Query 001352
Match_columns 1093
No_of_seqs 900 out of 5033
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 23:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 1.3E-68 4.5E-73 645.4 75.4 566 329-1007 10-577 (577)
2 2ymu_A WD-40 repeat protein; u 100.0 1.5E-66 5.2E-71 627.4 78.5 564 393-1060 12-577 (577)
3 1nr0_A Actin interacting prote 100.0 1.3E-66 4.4E-71 627.8 74.7 576 334-1009 17-610 (611)
4 1nr0_A Actin interacting prote 100.0 1.8E-63 6.3E-68 600.3 67.0 572 395-1062 16-610 (611)
5 3sfz_A APAF-1, apoptotic pepti 100.0 4.8E-64 1.6E-68 661.4 65.9 617 329-1063 609-1249(1249)
6 1pgu_A Actin interacting prote 100.0 1.8E-60 6E-65 579.7 69.7 558 333-1011 16-615 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 3.8E-58 1.3E-62 605.3 69.8 587 393-1066 611-1210(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-57 4.5E-62 567.7 69.7 593 332-1019 14-792 (902)
9 1pgu_A Actin interacting prote 100.0 4.5E-57 1.5E-61 549.7 63.9 556 393-1062 14-613 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 4.4E-56 1.5E-60 554.1 56.9 618 393-1088 13-811 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-47 4E-52 482.9 58.4 555 329-1011 7-602 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 3E-46 1E-50 470.1 58.6 479 393-965 9-502 (814)
13 1vyh_C Platelet-activating fac 100.0 3.2E-45 1.1E-49 418.0 40.2 287 330-652 103-409 (410)
14 3ow8_A WD repeat-containing pr 100.0 1.2E-39 4.2E-44 358.0 40.6 291 329-653 26-320 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 1.8E-39 6.2E-44 360.8 42.2 291 329-651 49-340 (340)
16 2pbi_B Guanine nucleotide-bind 100.0 1.2E-39 3.9E-44 363.9 40.7 295 328-651 57-354 (354)
17 2ynn_A Coatomer subunit beta'; 100.0 5E-39 1.7E-43 351.0 38.7 290 329-654 7-302 (304)
18 3frx_A Guanine nucleotide-bind 100.0 1.3E-38 4.3E-43 350.3 40.3 298 329-655 11-318 (319)
19 3iz6_a 40S ribosomal protein R 100.0 3.1E-39 1E-43 364.9 33.8 303 328-656 59-377 (380)
20 1vyh_C Platelet-activating fac 100.0 1.9E-38 6.4E-43 362.0 38.8 286 393-716 104-409 (410)
21 1got_B GT-beta; complex (GTP-b 100.0 7.9E-38 2.7E-42 347.6 42.6 286 393-715 51-340 (340)
22 4g56_B MGC81050 protein; prote 100.0 6.7E-39 2.3E-43 358.0 31.7 320 702-1066 19-346 (357)
23 3ow8_A WD repeat-containing pr 100.0 6.1E-38 2.1E-42 344.5 38.7 288 393-716 28-319 (321)
24 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.4E-38 3.2E-42 347.5 39.1 304 328-659 8-340 (345)
25 4ery_A WD repeat-containing pr 100.0 5.3E-37 1.8E-41 337.1 43.3 292 329-653 17-311 (312)
26 4gqb_B Methylosome protein 50; 100.0 1.2E-37 4.2E-42 344.3 37.6 298 333-655 28-332 (344)
27 4g56_B MGC81050 protein; prote 100.0 3.6E-38 1.2E-42 352.0 33.6 294 332-655 39-344 (357)
28 4gqb_B Methylosome protein 50; 100.0 9.5E-38 3.3E-42 345.2 34.4 296 734-1064 29-332 (344)
29 2pbi_B Guanine nucleotide-bind 100.0 1.4E-36 4.6E-41 339.1 41.8 287 393-715 60-354 (354)
30 1r5m_A SIR4-interacting protei 100.0 1E-36 3.6E-41 351.5 42.3 327 395-918 43-425 (425)
31 1r5m_A SIR4-interacting protei 100.0 6.1E-37 2.1E-41 353.4 39.5 340 333-717 43-424 (425)
32 1k32_A Tricorn protease; prote 100.0 2.6E-35 8.8E-40 377.4 56.8 523 334-1012 13-639 (1045)
33 2xzm_R RACK1; ribosome, transl 100.0 1.5E-36 5.3E-41 337.8 39.3 298 329-655 15-341 (343)
34 2ynn_A Coatomer subunit beta'; 100.0 2.3E-36 7.7E-41 329.9 39.8 268 393-675 9-280 (304)
35 3iz6_a 40S ribosomal protein R 100.0 3.1E-37 1.1E-41 348.5 33.4 290 393-717 62-374 (380)
36 2hes_X YDR267CP; beta-propelle 100.0 2E-36 6.8E-41 334.5 38.7 294 328-654 7-328 (330)
37 1erj_A Transcriptional repress 100.0 3.7E-36 1.3E-40 341.3 40.8 303 333-654 62-389 (393)
38 2pm9_A Protein WEB1, protein t 100.0 3.4E-37 1.1E-41 354.5 32.5 353 336-718 13-414 (416)
39 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.2E-36 1.4E-40 334.2 39.8 319 393-883 11-342 (345)
40 1gxr_A ESG1, transducin-like e 100.0 6.3E-36 2.1E-40 332.9 41.2 324 334-764 8-335 (337)
41 3frx_A Guanine nucleotide-bind 100.0 1.2E-35 4.1E-40 326.5 42.7 296 393-766 13-317 (319)
42 4aow_A Guanine nucleotide-bind 100.0 1E-35 3.6E-40 331.6 40.8 300 329-656 32-339 (340)
43 4ery_A WD repeat-containing pr 100.0 2.5E-35 8.6E-40 323.8 42.2 290 393-717 19-311 (312)
44 2hes_X YDR267CP; beta-propelle 100.0 7.9E-35 2.7E-39 321.7 42.4 306 565-1010 3-328 (330)
45 1erj_A Transcriptional repress 100.0 3.4E-35 1.2E-39 333.4 40.4 293 395-718 62-389 (393)
46 1k32_A Tricorn protease; prote 100.0 8.7E-34 3E-38 363.3 57.3 529 396-1065 13-639 (1045)
47 3gre_A Serine/threonine-protei 100.0 5.6E-36 1.9E-40 346.5 33.6 384 340-915 32-437 (437)
48 3vl1_A 26S proteasome regulato 100.0 1.3E-35 4.5E-40 341.6 36.1 346 399-918 58-419 (420)
49 3vl1_A 26S proteasome regulato 100.0 1.1E-35 3.9E-40 342.2 33.5 350 336-765 57-418 (420)
50 1gxr_A ESG1, transducin-like e 100.0 6.4E-35 2.2E-39 324.8 38.0 321 396-875 8-336 (337)
51 2pm9_A Protein WEB1, protein t 100.0 4.8E-36 1.6E-40 344.8 28.4 332 441-918 11-414 (416)
52 2xzm_R RACK1; ribosome, transl 100.0 3.5E-34 1.2E-38 318.8 42.4 288 392-718 16-340 (343)
53 3dm0_A Maltose-binding peripla 100.0 7E-35 2.4E-39 357.5 40.1 296 330-653 377-692 (694)
54 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.7E-34 1.9E-38 330.1 44.4 326 329-766 112-442 (445)
55 3ei3_B DNA damage-binding prot 100.0 2.5E-34 8.6E-39 326.2 37.4 294 329-654 67-382 (383)
56 3v7d_B Cell division control p 100.0 1.2E-33 4.1E-38 329.7 43.5 301 329-674 115-442 (464)
57 2j04_B YDR362CP, TAU91; beta p 100.0 8.4E-36 2.9E-40 346.0 24.5 335 334-717 132-516 (524)
58 3zwl_B Eukaryotic translation 100.0 1.7E-33 5.9E-38 317.6 41.8 290 329-656 26-348 (369)
59 1sq9_A Antiviral protein SKI8; 100.0 4E-34 1.4E-38 326.5 36.4 293 329-655 10-396 (397)
60 2j04_B YDR362CP, TAU91; beta p 100.0 4.1E-35 1.4E-39 340.2 28.1 350 396-876 132-517 (524)
61 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.7E-33 1.6E-37 322.4 44.5 319 393-876 114-442 (445)
62 3gre_A Serine/threonine-protei 100.0 4.7E-35 1.6E-39 338.7 26.8 386 404-1007 34-437 (437)
63 3odt_A Protein DOA1; ubiquitin 100.0 2.5E-33 8.4E-38 308.3 37.7 291 327-659 10-301 (313)
64 3i2n_A WD repeat-containing pr 100.0 7.5E-34 2.6E-38 319.0 33.9 294 330-656 13-355 (357)
65 3v7d_B Cell division control p 100.0 1.4E-32 4.7E-37 320.7 45.5 344 523-1008 114-461 (464)
66 4aow_A Guanine nucleotide-bind 100.0 1.1E-32 3.7E-37 307.2 42.4 299 393-767 34-338 (340)
67 3k26_A Polycomb protein EED; W 100.0 4E-34 1.4E-38 322.5 29.8 293 331-653 14-365 (366)
68 4e54_B DNA damage-binding prot 100.0 3.4E-34 1.2E-38 330.2 29.1 300 330-657 114-433 (435)
69 4h5i_A Guanine nucleotide-exch 100.0 2.7E-33 9.4E-38 313.3 34.7 203 802-1011 132-344 (365)
70 4a11_B DNA excision repair pro 100.0 3.6E-33 1.2E-37 319.9 35.1 348 556-1062 23-404 (408)
71 1k8k_C P40, ARP2/3 complex 41 100.0 5.1E-33 1.8E-37 314.2 35.6 292 331-655 4-362 (372)
72 3zwl_B Eukaryotic translation 100.0 2.8E-32 9.7E-37 307.7 41.2 289 391-719 26-347 (369)
73 4e54_B DNA damage-binding prot 100.0 2.5E-33 8.4E-38 323.1 32.3 302 570-1014 113-434 (435)
74 3ei3_B DNA damage-binding prot 100.0 9.1E-33 3.1E-37 313.3 36.1 307 560-1010 57-382 (383)
75 4aez_A CDC20, WD repeat-contai 100.0 2.4E-32 8.3E-37 311.4 38.9 296 332-660 88-386 (401)
76 4gga_A P55CDC, cell division c 100.0 5.8E-32 2E-36 310.2 41.6 289 337-662 107-403 (420)
77 4h5i_A Guanine nucleotide-exch 100.0 4.2E-33 1.4E-37 311.8 30.5 298 337-655 16-344 (365)
78 2pm7_B Protein transport prote 100.0 2E-32 6.8E-37 297.5 34.9 250 330-609 4-284 (297)
79 3dwl_C Actin-related protein 2 100.0 5.7E-34 1.9E-38 322.6 23.1 288 332-652 8-377 (377)
80 4a11_B DNA excision repair pro 100.0 3.4E-32 1.2E-36 311.7 37.9 357 356-918 21-405 (408)
81 3dm0_A Maltose-binding peripla 100.0 9.6E-32 3.3E-36 329.6 44.3 211 437-656 377-594 (694)
82 1sq9_A Antiviral protein SKI8; 100.0 3.3E-32 1.1E-36 310.6 37.2 296 479-919 9-396 (397)
83 2j04_A TAU60, YPL007P, hypothe 100.0 4.8E-33 1.6E-37 311.2 28.5 314 335-755 15-350 (588)
84 2pm7_B Protein transport prote 100.0 3.9E-32 1.3E-36 295.2 34.1 252 393-654 5-285 (297)
85 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-33 4.2E-38 316.0 20.8 330 529-998 14-349 (588)
86 1k8k_C P40, ARP2/3 complex 41 100.0 8.5E-32 2.9E-36 304.2 34.8 290 393-718 4-361 (372)
87 4ggc_A P55CDC, cell division c 100.0 9E-31 3.1E-35 288.5 41.7 282 338-655 28-316 (318)
88 3k26_A Polycomb protein EED; W 100.0 1.2E-31 4E-36 302.2 33.3 293 392-717 13-365 (366)
89 3bg1_A Protein SEC13 homolog; 100.0 3E-32 1E-36 298.9 27.1 253 329-609 7-292 (316)
90 3dw8_B Serine/threonine-protei 100.0 1.4E-31 4.9E-36 310.7 34.3 299 334-653 27-445 (447)
91 3i2n_A WD repeat-containing pr 100.0 2.7E-31 9.2E-36 298.2 33.7 292 392-717 13-352 (357)
92 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-30 3.6E-35 287.2 37.5 281 393-721 14-299 (313)
93 4gga_A P55CDC, cell division c 100.0 1.3E-30 4.3E-35 299.1 37.3 282 399-721 107-398 (420)
94 1p22_A F-BOX/WD-repeat protein 100.0 1E-30 3.5E-35 301.5 35.6 276 333-658 131-418 (435)
95 1yfq_A Cell cycle arrest prote 100.0 5.5E-31 1.9E-35 293.6 31.8 285 331-651 7-321 (342)
96 3dwl_C Actin-related protein 2 100.0 3.2E-32 1.1E-36 308.2 21.6 241 395-653 9-280 (377)
97 3bg1_A Protein SEC13 homolog; 100.0 2.4E-31 8.1E-36 291.7 25.5 250 393-654 9-293 (316)
98 2aq5_A Coronin-1A; WD40 repeat 100.0 1E-30 3.5E-35 298.2 31.8 297 337-656 36-344 (402)
99 3mmy_A MRNA export factor; mRN 100.0 1.2E-30 4.2E-35 294.1 30.7 290 327-652 31-344 (368)
100 4aez_A CDC20, WD repeat-contai 100.0 5.3E-30 1.8E-34 292.0 34.2 285 394-720 88-382 (401)
101 4ggc_A P55CDC, cell division c 100.0 1.7E-29 5.8E-34 278.3 37.2 280 400-717 28-314 (318)
102 3dw8_B Serine/threonine-protei 100.0 5E-30 1.7E-34 297.7 34.2 253 396-658 27-377 (447)
103 3f3f_A Nucleoporin SEH1; struc 100.0 7.5E-30 2.6E-34 285.3 33.9 263 330-617 6-344 (351)
104 3jrp_A Fusion protein of prote 100.0 6E-30 2.1E-34 289.8 32.5 255 393-657 7-290 (379)
105 3jrp_A Fusion protein of prote 100.0 6E-30 2E-34 289.8 32.5 260 327-613 3-290 (379)
106 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-29 5.4E-34 291.6 35.2 275 394-720 130-416 (435)
107 3mmy_A MRNA export factor; mRN 100.0 1.2E-29 4.2E-34 285.9 33.2 290 393-717 35-345 (368)
108 3f3f_A Nucleoporin SEH1; struc 100.0 2.9E-29 9.9E-34 280.5 34.0 259 392-661 6-344 (351)
109 1yfq_A Cell cycle arrest prote 100.0 2.3E-29 7.9E-34 280.5 30.9 285 393-716 7-322 (342)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.4E-28 8E-33 283.0 36.7 305 337-654 6-391 (450)
111 3vu4_A KMHSV2; beta-propeller 100.0 1E-28 3.6E-33 275.3 31.2 283 327-655 11-337 (355)
112 1l0q_A Surface layer protein; 100.0 2.5E-27 8.4E-32 269.5 42.9 280 348-666 2-287 (391)
113 3jro_A Fusion protein of prote 100.0 3.2E-29 1.1E-33 308.5 27.4 260 328-612 2-287 (753)
114 2aq5_A Coronin-1A; WD40 repeat 100.0 2.4E-28 8.2E-33 278.6 30.6 286 398-717 35-341 (402)
115 1l0q_A Surface layer protein; 100.0 8.7E-27 3E-31 264.9 43.1 328 458-954 4-364 (391)
116 2w18_A PALB2, fancn, partner a 100.0 2.2E-27 7.6E-32 248.9 32.8 270 637-1008 56-355 (356)
117 3jro_A Fusion protein of prote 100.0 1.2E-28 4E-33 303.4 26.5 254 393-656 5-287 (753)
118 3bws_A Protein LP49; two-domai 100.0 1.7E-26 6E-31 266.5 42.6 355 396-918 26-432 (433)
119 3bws_A Protein LP49; two-domai 100.0 9.5E-27 3.3E-31 268.7 40.0 300 398-765 123-431 (433)
120 2xyi_A Probable histone-bindin 100.0 1E-27 3.6E-32 275.4 30.9 254 331-612 124-412 (430)
121 3vu4_A KMHSV2; beta-propeller 100.0 3.7E-27 1.3E-31 262.8 34.2 296 393-720 15-338 (355)
122 3lrv_A PRE-mRNA-splicing facto 100.0 5.9E-28 2E-32 268.6 25.4 273 339-653 40-332 (343)
123 3lrv_A PRE-mRNA-splicing facto 100.0 2.1E-27 7.2E-32 264.1 29.8 278 449-918 43-333 (343)
124 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.5E-27 1.9E-31 271.5 34.2 264 398-675 5-364 (450)
125 2xyi_A Probable histone-bindin 100.0 8.9E-27 3E-31 267.6 35.1 255 390-655 121-411 (430)
126 1nir_A Nitrite reductase; hemo 100.0 3E-26 1E-30 268.5 38.1 343 537-975 144-522 (543)
127 1nir_A Nitrite reductase; hemo 100.0 6.8E-26 2.3E-30 265.5 41.0 345 342-886 144-524 (543)
128 2w18_A PALB2, fancn, partner a 100.0 2.5E-26 8.7E-31 240.9 33.3 286 337-652 41-355 (356)
129 4gq1_A NUP37; propeller, trans 100.0 1.6E-27 5.5E-32 269.8 21.3 272 333-652 87-387 (393)
130 4gq1_A NUP37; propeller, trans 99.9 7.5E-26 2.6E-30 256.1 31.4 276 498-918 99-389 (393)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.2E-25 1.1E-29 252.2 31.1 305 336-677 63-409 (415)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.9E-24 2.4E-28 241.2 31.8 307 441-900 61-410 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 2.6E-23 8.7E-28 257.8 37.9 303 335-653 36-412 (741)
134 2ecf_A Dipeptidyl peptidase IV 99.9 1E-22 3.5E-27 252.3 34.7 331 442-920 36-461 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 6.4E-23 2.2E-27 253.5 32.1 386 532-1017 18-450 (723)
136 1xfd_A DIP, dipeptidyl aminope 99.9 3.7E-23 1.3E-27 255.7 28.8 312 337-679 18-423 (723)
137 3u4y_A Uncharacterized protein 99.9 1.8E-21 6.2E-26 215.3 37.6 282 341-656 3-306 (331)
138 3vgz_A Uncharacterized protein 99.9 4.9E-21 1.7E-25 214.0 34.6 274 336-645 41-335 (353)
139 2z3z_A Dipeptidyl aminopeptida 99.9 4.4E-21 1.5E-25 236.1 37.2 238 400-653 28-341 (706)
140 1ri6_A Putative isomerase YBHE 99.9 1.5E-20 5.3E-25 208.9 37.2 277 347-653 4-307 (343)
141 2z3z_A Dipeptidyl aminopeptida 99.9 5E-21 1.7E-25 235.6 34.3 324 445-920 28-437 (706)
142 1ri6_A Putative isomerase YBHE 99.9 3.4E-20 1.2E-24 206.2 36.3 205 805-1013 85-313 (343)
143 1pby_B Quinohemoprotein amine 99.9 4E-20 1.4E-24 205.0 33.8 279 592-1018 2-318 (337)
144 1pby_B Quinohemoprotein amine 99.9 3.6E-20 1.2E-24 205.3 31.4 280 350-663 3-319 (337)
145 3u4y_A Uncharacterized protein 99.9 1.5E-19 5.2E-24 199.8 35.9 199 448-655 3-208 (331)
146 2ojh_A Uncharacterized protein 99.9 1E-20 3.5E-25 205.3 25.2 257 353-645 17-293 (297)
147 3vgz_A Uncharacterized protein 99.9 3.1E-19 1E-23 199.3 37.0 248 397-659 40-308 (353)
148 1z68_A Fibroblast activation p 99.9 1.2E-20 4.2E-25 232.6 25.7 378 535-1018 20-451 (719)
149 3o4h_A Acylamino-acid-releasin 99.8 4.1E-20 1.4E-24 221.4 25.3 281 326-653 11-314 (582)
150 3hfq_A Uncharacterized protein 99.8 1.2E-18 4.1E-23 193.9 34.0 252 802-1067 38-321 (347)
151 1z68_A Fibroblast activation p 99.8 8.8E-20 3E-24 224.9 27.0 279 339-654 19-391 (719)
152 2ojh_A Uncharacterized protein 99.8 5.5E-19 1.9E-23 191.6 29.6 252 554-909 20-293 (297)
153 4a5s_A Dipeptidyl peptidase 4 99.8 1.5E-18 5E-23 213.6 36.0 280 335-656 16-355 (740)
154 3scy_A Hypothetical bacterial 99.8 2.7E-17 9.1E-22 184.0 41.5 312 540-988 11-360 (361)
155 3scy_A Hypothetical bacterial 99.8 1.4E-17 4.9E-22 186.2 38.5 302 341-673 7-359 (361)
156 3pe7_A Oligogalacturonate lyas 99.8 4.4E-19 1.5E-23 201.0 25.7 299 329-653 24-381 (388)
157 4a5s_A Dipeptidyl peptidase 4 99.8 6E-18 2E-22 208.2 37.7 381 532-1018 18-457 (740)
158 3hfq_A Uncharacterized protein 99.8 1.1E-17 3.9E-22 185.9 36.5 247 396-653 38-316 (347)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 3E-19 1E-23 203.4 22.5 272 803-1088 36-358 (434)
160 1jmx_B Amine dehydrogenase; ox 99.8 4E-18 1.4E-22 189.9 31.3 284 339-662 3-333 (349)
161 3o4h_A Acylamino-acid-releasin 99.8 1.2E-18 4.2E-23 208.6 27.5 236 397-652 21-274 (582)
162 2oit_A Nucleoporin 214KDA; NH2 99.8 1.6E-18 5.5E-23 197.4 26.2 221 335-566 36-279 (434)
163 1jmx_B Amine dehydrogenase; ox 99.8 2E-17 6.7E-22 184.3 31.8 297 497-886 8-335 (349)
164 3pe7_A Oligogalacturonate lyas 99.8 1.1E-17 3.6E-22 189.5 27.7 295 393-718 26-382 (388)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.3E-17 1.1E-21 183.2 31.1 249 804-1064 40-342 (365)
166 2oiz_A Aromatic amine dehydrog 99.8 1.1E-16 3.8E-21 177.6 32.7 297 345-677 13-359 (361)
167 2oiz_A Aromatic amine dehydrog 99.8 4.7E-16 1.6E-20 172.6 34.6 313 499-900 14-360 (361)
168 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.5E-16 5.2E-21 177.8 30.8 250 396-655 38-342 (365)
169 3c5m_A Oligogalacturonate lyas 99.8 5.4E-17 1.8E-21 184.3 25.7 283 337-652 37-380 (396)
170 1qks_A Cytochrome CD1 nitrite 99.7 9.7E-15 3.3E-19 169.9 38.3 329 555-975 176-546 (567)
171 3azo_A Aminopeptidase; POP fam 99.7 1.4E-15 4.9E-20 185.3 31.2 294 329-658 17-373 (662)
172 1qks_A Cytochrome CD1 nitrite 99.7 4E-14 1.4E-18 164.7 39.5 325 589-1018 165-546 (567)
173 2gop_A Trilobed protease; beta 99.7 4.1E-15 1.4E-19 165.2 30.0 262 337-653 16-330 (347)
174 3azo_A Aminopeptidase; POP fam 99.7 1.5E-15 5.2E-20 185.1 26.6 209 438-654 19-274 (662)
175 3c5m_A Oligogalacturonate lyas 99.7 9.2E-16 3.1E-20 174.1 22.9 244 400-657 38-332 (396)
176 3fvz_A Peptidyl-glycine alpha- 99.7 1E-14 3.5E-19 160.0 29.0 248 803-1063 23-322 (329)
177 3fvz_A Peptidyl-glycine alpha- 99.7 1.6E-14 5.3E-19 158.6 30.1 248 336-610 24-322 (329)
178 1q7f_A NHL, brain tumor CG1071 99.7 3.3E-14 1.1E-18 152.9 31.8 242 802-1065 28-282 (286)
179 4a2l_A BT_4663, two-component 99.7 2E-10 6.9E-15 142.3 70.3 586 336-1062 43-658 (795)
180 4a2l_A BT_4663, two-component 99.7 2.6E-10 8.9E-15 141.3 68.6 535 336-1009 88-658 (795)
181 1q7f_A NHL, brain tumor CG1071 99.6 1.4E-13 4.8E-18 147.9 31.7 246 395-655 27-281 (286)
182 2dg1_A DRP35, lactonase; beta 99.6 1.3E-13 4.3E-18 152.1 30.4 274 336-645 6-301 (333)
183 2xdw_A Prolyl endopeptidase; a 99.6 2.1E-13 7.3E-18 166.8 32.0 250 395-656 122-416 (710)
184 3v9f_A Two-component system se 99.6 2.7E-09 9.3E-14 131.8 68.5 588 336-1062 19-655 (781)
185 2xdw_A Prolyl endopeptidase; a 99.6 1.3E-13 4.4E-18 168.8 28.7 250 333-612 122-416 (710)
186 2gop_A Trilobed protease; beta 99.6 3.9E-13 1.3E-17 149.2 30.2 285 581-1012 16-332 (347)
187 3e5z_A Putative gluconolactona 99.6 3.1E-13 1.1E-17 146.0 28.1 244 331-613 23-289 (296)
188 3sjl_D Methylamine dehydrogena 99.6 4.1E-13 1.4E-17 145.6 26.8 291 337-664 34-373 (386)
189 2bkl_A Prolyl endopeptidase; m 99.6 2.6E-13 8.8E-18 165.5 28.4 290 340-656 72-399 (695)
190 3dsm_A Uncharacterized protein 99.6 7.3E-13 2.5E-17 144.9 29.2 277 357-662 16-309 (328)
191 2mad_H Methylamine dehydrogena 99.6 9.7E-12 3.3E-16 137.6 38.1 203 807-1017 128-357 (373)
192 3sjl_D Methylamine dehydrogena 99.6 2.6E-12 8.8E-17 139.3 32.3 204 806-1018 139-371 (386)
193 3no2_A Uncharacterized protein 99.6 1.5E-12 5.3E-17 137.6 30.1 245 350-630 7-272 (276)
194 2mad_H Methylamine dehydrogena 99.6 1.2E-11 4.2E-16 136.8 37.6 281 342-660 27-356 (373)
195 2z2n_A Virginiamycin B lyase; 99.6 1.8E-11 6.2E-16 132.3 38.3 283 333-655 12-296 (299)
196 2dg1_A DRP35, lactonase; beta 99.6 9.3E-13 3.2E-17 145.1 28.1 261 398-674 6-288 (333)
197 3dsm_A Uncharacterized protein 99.5 1.2E-12 4.2E-17 143.1 28.2 272 707-1018 15-309 (328)
198 3no2_A Uncharacterized protein 99.5 1.3E-12 4.3E-17 138.3 27.2 247 814-1076 4-265 (276)
199 3e5z_A Putative gluconolactona 99.5 2.7E-12 9.2E-17 138.6 30.0 238 393-655 23-287 (296)
200 3v9f_A Two-component system se 99.5 1.4E-08 4.7E-13 125.5 66.6 537 336-1009 66-655 (781)
201 2bkl_A Prolyl endopeptidase; m 99.5 4E-13 1.4E-17 163.8 23.2 250 333-614 118-401 (695)
202 1rwi_B Serine/threonine-protei 99.5 2.4E-12 8.3E-17 136.9 24.9 241 337-613 25-267 (270)
203 1yr2_A Prolyl oligopeptidase; 99.5 2.4E-12 8.3E-17 158.0 27.4 247 395-656 160-443 (741)
204 2z2n_A Virginiamycin B lyase; 99.5 1.1E-10 3.7E-15 126.1 37.5 242 393-653 10-254 (299)
205 3c75_H MADH, methylamine dehyd 99.5 1.1E-11 3.9E-16 137.1 29.6 206 807-1018 180-410 (426)
206 2qc5_A Streptogramin B lactona 99.5 2E-10 6.7E-15 124.1 38.3 277 335-652 19-298 (300)
207 1rwi_B Serine/threonine-protei 99.5 7.5E-12 2.6E-16 133.0 25.9 240 399-656 25-266 (270)
208 3c75_H MADH, methylamine dehyd 99.5 8.9E-12 3.1E-16 137.9 26.0 281 345-661 82-409 (426)
209 1yr2_A Prolyl oligopeptidase; 99.4 6.9E-12 2.4E-16 154.0 24.2 247 334-613 161-444 (741)
210 2qc5_A Streptogramin B lactona 99.4 1.7E-09 5.8E-14 116.7 37.1 243 393-653 15-259 (300)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.4E-10 4.8E-15 126.3 28.6 246 336-610 18-299 (314)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 2E-10 6.8E-15 125.1 27.5 245 737-1011 19-300 (314)
213 3hrp_A Uncharacterized protein 99.3 5.4E-10 1.8E-14 125.6 30.3 242 336-608 131-408 (409)
214 3iuj_A Prolyl endopeptidase; h 99.3 2.3E-10 7.7E-15 139.0 28.3 252 333-614 126-409 (693)
215 1xip_A Nucleoporin NUP159; bet 99.3 3.9E-10 1.3E-14 123.0 27.1 174 804-998 38-232 (388)
216 4a0p_A LRP6, LRP-6, low-densit 99.3 4.9E-06 1.7E-10 98.0 63.2 534 411-1018 8-557 (628)
217 3g4e_A Regucalcin; six bladed 99.3 4.9E-10 1.7E-14 120.6 26.2 228 337-599 14-261 (297)
218 2qe8_A Uncharacterized protein 99.3 1E-10 3.4E-15 128.8 21.2 273 336-647 17-314 (343)
219 1mda_H Methylamine dehydrogena 99.3 1.5E-10 5.2E-15 126.1 22.2 196 807-1018 127-354 (368)
220 3hrp_A Uncharacterized protein 99.3 1.2E-09 4.1E-14 122.7 30.0 247 804-1061 131-408 (409)
221 3g4e_A Regucalcin; six bladed 99.3 1.3E-09 4.4E-14 117.2 28.9 228 737-999 14-261 (297)
222 1mda_H Methylamine dehydrogena 99.3 2.5E-10 8.5E-15 124.4 21.8 273 348-664 32-356 (368)
223 3dr2_A Exported gluconolactona 99.2 1E-09 3.6E-14 118.5 25.5 237 331-607 40-303 (305)
224 2qe8_A Uncharacterized protein 99.2 3.1E-10 1.1E-14 124.9 21.3 272 736-1059 17-317 (343)
225 3iuj_A Prolyl endopeptidase; h 99.2 4.4E-10 1.5E-14 136.4 24.5 245 395-656 126-407 (693)
226 1kb0_A Quinohemoprotein alcoho 99.2 5.6E-09 1.9E-13 125.2 32.3 228 823-1063 189-567 (677)
227 2ghs_A AGR_C_1268P; regucalcin 99.2 4.4E-09 1.5E-13 114.6 28.2 225 337-600 50-292 (326)
228 3s94_A LRP-6, low-density lipo 99.2 1.8E-05 6.3E-10 93.1 59.3 519 418-1011 17-552 (619)
229 1kb0_A Quinohemoprotein alcoho 99.2 7E-09 2.4E-13 124.3 30.5 333 501-905 78-537 (677)
230 1xip_A Nucleoporin NUP159; bet 99.2 4.2E-10 1.4E-14 122.7 18.0 177 398-596 38-230 (388)
231 1yiq_A Quinohemoprotein alcoho 99.2 1E-08 3.4E-13 123.3 31.3 383 458-904 72-534 (689)
232 1yiq_A Quinohemoprotein alcoho 99.2 6.4E-09 2.2E-13 124.9 29.5 167 849-1018 239-513 (689)
233 3q7m_A Lipoprotein YFGL, BAMB; 99.2 8.2E-08 2.8E-12 107.2 36.3 152 458-620 55-217 (376)
234 2ghs_A AGR_C_1268P; regucalcin 99.2 1.3E-08 4.5E-13 110.8 28.8 225 738-1000 51-292 (326)
235 3dr2_A Exported gluconolactona 99.1 9.6E-09 3.3E-13 110.9 27.1 231 396-646 43-299 (305)
236 2ece_A 462AA long hypothetical 99.1 6.2E-08 2.1E-12 105.3 32.0 233 810-1051 88-399 (462)
237 3q7m_A Lipoprotein YFGL, BAMB; 99.1 6.5E-08 2.2E-12 108.0 33.8 277 351-663 56-346 (376)
238 2ece_A 462AA long hypothetical 99.1 1.1E-08 3.8E-13 111.1 25.1 240 341-598 87-399 (462)
239 1fwx_A Nitrous oxide reductase 99.1 6.8E-09 2.3E-13 117.0 23.3 345 456-923 15-436 (595)
240 3hxj_A Pyrrolo-quinoline quino 99.1 4.1E-09 1.4E-13 115.5 19.5 293 502-918 32-324 (330)
241 3hxj_A Pyrrolo-quinoline quino 99.0 1E-08 3.4E-13 112.4 21.5 269 339-662 23-291 (330)
242 3ei3_A DNA damage-binding prot 99.0 0.00023 7.7E-09 89.6 62.1 619 337-1009 328-1061(1158)
243 3ei3_A DNA damage-binding prot 99.0 0.00029 9.9E-09 88.6 66.5 569 400-1063 329-999 (1158)
244 1fwx_A Nitrous oxide reductase 99.0 2.3E-08 7.9E-13 112.7 21.9 233 813-1063 99-431 (595)
245 2hz6_A Endoplasmic reticulum t 99.0 6E-10 2.1E-14 123.5 8.5 190 408-619 8-201 (369)
246 4a0p_A LRP6, LRP-6, low-densit 98.9 0.00033 1.1E-08 82.4 64.6 533 349-973 8-555 (628)
247 2hz6_A Endoplasmic reticulum t 98.9 5.3E-10 1.8E-14 123.9 4.7 190 856-1071 8-200 (369)
248 1kv9_A Type II quinohemoprotei 98.8 2.4E-06 8.2E-11 102.3 33.9 376 458-906 68-520 (668)
249 1npe_A Nidogen, entactin; glyc 98.8 7.4E-06 2.5E-10 86.0 34.1 223 398-636 36-263 (267)
250 1npe_A Nidogen, entactin; glyc 98.8 1.1E-05 3.7E-10 84.8 34.8 257 409-677 1-262 (267)
251 1kv9_A Type II quinohemoprotei 98.8 1.4E-06 4.8E-11 104.3 31.2 194 823-1019 177-497 (668)
252 1w6s_A Methanol dehydrogenase 98.8 4.1E-06 1.4E-10 97.7 32.2 166 849-1018 245-511 (599)
253 2iwa_A Glutamine cyclotransfer 98.8 6.6E-07 2.3E-11 91.6 22.4 199 805-1011 22-238 (266)
254 3s94_A LRP-6, low-density lipo 98.8 0.00093 3.2E-08 78.6 63.9 503 396-968 38-552 (619)
255 3ott_A Two-component system se 98.7 0.0017 5.9E-08 79.5 64.8 572 397-1062 21-625 (758)
256 2iwa_A Glutamine cyclotransfer 98.7 2.6E-06 8.8E-11 87.2 24.5 216 834-1064 9-238 (266)
257 2ad6_A Methanol dehydrogenase 98.7 3.1E-05 1E-09 90.6 35.9 378 458-904 64-523 (571)
258 1flg_A Protein (quinoprotein e 98.7 4E-05 1.4E-09 89.7 35.2 380 459-903 71-544 (582)
259 2ad6_A Methanol dehydrogenase 98.6 1.3E-05 4.4E-10 93.8 30.8 167 849-1019 239-503 (571)
260 1flg_A Protein (quinoprotein e 98.6 5E-05 1.7E-09 88.8 35.3 150 867-1019 291-525 (582)
261 1w6s_A Methanol dehydrogenase 98.6 6.8E-05 2.3E-09 87.4 36.0 382 458-902 64-530 (599)
262 3nol_A Glutamine cyclotransfer 98.6 5.4E-06 1.8E-10 83.5 21.6 186 804-1000 43-245 (262)
263 2xe4_A Oligopeptidase B; hydro 98.6 8.1E-06 2.8E-10 99.5 26.8 248 337-613 175-461 (751)
264 3nol_A Glutamine cyclotransfer 98.5 6.7E-06 2.3E-10 82.8 21.0 185 445-643 45-244 (262)
265 3nok_A Glutaminyl cyclase; bet 98.5 5.5E-06 1.9E-10 83.3 19.7 184 804-999 55-254 (268)
266 1k3i_A Galactose oxidase precu 98.5 6.8E-06 2.3E-10 98.7 23.5 278 340-643 190-530 (656)
267 2xbg_A YCF48-like protein; pho 98.5 0.00038 1.3E-08 75.2 33.9 234 803-1060 79-319 (327)
268 2p4o_A Hypothetical protein; p 98.4 9.5E-05 3.2E-09 79.3 28.5 229 398-645 32-279 (306)
269 2fp8_A Strictosidine synthase; 98.4 3.6E-05 1.2E-09 83.3 25.4 241 398-654 19-313 (322)
270 3mbr_X Glutamine cyclotransfer 98.4 4.6E-05 1.6E-09 76.1 23.4 188 803-1000 20-224 (243)
271 2fp8_A Strictosidine synthase; 98.4 0.00011 3.7E-09 79.6 28.6 263 336-610 19-313 (322)
272 3v64_C Agrin; beta propeller, 98.4 0.00085 2.9E-08 73.0 35.2 249 335-618 33-283 (349)
273 3nok_A Glutaminyl cyclase; bet 98.4 5E-05 1.7E-09 76.4 22.7 185 398-599 55-254 (268)
274 1k3i_A Galactose oxidase precu 98.4 7.4E-05 2.5E-09 89.7 27.9 120 535-655 190-324 (656)
275 3qqz_A Putative uncharacterize 98.4 0.00016 5.4E-09 73.5 25.9 205 331-563 22-251 (255)
276 2p4o_A Hypothetical protein; p 98.3 0.00047 1.6E-08 73.7 30.7 227 736-1001 32-279 (306)
277 3v65_B Low-density lipoprotein 98.3 0.00061 2.1E-08 75.4 32.4 248 337-619 78-327 (386)
278 3mbr_X Glutamine cyclotransfer 98.3 8.7E-05 3E-09 74.1 22.6 186 444-643 22-223 (243)
279 1ijq_A LDL receptor, low-densi 98.3 0.0016 5.6E-08 69.7 34.3 238 411-661 3-245 (316)
280 3ott_A Two-component system se 98.3 0.019 6.6E-07 70.1 68.5 564 336-1009 22-625 (758)
281 3v64_C Agrin; beta propeller, 98.3 0.0018 6E-08 70.5 34.2 249 398-662 34-283 (349)
282 3v65_B Low-density lipoprotein 98.3 0.001 3.5E-08 73.6 32.2 247 400-662 79-326 (386)
283 1ijq_A LDL receptor, low-densi 98.3 0.0021 7.1E-08 68.9 33.6 232 358-618 10-246 (316)
284 3qqz_A Putative uncharacterize 98.2 0.00094 3.2E-08 67.8 28.0 216 839-1060 21-250 (255)
285 2xe4_A Oligopeptidase B; hydro 98.2 0.00027 9.2E-09 86.0 28.3 201 395-608 170-398 (751)
286 3p5b_L Low density lipoprotein 98.2 0.0034 1.2E-07 69.6 34.0 239 411-662 85-328 (400)
287 4hw6_A Hypothetical protein, I 98.2 0.00048 1.7E-08 77.3 27.0 246 805-1061 140-431 (433)
288 3tc9_A Hypothetical hydrolase; 98.2 0.00056 1.9E-08 76.8 27.6 245 805-1061 138-428 (430)
289 2xbg_A YCF48-like protein; pho 98.2 0.0048 1.7E-07 66.4 34.1 281 336-652 36-320 (327)
290 3p5b_L Low density lipoprotein 98.0 0.0092 3.1E-07 66.1 33.2 250 339-618 76-328 (400)
291 3sov_A LRP-6, low-density lipo 98.0 0.0077 2.6E-07 64.2 30.3 233 357-619 12-247 (318)
292 3tc9_A Hypothetical hydrolase; 98.0 0.0037 1.3E-07 70.0 29.1 155 337-519 138-301 (430)
293 3sov_A LRP-6, low-density lipo 97.9 0.016 5.6E-07 61.7 31.5 239 411-662 6-246 (318)
294 4hw6_A Hypothetical protein, I 97.9 0.003 1E-07 70.8 26.7 238 337-609 140-432 (433)
295 3amr_A 3-phytase; beta-propell 97.9 0.0051 1.8E-07 64.7 25.9 194 815-1018 40-272 (355)
296 3m0c_C LDL receptor, low-densi 97.8 0.016 5.3E-07 69.8 33.3 238 411-661 397-639 (791)
297 3amr_A 3-phytase; beta-propell 97.8 0.0056 1.9E-07 64.4 24.8 193 458-661 42-271 (355)
298 3m0c_C LDL receptor, low-densi 97.8 0.029 9.9E-07 67.5 33.9 251 337-618 386-640 (791)
299 2xzh_A Clathrin heavy chain 1; 97.8 0.05 1.7E-06 55.9 30.8 237 340-611 71-333 (365)
300 3kya_A Putative phosphatase; s 97.7 0.0095 3.2E-07 66.7 27.2 250 399-658 140-479 (496)
301 3kya_A Putative phosphatase; s 97.7 0.01 3.5E-07 66.4 27.1 208 804-1014 186-479 (496)
302 3a9g_A Putative uncharacterize 97.6 0.019 6.5E-07 62.3 26.7 230 804-1051 29-330 (354)
303 1n7d_A LDL receptor, low-densi 97.6 0.00037 1.3E-08 83.5 13.9 205 804-1018 406-622 (699)
304 2p9w_A MAL S 1 allergenic prot 97.6 0.007 2.4E-07 63.1 21.3 202 805-1010 14-265 (334)
305 1n7d_A LDL receptor, low-densi 97.6 0.00063 2.1E-08 81.5 15.5 234 418-663 385-623 (699)
306 2ism_A Putative oxidoreductase 97.5 0.018 6.1E-07 62.5 25.3 228 805-1051 32-333 (352)
307 1bpo_A Protein (clathrin); cla 97.5 0.11 3.6E-06 55.8 29.5 238 340-612 70-333 (494)
308 2p9w_A MAL S 1 allergenic prot 97.4 0.053 1.8E-06 56.5 24.4 166 337-520 14-216 (334)
309 2g8s_A Glucose/sorbosone dehyd 97.3 0.037 1.2E-06 60.0 24.1 238 805-1061 19-350 (353)
310 2xzh_A Clathrin heavy chain 1; 97.3 0.22 7.5E-06 51.3 34.9 231 808-1064 71-333 (365)
311 3a9g_A Putative uncharacterize 97.3 0.12 4.1E-06 55.9 27.8 231 337-598 30-330 (354)
312 2ism_A Putative oxidoreductase 97.1 0.031 1.1E-06 60.6 21.5 230 398-642 31-333 (352)
313 3pbp_A Nucleoporin NUP82; beta 97.1 0.027 9.2E-07 60.4 19.6 110 808-919 25-159 (452)
314 1bpo_A Protein (clathrin); cla 97.1 0.44 1.5E-05 51.2 34.0 266 358-658 48-335 (494)
315 3ii7_A Kelch-like protein 7; p 97.0 0.13 4.5E-06 54.4 24.6 237 349-616 13-278 (306)
316 2vpj_A Kelch-like protein 12; 97.0 0.036 1.2E-06 58.7 19.9 196 408-614 62-282 (301)
317 2vpj_A Kelch-like protein 12; 97.0 0.047 1.6E-06 57.8 20.6 235 408-656 14-280 (301)
318 3das_A Putative oxidoreductase 97.0 0.55 1.9E-05 49.9 29.1 100 805-906 203-326 (347)
319 3sbq_A Nitrous-oxide reductase 96.9 0.61 2.1E-05 51.7 27.6 113 805-920 324-480 (638)
320 3ii7_A Kelch-like protein 7; p 96.8 0.069 2.4E-06 56.6 20.5 233 816-1075 13-282 (306)
321 2xn4_A Kelch-like protein 2; s 96.8 0.076 2.6E-06 56.2 20.4 235 409-657 16-279 (302)
322 2g8s_A Glucose/sorbosone dehyd 96.8 0.31 1.1E-05 52.6 25.4 239 398-647 18-347 (353)
323 2xn4_A Kelch-like protein 2; s 96.7 0.12 4.2E-06 54.5 21.6 232 814-1072 15-283 (302)
324 2xtc_A F-box-like/WD repeat-co 96.7 0.0013 4.4E-08 52.5 4.1 35 1-35 1-35 (90)
325 3das_A Putative oxidoreductase 96.7 0.44 1.5E-05 50.6 24.8 197 804-1011 32-293 (347)
326 4asc_A Kelch repeat and BTB do 96.6 0.17 5.8E-06 53.8 21.8 227 419-658 13-281 (315)
327 4asc_A Kelch repeat and BTB do 96.6 0.22 7.5E-06 52.9 22.5 230 823-1077 12-289 (315)
328 3sre_A PON1, serum paraoxonase 96.5 1.2 4.1E-05 47.5 30.1 207 399-618 51-308 (355)
329 3sre_A PON1, serum paraoxonase 96.3 0.58 2E-05 50.0 23.0 188 445-643 52-286 (355)
330 1xi4_A Clathrin heavy chain; a 96.3 0.23 7.9E-06 61.6 22.0 233 808-1064 70-332 (1630)
331 1zgk_A Kelch-like ECH-associat 96.3 0.15 5.1E-06 54.1 18.8 235 812-1074 22-296 (308)
332 1tl2_A L10, protein (tachylect 96.3 0.043 1.5E-06 53.0 12.6 189 856-1061 3-206 (236)
333 2uvk_A YJHT; unknown function, 96.2 0.31 1.1E-05 52.8 20.8 241 814-1077 19-354 (357)
334 1tl2_A L10, protein (tachylect 96.0 0.1 3.5E-06 50.4 13.7 150 845-1008 41-206 (236)
335 2woz_A Kelch repeat and BTB do 96.0 0.7 2.4E-05 49.0 22.4 227 420-659 25-292 (318)
336 1zgk_A Kelch-like ECH-associat 95.9 0.23 7.8E-06 52.6 17.9 238 406-657 22-290 (308)
337 2be1_A Serine/threonine-protei 95.8 0.048 1.7E-06 57.7 11.5 198 858-1068 11-236 (339)
338 3pbp_A Nucleoporin NUP82; beta 95.7 0.62 2.1E-05 50.1 19.1 136 509-650 40-208 (452)
339 1xi4_A Clathrin heavy chain; a 95.6 0.38 1.3E-05 59.8 19.5 238 341-613 71-334 (1630)
340 2woz_A Kelch repeat and BTB do 95.5 1.2 4E-05 47.2 21.4 226 824-1074 24-296 (318)
341 3s25_A Hypothetical 7-bladed b 94.9 4.3 0.00015 42.3 23.6 183 340-568 57-258 (302)
342 2uvk_A YJHT; unknown function, 94.8 0.88 3E-05 49.2 18.2 149 510-662 168-350 (357)
343 1cru_A Protein (soluble quinop 94.7 1.3 4.5E-05 49.4 19.6 161 845-1011 27-260 (454)
344 3sbq_A Nitrous-oxide reductase 94.7 5 0.00017 44.7 22.7 195 813-1011 140-409 (638)
345 1cru_A Protein (soluble quinop 94.6 2.9 9.9E-05 46.6 22.0 110 888-999 27-163 (454)
346 1uuj_A Platelet-activating fac 94.5 0.028 9.4E-07 44.6 3.6 54 5-58 10-65 (88)
347 2be1_A Serine/threonine-protei 94.4 0.15 5.1E-06 53.9 10.2 195 458-659 12-236 (339)
348 3b7f_A Glycosyl hydrolase, BNR 92.9 13 0.00043 40.5 27.5 259 803-1071 54-378 (394)
349 2wg3_C Hedgehog-interacting pr 92.6 15 0.00051 40.8 27.1 56 398-453 14-79 (463)
350 2zwa_A Leucine carboxyl methyl 92.3 6.2 0.00021 46.9 20.9 196 813-1014 396-639 (695)
351 3s25_A Hypothetical 7-bladed b 92.3 12 0.00041 38.9 29.4 217 343-612 21-257 (302)
352 3qhy_B Beta-lactamase inhibito 91.4 14 0.00049 37.8 20.2 222 337-610 25-246 (282)
353 4hvt_A Ritya.17583.B, post-pro 90.8 31 0.0011 40.7 27.4 247 338-612 131-431 (711)
354 2zwa_A Leucine carboxyl methyl 90.4 10 0.00036 44.9 20.1 199 452-657 396-638 (695)
355 3q6k_A 43.2 kDa salivary prote 89.6 24 0.00083 37.6 22.2 170 467-641 124-341 (381)
356 4hvt_A Ritya.17583.B, post-pro 89.4 18 0.00063 42.6 20.7 240 405-653 137-429 (711)
357 3q6k_A 43.2 kDa salivary prote 89.3 13 0.00044 39.7 17.5 172 825-998 124-342 (381)
358 3qhy_B Beta-lactamase inhibito 88.7 20 0.00067 36.8 18.2 223 399-655 25-247 (282)
359 2wg3_C Hedgehog-interacting pr 86.5 44 0.0015 37.0 29.0 30 580-609 14-44 (463)
360 2nxp_A Transcription initiatio 85.1 1 3.5E-05 41.3 5.2 59 71-129 51-109 (156)
361 2j4b_A TAF5, transcription ini 84.8 0.78 2.7E-05 40.9 4.1 57 71-128 32-88 (138)
362 4gq2_M Nucleoporin NUP120; bet 78.8 7.7 0.00026 47.8 11.3 42 980-1021 236-277 (950)
363 3uc1_A DNA gyrase subunit A; D 78.1 70 0.0024 33.4 25.9 158 803-967 94-279 (327)
364 4gq2_M Nucleoporin NUP120; bet 76.4 47 0.0016 40.8 17.4 37 846-883 237-273 (950)
365 2j49_A Transcription initiatio 76.1 0.63 2.1E-05 42.0 0.4 53 71-124 34-86 (148)
366 3kci_A Probable E3 ubiquitin-p 72.8 1.1E+02 0.0036 32.9 25.7 162 738-917 107-292 (389)
367 3no0_A DNA gyrase subunit A; D 67.4 1.1E+02 0.0037 30.9 21.3 191 810-1010 31-246 (276)
368 1zi0_A DNA gyrase subunit A; b 67.0 1.2E+02 0.0041 31.2 28.4 151 746-918 108-277 (307)
369 3no0_A DNA gyrase subunit A; D 66.6 1.1E+02 0.0039 30.8 20.7 113 803-918 67-196 (276)
370 3zwu_A Alkaline phosphatase PH 60.8 18 0.0006 41.4 8.2 58 940-997 478-548 (592)
371 1suu_A DNA gyrase subunit A; t 59.4 1.6E+02 0.0056 30.2 25.9 202 697-918 6-231 (312)
372 4gco_A Protein STI-1; structur 58.2 42 0.0014 28.9 8.8 98 15-119 23-125 (126)
373 4a9v_A PHOX; hydrolase, beta-p 58.1 27 0.00093 39.2 8.8 60 939-998 477-549 (592)
374 3f7f_A Nucleoporin NUP120; nuc 57.9 1.3E+02 0.0046 34.8 14.7 35 847-884 224-258 (729)
375 3mkr_A Coatomer subunit epsilo 57.7 71 0.0024 32.6 11.8 85 5-100 64-156 (291)
376 3kci_A Probable E3 ubiquitin-p 56.8 2.1E+02 0.0071 30.6 25.1 194 806-1010 107-345 (389)
377 3uc1_A DNA gyrase subunit A; D 55.6 2E+02 0.0067 29.9 25.8 255 592-876 4-279 (327)
378 2k9m_A RNA polymerase sigma fa 54.9 15 0.0005 32.2 4.9 36 2-37 18-54 (130)
379 3f7f_A Nucleoporin NUP120; nuc 52.8 32 0.0011 39.9 8.5 37 981-1019 223-259 (729)
380 4fhn_B Nucleoporin NUP120; pro 50.5 4.9 0.00017 50.9 1.6 43 981-1023 239-281 (1139)
381 4fhn_B Nucleoporin NUP120; pro 50.1 55 0.0019 41.3 11.1 37 846-883 239-275 (1139)
382 2zux_A YESW protein; beta-prop 49.6 3.2E+02 0.011 30.6 27.9 296 334-658 177-536 (591)
383 1suu_A DNA gyrase subunit A; t 49.3 2.4E+02 0.0081 29.0 28.8 109 746-876 113-231 (312)
384 3b7f_A Glycosyl hydrolase, BNR 49.3 2.7E+02 0.0091 29.6 34.3 262 397-673 54-390 (394)
385 2wpv_A GET4, UPF0363 protein Y 48.8 37 0.0013 35.0 7.5 23 38-60 17-39 (312)
386 3l6v_A GYRA, DNA gyrase subuni 48.1 2.7E+02 0.0093 29.4 28.2 65 588-653 4-75 (370)
387 3lpz_A GET4 (YOR164C homolog); 46.8 41 0.0014 34.9 7.5 23 38-60 16-41 (336)
388 4ga2_A E3 SUMO-protein ligase 46.0 1.3E+02 0.0046 26.5 10.4 94 21-121 13-111 (150)
389 3mez_B Mannose-specific lectin 43.7 93 0.0032 26.3 8.2 90 948-1072 23-113 (113)
390 2d68_A FOP, FGFR1OP; alpha hel 42.2 24 0.00083 27.7 3.7 28 8-35 21-48 (82)
391 3zwu_A Alkaline phosphatase PH 42.1 73 0.0025 36.3 9.3 64 532-597 477-548 (592)
392 2zux_A YESW protein; beta-prop 39.7 4.5E+02 0.015 29.5 27.2 166 441-620 177-410 (591)
393 2cn3_A Xyloglucanase, beta-1,4 39.3 5.3E+02 0.018 30.3 38.2 432 580-1072 23-562 (737)
394 1zi0_A DNA gyrase subunit A; b 39.0 3.3E+02 0.011 27.8 26.7 192 407-609 1-225 (307)
395 1wp5_A Topoisomerase IV; broke 38.9 3.4E+02 0.012 27.9 26.0 152 747-918 106-277 (323)
396 1wp5_A Topoisomerase IV; broke 38.0 3.6E+02 0.012 27.8 26.1 200 697-918 3-225 (323)
397 4a9v_A PHOX; hydrolase, beta-p 37.4 1.2E+02 0.0043 34.0 9.9 65 532-598 477-549 (592)
398 2vgx_A Chaperone SYCD; alterna 35.9 1.1E+02 0.0038 27.0 8.0 51 44-100 65-115 (148)
399 1vk8_A Hypothetical protein TM 34.1 4.5 0.00015 33.8 -1.7 37 23-60 36-72 (106)
400 3qou_A Protein YBBN; thioredox 33.9 1.5E+02 0.0051 30.0 9.7 101 14-121 126-231 (287)
401 1kdl_A YOPD protein; yersinia, 33.4 24 0.00081 20.2 1.7 16 4-19 3-18 (26)
402 2lni_A Stress-induced-phosphop 32.2 1.7E+02 0.0059 24.3 8.7 88 9-102 20-112 (133)
403 3u4t_A TPR repeat-containing p 31.1 1.5E+02 0.005 29.2 9.0 110 6-119 3-118 (272)
404 3upv_A Heat shock protein STI1 30.2 1.4E+02 0.0048 25.0 7.6 83 14-102 13-100 (126)
405 2kck_A TPR repeat; tetratricop 30.2 68 0.0023 25.9 5.3 55 44-102 50-105 (112)
406 4h3o_A Lectin; cadmium, plant 29.4 2.4E+02 0.0082 23.2 9.9 81 747-873 19-99 (105)
407 2xcb_A PCRH, regulatory protei 28.9 1.6E+02 0.0053 25.6 7.8 14 46-59 64-77 (142)
408 3mkr_A Coatomer subunit epsilo 28.8 2.7E+02 0.0093 28.0 10.7 107 5-119 100-210 (291)
409 2xz2_A CSTF-50, isoform B; RNA 28.1 65 0.0022 23.8 3.7 32 3-34 14-45 (66)
410 4asv_A Small glutamine-rich te 27.9 34 0.0012 27.3 2.4 19 1-19 15-33 (92)
411 3gyz_A Chaperone protein IPGC; 27.8 1.1E+02 0.0039 27.3 6.6 86 7-104 10-102 (151)
412 1elw_A TPR1-domain of HOP; HOP 27.7 2.3E+02 0.008 22.6 8.6 101 9-116 8-113 (118)
413 3sz7_A HSC70 cochaperone (SGT) 26.7 1.2E+02 0.0042 27.1 6.8 90 7-102 12-107 (164)
414 2ion_A PDCD4, programmed cell 26.1 92 0.0032 28.0 5.4 20 80-99 15-34 (152)
415 2k9l_A RNA polymerase sigma fa 26.1 52 0.0018 25.5 3.3 36 2-37 27-63 (76)
416 2zuy_A YESX protein; beta-prop 25.7 7.6E+02 0.026 27.8 26.1 246 344-636 108-430 (620)
417 2nsz_A Programmed cell death p 25.6 1E+02 0.0034 26.9 5.4 20 80-99 13-32 (129)
418 1elr_A TPR2A-domain of HOP; HO 24.7 1.9E+02 0.0065 23.8 7.5 94 9-102 7-107 (131)
419 3q49_B STIP1 homology and U bo 24.4 1.6E+02 0.0055 24.9 7.0 90 6-101 9-104 (137)
420 2vyi_A SGTA protein; chaperone 23.0 2.9E+02 0.01 22.5 8.4 89 8-102 14-108 (131)
421 3iug_A RHO/CDC42/RAC GTPase-ac 22.8 61 0.0021 31.7 3.9 40 7-49 39-78 (229)
422 3u4t_A TPR repeat-containing p 22.2 4.4E+02 0.015 25.4 10.8 53 44-102 118-170 (272)
423 3mez_A Mannose-specific lectin 22.2 3.3E+02 0.011 22.6 8.0 79 891-996 22-100 (111)
424 1oyi_A Double-stranded RNA-bin 21.8 60 0.002 25.6 2.8 30 6-37 16-45 (82)
425 3vtx_A MAMA; tetratricopeptide 21.8 2.4E+02 0.0081 25.5 8.0 49 12-60 11-65 (184)
426 2dah_A Ubiquilin-3; UBA domain 21.6 97 0.0033 22.1 3.6 32 13-59 13-47 (54)
427 4gyw_A UDP-N-acetylglucosamine 21.1 4E+02 0.014 31.3 11.2 111 4-121 7-123 (723)
428 2ibo_A Hypothetical protein SP 21.0 10 0.00035 31.6 -1.8 35 25-60 25-59 (104)
429 4gof_A Small glutamine-rich te 20.4 50 0.0017 23.3 1.8 15 5-19 2-16 (52)
430 4gcn_A Protein STI-1; structur 20.4 1.8E+02 0.006 24.7 6.2 101 14-116 16-123 (127)
431 1lxj_A YBL001C, hypothetical 1 20.4 11 0.00037 31.6 -1.8 39 21-60 25-63 (104)
432 2ho1_A Type 4 fimbrial biogene 20.3 4.4E+02 0.015 25.1 10.2 15 45-59 82-96 (252)
433 1zbp_A Hypothetical protein VP 20.2 53 0.0018 32.7 2.7 53 12-64 4-61 (273)
434 1yqh_A DUF77, IG hypothetical 20.1 13 0.00043 31.4 -1.5 36 24-60 29-64 (109)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-68 Score=645.37 Aligned_cols=566 Identities=22% Similarity=0.339 Sum_probs=488.3
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
+.|+||++.|+|++|||||++ ||+|+.|++|+|||. +++++.. +.+|...|.+++|+||
T Consensus 10 ~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fspd 68 (577)
T 2ymu_A 10 NRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSPD 68 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECTT
T ss_pred eEECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECCC
Confidence 358899999999999999995 899999999999995 6776654 7789999999999999
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 488 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~ 488 (1093)
|++||+++.|++|+|||.. ++.+ ..+.+|...|.+++|+||++ ++++++.|+.+++|+.. ........+|...
T Consensus 69 g~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~ 141 (577)
T 2ymu_A 69 GQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSS 141 (577)
T ss_dssp SSEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSC
T ss_pred CCEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCc
Confidence 9999999999999999965 4433 37889999999999999999 89999999999999954 4556677789999
Q ss_pred eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001352 489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 568 (1093)
Q Consensus 489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 568 (1093)
+..+.+.+ ++..+++++.++.+++|+... ........+...+.++.++|+++++++++. ++.|++||. +++.
T Consensus 142 v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~ 213 (577)
T 2ymu_A 142 VWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQL 213 (577)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCE
T ss_pred eeeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcE
Confidence 99998854 667899999999999998543 445566678889999999999999999986 677999995 5777
Q ss_pred eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352 569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 648 (1093)
Q Consensus 569 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 648 (1093)
+..+.+|. ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++.+++++.|+.++
T Consensus 214 ~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~ 287 (577)
T 2ymu_A 214 LQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVK 287 (577)
T ss_dssp EEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEEecCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 88888877 89999999999999999999999999996 46677777655 45689999999999999999999999
Q ss_pred EEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccc
Q 001352 649 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 728 (1093)
Q Consensus 649 iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 728 (1093)
+|+.. ++....+.+|...+.+++++ |+++.+++++.|+.+++|+...... . .
T Consensus 288 ~w~~~-~~~~~~~~~h~~~v~~~~~~----------------------~~~~~l~t~~~d~~i~~w~~~~~~~---~--~ 339 (577)
T 2ymu_A 288 LWNRN-GQLLQTLTGHSSSVWGVAFS----------------------PDGQTIASASDDKTVKLWNRNGQHL---Q--T 339 (577)
T ss_dssp EEETT-SCEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTSCEE---E--E
T ss_pred EEeCC-CcEEEEEecCCCCeEEEEEC----------------------CCCCEEEEEeCCCeEEEEeCCCCee---E--E
Confidence 99965 56777888999999988886 7888999999999999999653211 1 1
Q ss_pred cCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeE
Q 001352 729 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 808 (1093)
Q Consensus 729 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 808 (1093)
+ .+|...+.+++|+|+++.+++++.+|.+++|+... ..+.... +|...|.+
T Consensus 340 ~--~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~~~----~~~~~v~~ 390 (577)
T 2ymu_A 340 L--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQTLT----GHSSSVRG 390 (577)
T ss_dssp E--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEEEEE----CCSSCEEE
T ss_pred E--eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEEEec----CCCCCeEE
Confidence 1 34778999999999999999999999999998432 1122221 38889999
Q ss_pred EEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccccc
Q 001352 809 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 887 (1093)
Q Consensus 809 l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~ 887 (1093)
++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|.
T Consensus 391 ~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~ 467 (577)
T 2ymu_A 391 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHS 467 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCS
T ss_pred EEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCC
Confidence 99999999999998 699999995 5788889999999999999999 8999999999999999996 578888999999
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcC
Q 001352 888 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAE 966 (1093)
Q Consensus 888 ~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~ 966 (1093)
..|++++|+||+++|++++.|+.|++||... + .++...+|.. .|++++|+|||++||+ +.|+.|++||.
T Consensus 468 ~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~---~v~~l~~s~dg~~l~s~~~dg~v~lwd~- 537 (577)
T 2ymu_A 468 SSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR- 537 (577)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS---CEEEEEECTTSSCEEEEETTSEEEEECT-
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCCC---CEEEEEEcCCCCEEEEEECcCEEEEEeC-
Confidence 9999999999999999999999999999754 2 3344455554 7999999999999998 57899999996
Q ss_pred CcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001352 967 ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1007 (1093)
Q Consensus 967 ~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd 1007 (1093)
+++++.. +.+|...|++++|+|||++|+|++.|++|++||
T Consensus 538 ~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 538 NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 5777776 568999999999999999999999999999997
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-66 Score=627.36 Aligned_cols=564 Identities=21% Similarity=0.313 Sum_probs=482.9
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
|.||++.|++++|||||++||+|+.|++|+|||. +++.++ .+.+|.+.|++++|+||++ +|++++.|++|+|||
T Consensus 12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~---~l~gh~~~V~~l~fspdg~--~las~~~d~~i~vWd 85 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ---TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWN 85 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEE---EEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEE---EEeCCCCCEEEEEECCCCC--EEEEEeCCCEEEEEE
Confidence 8899999999999999999999999999999996 455443 7889999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
.+++++..+.+|...|.+++|+| ++.+|++++.|+.+++|+... ........+...+..+.++|++..++.++.
T Consensus 86 -~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-- 159 (577)
T 2ymu_A 86 -RNGQLLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD-- 159 (577)
T ss_dssp -TTSCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTC-CEEEEECCCSSCEEEEEECTTSSCEEEEET--
T ss_pred -CCCCEEEEEECCCCCEEEEEECC--CCCEEEEEcCCCceeeccccc-ceeeeccCCCCceeeeeeecCCccceeccc--
Confidence 57889999999999999999965 678999999999999999754 445566778889999999999999998875
Q ss_pred CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
+..+.+|+... ........+. ..+.++.++|+++++++++.||.|++||. +++.+..+..+. ..|.+++|+
T Consensus 160 --~~~~~~~~~~~-~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~--~~v~~~~~s 230 (577)
T 2ymu_A 160 --DKTVKLWNRNG-QLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVRGVAFS 230 (577)
T ss_dssp --TSEEEEECTTS-CEEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS--SCEEEEEEC
T ss_pred --ccceeccccce-eeeeeccCCC---cceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCC--CCEEEEEEC
Confidence 56688898654 4445555555 88999999999999999999999999996 567777777653 468999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352 633 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 712 (1093)
Q Consensus 633 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 712 (1093)
|++++|++++.|+.|++|+.. ++.+..+.+|...+.+++|+ |+++.+++++.|+.++
T Consensus 231 ~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~----------------------~d~~~l~~~~~d~~i~ 287 (577)
T 2ymu_A 231 PDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFR----------------------PDGQTIASASDDKTVK 287 (577)
T ss_dssp TTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEE
T ss_pred CCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEc----------------------CCCCEEEEEeCCCEEE
Confidence 999999999999999999964 56778888899999988886 7888899999999999
Q ss_pred ecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCce
Q 001352 713 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 792 (1093)
Q Consensus 713 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1093)
+|+.... .. ....+|...|.+++|+|+++.+++++.||.+++|+..... +
T Consensus 288 ~w~~~~~----~~---~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-----------------------~ 337 (577)
T 2ymu_A 288 LWNRNGQ----LL---QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-----------------------L 337 (577)
T ss_dssp EEETTSC----EE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------E
T ss_pred EEeCCCc----EE---EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------------------e
Confidence 9995421 11 1113488899999999999999999999999999854321 2
Q ss_pred eeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001352 793 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 871 (1093)
Q Consensus 793 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~i 871 (1093)
... . +|...+.+++|+|+++++++++ ++.+++||. +++.+..+..|...|++++|+| ++++|++++.|+.|++
T Consensus 338 ~~~--~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 338 QTL--T--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKL 411 (577)
T ss_dssp EEE--C--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEE
T ss_pred EEE--e--CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEE
Confidence 221 1 3888999999999999999998 699999995 5788889999999999999999 9999999999999999
Q ss_pred EEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCE
Q 001352 872 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 951 (1093)
Q Consensus 872 wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 951 (1093)
||. +++.+..+.+|...|++++|+||+++|++++.|+.|++||.... .+....+|.. .|.+++|+||+++
T Consensus 412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~~ 481 (577)
T 2ymu_A 412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQT 481 (577)
T ss_dssp ECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSCE
T ss_pred EeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCCC---CEEEEEEcCCCCE
Confidence 995 57888899999999999999999999999999999999998652 2333344443 7999999999999
Q ss_pred EEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCC
Q 001352 952 FLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCL 1030 (1093)
Q Consensus 952 l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1093)
|++ +.|+.|++||. +++++.. +.+|...|++++|||||++|++++.||.|++||. +++.+..+. .|..
T Consensus 482 las~~~d~~i~iw~~-~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--------~h~~ 550 (577)
T 2ymu_A 482 IASASDDKTVKLWNR-NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--------GHSS 550 (577)
T ss_dssp EEEEETTSEEEEEET-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--------CCSS
T ss_pred EEEEeCCCEEEEEcC-CCCEEEE-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--------CCCC
Confidence 999 57899999995 5777766 5689999999999999999999999999999996 567766665 2455
Q ss_pred ccceeEEEeCCCCCCEEEEEeCCCcEEEEe
Q 001352 1031 HVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1060 (1093)
Q Consensus 1031 ~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1060 (1093)
.|. +++|+| |+++|++++.||+|++||
T Consensus 551 ~v~--~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 551 SVW--GVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEE--EEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CEE--EEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 565 678999 689999999999999997
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.3e-66 Score=627.81 Aligned_cols=576 Identities=15% Similarity=0.185 Sum_probs=476.0
Q ss_pred CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 413 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la 413 (1093)
+++.+.+++|||||++ ||+++ ++.|+|||+.+++.... +.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEEE
Confidence 5678899999999995 77776 57999999998877654 778999999999999999999
Q ss_pred EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC----CcEEEEECCCCceeEEeecCCCCe
Q 001352 414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGAPV 489 (1093)
Q Consensus 414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~~h~~~v 489 (1093)
+|+.|++|+|||+.+++... ...+.+|.++|.+++|+||++ .|++++.+ +.|++|| +++.+..+.+|...|
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM 150 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence 99999999999998665432 236778999999999999999 67777754 3566676 677888899999999
Q ss_pred EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352 490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 569 (1093)
Q Consensus 490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 569 (1093)
++++|+|.. ...|++++.|++|++||..+.+....+..|...|.+++|+|||++|++++. ++.|++||..+++.+
T Consensus 151 ~~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 151 NSVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKT 225 (611)
T ss_dssp EEEEECSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEE
T ss_pred eEEEECCCC-CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEe
Confidence 999997642 136999999999999999888888889999999999999999999999986 667999999999988
Q ss_pred eeee-------cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCC-CCCceEEEecCCCEEEEE
Q 001352 570 RTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAVI 641 (1093)
Q Consensus 570 ~~~~-------~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~ 641 (1093)
..+. +|. ..|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.| ++..++++
T Consensus 226 ~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~ 300 (611)
T 1nr0_A 226 GVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSI 300 (611)
T ss_dssp EECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEE
T ss_pred eeeccccccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEE
Confidence 8774 455 89999999999999999999999999999999998888654221 12234444 78899999
Q ss_pred ECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccC
Q 001352 642 ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP 721 (1093)
Q Consensus 642 ~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~ 721 (1093)
+.|+.+++|+...+.....+.+|...|.+++|+ |+++++++++.|++|++||+..+..
T Consensus 301 s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 301 SANGFINFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp ETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTTCCE
T ss_pred eCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe----------------------CCCCEEEEEeCCCcEEEEECCCCce
Confidence 999999999999888888889999999999986 7899999999999999999864332
Q ss_pred ccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCC
Q 001352 722 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN 801 (1093)
Q Consensus 722 ~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1093)
.. .....|...|.+++|++++ .+++++.|+.+++|+........ .. .....
T Consensus 359 ~~-----~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~-----------------~~-~~~~~----- 409 (611)
T 1nr0_A 359 NR-----VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDS-----------------SK-AVANK----- 409 (611)
T ss_dssp EE-----CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCT-----------------TS-CCEEE-----
T ss_pred ee-----ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccc-----------------cc-eeeee-----
Confidence 11 1123588899999999877 58899999999999876432100 00 00001
Q ss_pred CCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce--
Q 001352 802 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-- 879 (1093)
Q Consensus 802 ~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~-- 879 (1093)
......+++|+|+|+.++++.++.+++|+ .++ +..+. |...+.+++|+| |+++||+|+.|++|++||+.+++.
T Consensus 410 ~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~ 484 (611)
T 1nr0_A 410 LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSE 484 (611)
T ss_dssp CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEE
T ss_pred cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceee
Confidence 23346789999999999888889999998 344 55554 778899999999 999999999999999999987653
Q ss_pred eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeC
Q 001352 880 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE 957 (1093)
Q Consensus 880 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d 957 (1093)
+.. .+|...|++++|||||++|++++.|++|++|++.+ ++... .....+|.. .|.+++|||||++||+ +.|
T Consensus 485 ~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~~---~V~~v~fspdg~~lasgs~D 557 (611)
T 1nr0_A 485 VKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHTA---KVACVSWSPDNVRLATGSLD 557 (611)
T ss_dssp EEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCSS---CEEEEEECTTSSEEEEEETT
T ss_pred eec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeeccc---ceeEEEECCCCCEEEEEECC
Confidence 234 67999999999999999999999999999999986 33211 001223443 7999999999999999 689
Q ss_pred CeEEEEEcCCcceee-eeecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001352 958 THLAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus 958 ~~i~vwd~~~~~~~~-~~~~~h-~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
++|++||+.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 558 ~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 558 NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred CcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999999999876433 446789 89999999999998 9999999999999984
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.8e-63 Score=600.26 Aligned_cols=572 Identities=11% Similarity=0.108 Sum_probs=455.5
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC
Q 001352 395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 474 (1093)
Q Consensus 395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 474 (1093)
.+.+.+.+++|+|||++||+++ +++|++|++.+++... .+.+|...|++++|+|||+ +|++|+.|++|+|||+.
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~~ 89 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDTT 89 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEESS
T ss_pred cccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCc--EEEEEeCCCCEEEeECC
Confidence 4678899999999999999997 5699999998876554 6889999999999999999 89999999999999997
Q ss_pred CCc--eeEEeecCCCCeEEeeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCC-EEEE
Q 001352 475 TGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFS 547 (1093)
Q Consensus 475 ~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~ 547 (1093)
+++ ....+.+|.++|.+++|+| ++++|++++.+ +.|++|| .+.....+.+|...|.+++|+|++. .|++
T Consensus 90 ~~~~~~~~~~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s 165 (611)
T 1nr0_A 90 QTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIIS 165 (611)
T ss_dssp STTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred CCcceeeEeecccCCceEEEEECC--CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEE
Confidence 654 4567889999999999965 66789888865 3677776 4556667788999999999999987 5888
Q ss_pred EecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-----CC
Q 001352 548 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GG 622 (1093)
Q Consensus 548 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~ 622 (1093)
++. ++.|++||..+++....+.+|. ..|.+++|+|++++|++++.|++|++||..+++.+..+... .+
T Consensus 166 ~s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h 238 (611)
T 1nr0_A 166 GSD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 238 (611)
T ss_dssp EET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred EeC----CCeEEEEECCCCeEeeeecccc---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccccc
Confidence 876 6679999999999999999888 89999999999999999999999999999999988877421 34
Q ss_pred CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccc---cceeeeecCCCceeeeeccCCceEecCCCCCCC
Q 001352 623 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD---NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV 699 (1093)
Q Consensus 623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 699 (1093)
...|.+++|+|+|++|++++.|++|++||+.+++.+..+..+.. ....+. .++
T Consensus 239 ~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~ 294 (611)
T 1nr0_A 239 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WTK 294 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------ECS
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE------------------------EcC
Confidence 55799999999999999999999999999998877766543211 111111 246
Q ss_pred ccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCccccccc
Q 001352 700 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKV 779 (1093)
Q Consensus 700 ~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 779 (1093)
+.+++++.|+.+++|+....... ....+|...|.+++|+|+|++|++++.|+.+++|++...
T Consensus 295 ~~l~s~s~d~~i~~~~~~~~~~~------~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~------------ 356 (611)
T 1nr0_A 295 QALVSISANGFINFVNPELGSID------QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG------------ 356 (611)
T ss_dssp SCEEEEETTCCEEEEETTTTEEE------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC------------
T ss_pred CEEEEEeCCCcEEEEeCCCCCcc------eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC------------
Confidence 78999999999999996543211 112358899999999999999999999999999986543
Q ss_pred CCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEE---ECCCCCCeEEEEEcCCC
Q 001352 780 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPHD 856 (1093)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d 856 (1093)
.+.... ..+|...|.+++|++++.++..+.|+.+++|+..++..... .........+++|+| +
T Consensus 357 ----------~~~~~~---~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-d 422 (611)
T 1nr0_A 357 ----------ISNRVF---PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-D 422 (611)
T ss_dssp ----------CEEECS---SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-T
T ss_pred ----------ceeeec---ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-C
Confidence 211111 12488999999999887655555589999999876543210 001234567899999 8
Q ss_pred CCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccC
Q 001352 857 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 936 (1093)
Q Consensus 857 ~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 936 (1093)
+++++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++.... ... .+|.
T Consensus 423 g~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~-- 491 (611)
T 1nr0_A 423 GDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP-- 491 (611)
T ss_dssp SSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS--
T ss_pred CcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC--
Confidence 8777766 467899998 344 55554 88899999999999999999999999999998754321 122 2333
Q ss_pred CCCceEEEEccCCCEEEE-EeCCeEEEEEcCC-cceeee-eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 001352 937 APSETHIQFHKDQTRFLL-VHETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1013 (1093)
Q Consensus 937 ~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~-~~~~~~-~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~ 1013 (1093)
..|.+++|||||++|++ +.|++|++|++.+ ++.... ...+|...|.+++|||||++|++++.|++|++|++.++..
T Consensus 492 -~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 492 -AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp -SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred -CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence 37999999999999999 5789999999988 655544 3445999999999999999999999999999999998753
Q ss_pred EE-EeccccccCCCCC-CCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352 1014 QC-RILSTAYLRPTTS-CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 1014 ~~-~~~~~~~~~~~~~-~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
.. ... ..| ...|. +++|+| |+. |++++.||+|++|+++
T Consensus 571 ~~~~~~-------~~h~~~~v~--~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 571 HPIIIK-------GAHAMSSVN--SVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp CCEEET-------TSSTTSCEE--EEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred ccchhh-------ccCcccCee--EEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 21 111 113 34455 678888 456 9999999999999983
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.8e-64 Score=661.43 Aligned_cols=617 Identities=14% Similarity=0.184 Sum_probs=511.5
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
..+.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+.. +.+|...|.+++|+||
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~ 668 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSD 668 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTT
T ss_pred EEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecC
Confidence 35779999999999999999 589999999999999999988765 6789999999999999
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 488 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~ 488 (1093)
|++||+++.|++|++||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|...
T Consensus 669 ~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~ 745 (1249)
T 3sfz_A 669 DSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNS 745 (1249)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSC
T ss_pred CCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCC
Confidence 9999999999999999999987655 6789999999999999765558999999999999999999999999999999
Q ss_pred eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC-------------CCceEEEEEccCCCEEEEEecCCCCc
Q 001352 489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------------GLGCTRMAYSANGRRLFSCGTSKEGE 555 (1093)
Q Consensus 489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-------------~~~v~~~~~s~d~~~l~~~~~~~~~~ 555 (1093)
|.+++|++ ++.++++++.||.|++||+.+......+... ...+.+++|+|+|+.+++++ +
T Consensus 746 v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~ 818 (1249)
T 3sfz_A 746 VNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----K 818 (1249)
T ss_dssp EEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----T
T ss_pred EEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----C
Confidence 99999965 6679999999999999999887765544321 23678899999999999987 4
Q ss_pred eeEEEEeCCCCeeeeeee-cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC
Q 001352 556 SFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 634 (1093)
Q Consensus 556 ~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 634 (1093)
+.+.+||..++.....+. +|. ..+.+++|+|+++++++++.||.|++||+.++..+..+..+ ...|.+++|+|+
T Consensus 819 ~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spd 893 (1249)
T 3sfz_A 819 NKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPD 893 (1249)
T ss_dssp TEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTT
T ss_pred CcEEEEEecCCCceeEEcCCCC---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEECCC
Confidence 569999999998887776 444 89999999999999999999999999999999999888765 456999999999
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceec
Q 001352 635 GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVE 714 (1093)
Q Consensus 635 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w 714 (1093)
|+++++++.||.+++|+..+......... .......+ .+++..++.....+.+.++
T Consensus 894 g~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 949 (1249)
T 3sfz_A 894 GSSFLTASDDQTIRVWETKKVCKNSAIVL--KQEIDVVF----------------------QENETMVLAVDNIRGLQLI 949 (1249)
T ss_dssp SSEEEEEETTSCEEEEEHHHHHSCCSSSE--EEEEEEEE----------------------ETTEEEEEEEESSSSEEEE
T ss_pred CCEEEEEeCCCeEEEEEccccceeeeecc--cceeeEEE----------------------cCCCcEEEEecCCcceEEE
Confidence 99999999999999999764322111110 00111111 1333444445555555555
Q ss_pred ceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceee
Q 001352 715 KPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV 794 (1093)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1093)
....... . ......+.+++|+|+++.+++++.+|.+.+|++.... ....
T Consensus 950 ~~~~~~~---~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~----------------------~~~~ 998 (1249)
T 3sfz_A 950 AGKTGQI---D------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR----------------------VFSS 998 (1249)
T ss_dssp EESSCCE---E------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS----------------------CEEE
T ss_pred ecCcceE---E------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc----------------------eeee
Confidence 5332111 0 1134679999999999999999999999999865432 1222
Q ss_pred ccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001352 795 NDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 873 (1093)
Q Consensus 795 ~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd 873 (1093)
. . +|...|.+++|+|+|+++++++ ||.|++||+.+++... +..|...+.+++|+| ++ .+++++.||.|++||
T Consensus 999 ~--~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 999 G--V--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp C--C--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEE
T ss_pred c--c--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEEEE
Confidence 1 1 4889999999999999999998 7999999999988764 557899999999999 65 567899999999999
Q ss_pred cCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEE
Q 001352 874 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 953 (1093)
Q Consensus 874 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 953 (1093)
+.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++ .+....+|.. .|.+++|+|||++|+
T Consensus 1072 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~la 1143 (1249)
T 3sfz_A 1072 VITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGILLA 1143 (1249)
T ss_dssp TTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSEEE
T ss_pred CCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCEEE
Confidence 99999999999999999999999999999999999999999998865 3445556554 799999999999999
Q ss_pred E-EeCCeEEEEEcCCcceeeee--------ecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccC
Q 001352 954 L-VHETHLAIYEAEELTCLKQW--------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLR 1024 (1093)
Q Consensus 954 ~-~~d~~i~vwd~~~~~~~~~~--------~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 1024 (1093)
+ +.||.|++||+.+++.+..+ ..+|.+.|++++|||||++|++++ |.|++||+.+++.+..+..
T Consensus 1144 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~----- 1216 (1249)
T 3sfz_A 1144 TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT----- 1216 (1249)
T ss_dssp EEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCC-----
T ss_pred EEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeec-----
Confidence 9 57899999999999887654 256889999999999999999885 8999999999988755541
Q ss_pred CCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352 1025 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus 1025 ~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
|...|. +++|+| |+.+|++++.||.|++|++.+
T Consensus 1217 ---~~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A 1217 ---NGTNLK--KIHVSP-DFRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp ---SSCCCC--CCEECS-SSCCEEEECTTCCEEEECCCC
T ss_pred ---cCCccc--EEEECC-CCCEEEEecCCcEEEEEeecC
Confidence 233344 577888 589999999999999999864
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.8e-60 Score=579.71 Aligned_cols=558 Identities=11% Similarity=0.160 Sum_probs=483.6
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCC----ceeEEeeeeeeecccccceeeeeeecCCCCC-eEEEEECC
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWSP 407 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~s~ 407 (1093)
.|.+.|.+++|||||++ ||+++ ++.|+|||+.++ +.... +.+|... |.+++|+|
T Consensus 16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEECc
Confidence 58889999999999995 77776 789999999988 66554 7789999 99999999
Q ss_pred --CCCEEEEEEcCCEEEEEEccCCC-----cccceEEeccccccEEEEEeeCCCCcEEEEEEcCC----CcEEEEECCCC
Q 001352 408 --DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTG 476 (1093)
Q Consensus 408 --dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~ 476 (1093)
|+++||+++.||.|++||+.+++ .......+.+|...|.+++|+|+++ ++++++.+ +.|++|| ++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~ 150 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG 150 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence 99999999999999999997651 1123336778999999999999999 78888877 6788887 77
Q ss_pred ceeEEeecCCCCeEEeeecccCCcc-EEEEEecCCeEEEEEcCCCCceEEecCCCC---ceEEEEEccC-CCEEEEEecC
Q 001352 477 SRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGTS 551 (1093)
Q Consensus 477 ~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~s~d-~~~l~~~~~~ 551 (1093)
+.+..+.+|...|.+++|++ ++. .+++++.||.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~- 227 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS- 227 (615)
T ss_dssp CEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET-
T ss_pred CcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC-
Confidence 88999999999999999965 444 899999999999999999888888988888 9999999999 999999986
Q ss_pred CCCceeEEEEeCCCCeeeeee-e---cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC--CCC
Q 001352 552 KEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPE 625 (1093)
Q Consensus 552 ~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~ 625 (1093)
++.|++||+.+++.+..+ . .|. ..|.+++|+ +++++++++.||.|++||+.+++.+..+..+.. ...
T Consensus 228 ---dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 300 (615)
T 1pgu_A 228 ---DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQ 300 (615)
T ss_dssp ---TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGC
T ss_pred ---CCeEEEEECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCc
Confidence 667999999999999888 5 555 899999999 999999999999999999999999988876521 124
Q ss_pred CceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceee
Q 001352 626 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 705 (1093)
Q Consensus 626 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~ 705 (1093)
+.++.|+ ++.++++++.+|.|++|++.+++.+..+.+|...+.++++ |. ++++
T Consensus 301 ~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-------------------------l~~~ 353 (615)
T 1pgu_A 301 QVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-------------------------LISG 353 (615)
T ss_dssp EEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-------------------------TEEE
T ss_pred eeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-------------------------cEEE
Confidence 5667775 8999999999999999999998889999999999988887 52 7889
Q ss_pred cccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccC
Q 001352 706 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 785 (1093)
Q Consensus 706 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 785 (1093)
+.|+.+++|++. .+. ..|...|.+++| +++..+++++.|+.+++|++....
T Consensus 354 ~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~----------------- 404 (615)
T 1pgu_A 354 SYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE----------------- 404 (615)
T ss_dssp ETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE-----------------
T ss_pred CCCCeEEEEEch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc-----------------
Confidence 999999999976 111 358889999999 667789999999999999875432
Q ss_pred CCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeC
Q 001352 786 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 865 (1093)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~ 865 (1093)
....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+ +++|++++.
T Consensus 405 ----------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~ 464 (615)
T 1pgu_A 405 ----------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLE 464 (615)
T ss_dssp ----------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEET
T ss_pred ----------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeec
Confidence 1125778999999999999888999999999999988887 88899999998 679999999
Q ss_pred -CCeEEEEEcCCccee-eecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCC-cccCCCCceE
Q 001352 866 -DSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSETH 942 (1093)
Q Consensus 866 -dg~i~iwd~~~~~~~-~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~ 942 (1093)
||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++. +....+ |.. .|++
T Consensus 465 ~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~h~~---~v~~ 536 (615)
T 1pgu_A 465 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KTSRWAFRTS---KINA 536 (615)
T ss_dssp TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EECCSCCCSS---CEEE
T ss_pred CCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----eeEeecCCCC---ceeE
Confidence 999999999988766 77888999999999999999999999999999999998653 334444 443 7999
Q ss_pred EEEcc----------CCCEEEE-EeCCeEEEEEcCCc-ceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001352 943 IQFHK----------DQTRFLL-VHETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus 943 ~~~s~----------dg~~l~~-~~d~~i~vwd~~~~-~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
++|+| ++++|++ +.|+.|++||+.++ +++.. ..+|...|.+++|+|||+ |++++.||+|++|++.+
T Consensus 537 ~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 537 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999 9999999 57899999999998 45554 678999999999999999 99999999999999975
Q ss_pred C
Q 001352 1011 L 1011 (1093)
Q Consensus 1011 ~ 1011 (1093)
+
T Consensus 615 ~ 615 (615)
T 1pgu_A 615 E 615 (615)
T ss_dssp -
T ss_pred C
Confidence 3
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.8e-58 Score=605.26 Aligned_cols=587 Identities=16% Similarity=0.188 Sum_probs=497.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.+|.+.|.+++|||||++||+|+.||+|++||+.+++.+. .+.+|...|.+++|+|+++ ++++++.|++|++||
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIWD 685 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999987555 6789999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
+.+++.+..+.+|...|.+++|++..++.++++++.||.|++||+.++.....+..|...|.+++|+|+++++++++.
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~-- 763 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA-- 763 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES--
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC--
Confidence 999999999999999999999988778889999999999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEeCCCCeeeeeeeccc----------ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 622 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 622 (1093)
++.|++||+.+++....+.... .....+.+++|+|++..+++++ ++.+.+||..++.....+... +
T Consensus 764 --dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~-~ 839 (1249)
T 3sfz_A 764 --DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG-H 839 (1249)
T ss_dssp --SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-S
T ss_pred --CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-C
Confidence 6779999999998776664321 1123688899999999999887 689999999999988877632 2
Q ss_pred CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccc
Q 001352 623 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 702 (1093)
Q Consensus 623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 702 (1093)
...+.+++|+|+++++++++.+|.|++|+..++..+..+.+|...|.+++|+ |+++.+
T Consensus 840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~~l 897 (1249)
T 3sfz_A 840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGSSF 897 (1249)
T ss_dssp SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC----------------------CCCCEE
Confidence 3569999999999999999999999999999999999999999999999986 788899
Q ss_pred eeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCc
Q 001352 703 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 782 (1093)
Q Consensus 703 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 782 (1093)
++++.|+.+++|+.......... .......+.+.+++..++.....+.+.++.....
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 954 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG--------------- 954 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC---------------
T ss_pred EEEeCCCeEEEEEccccceeeee--------cccceeeEEEcCCCcEEEEecCCcceEEEecCcc---------------
Confidence 99999999999997643322211 1223345667777777777777777776653321
Q ss_pred ccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEE
Q 001352 783 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 861 (1093)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la 861 (1093)
..... +...+.+++|+|+++++++++ +|.|++||+.+++....+.+|...|++++|+| ++++|+
T Consensus 955 -------~~~~~-------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~ 1019 (1249)
T 3sfz_A 955 -------QIDYL-------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLI 1019 (1249)
T ss_dssp -------CEEEE-------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEE
T ss_pred -------eEEEc-------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEE
Confidence 11111 456799999999999999998 69999999999999999999999999999999 899999
Q ss_pred EEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCce
Q 001352 862 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 941 (1093)
Q Consensus 862 sg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 941 (1093)
+++.||.|++||+.+++... +.+|...|.+++|+|++ .+++++.|+.|++||+.+++.. ....+|.. .|.
T Consensus 1020 s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~~~~~~~---~v~ 1089 (1249)
T 3sfz_A 1020 SSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIE-----RDFTCHQG---TVL 1089 (1249)
T ss_dssp EECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCC-----EEEECCSS---CCC
T ss_pred EEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCcee-----EEEcccCC---cEE
Confidence 99999999999999988764 56799999999999975 6788999999999999987632 33344443 799
Q ss_pred EEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccc
Q 001352 942 HIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1020 (1093)
Q Consensus 942 ~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~ 1020 (1093)
+++|+||++++++ +.|++|++||+.+++++.. ..+|...|++++|||||++|++++.||.|++||+.+++.+..+.+.
T Consensus 1090 ~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~ 1168 (1249)
T 3sfz_A 1090 SCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1168 (1249)
T ss_dssp CEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCC
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCcceeee-eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccc
Confidence 9999999999999 5889999999999998876 5689999999999999999999999999999999999887665322
Q ss_pred cccCC-CCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001352 1021 AYLRP-TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1066 (1093)
Q Consensus 1021 ~~~~~-~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1066 (1093)
..... ..|...|. +++|+| |+.+|++++ |.|++||+.....
T Consensus 1169 ~~~~~~~~~~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1169 SVEEGTATHGGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp C-------CCSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred cccccccccCceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 21111 12444455 678999 588898885 9999999976543
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-57 Score=567.73 Aligned_cols=593 Identities=11% Similarity=0.099 Sum_probs=447.9
Q ss_pred ccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCE
Q 001352 332 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 411 (1093)
Q Consensus 332 ~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~ 411 (1093)
.||.+.|++++|+|||+ +||+|+.||+|+|||..+++... ...|..+|.+++|+| |++
T Consensus 14 ~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp-g~~ 71 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK-GIY 71 (902)
T ss_dssp EECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-TTE
T ss_pred cCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-CCE
Confidence 48999999999999998 69999999999999998776543 224788999999999 889
Q ss_pred EEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee-----------E
Q 001352 412 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----------Y 480 (1093)
Q Consensus 412 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-----------~ 480 (1093)
|++++.|++|++||+.+++.+. .+. |...|++++|+|+++ ++++|+.||+|++||+.++++. .
T Consensus 72 L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~ 145 (902)
T 2oaj_A 72 LVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSF 145 (902)
T ss_dssp EEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHT
T ss_pred EEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccccccc
Confidence 9999999999999999987655 343 778999999999999 8999999999999999998764 2
Q ss_pred EeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------------------CCceEEEEEccCC
Q 001352 481 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYSANG 542 (1093)
Q Consensus 481 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~v~~~~~s~d~ 542 (1093)
.+.+|.++|.+++|+|. ++..+++|+.||.| +||+++.+....+..+ ...|.+++|+|+|
T Consensus 146 ~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg 223 (902)
T 2oaj_A 146 FPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS 223 (902)
T ss_dssp CSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS
T ss_pred ccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC
Confidence 34679999999999764 34689999999999 9999998877777654 3579999999999
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeeeee--ee---ccc----------ccCCCeEEEEEc----CCC-CEEEEEeCC--
Q 001352 543 RRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFD----TAK-DQILAAGDD-- 600 (1093)
Q Consensus 543 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~v~~v~~~----~~~-~~l~~~~~d-- 600 (1093)
++|++++. ++.|++||+.+++.+.. +. +|. .+...|.+++|+ |++ ..+++|+.+
T Consensus 224 ~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~ 299 (902)
T 2oaj_A 224 LHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISR 299 (902)
T ss_dssp SEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTT
T ss_pred CEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCC
Confidence 99999986 66799999999887653 21 221 123479999995 443 456667665
Q ss_pred ---CcEEEEECC------------------CCceEEEEecCCCCCCCceEEEec----------CCCEEEEEECCCeEEE
Q 001352 601 ---HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENRIKI 649 (1093)
Q Consensus 601 ---g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~i~i 649 (1093)
+.+.+|++. +++....+... +...+..+++.+ ++..+++++.||.|++
T Consensus 300 ~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~ 378 (902)
T 2oaj_A 300 GDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIET 378 (902)
T ss_dssp SSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEE
T ss_pred CCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEE
Confidence 378899852 22334444321 123467777755 3457899999999999
Q ss_pred EEcCCCceee-------ecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCc
Q 001352 650 LETPESNSVD-------AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 722 (1093)
Q Consensus 650 w~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~ 722 (1093)
|++.++.... .+..+...++++++++ ...++|+.......
T Consensus 379 ~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~---------------------------------~~~~~w~~~~~~~~ 425 (902)
T 2oaj_A 379 MLYPSGIFTDKASLFPQNLSWLRPLATTSMAAS---------------------------------VPNKLWLGALSAAQ 425 (902)
T ss_dssp EETTTCCEECCGGGSCGGGTTBTTBEEEEEEEE---------------------------------EEHHHHHHHHHTTB
T ss_pred EECCCCCcccccccCCCcccccCCCeeEEEEEE---------------------------------cCHHHHHHHHhccc
Confidence 9997764332 2334445566655542 12234542211110
Q ss_pred cccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCC
Q 001352 723 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 802 (1093)
Q Consensus 723 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1093)
.. ..+..+|...+.+++|+|+++.+++++.|++|++||+....... ..++.. ......+.+|
T Consensus 426 ~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~~~~~------~l~~~~~~~h 487 (902)
T 2oaj_A 426 NK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NASFEV------NLSRTLNKAK 487 (902)
T ss_dssp CC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TBCEEE------EHHHHTTCSS
T ss_pred CC---CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------CceEEe------echhhcCCCC
Confidence 11 11234577778889999999999999999999999987542100 000000 0000001148
Q ss_pred CCCeeEEEEccCCCEEEEEe-CCeEEEEEccCce---------------------------------------------e
Q 001352 803 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK---------------------------------------------T 836 (1093)
Q Consensus 803 ~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~---------------------------------------------~ 836 (1093)
...|.+++|+|||++||+++ ||+|+|||+.+++ +
T Consensus 488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 567 (902)
T 2oaj_A 488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP 567 (902)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence 89999999999999999998 7999999998762 4
Q ss_pred EEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceee-----ecc-cccCCeEEEEEe-----CCC---CEE
Q 001352 837 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL---NIL 902 (1093)
Q Consensus 837 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----~dg---~~l 902 (1093)
+..+.+|.+.|++++||| || +||+|+.|++|+|||+.++..+. .+. +|.+.|++++|| ||| ++|
T Consensus 568 ~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l 645 (902)
T 2oaj_A 568 STAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILM 645 (902)
T ss_dssp EEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEE
T ss_pred eEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEE
Confidence 677889999999999999 88 99999999999999998876653 344 899999999999 886 899
Q ss_pred EEEeCCCcEEEEeC---CCCceeeeeeeecCCCccc--CCCCceEEE-Ec----------------------cCCCEEEE
Q 001352 903 VSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMT--LAPSETHIQ-FH----------------------KDQTRFLL 954 (1093)
Q Consensus 903 ~s~s~dg~i~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-~s----------------------~dg~~l~~ 954 (1093)
++++.|++|++||+ .+++.. ..+.++.. ....|..++ |+ +++..|++
T Consensus 646 ~sgs~D~tv~~wd~~p~~~g~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~ 720 (902)
T 2oaj_A 646 VCGTDMGEVITYKILPASGGKFD-----VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT 720 (902)
T ss_dssp EEEETTSEEEEEEEEECGGGCEE-----EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE
T ss_pred EEEecCCcEEEEEEecCCCCcEE-----EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE
Confidence 99999999999999 555422 22222221 013566665 65 45554444
Q ss_pred EeCCeEEEEEcCCcceeeeeecCCCCCEEEE---E------EccCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352 955 VHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus 955 ~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~---~------fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
.+..++||++.++++.++. .+|...+.++ . |+++|..|++++.||+|++|++++++.+.....
T Consensus 721 -~~~~ir~~~~~~~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~ 792 (902)
T 2oaj_A 721 -GFDDIRLITLGKSKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI 792 (902)
T ss_dssp -CSSEEEEECTTCCCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred -eccceEEEeCccccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccC
Confidence 4889999999999998876 4566667776 5 789999999999999999999999999988773
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.5e-57 Score=549.70 Aligned_cols=556 Identities=11% Similarity=0.109 Sum_probs=467.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCC----CcccceEEecccccc-EEEEEeeC--CCCcEEEEEEcCC
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDD 465 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~-v~~~~~s~--d~~~l~l~s~~~d 465 (1093)
...|.+.|.+++|+|||++||+++ ++.|++||+.++ +... .+.+|... |++++|+| +++ +|++++.|
T Consensus 14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~d 87 (615)
T 1pgu_A 14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDES 87 (615)
T ss_dssp CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETT
T ss_pred CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCC
Confidence 346889999999999999999998 789999999987 4443 78899999 99999999 999 89999999
Q ss_pred CcEEEEECCCC--------ceeEEeecCCCCeEEeeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCce
Q 001352 466 KTIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGC 533 (1093)
Q Consensus 466 ~~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~v 533 (1093)
|.|++||+.++ +.+..+..|...|.+++|++ ++.+|++++.+ +.|++|| ..+....+..+...|
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v 163 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRI 163 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCE
T ss_pred CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccE
Confidence 99999999855 67788889999999999964 67899999988 6888886 666778888999999
Q ss_pred EEEEEccCCC-EEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCC---CeEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 001352 534 TRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDM 608 (1093)
Q Consensus 534 ~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~v~~~~~-~~~l~~~~~dg~i~iwd~ 608 (1093)
.+++|+|+++ .+++++. ++.|++||..+++.+..+.+|. . .|.+++|+|+ ++++++++.||.|++||+
T Consensus 164 ~~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 164 NACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp EEEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred EEEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 9999999998 7888775 6779999999999999999887 6 8999999999 999999999999999999
Q ss_pred CCCceEEEEecC--CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeeccccc----ccceeeeecCCCceeee
Q 001352 609 NKVQLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVTGA 682 (1093)
Q Consensus 609 ~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~ 682 (1093)
.+++.+..+... .+...|.+++|+ +++++++++.|+.|++||+.+++.+..+..+. ..+.++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 306 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA--------- 306 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE---------
T ss_pred CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe---------
Confidence 999998888321 224569999999 99999999999999999999988877776653 23333332
Q ss_pred eccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEe
Q 001352 683 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW 762 (1093)
Q Consensus 683 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw 762 (1093)
++++++++++.++.+++|++........ ..+|...|.+++| |+ +++++.||.+++|
T Consensus 307 --------------~~~~~l~~~~~~g~i~~~d~~~~~~~~~------~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w 362 (615)
T 1pgu_A 307 --------------TGNGRIISLSLDGTLNFYELGHDEVLKT------ISGHNKGITALTV-NP---LISGSYDGRIMEW 362 (615)
T ss_dssp --------------EETTEEEEEETTSCEEEEETTEEEEEEE------ECCCSSCEEEEET-TT---TEEEETTSCEEET
T ss_pred --------------CCCCeEEEEECCCCEEEEECCCCcEEEE------EeCCCCCEEEEEe-cC---cEEECCCCeEEEE
Confidence 3688899999999999999775332211 1348889999999 88 8999999999998
Q ss_pred eecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEEC
Q 001352 763 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIM 841 (1093)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~ 841 (1093)
++. ++. .+|...|.+++| +++..+++++ |+.+++|++.+++...
T Consensus 363 ~~~-------------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~--- 407 (615)
T 1pgu_A 363 SSS-------------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS--- 407 (615)
T ss_dssp TTT-------------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS---
T ss_pred Ech-------------------------hhc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC---
Confidence 753 011 148899999999 5566677766 7999999998765432
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCCCCc
Q 001352 842 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWG 920 (1093)
Q Consensus 842 ~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-dg~i~iwd~~~~~ 920 (1093)
.+.+++|+| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.+++
T Consensus 408 ----~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~ 478 (615)
T 1pgu_A 408 ----QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE 478 (615)
T ss_dssp ----CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE
T ss_pred ----CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcc
Confidence 688999999 88888877 88999999999999888887 88999999999 899999999 9999999999854
Q ss_pred eeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEcc----------
Q 001352 921 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC---------- 989 (1093)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~---------- 989 (1093)
... ....++.. .|.+++|+|+|++|++ +.|+.|++||+.+++.+..+...|...|++++|+|
T Consensus 479 ~~~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~ 551 (615)
T 1pgu_A 479 VSF----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEI 551 (615)
T ss_dssp EEE----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CC
T ss_pred ccc----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccccc
Confidence 221 33444443 7999999999999999 57899999999999998875544999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC-ceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352 990 DCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 990 dg~~l~t~~~dg~v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
|+++|++++.||.|++||+.++ ..+..+. .|...|. +++|+| |+. |++++.||+|++|++.
T Consensus 552 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~h~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 552 EEDLVATGSLDTNIFIYSVKRPMKIIKALN--------AHKDGVN--NLLWET-PST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp SCCEEEEEETTSCEEEEESSCTTCCEEETT--------SSTTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC
T ss_pred CCCEEEEEcCCCcEEEEECCCCceechhhh--------cCccceE--EEEEcC-CCC-eEEecCCceEEEEeee
Confidence 9999999999999999999998 5665544 2345555 667888 467 9999999999999985
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-56 Score=554.05 Aligned_cols=618 Identities=9% Similarity=0.044 Sum_probs=444.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
..+|...|.+++|+|++++||+|+.||+|+||+..+++... ...|..+|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 45799999999999999999999999999999988764322 235888999999999 77 799999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce-----------EEecCCCCceEEEEEccC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN 541 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~s~d 541 (1093)
+.+++++..+. |...|++++|++ ++.++++|+.||.|++||+++.... .....|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999999886 778999999965 6689999999999999999876643 123457789999999996
Q ss_pred C-CEEEEEecCCCCceeEEEEeCCCCeeeeeeecc---------------cccCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001352 542 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI 605 (1093)
Q Consensus 542 ~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~v~~~~~~~~l~~~~~dg~i~i 605 (1093)
+ ..+++++. ++.| +||+++++.++.+.++ ..|...|.+++|+|++++|++++.||+|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777664 6779 9999999998888766 112367999999999999999999999999
Q ss_pred EECCCCceEEEEec-----CC-----------CCCCCceEEEec----CC-CEEEEEECC-----CeEEEEEcCC-----
Q 001352 606 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPE----- 654 (1093)
Q Consensus 606 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~~-~~l~~~~~d-----g~i~iw~~~~----- 654 (1093)
||+.+++++..... +. +...|.+++|++ ++ .++++++.+ +.+.+|++..
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 99999988764221 21 123588999964 43 567777665 3788888531
Q ss_pred -------------Cceeeecc-cccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeecc
Q 001352 655 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 720 (1093)
Q Consensus 655 -------------~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~ 720 (1093)
.+....+. .+...+..+.+.+..... +.+ ..++..+++++.|+.+++|++..+.
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~----------~~g--~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPY----------FAG--CHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSH----------HHH--TBSCSEEEEEETTSCEEEEETTTCC
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCC----------cCC--CCCceeEEEEcCCCcEEEEECCCCC
Confidence 11111111 123344444443211000 000 1345578888899999999974332
Q ss_pred Cccc-cccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCC
Q 001352 721 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 799 (1093)
Q Consensus 721 ~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1093)
.... .........|...|.+++|++... .+|+..... . +... ..+.
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~------------------~-~~~~--~~l~- 432 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSA------------------A-QNKD--YLLK- 432 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHT------------------T-BCCC--CSCC-
T ss_pred cccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhc------------------c-cCCC--Cccc-
Confidence 1110 001111123557888888865332 234321100 0 0000 0122
Q ss_pred CCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeE----EE--EC-----CCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001352 800 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI----LT--IM-----PPSPTATSLAFNPHDNNVIAIGMDDS 867 (1093)
Q Consensus 800 ~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~----~~--~~-----~~~~~i~~l~~s~~d~~~lasg~~dg 867 (1093)
+|...+..++|+||+++|++++ |++|++||+.++... .. +. +|...|.+++|+| |+++||+|+.||
T Consensus 433 -G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dg 510 (902)
T 2oaj_A 433 -GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETG 510 (902)
T ss_dssp -CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTS
T ss_pred -CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCc
Confidence 4777888899999999999998 799999999887421 11 11 7888999999999 999999999999
Q ss_pred eEEEEEcCCcc---------------------------------------------eeeecccccCCeEEEEEeCCCCEE
Q 001352 868 TILIYNARSSE---------------------------------------------VISKLEGHSKRVTGLVFSDALNIL 902 (1093)
Q Consensus 868 ~i~iwd~~~~~---------------------------------------------~~~~l~~h~~~V~~l~~s~dg~~l 902 (1093)
+|+||++.+++ ++..+.+|.+.|++++||||| +|
T Consensus 511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l 589 (902)
T 2oaj_A 511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV 589 (902)
T ss_dssp CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence 99999998762 367788999999999999999 99
Q ss_pred EEEeCCCcEEEEeCCCCceeeeeeeecCC-CcccCCCCceEEEEc-----cCC---CEEEE-EeCCeEEEEEc---CCcc
Q 001352 903 VSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELT 969 (1093)
Q Consensus 903 ~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s-----~dg---~~l~~-~~d~~i~vwd~---~~~~ 969 (1093)
|+|+.|++|+|||+.++.......+.... +|.. .|++++|| ||| ++|++ +.|++|++||+ .+|+
T Consensus 590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred EEEeCCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 99999999999999886543221223343 5554 89999999 886 78888 68899999999 7888
Q ss_pred eeeeeecCC-----CCCEEEEE-Ec----------------------cCCCEEEEEeCCCcEEEEEcCCCceEEEecccc
Q 001352 970 CLKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1021 (1093)
Q Consensus 970 ~~~~~~~~h-----~~~v~~~~-fs----------------------~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~ 1021 (1093)
+...+. +| .++|.+++ |+ ++|.+|+++ +..|+||++.+++...+...
T Consensus 667 ~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~-- 741 (902)
T 2oaj_A 667 FDVQLM-DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFK-- 741 (902)
T ss_dssp EEEEEE-EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECS--
T ss_pred EEEEec-CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcc--
Confidence 776633 44 57787777 76 456555443 77899999999988766531
Q ss_pred ccCCCCCCCccceeE-EE------eCCCCCCEEEEEeCCCcEEEEecCCCCCCcccCCC--cc-ccCCCCCCCCccc
Q 001352 1022 YLRPTTSCLHVYPHA-IA------AHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP--DE-IVGDQPTSTSEGD 1088 (1093)
Q Consensus 1022 ~~~~~~~~~~v~~~~-~~------~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~ 1088 (1093)
|...+..++ +. |++ ++..|++++.||+|++|+++.-+.--....| .+ .....+..+..||
T Consensus 742 ------~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~~~~~~~~~~~~~G~ 811 (902)
T 2oaj_A 742 ------YPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIAAKYITESSVLRNGD 811 (902)
T ss_dssp ------SCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCCHHHHTTCEECTTSC
T ss_pred ------cceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHHhhccCCcccccccccceEEcCCCC
Confidence 111222221 24 666 5789999999999999999876653322222 22 2333455555554
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-47 Score=482.88 Aligned_cols=555 Identities=14% Similarity=0.177 Sum_probs=425.9
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
++|.+|++.|.+++|||||+ +||+|+.||.|+|||+.+++.+.. +.+|..+|.+++|+|+
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~ 66 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIAR 66 (814)
T ss_dssp EEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGG
T ss_pred eeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeCC
Confidence 46789999999999999999 589999999999999999987765 6689999999999999
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-ceeEEeecCCC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGA 487 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~h~~ 487 (1093)
+++||+++.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ ++++++.||.|++||+.++ .....+.+|..
T Consensus 67 ~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 141 (814)
T 3mkq_A 67 KNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141 (814)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSS
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCC
Confidence 9999999999999999999987554 6778999999999999999 7999999999999999987 67788899999
Q ss_pred CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEcc--CCCEEEEEecCCCCceeEEEEeCC
Q 001352 488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNES 564 (1093)
Q Consensus 488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~ 564 (1093)
.|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||..
T Consensus 142 ~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~~ 216 (814)
T 3mkq_A 142 FVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQ 216 (814)
T ss_dssp CEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEETT
T ss_pred cEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEECC
Confidence 9999999652 56799999999999999999888777766655 7899999999 9999999876 6779999999
Q ss_pred CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC--EEEEEE
Q 001352 565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIA 642 (1093)
Q Consensus 565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~ 642 (1093)
+++.+..+.+|. ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+. ..+.+++|+|++. ++++++
T Consensus 217 ~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 217 TKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp TTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCGGGEEEEEE
T ss_pred CCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCCceEEEEEe
Confidence 999999998887 899999999999999999999999999999999998887663 4689999999987 455554
Q ss_pred CCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccc---------ee
Q 001352 643 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS---------EV 713 (1093)
Q Consensus 643 ~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i---------~~ 713 (1093)
++.+.+|++..... .+.++ |+++.+++++.+... ..
T Consensus 292 -~~~~~~~~~~~~~~------------~~~~~----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~ 336 (814)
T 3mkq_A 292 -DNGFTVLSLGNDEP------------TLSLD----------------------PVGKLVWSGGKNAAASDIFTAVIRGN 336 (814)
T ss_dssp -TTEEEEEECSCCSC------------CEEEC----------------------SSSEEEEECCTTSCTTCEEEEECCSC
T ss_pred -CCCEEEEEcCCCCc------------eeEEC----------------------CCCCEEEECcccccceeeeeeecccc
Confidence 67788898765432 22333 444444444333321 01
Q ss_pred cceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCcee
Q 001352 714 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 793 (1093)
Q Consensus 714 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1093)
|+.............. ..+...+.+++|+|+|+.+++++ +|.+.+|++.....
T Consensus 337 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~------------------------ 389 (814)
T 3mkq_A 337 EEVEQDEPLSLQTKEL--GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN------------------------ 389 (814)
T ss_dssp CCCCSSSCBCCCCEEE--CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE------------------------
T ss_pred cccccCccceeeeecC--CCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc------------------------
Confidence 2222211111111111 22556788999999999888887 89999998532110
Q ss_pred eccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCC---CEEEEEeCCCeE
Q 001352 794 VNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN---NVIAIGMDDSTI 869 (1093)
Q Consensus 794 ~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~---~~lasg~~dg~i 869 (1093)
.+...+.+++|+||++++++++ ++.|++|+.. .+|...+.+++|+| ++ .+|++++.|+.|
T Consensus 390 -------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~--------~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~~v 453 (814)
T 3mkq_A 390 -------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNF--------KEVTSWSVPMHSAI-DRLFSGALLGVKSDGFV 453 (814)
T ss_dssp -------EEEEECSEEEECTTSSCEEEECTTCCEEEEETT--------EECTTCCCCCSSCC-CEEECSSSEEEEETTEE
T ss_pred -------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECC--------CCccceEEcCCcCc-cceecceEEEEecCCEE
Confidence 1345678999999999999997 6999999633 34777889999999 77 588889999999
Q ss_pred EEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEE------eCCCcEEEEeCCC---------------Cceeeeeeee
Q 001352 870 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS------GGDAQIFVWDVDG---------------WGIQTCRSLQ 928 (1093)
Q Consensus 870 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~------s~dg~i~iwd~~~---------------~~~~~~~~~~ 928 (1093)
++||+.+++.+..+.+|.. .++|+|||++|+++ +.++.+.+|.-.. +.......+.
T Consensus 454 ~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (814)
T 3mkq_A 454 YFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLY 530 (814)
T ss_dssp EEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEE
T ss_pred EEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeee
Confidence 9999999999999988865 89999999999999 6666555554210 0000001111
Q ss_pred cCCCcccCCCCceEEEEccCCCEEEEEe-CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001352 929 TPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1007 (1093)
Q Consensus 929 ~~~~~~~~~~~v~~~~~s~dg~~l~~~~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd 1007 (1093)
.. ...+.+..|. +..++... .+.+..+- .++... ......++..+.|.+++..++....++.+.+|+
T Consensus 531 ~~------~~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 598 (814)
T 3mkq_A 531 EL------SESITSGKWV--GDVFIFTTATNRLNYFV--GGKTYN--LAHYTKEMYLLGYLARDNKVYLADREVHVYGYE 598 (814)
T ss_dssp EE------CSCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEEE--EEECSSCCEEEEEEGGGTEEEEECTTCCEEEEE
T ss_pred Ee------ccEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeEE--EEECCccEEEEEEEecCCEEEEEcCCCCEEEEE
Confidence 10 0135555654 34443332 34444432 222211 112345677777889999999999999999999
Q ss_pred cCCC
Q 001352 1008 ASNL 1011 (1093)
Q Consensus 1008 ~~~~ 1011 (1093)
+...
T Consensus 599 l~~~ 602 (814)
T 3mkq_A 599 ISLE 602 (814)
T ss_dssp CCHH
T ss_pred ECcH
Confidence 8643
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3e-46 Score=470.05 Aligned_cols=479 Identities=15% Similarity=0.183 Sum_probs=391.6
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.+|.+.|.+++|+|+|++||+++.||.|+|||+.+++.+. .+.+|..+|++++|+|+++ +|++++.||.|++||
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 67899999999999999999999999999999999986554 6779999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEcc-CCCEEEEEec
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT 550 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~ 550 (1093)
+.+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.+. .....+..+...+.+++|+| ++..+++++.
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred CCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999965 6679999999999999999887 45567788899999999999 8889999886
Q ss_pred CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352 551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 628 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 628 (1093)
++.|++||+.++.....+..+. ...+.+++|+| ++.++++++.||.|++||+.+++.+..+..+. ..|.+
T Consensus 162 ----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~ 233 (814)
T 3mkq_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (814)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred ----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEE
Confidence 6779999999888877776654 47899999999 99999999999999999999999998887654 46899
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccc-eeecc
Q 001352 629 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE-ISVEA 707 (1093)
Q Consensus 629 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~s~~~ 707 (1093)
++|+|+++++++++.||.|++|+..+++....+..+...+.+++++ |++..+ ++.+.
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----------------------~~~~~~~~~~~~ 291 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH----------------------PTGRKNYIASGF 291 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEEC----------------------TTCGGGEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEc----------------------cCCCceEEEEEe
Confidence 9999999999999999999999999999999999999999999987 455433 55566
Q ss_pred cccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecccee-EEeeecCcccCcCcccccccCCcccCC
Q 001352 708 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQP 786 (1093)
Q Consensus 708 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v-~vw~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1093)
++.+.+|++.. ....+.++|+|+.+++++.+... .++... ....|+.
T Consensus 292 ~~~~~~~~~~~------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 339 (814)
T 3mkq_A 292 DNGFTVLSLGN------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAV--------------IRGNEEV 339 (814)
T ss_dssp TTEEEEEECSC------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEE--------------CCSCCCC
T ss_pred CCCEEEEEcCC------------------CCceeEECCCCCEEEECcccccceeeeeee--------------ccccccc
Confidence 77788887542 12346788999988877665321 111100 0011333
Q ss_pred CCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001352 787 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 866 (1093)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 866 (1093)
..+............+...+.+++|+|+|+++++++++.+.+|++....... .+.+.+++|+| +++++|+++.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~~ 413 (814)
T 3mkq_A 340 EQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDET 413 (814)
T ss_dssp CSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECTT
T ss_pred ccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeCC
Confidence 3332221111111136677899999999999999999999999987655432 35688999999 89999999999
Q ss_pred CeEEEEEcCCcceeeecccccCCeEEEEEeCCC---CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEE
Q 001352 867 STILIYNARSSEVISKLEGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 943 (1093)
Q Consensus 867 g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 943 (1093)
|.|++|+ .+.+|...|.+++|+||+ ++|++++.|+.|++||+.+++ .+.....+. ..+
T Consensus 414 g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~------~~v 474 (814)
T 3mkq_A 414 GQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVNA------KDV 474 (814)
T ss_dssp CCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSCE------EEE
T ss_pred CcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecCC------CEE
Confidence 9999995 456788889999999998 689999999999999999865 333333332 289
Q ss_pred EEccCCCEEEEE------eCCeEEEEEc
Q 001352 944 QFHKDQTRFLLV------HETHLAIYEA 965 (1093)
Q Consensus 944 ~~s~dg~~l~~~------~d~~i~vwd~ 965 (1093)
+|||||++|+++ .++.+.+|..
T Consensus 475 ~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 475 IWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp EECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred EEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 999999999997 6666666644
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.2e-45 Score=418.00 Aligned_cols=287 Identities=22% Similarity=0.372 Sum_probs=266.2
Q ss_pred hhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352 330 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 409 (1093)
Q Consensus 330 ~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg 409 (1093)
.|.+|.+.|++++|+|+++ ++++|+.||+|+|||+.+++.+.. +.+|...|.+++|+|+|
T Consensus 103 ~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~~ 162 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSG 162 (410)
T ss_dssp EEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTS
T ss_pred eecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCCC
Confidence 3678999999999999998 599999999999999999987765 77899999999999999
Q ss_pred CEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCe
Q 001352 410 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 489 (1093)
Q Consensus 410 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v 489 (1093)
++|++|+.|++|++||+.++++++ .+.+|...|.+++|+|+++ ++++|+.|++|++||+.++.++.++.+|...|
T Consensus 163 ~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v 237 (410)
T 1vyh_C 163 KLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 237 (410)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccE
Confidence 999999999999999999887555 6779999999999999999 89999999999999999999999999999999
Q ss_pred EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC--------------------CCEEEEEe
Q 001352 490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSCG 549 (1093)
Q Consensus 490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d--------------------~~~l~~~~ 549 (1093)
.+++++ +++.++++++.||.|++||+.+......+..|...|.+++|+|+ |.++++++
T Consensus 238 ~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 238 RMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp EEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred EEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence 999885 46789999999999999999999999999999999999999996 66899988
Q ss_pred cCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceE
Q 001352 550 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 629 (1093)
Q Consensus 550 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 629 (1093)
. ++.|++||+.++..+..+.+|. ..|.+++|+|++++|++|+.||+|++||+.+++++..+..|. ..|.++
T Consensus 316 ~----D~~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~--~~v~~l 386 (410)
T 1vyh_C 316 R----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTSL 386 (410)
T ss_dssp T----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEEE
T ss_pred C----CCeEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--CcEEEE
Confidence 6 6779999999999999999988 899999999999999999999999999999999999988664 469999
Q ss_pred EEecCCCEEEEEECCCeEEEEEc
Q 001352 630 CFNKNGTLLAVIANENRIKILET 652 (1093)
Q Consensus 630 ~~s~~~~~l~~~~~dg~i~iw~~ 652 (1093)
+|+|++.+|++++.||+|++|+.
T Consensus 387 ~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 387 DFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EECSSSSCEEEEETTSEEEEEC-
T ss_pred EEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999999999999999999986
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=357.97 Aligned_cols=291 Identities=15% Similarity=0.241 Sum_probs=262.8
Q ss_pred HhhccCCCCceeeeecCC----CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352 329 QTLIEGSSSPMSMDFHPV----QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 404 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spd----g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 404 (1093)
+.+.+|.+.|++++|+|+ ++ +|++|+.|++|+|||+.+++..... .+.+|...|.+++
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~-----------------~l~gh~~~v~~~~ 87 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQW-----------------SLEGHQLGVVSVD 87 (321)
T ss_dssp EETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEE-----------------EECCCSSCEEEEE
T ss_pred eecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeee-----------------eeccCCCCEEEEE
Confidence 346689999999999985 44 6999999999999999877543221 1779999999999
Q ss_pred ECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352 405 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 484 (1093)
Q Consensus 405 ~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 484 (1093)
|+|++.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++++.|+.|++||+.+++....+..
T Consensus 88 ~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~ 162 (321)
T 3ow8_A 88 ISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDT 162 (321)
T ss_dssp ECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEEC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecC
Confidence 99999999999999999999999986554 6778899999999999999 899999999999999999999999999
Q ss_pred CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352 485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 564 (1093)
Q Consensus 485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 564 (1093)
|...|.+++|+| ++.+|++++.||.|++||+.+++....+..+...|.+++|+|++++|++++. ++.|++||+.
T Consensus 163 ~~~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~ 236 (321)
T 3ow8_A 163 RGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQ 236 (321)
T ss_dssp SSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETT
T ss_pred CCceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECC
Confidence 999999999954 6789999999999999999999888899999999999999999999999986 6679999999
Q ss_pred CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC
Q 001352 565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 644 (1093)
Q Consensus 565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 644 (1093)
+++....+.+|. ..|.+++|+|++++|++++.|++|++||+.+++++..+..+. ..|.+++|+|++++|++++.|
T Consensus 237 ~~~~~~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 237 HANLAGTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp TCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEEeCC
Confidence 999999999888 899999999999999999999999999999999999987653 469999999999999999999
Q ss_pred CeEEEEEcC
Q 001352 645 NRIKILETP 653 (1093)
Q Consensus 645 g~i~iw~~~ 653 (1093)
|.|++||..
T Consensus 312 ~~i~vwd~p 320 (321)
T 3ow8_A 312 QEIHIYDCP 320 (321)
T ss_dssp CCEEEEECC
T ss_pred CeEEEEeCC
Confidence 999999964
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.8e-39 Score=360.76 Aligned_cols=291 Identities=19% Similarity=0.277 Sum_probs=262.5
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
++|.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.. +..|...|.+++|+|+
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~ 108 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAYAPS 108 (340)
T ss_dssp EEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEEECTT
T ss_pred eeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEEECCC
Confidence 56889999999999999998 599999999999999999987765 5679999999999999
Q ss_pred CCEEEEEEcCCEEEEEEccCCCc-ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 487 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~ 487 (1093)
|++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|..
T Consensus 109 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~ 185 (340)
T 1got_B 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTG 185 (340)
T ss_dssp SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCC
Confidence 99999999999999999987642 233446789999999999999875 88999999999999999999999999999
Q ss_pred CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352 488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 567 (1093)
Q Consensus 488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 567 (1093)
.|.+++|++ ++.++++++.||.|++||+++......+..|...|.+++|+|+++++++++. ++.|++||+.+++
T Consensus 186 ~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~~~~ 259 (340)
T 1got_B 186 DVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRADQ 259 (340)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTE
T ss_pred ceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCc
Confidence 999999965 6679999999999999999999999999999999999999999999999986 6679999999988
Q ss_pred eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeE
Q 001352 568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 647 (1093)
Q Consensus 568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 647 (1093)
.+..+.... +...|.+++|+|+++++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+|.+|++++.|+.|
T Consensus 260 ~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 260 ELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp EEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSCE
T ss_pred EEEEEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEcCCccE
Confidence 877665322 23579999999999999999999999999999999998888664 469999999999999999999999
Q ss_pred EEEE
Q 001352 648 KILE 651 (1093)
Q Consensus 648 ~iw~ 651 (1093)
++|+
T Consensus 337 ~iWd 340 (340)
T 1got_B 337 KIWN 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9996
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.2e-39 Score=363.94 Aligned_cols=295 Identities=18% Similarity=0.244 Sum_probs=265.5
Q ss_pred HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
.++|.+|++.|++++|+||++ +||+|+.||+|+|||..+++.... +..|...|.+++|+|
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~sp 116 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAYAP 116 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEECT
T ss_pred EEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEECC
Confidence 457889999999999999998 599999999999999999887764 556889999999999
Q ss_pred CCCEEEEEEcCCEEEEEEccCCCc---ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352 408 DGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 484 (1093)
Q Consensus 408 dg~~las~~~d~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 484 (1093)
+|.+||+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .+++++.|++|++||+.+++++..+.+
T Consensus 117 ~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~~ 194 (354)
T 2pbi_B 117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFHG 194 (354)
T ss_dssp TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEcC
Confidence 999999999999999999875421 223446778999999999999998 799999999999999999999999999
Q ss_pred CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352 485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 564 (1093)
Q Consensus 485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 564 (1093)
|...|.++++++.+++.+|++|+.||.|++||++++.....+..|...|.+++|+|++.++++++. ++.|++||++
T Consensus 195 h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~~ 270 (354)
T 2pbi_B 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYDLR 270 (354)
T ss_dssp CSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEECC
Confidence 999999999998888899999999999999999999999999999999999999999999999986 6679999999
Q ss_pred CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC
Q 001352 565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 644 (1093)
Q Consensus 565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 644 (1093)
+++.+..+..+. ....+.+++|+|++.++++|+.|+.|++||+.+++.+..+..| ...|.+++|+|+|++|++++.|
T Consensus 271 ~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h--~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 271 ADREVAIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH--ENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp TTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSCEEEEETT
T ss_pred CCcEEEEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC--CCcEEEEEECCCCCEEEEEcCC
Confidence 988777665433 2246899999999999999999999999999999998888765 4569999999999999999999
Q ss_pred CeEEEEE
Q 001352 645 NRIKILE 651 (1093)
Q Consensus 645 g~i~iw~ 651 (1093)
++|++|+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999995
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5e-39 Score=350.96 Aligned_cols=290 Identities=18% Similarity=0.309 Sum_probs=255.1
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
++|.+|++.|++++|||||+ +|++|+.||+|+|||+.++..+.. +.+|..+|.+++|+|+
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~~~ 66 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFIAR 66 (304)
T ss_dssp EEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGG
T ss_pred EeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEeCC
Confidence 46889999999999999998 589999999999999999987765 6679999999999999
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-ceeEEeecCCC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGA 487 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~h~~ 487 (1093)
+++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|++|++||+.++ .....+.+|..
T Consensus 67 ~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~ 141 (304)
T 2ynn_A 67 KNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEH 141 (304)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred CCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence 9999999999999999999987554 6789999999999999999 8999999999999999988 45577899999
Q ss_pred CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEcc--CCCEEEEEecCCCCceeEEEEeCC
Q 001352 488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNES 564 (1093)
Q Consensus 488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~ 564 (1093)
.|.+++|+|. ++.+|++|+.||+|++||+........+. .+...+..+.|+| ++.+|++++. ++.|++||+.
T Consensus 142 ~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~~ 216 (304)
T 2ynn_A 142 FVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQ 216 (304)
T ss_dssp CEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEETT
T ss_pred cEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeCC
Confidence 9999999764 45799999999999999998877666554 4556888899987 7789999986 7789999999
Q ss_pred CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC--EEEEEE
Q 001352 565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIA 642 (1093)
Q Consensus 565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~ 642 (1093)
+++++..+.+|. ..|.+++|+|++++|++|+.||+|++||..+++....+..+. ..+.+++|+|++. ++++++
T Consensus 217 ~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 217 TKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp TTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEEEEE
T ss_pred CCccceeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEEEec
Confidence 999999999988 899999999999999999999999999999999999987653 4588999999875 577776
Q ss_pred CCCeEEEEEcCC
Q 001352 643 NENRIKILETPE 654 (1093)
Q Consensus 643 ~dg~i~iw~~~~ 654 (1093)
.+ .+.+|++..
T Consensus 292 ~~-g~~~~~~~~ 302 (304)
T 2ynn_A 292 DN-GFTVLSLGN 302 (304)
T ss_dssp TT-EEEEEECC-
T ss_pred CC-ceEEEEecc
Confidence 65 567777653
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-38 Score=350.27 Aligned_cols=298 Identities=19% Similarity=0.240 Sum_probs=256.8
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
.+|.||++.|++++|+|++..+|++|+.|++|++||+.+....... ....+.+|...|.+++|+|+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~s~d 76 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTLTAD 76 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEECTT
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEECCC
Confidence 4688999999999999977447999999999999998754322111 11227789999999999999
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 488 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~ 488 (1093)
|++|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||+. ++++..+.+|...
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~ 150 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHNDW 150 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSSC
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCCc
Confidence 9999999999999999999987554 6789999999999999999 89999999999999975 6778889999999
Q ss_pred eEEeeecccC----CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352 489 VYSLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 564 (1093)
Q Consensus 489 v~~~~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 564 (1093)
|.++++.+.. ++..+++++.|+.|++||+........+..|...|.+++|+|+|++|++++. ++.|++||+.
T Consensus 151 v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~ 226 (319)
T 3frx_A 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLA 226 (319)
T ss_dssp EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECC
Confidence 9999997643 4568999999999999999998888889999999999999999999999986 7789999999
Q ss_pred CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC------CCCCCceEEEecCCCEE
Q 001352 565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNGTLL 638 (1093)
Q Consensus 565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~~~l 638 (1093)
+++.+..+..+ ..+.+++|+|++.++++++.+ .+++|++..+..+..+..+. +...+.+++|+|+|++|
T Consensus 227 ~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 301 (319)
T 3frx_A 227 AKKAMYTLSAQ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301 (319)
T ss_dssp TTEEEEEEECC----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEE
T ss_pred CCcEEEEecCC----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEE
Confidence 99998888764 479999999999988887755 59999999888777765321 12457799999999999
Q ss_pred EEEECCCeEEEEEcCCC
Q 001352 639 AVIANENRIKILETPES 655 (1093)
Q Consensus 639 ~~~~~dg~i~iw~~~~~ 655 (1093)
++++.||.|++|++.+.
T Consensus 302 ~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 302 FAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEETTSCEEEEEEEEC
T ss_pred EEeecCceEEEEEEeec
Confidence 99999999999998653
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.1e-39 Score=364.88 Aligned_cols=303 Identities=17% Similarity=0.258 Sum_probs=263.0
Q ss_pred HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
.++|.||++.|++++|+|+|++ |++|+.||+|+|||+.+++.+.. +.+|...|.+++|+|
T Consensus 59 ~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~~s~ 118 (380)
T 3iz6_a 59 CRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECAFAP 118 (380)
T ss_dssp EEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCEECT
T ss_pred eecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEEECC
Confidence 4678899999999999999985 99999999999999999987765 667999999999999
Q ss_pred CCCEEEEEEcCCEEEEEEccCCCc----ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-
Q 001352 408 DGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF- 482 (1093)
Q Consensus 408 dg~~las~~~d~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~- 482 (1093)
+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+..+
T Consensus 119 ~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~ 197 (380)
T 3iz6_a 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISIFG 197 (380)
T ss_dssp TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEEEC
T ss_pred CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEEee
Confidence 999999999999999999976421 1222357799999999999998654 6999999999999999999998887
Q ss_pred ----ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352 483 ----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 557 (1093)
Q Consensus 483 ----~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 557 (1093)
.+|...|.++++++. ++.++++|+.||.|++||++. ......+.+|...|.+++|+|++++|++++. ++.
T Consensus 198 ~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~ 272 (380)
T 3iz6_a 198 SEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----DGT 272 (380)
T ss_dssp CCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----SSC
T ss_pred cccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----CCe
Confidence 679999999998643 567999999999999999984 4667788899999999999999999999986 667
Q ss_pred EEEEeCCCCeeeeeeecccc----cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec--CCCCCCCceEEE
Q 001352 558 LVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPRICF 631 (1093)
Q Consensus 558 i~iwd~~~~~~~~~~~~~~~----~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~v~~ 631 (1093)
|++||+.+++.+..+..+.. +...+.+++|+|+++++++|+.||.|++||..+++.+..+.. ..+...|.+++|
T Consensus 273 i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp EEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred EEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence 99999999999888766531 113489999999999999999999999999999998877732 234567999999
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCc
Q 001352 632 NKNGTLLAVIANENRIKILETPESN 656 (1093)
Q Consensus 632 s~~~~~l~~~~~dg~i~iw~~~~~~ 656 (1093)
+|+|++|++|+.|++|++|++...+
T Consensus 353 s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 353 SSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCCEEEEeeCCCCEEEEecCCCc
Confidence 9999999999999999999987653
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-38 Score=362.04 Aligned_cols=286 Identities=18% Similarity=0.287 Sum_probs=266.4
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.+|..+|++++|+|++.+|++|+.|++|+|||+.+++..+ .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 56899999999999999999999999999999999987655 7889999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
+.+++++.++.+|...|.+++|+| ++.+|++++.|++|++||+.++.....+..|...+.++.++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 999999999999999999999965 5679999999999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC--------------------CCEEEEEeCCCcEEEEECCCCc
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ 612 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~ 612 (1093)
++.|++||+.+++....+.+|. ..|.+++|+|+ +.++++|+.|++|++||+.+++
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6679999999999999998887 89999999996 6789999999999999999999
Q ss_pred eEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEec
Q 001352 613 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 692 (1093)
Q Consensus 613 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1093)
++..+..|. ..|.+++|+|+|++|++++.|+.|++||..+++.+..+.+|...|.+++|+
T Consensus 330 ~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------ 389 (410)
T 1vyh_C 330 CLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH------------------ 389 (410)
T ss_dssp EEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC------------------
T ss_pred eEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc------------------
Confidence 999888664 468999999999999999999999999999999999999999999999996
Q ss_pred CCCCCCCccceeecccccceecce
Q 001352 693 EDPKEDVKPEISVEAENKSEVEKP 716 (1093)
Q Consensus 693 ~~~s~d~~~l~s~~~d~~i~~w~~ 716 (1093)
|++.++++++.|++|++|+.
T Consensus 390 ----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 ----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----SSSSCEEEEETTSEEEEEC-
T ss_pred ----CCCCEEEEEeCCCcEEEEeC
Confidence 77888999999999999985
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.9e-38 Score=347.58 Aligned_cols=286 Identities=14% Similarity=0.182 Sum_probs=262.6
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.+|.+.|.+++|+||+++|++|+.|++|++||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++||
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence 77899999999999999999999999999999999886554 6778999999999999999 899999999999999
Q ss_pred CCCC----ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352 473 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 548 (1093)
Q Consensus 473 ~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 548 (1093)
+.++ +....+.+|...|.++.|.+. + .+++++.|+.|++||+.++.....+..|...|.+++|+|++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 9876 355678899999999999653 2 59999999999999999999999999999999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352 549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 628 (1093)
Q Consensus 549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 628 (1093)
+. ++.|++||+.++..+..+.+|. ..|.+++|+|+++++++|+.||+|++||+.+++.+..+........|.+
T Consensus 203 ~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp ET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred eC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 86 6679999999999999999888 8999999999999999999999999999999988888765554456899
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352 629 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 708 (1093)
Q Consensus 629 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 708 (1093)
++|+|+|+++++++.|+.|++||..+...+..+.+|...|.+++|+ |++.++++++.|
T Consensus 276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~s~s~D 333 (340)
T 1got_B 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD 333 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc----------------------CCCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999999986 788999999999
Q ss_pred ccceecc
Q 001352 709 NKSEVEK 715 (1093)
Q Consensus 709 ~~i~~w~ 715 (1093)
++|++|+
T Consensus 334 ~~i~iWd 340 (340)
T 1got_B 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred ccEEecC
Confidence 9999996
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=6.7e-39 Score=357.98 Aligned_cols=320 Identities=16% Similarity=0.205 Sum_probs=230.4
Q ss_pred ceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCC
Q 001352 702 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 781 (1093)
Q Consensus 702 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 781 (1093)
++.++.+.....|++....+ ..|...|.+++|+|||++|++++.+. +++||- .+
T Consensus 19 ~~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~---------------~v 72 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG---------------SI 72 (357)
T ss_dssp -------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------EE
T ss_pred EEecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------eE
Confidence 34445567778888653222 23888999999999999999998742 233331 23
Q ss_pred cccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEE----EECCCCCCeEEEEEcCCCC
Q 001352 782 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPHDN 857 (1093)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~d~ 857 (1093)
++|+..++...........+|...|.+++|+|++++++++.||+|+|||+.+++... ...+|...|++++|+| ++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg 151 (357)
T 4g56_B 73 WVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DG 151 (357)
T ss_dssp EEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SS
T ss_pred EEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CC
Confidence 334444333222222222247889999999999998887778999999999876543 3457999999999999 99
Q ss_pred CEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccC
Q 001352 858 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 936 (1093)
Q Consensus 858 ~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 936 (1093)
++|++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++. ++++++.|++|++||+.+++.... + ....+.
T Consensus 152 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~--~-~~~~~~-- 226 (357)
T 4g56_B 152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR--I-DFCASD-- 226 (357)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB--C-CCTTCC--
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee--e-eecccc--
Confidence 9999999999999999999999999999999999999999885 789999999999999988653321 1 111222
Q ss_pred CCCceEEEEccCC-CEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCce
Q 001352 937 APSETHIQFHKDQ-TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEV 1013 (1093)
Q Consensus 937 ~~~v~~~~~s~dg-~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg-~~l~t~~~dg~v~vwd~~~~~~ 1013 (1093)
..+.+++|+|++ .+|++ +.|+.|++||+.+++++.. +.+|...|.+++|+|++ ++|++++.||+|+|||+.++++
T Consensus 227 -~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 227 -TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp -SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred -ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 368999999985 56777 5789999999999998877 56899999999999997 5799999999999999999987
Q ss_pred EEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCC
Q 001352 1014 QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1066 (1093)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~ 1066 (1093)
+..+. |...|. +++|+|.|+.+|++++.||+|++|+++..+.
T Consensus 305 ~~~~~---------H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 305 FRDLS---------HRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEECC---------CSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred eEECC---------CCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 75432 455565 6789997789999999999999999976554
No 23
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.1e-38 Score=344.47 Aligned_cols=288 Identities=16% Similarity=0.244 Sum_probs=263.2
Q ss_pred ecCCCCCeEEEEECCC----CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcE
Q 001352 393 VRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 468 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~d----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 468 (1093)
+.+|.+.|.+++|+|+ +++|++|+.|++|+|||+.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5689999999999985 67999999999999999987643 22336889999999999999999 89999999999
Q ss_pred EEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352 469 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 548 (1093)
Q Consensus 469 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 548 (1093)
++||+.+++.+..+..|...+.+++|+| ++.+|++++.||.|++|++++......+..+...+.+++|+|++++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999999999999999999999999954 67899999999999999999999988888898999999999999999999
Q ss_pred ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352 549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 628 (1093)
Q Consensus 549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 628 (1093)
+. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++++.||.|++||+.+++....+..+ ...|.+
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~ 253 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLN 253 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC--SSCEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC--CCceEE
Confidence 86 6679999999999999999887 89999999999999999999999999999999998888765 446999
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352 629 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 708 (1093)
Q Consensus 629 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 708 (1093)
++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+ |+++++++++.|
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s----------------------~~g~~l~s~~~d 311 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN----------------------GNGSKIVSVGDD 311 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETT
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEEC----------------------CCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999986 788899999999
Q ss_pred ccceecce
Q 001352 709 NKSEVEKP 716 (1093)
Q Consensus 709 ~~i~~w~~ 716 (1093)
++|++||.
T Consensus 312 ~~i~vwd~ 319 (321)
T 3ow8_A 312 QEIHIYDC 319 (321)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEeC
Confidence 99999995
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.4e-38 Score=347.52 Aligned_cols=304 Identities=15% Similarity=0.228 Sum_probs=247.8
Q ss_pred HHhhccCCC-CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 328 AQTLIEGSS-SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 328 ~~~l~~h~~-~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
+++|.+|.+ .|++++|+|||+ +||+|+.|++|+|||+.++...... ....+|...|.+++|+
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~~----------------~~~~~h~~~v~~~~~s 70 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKS----------------VLSEGHQRTVRKVAWS 70 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEEE----------------EECSSCSSCEEEEEEC
T ss_pred eeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceeee----------------eeccccCCcEEEEEEC
Confidence 356788988 999999999999 5999999999999999887644321 1146899999999999
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc---eeEEee
Q 001352 407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFE 483 (1093)
Q Consensus 407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~---~~~~~~ 483 (1093)
|+|++||+|+.|++|++||+.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++. ++..+.
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~~ 147 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVLN 147 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEEC
T ss_pred CCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEec
Confidence 9999999999999999999987642 23446889999999999999999 89999999999999998764 466788
Q ss_pred cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001352 484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 561 (1093)
Q Consensus 484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw 561 (1093)
+|...|.+++|+| ++.+|++++.|+.|++||...... ...+..|...|.+++|+|+|++|++++. ++.|++|
T Consensus 148 ~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~iW 221 (345)
T 3fm0_A 148 SHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVRIW 221 (345)
T ss_dssp CCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEE
T ss_pred CcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEEEe
Confidence 9999999999965 567999999999999999987653 4577889999999999999999999986 6679999
Q ss_pred eCCCC---------------eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----EEE---Eec
Q 001352 562 NESEG---------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL----LTT---IDA 619 (1093)
Q Consensus 562 d~~~~---------------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~---~~~ 619 (1093)
+.... .++..+.+. |...|.+++|+|++..+++++.|+.|++|+...+.. ... ...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~ 299 (345)
T 3fm0_A 222 RQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLH 299 (345)
T ss_dssp EEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEET
T ss_pred ccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeec
Confidence 96322 223334431 247899999999999999999999999999876431 111 112
Q ss_pred CCCCCCCceEEEecCC-CEEEEEECCCeEEEEEcCCCceee
Q 001352 620 GGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD 659 (1093)
Q Consensus 620 ~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 659 (1093)
..+...|.+++|+|++ .+|++++.||+|++|+..+.+...
T Consensus 300 ~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 300 QAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp TSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred ccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 2445679999999987 599999999999999998776543
No 25
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5.3e-37 Score=337.15 Aligned_cols=292 Identities=18% Similarity=0.311 Sum_probs=258.7
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
.+|.+|.+.|++++|+|+|+ +|++|+.||.|++||+.+++.... +.+|...|.+++|+|+
T Consensus 17 ~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 76 (312)
T 4ery_A 17 FTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVAWSSD 76 (312)
T ss_dssp EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTT
T ss_pred EEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEEEcCC
Confidence 46789999999999999998 589999999999999999887654 6789999999999999
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 488 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~ 488 (1093)
+++|++++.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++||+.+++.+..+..|..+
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 151 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDP 151 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred CCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCc
Confidence 9999999999999999999987554 6789999999999999999 8999999999999999999999999999999
Q ss_pred eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352 489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 567 (1093)
Q Consensus 489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 567 (1093)
|.+++|++ ++.++++++.||.|++||+.+.+....+. .+...+..++|+|+++++++++. ++.|++||+.+++
T Consensus 152 v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~ 225 (312)
T 4ery_A 152 VSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGK 225 (312)
T ss_dssp EEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTTE
T ss_pred EEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCc
Confidence 99999965 66799999999999999999888776654 45567999999999999999986 6679999999999
Q ss_pred eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE--CCC
Q 001352 568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--NEN 645 (1093)
Q Consensus 568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~dg 645 (1093)
.+..+.+|......+......+++.++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+++++++++ .|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~~~d~ 303 (312)
T 4ery_A 226 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAALENDK 303 (312)
T ss_dssp EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEECTTTC
T ss_pred EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEccCCc
Confidence 999998877333334444455778899999999999999999999999887664 4689999999999999997 699
Q ss_pred eEEEEEcC
Q 001352 646 RIKILETP 653 (1093)
Q Consensus 646 ~i~iw~~~ 653 (1093)
.|++|+..
T Consensus 304 ~i~~W~~d 311 (312)
T 4ery_A 304 TIKLWKSD 311 (312)
T ss_dssp CEEEEECC
T ss_pred cEEEecCC
Confidence 99999864
No 26
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=344.30 Aligned_cols=298 Identities=13% Similarity=0.121 Sum_probs=239.0
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccc-eeeeeeecCCCCCeEEEEECCCCCE
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSM-LFKTALVRDPGVSVNRVVWSPDGSL 411 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~v~~s~dg~~ 411 (1093)
.|...|.+++|||||+ +|++++ |+++++||... .+|+...... .-.......|...|.+++|+||+ +
T Consensus 28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred cccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 4667899999999998 577776 78899998421 1111100000 00000122367789999999985 6
Q ss_pred EEEEEcCCEEEEEEccCCCcccce-EEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352 412 LGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 490 (1093)
Q Consensus 412 las~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~ 490 (1093)
|++|+.||+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+.+++++..+.+|...|+
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 889999999999999998865533 23568999999999999999 899999999999999999999999999999999
Q ss_pred EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC--CCCceEEEEEccC-CCEEEEEecCCCCceeEEEEeCCCCe
Q 001352 491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGA 567 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~~ 567 (1093)
+++|++... .++++++.||+|++||+++.+....+.. +...+.+++|+|+ ++++++++. ++.|++||+++++
T Consensus 174 ~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 174 CVAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTS 248 (344)
T ss_dssp EEEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--
T ss_pred EEEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCc
Confidence 999976432 5889999999999999999888776643 4557899999995 567777765 6789999999999
Q ss_pred eeeeeecccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC-EEEEEECCC
Q 001352 568 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANEN 645 (1093)
Q Consensus 568 ~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg 645 (1093)
++..+.+|. ..|.+++|+|++ ++|++|+.|++|+|||+.++++.. +. ++...|.+++|+|+++ +|++++.|+
T Consensus 249 ~~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 249 CVLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp CCEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred EEEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence 999999988 899999999998 578899999999999999988654 33 3455799999999886 677899999
Q ss_pred eEEEEEcCCC
Q 001352 646 RIKILETPES 655 (1093)
Q Consensus 646 ~i~iw~~~~~ 655 (1093)
+|++|++.+.
T Consensus 323 ~v~~w~v~~~ 332 (344)
T 4gqb_B 323 QVVHHVVPTE 332 (344)
T ss_dssp CEEEEECCC-
T ss_pred eEEEEECCCC
Confidence 9999999865
No 27
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.6e-38 Score=352.04 Aligned_cols=294 Identities=13% Similarity=0.148 Sum_probs=238.6
Q ss_pred ccCCCCceeeeecCCCceEEEEEcc------CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352 332 IEGSSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 405 (1093)
Q Consensus 332 ~~h~~~V~~~~~spdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 405 (1093)
..|.+.|++++|||||+ +||+|+. |+.|++|+..++........ ...+|...|.+++|
T Consensus 39 ~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~~ 102 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVAW 102 (357)
T ss_dssp -CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEEE
T ss_pred ccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEEE
Confidence 47999999999999998 5888887 67889998887764422110 13468899999999
Q ss_pred CCCCCEEEEEEcCCEEEEEEccCCCcccc-eEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352 406 SPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 484 (1093)
Q Consensus 406 s~dg~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 484 (1093)
+|++++| +++.||+|+|||+.+++.... .....+|...|++++|+|+++ +|++|+.|++|++||+.+++++..+.+
T Consensus 103 s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 103 VSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp ETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred cCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 9998655 577899999999998875432 224568999999999999999 899999999999999999999999999
Q ss_pred CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe--cCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEE
Q 001352 485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEW 561 (1093)
Q Consensus 485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iw 561 (1093)
|...|++++|++..+ .++++++.||.|++||+++.+....+ ..+...+.+++|+|++ .++++++. ++.|++|
T Consensus 180 h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~w 254 (357)
T 4g56_B 180 HSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLV 254 (357)
T ss_dssp CSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEE
T ss_pred CCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEE
Confidence 999999999976543 47899999999999999988766544 3455679999999985 56777765 6679999
Q ss_pred eCCCCeeeeeeecccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-CCCEEE
Q 001352 562 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLA 639 (1093)
Q Consensus 562 d~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~ 639 (1093)
|+.+++.++.+.+|. ..|.+++|+|++ ++|++|+.|++|+|||+++++.+..+. +...|++++|+| ++.+|+
T Consensus 255 d~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~---H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 255 NIKNPDSAQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS---HRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp ESSCGGGCEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC---CSSCEEEEEECSSSTTEEE
T ss_pred ECCCCcEeEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC---CCCCEEEEEEeCCCCCEEE
Confidence 999999999999887 899999999987 578899999999999999998877653 345699999998 899999
Q ss_pred EEECCCeEEEEEcCCC
Q 001352 640 VIANENRIKILETPES 655 (1093)
Q Consensus 640 ~~~~dg~i~iw~~~~~ 655 (1093)
+++.||+|++|++...
T Consensus 329 s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 329 TVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEETTSCEEEEECC--
T ss_pred EEcCCCeEEEEECCCC
Confidence 9999999999999754
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.5e-38 Score=345.20 Aligned_cols=296 Identities=13% Similarity=0.159 Sum_probs=226.8
Q ss_pred cccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352 734 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 813 (1093)
Q Consensus 734 ~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 813 (1093)
+...|.+++|+|||+++++++ |+++++|+.... +|+................+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 556799999999999776655 778888874321 1111000000000000002567899999999
Q ss_pred CCCEEEEEeCCeEEEEEccCceeEEE----ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCC
Q 001352 814 NDAYLFSASGGVISLYIVMTFKTILT----IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 889 (1093)
Q Consensus 814 dg~~la~~~dg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~ 889 (1093)
|+.+++.+.||+|+|||+.+++.+.. +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 97655444489999999998876543 448999999999999 9999999999999999999999999999999999
Q ss_pred eEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC-CCEEEE-EeCCeEEEEEcC
Q 001352 890 VTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAE 966 (1093)
Q Consensus 890 V~~l~~s~dg~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~l~~-~~d~~i~vwd~~ 966 (1093)
|++++|+|++. +|++++.|++|++||+.+++.... +.. ..+. ..+.+++|+|+ +++|++ +.|++|++||+.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 99999999984 789999999999999998663321 111 1111 25889999995 466777 578999999999
Q ss_pred CcceeeeeecCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCC
Q 001352 967 ELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1045 (1093)
Q Consensus 967 ~~~~~~~~~~~h~~~v~~~~fs~dg-~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1045 (1093)
+++++.. +.+|...|.+++|+||| ++|++|+.||+|+|||+.++++.. +. .|.+.|. +++|+|++..
T Consensus 246 ~~~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--------~H~~~V~--~v~~sp~~~~ 313 (344)
T 4gqb_B 246 STSCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--------AHRDFVR--DATWSPLNHS 313 (344)
T ss_dssp C--CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--------CCSSCEE--EEEECSSSTT
T ss_pred CCcEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--------CCCCCEE--EEEEeCCCCe
Confidence 9999887 56899999999999998 579999999999999999987653 22 2456666 6789996556
Q ss_pred EEEEEeCCCcEEEEecCCC
Q 001352 1046 QFAVGLTNGEVYVIEPNEP 1064 (1093)
Q Consensus 1046 ~l~~~~~dg~v~~w~~~~~ 1064 (1093)
+|++++.||+|++|+++..
T Consensus 314 llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEEETTSCEEEEECCC-
T ss_pred EEEEEcCCCeEEEEECCCC
Confidence 7889999999999999653
No 29
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-36 Score=339.09 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=260.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.+|...|.+++|+||+++||+|+.|++|+|||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 77899999999999999999999999999999998876544 5678999999999999999 899999999999999
Q ss_pred CCCC------ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc--CCCE
Q 001352 473 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR 544 (1093)
Q Consensus 473 ~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~--d~~~ 544 (1093)
+... .....+.+|...|.+++|++ ++..|++++.||+|++||+++++....+..|...|.+++++| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8654 34567788999999999965 557999999999999999999999999999999999999987 5789
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCC
Q 001352 545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 624 (1093)
Q Consensus 545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 624 (1093)
+++++. ++.|++||+++++.+..+.+|. ..|.+++|+|+++++++++.|++|++||+.+++.+..+..+....
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 999986 6679999999999999998887 899999999999999999999999999999998887776555445
Q ss_pred CCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCcccee
Q 001352 625 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 704 (1093)
Q Consensus 625 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 704 (1093)
.+.+++|+|+++++++++.|+.|++||+.++..+..+.+|...|.+++|+ |+++++++
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s----------------------pdg~~l~s 343 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----------------------PDGTAFCS 343 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC----------------------TTSSCEEE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC----------------------CCCCEEEE
Confidence 67899999999999999999999999999999999999999999999996 78999999
Q ss_pred ecccccceecc
Q 001352 705 VEAENKSEVEK 715 (1093)
Q Consensus 705 ~~~d~~i~~w~ 715 (1093)
++.|+++++|+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999996
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-36 Score=351.47 Aligned_cols=327 Identities=16% Similarity=0.227 Sum_probs=268.1
Q ss_pred CCCCCeEEEEECCCCC-EEEEEEcCCEEEEEEc----cCCCccc---ceEEecc----------ccccEEEEEeeCCCCc
Q 001352 395 DPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAY----HGGSDAR---QQLEIDA----------HVGNVNDLAFSAPCKQ 456 (1093)
Q Consensus 395 ~h~~~V~~v~~s~dg~-~las~~~d~~i~iwd~----~~~~~~~---~~~~~~~----------h~~~v~~~~~s~d~~~ 456 (1093)
.|.+.|.+++|+|+|+ +||+|+.|+.|++||+ .+++.+. ....+.. |.+.|++++|+|+++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~- 121 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN- 121 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS-
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC-
Confidence 4779999999999999 9999999999999999 8876200 1112222 688999999999999
Q ss_pred EEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCc----
Q 001352 457 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG---- 532 (1093)
Q Consensus 457 l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~---- 532 (1093)
+|++++.||.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++||+.+......+..+...
T Consensus 122 -~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 122 -SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp -EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred -EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 899999999999999 88899999999999999999965 6679999999999999999998888888777666
Q ss_pred -----------eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC
Q 001352 533 -----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 601 (1093)
Q Consensus 533 -----------v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg 601 (1093)
+.+++|+|++. +++++. ++.|++||+.+++.+..+..|. ..|.+++|+|+++++++++.||
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~ 269 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHH---GPISVLEFNDTNKLLLSASDDG 269 (425)
T ss_dssp --------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCS---SCEEEEEEETTTTEEEEEETTS
T ss_pred eeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCC---CceEEEEECCCCCEEEEEcCCC
Confidence 89999999866 555554 6679999999988888877766 7788888888888888888888
Q ss_pred cEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceee
Q 001352 602 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 681 (1093)
Q Consensus 602 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 681 (1093)
.|++||+.+++.+..+.
T Consensus 270 ~i~i~d~~~~~~~~~~~--------------------------------------------------------------- 286 (425)
T 1r5m_A 270 TLRIWHGGNGNSQNCFY--------------------------------------------------------------- 286 (425)
T ss_dssp CEEEECSSSBSCSEEEC---------------------------------------------------------------
T ss_pred EEEEEECCCCccceEec---------------------------------------------------------------
Confidence 88888766542111110
Q ss_pred eeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEE
Q 001352 682 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 761 (1093)
Q Consensus 682 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~v 761 (1093)
T Consensus 287 -------------------------------------------------------------------------------- 286 (425)
T 1r5m_A 287 -------------------------------------------------------------------------------- 286 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEE
Q 001352 762 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI 840 (1093)
Q Consensus 762 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~ 840 (1093)
+|...+.+++|+|++ ++++++ ++.|++||+.+++.+..+
T Consensus 287 ---------------------------------------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~ 326 (425)
T 1r5m_A 287 ---------------------------------------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS 326 (425)
T ss_dssp ---------------------------------------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ---------------------------------------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEec
Confidence 144556677777777 666665 688888888888888888
Q ss_pred CCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc--------------------eeeecccccC--CeEEEEEeCC
Q 001352 841 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------VISKLEGHSK--RVTGLVFSDA 898 (1093)
Q Consensus 841 ~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~d 898 (1093)
..|...+.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|+
T Consensus 327 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 405 (425)
T 1r5m_A 327 IVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA 405 (425)
T ss_dssp ECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT
T ss_pred ccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC
Confidence 88999999999999 89999999999999999999988 8899999976 9999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCC
Q 001352 899 LNILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 899 g~~l~s~s~dg~i~iwd~~~ 918 (1093)
+++|++++.||.|++|++.+
T Consensus 406 ~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 406 GNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp SSEEEEEESSSCCEEEECCC
T ss_pred CceEEEEecCceEEEEeecC
Confidence 99999999999999999863
No 31
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-37 Score=353.44 Aligned_cols=340 Identities=13% Similarity=0.176 Sum_probs=281.0
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEec----CCCceeEEeeeeeeecccccceee-eeeecCCCCCeEEEEECC
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV----NSGQKLFIRNFKVWDIGACSMLFK-TALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~v~~s~ 407 (1093)
.|.+.|++++|+|+|+.+||+|+.||.|++||+ .+++.+...... ..+ ..++. .....+|...|.+++|+|
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTII-AEL---RHPFALSASSGKTTNQVTCLAWSH 118 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEE-EEE---ECCCCCC------CBCEEEEEECT
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccc-ccc---cccccccccccCCCCceEEEEEcC
Confidence 466899999999999834899999999999999 888732110000 000 00000 001223788999999999
Q ss_pred CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352 408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 487 (1093)
Q Consensus 408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~ 487 (1093)
++++|++++.|+.|++|| .+++.+ ..+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+..+..
T Consensus 119 ~~~~l~~~~~dg~i~i~~-~~~~~~---~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWN-KTGALL---NVLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp TSSEEEEEETTSCEEEEE-TTSCEE---EEECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred CCCEEEEEeCCCeEEEEe-CCCCee---eeccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence 999999999999999999 444433 36788999999999999999 899999999999999999999999988877
Q ss_pred C---------------eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 488 P---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 488 ~---------------v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
. +.+++|++. ..+++++.+|.|++||+........+..+...+.+++|+|+++++++++.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 267 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-- 267 (425)
T ss_dssp -------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET--
T ss_pred CccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC--
Confidence 7 888888754 36999999999999999999888889899999999999999999999986
Q ss_pred CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
++.|++||+.+++.+..+.+|. ..+.+++|+|++ .+++++.||.|++||+.+++.+..+..+. ..+.+++|+
T Consensus 268 --d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~s 339 (425)
T 1r5m_A 268 --DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG--VPIFAGRIS 339 (425)
T ss_dssp --TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT--CCEEEEEEC
T ss_pred --CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC--ccEEEEEEc
Confidence 6679999999999999988877 899999999999 99999999999999999999998888654 468999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCc--------------------eeeecccccc--cceeeeecCCCceeeeeccCCceE
Q 001352 633 KNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVS 690 (1093)
Q Consensus 633 ~~~~~l~~~~~dg~i~iw~~~~~~--------------------~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~ 690 (1093)
|++++|++++.||.|++|++.+.. .+..+..+.. .+.+++|+
T Consensus 340 ~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---------------- 403 (425)
T 1r5m_A 340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN---------------- 403 (425)
T ss_dssp TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC----------------
T ss_pred CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc----------------
Confidence 999999999999999999998877 7777888766 88888886
Q ss_pred ecCCCCCCCccceeecccccceeccee
Q 001352 691 VNEDPKEDVKPEISVEAENKSEVEKPL 717 (1093)
Q Consensus 691 ~~~~~s~d~~~l~s~~~d~~i~~w~~~ 717 (1093)
|+++++++++.|+.+++|++.
T Consensus 404 ------~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 404 ------CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ------TTSSEEEEEESSSCCEEEECC
T ss_pred ------CCCceEEEEecCceEEEEeec
Confidence 788899999999999999964
No 32
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=2.6e-35 Score=377.40 Aligned_cols=523 Identities=13% Similarity=0.059 Sum_probs=378.0
Q ss_pred CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 413 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la 413 (1093)
+.+.+.+++|||+ + ||..+. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4568999999974 4 455443 789999999887543 667999999999999999999
Q ss_pred EEEcC------CEEEEEEccCCCcccceEEeccccccE-------EEEEeeCCCCcEEEEEEcCC------CcEEEEECC
Q 001352 414 VAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDD------KTIKVWDAV 474 (1093)
Q Consensus 414 s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v-------~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~ 474 (1093)
+++.+ ..|++||+.+++. ..+..|...+ ..++|+|||+ ++++++.+ ..|.+||+.
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88654 3799999988752 2577888888 9999999998 67777754 458888887
Q ss_pred CCceeEEeecCCCCeEEeeecccCCccEEEEEec------------CCeEEEEEcCCCCceEEecCCCCceEEEEEccCC
Q 001352 475 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV------------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 542 (1093)
Q Consensus 475 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~ 542 (1093)
+++... +..+. ...++|++ | ++++++. +...++|..........+..+...+.++.|+++
T Consensus 143 ~g~~~~-l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d- 214 (1045)
T 1k32_A 143 GINFVP-LNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH- 214 (1045)
T ss_dssp GTEEEE-CCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred CCCeEE-ecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence 776543 33332 33556754 5 7777753 345667754444555566788889999999988
Q ss_pred CEEEEEecCCCCceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC
Q 001352 543 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 621 (1093)
Q Consensus 543 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 621 (1093)
..++++.. ++.+.+|.+.. +.....+..+. .+...+|+|+|++++.+. ++.|++||+...+. ..+..+.
T Consensus 215 ~l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l-~~l~~~~ 284 (1045)
T 1k32_A 215 RIYFITDI----DGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKI-EKIEIGD 284 (1045)
T ss_dssp EEEEEECT----TSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCE-EECCCCC
T ss_pred EEEEEEec----cCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEecCCceEe-eeeccCc
Confidence 44444432 33455665432 33344444443 356679999999988874 89999999954443 3443321
Q ss_pred ---------CCCCCceEEEe-cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEe
Q 001352 622 ---------GLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 691 (1093)
Q Consensus 622 ---------~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 691 (1093)
+...+..++|+ |||+++++++ ++.+.+|+...+.... +.
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~----------------------------- 333 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP----------------------------- 333 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----------------------------
T ss_pred ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----------------------------
Confidence 11247899999 9999999888 7889999877543221 10
Q ss_pred cCCCCCCCccceeecccccceecceeeccCccccccccCcccccc-ceEEEEeecCCceEEEeeccceeE-EeeecCccc
Q 001352 692 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALASNGVHL-MWRWPRNDL 769 (1093)
Q Consensus 692 ~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~~~~~dg~v~-vw~~~~~~~ 769 (1093)
.+.. .+..++|+ +|+.++.++.++.+. +|++..
T Consensus 334 -----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~--- 368 (1045)
T 1k32_A 334 -----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT--- 368 (1045)
T ss_dssp -----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT---
T ss_pred -----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC---
Confidence 0223 57788899 999888888776666 666432
Q ss_pred CcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeE
Q 001352 770 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT 848 (1093)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~ 848 (1093)
+. ... +. ++...+..++|||||++|++++ ++.|++||+.+++....+..|...+.
T Consensus 369 -------------------~~-~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~ 424 (1045)
T 1k32_A 369 -------------------GK-AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT 424 (1045)
T ss_dssp -------------------CC-EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred -------------------CC-ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence 22 111 11 2677899999999999999988 58999999999998888878889999
Q ss_pred EEEEcCCCCCEEEEEeCCC----------eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352 849 SLAFNPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 849 ~l~~s~~d~~~lasg~~dg----------~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 918 (1093)
+++||| |+++|++++.++ .|++||+.+++ +..+..|...+..++|+|||++|++++.++...+|+...
T Consensus 425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 999999 899998887654 99999999887 677888888899999999999999999988888887653
Q ss_pred Cceeee-----eeeec-----------------------CCCc-------ccCCCCceEEEEccCCCEEEE---------
Q 001352 919 WGIQTC-----RSLQT-----------------------PDGV-------MTLAPSETHIQFHKDQTRFLL--------- 954 (1093)
Q Consensus 919 ~~~~~~-----~~~~~-----------------------~~~~-------~~~~~~v~~~~~s~dg~~l~~--------- 954 (1093)
...... ..+.. ..+. ......+..++|+|||+++++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~ 582 (1045)
T 1k32_A 503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 582 (1045)
T ss_dssp SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence 321000 00000 0000 001135788999999987875
Q ss_pred ---E--eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001352 955 ---V--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1012 (1093)
Q Consensus 955 ---~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~ 1012 (1093)
+ ....+.+||+.+++.... . ..+.+++|||||++|++++.+ .|++||+.++.
T Consensus 583 ~~~~~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 583 YYQGAPEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp HHHCCCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cccccCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 1 234789999988875432 2 468899999999999998866 89999998887
No 33
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-36 Score=337.78 Aligned_cols=298 Identities=17% Similarity=0.288 Sum_probs=241.8
Q ss_pred HhhccCCCCceeeee-----cC-CCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEE
Q 001352 329 QTLIEGSSSPMSMDF-----HP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 402 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~-----sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 402 (1093)
.+|.||++.|++++| +| |++ +|++|+.|++|+|||+.+++.... .......+.+|...|.+
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~V~~ 81 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHFVSD 81 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSCEEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCceEE
Confidence 568899999999999 77 887 699999999999999986543210 00011237899999999
Q ss_pred EEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe
Q 001352 403 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 482 (1093)
Q Consensus 403 v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 482 (1093)
++|+|++.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+. +......
T Consensus 82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~-~~~~~~~ 155 (343)
T 2xzm_R 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNIL-GECKFSS 155 (343)
T ss_dssp EEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESS-SCEEEEC
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEecc-CCceeee
Confidence 9999999999999999999999999987554 6789999999999999999 89999999999999987 4444444
Q ss_pred e---cCCCCeEEeeecccCC--------ccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001352 483 E---GHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 551 (1093)
Q Consensus 483 ~---~h~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 551 (1093)
. +|...|.+++|++... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++++.
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~- 233 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK- 233 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC-
Confidence 3 7889999999976532 268999999999999994 44556678889999999999999999999986
Q ss_pred CCCceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--EEecC--------
Q 001352 552 KEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG-------- 620 (1093)
Q Consensus 552 ~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~-------- 620 (1093)
++.|++||+.+ ......+. +. ..|.+++|+|++.+++ ++.|+.|++||+.+++... .+...
T Consensus 234 ---dg~v~iwd~~~~~~~~~~~~-~~---~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 305 (343)
T 2xzm_R 234 ---DKKLLIWDILNLTYPQREFD-AG---STINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ 305 (343)
T ss_dssp ---TCEEEEEESSCCSSCSEEEE-CS---SCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTB
T ss_pred ---CCeEEEEECCCCcccceeec-CC---CcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhh
Confidence 77899999954 33444332 22 5699999999987765 4567889999998876544 33211
Q ss_pred -CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 621 -GGLPENPRICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 621 -~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
++...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 306 ~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred cCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 33456889999999999999999999999997643
No 34
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.3e-36 Score=329.92 Aligned_cols=268 Identities=19% Similarity=0.254 Sum_probs=241.2
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.+|.+.|.+++|+||+++|++++.||+|++||+.++..++ .+.+|..+|.+++|+|+++ +|++|+.|++|++||
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN 83 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence 77899999999999999999999999999999999986554 6778999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEcc-CCCEEEEEec
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCGT 550 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~-d~~~l~~~~~ 550 (1093)
+.+++++..+.+|...|.+++|+| ++.+|++++.||+|++||+++... ...+..|...|.+++|+| ++..+++++.
T Consensus 84 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred CCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 999999999999999999999965 567999999999999999987744 457788999999999999 6789999986
Q ss_pred CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352 551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 628 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 628 (1093)
++.|++||+.++.....+..+. ...+..+.|+| ++.++++++.|++|++||+.+++++..+..|. ..|.+
T Consensus 162 ----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~ 233 (304)
T 2ynn_A 162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF 233 (304)
T ss_dssp ----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred ----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEE
Confidence 7789999998887766665433 36788899986 67899999999999999999999999998764 46899
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecC
Q 001352 629 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNP 675 (1093)
Q Consensus 629 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~ 675 (1093)
++|+|++++|++++.||+|++||..+.+....+..+...+.++++.|
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 99999999999999999999999999999999999999999999874
No 35
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.1e-37 Score=348.46 Aligned_cols=290 Identities=15% Similarity=0.167 Sum_probs=255.8
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.+|.+.|.+++|+|++++|++|+.|++|+|||+.+++... .+.+|...|.+++|+|+|+ ++++|+.|+.|++||
T Consensus 62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN 136 (380)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence 78999999999999999999999999999999999886544 6789999999999999999 899999999999999
Q ss_pred CCCCc-------eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-----cCCCCceEEEEEcc
Q 001352 473 AVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA 540 (1093)
Q Consensus 473 ~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~~v~~~~~s~ 540 (1093)
+.+.. ....+.+|.+.|.++.|.+.. +..|++++.|++|++||+.++.....+ ..|...+.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 87542 345678999999999997653 357999999999999999998887766 56778899999977
Q ss_pred -CCCEEEEEecCCCCceeEEEEeCC-CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001352 541 -NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 618 (1093)
Q Consensus 541 -d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 618 (1093)
+++++++++. ++.|++||++ ++..+..+.+|. ..|.+++|+|++++|++|+.||+|++||+.+++.+..+.
T Consensus 216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCS---SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcC---CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 8899999986 6679999998 557788888887 899999999999999999999999999999999988876
Q ss_pred cCCC-----CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeec----ccccccceeeeecCCCceeeeeccCCce
Q 001352 619 AGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA----GVLSDNLRKLSVNPISTVTGAGIANGSV 689 (1093)
Q Consensus 619 ~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 689 (1093)
.+.. ...+.+++|+|+|+++++|+.||.|++||...++.+..+ .+|...|.+++|+
T Consensus 289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s--------------- 353 (380)
T 3iz6_a 289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS--------------- 353 (380)
T ss_dssp CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC---------------
T ss_pred ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC---------------
Confidence 5422 234889999999999999999999999999988777665 6788899999886
Q ss_pred EecCCCCCCCccceeecccccceeccee
Q 001352 690 SVNEDPKEDVKPEISVEAENKSEVEKPL 717 (1093)
Q Consensus 690 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 717 (1093)
|+++++++++.|+++++|++.
T Consensus 354 -------~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 354 -------SDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp -------SSSSEEEEECTTSCEEEEECC
T ss_pred -------CCCCEEEEeeCCCCEEEEecC
Confidence 789999999999999999976
No 36
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-36 Score=334.48 Aligned_cols=294 Identities=17% Similarity=0.189 Sum_probs=232.2
Q ss_pred HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeee-cC-CCCCeEEEEE
Q 001352 328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RD-PGVSVNRVVW 405 (1093)
Q Consensus 328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~V~~v~~ 405 (1093)
+++|.+|++.|++++|+|+ +||+|+.|++|+|||+.++....... + .+ |...|.+++|
T Consensus 7 ~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~-----------------~~~~~h~~~v~~v~~ 66 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDV-----------------LDETAHKKAIRSVAW 66 (330)
T ss_dssp EEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEE-----------------ECTTCCCSCEEEEEE
T ss_pred ceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEE-----------------EecCCccCCEEEEEE
Confidence 3568899999999999998 59999999999999998764221100 2 34 9999999999
Q ss_pred CCCCCEEEEEEcCCEEEEEEccCCC----cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC----Cc
Q 001352 406 SPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GS 477 (1093)
Q Consensus 406 s~dg~~las~~~d~~i~iwd~~~~~----~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~----~~ 477 (1093)
+|++++||+|+.|++|+|||+.... .......+.+|...|.+++|+|+++ +|++|+.|++|++||+.. .+
T Consensus 67 sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~ 144 (330)
T 2hes_X 67 RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYE 144 (330)
T ss_dssp CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCE
T ss_pred CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeE
Confidence 9999999999999999999996432 1233446789999999999999999 899999999999999943 25
Q ss_pred eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC--CceEEecCCCCceEEEEEccC--CCEEEEEecCCC
Q 001352 478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKE 553 (1093)
Q Consensus 478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~~~ 553 (1093)
++..+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+.+|...|.+++|+|+ +.+|++++.
T Consensus 145 ~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~--- 219 (330)
T 2hes_X 145 CISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD--- 219 (330)
T ss_dssp EEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET---
T ss_pred EEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC---
Confidence 6778899999999999965 5679999999999999998766 456678889999999999999 678998886
Q ss_pred CceeEEEEeCCCC--------eeeeeeec-ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--EEEEecCCC
Q 001352 554 GESFLVEWNESEG--------AIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGG 622 (1093)
Q Consensus 554 ~~~~i~iwd~~~~--------~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~ 622 (1093)
++.|++||+.++ .....+.+ |. ..|.+++|++++ ++++++.||.|++||..+++. .... ...+
T Consensus 220 -D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h 293 (330)
T 2hes_X 220 -DSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCH 293 (330)
T ss_dssp -TSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTT
T ss_pred -CCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-cccc
Confidence 667999998765 33344443 44 889999999764 899999999999999988743 3222 1223
Q ss_pred CC-CCceEEEec--CCCEEEEEECCCeEEEEEcCC
Q 001352 623 LP-ENPRICFNK--NGTLLAVIANENRIKILETPE 654 (1093)
Q Consensus 623 ~~-~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~ 654 (1093)
.. .|.+++|+| ++++|++++.||.|++|++..
T Consensus 294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 33 689999999 789999999999999999864
No 37
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.7e-36 Score=341.31 Aligned_cols=303 Identities=15% Similarity=0.229 Sum_probs=247.0
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 412 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l 412 (1093)
+|.+.|.+++|||||++ ||+|+ +++++||++.+|+.+.......-.. .....+.......+...|.+++|+|||++|
T Consensus 62 ~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEECCCCCEE
Confidence 69999999999999994 78876 6899999999998876422100000 000000000111344469999999999999
Q ss_pred EEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEe
Q 001352 413 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 492 (1093)
Q Consensus 413 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 492 (1093)
|+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.++++...+. +...+.++
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 999999999999999886444 6889999999999999999 89999999999999999999988876 66779999
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352 493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 565 (1093)
Q Consensus 493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 565 (1093)
++++. ++.+|++++.||.|++||++++.....+ ..|...|.+++|+|+|++|++++. ++.|++||+.+
T Consensus 213 ~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~wd~~~ 287 (393)
T 1erj_A 213 AVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQN 287 (393)
T ss_dssp EECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC--
T ss_pred EEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEEEECCC
Confidence 98653 6689999999999999999988776655 467789999999999999999986 67799999876
Q ss_pred C------------eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec
Q 001352 566 G------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 633 (1093)
Q Consensus 566 ~------------~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 633 (1093)
. .+...+.+|. ..|.+++|+|++.+|++|+.||.|++||..+++.+..+..|. ..|.+++|++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~v~~~~ 362 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISVAVAN 362 (393)
T ss_dssp -------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECS
T ss_pred CCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEEEEecC
Confidence 3 3445666766 889999999999999999999999999999999998888664 4689999876
Q ss_pred ------CCCEEEEEECCCeEEEEEcCC
Q 001352 634 ------NGTLLAVIANENRIKILETPE 654 (1093)
Q Consensus 634 ------~~~~l~~~~~dg~i~iw~~~~ 654 (1093)
++++|++++.||+|++|+...
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999764
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-37 Score=354.52 Aligned_cols=353 Identities=13% Similarity=0.188 Sum_probs=274.1
Q ss_pred CCceeeeecCCCceEEEEE----------ccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352 336 SSPMSMDFHPVQHTLLLVG----------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 405 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 405 (1093)
..|.+++|+|+|+.++|+| +.|+.|+|||+.++..... .....|...|.+++|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~~~~ 75 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFNDLDW 75 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEEEEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEEEEE
Confidence 4799999999998679999 8899999999998763210 002358899999999
Q ss_pred CCCCCEEEEEEcCCEEEEEEccCCCc-ccceEEeccccccEEEEEeeCC-CCcEEEEEEcCCCcEEEEECCCCc------
Q 001352 406 SPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS------ 477 (1093)
Q Consensus 406 s~dg~~las~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~------ 477 (1093)
+|++++|++++.|+.|++||+.+... ......+.+|...|.+++|+|+ ++ +|++++.|+.|++||+.+++
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~ 153 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSNY 153 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTTC
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccccc
Confidence 99999999999999999999987211 1234467899999999999999 66 79999999999999999887
Q ss_pred eeEE---eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCceEEEEEccCC-CEEEE
Q 001352 478 RTYS---FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLFS 547 (1093)
Q Consensus 478 ~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~d~-~~l~~ 547 (1093)
.... +..|...|.+++|++. ++.++++++.||.|++||+++.+....+..+ ...+.+++|+|++ .++++
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 154 TPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp CCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred cccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 3333 4679999999999764 2579999999999999999998888888776 6789999999997 57777
Q ss_pred EecCCCCceeEEEEeCCCC-eeeeeee-cccccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCC
Q 001352 548 CGTSKEGESFLVEWNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 624 (1093)
Q Consensus 548 ~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 624 (1093)
++.++ .++.|++||++++ ..+..+. +|. ..|.+++|+| +++++++++.||.|++||+.+++.+..+..+. .
T Consensus 233 ~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~--~ 306 (416)
T 2pm9_A 233 ATGSD-NDPSILIWDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG--N 306 (416)
T ss_dssp EECCS-SSCCCCEEETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS--S
T ss_pred EECCC-CCceEEEEeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC--C
Confidence 76532 1227999999986 6667776 666 8999999999 89999999999999999999999999988664 4
Q ss_pred CCceEEEecCC-CEEEEEECCCeEEEEEcCCCceeeeccc--ccccceeeeecCCCceee---------------eeccC
Q 001352 625 ENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGV--LSDNLRKLSVNPISTVTG---------------AGIAN 686 (1093)
Q Consensus 625 ~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---------------~~~~~ 686 (1093)
.|.+++|+|++ .++++++.|+.|++|++.+......... .........+.+.....+ .....
T Consensus 307 ~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (416)
T 2pm9_A 307 WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPS 386 (416)
T ss_dssp CCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCS
T ss_pred ceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCc
Confidence 68999999999 8999999999999999987654332211 000000011111100000 00111
Q ss_pred CceEecCCCCCCCccceeecccccceecceee
Q 001352 687 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 718 (1093)
Q Consensus 687 ~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 718 (1093)
..+.| +|+|+++++++.|+.|++|++.+
T Consensus 387 ~~~~~----s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 387 PAAHW----AFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCCEE----ETTTEEECBCTTSSCBCCBCCCC
T ss_pred cceEE----eeCCeEEEEeCCCCeEEEEEecc
Confidence 13344 78999999999999999999763
No 39
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-36 Score=334.19 Aligned_cols=319 Identities=16% Similarity=0.217 Sum_probs=232.0
Q ss_pred ecCCCC-CeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEE
Q 001352 393 VRDPGV-SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 471 (1093)
Q Consensus 393 ~~~h~~-~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 471 (1093)
+.+|.. .|.+++|+|||++||+|+.|++|+|||+.++..........+|...|.+++|+|+++ +|++|+.|++|++|
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~iw 88 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCIW 88 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEEE
Confidence 678987 999999999999999999999999999998754333333468999999999999999 89999999999999
Q ss_pred ECCCC--ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001352 472 DAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 549 (1093)
Q Consensus 472 d~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 549 (1093)
|+.++ +++..+.+|...|.+++|+| ++.+|++++.|+.|++||++.....
T Consensus 89 ~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~-------------------------- 140 (345)
T 3fm0_A 89 KKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEY-------------------------- 140 (345)
T ss_dssp EECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCE--------------------------
T ss_pred EccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCe--------------------------
Confidence 98877 45778889999999999865 5678999999999999987542110
Q ss_pred cCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceE
Q 001352 550 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 629 (1093)
Q Consensus 550 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 629 (1093)
..+..+.+|. ..|.+++|+|++++|++++.|++|++||..+++........++...|.++
T Consensus 141 -----------------~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l 200 (345)
T 3fm0_A 141 -----------------ECVSVLNSHT---QDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 200 (345)
T ss_dssp -----------------EEEEEECCCC---SCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred -----------------EEEEEecCcC---CCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEE
Confidence 1122334455 78999999999999999999999999999887654333333445679999
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001352 630 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 709 (1093)
Q Consensus 630 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 709 (1093)
+|+|+|++|++++.|++|++|+........ .+ .....
T Consensus 201 ~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~-------~~----------------------------------~~~~~-- 237 (345)
T 3fm0_A 201 AFDPSGQRLASCSDDRTVRIWRQYLPGNEQ-------GV----------------------------------ACSGS-- 237 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEEECTTCTT-------CC----------------------------------CCC----
T ss_pred EECCCCCEEEEEeCCCeEEEeccccCCCCc-------cc----------------------------------eeecc--
Confidence 999999999999999999999864221000 00 00000
Q ss_pred cceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCC
Q 001352 710 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 789 (1093)
Q Consensus 710 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1093)
.+....+.... +
T Consensus 238 ----------------------------------~~~~~~~~~~~----------------------------------~ 249 (345)
T 3fm0_A 238 ----------------------------------DPSWKCICTLS----------------------------------G 249 (345)
T ss_dssp -----------------------------------CEEEEEEEEC----------------------------------S
T ss_pred ----------------------------------CCccceeEEec----------------------------------C
Confidence 00000000000 0
Q ss_pred CceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCce---------eEEEECCCCCCeEEEEEcCCCCCE
Q 001352 790 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK---------TILTIMPPSPTATSLAFNPHDNNV 859 (1093)
Q Consensus 790 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~---------~~~~~~~~~~~i~~l~~s~~d~~~ 859 (1093)
.|...|.+++|+|++..|++++ |+.|++|+...+. ......+|...|++++|+|++..+
T Consensus 250 -----------~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 318 (345)
T 3fm0_A 250 -----------FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL 318 (345)
T ss_dssp -----------SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTE
T ss_pred -----------CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceE
Confidence 1555666777777777777666 5677777765432 112335799999999999943469
Q ss_pred EEEEeCCCeEEEEEcCCcceeeec
Q 001352 860 IAIGMDDSTILIYNARSSEVISKL 883 (1093)
Q Consensus 860 lasg~~dg~i~iwd~~~~~~~~~l 883 (1093)
||+|+.||+|++|++.+++.....
T Consensus 319 laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 319 LASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEEETTSCEEEEEECC-------
T ss_pred EEEcCCCCcEEEEEecCCCCcccc
Confidence 999999999999999987765544
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.3e-36 Score=332.94 Aligned_cols=324 Identities=13% Similarity=0.156 Sum_probs=272.4
Q ss_pred CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 413 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la 413 (1093)
|.+.|.+++|||||++ ++++..++.+.+|+......... ..+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence 4568999999999994 77777667666665544322211 447999999999999999999
Q ss_pred EEEcCCEEEEEEccCCCcccceEEec--cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc--eeEEeecCCCCe
Q 001352 414 VAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV 489 (1093)
Q Consensus 414 s~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~--~~~~~~~h~~~v 489 (1093)
+++ |+.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999887655554554 7999999999999999 89999999999999999887 667788899999
Q ss_pred EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352 490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 569 (1093)
Q Consensus 490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 569 (1093)
.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+.+++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999965 6679999999999999999999888888889999999999999999999986 677999999999888
Q ss_pred eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001352 570 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 649 (1093)
Q Consensus 570 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 649 (1093)
..+.. . ..+.+++|+|+++++++++.+|.|++||+.+++... +. .+...+.+++|+|+++++++++.||.|++
T Consensus 219 ~~~~~-~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 219 QQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LH--LHESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp EEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-EC--CCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeecC-C---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-Ec--CCccceeEEEECCCCCEEEEecCCCcEEE
Confidence 77653 3 689999999999999999999999999999887653 33 33456999999999999999999999999
Q ss_pred EEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcccccccc
Q 001352 650 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 729 (1093)
Q Consensus 650 w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 729 (1093)
|++.+++.+...
T Consensus 292 ~~~~~~~~~~~~-------------------------------------------------------------------- 303 (337)
T 1gxr_A 292 WRTPYGASIFQS-------------------------------------------------------------------- 303 (337)
T ss_dssp EETTTCCEEEEE--------------------------------------------------------------------
T ss_pred EECCCCeEEEEe--------------------------------------------------------------------
Confidence 999876443211
Q ss_pred CccccccceEEEEeecCCceEEEeeccceeEEeee
Q 001352 730 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 764 (1093)
Q Consensus 730 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~ 764 (1093)
.+...+.+++|+|+++.+++++.||.+++|++
T Consensus 304 ---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 304 ---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 14456788888888888888888888888875
No 41
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.2e-35 Score=326.46 Aligned_cols=296 Identities=21% Similarity=0.272 Sum_probs=252.1
Q ss_pred ecCCCCCeEEEEECCCC-CEEEEEEcCCEEEEEEccCCCcc--cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352 393 VRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 469 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg-~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 469 (1093)
+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+.... .....+.+|...|.+++|+|+++ ++++|+.|++|+
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v~ 90 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTLR 90 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEEE
Confidence 78999999999999965 89999999999999999754321 23446889999999999999999 899999999999
Q ss_pred EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccC------CC
Q 001352 470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN------GR 543 (1093)
Q Consensus 470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d------~~ 543 (1093)
+||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||++ ......+..|...+.++.++|. +.
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CC
T ss_pred EEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 999999999999999999999999965 66799999999999999996 4566778889999999999985 44
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCC
Q 001352 544 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 623 (1093)
Q Consensus 544 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 623 (1093)
.+++++. ++.|++||+.+++....+.+|. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 168 ~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--- 237 (319)
T 3frx_A 168 TIISAGN----DKMVKAWNLNQFQIEADFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--- 237 (319)
T ss_dssp EEEEEET----TSCEEEEETTTTEEEEEECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---
T ss_pred EEEEEeC----CCEEEEEECCcchhheeecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---
Confidence 7888876 6679999999999999998887 89999999999999999999999999999999999888764
Q ss_pred CCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccce
Q 001352 624 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 703 (1093)
Q Consensus 624 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 703 (1093)
..+.+++|+|++.++++++.+ .+++|++.....+..+..+...
T Consensus 238 ~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~------------------------------------ 280 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG------------------------------------ 280 (319)
T ss_dssp SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT------------------------------------
T ss_pred CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc------------------------------------
Confidence 358999999999999988865 5999998865444333211000
Q ss_pred eecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecC
Q 001352 704 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 766 (1093)
Q Consensus 704 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~ 766 (1093)
....+...+.+++|+|+|++|++++.||.|++|++..
T Consensus 281 --------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 281 --------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp --------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred --------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 0012456788999999999999999999999998753
No 42
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1e-35 Score=331.64 Aligned_cols=300 Identities=18% Similarity=0.260 Sum_probs=257.9
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
.+|+||++.|++++|+|++..+||||+.||+|+|||+.+++..... ....+.+|...|.+++|+||
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~s~d 97 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVISSD 97 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEECTT
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEECCC
Confidence 4789999999999999985447999999999999999887643221 11237789999999999999
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee-EEeecCCC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGA 487 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~h~~ 487 (1093)
|++|++++.|+.|++|+...+.... ....+...+..+.+++++. .+++++.|+.+++||+...... ..+.+|..
T Consensus 98 g~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~ 172 (340)
T 4aow_A 98 GQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred CCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence 9999999999999999998875433 5567888999999999999 7999999999999998776543 44577999
Q ss_pred CeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352 488 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 567 (1093)
Q Consensus 488 ~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 567 (1093)
.+..++|.+.+...++++++.|+.|++||+.+......+..+...|.+++|+|++++|++++. ++.|++||+.+++
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLNEGK 248 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETTTTE
T ss_pred cccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEeccCc
Confidence 999999988877789999999999999999999999999999999999999999999999986 7789999999999
Q ss_pred eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec-------CCCCCCCceEEEecCCCEEEE
Q 001352 568 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-------GGGLPENPRICFNKNGTLLAV 640 (1093)
Q Consensus 568 ~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~v~~s~~~~~l~~ 640 (1093)
.+..+..+ ..+.++.|+|++ .+++++.|+.|++||++++..+..+.. ..+...|.+++|+|+|++|++
T Consensus 249 ~~~~~~~~----~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 249 HLYTLDGG----DIINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp EEEEEECS----SCEEEEEECSSS-SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred eeeeecCC----ceEEeeecCCCC-ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 98888764 479999999986 466677899999999999888776643 234567899999999999999
Q ss_pred EECCCeEEEEEcCCCc
Q 001352 641 IANENRIKILETPESN 656 (1093)
Q Consensus 641 ~~~dg~i~iw~~~~~~ 656 (1093)
++.||.|++|++.++.
T Consensus 324 gs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 324 GYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTSCEEEEEEEC--
T ss_pred EeCCCEEEEEeCCCcC
Confidence 9999999999998763
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.5e-35 Score=323.76 Aligned_cols=290 Identities=20% Similarity=0.289 Sum_probs=259.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.+|...|.+++|+|++++||+|+.|+.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIWD 93 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEEE
Confidence 78999999999999999999999999999999999886544 6789999999999999999 899999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
+.+++++..+.+|...|.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++.
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 169 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-- 169 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC--
Confidence 999999999999999999999965 5679999999999999999999988899999999999999999999999986
Q ss_pred CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
++.|++||+.+++.+..+.... ...+..++|+|+++++++++.||.|++||+.+++.+..+..+..........++
T Consensus 170 --d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 170 --DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp --TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEE
T ss_pred --CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEE
Confidence 6679999999998877765433 367999999999999999999999999999999999888766543333344454
Q ss_pred -cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec--ccc
Q 001352 633 -KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AEN 709 (1093)
Q Consensus 633 -~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~d~ 709 (1093)
+++.++++++.||.|++||+.+++.+..+.+|...+.+++++ |+++.+++++ .|+
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------------------p~~~~l~s~~~~~d~ 303 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH----------------------PTENIIASAALENDK 303 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------SSSSEEEEEECTTTC
T ss_pred eCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec----------------------CcCCceEEEEccCCc
Confidence 678999999999999999999999999999999999999887 6677788776 689
Q ss_pred cceeccee
Q 001352 710 KSEVEKPL 717 (1093)
Q Consensus 710 ~i~~w~~~ 717 (1093)
+|++|+.+
T Consensus 304 ~i~~W~~d 311 (312)
T 4ery_A 304 TIKLWKSD 311 (312)
T ss_dssp CEEEEECC
T ss_pred cEEEecCC
Confidence 99999854
No 44
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-35 Score=321.67 Aligned_cols=306 Identities=15% Similarity=0.182 Sum_probs=232.3
Q ss_pred CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352 565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA 642 (1093)
Q Consensus 565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 642 (1093)
+.+.+..+.+|. ..|.+++|+|+ +|++|+.|++|++||+.++ +....+....+...|.+++|+|++++|++++
T Consensus 3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 455677788887 89999999987 8999999999999999875 3444553322456799999999999999999
Q ss_pred CCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCc
Q 001352 643 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 722 (1093)
Q Consensus 643 ~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~ 722 (1093)
.|++|++|+........
T Consensus 78 ~D~~v~iw~~~~~~~~~--------------------------------------------------------------- 94 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT--------------------------------------------------------------- 94 (330)
T ss_dssp TTSCEEEEEC----------------------------------------------------------------------
T ss_pred CCCcEEEEEcccCcCcc---------------------------------------------------------------
Confidence 99999999975320000
Q ss_pred cccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCC
Q 001352 723 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 802 (1093)
Q Consensus 723 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1093)
. ..+ . ... + .+|
T Consensus 95 -----------~-----------~~~-~-----------------------------------------~~~--~--~~h 106 (330)
T 2hes_X 95 -----------F-----------EMD-L-----------------------------------------LAI--I--EGH 106 (330)
T ss_dssp -----------C-----------CCE-E-----------------------------------------EEE--E--C--
T ss_pred -----------c-----------cce-e-----------------------------------------EEE--E--cCC
Confidence 0 000 0 000 0 037
Q ss_pred CCCeeEEEEccCCCEEEEEe-CCeEEEEEccC----ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001352 803 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 877 (1093)
Q Consensus 803 ~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~ 877 (1093)
...|.+++|+|+|++|++++ |++|++||+.. .+.+..+.+|...|.+++|+| ++.+|++|+.|++|++||..++
T Consensus 107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence 77888889999988888887 68899999842 356778899999999999999 8999999999999999999876
Q ss_pred --ceeeecccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCce---eeeeeeecCCC-cccCCCCceEEEEccCC
Q 001352 878 --EVISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQ 949 (1093)
Q Consensus 878 --~~~~~l~~h~~~V~~l~~s~d--g~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~-~~~~~~~v~~~~~s~dg 949 (1093)
+++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+.. ..........+ |. ..|.+++|++++
T Consensus 186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~ 262 (330)
T 2hes_X 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG 262 (330)
T ss_dssp EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS
T ss_pred CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC
Confidence 678889999999999999998 77999999999999999975421 11122333333 44 379999999877
Q ss_pred CEEEEEeCCeEEEEEcCCcc--eeeeeecCCCC-CEEEEEEcc--CCCEEEEEeCCCcEEEEEcCC
Q 001352 950 TRFLLVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus 950 ~~l~~~~d~~i~vwd~~~~~--~~~~~~~~h~~-~v~~~~fs~--dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
.++..+.|+.|++||..+++ .......+|.. .|.+++|+| |+++|++++.||+|++|++..
T Consensus 263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 54444789999999998874 34444467876 999999999 789999999999999999865
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.4e-35 Score=333.36 Aligned_cols=293 Identities=17% Similarity=0.214 Sum_probs=247.8
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEecccc------------------ccEEEEEeeCCCCc
Q 001352 395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ 456 (1093)
Q Consensus 395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~------------------~~v~~~~~s~d~~~ 456 (1093)
+|...|.+++|||||++||+|+ ++++++|++.+++.+. .+.+|. ..|.+++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 5999999999999999999986 6789999999987554 343332 2499999999999
Q ss_pred EEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEE
Q 001352 457 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 536 (1093)
Q Consensus 457 l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 536 (1093)
+|++|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+++++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999999999999999999999999965 66799999999999999999887766665 44578999
Q ss_pred EEcc-CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecc----cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001352 537 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 611 (1093)
Q Consensus 537 ~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~ 611 (1093)
+|+| +++++++++. ++.|++||+.++..+..+... ..|...|.+++|+|+++++++++.||.|++||+.+.
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~ 288 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA 288 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999 8999999986 667999999999887776311 123388999999999999999999999999999764
Q ss_pred c------------eEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCce
Q 001352 612 Q------------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 679 (1093)
Q Consensus 612 ~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 679 (1093)
. +...+..| ...|.+++|+|++.+|++++.|+.|++||..++..+..+.+|...|.++++++....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 366 (393)
T 1erj_A 289 NNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366 (393)
T ss_dssp ------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred CCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence 3 33344444 446899999999999999999999999999999999999999999999999864332
Q ss_pred eeeeccCCceEecCCCCCCCccceeecccccceecceee
Q 001352 680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 718 (1093)
Q Consensus 680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 718 (1093)
.|+++++++++.|+++++|++..
T Consensus 367 ----------------~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 367 ----------------GPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ----------------CTTCEEEEEEETTSEEEEEEEEE
T ss_pred ----------------CCCCCEEEEECCCCcEEECcccc
Confidence 57899999999999999999763
No 46
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=8.7e-34 Score=363.28 Aligned_cols=529 Identities=10% Similarity=0.022 Sum_probs=371.6
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC------CCcEE
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIK 469 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~ 469 (1093)
+...+.+.+||| ++||+++. +.|++|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456789999995 58888876 68999999887532 4678999999999999999 5666543 24799
Q ss_pred EEECCCCceeEEeecCCCCe-------EEeeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEE
Q 001352 470 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM 536 (1093)
Q Consensus 470 vwd~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~ 536 (1093)
+||+.+++ ...+..|...+ ..++|+| ||+++++++.+ ..|.+|++..+.... +... ....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~--~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLG--PATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSC--SCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEE-ecCC--Cccee
Confidence 99988876 57788888888 8889965 55677777754 357777776554332 2222 23467
Q ss_pred EEccCCCEEEEEecCCC--------CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352 537 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 608 (1093)
Q Consensus 537 ~~s~d~~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~ 608 (1093)
+|+| | ++++++...+ +.....+|....+.....+.+|. ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST 231 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence 7999 8 7777642211 12224455332223344556666 88999999988 56667788899999986
Q ss_pred CC-CceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCC
Q 001352 609 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 687 (1093)
Q Consensus 609 ~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 687 (1093)
.. +.....+..+. .+...+|+|||+.++.+. ++.|++|+.... .+..+..+....
T Consensus 232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~------------------- 287 (1045)
T 1k32_A 232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLES------------------- 287 (1045)
T ss_dssp ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCB-------------------
T ss_pred eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccc-------------------
Confidence 53 44444554332 367789999999998885 789999998432 222221100000
Q ss_pred ceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEee-cCCceEEEeeccceeEEeeecC
Q 001352 688 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPR 766 (1093)
Q Consensus 688 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~v~vw~~~~ 766 (1093)
.. ....+...+.+++|+ |+|+.+++++ ++.+.+|+...
T Consensus 288 ----------------------~~------------------~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 288 ----------------------PE------------------DRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp ----------------------CC------------------SEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred ----------------------cc------------------cccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence 00 000144567789999 9999888877 77888876543
Q ss_pred cccCcCcccccccCCcccCCCCCCceeeccCCCCCCCC-CeeEEEEccCCCEEEEEeC-CeEE-EEEccCceeEEEECCC
Q 001352 767 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE-AVPCFALSKNDAYLFSASG-GVIS-LYIVMTFKTILTIMPP 843 (1093)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~s~dg~~la~~~d-g~i~-iwd~~~~~~~~~~~~~ 843 (1093)
. . ... +. .+.. .+..++|+ ||+.++++++ +.+. +|++.+++.. .+..|
T Consensus 327 ~----------------------~-~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~ 377 (1045)
T 1k32_A 327 T----------------------Y-VLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN 377 (1045)
T ss_dssp S----------------------B-EEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC
T ss_pred C----------------------c-eEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC
Confidence 2 1 111 11 2555 78899999 9999999885 6688 8898877654 44477
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCC----------cEEE
Q 001352 844 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------QIFV 913 (1093)
Q Consensus 844 ~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg----------~i~i 913 (1093)
...+..++|+| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++ .|++
T Consensus 378 ~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 378 LGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp CCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred ccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 78999999999 999999999999999999999998887778999999999999999999887654 8999
Q ss_pred EeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcce----------------------
Q 001352 914 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC---------------------- 970 (1093)
Q Consensus 914 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~---------------------- 970 (1093)
||+.+++. .....+.. .+..++|+|||++|+. +.++...+|+......
T Consensus 457 ~d~~~g~~------~~l~~~~~---~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1045)
T 1k32_A 457 YDMEGRKI------FAATTENS---HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 527 (1045)
T ss_dssp EETTTTEE------EECSCSSS---BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred EECCCCcE------EEeeCCCc---ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence 99998652 11222222 4778999999999988 4445555554322111
Q ss_pred --------------------eeeeecCCCCCEEEEEEccCCCEEEE-------------EeCCCcEEEEEcCCCceEEEe
Q 001352 971 --------------------LKQWFPISSVPISQATFSCDCRMVFT-------------SFVDGTLSIHEASNLEVQCRI 1017 (1093)
Q Consensus 971 --------------------~~~~~~~h~~~v~~~~fs~dg~~l~t-------------~~~dg~v~vwd~~~~~~~~~~ 1017 (1093)
.......|.+.+..++|+|||+++++ ...+..|.+||+.+++.....
T Consensus 528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 607 (1045)
T 1k32_A 528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK 607 (1045)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE
T ss_pred cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee
Confidence 01112346678999999999987875 123457888999988754222
Q ss_pred ccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCC
Q 001352 1018 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1065 (1093)
Q Consensus 1018 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1065 (1093)
. ....++++| ||++|++++.+ .|++|++....
T Consensus 608 ~--------------~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 608 N--------------NLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp E--------------EEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred c--------------CcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 1 123578999 68999998877 89999996543
No 47
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-36 Score=346.48 Aligned_cols=384 Identities=12% Similarity=0.137 Sum_probs=288.2
Q ss_pred eeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeee-cCCCCCeEEEEECC-CCCEEEEEEc
Q 001352 340 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV-RDPGVSVNRVVWSP-DGSLLGVAYS 417 (1093)
Q Consensus 340 ~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~s~-dg~~las~~~ 417 (1093)
...|+|+++. +++++ .|+ .+++.+.. + .+|.+.|.+++|+| ++++||+|+.
T Consensus 32 ~~~f~~~~~~-~~~~~------~w~-~~g~~~~~-------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~ 84 (437)
T 3gre_A 32 YKEFGPIQEI-VRSPN------MGN-LRGKLIAT-------------------LMENEPNSITSSAVSPGETPYLITGSD 84 (437)
T ss_dssp CGGGCCCCCC-CCCCC------GGG-CCCCEEEE-------------------ECTTTTSCEEEEEEECSSSCEEEEEET
T ss_pred hhhcCCcccc-ccccc------ccc-ccceEEee-------------------eccCCCCceEEEEECCCCCCEEEEecC
Confidence 3468999985 55543 377 44555543 4 78999999999999 9999999999
Q ss_pred CCEEEEEEccC---CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC---CCceeEEeecCCCCeEE
Q 001352 418 KHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYS 491 (1093)
Q Consensus 418 d~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~~~~h~~~v~~ 491 (1093)
|++|+|||+.+ +...+....+ +|...|.+++|+|+++ +|++++.||+|++||+. +++.+..+.+| .+..
T Consensus 85 dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~ 159 (437)
T 3gre_A 85 QGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRK 159 (437)
T ss_dssp TSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEE
T ss_pred CceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEE
Confidence 99999999987 5533333333 5999999999999999 89999999999999994 77877777766 6777
Q ss_pred eeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEE--EccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352 492 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIK 569 (1093)
Q Consensus 492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~--~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 569 (1093)
+.+.+.+ +...+.++. +++++.++++++. ++.|++||+.+++.+
T Consensus 160 ~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~ 205 (437)
T 3gre_A 160 INLKNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERL 205 (437)
T ss_dssp EEGGGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEE
T ss_pred EEccCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeee
Confidence 7765431 122334444 6789999999986 677999999999999
Q ss_pred eeeec--ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe----cCCCEEEEEEC
Q 001352 570 RTYQG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIAN 643 (1093)
Q Consensus 570 ~~~~~--~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~ 643 (1093)
..+.+ |. ..|.+++|+|+++++++|+.||.|++||+++++.+..+..... ..|.+++|+ +++.+|++++.
T Consensus 206 ~~~~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~ 281 (437)
T 3gre_A 206 QIIENSPRH---GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSS 281 (437)
T ss_dssp EEEECCGGG---CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEEST
T ss_pred EEEccCCCC---CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcC
Confidence 99988 55 8999999999999999999999999999999999988863322 368899665 56889999999
Q ss_pred CCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcc
Q 001352 644 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE 723 (1093)
Q Consensus 644 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~ 723 (1093)
||.|++||+.+++.+..+.++...+..+.++|
T Consensus 282 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 313 (437)
T 3gre_A 282 KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP------------------------------------------------ 313 (437)
T ss_dssp TEEEEEEETTTTEEEEEEESSSSCCCGGGGSC------------------------------------------------
T ss_pred CCcEEEEEcCCCcEEEEEEcCCCCCccceecc------------------------------------------------
Confidence 99999999999888777776655554443332
Q ss_pred ccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCC
Q 001352 724 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 803 (1093)
Q Consensus 724 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1093)
+++.+ .+. .+.+..|.
T Consensus 314 ----------------------~~~~l----~~~--------------------------------------~~~~~~~~ 329 (437)
T 3gre_A 314 ----------------------IEKGL----EEL--------------------------------------NFCGIRSL 329 (437)
T ss_dssp ----------------------BCSSG----GGC--------------------------------------CCCCCCSG
T ss_pred ----------------------ccccc----ccc--------------------------------------eecccccC
Confidence 22111 000 00001277
Q ss_pred CCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCC---CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce
Q 001352 804 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 879 (1093)
Q Consensus 804 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~ 879 (1093)
..|.+++|+ ++++|++++ |+.|++||+.+++....+.+|. .......+++ ...+++.. |+...+..
T Consensus 330 ~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~ 399 (437)
T 3gre_A 330 NALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHS 399 (437)
T ss_dssp GGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC------
T ss_pred CceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccc
Confidence 889999999 788899988 7999999999999998888764 3455666776 55555443 33344455
Q ss_pred eeecccccCCeEEEEEeCC--CCEEEEEeCCCcEEEEe
Q 001352 880 ISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWD 915 (1093)
Q Consensus 880 ~~~l~~h~~~V~~l~~s~d--g~~l~s~s~dg~i~iwd 915 (1093)
...+..|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 400 ~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 400 VDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 5666779999999999998 78999999999999995
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.3e-35 Score=341.60 Aligned_cols=346 Identities=13% Similarity=0.120 Sum_probs=283.8
Q ss_pred CeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce
Q 001352 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 478 (1093)
Q Consensus 399 ~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 478 (1093)
.+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++++.|+.|++||+.+++.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcce
Confidence 45579999999999999999999999999876554 23345 4455667899999 899999999999999999999
Q ss_pred eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352 479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 558 (1093)
Q Consensus 479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 558 (1093)
...+.+|...|.+++|++ ++.+|++++.||.|++||+.+.+....+..|...|.+++|+|++++|++++. ++.|
T Consensus 132 ~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v 205 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGTI 205 (420)
T ss_dssp EEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSCE
T ss_pred eeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCcE
Confidence 999899999999999965 5679999999999999999999999999999999999999999999999986 6679
Q ss_pred EEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE
Q 001352 559 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 638 (1093)
Q Consensus 559 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 638 (1093)
++||+.+++.+..+..+..+...+.++++.|.+...+ .. .+...+.+++|+|+++++
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------~~--~~~~~v~~~~~s~~~~~l 262 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL---------------------HE--ISTSKKNNLEFGTYGKYV 262 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSC---------------------GG--GCCCCCCTTCSSCTTEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCccee---------------------ee--cccCcccceEEcCCCCEE
Confidence 9999999999999988766668899998877643220 01 112457889999999999
Q ss_pred EEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceee
Q 001352 639 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 718 (1093)
Q Consensus 639 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 718 (1093)
++++.||.|++||+.++.......
T Consensus 263 ~~~~~dg~i~i~d~~~~~~~~~~~-------------------------------------------------------- 286 (420)
T 3vl1_A 263 IAGHVSGVITVHNVFSKEQTIQLP-------------------------------------------------------- 286 (420)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC--------------------------------------------------------
T ss_pred EEEcCCCeEEEEECCCCceeEEcc--------------------------------------------------------
Confidence 999999999999987542211100
Q ss_pred ccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCC
Q 001352 719 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 798 (1093)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1093)
T Consensus 287 -------------------------------------------------------------------------------- 286 (420)
T 3vl1_A 287 -------------------------------------------------------------------------------- 286 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeEEEEccCCC-EEEEEe-CCeEEEEEccCcee-EEEECC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001352 799 DSNSQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 874 (1093)
Q Consensus 799 ~~~~~~~v~~l~~s~dg~-~la~~~-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~ 874 (1093)
.+|...+.+++|+|++. +|++++ ||.|++||+.+++. +..+.. |...+.++.+. ++++|++++.||.|++|++
T Consensus 287 -~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 287 -SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp -CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEE
T ss_pred -cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEec
Confidence 01566788888888888 888877 68899999887644 566665 56678888654 5789999999999999999
Q ss_pred CCc---------ceeeecccccCCeEEEEEeCCCC---EEEEEeCCCcEEEEeCCC
Q 001352 875 RSS---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 875 ~~~---------~~~~~l~~h~~~V~~l~~s~dg~---~l~s~s~dg~i~iwd~~~ 918 (1093)
.+. .....+.+|.+.|.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 873 22234567889999999999999 788888999999999875
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-35 Score=342.17 Aligned_cols=350 Identities=12% Similarity=0.112 Sum_probs=282.6
Q ss_pred CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352 336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~ 415 (1093)
+.+++++|+|+|++ |++|+.||.|++||+.+++.... +..| ..+...+|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEE
Confidence 35678999999996 89999999999999988765432 3344 445566789999999999
Q ss_pred EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeec
Q 001352 416 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 495 (1093)
Q Consensus 416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 495 (1093)
+.|+.|++||+.+++... .+.+|...|++++|+|+++ +|++++.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999875443 5679999999999999999 89999999999999999999999999999999999996
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecC---CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeee
Q 001352 496 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 572 (1093)
Q Consensus 496 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 572 (1093)
+ ++.+|++++.||.|++||+++.+....+.. +...+.++++.+++... ..
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------------------~~ 243 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ-------------------------LH 243 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS-------------------------CG
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce-------------------------ee
Confidence 5 668999999999999999999888777764 44567777776653221 11
Q ss_pred ecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC-EEEEEECCCeEEEEE
Q 001352 573 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILE 651 (1093)
Q Consensus 573 ~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~ 651 (1093)
..+ ...+.+++|+|+++++++++.||.|++||+.+++....+... +...+.+++|+|+++ ++++++.||.|++||
T Consensus 244 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd 319 (420)
T 3vl1_A 244 EIS---TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWD 319 (420)
T ss_dssp GGC---CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred ecc---cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence 112 267888899999999999999999999999999888777542 335699999999999 999999999999999
Q ss_pred cCCCce-eeeccc-ccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccc-cc
Q 001352 652 TPESNS-VDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS-LL 728 (1093)
Q Consensus 652 ~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~-~~ 728 (1093)
+.++.. +..+.. +...+.++.+ ++++++++++.|+.+++|++.......... ..
T Consensus 320 ~~~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~ 376 (420)
T 3vl1_A 320 LRSPECPVGEFLINEGTPINNVYF-----------------------AAGALFVSSGFDTSIKLDIISDPESERPAIEFE 376 (420)
T ss_dssp TTCTTSCSEEEEESTTSCEEEEEE-----------------------ETTEEEEEETTTEEEEEEEECCTTCCSCEECTT
T ss_pred cCCCcCchhhhhccCCCCceEEEe-----------------------CCCCEEEEecCCccEEEEeccCCCCCccceecc
Confidence 998743 555555 4555655533 467789999999999999987533221111 00
Q ss_pred --cCccccccceEEEEeecCCc---eEEEeeccceeEEeeec
Q 001352 729 --LPSKVKANKISRLTYNNGGQ---AIFALASNGVHLMWRWP 765 (1093)
Q Consensus 729 --~~~~~~~~~i~~l~~s~~g~---~l~~~~~dg~v~vw~~~ 765 (1093)
.....+...|.+++|+|+++ .+++++.+|.+.+|++.
T Consensus 377 ~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 377 TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 01134778899999999999 89999999999999864
No 50
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.4e-35 Score=324.78 Aligned_cols=321 Identities=16% Similarity=0.261 Sum_probs=268.6
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 475 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 475 (1093)
|.++|.+++|+|||++++++..++.+.+|+..... . .....+|...|++++|+|+++ ++++++ ||.|++||+.+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA--R-QINTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE--E-EEEEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc--c-cceeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence 56789999999999999999877767666554432 2 223447999999999999999 788888 99999999988
Q ss_pred Ccee---EEee--cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEccCCCEEEEE
Q 001352 476 GSRT---YSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSC 548 (1093)
Q Consensus 476 ~~~~---~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~ 548 (1093)
++.. ..+. +|...|.+++|++ ++.+|++++.||.|++||+.+.+ ....+..+...+.+++|+|++++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred CCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEE
Confidence 7643 3333 7999999999965 66899999999999999999877 455677788899999999999999999
Q ss_pred ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCce
Q 001352 549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 628 (1093)
Q Consensus 549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 628 (1093)
+. ++.|++||+.+++.+..+.+|. ..+.+++|+|+++++++++.||.|++||+.+++.+..+... ..+.+
T Consensus 160 ~~----dg~v~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~v~~ 229 (337)
T 1gxr_A 160 CS----DGNIAVWDLHNQTLVRQFQGHT---DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT---SQIFS 229 (337)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---SCEEE
T ss_pred eC----CCcEEEEeCCCCceeeeeeccc---CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC---CceEE
Confidence 86 5669999999999999998877 89999999999999999999999999999999988887643 35889
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352 629 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 708 (1093)
Q Consensus 629 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 708 (1093)
++|+|+++++++++.++.|++|++.+.....
T Consensus 230 ~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~------------------------------------------------- 260 (337)
T 1gxr_A 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ------------------------------------------------- 260 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTSSCEEE-------------------------------------------------
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCCeEE-------------------------------------------------
Confidence 9999999999999999999999987431100
Q ss_pred ccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCC
Q 001352 709 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 788 (1093)
Q Consensus 709 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1093)
+
T Consensus 261 ----------------------------------~--------------------------------------------- 261 (337)
T 1gxr_A 261 ----------------------------------L--------------------------------------------- 261 (337)
T ss_dssp ----------------------------------E---------------------------------------------
T ss_pred ----------------------------------E---------------------------------------------
Confidence 0
Q ss_pred CCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC
Q 001352 789 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 867 (1093)
Q Consensus 789 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg 867 (1093)
..|...+.+++|+|++++|++++ +|.|++||+.+++.+... .|...+.+++|+| ++++|++++.||
T Consensus 262 -----------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg 328 (337)
T 1gxr_A 262 -----------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGDK 328 (337)
T ss_dssp -----------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEEEETTS
T ss_pred -----------cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEEecCCC
Confidence 01566778888888888888887 688999998888777554 3788999999999 899999999999
Q ss_pred eEEEEEcC
Q 001352 868 TILIYNAR 875 (1093)
Q Consensus 868 ~i~iwd~~ 875 (1093)
.|++|++.
T Consensus 329 ~i~iw~~~ 336 (337)
T 1gxr_A 329 KATVYEVI 336 (337)
T ss_dssp CEEEEEEE
T ss_pred eEEEEEEe
Confidence 99999963
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-36 Score=344.85 Aligned_cols=332 Identities=11% Similarity=0.157 Sum_probs=273.2
Q ss_pred ccccEEEEEeeCCCCcEEEEEE----------cCCCcEEEEECCCCc---eeEEeecCCCCeEEeeecccCCccEEEEEe
Q 001352 441 HVGNVNDLAFSAPCKQISVITC----------GDDKTIKVWDAVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSIS 507 (1093)
Q Consensus 441 h~~~v~~~~~s~d~~~l~l~s~----------~~d~~i~vwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 507 (1093)
+...|.+++|+|+++. +++++ +.|+.|++||+.++. .+..+ .|...|.+++|++ ++.+|++++
T Consensus 11 ~~~~v~~~~~sp~g~~-~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~--~~~~l~~~~ 86 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIP-LLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSH--NNKIIAGAL 86 (416)
T ss_dssp EEEESCBCCBCSSSSC-EEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECS--SSSCEEEEE
T ss_pred hhhhcceEeeCCCCCC-EEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECC--CCCeEEEEc
Confidence 3346889999999875 68888 889999999999886 34444 5889999999955 668999999
Q ss_pred cCCeEEEEEcCC----CCceEEecCCCCceEEEEEccC-CCEEEEEecCCCCceeEEEEeCCCCe------eeeeeeccc
Q 001352 508 VDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQ 576 (1093)
Q Consensus 508 ~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~ 576 (1093)
.||.|++||+.. ......+..|...|.+++|+|+ ++++++++. ++.|++||+.+++ ....+....
T Consensus 87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 162 (416)
T 2pm9_A 87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN----NGEIFIWDMNKCTESPSNYTPLTPGQSM 162 (416)
T ss_dssp SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS----SSCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC----CCeEEEEECCCCcccccccccccccccc
Confidence 999999999987 3467778889999999999998 889999876 6679999999887 333332122
Q ss_pred ccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEecCCC----CCCCceEEEecCC-CEEEEEECCC---eE
Q 001352 577 LQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNKNG-TLLAVIANEN---RI 647 (1093)
Q Consensus 577 ~~~~~v~~v~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~~~-~~l~~~~~dg---~i 647 (1093)
.+...|.+++|+|+ +..+++++.||.|++||+.+++.+..+..+.. ...+.+++|+|++ .++++++.|+ .|
T Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 23488999999999 78999999999999999999999988876531 3568999999987 6899999998 89
Q ss_pred EEEEcCCCce-eeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccc
Q 001352 648 KILETPESNS-VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 726 (1093)
Q Consensus 648 ~iw~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 726 (1093)
++||+.+... ...
T Consensus 243 ~~~d~~~~~~~~~~------------------------------------------------------------------ 256 (416)
T 2pm9_A 243 LIWDLRNANTPLQT------------------------------------------------------------------ 256 (416)
T ss_dssp CEEETTSTTSCSBC------------------------------------------------------------------
T ss_pred EEEeCCCCCCCcEE------------------------------------------------------------------
Confidence 9998774310 000
Q ss_pred cccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCe
Q 001352 727 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 806 (1093)
Q Consensus 727 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 806 (1093)
+. .+|...|
T Consensus 257 ----------------------------------------------------------------------~~-~~~~~~v 265 (416)
T 2pm9_A 257 ----------------------------------------------------------------------LN-QGHQKGI 265 (416)
T ss_dssp ----------------------------------------------------------------------CC-SCCSSCE
T ss_pred ----------------------------------------------------------------------ee-cCccCce
Confidence 00 0266778
Q ss_pred eEEEEcc-CCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCC-CEEEEEeCCCeEEEEEcCCcceeeec
Q 001352 807 PCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN-NVIAIGMDDSTILIYNARSSEVISKL 883 (1093)
Q Consensus 807 ~~l~~s~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~-~~lasg~~dg~i~iwd~~~~~~~~~l 883 (1093)
.+++|+| ++++|++++ |+.|++||+.+++.+..+..|...|.+++|+| ++ .+|++++.||.|++|++.+++.....
T Consensus 266 ~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 344 (416)
T 2pm9_A 266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDE 344 (416)
T ss_dssp EEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC
T ss_pred eEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECC-CCCCEEEEEecCCcEEEEEccCCCCCccc
Confidence 8899998 888899887 79999999999999999999999999999999 66 89999999999999999876543322
Q ss_pred cc-----------------------------------ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352 884 EG-----------------------------------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 884 ~~-----------------------------------h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 918 (1093)
.. |..++.+++|+|||++|++++.|+.|+||++.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 345 QETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp ----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 11 677888999999999999999999999999986
No 52
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.5e-34 Score=318.80 Aligned_cols=288 Identities=20% Similarity=0.224 Sum_probs=239.3
Q ss_pred eecCCCCCeEEEEE-----CC-CCCEEEEEEcCCEEEEEEccCCCcc----cceEEeccccccEEEEEeeCCCCcEEEEE
Q 001352 392 LVRDPGVSVNRVVW-----SP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVIT 461 (1093)
Q Consensus 392 ~~~~h~~~V~~v~~-----s~-dg~~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s 461 (1093)
.+.+|.+.|.+++| ++ |+++||+|+.|++|++||+.+++.. .....+.+|...|.+++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 48899999999999 77 9999999999999999999865421 23346789999999999999999 8999
Q ss_pred EcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec---CCCCceEEEEE
Q 001352 462 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAY 538 (1093)
Q Consensus 462 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~ 538 (1093)
++.|++|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|+.|++||+.. ....... .+...+.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence 99999999999999999999999999999999965 667999999999999999973 3333332 56778999999
Q ss_pred ccCC----------CEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352 539 SANG----------RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 608 (1093)
Q Consensus 539 s~d~----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~ 608 (1093)
+|++ .++++++. ++.|++|| .++.....+.+|. ..|.+++|+|++++|++|+.||.|++||+
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHE---SNVNHLSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCcc---ccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 9987 68888876 67899999 4566777788877 89999999999999999999999999999
Q ss_pred C-CCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceee--ecc-----------cccccceeeeec
Q 001352 609 N-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----------VLSDNLRKLSVN 674 (1093)
Q Consensus 609 ~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~-----------~~~~~i~~~~~~ 674 (1093)
. .......+... ..|.+++|+|++.+++++ .|+.+++|++.+..... .+. +|...+.+++|+
T Consensus 243 ~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 243 LNLTYPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp SCCSSCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred CCCcccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 4 44444554332 248999999999888765 57789999998765432 222 455566666665
Q ss_pred CCCceeeeeccCCceEecCCCCCCCccceeecccccceecceee
Q 001352 675 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 718 (1093)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 718 (1093)
|+++++++++.||.|++|++..
T Consensus 319 ----------------------p~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 319 ----------------------ALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp ----------------------SSSCCEEEEETTSEEEEEEEEE
T ss_pred ----------------------CCCCeEEEecCCceEEEEEEEc
Confidence 7899999999999999999764
No 53
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7e-35 Score=357.52 Aligned_cols=296 Identities=18% Similarity=0.254 Sum_probs=250.4
Q ss_pred hhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352 330 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 409 (1093)
Q Consensus 330 ~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg 409 (1093)
.|.+|++.|++++|+|++..+|++|+.|++|+|||+.++..... .....+.+|...|.+++|+|+|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~g 442 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSDG 442 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTTS
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCCC
Confidence 46789999999999998755899999999999999987543210 0011277899999999999999
Q ss_pred CEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe---ecCC
Q 001352 410 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---EGHG 486 (1093)
Q Consensus 410 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~---~~h~ 486 (1093)
++|++|+.|++|+|||+.++...+ .+.+|...|.+++|+|+++ .|++++.|++|++||.......... .+|.
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~ 517 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517 (694)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCS
T ss_pred CEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCC
Confidence 999999999999999999986554 6789999999999999999 7999999999999997655433322 4688
Q ss_pred CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352 487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 566 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 566 (1093)
..|.+++|++......+++++.||+|++||+++......+..|...|.+++|+|++++|++++. ++.|++||+.++
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~ 593 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEG 593 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTT
T ss_pred CcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCC
Confidence 9999999987665578999999999999999999988899999999999999999999999986 667999999999
Q ss_pred eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC-----------------CCCCceE
Q 001352 567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPENPRI 629 (1093)
Q Consensus 567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~v 629 (1093)
+.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.++
T Consensus 594 ~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 668 (694)
T 3dm0_A 594 KKLYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSL 668 (694)
T ss_dssp EEEECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEE
T ss_pred ceEEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeE
Confidence 988777653 4799999999987776665 56699999999998877753211 1125689
Q ss_pred EEecCCCEEEEEECCCeEEEEEcC
Q 001352 630 CFNKNGTLLAVIANENRIKILETP 653 (1093)
Q Consensus 630 ~~s~~~~~l~~~~~dg~i~iw~~~ 653 (1093)
+|+|+|++|++|+.||.|++|++.
T Consensus 669 ~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 669 NWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEcCCCCEEEEEcCCCeEEEEecc
Confidence 999999999999999999999975
No 54
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.7e-34 Score=330.14 Aligned_cols=326 Identities=16% Similarity=0.228 Sum_probs=278.8
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
+.|.+|.+.|.. +++++|+ ++++|+.||+|++||+.+++.+.. +.+|...|.+++|+
T Consensus 112 ~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 112 KVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR-- 168 (445)
T ss_dssp EEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE--
T ss_pred EEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec--
Confidence 457899987643 3556787 589999999999999999988765 77899999999997
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 488 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~ 488 (1093)
+.+|++|+.|++|++||+.+++.+. .+.+|...|.+++|++ + .+++|+.||+|++||+.+++.+..+.+|...
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~--~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 241 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGHVAA 241 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEecC--C--EEEEEeCCCEEEEEECCCCcEEEEEcCCccc
Confidence 6799999999999999999986554 6789999999999964 4 7999999999999999999999999999999
Q ss_pred eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001352 489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 568 (1093)
Q Consensus 489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 568 (1093)
|.++++ ++.++++++.||.|++||+++......+..+...+.+++| ++.++++++. ++.|++||+.+++.
T Consensus 242 v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~~ 311 (445)
T 2ovr_B 242 VRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGNC 311 (445)
T ss_dssp EEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCCE
T ss_pred EEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCCE
Confidence 999988 5578999999999999999999888899999999999999 8899999986 66799999999999
Q ss_pred eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-CCCCCceEEEecCCCEEEEEECCCeE
Q 001352 569 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANENRI 647 (1093)
Q Consensus 569 ~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i 647 (1093)
+..+.+|. ..+.++.++ ++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||.|
T Consensus 312 ~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v 384 (445)
T 2ovr_B 312 IHTLTGHQ---SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTV 384 (445)
T ss_dssp EEEECCCC---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEE
T ss_pred EEEEcCCc---ccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeE
Confidence 99998877 778887774 6799999999999999999999998887532 34568888885 6899999999999
Q ss_pred EEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcccccc
Q 001352 648 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 727 (1093)
Q Consensus 648 ~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 727 (1093)
++|++.+++.+..+...
T Consensus 385 ~iwd~~~~~~~~~~~~~--------------------------------------------------------------- 401 (445)
T 2ovr_B 385 KLWDLKTGEFIRNLVTL--------------------------------------------------------------- 401 (445)
T ss_dssp EEEETTTCCEEEEEEEC---------------------------------------------------------------
T ss_pred EEEECCCCceeeeeecc---------------------------------------------------------------
Confidence 99999987665443210
Q ss_pred ccCccccccceEEEEeecCCceEEEeeccce----eEEeeecC
Q 001352 728 LLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR 766 (1093)
Q Consensus 728 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~----v~vw~~~~ 766 (1093)
....+.+.|.+++|+|++..+++++.||. +.+||+..
T Consensus 402 --~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 402 --ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp --TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred --ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 00125667889999999999999999987 88888764
No 55
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.5e-34 Score=326.16 Aligned_cols=294 Identities=15% Similarity=0.141 Sum_probs=246.1
Q ss_pred HhhccCCCCceeeeecCCC-ceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 329 QTLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg-~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
+.+.+|.+.|++++|+|+| + +||+|+.||.|+|||+.+++...... ..+|...|.+++|+|
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~~~~~ 128 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQ-----------------GMGPGDAITGMKFNQ 128 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEEC-----------------CCSTTCBEEEEEEET
T ss_pred EeccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeee-----------------cCCcCCceeEEEeCC
Confidence 3567899999999999999 6 69999999999999999888765421 347999999999999
Q ss_pred -CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC
Q 001352 408 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 486 (1093)
Q Consensus 408 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~ 486 (1093)
++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++ ++++++.|+.|++||+ +++.+..+.+|.
T Consensus 129 ~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~~h~ 204 (383)
T 3ei3_B 129 FNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEKLHK 204 (383)
T ss_dssp TEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEECSS
T ss_pred CCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEeccCC
Confidence 789999999999999999996 33333222334568899999999999 8999999999999998 688899999999
Q ss_pred CCeEEeeecccCCcc-EEEEEecCCeEEEEEcCC----CCceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEE
Q 001352 487 APVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVE 560 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~i 560 (1093)
..|.+++|++ ++. ++++++.||.|++||+++ ......+ .+...|.+++|+| ++++|++++. ++.|++
T Consensus 205 ~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~i 277 (383)
T 3ei3_B 205 AKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRV 277 (383)
T ss_dssp SCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEE
T ss_pred CcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEE
Confidence 9999999965 455 899999999999999987 3344444 6888999999999 9999999986 677999
Q ss_pred EeCCCCeeeeeeeccccc--------------CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCC
Q 001352 561 WNESEGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 626 (1093)
Q Consensus 561 wd~~~~~~~~~~~~~~~~--------------~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 626 (1093)
||+.+++....+.+|... ...+..++|+|++++ +++.||.|++||+.+++.+..+..+.+...+
T Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~ 355 (383)
T 3ei3_B 278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGII 355 (383)
T ss_dssp EETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCC
T ss_pred EECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceE
Confidence 999999888777765311 133445667777766 7789999999999999999999876555567
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352 627 PRICFNKNGTLLAVIANENRIKILETPE 654 (1093)
Q Consensus 627 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 654 (1093)
..++|+|++++|++++ |+.|++|++.+
T Consensus 356 ~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 356 SLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEEecCccEEEEec-CCcEEEEecCC
Confidence 7789999999999997 89999999874
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.2e-33 Score=329.73 Aligned_cols=301 Identities=18% Similarity=0.237 Sum_probs=263.3
Q ss_pred HhhccCCCCc-eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 329 QTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 329 ~~l~~h~~~V-~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
.+|.+|.+.| .++.| +++ ++++|+.||+|++||+.+++.+.. +.+|.+.|.+++|+|
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~~ 172 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAH 172 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEECS
T ss_pred EEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEcC
Confidence 3578898886 56666 455 599999999999999999987765 778999999999999
Q ss_pred CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeC--CCCcEEEEEEcCCCcEEEEECCCCce-------
Q 001352 408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR------- 478 (1093)
Q Consensus 408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~------- 478 (1093)
++ +|++|+.||+|++||+.+++.+. .+.+|...|.+++|++ ++. ++++++.|++|++||+.++..
T Consensus 173 ~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~ 246 (464)
T 3v7d_B 173 GG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEE 246 (464)
T ss_dssp TT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------
T ss_pred CC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccccccc
Confidence 88 99999999999999999986544 6789999999999994 556 899999999999999988763
Q ss_pred ----------------eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC
Q 001352 479 ----------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG 542 (1093)
Q Consensus 479 ----------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~ 542 (1093)
+..+.+|...|.++.. ++.++++++.||.|++||+.+.+....+..+...|.+++|+|++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 322 (464)
T 3v7d_B 247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 322 (464)
T ss_dssp CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred CCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC
Confidence 4567789999988843 55799999999999999999999999999999999999999999
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC
Q 001352 543 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 622 (1093)
Q Consensus 543 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 622 (1093)
+++++++. ++.|++||+.+++.+..+.+|. ..|.++.|+ ++++++++.||.|++||+.++.........
T Consensus 323 ~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~-- 391 (464)
T 3v7d_B 323 KRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT-- 391 (464)
T ss_dssp TEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT--
T ss_pred CEEEEEeC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC--
Confidence 99999986 6679999999999999999887 899999997 579999999999999999998877666532
Q ss_pred CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeee-cccccccceeeeec
Q 001352 623 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVN 674 (1093)
Q Consensus 623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~ 674 (1093)
..+..++|+++++++++++ ||.|++||+.+++.+.. ...+...+.+++|+
T Consensus 392 -~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 392 -NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp -TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred -CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 3477899999999999998 89999999999988875 66778888888885
No 57
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-36 Score=346.05 Aligned_cols=335 Identities=10% Similarity=0.066 Sum_probs=247.8
Q ss_pred CCCCceeeeecCCC---------ceEEEE-------------------EccCCcEEEEecCCCceeEEeeeeeeeccccc
Q 001352 334 GSSSPMSMDFHPVQ---------HTLLLV-------------------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS 385 (1093)
Q Consensus 334 h~~~V~~~~~spdg---------~~llas-------------------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 385 (1093)
+.+.|++++|+|++ + +||+ |+.|++|+|||+.+++.....
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~----------- 199 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK----------- 199 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEE-----------
T ss_pred CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE-----------
Confidence 56689999999986 4 3555 456789999999887643210
Q ss_pred ceeeeeeecCCCCCeEEEEECCC------CCEEEEEEcCCEEEEEEccCCCcc--------cceEEeccccccEEEEEee
Q 001352 386 MLFKTALVRDPGVSVNRVVWSPD------GSLLGVAYSKHIVQLYAYHGGSDA--------RQQLEIDAHVGNVNDLAFS 451 (1093)
Q Consensus 386 ~~~~~~~~~~h~~~V~~v~~s~d------g~~las~~~d~~i~iwd~~~~~~~--------~~~~~~~~h~~~v~~~~~s 451 (1093)
...+.+|.+.|.+++|+|+ +.+||+++.||+|++||+.++... .....+.+|...|++++|+
T Consensus 200 ----~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s 275 (524)
T 2j04_B 200 ----VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL 275 (524)
T ss_dssp ----EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES
T ss_pred ----EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec
Confidence 0114568899999999997 579999999999999999877532 1233678999999999999
Q ss_pred CCCCcEEEEEEcCCCcEEEEECCCCc-eeEEeecCCCCeEEeeecccCCc-cEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001352 452 APCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAP 529 (1093)
Q Consensus 452 ~d~~~l~l~s~~~d~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 529 (1093)
+++ .|++|+.||+|++||+.++. +...+.+|...|.++++...+++ .+|++++.||+|++||+++.+....+..+
T Consensus 276 ~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~ 352 (524)
T 2j04_B 276 SPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR 352 (524)
T ss_dssp SSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEE
T ss_pred CCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccc
Confidence 864 69999999999999999874 45678999999999954335565 79999999999999999887765555444
Q ss_pred C--CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001352 530 G--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 607 (1093)
Q Consensus 530 ~--~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd 607 (1093)
. ..+.+++|+|+++.+++++. ++.|++||++++.++..+.+|. ..|.+++|+|++++|++|+.||+|++||
T Consensus 353 ~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~---~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 353 FRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRE---TTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp CSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECS---SCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred cccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCC---CceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 3 35789999999999988865 6679999999999888888887 8999999999999999999999999999
Q ss_pred CCCCceEEEEecC---CCCCCCceEEEecCCCEEEEEECCCeEEEEEcC-CCceeeecccccccceeeeecCCCceeeee
Q 001352 608 MNKVQLLTTIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPISTVTGAG 683 (1093)
Q Consensus 608 ~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 683 (1093)
+..+ .+...... .....+..++|+|++..+. ... .+.+|... ++..+..+.+|...|.+++|+|++
T Consensus 426 ~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~------ 495 (524)
T 2j04_B 426 AARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETS------ 495 (524)
T ss_dssp SCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCST------
T ss_pred chHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCC------
Confidence 8654 22111100 0111356889999998553 222 23344332 455677888999999999998542
Q ss_pred ccCCceEecCCCCCCCccceeecccccceeccee
Q 001352 684 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 717 (1093)
Q Consensus 684 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 717 (1093)
+.+..+++|+.+|.|++|++.
T Consensus 496 -------------~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 496 -------------AGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp -------------TTTTEEEEECTTSEEEEEECS
T ss_pred -------------CccHHHHhhccCceEEEEEcc
Confidence 235689999999999999976
No 58
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-33 Score=317.61 Aligned_cols=290 Identities=11% Similarity=0.099 Sum_probs=257.5
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
..|.+|++.|++++|+|+|+ +|++|+.||.|+|||+.+++.+.. +.+|...|.+++|+|+
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 85 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVDCF 85 (369)
T ss_dssp EEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTT
T ss_pred EEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEcCC
Confidence 35789999999999999998 589999999999999999988765 6789999999999999
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-----CcEEEEECCCCc------
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS------ 477 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~~------ 477 (1093)
+++|++++.|+.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++.
T Consensus 86 ~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 86 TKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeec
Confidence 9999999999999999999987655 343 888999999999999 78899888 999999988764
Q ss_pred -----eeEEeecCCC--CeEEeeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001352 478 -----RTYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCG 549 (1093)
Q Consensus 478 -----~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 549 (1093)
.+..+..|.. .+.+++|++ ++.++++++.||.|++||+.+ ......+..+...|.+++|+|++++|++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 160 KVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp EECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec
Confidence 3445556666 899999965 667999999999999999998 666778888999999999999999999997
Q ss_pred cCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCCceEE
Q 001352 550 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQLLT 615 (1093)
Q Consensus 550 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~ 615 (1093)
. ++.|++||+.+++.+..+.. . ..+..++|+|+++++++++.++ .+++||..+++.+.
T Consensus 238 ~----d~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 238 R----DTNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp T----TSEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred C----CceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence 6 66799999999999888873 3 6899999999999999999888 89999999999999
Q ss_pred EEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCc
Q 001352 616 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 656 (1093)
Q Consensus 616 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 656 (1093)
.+..+. ..|.+++|+|++++|++++.||.|++|++..+.
T Consensus 310 ~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 310 RVQGHF--GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred heeccc--CcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 988664 469999999999999999999999999998653
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4e-34 Score=326.50 Aligned_cols=293 Identities=12% Similarity=0.123 Sum_probs=254.5
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCc------eeEEeeeeeeecccccceeeeeeecCCCCCeEE
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ------KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 402 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 402 (1093)
+.|.+|.+.|++++|+| + +|++|+.||.|+|||+.+++ .+.. +.+|...|.+
T Consensus 10 ~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~ 67 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYS-------------------HFVHKSGLHH 67 (397)
T ss_dssp EESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEE-------------------EECCTTCEEE
T ss_pred hhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceE-------------------EecCCCcEEE
Confidence 45789999999999999 4 58999999999999999987 3332 6689999999
Q ss_pred EEECCC----C---CEEEEEEcCCEEEEEEccCCCcccc--eEEeccc-----cccEEEEEee----CCCCcEE-EEEEc
Q 001352 403 VVWSPD----G---SLLGVAYSKHIVQLYAYHGGSDARQ--QLEIDAH-----VGNVNDLAFS----APCKQIS-VITCG 463 (1093)
Q Consensus 403 v~~s~d----g---~~las~~~d~~i~iwd~~~~~~~~~--~~~~~~h-----~~~v~~~~~s----~d~~~l~-l~s~~ 463 (1093)
++|+|+ | ++|++++.|+.|++||+.+++.... ...+.+| ...|.+++|+ |+++ + |++++
T Consensus 68 ~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~ 145 (397)
T 1sq9_A 68 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATD 145 (397)
T ss_dssp EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEE
T ss_pred EEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEe
Confidence 999999 9 9999999999999999998875100 2367778 5899999999 9999 7 99999
Q ss_pred CCCcEEEEECCC------CceeE-----Eee-------cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE
Q 001352 464 DDKTIKVWDAVT------GSRTY-----SFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD 525 (1093)
Q Consensus 464 ~d~~i~vwd~~~------~~~~~-----~~~-------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 525 (1093)
.||.|++||+.+ ++.+. .+. .|...|.+++|++ ++ ++++++.||.|++||+++......
T Consensus 146 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~ 222 (397)
T 1sq9_A 146 VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYN 222 (397)
T ss_dssp TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEE
Confidence 999999999998 77776 774 4899999999965 56 999999999999999999888888
Q ss_pred ecC---C---CCceEEEEEccCCCEEEEEecCCCCc---eeEEEEeCCCCeeeeeeec-------------ccccCCCeE
Q 001352 526 YDA---P---GLGCTRMAYSANGRRLFSCGTSKEGE---SFLVEWNESEGAIKRTYQG-------------LQLQHNSVS 583 (1093)
Q Consensus 526 ~~~---~---~~~v~~~~~s~d~~~l~~~~~~~~~~---~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~ 583 (1093)
+.. | ...+.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |. ..|.
T Consensus 223 ~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~ 295 (397)
T 1sq9_A 223 FESQHSMINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVM 295 (397)
T ss_dssp EECCC---CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEE
T ss_pred EeccccccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccC---CcEE
Confidence 888 7 889999999999999999986 5 7899999999999999887 66 8999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe------cC-------------CCCCCCceEEEecCC---------
Q 001352 584 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG--------- 635 (1093)
Q Consensus 584 ~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~--------- 635 (1093)
+++|+|++++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++
T Consensus 296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 375 (397)
T 1sq9_A 296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADL 375 (397)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccc
Confidence 99999999999999999999999999999999988 43 014569999999998
Q ss_pred -CEEEEEECCCeEEEEEcCCC
Q 001352 636 -TLLAVIANENRIKILETPES 655 (1093)
Q Consensus 636 -~~l~~~~~dg~i~iw~~~~~ 655 (1093)
++|++++.||.|++|++.++
T Consensus 376 ~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 376 NESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp SCEEEEEETTTEEEEEEEEC-
T ss_pred cceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998765
No 60
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-35 Score=340.23 Aligned_cols=350 Identities=10% Similarity=0.041 Sum_probs=243.7
Q ss_pred CCCCeEEEEECCCC---------CEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC
Q 001352 396 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 466 (1093)
Q Consensus 396 h~~~V~~v~~s~dg---------~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~ 466 (1093)
+.+.|.+|+|+|++ ++||+|+.++. + -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C------------------Cccchhhh--hhccCCCCc
Confidence 57899999999987 79999986642 0 01368888 799999999
Q ss_pred cEEEEECCCCcee----EEeecCCCCeEEeeeccc----CCccEEEEEecCCeEEEEEcCCCCc-----------eEEec
Q 001352 467 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD 527 (1093)
Q Consensus 467 ~i~vwd~~~~~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~ 527 (1093)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999888753 456778899999999886 3467999999999999999976542 23667
Q ss_pred CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-eeeeeecccccCCCeEEE--EEcCCC-CEEEEEeCCCcE
Q 001352 528 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI 603 (1093)
Q Consensus 528 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~v--~~~~~~-~~l~~~~~dg~i 603 (1093)
.|...|.+++|++++ .|++++. ++.|++||+.++. ....+.+|. ..|.++ +|+|++ .+|++++.|++|
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 788899999999865 7888876 7789999999774 445677777 899999 578887 889999999999
Q ss_pred EEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeee
Q 001352 604 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 683 (1093)
Q Consensus 604 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 683 (1093)
+|||+++++....+..+.....+.+++|+|+++.+++++.|++|++||+.++..+..+.+
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-------------------- 395 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-------------------- 395 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--------------------
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--------------------
Confidence 999999988776665443223478999999999999999999999999987654433333
Q ss_pred ccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEee
Q 001352 684 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 763 (1093)
Q Consensus 684 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~ 763 (1093)
|.+.|.+++|+|+|+.|++++.||++++|+
T Consensus 396 --------------------------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 396 --------------------------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp --------------------------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred --------------------------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 555677777777777777777777777776
Q ss_pred ecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEcc-CceeEEEECC
Q 001352 764 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP 842 (1093)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~-~~~~~~~~~~ 842 (1093)
..... +....+. . ...+...+..++|+|+++.+.. .+.+.+|+.. ++..+..+.+
T Consensus 426 ~~~~~---------------~~~~~~~--~-----~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~g 481 (524)
T 2j04_B 426 AARRL---------------LHGIKNS--S-----ATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDA 481 (524)
T ss_dssp SCSST---------------TTCC-------------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------
T ss_pred chHhh---------------ccccccC--c-----cceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecC
Confidence 43210 0000000 0 0002234678899999986533 2233344433 5677888999
Q ss_pred CCCCeEEEEEcCCCC---CEEEEEeCCCeEEEEEcCC
Q 001352 843 PSPTATSLAFNPHDN---NVIAIGMDDSTILIYNARS 876 (1093)
Q Consensus 843 ~~~~i~~l~~s~~d~---~~lasg~~dg~i~iwd~~~ 876 (1093)
|...|.+++|+| ++ ..||+|+.||.|+||++.-
T Consensus 482 h~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 482 HGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred CCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence 999999999999 64 5999999999999999873
No 61
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.7e-33 Score=322.45 Aligned_cols=319 Identities=18% Similarity=0.280 Sum_probs=270.8
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ +. ++++|+.||+|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 6679887643 355579999999999999999999987554 678999999999998 34 799999999999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
+.+++.+..+.+|...|.+++++ +..+++++.||.|++||+.+++....+..+...+.++++ +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 99999999999999999999983 358999999999999999999999999999999999998 7889999886
Q ss_pred CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
++.|++||+.+++.+..+.+|. ..+.++.| ++.++++++.||.|++||+.+++.+..+..+. ..+.++.+
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~- 327 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ--SLTSGMEL- 327 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCC--SCEEEEEE-
T ss_pred --CCEEEEEECCCCcEeEEecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCc--ccEEEEEE-
Confidence 6679999999999999998887 88999999 78899999999999999999999998887653 34555554
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352 633 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 712 (1093)
Q Consensus 633 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 712 (1093)
+++++++++.||.|++||+.+++.+..+..+
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------ 358 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------------ 358 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCCEEEEECST------------------------------------------------
T ss_pred -eCCEEEEEeCCCeEEEEECCCCcEEEEEccC------------------------------------------------
Confidence 5779999999999999998765333221100
Q ss_pred ecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCce
Q 001352 713 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 792 (1093)
Q Consensus 713 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1093)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEE-----CCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001352 793 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDD 866 (1093)
Q Consensus 793 ~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~d 866 (1093)
..|...|.+++|+ +.++++++ ||.|++||+.+++.+..+ ..|...|.+++|+| ++.++|+|+.|
T Consensus 359 -------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~d 428 (445)
T 2ovr_B 359 -------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRN 428 (445)
T ss_dssp -------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSS
T ss_pred -------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccC
Confidence 0156677778774 57888887 789999999999888887 46788999999999 89999999999
Q ss_pred Ce----EEEEEcCC
Q 001352 867 ST----ILIYNARS 876 (1093)
Q Consensus 867 g~----i~iwd~~~ 876 (1093)
|+ |.+||+..
T Consensus 429 g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 429 GTEETKLLVLDFDV 442 (445)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCccEEEEEECCC
Confidence 97 99999874
No 62
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-35 Score=338.75 Aligned_cols=386 Identities=12% Similarity=0.142 Sum_probs=277.4
Q ss_pred EECCCCCEEEEEEcCCEEEEEEccCCCcccceEEe-ccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECCC---Cc-
Q 001352 404 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI-DAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVT---GS- 477 (1093)
Q Consensus 404 ~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~---~~- 477 (1093)
.|+|+++.+++++ .|+.. ++.+. .+ .+|.+.|++++|+| +++ +|++|+.||+|+|||+.+ +.
T Consensus 34 ~f~~~~~~~~~~~------~w~~~-g~~~~---~~~~~h~~~V~~~~~s~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLR-GKLIA---TLMENEPNSITSSAVSPGETP--YLITGSDQGVIKIWNLKEIIVGEV 101 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCC-CCEEE---EECTTTTSCEEEEEEECSSSC--EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred hcCCccccccccc------ccccc-ceEEe---eeccCCCCceEEEEECCCCCC--EEEEecCCceEEEeECcccccCcc
Confidence 3788888888765 37743 33333 56 78999999999999 998 899999999999999877 43
Q ss_pred --eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC---CCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 478 --RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD---SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 478 --~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
....+ +|...|.+++|++ ++.+|++++.||.|++||+. .+........+ .+..+.++|++
T Consensus 102 ~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~---------- 166 (437)
T 3gre_A 102 YSSSLTY-DCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG---------- 166 (437)
T ss_dssp CSCSEEE-ECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS----------
T ss_pred cceeeec-cCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc----------
Confidence 23344 4999999999965 66799999999999999985 32222222211 23333333321
Q ss_pred CCceeEEEEeCCCCeeeeeeecccccCCCeEEEE--EcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH--FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 630 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 630 (1093)
+ ...+.++. +++++.++++++.||.|++||+.+++.+..+..+.+...|.+++
T Consensus 167 ----------------------~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~ 221 (437)
T 3gre_A 167 ----------------------K---NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSIC 221 (437)
T ss_dssp ----------------------S---CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEE
T ss_pred ----------------------c---ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEE
Confidence 1 24455555 67889999999999999999999999999998743345799999
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001352 631 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 710 (1093)
Q Consensus 631 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 710 (1093)
|+|++++|++++.||.|++||+.++..+..+..
T Consensus 222 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------------------------------------- 254 (437)
T 3gre_A 222 IDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF----------------------------------------------- 254 (437)
T ss_dssp ECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC-----------------------------------------------
T ss_pred ECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec-----------------------------------------------
Confidence 999999999999999999999986543332210
Q ss_pred ceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCC
Q 001352 711 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 790 (1093)
Q Consensus 711 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1093)
.+...|.+++++|
T Consensus 255 ----------------------~~~~~v~~~~~~~--------------------------------------------- 267 (437)
T 3gre_A 255 ----------------------GDHAPITHVEVCQ--------------------------------------------- 267 (437)
T ss_dssp ----------------------TTCEEEEEEEECT---------------------------------------------
T ss_pred ----------------------CCCCceEEEEecc---------------------------------------------
Confidence 0112233332222
Q ss_pred ceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeE
Q 001352 791 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 869 (1093)
Q Consensus 791 ~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i 869 (1093)
+|++++.+|++++ |+.|++||+.+++.+..+.+|...+..+.|+| +++.+ .+.
T Consensus 268 -------------------~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l----~~~-- 321 (437)
T 3gre_A 268 -------------------FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP-IEKGL----EEL-- 321 (437)
T ss_dssp -------------------TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC-BCSSG----GGC--
T ss_pred -------------------ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc-ccccc----ccc--
Confidence 2446778888887 68899999999999999999999999999999 66554 111
Q ss_pred EEEEcCCcceeeeccc--ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEcc
Q 001352 870 LIYNARSSEVISKLEG--HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 947 (1093)
Q Consensus 870 ~iwd~~~~~~~~~l~~--h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 947 (1093)
.+.+ |...|++++|+ ++++|++++.|+.|++||+.+++... ...++......+....+++
T Consensus 322 ------------~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 383 (437)
T 3gre_A 322 ------------NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK-----AVISPSRFSDVFIPTQVTA 383 (437)
T ss_dssp ------------CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE-----EEECC--CCCEEEEEEEET
T ss_pred ------------eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce-----EEecccccCceEEEEEeec
Confidence 1445 99999999999 78999999999999999999876332 2222222123466677777
Q ss_pred CCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEE
Q 001352 948 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD--CRMVFTSFVDGTLSIHE 1007 (1093)
Q Consensus 948 dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~d--g~~l~t~~~dg~v~vwd 1007 (1093)
+..+++.. |+...+.... ....|...|.+++|+++ +.+|++|+.||.|+||+
T Consensus 384 ~~~~~~~~-------~~~~~~~~~~-~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 384 NLTMLLRK-------MKRTSTHSVD-DSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp TEEEEEEE-------CC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ceEEEEEe-------cccccccccC-cccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 76665544 2222333332 24568999999999998 78999999999999994
No 63
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-33 Score=308.32 Aligned_cols=291 Identities=20% Similarity=0.276 Sum_probs=253.7
Q ss_pred HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
..++|.+|.+.|++++| |++++ |++|+.||.|++||+.+++.... +..|...|.+++|+
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~~~ 68 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVCYD 68 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEEEE
T ss_pred HHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEEEC
Confidence 34568899999999999 99984 89999999999999988876654 55689999999999
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC
Q 001352 407 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 486 (1093)
Q Consensus 407 ~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~ 486 (1093)
|++++|++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|.
T Consensus 69 ~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~~ 142 (313)
T 3odt_A 69 SEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAHN 142 (313)
T ss_dssp TTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECCS
T ss_pred CCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccCC
Confidence 99999999999999999999876554555578899999999999 456 799999999999999 788888999999
Q ss_pred CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352 487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 565 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 565 (1093)
..+.++++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+.+
T Consensus 143 ~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~ 214 (313)
T 3odt_A 143 ASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHT 214 (313)
T ss_dssp SCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTT
T ss_pred CceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCc
Confidence 99999999763 457999999999999999 4445556665 788999999999999 777765 67799999999
Q ss_pred CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352 566 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 645 (1093)
Q Consensus 566 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 645 (1093)
++.+..+.+|. ..+.+++|+|++ .+++++.||.|++||+.+++.+..+..+. ..+.+++|+|+++ +++++.||
T Consensus 215 ~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~dg 287 (313)
T 3odt_A 215 GDVLRTYEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--ISIWSVDCMSNGD-IIVGSSDN 287 (313)
T ss_dssp CCEEEEEECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--SCEEEEEECTTSC-EEEEETTS
T ss_pred hhhhhhhhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--ceEEEEEEccCCC-EEEEeCCC
Confidence 99999998887 899999999998 69999999999999999999999988664 4689999999998 66799999
Q ss_pred eEEEEEcCCCceee
Q 001352 646 RIKILETPESNSVD 659 (1093)
Q Consensus 646 ~i~iw~~~~~~~~~ 659 (1093)
.|++|++.+++...
T Consensus 288 ~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 288 LVRIFSQEKSRWAS 301 (313)
T ss_dssp CEEEEESCGGGCCC
T ss_pred cEEEEeCCCCceee
Confidence 99999998775543
No 64
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.5e-34 Score=319.00 Aligned_cols=294 Identities=12% Similarity=0.188 Sum_probs=246.0
Q ss_pred hhccCCCCceeeeecCCCceEEEEEcc---CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 330 TLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 330 ~l~~h~~~V~~~~~spdg~~llasg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
.+.+|.+.|.+++|+|++++++++|+. ||.|+|||+.+++..... ..+|...|.+++|+
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v~~~~~~ 74 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPIKCGTFG 74 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCEEEEECT
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcEEEEEEc
Confidence 457899999999999999888889887 999999999998865432 22589999999999
Q ss_pred CC---CCEEEEEEcCCEEEEEEccCCC-cccceEEeccccccEEEEE------eeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352 407 PD---GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKVWDAVTG 476 (1093)
Q Consensus 407 ~d---g~~las~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~------~s~d~~~l~l~s~~~d~~i~vwd~~~~ 476 (1093)
|+ +++|++|+.|+.|++||+.+++ .+. .+.+|...|.+++ |+|+++ +|++++.|+.|++||+.++
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~ 149 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQK 149 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSC
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCC
Confidence 99 7999999999999999999886 333 6789999999995 568888 8999999999999999998
Q ss_pred c-eeEEeecCCC----CeEEeeec--ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc---CCCEEE
Q 001352 477 S-RTYSFEGHGA----PVYSLCPH--AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA---NGRRLF 546 (1093)
Q Consensus 477 ~-~~~~~~~h~~----~v~~~~~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~ 546 (1093)
+ .+..+..|.+ .+.+++|. .++++.++++++.||.|++||+++..... ...+...+.+++|+| ++.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~ 228 (357)
T 3i2n_A 150 DDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLV 228 (357)
T ss_dssp SSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEE
T ss_pred CCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEE
Confidence 7 7788876655 78888742 24577899999999999999999877644 355677999999999 999999
Q ss_pred EEecCCCCceeEEEEeCCCCeeeeeee-----cccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc--------
Q 001352 547 SCGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ-------- 612 (1093)
Q Consensus 547 ~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~~~~-------- 612 (1093)
+++. ++.|++||+.+++....+. +|. ..|.+++|+|+++ ++++++.||.|++||+.++.
T Consensus 229 ~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 229 ATSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp EEES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred EECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 9876 6679999999888776665 555 8999999999998 79999999999999998643
Q ss_pred -----------eEEEEecCCCCCCCceEEEecCCCEEE-EEECCCeEEEEEcCCCc
Q 001352 613 -----------LLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN 656 (1093)
Q Consensus 613 -----------~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iw~~~~~~ 656 (1093)
.+..+..+ ...|.+++|+|++++|+ +++.||.|++|++.+..
T Consensus 302 g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 44555544 45699999999999998 79999999999998653
No 65
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.4e-32 Score=320.74 Aligned_cols=344 Identities=15% Similarity=0.195 Sum_probs=271.5
Q ss_pred eEEecCCCCce-EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC
Q 001352 523 RVDYDAPGLGC-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH 601 (1093)
Q Consensus 523 ~~~~~~~~~~v-~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg 601 (1093)
...+.+|...+ .++.+ +++++++++. ++.|++||+.+++.+..+.+|. ..|.+++|+|++ .+++|+.||
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~----dg~i~vwd~~~~~~~~~~~~h~---~~V~~l~~~~~~-~l~s~s~dg 183 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGAD----DKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHGG-ILVSGSTDR 183 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECSTT-EEEEEETTS
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcC----CCcEEEEECCCCcEEEEEeCCC---cCEEEEEEcCCC-EEEEEeCCC
Confidence 34556666664 55544 6789999986 6679999999999999999888 999999999987 999999999
Q ss_pred cEEEEECCCCceEEEEecCCCCCCCceEEEe--cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCce
Q 001352 602 VIKIWDMNKVQLLTTIDAGGGLPENPRICFN--KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 679 (1093)
Q Consensus 602 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 679 (1093)
+|++||+.+++.+..+..+ ...|.+++|+ +++.++++++.||.|++|++.+............
T Consensus 184 ~i~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~------------- 248 (464)
T 3v7d_B 184 TVRVWDIKKGCCTHVFEGH--NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD------------- 248 (464)
T ss_dssp CEEEEETTTTEEEEEECCC--SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-------------
T ss_pred CEEEEECCCCcEEEEECCC--CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-------------
Confidence 9999999999999888765 4568999998 5789999999999999999986643321110000
Q ss_pred eeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecccee
Q 001352 680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 759 (1093)
Q Consensus 680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v 759 (1093)
...+.+.+++...+.
T Consensus 249 ----------------------------------------------------------~~~~~~~~~~~~~~~------- 263 (464)
T 3v7d_B 249 ----------------------------------------------------------YPLVFHTPEENPYFV------- 263 (464)
T ss_dssp ----------------------------------------------------------SSEEESCGGGCTTEE-------
T ss_pred ----------------------------------------------------------cceEeeccCCCeEEE-------
Confidence 000011111110000
Q ss_pred EEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEE
Q 001352 760 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTIL 838 (1093)
Q Consensus 760 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~ 838 (1093)
.. + .+|...+.++ ++++.++++++ |+.|++||+.+++.+.
T Consensus 264 ---------------------------------~~--~--~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 304 (464)
T 3v7d_B 264 ---------------------------------GV--L--RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY 304 (464)
T ss_dssp ---------------------------------EE--E--CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred ---------------------------------EE--c--cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 00 0 0266666665 68899999998 7999999999999999
Q ss_pred EECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352 839 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 839 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 918 (1093)
.+.+|...|.+++|+| ++++|++|+.||.|++||+.+++++..+.+|...|.+++|+ +++|++++.||.|++||+.+
T Consensus 305 ~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 305 ILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred EecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence 9999999999999999 89999999999999999999999999999999999999997 57999999999999999998
Q ss_pred CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEe
Q 001352 919 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 998 (1093)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~ 998 (1093)
++... ... +. ..+..++|++++++++++.|+.|++||+.+++.+.....+|...|.+++|+ ++.++++++
T Consensus 382 ~~~~~----~~~--~~---~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~ 451 (464)
T 3v7d_B 382 YSRKF----SYH--HT---NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVE 451 (464)
T ss_dssp CCEEE----EEE--CT---TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEE
T ss_pred Cceee----eec--CC---CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEE
Confidence 65322 111 11 257789999999999998899999999999999987777899999999997 445566666
Q ss_pred CCCcEEEEEc
Q 001352 999 VDGTLSIHEA 1008 (1093)
Q Consensus 999 ~dg~v~vwd~ 1008 (1093)
.||.+.+|-+
T Consensus 452 ~~g~~~i~~l 461 (464)
T 3v7d_B 452 KDGQSFLEIL 461 (464)
T ss_dssp ETTEEEEEEE
T ss_pred eCCeEEEEEe
Confidence 6776655543
No 66
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.1e-32 Score=307.23 Aligned_cols=299 Identities=21% Similarity=0.304 Sum_probs=249.5
Q ss_pred ecCCCCCeEEEEECCC-CCEEEEEEcCCEEEEEEccCCCcc--cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352 393 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 469 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~d-g~~las~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 469 (1093)
|.||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|+++ +|++++.|+.|+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~ 111 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLR 111 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccce
Confidence 8899999999999997 689999999999999999876542 23446789999999999999999 899999999999
Q ss_pred EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCC--CEEE
Q 001352 470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANG--RRLF 546 (1093)
Q Consensus 470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d~--~~l~ 546 (1093)
+|+...+........+...+..+.+.+ ++.+|++++.|+.+++||........ ....+...+..++|++++ .+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred EEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 999999999988888888888888754 55789999999999999987655433 345677889999998875 4566
Q ss_pred EEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCC
Q 001352 547 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 626 (1093)
Q Consensus 547 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 626 (1093)
+++. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++|+.||.|++||+.+++.+..+..+. .+
T Consensus 190 s~~~----d~~i~i~d~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~---~v 259 (340)
T 4aow_A 190 SCGW----DKLVKVWNLANCKLKTNHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD---II 259 (340)
T ss_dssp EEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS---CE
T ss_pred EEcC----CCEEEEEECCCCceeeEecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc---eE
Confidence 6665 6679999999999999999887 899999999999999999999999999999999998887653 48
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec
Q 001352 627 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 706 (1093)
Q Consensus 627 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~ 706 (1093)
.+++|+|++.++ +++.|+.|++||+.+...+..+.....
T Consensus 260 ~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------------------------------- 298 (340)
T 4aow_A 260 NALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVI---------------------------------------- 298 (340)
T ss_dssp EEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC------------------------------------------
T ss_pred EeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccce----------------------------------------
Confidence 999999988655 555689999999987765544432110
Q ss_pred ccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCc
Q 001352 707 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 767 (1093)
Q Consensus 707 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~ 767 (1093)
......|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus 299 ---------------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 299 ---------------------STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp --------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ---------------------eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 0011237778999999999999999999999999998653
No 67
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4e-34 Score=322.46 Aligned_cols=293 Identities=16% Similarity=0.220 Sum_probs=245.9
Q ss_pred hccCCCCceeeeecCC---CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 331 LIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 331 l~~h~~~V~~~~~spd---g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
+.+|.+.|++++|+|+ +..++++++.++.|++||+.+++.+.... ......|...|.+++|+|
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~ 79 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAWTY 79 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEecc
Confidence 4589999999999984 44456666677899999999887765321 111334788999999999
Q ss_pred C----CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECCCCceeEEe
Q 001352 408 D----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSF 482 (1093)
Q Consensus 408 d----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 482 (1093)
+ |++|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+| ++. ++++++.||.|++||+.+++.+..+
T Consensus 80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~ 154 (366)
T 3k26_A 80 DSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIF 154 (366)
T ss_dssp CTTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEe
Confidence 9 6799999999999999999987554 6778999999999999 777 8999999999999999999999988
Q ss_pred ---ecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE----------------------------ecCCCC
Q 001352 483 ---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----------------------------YDAPGL 531 (1093)
Q Consensus 483 ---~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----------------------------~~~~~~ 531 (1093)
.+|...|.+++|++ ++.+|++++.||.|++||+++.+.... ...+..
T Consensus 155 ~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 155 GGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp CSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred cccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 68999999999965 667999999999999999987544322 223788
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--------------eeeeecccccCCCeEEEEEcCC--CCEEE
Q 001352 532 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQIL 595 (1093)
Q Consensus 532 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~v~~~~~--~~~l~ 595 (1093)
.|.+++|+ ++++++++. ++.|++||+.++.. +..+.+|. ..|.+++|+|+ +++|+
T Consensus 233 ~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 233 YVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp CCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSEEE
T ss_pred eEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcEEE
Confidence 89999998 778988876 67799999988744 66666666 78999999999 99999
Q ss_pred EEeCCCcEEEEECCCCce----EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352 596 AAGDDHVIKIWDMNKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 653 (1093)
Q Consensus 596 ~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 653 (1093)
+++.||.|++||+.+++. ...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999999998764 3466666445679999999999999999999999999975
No 68
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.4e-34 Score=330.22 Aligned_cols=300 Identities=17% Similarity=0.198 Sum_probs=236.7
Q ss_pred hhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-C
Q 001352 330 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-D 408 (1093)
Q Consensus 330 ~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-d 408 (1093)
...+|.+.|+|++|+|.+..+||+|+.||+|+|||+.+++...... +.+|.+.|++++|+| +
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-----------------~~gH~~~V~~l~f~p~~ 176 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-----------------GIGAGGSITGLKFNPLN 176 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-----------------CCSSSCCCCEEEECSSC
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-----------------ccCCCCCEEEEEEeCCC
Confidence 4567899999999999654479999999999999999876543311 568999999999998 7
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 488 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~ 488 (1093)
+.+|++|+.|++|++||++++. .........+...+.+++|+|+++ +|++|+.||.|++||+. ++.+..+.+|...
T Consensus 177 ~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~ 252 (435)
T 4e54_B 177 TNQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKK 252 (435)
T ss_dssp TTEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSC
T ss_pred CCEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccce
Confidence 8999999999999999998753 222212223455688999999999 89999999999999975 5677888999999
Q ss_pred eEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352 489 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 565 (1093)
Q Consensus 489 v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 565 (1093)
|.+++|+|..+ .++++++.|+.|++||++...... ....|...|.+++|+|+|++|++++. ++.|++||+.+
T Consensus 253 v~~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~ 327 (435)
T 4e54_B 253 VTHVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQ 327 (435)
T ss_dssp EEEEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSS
T ss_pred EEeeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCC
Confidence 99999976532 588999999999999998766543 33567789999999999999999986 66799999999
Q ss_pred Ceeeeeeeccccc---CCCeEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCceEEEEecCCCCCCCceE-
Q 001352 566 GAIKRTYQGLQLQ---HNSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRI- 629 (1093)
Q Consensus 566 ~~~~~~~~~~~~~---~~~v~~v~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v- 629 (1093)
+.....+..|... ...+..+.|+|++..+++++ .++.|++||..+++.+..+..+. ...|.++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~ 406 (435)
T 4e54_B 328 WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLN 406 (435)
T ss_dssp SSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEE
T ss_pred CccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEE
Confidence 9887777665411 11233456777776666653 34679999999999988875433 3457776
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCce
Q 001352 630 CFNKNGTLLAVIANENRIKILETPESNS 657 (1093)
Q Consensus 630 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 657 (1093)
+|+|+|++|++|+ |+.|+||++.+++.
T Consensus 407 ~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 407 EFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 6999999999876 78999999987753
No 69
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.7e-33 Score=313.34 Aligned_cols=203 Identities=13% Similarity=0.127 Sum_probs=172.3
Q ss_pred CCCCeeEEEEccCCCEEEEEe---CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352 802 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 878 (1093)
Q Consensus 802 ~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~ 878 (1093)
+...+.+++|||||+++++++ |++|+|||+.+++.+..+. |...|.+++|+| |+++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556788999999999988765 6899999999999998886 778899999999 99999999855 57777777776
Q ss_pred eee--ecccccCCeEEEEEeCCCCEEEEEeCCC----cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEE
Q 001352 879 VIS--KLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 952 (1093)
Q Consensus 879 ~~~--~l~~h~~~V~~l~~s~dg~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 952 (1093)
.+. ...+|...|.+++|+||++++++++.|+ .+++|++......... .....++.. .|++++|||||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~---~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SKQVTNRFK---GITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EEEEESSCS---CEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-eeeecCCCC---CeEeEEECCCCCce
Confidence 553 4567999999999999999999999887 6888998775533222 222334443 79999999999999
Q ss_pred EE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352 953 LL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus 953 ~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
|+ +.|++|+|||+.+++++..+..+|...|++++|||||++||+||.|++|+|||++..
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99 578999999999999999888899999999999999999999999999999999754
No 70
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.6e-33 Score=319.93 Aligned_cols=348 Identities=11% Similarity=0.123 Sum_probs=242.5
Q ss_pred eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEEEec-----------CCCC
Q 001352 556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGL 623 (1093)
Q Consensus 556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~ 623 (1093)
..+++|+...++....+.+|. ..|.+++|+| +++++++++.||.|++||+.+++....+.. ..+.
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred CcceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 347788888888888888877 9999999999 999999999999999999998766544431 1244
Q ss_pred CCCceEEEec-CCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccc
Q 001352 624 PENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 702 (1093)
Q Consensus 624 ~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 702 (1093)
..|.+++|+| ++.++++++.||.|++|++.++.....+.
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------------------------- 139 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---------------------------------------- 139 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----------------------------------------
Confidence 5689999999 77899999999999999987653221110
Q ss_pred eeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCc
Q 001352 703 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 782 (1093)
Q Consensus 703 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 782 (1093)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCceeeccCCCCCCCCCeeEEEEcc---CCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCC
Q 001352 783 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 858 (1093)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~ 858 (1093)
+...+.++++++ ++.++++++ ++.|++||+.+++.+..+..|...|.+++|+| ++.
T Consensus 140 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 199 (408)
T 4a11_B 140 -------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYD 199 (408)
T ss_dssp -------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCT
T ss_pred -------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCC
Confidence 222334444544 445777776 68999999999999999999999999999999 666
Q ss_pred -EEEEEeCCCeEEEEEcCCcc-eeeec---------------ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce
Q 001352 859 -VIAIGMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 921 (1093)
Q Consensus 859 -~lasg~~dg~i~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~ 921 (1093)
+|++|+.||.|++||+.++. .+..+ .+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence 69999999999999998765 33333 57999999999999999999999999999999998664
Q ss_pred eeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCC
Q 001352 922 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1001 (1093)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg 1001 (1093)
.............. ...........+.+++++.++.|++||+.+++.+.. +.+|...|.+++|+|||++|++++.||
T Consensus 280 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg 356 (408)
T 4a11_B 280 TLVNYGKVCNNSKK--GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDC 356 (408)
T ss_dssp CCCCCCCCCCCCSS--CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred ceeccccccccccc--cceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCC
Confidence 32111111111111 122333444456666668999999999999999887 568999999999999999999999999
Q ss_pred cEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352 1002 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 1002 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
.|++||+.+++.+....... ....+.|.+...+...+.++.+++|+.+
T Consensus 357 ~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 357 NILAWVPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CEEEEEECC----------------------------------------------------
T ss_pred eEEEEeCCCCCccCCCCceE-------------eccccccccceeecccCccCceeecCCc
Confidence 99999999998775443111 1122333345677888899999999864
No 71
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.1e-33 Score=314.20 Aligned_cols=292 Identities=12% Similarity=0.054 Sum_probs=246.6
Q ss_pred hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCc--eeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
+..|.+.|++++|+|||+ +|++|+.|+.|++||+.+++ .+.. +.+|...|.+++|+|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPD 63 (372)
T ss_dssp EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETT
T ss_pred ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCC
Confidence 456889999999999998 58999999999999999886 4433 6689999999999999
Q ss_pred CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce---eEE-eec
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYS-FEG 484 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~---~~~-~~~ 484 (1093)
+++|++++.|+.|++||+.+++... ...+.+|...|.+++|+|+++ ++++++.|+.|++||+.+++. ... ...
T Consensus 64 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~ 140 (372)
T 1k8k_C 64 SNRIVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKP 140 (372)
T ss_dssp TTEEEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence 9999999999999999998876332 224567999999999999999 899999999999999998873 333 367
Q ss_pred CCCCeEEeeecccCCccEEEEEecCCeEEEEEcC------------------CCCceEEecCCCCceEEEEEccCCCEEE
Q 001352 485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLF 546 (1093)
Q Consensus 485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~------------------~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 546 (1093)
|...|.+++|++ ++.++++++.||.|++||+. .......+..+...+.+++|+|++++++
T Consensus 141 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 141 IRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA 218 (372)
T ss_dssp CCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred cCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence 899999999965 66799999999999999954 5566777778888999999999999999
Q ss_pred EEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceEEE--------
Q 001352 547 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLLTT-------- 616 (1093)
Q Consensus 547 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~-------- 616 (1093)
+++. ++.|++||+.+++.+..+..+. ..+.+++|+|++.+++++ .|+.|++|++.+ ++....
T Consensus 219 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 219 WVSH----DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp EEET----TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred EEeC----CCEEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9986 6779999999999999998877 899999999999877777 999999999987 431100
Q ss_pred ----------------------------Eec-CCCCCCCceEEEe-cCC---CEEEEEECCCeEEEEEcCCC
Q 001352 617 ----------------------------IDA-GGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES 655 (1093)
Q Consensus 617 ----------------------------~~~-~~~~~~v~~v~~s-~~~---~~l~~~~~dg~i~iw~~~~~ 655 (1093)
... .++...|.+++|. ++| .+|++++.||.|++|++.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred chhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 111 1445679999866 566 99999999999999998754
No 72
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-32 Score=307.65 Aligned_cols=289 Identities=12% Similarity=0.146 Sum_probs=259.1
Q ss_pred eeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEE
Q 001352 391 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 470 (1093)
Q Consensus 391 ~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~v 470 (1093)
..+.+|...|++++|+|++++|++++.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i 100 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL 100 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence 3478999999999999999999999999999999999987554 6789999999999999999 8999999999999
Q ss_pred EECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecC-----CeEEEEEcCCCCc-----------eEEecCCCC--c
Q 001352 471 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGA-----------RVDYDAPGL--G 532 (1093)
Q Consensus 471 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~-----------~~~~~~~~~--~ 532 (1093)
||+.+++.+..+. +...|.+++|++ ++.++++++.+ |.|++||+..... ...+..+.. .
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 9999999999988 889999999965 66899999999 9999999976542 233344444 8
Q ss_pred eEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001352 533 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 611 (1093)
Q Consensus 533 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~ 611 (1093)
+.+++|+|+++++++++. ++.|++||+.+ +..+..+..|. ..|.+++|+|++++|++++.||.|++||+.++
T Consensus 178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 999999999999999876 67799999998 78888888877 89999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCCCceEEEecCCCEEEEEECCC--------------eEEEEEcCCCceeeecccccccceeeeecCCC
Q 001352 612 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 677 (1093)
Q Consensus 612 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~ 677 (1093)
+.+..+... ..+..++|+|+++++++++.++ .+++|+..+++.+..+.+|...|.+++|+
T Consensus 251 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s--- 324 (369)
T 3zwl_B 251 QVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS--- 324 (369)
T ss_dssp CEEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC---
T ss_pred ceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC---
Confidence 999888743 4589999999999999999988 89999999999999999999999999986
Q ss_pred ceeeeeccCCceEecCCCCCCCccceeecccccceecceeec
Q 001352 678 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 719 (1093)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~ 719 (1093)
|+++++++++.|+.+++|++...
T Consensus 325 -------------------~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 325 -------------------PQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp -------------------TTSSEEEEEETTSEEEEEEECHH
T ss_pred -------------------CCCCEEEEEcCCCeEEEEECccc
Confidence 78889999999999999998743
No 73
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.5e-33 Score=323.09 Aligned_cols=302 Identities=12% Similarity=0.117 Sum_probs=232.0
Q ss_pred eeeecccccCCCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-CCCEEEEEECCCeE
Q 001352 570 RTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRI 647 (1093)
Q Consensus 570 ~~~~~~~~~~~~v~~v~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i 647 (1093)
....+|. ..|++++|+|. ++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++++|++++.||+|
T Consensus 113 ~~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 113 QKAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp CEEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred ccCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 3444454 78999999994 5789999999999999999888777776666677899999998 78999999999999
Q ss_pred EEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcccccc
Q 001352 648 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 727 (1093)
Q Consensus 648 ~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 727 (1093)
++||+.+..... +
T Consensus 190 ~iwd~~~~~~~~-~------------------------------------------------------------------ 202 (435)
T 4e54_B 190 RLQDFKGNILRV-F------------------------------------------------------------------ 202 (435)
T ss_dssp EEEETTSCEEEE-E------------------------------------------------------------------
T ss_pred EEeeccCCceeE-E------------------------------------------------------------------
Confidence 999986431100 0
Q ss_pred ccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCee
Q 001352 728 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 807 (1093)
Q Consensus 728 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 807 (1093)
... + .+...+.
T Consensus 203 ---------------~~~----------~--------------------------------------------~~~~~~~ 213 (435)
T 4e54_B 203 ---------------ASS----------D--------------------------------------------TINIWFC 213 (435)
T ss_dssp ---------------ECC----------S--------------------------------------------SCSCCCC
T ss_pred ---------------ecc----------C--------------------------------------------CCCccEE
Confidence 000 0 1344567
Q ss_pred EEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee---c
Q 001352 808 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK---L 883 (1093)
Q Consensus 808 ~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~---l 883 (1093)
+++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..+|++|+.|+.|++||+.+++.... .
T Consensus 214 ~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~ 292 (435)
T 4e54_B 214 SLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS 292 (435)
T ss_dssp CEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC
T ss_pred EEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEe
Confidence 889999999999998 6999999986 5667788899999999999995556899999999999999988765433 3
Q ss_pred ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE--------
Q 001352 884 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-------- 955 (1093)
Q Consensus 884 ~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-------- 955 (1093)
.+|...|++++|+|||++|++++.||.|+|||+.+++............ .....+..+.|+|++..++++
T Consensus 293 ~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 370 (435)
T 4e54_B 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH--FQHLTPIKAAWHPRYNLIVVGRYPDPNFK 370 (435)
T ss_dssp CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC--CSSSCCCBCEECSSSSCEEEECCCCTTSC
T ss_pred eeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc--cccceeEEEEEcCCCCEEEEEEcCCCCeE
Confidence 5799999999999999999999999999999999876443221111110 000123445666666666653
Q ss_pred -----eCCeEEEEEcCCcceeeeeecCCCCCEEEE-EEccCCCEEEEEeCCCcEEEEEcCCCceE
Q 001352 956 -----HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1014 (1093)
Q Consensus 956 -----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~-~fs~dg~~l~t~~~dg~v~vwd~~~~~~~ 1014 (1093)
.++.|++||..+++.+..+..+|...|.++ +|+|||.+|++|+ |++|+||++.+++..
T Consensus 371 ~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 371 SCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 235799999999999998888898899887 6999999999875 889999999988654
No 74
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.1e-33 Score=313.32 Aligned_cols=307 Identities=16% Similarity=0.168 Sum_probs=243.3
Q ss_pred EEeCCCCeeeeeeecccccCCCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-CCCE
Q 001352 560 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTL 637 (1093)
Q Consensus 560 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~ 637 (1093)
+|+.........+.+|. ..|.+++|+|++ +++++|+.||.|++||+.+++....+...++...|.+++|+| ++++
T Consensus 57 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp HHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred cccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 34455666777777777 899999999998 899999999999999999999888887655567799999999 7899
Q ss_pred EEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceeccee
Q 001352 638 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 717 (1093)
Q Consensus 638 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 717 (1093)
|++++.|+.|++||+.+. .+..+..
T Consensus 134 l~s~~~d~~i~iwd~~~~-~~~~~~~------------------------------------------------------ 158 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGS-VIQVFAK------------------------------------------------------ 158 (383)
T ss_dssp EEEEETTTEEEEEETTSC-EEEEEEC------------------------------------------------------
T ss_pred EEEEeCCCEEEEEECCCC-ceEEEec------------------------------------------------------
Confidence 999999999999998732 1100000
Q ss_pred eccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccC
Q 001352 718 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 797 (1093)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1093)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCC-EEEEEeCCCeEEEEEcC
Q 001352 798 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNAR 875 (1093)
Q Consensus 798 ~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~dg~i~iwd~~ 875 (1093)
..++...|.+++|+|++++|++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.||.|++||+.
T Consensus 159 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~ 235 (383)
T 3ei3_B 159 -TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLR 235 (383)
T ss_dssp -CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGG
T ss_pred -cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCC
Confidence 001556788899999999999988 689999998 5778888999999999999999 777 99999999999999999
Q ss_pred C----cceeeecccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeec--CCCccc-------CCCCce
Q 001352 876 S----SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMT-------LAPSET 941 (1093)
Q Consensus 876 ~----~~~~~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~v~ 941 (1093)
+ +.++..+ +|...|.+++|+| ++++|++++.|+.|++||+.+++......... ...+.. ....+.
T Consensus 236 ~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 314 (383)
T 3ei3_B 236 NIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI 314 (383)
T ss_dssp GCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred CCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence 8 5566666 6999999999999 99999999999999999999866433211110 001111 002334
Q ss_pred EEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001352 942 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1010 (1093)
Q Consensus 942 ~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~ 1010 (1093)
.++|+|||++ ..+.|+.|++||+.+++++..+... |...+..++|+|||++|++++ ||.|++||+.+
T Consensus 315 ~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 315 VAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 4666666666 2357899999999999998885533 467788889999999999997 99999999975
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-32 Score=311.36 Aligned_cols=296 Identities=17% Similarity=0.228 Sum_probs=245.4
Q ss_pred ccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCE
Q 001352 332 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 411 (1093)
Q Consensus 332 ~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~ 411 (1093)
.+|.+.+.+..+++++.. +++++.||.|++||+.+++..... ...|...|.+++|+|++++
T Consensus 88 ~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~~~~ 148 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHDGSF 148 (401)
T ss_dssp TTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTTSSE
T ss_pred CCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCCCCE
Confidence 367666555444444454 566778999999999999877542 2238899999999999999
Q ss_pred EEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC-CCceeEEeecCCCCeE
Q 001352 412 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGAPVY 490 (1093)
Q Consensus 412 las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~-~~~~~~~~~~h~~~v~ 490 (1093)
|++|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ ++++++.||.|++||+. .+..+..+.+|...|.
T Consensus 149 l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 221 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC 221 (401)
T ss_dssp EEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred EEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCee
Confidence 9999999999999999987555 677999999999994 45 79999999999999999 5677888999999999
Q ss_pred EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352 491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 570 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 570 (1093)
+++|++ ++.+|++++.||.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+.
T Consensus 222 ~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~ 298 (401)
T 4aez_A 222 GLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVN 298 (401)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEE
T ss_pred EEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEE
Confidence 999966 6789999999999999999999888899899999999999998765555432 1237789999999999988
Q ss_pred eeecccccCCCeEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352 571 TYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 648 (1093)
Q Consensus 571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 648 (1093)
.+..+ ..+.+++|+|++++++++ +.||.|++||+.+++.........+...|.+++|+|++++|++++.||.|+
T Consensus 299 ~~~~~----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~ 374 (401)
T 4aez_A 299 TVDAG----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLK 374 (401)
T ss_dssp EEECS----SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEE
T ss_pred EEeCC----CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 88642 589999999999999994 489999999999987766654444456799999999999999999999999
Q ss_pred EEEcCCCceeee
Q 001352 649 ILETPESNSVDA 660 (1093)
Q Consensus 649 iw~~~~~~~~~~ 660 (1093)
+|++.+++.+..
T Consensus 375 iw~~~~~~~~~~ 386 (401)
T 4aez_A 375 FWRVYDGDHVKR 386 (401)
T ss_dssp EEECCC------
T ss_pred EEECCCCccccc
Confidence 999998866544
No 76
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.8e-32 Score=310.20 Aligned_cols=289 Identities=16% Similarity=0.256 Sum_probs=244.1
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 416 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~ 416 (1093)
..+.++||+++ +||+|. |++|+|||+.+|+.+.... +.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence 57889999875 588875 8999999999998876422 557889999999999999999999
Q ss_pred cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-ceeEEeecCCCCeEEeeec
Q 001352 417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH 495 (1093)
Q Consensus 417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~ 495 (1093)
.|++|+|||+.+++.++ .+.+|...+.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999987655 678999999998886 45 7999999999999998865 5567889999999999985
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEE-EEEecCCCCceeEEEEeCCCCeeee
Q 001352 496 AKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR 570 (1093)
Q Consensus 496 ~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l-~~~~~~~~~~~~i~iwd~~~~~~~~ 570 (1093)
+ ++.++++++.||.+++|+....+. ......+...|.+++|+|++..+ ++++. ..++.|++||+.+++...
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 4 668999999999999999987653 45667788899999999976654 44433 237789999999999998
Q ss_pred eeecccccCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352 571 TYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 648 (1093)
Q Consensus 571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 648 (1093)
.+..+. .+.++.|+|+++.+++++ .|+.|+|||+.+++++..+..| ...|.+++|+|+|++|++++.|++|+
T Consensus 316 ~~~~~~----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvr 389 (420)
T 4gga_A 316 AVDAHS----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLR 389 (420)
T ss_dssp EEECSS----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEE
T ss_pred eecccc----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEE
Confidence 887654 789999999999998865 7999999999999999999866 45699999999999999999999999
Q ss_pred EEEcCCCceeeecc
Q 001352 649 ILETPESNSVDAAG 662 (1093)
Q Consensus 649 iw~~~~~~~~~~~~ 662 (1093)
+|++.+..+.....
T Consensus 390 iWdv~~~~~~~~~~ 403 (420)
T 4gga_A 390 LWRCFELDPARRRE 403 (420)
T ss_dssp EECCSCSSCC----
T ss_pred EEECCCCCccchhh
Confidence 99998765544443
No 77
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.2e-33 Score=311.84 Aligned_cols=298 Identities=11% Similarity=0.124 Sum_probs=230.6
Q ss_pred CceeeeecCCCceEEEEEccC-------CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352 337 SPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 409 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg 409 (1093)
+|+|++|+|||+ +||+|+.+ +.|++|++..+.......+ .......+.+|...|.+++++ +
T Consensus 16 PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~---------~~~~~~~l~~~~~~v~s~~~~--~ 83 (365)
T 4h5i_A 16 PAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF---------HILSEFALEDNDDSPTAIDAS--K 83 (365)
T ss_dssp CEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE---------EEEEEEECCTTSCCCCEEEEE--T
T ss_pred CEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeee---------eeeeEEEccCCCCceEEEEeC--C
Confidence 899999999998 68888653 3599999987654321111 111223377899999888764 5
Q ss_pred CEEEEE-----------EcCCEEEEEEccCCCcccc-eEE-----eccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 410 SLLGVA-----------YSKHIVQLYAYHGGSDARQ-QLE-----IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 410 ~~las~-----------~~d~~i~iwd~~~~~~~~~-~~~-----~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
..+++| +.|+++++|++.++..... ... ...+...+.+++|||||+.+.+++++.|++|+|||
T Consensus 84 ~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd 163 (365)
T 4h5i_A 84 GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIID 163 (365)
T ss_dssp TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEE
T ss_pred CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeE
Confidence 566665 3567899999887643221 111 12345568999999999965556777899999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE--ecCCCCceEEEEEccCCCEEEEEec
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCGT 550 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~~~~~ 550 (1093)
+.+++++..+. |...|.+++|+| ||.++++++.+ .+++|+..++..... ...+...+.+++|+|+++++++++.
T Consensus 164 ~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~ 239 (365)
T 4h5i_A 164 PSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASL 239 (365)
T ss_dssp TTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEE
T ss_pred CCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEec
Confidence 99999999886 778899999954 77899998855 566666666665543 3456678999999999999999988
Q ss_pred CCCCceeEEEEeCCCCee----eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE-ecCCCCCC
Q 001352 551 SKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPE 625 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~ 625 (1093)
++.....+++|+...+.. ...+.+|. ..|.+++|+|+|++|++|+.|++|+|||+.+++++..+ ..| ...
T Consensus 240 d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~~ 314 (365)
T 4h5i_A 240 KKGKGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SFA 314 (365)
T ss_dssp SSSCCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SSC
T ss_pred CCcceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cCC
Confidence 766566789999877654 23455555 88999999999999999999999999999999998876 444 456
Q ss_pred CceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 626 NPRICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 626 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
|++++|+|||++||+++.|++|+||++...
T Consensus 315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 315 ITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999999999754
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2e-32 Score=297.54 Aligned_cols=250 Identities=13% Similarity=0.167 Sum_probs=210.5
Q ss_pred hhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCC--ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 330 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 330 ~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
.+.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++ +.+.. +.+|.++|.+++|+|
T Consensus 4 ~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~-------------------l~gH~~~V~~v~~s~ 63 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDWAH 63 (297)
T ss_dssp ECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEE-------------------ECCCSSCEEEEEECC
T ss_pred eccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEE-------------------EccccCCeEEEEecC
Confidence 4679999999999999999 5999999999999999754 33333 779999999999987
Q ss_pred C--CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEEEECCCCce--eEE
Q 001352 408 D--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR--TYS 481 (1093)
Q Consensus 408 d--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~~--~~~ 481 (1093)
+ +++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||+.++.. ...
T Consensus 64 ~~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~ 140 (297)
T 2pm7_B 64 PKFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPII 140 (297)
T ss_dssp GGGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEE
T ss_pred CCcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeee
Confidence 4 899999999999999999987522 23357789999999999998 77 899999999999999987642 467
Q ss_pred eecCCCCeEEeeecccC-----------CccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCceEEEEEccCC---C
Q 001352 482 FEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG---R 543 (1093)
Q Consensus 482 ~~~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~d~---~ 543 (1093)
+.+|...|.+++|+|.. ++.+|++|+.|++|++||++... ....+.+|...|.+++|+|++ .
T Consensus 141 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~ 220 (297)
T 2pm7_B 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (297)
T ss_dssp EECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCce
Confidence 78999999999998752 35799999999999999998766 445678899999999999995 7
Q ss_pred EEEEEecCCCCceeEEEEeCCCCee---eeee--ecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001352 544 RLFSCGTSKEGESFLVEWNESEGAI---KRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 609 (1093)
Q Consensus 544 ~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~ 609 (1093)
+|++++. ++.|++||+.++.. ...+ ..+ ...|.+++|+|++++|++++.||.|++|+..
T Consensus 221 ~las~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 221 YMASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKF---PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEET----TSCEEEEEESSTTSCCEEEESSSSCC---SSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEEC----CCcEEEEEeCCCCCccceeeeecccC---CCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 8999886 66799999887431 1222 233 3789999999999999999999999999976
No 79
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.7e-34 Score=322.61 Aligned_cols=288 Identities=12% Similarity=0.059 Sum_probs=225.6
Q ss_pred ccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCC--ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352 332 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 409 (1093)
Q Consensus 332 ~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg 409 (1093)
..|.+.|++++|+|||+ +||+|+.|+.|+|||+.++ +.+.. +.+|...|.+++|+|++
T Consensus 8 ~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~ 67 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPKS 67 (377)
T ss_dssp EECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTTT
T ss_pred ecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCCC
Confidence 34667999999999998 5899999999999999987 33332 67899999999999999
Q ss_pred CEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc---eeEEeec-C
Q 001352 410 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG-H 485 (1093)
Q Consensus 410 ~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~---~~~~~~~-h 485 (1093)
++|++++.|++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++ ....+.+ |
T Consensus 68 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h 145 (377)
T 3dwl_C 68 NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPL 145 (377)
T ss_dssp CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSC
T ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeeccc
Confidence 9999999999999999999873444456778999999999999999 79999999999999999987 4778887 9
Q ss_pred CCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC------------------CceEEecCCCCceEEEEEccCCCEEEE
Q 001352 486 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL------------------GARVDYDAPGLGCTRMAYSANGRRLFS 547 (1093)
Q Consensus 486 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~------------------~~~~~~~~~~~~v~~~~~s~d~~~l~~ 547 (1093)
...|.+++|++ ++.+|++++.||.|++||+... .....+ .+...|.+++|+|++++|++
T Consensus 146 ~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~ 222 (377)
T 3dwl_C 146 RSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAY 222 (377)
T ss_dssp CSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEE
T ss_pred CCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEE
Confidence 99999999965 6689999999999999998632 233344 77888999999999999999
Q ss_pred EecCCCCceeEEEEeCCCCee----eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------
Q 001352 548 CGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----------- 612 (1093)
Q Consensus 548 ~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~----------- 612 (1093)
++. ++.|++||+.+++. +..+.+|. ..|.+++|+|+++++++++.++.+ +|+.....
T Consensus 223 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 294 (377)
T 3dwl_C 223 AGH----DSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGT 294 (377)
T ss_dssp EET----TTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCC
T ss_pred EeC----CCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccc
Confidence 986 67799999999987 77888877 899999999999988888766655 66654211
Q ss_pred ----------------------------eEEEEec-----------CCCCCCCceEEEecC-CC---EEEEEECCCeEEE
Q 001352 613 ----------------------------LLTTIDA-----------GGGLPENPRICFNKN-GT---LLAVIANENRIKI 649 (1093)
Q Consensus 613 ----------------------------~~~~~~~-----------~~~~~~v~~v~~s~~-~~---~l~~~~~dg~i~i 649 (1093)
....... ..+...|.++++.+. +. .+++++.||.|++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~i 374 (377)
T 3dwl_C 295 SKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVL 374 (377)
T ss_dssp CCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred cccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEE
Confidence 0000000 014456888886653 33 6999999999999
Q ss_pred EEc
Q 001352 650 LET 652 (1093)
Q Consensus 650 w~~ 652 (1093)
||+
T Consensus 375 Wdl 377 (377)
T 3dwl_C 375 WTL 377 (377)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 80
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.4e-32 Score=311.74 Aligned_cols=357 Identities=17% Similarity=0.216 Sum_probs=239.9
Q ss_pred cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-CCCEEEEEEcCCEEEEEEccCCCcccc
Q 001352 356 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQ 434 (1093)
Q Consensus 356 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-dg~~las~~~d~~i~iwd~~~~~~~~~ 434 (1093)
.++.+++|++.+++.... +.+|.+.|.+++|+| ++++||+|+.||.|++||+.+++....
T Consensus 21 ~~~~~~v~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 81 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDV-------------------ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY 81 (408)
T ss_dssp HHHHHHHHTEEECTTEEE-------------------CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC
T ss_pred ccCcceeeccccCcceee-------------------eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence 346677888777665543 678999999999999 999999999999999999998876553
Q ss_pred eEEe----------ccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEE
Q 001352 435 QLEI----------DAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 503 (1093)
Q Consensus 435 ~~~~----------~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 503 (1093)
.... .+|...|.+++|+| ++. ++++++.|+.|++||+.+++.+..+. +...+.++++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~----- 153 (408)
T 4a11_B 82 YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVS----- 153 (408)
T ss_dssp EEECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSC-----
T ss_pred EeccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCC-----
Confidence 3211 25999999999999 555 79999999999999999998887776 66667766664432
Q ss_pred EEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeE
Q 001352 504 FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVS 583 (1093)
Q Consensus 504 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 583 (1093)
+++.++++++. ++.|++||+.+++.+..+.+|. ..|.
T Consensus 154 ------------------------------------~~~~~~~~~~~----~~~v~~~d~~~~~~~~~~~~~~---~~v~ 190 (408)
T 4a11_B 154 ------------------------------------TKHCLVAVGTR----GPKVQLCDLKSGSCSHILQGHR---QEIL 190 (408)
T ss_dssp ------------------------------------SSCCEEEEEES----SSSEEEEESSSSCCCEEECCCC---SCEE
T ss_pred ------------------------------------CCCcEEEEEcC----CCeEEEEeCCCcceeeeecCCC---CcEE
Confidence 13334444443 3346666666666666666666 8899
Q ss_pred EEEEcCCCCE-EEEEeCCCcEEEEECCCCc-eEEEEec-------------CCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352 584 VVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQ-LLTTIDA-------------GGGLPENPRICFNKNGTLLAVIANENRIK 648 (1093)
Q Consensus 584 ~v~~~~~~~~-l~~~~~dg~i~iwd~~~~~-~~~~~~~-------------~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 648 (1093)
+++|+|++++ +++++.||.|++||+.++. .+..+.. ..+...|.+++|+|++++|++++.||.|+
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 270 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence 9999999985 8899999999999998776 3444321 23345689999999999999999999999
Q ss_pred EEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccc
Q 001352 649 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 728 (1093)
Q Consensus 649 iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~ 728 (1093)
+|++.++........+....
T Consensus 271 vwd~~~~~~~~~~~~~~~~~------------------------------------------------------------ 290 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNN------------------------------------------------------------ 290 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCC------------------------------------------------------------
T ss_pred EEECCCCccceecccccccc------------------------------------------------------------
Confidence 99998764322111000000
Q ss_pred cCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeE
Q 001352 729 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 808 (1093)
Q Consensus 729 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 808 (1093)
........
T Consensus 291 ------------------------------------------------------------------------~~~~~~~~ 298 (408)
T 4a11_B 291 ------------------------------------------------------------------------SKKGLKFT 298 (408)
T ss_dssp ------------------------------------------------------------------------CSSCCCCE
T ss_pred ------------------------------------------------------------------------ccccceeE
Confidence 00001111
Q ss_pred EEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccC
Q 001352 809 FALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 888 (1093)
Q Consensus 809 l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~ 888 (1093)
......+.+++++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+..
T Consensus 299 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 377 (408)
T 4a11_B 299 VSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTT 377 (408)
T ss_dssp ECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC------------
T ss_pred EecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEe
Confidence 2223345566666689999999999999999999999999999999 899999999999999999999887765554332
Q ss_pred CeEEEEEeC-CCCEEEEEeCCCcEEEEeCCC
Q 001352 889 RVTGLVFSD-ALNILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 889 ~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~ 918 (1093)
. ..+.+ +...+.+.+.++.+++|+...
T Consensus 378 ~---~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 378 K---SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp -------------------------------
T ss_pred c---cccccccceeecccCccCceeecCCcc
Confidence 2 22333 334566777899999998754
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=9.6e-32 Score=329.63 Aligned_cols=211 Identities=18% Similarity=0.303 Sum_probs=183.6
Q ss_pred EeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-----ceeEEeecCCCCeEEeeecccCCccEEEEEecCCe
Q 001352 437 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 511 (1093)
Q Consensus 437 ~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 511 (1093)
.+.+|.+.|++++|++++.. +|+||+.|++|++||+.++ .....+.+|...|.+++|++ ++.+|++|+.||+
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSWDGE 453 (694)
T ss_dssp EEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSE
T ss_pred hcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeCCCc
Confidence 57799999999999998654 8999999999999998763 45678899999999999955 6789999999999
Q ss_pred EEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCC
Q 001352 512 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 591 (1093)
Q Consensus 512 i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~ 591 (1093)
|++||+.++.....+..|...|.+++|+|++++|++++. ++.|++||...............|...|.+++|+|++
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 999999999888899999999999999999999999987 6679999987665444433333344889999999986
Q ss_pred --CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCc
Q 001352 592 --DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 656 (1093)
Q Consensus 592 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 656 (1093)
..+++++.|++|++||+.+++....+..|. ..|.+++|+|++++|++++.||.|++||+.+++
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 579999999999999999999988887664 469999999999999999999999999987653
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.3e-32 Score=310.57 Aligned_cols=296 Identities=16% Similarity=0.151 Sum_probs=250.7
Q ss_pred eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC------ceEEecCCCCceEEEEEccC----C---CEE
Q 001352 479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAPGLGCTRMAYSAN----G---RRL 545 (1093)
Q Consensus 479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~s~d----~---~~l 545 (1093)
...+.+|...|++++|++ .+|++++.||.|++||+.... ....+..+...|.+++|+|+ + ++|
T Consensus 9 ~~~~~~h~~~i~~~~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEESSCSSSCEEEEEECS----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 456789999999999965 599999999999999999988 67788889999999999999 9 999
Q ss_pred EEEecCCCCceeEEEEeCCCCee-----eeeeeccccc--CCCeEEEEEc----CCCCE-EEEEeCCCcEEEEECCC---
Q 001352 546 FSCGTSKEGESFLVEWNESEGAI-----KRTYQGLQLQ--HNSVSVVHFD----TAKDQ-ILAAGDDHVIKIWDMNK--- 610 (1093)
Q Consensus 546 ~~~~~~~~~~~~i~iwd~~~~~~-----~~~~~~~~~~--~~~v~~v~~~----~~~~~-l~~~~~dg~i~iwd~~~--- 610 (1093)
++++. ++.|++||+.+++. ...+..|..+ ...|.+++|+ |++++ +++++.||.|++||+.+
T Consensus 85 ~s~~~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 85 ATTSF----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEET----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEEcC----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99886 66799999998887 7777777322 3789999999 99999 99999999999999998
Q ss_pred ---CceEE-----EEec-----CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCC
Q 001352 611 ---VQLLT-----TIDA-----GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 677 (1093)
Q Consensus 611 ---~~~~~-----~~~~-----~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~ 677 (1093)
++.+. .+.. ..+...+.+++|+|++ ++++++.||.|++||+.+.+.+..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------- 225 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES-------------- 225 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC--------------
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec--------------
Confidence 66665 6643 3344568999999999 999999999999999875422211100
Q ss_pred ceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccc
Q 001352 678 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 757 (1093)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 757 (1093)
T Consensus 226 -------------------------------------------------------------------------------- 225 (397)
T 1sq9_A 226 -------------------------------------------------------------------------------- 225 (397)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCC---CCCeeEEEEccCCCEEEEEe-C---CeEEEEE
Q 001352 758 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS---QEAVPCFALSKNDAYLFSAS-G---GVISLYI 830 (1093)
Q Consensus 758 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~l~~s~dg~~la~~~-d---g~i~iwd 830 (1093)
. .+| ...+.+++|+|++++|++++ + +.|++||
T Consensus 226 ---------------------------------------~--~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d 264 (397)
T 1sq9_A 226 ---------------------------------------Q--HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE 264 (397)
T ss_dssp ---------------------------------------C--C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------------------c--ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEE
Confidence 0 014 66788999999999999887 6 7999999
Q ss_pred ccCceeEEEECC-------------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecc------cc-----
Q 001352 831 VMTFKTILTIMP-------------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE------GH----- 886 (1093)
Q Consensus 831 ~~~~~~~~~~~~-------------~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~------~h----- 886 (1093)
+.+++.+..+.. |...|.+++|+| ++++|++++.||.|++||+.+++.+..+. +|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
T 1sq9_A 265 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL 343 (397)
T ss_dssp TTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred CCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh
Confidence 999999999988 999999999999 89999999999999999999999999998 88
Q ss_pred ----------cCCeEEEEEeCCC----------CEEEEEeCCCcEEEEeCCCC
Q 001352 887 ----------SKRVTGLVFSDAL----------NILVSSGGDAQIFVWDVDGW 919 (1093)
Q Consensus 887 ----------~~~V~~l~~s~dg----------~~l~s~s~dg~i~iwd~~~~ 919 (1093)
...|++++|+|++ ++|++++.||.|++|++.++
T Consensus 344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999999875
No 83
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-33 Score=311.25 Aligned_cols=314 Identities=11% Similarity=0.034 Sum_probs=246.0
Q ss_pred CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352 335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 414 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las 414 (1093)
...|.+++|||||+ ++|+++.|++|+ |...++. +.+|...|.+++|+|+|
T Consensus 15 ~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg----- 64 (588)
T 2j04_A 15 EDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE----- 64 (588)
T ss_dssp SSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC-----
T ss_pred hccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC-----
Confidence 45999999999998 699999999999 7555542 45799999999999999
Q ss_pred EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC-----Ce
Q 001352 415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-----PV 489 (1093)
Q Consensus 415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~-----~v 489 (1093)
.++.+.+|+.+....+ .+ +|...|.+++|||||+ .|++++.||.|++||.++ ++..+. |.. .|
T Consensus 65 --~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv 132 (588)
T 2j04_A 65 --FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTY 132 (588)
T ss_dssp --CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCE
T ss_pred --CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccE
Confidence 4555555554432211 12 5688999999999999 799999999999999544 677777 765 49
Q ss_pred EEeeecccCCccEEEEEecCCeEEEEEcCCCCc-------eEEe----cCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352 490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 558 (1093)
Q Consensus 490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-------~~~~----~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 558 (1093)
.+++|+| ||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. ++.|
T Consensus 133 ~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tV 204 (588)
T 2j04_A 133 HCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSV 204 (588)
T ss_dssp EEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCE
T ss_pred EEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeE
Confidence 9999954 778999999999999999998753 3454 5567799999999999 666654 6779
Q ss_pred EEEeCCCCeee---eeee-cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEE--e
Q 001352 559 VEWNESEGAIK---RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF--N 632 (1093)
Q Consensus 559 ~iwd~~~~~~~---~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--s 632 (1093)
++||+.++... +++. +|. ..|.+++|+ ++.+++++ +++|++||+.+++....... +...+..++| +
T Consensus 205 rlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s 276 (588)
T 2j04_A 205 FSMTVSASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHE 276 (588)
T ss_dssp EEECCCSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTC
T ss_pred EEEECCCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeC
Confidence 99999887743 4553 554 789999999 58888887 69999999998877444433 4567999999 9
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352 633 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 712 (1093)
Q Consensus 633 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 712 (1093)
|++..+++++.+|+ ++|.... +++ +||+..+++. |++++
T Consensus 277 ~d~~~La~a~edG~-klw~~d~----------------~~~----------------------spd~~l~a~~--d~~v~ 315 (588)
T 2j04_A 277 KESTILLMSNKTSY-KVLLEDE----------------LHV----------------------TADNIIAPYL--EKKFK 315 (588)
T ss_dssp SSCEEEEECSSCEE-EEEESSS----------------EEE----------------------ECCCSSHHHH--HHHHH
T ss_pred CCCCEEEEEcCCCC-EEEeecc----------------EEE----------------------CCCceEEEEc--CCEEE
Confidence 99999999999999 9999871 223 4777777775 89999
Q ss_pred ecceeeccCccccccccCccccccceEEEEeecCCceEEEeec
Q 001352 713 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 755 (1093)
Q Consensus 713 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 755 (1093)
+|+..... +. ...+...|.+++|+|||+.+++++.
T Consensus 316 lW~~~g~~------l~--~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 316 KWSTIWNE------FN--NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HTTTTTTS------SS--SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred EEECCCCc------ee--eeccceEEEEEEECCCCCEEEEEEe
Confidence 99974322 11 1113567999999999998877764
No 84
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.9e-32 Score=295.24 Aligned_cols=252 Identities=17% Similarity=0.299 Sum_probs=213.3
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 470 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v 470 (1093)
+.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++.. .....+.+|.++|++++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975421 233478899999999999864 77 8999999999999
Q ss_pred EECCCCc--eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccC-----
Q 001352 471 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN----- 541 (1093)
Q Consensus 471 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d----- 541 (1093)
||+.+++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||++.... ...+..|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788899999999998875578999999999999999987642 4567788889999999997
Q ss_pred --------CCEEEEEecCCCCceeEEEEeCCCCe----eeeeeecccccCCCeEEEEEcCCC---CEEEEEeCCCcEEEE
Q 001352 542 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW 606 (1093)
Q Consensus 542 --------~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~v~~~~~~---~~l~~~~~dg~i~iw 606 (1093)
+++|++++. ++.|++||+.++. ....+.+|. ..|.+++|+|++ .+|++++.|++|++|
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 578999886 6679999998765 556777777 899999999984 789999999999999
Q ss_pred ECCCCc--e-EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352 607 DMNKVQ--L-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 654 (1093)
Q Consensus 607 d~~~~~--~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 654 (1093)
|+.++. . ...+....+...|.+++|+|+|++|++++.|+.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 998753 1 22332233445689999999999999999999999999763
No 85
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=316.00 Aligned_cols=330 Identities=10% Similarity=0.037 Sum_probs=248.0
Q ss_pred CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352 529 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 608 (1093)
Q Consensus 529 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~ 608 (1093)
-...|.+++|+|||+++|+++. |++|+ |...++ .+.+|. ..|.+++|+|+| .++.+.+|+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~----D~TV~--d~~~~~---~l~gh~---~~v~~V~FsPdg-------~~~~~~~~~~ 74 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFP----DISIG--QPKYAK---DINCNS---KNLFHVKEFPLE-------FENKLDFELA 74 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSS----SEEEE--EECCCS---CCSSBG---GGTEEEEEECCC-------CCCTTTTSCC
T ss_pred hhccEEEEEECCCCCEEEEEcC----Cceee--cccccc---eecCCC---ccEEEEEECCCC-------CcceEEEEeC
Confidence 3467899999999999999986 77788 655554 446776 899999999998 4555555554
Q ss_pred CCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCc
Q 001352 609 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 688 (1093)
Q Consensus 609 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 688 (1093)
+ ....+.... ...|.+++|||+|.+||+++.||.+++|+... .+..+. |...+
T Consensus 75 ~---~~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~-------------------- 127 (588)
T 2j04_A 75 Q---QNGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL-------------------- 127 (588)
T ss_dssp C---SSCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS--------------------
T ss_pred C---CceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc--------------------
Confidence 3 222232222 45699999999999999999999999999543 222211 11110
Q ss_pred eEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcc
Q 001352 689 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 768 (1093)
Q Consensus 689 ~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~ 768 (1093)
....+.+++|||||++|++++.||.+++|++....
T Consensus 128 ---------------------------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 128 ---------------------------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp ---------------------------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred ---------------------------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence 13358899999999999999999999999876431
Q ss_pred cCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCcee---EEEE-CCCC
Q 001352 769 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI-MPPS 844 (1093)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~---~~~~-~~~~ 844 (1093)
... ++. ..+........+|...|.+++|+||| +++++.|++|++||+.++.. .+++ .+|.
T Consensus 163 l~~---------~~~------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~ 226 (588)
T 2j04_A 163 ENT---------PEF------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASR 226 (588)
T ss_dssp TTC---------CCC------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred ccc---------ccc------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence 100 000 00122221223488999999999999 55555689999999988773 3566 4788
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEE--eCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001352 845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--SDALNILVSSGGDAQIFVWDVDGWGIQ 922 (1093)
Q Consensus 845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~--s~dg~~l~s~s~dg~i~iwd~~~~~~~ 922 (1093)
..|.+++|+ ++.||+++ +++|++||+.+++......+|.+.|..++| +||+..|++++.||+ ++|..+.
T Consensus 227 ~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~---- 297 (588)
T 2j04_A 227 RKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE---- 297 (588)
T ss_dssp SCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS----
T ss_pred CcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc----
Confidence 899999998 37889887 699999999988774444489999999999 999999999999999 9999872
Q ss_pred eeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEe
Q 001352 923 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 998 (1093)
Q Consensus 923 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~ 998 (1093)
++|+||+..++.. |+++++|+...+. +.. +.+ ...|.+++|||||+.+|+++
T Consensus 298 --------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~-~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 298 --------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNN-YET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp --------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSS-SCC-EEEEEEEEECTTSSEEEEEE
T ss_pred --------------------EEECCCceEEEEc-CCEEEEEECCCCc-eee-ecc-ceEEEEEEECCCCCEEEEEE
Confidence 5599999988875 9999999986554 332 333 67799999999999999886
No 86
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.5e-32 Score=304.19 Aligned_cols=290 Identities=12% Similarity=0.099 Sum_probs=246.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+..|..+|.+++|+|++++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ ++++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 44599999999999999999999999999999999875 113336779999999999999999 899999999999999
Q ss_pred CCCCceeEE--eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEEE
Q 001352 473 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLF 546 (1093)
Q Consensus 473 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l~ 546 (1093)
+.+++.... +..|...|.+++|++ ++.+|++++.||.|++||++.... ......+...|.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 999876544 467999999999965 668999999999999999998774 223356688999999999999999
Q ss_pred EEecCCCCceeEEEEeC------------------CCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352 547 SCGTSKEGESFLVEWNE------------------SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 608 (1093)
Q Consensus 547 ~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~ 608 (1093)
+++. ++.|++||+ .+++.+..+.+|. ..+.+++|+|+++++++++.||.|++||+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCC---CeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9986 667999995 4677888887776 89999999999999999999999999999
Q ss_pred CCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC--Cce--e--------------------------
Q 001352 609 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE--SNS--V-------------------------- 658 (1093)
Q Consensus 609 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~--~~~--~-------------------------- 658 (1093)
.+++.+..+..+. ..+.+++|+|++++++++ .|+.|++|++.+ +.. .
T Consensus 232 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 232 DKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp GGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred CCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 9999999988663 468999999999988887 899999999987 310 0
Q ss_pred ----------eec-ccccccceeeeecCCCceeeeeccCCceEecCCCCCCC---ccceeecccccceecceee
Q 001352 659 ----------DAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV---KPEISVEAENKSEVEKPLF 718 (1093)
Q Consensus 659 ----------~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---~~l~s~~~d~~i~~w~~~~ 718 (1093)
..+ .+|...|+++++. .++| +++++++.||.|++|++..
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~---------------------~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVL---------------------SGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEE---------------------ESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccCccccccccccccCCcceeEEe---------------------cCCCcceeeEEEecCCCceEEEEecC
Confidence 222 4777888888765 3566 8999999999999999764
No 87
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9e-31 Score=288.52 Aligned_cols=282 Identities=16% Similarity=0.270 Sum_probs=236.8
Q ss_pred ceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc
Q 001352 338 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 417 (1093)
Q Consensus 338 V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~ 417 (1093)
.++++||+++ +||+|. |++|+|||+.+|+++.... +.+|...|.+++|+|++++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEEC
Confidence 5789999997 578774 8999999999999876532 5578999999999999999999999
Q ss_pred CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-ceeEEeecCCCCeEEeeecc
Q 001352 418 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHA 496 (1093)
Q Consensus 418 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~ 496 (1093)
|++|++||+++++.++ .+.+|...+.++++. +. .+++++.++.+++|+..++ ..+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~~--~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeecC--CC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999987655 677999988876665 45 7999999999999998876 45677889999999999854
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCc----eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeee
Q 001352 497 KENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 572 (1093)
Q Consensus 497 ~~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 572 (1093)
++.++++++.||.|++||+.+++. ......+...+.+++++|++..++.... +..++.|++||...+......
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 667999999999999999987653 3455667778999999998776553322 123778999999988776665
Q ss_pred ecccccCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001352 573 QGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 650 (1093)
Q Consensus 573 ~~~~~~~~~v~~v~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 650 (1093)
... ..+..+.|+|+++.+++++ .|+.|++||+.+++++..+..| ...|.+++|+|+|++|++++.||+|++|
T Consensus 238 ~~~----~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iW 311 (318)
T 4ggc_A 238 DAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDGATVASAAADETLRLW 311 (318)
T ss_dssp ECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred cce----eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 443 5799999999999988755 7999999999999999999866 4569999999999999999999999999
Q ss_pred EcCCC
Q 001352 651 ETPES 655 (1093)
Q Consensus 651 ~~~~~ 655 (1093)
|+.+.
T Consensus 312 d~~~~ 316 (318)
T 4ggc_A 312 RCFEL 316 (318)
T ss_dssp CCSCC
T ss_pred ECCCC
Confidence 98754
No 88
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-31 Score=302.24 Aligned_cols=293 Identities=17% Similarity=0.223 Sum_probs=245.5
Q ss_pred eecCCCCCeEEEEECCC----CCEEEEEEcCCEEEEEEccCCCcccceEEec--cccccEEEEEeeCC----CCcEEEEE
Q 001352 392 LVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVIT 461 (1093)
Q Consensus 392 ~~~~h~~~V~~v~~s~d----g~~las~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d----~~~l~l~s 461 (1093)
+..+|..+|.+++|+|+ ...+++++.++.|++||+.+++.+....... .|...|.+++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 36689999999999984 4566677777799999999887665443332 26788999999999 55 7999
Q ss_pred EcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe---cCCCCceEEEEE
Q 001352 462 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAY 538 (1093)
Q Consensus 462 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~ 538 (1093)
|+.||.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999999999999999999999652 5579999999999999999998888877 678889999999
Q ss_pred ccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeec-------------------------ccccCCCeEEEEEcCCCCE
Q 001352 539 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------------------LQLQHNSVSVVHFDTAKDQ 593 (1093)
Q Consensus 539 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~v~~v~~~~~~~~ 593 (1093)
+|+++++++++. ++.|++||+.+++....+.. ...+...|.+++|+ +++
T Consensus 170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 243 (366)
T 3k26_A 170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL 243 (366)
T ss_dssp CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence 999999999986 66799999998876654443 00133889999998 679
Q ss_pred EEEEeCCCcEEEEECCCCce--------------EEEEecCCCCCCCceEEEecC--CCEEEEEECCCeEEEEEcCCCce
Q 001352 594 ILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESNS 657 (1093)
Q Consensus 594 l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iw~~~~~~~ 657 (1093)
+++++.||.|++||+.++.. +..+..+ ...|.+++|+|+ +++|++++.||.|++|++.+++.
T Consensus 244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP 321 (366)
T ss_dssp EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred EEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence 99999999999999988754 5555544 346899999999 99999999999999999998754
Q ss_pred e----eecccc--cccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceeccee
Q 001352 658 V----DAAGVL--SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 717 (1093)
Q Consensus 658 ~----~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 717 (1093)
. ..+..| ...|.+++|+ |+++++++++.||.|++||+.
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFS----------------------RDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred ccccceEEcccccCCceEEEEeC----------------------CCCCeEEEEeCCCEEEEEEec
Confidence 3 356666 6888888886 788999999999999999964
No 89
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3e-32 Score=298.91 Aligned_cols=253 Identities=15% Similarity=0.201 Sum_probs=205.5
Q ss_pred HhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP- 407 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~- 407 (1093)
..+.+|++.|++++|+|+|+ +||+|+.|++|+|||+.++...... .+.+|.+.|.+++|+|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~~-----------------~l~gH~~~V~~v~~~~~ 68 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILIA-----------------DLRGHEGPVWQVAWAHP 68 (316)
T ss_dssp -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEECCG
T ss_pred eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEEE-----------------EEcCCCccEEEEEeCCC
Confidence 45779999999999999998 5999999999999999887532211 1678999999999987
Q ss_pred -CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEEEECCCCce---eEE
Q 001352 408 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYS 481 (1093)
Q Consensus 408 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~~---~~~ 481 (1093)
++++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++.. ...
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~ 145 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKI 145 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred CCCCEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeee
Confidence 4899999999999999999987422 23367899999999999998 66 799999999999999987642 355
Q ss_pred eecCCCCeEEeeecccC---------------CccEEEEEecCCeEEEEEcCCCC---ceEEecCCCCceEEEEEccCC-
Q 001352 482 FEGHGAPVYSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANG- 542 (1093)
Q Consensus 482 ~~~h~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~s~d~- 542 (1093)
+.+|...|.+++|+|.. ++.+|++++.|+.|++||++... ....+..|...|.+++|+|++
T Consensus 146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225 (316)
T ss_dssp TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence 67899999999997652 14689999999999999997553 445677888999999999987
Q ss_pred ---CEEEEEecCCCCceeEEEEeCCCCe----eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001352 543 ---RRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 609 (1093)
Q Consensus 543 ---~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~ 609 (1093)
++|++++. ++.|++|++.+.. ....+..|. ..|.+++|+|++++|++++.||+|++|+..
T Consensus 226 ~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 226 LPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999886 7789999987631 223444555 889999999999999999999999999975
No 90
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=310.74 Aligned_cols=299 Identities=13% Similarity=0.208 Sum_probs=232.6
Q ss_pred CCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeeccccccee-eeeeecCCC------------CCe
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF-KTALVRDPG------------VSV 400 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~------------~~V 400 (1093)
|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++...... ...+ ....+.+|. ..|
T Consensus 27 ~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~---------~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 27 EADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHS---------RGEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp GGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCC---------CCCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred ccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCccc---------ccceeEecccccccccccccccccccCce
Confidence 567999999999998 59999999999999999876311000 0000 011266788 889
Q ss_pred EEEEECCCC--CEEEEEEcCCEEEEEEccCCCccc------------------------------------ceEE-eccc
Q 001352 401 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDAR------------------------------------QQLE-IDAH 441 (1093)
Q Consensus 401 ~~v~~s~dg--~~las~~~d~~i~iwd~~~~~~~~------------------------------------~~~~-~~~h 441 (1093)
.+++|+|++ .+|++++.|++|++||+.++.... .... ..+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 899999999999999998743210 0011 3689
Q ss_pred cccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC-CceeE-------EeecCCCCeEEeeecccCCc-cEEEEEecCCeE
Q 001352 442 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI 512 (1093)
Q Consensus 442 ~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~i 512 (1093)
...|.+++|+|+++ +|++| .|+.|++||+.+ ++.+. .+.+|...|.+++|+| ++ .+|++++.||.|
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence 99999999999999 78888 799999999984 44444 2568999999999965 44 799999999999
Q ss_pred EEEEcCCCCc----eEEecCCCC------------ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-Ceeeeeeecc
Q 001352 513 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL 575 (1093)
Q Consensus 513 ~vwd~~~~~~----~~~~~~~~~------------~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~ 575 (1093)
++||+++... ...+..+.. .|.+++|+|+|++|++++. +.|++||+.+ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence 9999998876 677777765 8999999999999998863 5699999997 8888888887
Q ss_pred cccCC------------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-----------------------
Q 001352 576 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----------------------- 620 (1093)
Q Consensus 576 ~~~~~------------~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------- 620 (1093)
..... .+..++|+|++++|++|+.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 62111 1334899999999999999999999999998876422111
Q ss_pred -------CCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352 621 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP 653 (1093)
Q Consensus 621 -------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 653 (1093)
.....|..++|+|++++||+++.++ +.+|..+
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1123578899999999999998865 7777654
No 91
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.7e-31 Score=298.16 Aligned_cols=292 Identities=13% Similarity=0.165 Sum_probs=240.7
Q ss_pred eecCCCCCeEEEEECCCCCEEE-EEEc---CCEEEEEEccCCCcccceEEeccccccEEEEEeeCC---CCcEEEEEEcC
Q 001352 392 LVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGD 464 (1093)
Q Consensus 392 ~~~~h~~~V~~v~~s~dg~~la-s~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d---~~~l~l~s~~~ 464 (1093)
++.+|...|.+++|+|++..++ +|+. |+.|++||+.+++.... ...+|...|.+++|+|+ ++ ++++++.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 3667999999999999997655 5554 89999999998864332 23379999999999999 57 7999999
Q ss_pred CCcEEEEECCCCc-eeEEeecCCCCeEEeeecc----cCCccEEEEEecCCeEEEEEcCCCC-ceEEecCCCC----ceE
Q 001352 465 DKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GCT 534 (1093)
Q Consensus 465 d~~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~----~v~ 534 (1093)
||.|++||+.+++ .+..+.+|...|.+++|.+ ++++.+|++++.||.|++||+.... ....+..+.. .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999998 8899999999999997643 5678899999999999999999887 5666655443 788
Q ss_pred EEE----EccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC---CCCEEEEEeCCCcEEEEE
Q 001352 535 RMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIWD 607 (1093)
Q Consensus 535 ~~~----~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~---~~~~l~~~~~dg~i~iwd 607 (1093)
+++ |+|+++++++++. ++.|++||+.+++.... ..+. ..+.+++|+| +++++++++.||.|++||
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d 240 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240 (357)
T ss_dssp EEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEEE
T ss_pred EEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEEe
Confidence 888 7899999999986 67799999999987544 3444 7899999999 899999999999999999
Q ss_pred CCCCceEEEEe---cCCCCCCCceEEEecCCC-EEEEEECCCeEEEEEcCCC-------------------ceeeecccc
Q 001352 608 MNKVQLLTTID---AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES-------------------NSVDAAGVL 664 (1093)
Q Consensus 608 ~~~~~~~~~~~---~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~~ 664 (1093)
+.+++....+. ...+...|.+++|+|+++ ++++++.||.|++|++... ..+..+.+|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (357)
T 3i2n_A 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS 320 (357)
T ss_dssp EEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC
T ss_pred CcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC
Confidence 98876654443 112345699999999998 8999999999999998754 245566777
Q ss_pred cccceeeeecCCCceeeeeccCCceEecCCCCCCCccce-eecccccceeccee
Q 001352 665 SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPL 717 (1093)
Q Consensus 665 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-s~~~d~~i~~w~~~ 717 (1093)
...|.+++|+ |++++++ +++.|+.+++|++.
T Consensus 321 ~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 321 TQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp SSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEEECC
Confidence 8888888886 7788888 89999999999976
No 92
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-30 Score=287.24 Aligned_cols=281 Identities=15% Similarity=0.169 Sum_probs=246.3
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+.+|.+.|.+++| |++++|++++.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|+
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGVP 87 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEEE
Confidence 7899999999999 999999999999999999998875443 5678999999999999999 899999999999999
Q ss_pred CCCC---ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEcc-CCCEEEEE
Q 001352 473 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSC 548 (1093)
Q Consensus 473 ~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~ 548 (1093)
+... +.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.++++.| ++++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred eeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 8754 667888999999999998 346999999999999999 5667778888999999999988 99999999
Q ss_pred ecCCCCceeEEEEeCCCCeeeeeeec-ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352 549 GTSKEGESFLVEWNESEGAIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 627 (1093)
Q Consensus 549 ~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 627 (1093)
+. ++.|++|| .++....+.. +. ..+.+++|+|++. +++++.||.|++||+.+++.+..+..+. ..+.
T Consensus 162 ~~----d~~i~i~d--~~~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~ 229 (313)
T 3odt_A 162 SA----DKTIKLWQ--NDKVIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFVY 229 (313)
T ss_dssp ET----TSCEEEEE--TTEEEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS--SCEE
T ss_pred EC----CCCEEEEe--cCceEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC--ceEE
Confidence 86 66799999 5566666666 44 8899999999987 9999999999999999999999888654 4699
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001352 628 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 707 (1093)
Q Consensus 628 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 707 (1093)
+++|+|++ .+++++.||.|++||+.+++....+..+...+.+++++ |+++ +++++.
T Consensus 230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~-~~~~~~ 285 (313)
T 3odt_A 230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM----------------------SNGD-IIVGSS 285 (313)
T ss_dssp EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC----------------------TTSC-EEEEET
T ss_pred EEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc----------------------cCCC-EEEEeC
Confidence 99999999 58999999999999999999999999999999999886 5666 667899
Q ss_pred cccceecceeeccC
Q 001352 708 ENKSEVEKPLFARP 721 (1093)
Q Consensus 708 d~~i~~w~~~~~~~ 721 (1093)
|+.+++|++.....
T Consensus 286 dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 286 DNLVRIFSQEKSRW 299 (313)
T ss_dssp TSCEEEEESCGGGC
T ss_pred CCcEEEEeCCCCce
Confidence 99999999875443
No 93
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.3e-30 Score=299.06 Aligned_cols=282 Identities=19% Similarity=0.252 Sum_probs=242.3
Q ss_pred CeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce
Q 001352 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 478 (1093)
Q Consensus 399 ~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 478 (1093)
.++.|+||++ .+||+|. |++|+|||..+|+.... ..+.+|...|++++|+|||+ +|++|+.||+|+|||+.++++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 4677999986 4777775 89999999999976543 24567889999999999999 899999999999999999999
Q ss_pred eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352 479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 557 (1093)
Q Consensus 479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 557 (1093)
+..+.+|...+.++++ ++.++++|+.|+.+++||...... ...+..|...+..+.++|+++++++++. ++.
T Consensus 182 ~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~~ 253 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNL 253 (420)
T ss_dssp EEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred EEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----ccc
Confidence 9999999999999877 346999999999999999987554 4577889999999999999999999986 667
Q ss_pred EEEEeCCCCee----eeeeecccccCCCeEEEEEcCCCCEE-EE--EeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352 558 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQI-LA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 630 (1093)
Q Consensus 558 i~iwd~~~~~~----~~~~~~~~~~~~~v~~v~~~~~~~~l-~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 630 (1093)
+++|+..+++. +.....+. ..|.+++|+|.+..+ ++ |+.|++|++||+.+++....+..+. .+.++.
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~ 327 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSIL 327 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred ceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeeee
Confidence 99999987753 33444444 889999999986544 43 4579999999999999999887653 488999
Q ss_pred EecCCCEEEEEE--CCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352 631 FNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 708 (1093)
Q Consensus 631 ~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 708 (1093)
|+|+++.+++++ .|+.|++||+.+++.+..+.+|...|.+++|+ |+|+++++++.|
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D 385 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAAD 385 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecC
Confidence 999999998876 68999999999999999999999999999996 789999999999
Q ss_pred ccceecceeeccC
Q 001352 709 NKSEVEKPLFARP 721 (1093)
Q Consensus 709 ~~i~~w~~~~~~~ 721 (1093)
++|++|++....+
T Consensus 386 ~tvriWdv~~~~~ 398 (420)
T 4gga_A 386 ETLRLWRCFELDP 398 (420)
T ss_dssp TEEEEECCSCSSC
T ss_pred CeEEEEECCCCCc
Confidence 9999999764433
No 94
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1e-30 Score=301.46 Aligned_cols=276 Identities=21% Similarity=0.316 Sum_probs=239.4
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 412 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l 412 (1093)
+|...|.|++| |++ ++++|+.||.|++||+.+++.+.. +.+|...|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--CCCEE
Confidence 56778998887 777 589999999999999999988765 7789999999999 88999
Q ss_pred EEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee---EEeecCCCCe
Q 001352 413 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGHGAPV 489 (1093)
Q Consensus 413 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~---~~~~~h~~~v 489 (1093)
++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.||.|++||+.+++.. ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999987554 6789999999999974 4 7999999999999999988766 6778999999
Q ss_pred EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352 490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 569 (1093)
Q Consensus 490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 569 (1093)
.++++ ++.++++++.||.|++||+++.+....+..+...+.++.+ +++++++++. ++.|++||+.+++.+
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACL 329 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEE
Confidence 99988 4579999999999999999999999999999999999988 5789999886 667999999999999
Q ss_pred eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------eEEEEecCCCCCCCceEEEecCCCEEEE
Q 001352 570 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGTLLAV 640 (1093)
Q Consensus 570 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 640 (1093)
..+.+|. ..|.+++| ++.++++|+.||.|++||+.++. .+..+..+ ...|.+++| ++.+|++
T Consensus 330 ~~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s 400 (435)
T 1p22_A 330 RVLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVS 400 (435)
T ss_dssp EEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEE
T ss_pred EEEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEE
Confidence 9999887 88999998 67899999999999999998766 67777655 446899999 7889999
Q ss_pred EECCCeEEEEEcCCCcee
Q 001352 641 IANENRIKILETPESNSV 658 (1093)
Q Consensus 641 ~~~dg~i~iw~~~~~~~~ 658 (1093)
++.||.|++|++.+....
T Consensus 401 ~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 401 SSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp CCSSSEEEEEC-------
T ss_pred EeCCCEEEEEECCCCCCc
Confidence 999999999999876443
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=5.5e-31 Score=293.63 Aligned_cols=285 Identities=8% Similarity=0.052 Sum_probs=240.7
Q ss_pred hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352 331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 410 (1093)
Q Consensus 331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~ 410 (1093)
..+|.+.|++++|+|+++ +|++|+.||.|+|||+.++...... ..+.+|...|.+++|+|+++
T Consensus 7 ~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~~~ 69 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDNTD 69 (342)
T ss_dssp SSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEESSS
T ss_pred ccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCCCC
Confidence 347999999999999998 5899999999999999988721110 01446999999999999999
Q ss_pred -EEEEEEcCCEEEEEEc-cCCCcccceEEecc--ccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC---------Cc
Q 001352 411 -LLGVAYSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---------GS 477 (1093)
Q Consensus 411 -~las~~~d~~i~iwd~-~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---------~~ 477 (1093)
+|++|+.|+.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++||+.+ ++
T Consensus 70 ~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 142 (342)
T 1yfq_A 70 LQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp EEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred cEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCC
Confidence 9999999999999999 87653 36778 999999999999 77 899999999999999988 77
Q ss_pred eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC-CC--ceEEecCCCCceEEEEEcc-CCCEEEEEecCCC
Q 001352 478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LG--ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE 553 (1093)
Q Consensus 478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~--~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~ 553 (1093)
++..+. |...|.+++|++ ++ +++++.||.|++||++. .. .......+...+.+++|+| +++++++++.
T Consensus 143 ~~~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--- 214 (342)
T 1yfq_A 143 NSNNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI--- 214 (342)
T ss_dssp CSSSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET---
T ss_pred eeeEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec---
Confidence 777777 899999999964 43 99999999999999998 44 3345556777899999999 9999999986
Q ss_pred CceeEEEEeCCCC------eeeeeeecccc------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC
Q 001352 554 GESFLVEWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 621 (1093)
Q Consensus 554 ~~~~i~iwd~~~~------~~~~~~~~~~~------~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 621 (1093)
++.|++|+...+ +....+..|.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+..+.
T Consensus 215 -dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h 293 (342)
T 1yfq_A 215 -DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN 293 (342)
T ss_dssp -TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred -CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc
Confidence 677999999887 77778887751 12489999999999999999999999999999999988877541
Q ss_pred CCCCCceEEEecCCCEEEEEECCCe-EEEEE
Q 001352 622 GLPENPRICFNKNGTLLAVIANENR-IKILE 651 (1093)
Q Consensus 622 ~~~~v~~v~~s~~~~~l~~~~~dg~-i~iw~ 651 (1093)
...|.+++ |++++|++++.||. .+.+.
T Consensus 294 -~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 294 -EDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -SSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred -CCCceEec--CCCCeEEEEecCCccccccc
Confidence 24588888 99999999999998 44444
No 96
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-32 Score=308.16 Aligned_cols=241 Identities=13% Similarity=0.107 Sum_probs=198.9
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCC--CcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
.|.++|.+++|+|||++||+|+.|+.|++||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|++|++||
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYE 83 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC-
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence 47789999999999999999999999999999987 4333 5779999999999999998 799999999999999
Q ss_pred CCCCc---eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecC-CCCceEEEEEccCCCEE
Q 001352 473 AVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDA-PGLGCTRMAYSANGRRL 545 (1093)
Q Consensus 473 ~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~-~~~~v~~~~~s~d~~~l 545 (1093)
+.+++ ....+.+|...|.+++|++ ++.+|++++.|+.|++||++.... ...+.. |...|.+++|+|++++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence 99987 6778888999999999965 667999999999999999998763 566666 88999999999999999
Q ss_pred EEEecCCCCceeEEEEeCC------------------CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001352 546 FSCGTSKEGESFLVEWNES------------------EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 607 (1093)
Q Consensus 546 ~~~~~~~~~~~~i~iwd~~------------------~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd 607 (1093)
++++. ++.|++||+. .++.+..+ +|. ..|.+++|+|++++|++++.||.|++||
T Consensus 162 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 162 AAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp EEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred EEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 99986 6679999985 34555556 555 8899999999999999999999999999
Q ss_pred CCCCce----EEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352 608 MNKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 653 (1093)
Q Consensus 608 ~~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 653 (1093)
+.+++. +..+..+ ...|.+++|+|++++|++++.++.+ +|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999887 5666655 3468999999999999998877666 66654
No 97
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=2.4e-31 Score=291.74 Aligned_cols=250 Identities=18% Similarity=0.319 Sum_probs=205.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 470 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v 470 (1093)
+.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++ ++ +|++|+.|++|++
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~i 85 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVII 85 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEEE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEEE
Confidence 6789999999999999999999999999999999886421 23468899999999999864 67 7999999999999
Q ss_pred EECCCCc--eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc---eEEecCCCCceEEEEEccC----
Q 001352 471 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN---- 541 (1093)
Q Consensus 471 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d---- 541 (1093)
||+.+++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||+..... ...+..|...+.+++|+|+
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 165 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG 165 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCc
Confidence 9999874 567788999999999998876688999999999999999987643 2344567778999999998
Q ss_pred -------------CCEEEEEecCCCCceeEEEEeCCCC---eeeeeeecccccCCCeEEEEEcCCC----CEEEEEeCCC
Q 001352 542 -------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDH 601 (1093)
Q Consensus 542 -------------~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~~~dg 601 (1093)
+++|++++. ++.|++||+..+ +.+..+.+|. ..|.+++|+|++ ++|++++.||
T Consensus 166 ~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D~ 238 (316)
T 3bg1_A 166 SLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQDG 238 (316)
T ss_dssp -----CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred cccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCCC
Confidence 468888875 677999999755 4566777777 899999999986 7899999999
Q ss_pred cEEEEECCCCc----eEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352 602 VIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 654 (1093)
Q Consensus 602 ~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 654 (1093)
+|++|++.+.. ....+..+ ...|.+++|+|++++|++++.|+.|++|+...
T Consensus 239 ~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 239 RVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred eEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99999987631 11223323 34689999999999999999999999999763
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1e-30 Score=298.24 Aligned_cols=297 Identities=13% Similarity=0.170 Sum_probs=241.6
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-CCCEEEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVA 415 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-dg~~las~ 415 (1093)
....++++|+...++++|+.||.|+|||+.+...... ....+.+|.+.|.+++|+| ++++||+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 5667999999877777789999999999966432210 0112678999999999999 99999999
Q ss_pred EcCCEEEEEEccCCCcc----cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe--ecCCCCe
Q 001352 416 YSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAPV 489 (1093)
Q Consensus 416 ~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~--~~h~~~v 489 (1093)
+.||+|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+ .+|...|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987432 233467899999999999999843 7999999999999999999999999 8899999
Q ss_pred EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCc-eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001352 490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 567 (1093)
Q Consensus 490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~-v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 567 (1093)
.+++|++ ++.+|++++.||.|++||+++.+....+ ..+... +.+++|+|++++++++.. +..++.|++||+.+++
T Consensus 180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCS
T ss_pred EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCcccc
Confidence 9999965 6789999999999999999998888877 566654 899999999999988732 1237889999999876
Q ss_pred e-eeeeecccccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCce-EEEEecCCCCCCCceEEEecCCCEEEEEECC
Q 001352 568 I-KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANE 644 (1093)
Q Consensus 568 ~-~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 644 (1093)
. +...... +...+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++ .+
T Consensus 257 ~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~ 332 (402)
T 2aq5_A 257 EPLSLQELD--TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KC 332 (402)
T ss_dssp SCSEEEECC--CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GT
T ss_pred CCceEEecc--CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cc
Confidence 5 3333211 1367999999999999975 55799999999999884 555544444467999999999988764 56
Q ss_pred CeEEEEEcCCCc
Q 001352 645 NRIKILETPESN 656 (1093)
Q Consensus 645 g~i~iw~~~~~~ 656 (1093)
+.+++|++.++.
T Consensus 333 ~~~~~~~l~~~~ 344 (402)
T 2aq5_A 333 EIARFYKLHERK 344 (402)
T ss_dssp EEEEEEEEETTE
T ss_pred eeEEEEEcCCCc
Confidence 799999998753
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=1.2e-30 Score=294.06 Aligned_cols=290 Identities=17% Similarity=0.200 Sum_probs=237.9
Q ss_pred HHHhhccCCCCceeeeecCC---CceEEEEEccCCcEEEEecCC-CceeEEeeeeeeecccccceeeeeeecCCCCCeEE
Q 001352 327 VAQTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 402 (1093)
Q Consensus 327 ~~~~l~~h~~~V~~~~~spd---g~~llasg~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 402 (1093)
.++.+.+|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+.. .+.+|...|.+
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~v~~ 91 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGPVLD 91 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSCEEE
T ss_pred eeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCCEEE
Confidence 34567899999999999999 57 699999999999999998 544321 15679999999
Q ss_pred EEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEe--eCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352 403 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTGSRTY 480 (1093)
Q Consensus 403 v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 480 (1093)
++|+|++++|++++.|+.|++||+.+++.+. +.+|...|.+++| ++++. ++++++.|+.|++||+.+++.+.
T Consensus 92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~ 165 (368)
T 3mmy_A 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNPMM 165 (368)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSCSE
T ss_pred EEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcEEE
Confidence 9999999999999999999999999876443 5579999999999 88888 89999999999999999999999
Q ss_pred EeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCCCE----EEEEecCCCC
Q 001352 481 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGTSKEG 554 (1093)
Q Consensus 481 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~----l~~~~~~~~~ 554 (1093)
.+..+. .+.++.+.. ..+++++.++.+++|+++......... .......++++.++... +++++.
T Consensus 166 ~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 236 (368)
T 3mmy_A 166 VLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI---- 236 (368)
T ss_dssp EEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET----
T ss_pred EEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC----
Confidence 998665 566665532 478999999999999998776554332 23345667777666554 888876
Q ss_pred ceeEEEEeCCCC---eeeeeeecccc---------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC
Q 001352 555 ESFLVEWNESEG---AIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 622 (1093)
Q Consensus 555 ~~~i~iwd~~~~---~~~~~~~~~~~---------~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 622 (1093)
++.|++||+... .....+.+|.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-- 314 (368)
T 3mmy_A 237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-- 314 (368)
T ss_dssp TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC--
T ss_pred CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC--
Confidence 677999999987 55667776651 0116999999999999999999999999999999999888765
Q ss_pred CCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352 623 LPENPRICFNKNGTLLAVIANENRIKILET 652 (1093)
Q Consensus 623 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 652 (1093)
...|.+++|+|+|++|++++.|+..+.|+.
T Consensus 315 ~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 315 DQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp SSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CCCceEEEECCCCCeEEEEecccccccccc
Confidence 346999999999999999999876555443
No 100
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.3e-30 Score=291.97 Aligned_cols=285 Identities=15% Similarity=0.155 Sum_probs=241.6
Q ss_pred cCCCCC--eEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEE
Q 001352 394 RDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 471 (1093)
Q Consensus 394 ~~h~~~--V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 471 (1093)
.+|... +.+++|++ ..+++++.|+.|++||+.+++..... ...|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw 161 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY 161 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence 345544 55566664 56888889999999999998755421 224899999999999999 89999999999999
Q ss_pred ECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCCEEEEEec
Q 001352 472 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGT 550 (1093)
Q Consensus 472 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 550 (1093)
|+.+++.+..+.+|...|.+++| ++.++++++.||.|++||++. ......+..+...|.+++|+|+++++++++.
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ECcCCeEEEEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 99999999999999999999998 346999999999999999994 5556778889999999999999999999986
Q ss_pred CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE-Ee--CCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352 551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AG--DDHVIKIWDMNKVQLLTTIDAGGGLPENP 627 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 627 (1093)
++.|++||+.+++.+..+..|. ..|.+++|+|++..+++ ++ .|+.|++||+.+++.+..+..+ ..+.
T Consensus 238 ----d~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~ 307 (401)
T 4aez_A 238 ----DNVVQIWDARSSIPKFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVT 307 (401)
T ss_dssp ----TSCEEEEETTCSSEEEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEE
T ss_pred ----CCeEEEccCCCCCccEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEE
Confidence 6679999999999998888877 89999999998765554 44 7999999999999999888754 3589
Q ss_pred eEEEecCCCEEEEEE--CCCeEEEEEcCCCceee--ecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccce
Q 001352 628 RICFNKNGTLLAVIA--NENRIKILETPESNSVD--AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 703 (1093)
Q Consensus 628 ~v~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 703 (1093)
+++|+|+++++++++ .||.|++|++.++.... .+.+|...+.+++++ |++++++
T Consensus 308 ~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~ 365 (401)
T 4aez_A 308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS----------------------PDGRILS 365 (401)
T ss_dssp EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC----------------------TTSSEEE
T ss_pred EEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC----------------------CCCCEEE
Confidence 999999999999954 89999999999864443 456888888888886 7889999
Q ss_pred eecccccceecceeecc
Q 001352 704 SVEAENKSEVEKPLFAR 720 (1093)
Q Consensus 704 s~~~d~~i~~w~~~~~~ 720 (1093)
+++.|+.+++|++..+.
T Consensus 366 s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 366 TAASDENLKFWRVYDGD 382 (401)
T ss_dssp EECTTSEEEEEECCC--
T ss_pred EEeCCCcEEEEECCCCc
Confidence 99999999999987443
No 101
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=278.28 Aligned_cols=280 Identities=19% Similarity=0.240 Sum_probs=237.1
Q ss_pred eEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352 400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 479 (1093)
Q Consensus 400 V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 479 (1093)
.++|+||+++ +||+| .|++|+|||+.+++.++.. .+.+|...|++++|+|+++ ++++|+.|++|++||+.+++++
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 5679999987 77776 5899999999999866533 4567889999999999999 8999999999999999999999
Q ss_pred EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCc-eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352 480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 558 (1093)
Q Consensus 480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 558 (1093)
..+.+|...+.++.+ ++..+++++.++.+++|+...... ...+..+...+..+.++++++++++++. ++.|
T Consensus 103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i 174 (318)
T 4ggc_A 103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV 174 (318)
T ss_dssp EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence 999999999988765 346899999999999999887654 4567888899999999999999999986 6679
Q ss_pred EEEeCCCCeeeeee-ecccccCCCeEEEEEcCCCCEEE---EEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC
Q 001352 559 VEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQIL---AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 634 (1093)
Q Consensus 559 ~iwd~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~---~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 634 (1093)
++||+.+++..... .....+...|.++.++|++..++ +++.++.|++||............. ..+..++|+|+
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~---~~v~~~~~~~~ 251 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILWSPH 251 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS---SCEEEEEEETT
T ss_pred eEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce---eeeeeeeeccc
Confidence 99999987643221 11222347899999999876543 4668899999999998887776544 34889999999
Q ss_pred CCEEEEEE--CCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccce
Q 001352 635 GTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 712 (1093)
Q Consensus 635 ~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~ 712 (1093)
+..+++++ .|+.|++||+.+++.+..+.+|...|++++|+ |+++++++++.|++|+
T Consensus 252 ~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D~~v~ 309 (318)
T 4ggc_A 252 YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAADETLR 309 (318)
T ss_dssp TTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETTTEEE
T ss_pred ccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecCCeEE
Confidence 99888765 68999999999999999999999999999996 7889999999999999
Q ss_pred eccee
Q 001352 713 VEKPL 717 (1093)
Q Consensus 713 ~w~~~ 717 (1093)
+||+.
T Consensus 310 iWd~~ 314 (318)
T 4ggc_A 310 LWRCF 314 (318)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 99975
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=5e-30 Score=297.73 Aligned_cols=253 Identities=14% Similarity=0.227 Sum_probs=207.7
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCc--------ccceEEecccc------------ccEEEEEeeCCC-
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC- 454 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~--------~~~~~~~~~h~------------~~v~~~~~s~d~- 454 (1093)
|.+.|.+++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. ..|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 678999999999999999999999999999998752 11244677998 889999999998
Q ss_pred -CcEEEEEEcCCCcEEEEECCCCcee---------------------------------------EE-eecCCCCeEEee
Q 001352 455 -KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSLC 493 (1093)
Q Consensus 455 -~~l~l~s~~~d~~i~vwd~~~~~~~---------------------------------------~~-~~~h~~~v~~~~ 493 (1093)
. .+++++.|++|++||+.++... .. ..+|...|.+++
T Consensus 107 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 5 7999999999999998775432 12 367999999999
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEE--------ecCCCCceEEEEEccCC-CEEEEEecCCCCceeEEEEeCC
Q 001352 494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNES 564 (1093)
Q Consensus 494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~ 564 (1093)
|++ ++.+|+++ .||.|++||++....... +..+...|.+++|+|++ +++++++. ++.|++||+.
T Consensus 185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~ 257 (447)
T 3dw8_B 185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDMR 257 (447)
T ss_dssp ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEETT
T ss_pred EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEECc
Confidence 966 66799998 799999999985443332 45678899999999998 89999986 6679999999
Q ss_pred CCee----eeeeecccc---------cCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCC-----
Q 001352 565 EGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE----- 625 (1093)
Q Consensus 565 ~~~~----~~~~~~~~~---------~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~----- 625 (1093)
+++. ...+.++.. +...|.+++|+|++++|++++. +.|++||+.+ ++.+..+..+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence 9887 677777650 0128999999999999999999 9999999997 888888876643111
Q ss_pred --------CceEEEecCCCEEEEEECCCeEEEEEcCCCcee
Q 001352 626 --------NPRICFNKNGTLLAVIANENRIKILETPESNSV 658 (1093)
Q Consensus 626 --------v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 658 (1093)
+..++|+|++++|++++.||.|++||+.+++.+
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 234999999999999999999999999988665
No 103
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=7.5e-30 Score=285.27 Aligned_cols=263 Identities=10% Similarity=0.117 Sum_probs=221.0
Q ss_pred hhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC--
Q 001352 330 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-- 407 (1093)
Q Consensus 330 ~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~-- 407 (1093)
.+.+|++.|++++|+|+|+ +||+|+.||.|+|||+.++....... ..+.+|...|.+++|+|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~~~~~ 69 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELS---------------DSWRAHDSSIVAIDWASPE 69 (351)
T ss_dssp EECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEE---------------EEEECCSSCEEEEEECCGG
T ss_pred cCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceec---------------ceeccCCCcEEEEEEcCCC
Confidence 4679999999999999998 58999999999999999875332111 11668999999999999
Q ss_pred CCCEEEEEEcCCEEEEEEccCCCcc------cceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEEEECCCCcee
Q 001352 408 DGSLLGVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSRT 479 (1093)
Q Consensus 408 dg~~las~~~d~~i~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~~~ 479 (1093)
|+++|++++.|+.|++||+.+++.. .....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++.+
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCT
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHh
Confidence 6999999999999999999987431 334467899999999999999 88 8999999999999999998876
Q ss_pred EEee-------------cCCCCeEEeeeccc-CCccEEEEEecCCeEEEEEcCCCCc--eEEecCCCCceEEEEEccCC-
Q 001352 480 YSFE-------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG- 542 (1093)
Q Consensus 480 ~~~~-------------~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d~- 542 (1093)
..+. .|...+.+++|+|. .++.++++++.++.+.+|+...... ...+..|...|.+++|+|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~ 227 (351)
T 3f3f_A 148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIG 227 (351)
T ss_dssp TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSS
T ss_pred ccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCC
Confidence 5443 58889999999764 1357999999999998888777665 55677788899999999998
Q ss_pred ---CEEEEEecCCCCceeEEEEeCCCC----------------------------------------------eeeeeee
Q 001352 543 ---RRLFSCGTSKEGESFLVEWNESEG----------------------------------------------AIKRTYQ 573 (1093)
Q Consensus 543 ---~~l~~~~~~~~~~~~i~iwd~~~~----------------------------------------------~~~~~~~ 573 (1093)
++|++++. ++.|++||+.++ +.+..+.
T Consensus 228 ~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (351)
T 3f3f_A 228 RWYQLIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD 303 (351)
T ss_dssp CSSEEEEEEET----TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC
T ss_pred CcceEEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence 78999886 667999999875 5566666
Q ss_pred cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEE
Q 001352 574 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 617 (1093)
Q Consensus 574 ~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 617 (1093)
+|. ..|.+++|+|++++|++++.||.|++||+.+++....+
T Consensus 304 ~h~---~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 304 DHN---GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp TTS---SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccc---ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 666 89999999999999999999999999999988765544
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6e-30 Score=289.79 Aligned_cols=255 Identities=17% Similarity=0.302 Sum_probs=217.5
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 470 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v 470 (1093)
+.+|.+.|.+++|+|++++||+|+.|+.|+|||+..+. ......+.+|...|++++|+++ ++ +|++++.||.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 67899999999999999999999999999999998432 2333467899999999999987 77 8999999999999
Q ss_pred EECCCCc--eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEcc------
Q 001352 471 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 540 (1093)
Q Consensus 471 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~------ 540 (1093)
||+.+++ .+..+..|...|.+++|++..++.++++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999997 77888889999999999776447899999999999999998874 4456677888999999999
Q ss_pred -------CCCEEEEEecCCCCceeEEEEeCCCCe----eeeeeecccccCCCeEEEEEcCC---CCEEEEEeCCCcEEEE
Q 001352 541 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 606 (1093)
Q Consensus 541 -------d~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~dg~i~iw 606 (1093)
++.++++++. ++.|++||+.++. ....+.+|. ..|.+++|+|+ ++++++++.||.|++|
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 6999999986 6679999998764 345566666 89999999999 8999999999999999
Q ss_pred ECCCCc---eEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCce
Q 001352 607 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 657 (1093)
Q Consensus 607 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~ 657 (1093)
|+.++. .........+...+.+++|+|++++|++++.||.|++|++.....
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 999875 233333333456789999999999999999999999999985533
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6e-30 Score=289.80 Aligned_cols=260 Identities=13% Similarity=0.145 Sum_probs=216.0
Q ss_pred HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCC--ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEE
Q 001352 327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV 404 (1093)
Q Consensus 327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 404 (1093)
++.++.+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+ +.+.. +.+|...|.+++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~ 62 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVD 62 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEE-------------------ECCCSSCEEEEE
T ss_pred ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeE-------------------ecCCCCcEEEEE
Confidence 4567899999999999999998 5899999999999999843 33322 678999999999
Q ss_pred ECCC--CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEEEECCCCc--e
Q 001352 405 WSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--R 478 (1093)
Q Consensus 405 ~s~d--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~--~ 478 (1093)
|+|+ +++|++|+.|+.|++||+.+++. .....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. .
T Consensus 63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 63 WAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp ECCGGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCC
T ss_pred eCCCCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCcee
Confidence 9987 99999999999999999998752 133367789999999999999 88 89999999999999999874 4
Q ss_pred eEEeecCCCCeEEeeecccC-----------CccEEEEEecCCeEEEEEcCCCCce----EEecCCCCceEEEEEccC--
Q 001352 479 TYSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSAN-- 541 (1093)
Q Consensus 479 ~~~~~~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~v~~~~~s~d-- 541 (1093)
...+.+|...|.+++|++.. ++.++++++.||.|++||++..... ..+..|...|.+++|+|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence 45677899999999997742 5789999999999999999876543 466778889999999999
Q ss_pred -CCEEEEEecCCCCceeEEEEeCCCCeee--eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001352 542 -GRRLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 613 (1093)
Q Consensus 542 -~~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 613 (1093)
++++++++. ++.|++||+.++... ........+...+.+++|+|++++|++++.||.|++|++..+..
T Consensus 220 ~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 220 LRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp SSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred CCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 899999986 667999999987421 11111112347899999999999999999999999999985543
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.6e-29 Score=291.55 Aligned_cols=275 Identities=16% Similarity=0.241 Sum_probs=238.4
Q ss_pred cCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEEC
Q 001352 394 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 473 (1093)
Q Consensus 394 ~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~ 473 (1093)
.+|...|.+++| ++++|++|+.||.|++||+.+++... .+.+|...|.+++| +++ ++++|+.||+|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 357788998887 89999999999999999999987554 68899999999999 667 8999999999999999
Q ss_pred CCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce---EEecCCCCceEEEEEccCCCEEEEEec
Q 001352 474 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT 550 (1093)
Q Consensus 474 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~ 550 (1093)
.+++.+..+.+|...|.+++|+ +..+++++.||.|++||+.+.... ..+..+...|.++++ +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999999999999999999984 358999999999999999987765 567788889999998 7889999886
Q ss_pred CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352 551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 630 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 630 (1093)
++.|++||+.+++.+..+.+|. ..+.++.++ ++++++|+.||.|++||+.+++.+..+..+. ..|.+++
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~ 343 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIR 343 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEE
T ss_pred ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEE
Confidence 6779999999999999999887 889999984 6899999999999999999999999987654 4588888
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCc---------eeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCcc
Q 001352 631 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 701 (1093)
Q Consensus 631 ~s~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 701 (1093)
| ++.++++++.||.|++||+.++. .+..+.+|...|.++++. +++
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------------~~~ 397 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EFQ 397 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SSC
T ss_pred e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC------------------------CCE
Confidence 8 78999999999999999987654 677778888888777663 677
Q ss_pred ceeecccccceecceeecc
Q 001352 702 EISVEAENKSEVEKPLFAR 720 (1093)
Q Consensus 702 l~s~~~d~~i~~w~~~~~~ 720 (1093)
+++++.||.|++|++....
T Consensus 398 l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEECCSSSEEEEEC-----
T ss_pred EEEEeCCCEEEEEECCCCC
Confidence 9999999999999987543
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=285.86 Aligned_cols=290 Identities=17% Similarity=0.152 Sum_probs=238.1
Q ss_pred ecCCCCCeEEEEECCC---CCEEEEEEcCCEEEEEEccC-CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcE
Q 001352 393 VRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 468 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~d---g~~las~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i 468 (1093)
+.+|.+.|.+++|+|+ |++|++|+.||.|++||+.+ +..+ ...+.+|...|++++|+|+++ +|++++.||.|
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v 110 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA 110 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence 7789999999999999 69999999999999999997 4322 235778999999999999999 89999999999
Q ss_pred EEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352 469 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 548 (1093)
Q Consensus 469 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 548 (1093)
++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+.+ ..++++
T Consensus 111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~ 186 (368)
T 3mmy_A 111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA 186 (368)
T ss_dssp EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence 999999998776 5569999999999777788999999999999999999988888777665 555555554 466666
Q ss_pred ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCE----EEEEeCCCcEEEEECCCC---ceEEEEecCC
Q 001352 549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAGG 621 (1093)
Q Consensus 549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~~ 621 (1093)
+. ++.+.+|++............. ....+.++.+.++... +++++.||.|++||+... .....+..+.
T Consensus 187 ~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 261 (368)
T 3mmy_A 187 TA----ERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR 261 (368)
T ss_dssp EG----GGCEEEEECSSSCEEEEECCCS-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred eC----CCcEEEEEeccccchhhhcccc-ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence 65 5669999998765433222111 1245666666665544 999999999999999987 5566665543
Q ss_pred CC----------CCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEe
Q 001352 622 GL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 691 (1093)
Q Consensus 622 ~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 691 (1093)
.. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+.+++|+
T Consensus 262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----------------- 324 (368)
T 3mmy_A 262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN----------------- 324 (368)
T ss_dssp EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC-----------------
T ss_pred cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC-----------------
Confidence 21 158999999999999999999999999999999999999999999999996
Q ss_pred cCCCCCCCccceeecccccceeccee
Q 001352 692 NEDPKEDVKPEISVEAENKSEVEKPL 717 (1093)
Q Consensus 692 ~~~~s~d~~~l~s~~~d~~i~~w~~~ 717 (1093)
|+++++++++.|+..+.|++.
T Consensus 325 -----~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 325 -----HNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp -----TTSSCEEEEECCCSTTCGGGC
T ss_pred -----CCCCeEEEEeccccccccccc
Confidence 788899999999887777754
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.9e-29 Score=280.47 Aligned_cols=259 Identities=13% Similarity=0.206 Sum_probs=217.8
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcc-cceEEeccccccEEEEEeeC--CCCcEEEEEEcCCCcE
Q 001352 392 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTI 468 (1093)
Q Consensus 392 ~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i 468 (1093)
++.+|.+.|.+++|+|++++||+|+.||.|++||+.++... .....+.+|...|++++|+| |++ +|++++.||.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 37799999999999999999999999999999999976532 33446779999999999999 577 89999999999
Q ss_pred EEEECCCC---------ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec------------
Q 001352 469 KVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------------ 527 (1093)
Q Consensus 469 ~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------ 527 (1093)
++||+.++ +.+..+.+|...|.+++|++..++.++++++.||.|++||+++......+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999987 567888899999999999776337899999999999999998776443221
Q ss_pred -CCCCceEEEEEccC---CCEEEEEecCCCCceeEEEEeCCCCee--eeeeecccccCCCeEEEEEcCCC----CEEEEE
Q 001352 528 -APGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILAA 597 (1093)
Q Consensus 528 -~~~~~v~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~----~~l~~~ 597 (1093)
.+...+.+++|+|+ +..+++++. ++.+.+|+...+.. +..+.+|. ..|.+++|+|++ ++++++
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEEE
Confidence 45668999999997 899999876 66788888777765 55666666 899999999998 799999
Q ss_pred eCCCcEEEEECCCC----------------------------------------------ceEEEEecCCCCCCCceEEE
Q 001352 598 GDDHVIKIWDMNKV----------------------------------------------QLLTTIDAGGGLPENPRICF 631 (1093)
Q Consensus 598 ~~dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~v~~ 631 (1093)
+.||.|++||+.++ +.+..+..+ ...|.+++|
T Consensus 237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~ 314 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH--NGEVWSVSW 314 (351)
T ss_dssp ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT--SSCEEEEEE
T ss_pred cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc--cccEEEEEE
Confidence 99999999999875 344445444 456999999
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCceeeec
Q 001352 632 NKNGTLLAVIANENRIKILETPESNSVDAA 661 (1093)
Q Consensus 632 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 661 (1093)
+|++++|++++.||.|++|++.++..+..+
T Consensus 315 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 315 NLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp CSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred cCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 999999999999999999999987655443
No 109
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.3e-29 Score=280.45 Aligned_cols=285 Identities=10% Similarity=0.000 Sum_probs=239.0
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
..+|.+.|.+++|+|++++|++++.|+.|++||+.+++.......+.+|...|.+++|+|+++. ++++++.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999987633333356689999999999999872 388899999999999
Q ss_pred C-CCCceeEEeec--CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC---------CCceEEecCCCCceEEEEEcc
Q 001352 473 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA 540 (1093)
Q Consensus 473 ~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~s~ 540 (1093)
+ .+++. ..+.+ |...|.+++|++ +.++++++.||.|++||+++ ......+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77755 77888 999999999976 57999999999999999987 55554454 777899999999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCC-Ceee--eeeecccccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----
Q 001352 541 NGRRLFSCGTSKEGESFLVEWNESE-GAIK--RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV----- 611 (1093)
Q Consensus 541 d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~--~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~i~iwd~~~~----- 611 (1093)
++ +++++. ++.|++||+.+ +... .....+. ..+.+++|+| +++++++++.||.|++|++...
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 88 777765 66799999988 5432 2233333 7899999999 9999999999999999999887
Q ss_pred -ceEEEEecCCC-------CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccc-cccceeeeecCCCceeee
Q 001352 612 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA 682 (1093)
Q Consensus 612 -~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~ 682 (1093)
+....+..+.. ...|.+++|+|++++|++++.||.|++||+.+++.+..+.+| ...|.+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~---------- 301 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA---------- 301 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE----------
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec----------
Confidence 77777776643 336899999999999999999999999999999999888888 88887665
Q ss_pred eccCCceEecCCCCCCCccceeeccccc-ceecce
Q 001352 683 GIANGSVSVNEDPKEDVKPEISVEAENK-SEVEKP 716 (1093)
Q Consensus 683 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~-i~~w~~ 716 (1093)
++++++++++.|++ .+.|..
T Consensus 302 --------------~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 302 --------------CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp --------------ECSSEEEEEEECTHHHHCSSS
T ss_pred --------------CCCCeEEEEecCCcccccccc
Confidence 25778999999998 666663
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-28 Score=282.96 Aligned_cols=305 Identities=11% Similarity=-0.006 Sum_probs=234.0
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCc---eeEEeeeeee---eccc---------------------------
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ---KLFIRNFKVW---DIGA--------------------------- 383 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~---~~~~~~~~~~---~~~~--------------------------- 383 (1093)
++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.......- ....
T Consensus 6 p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 6 PLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 899999999999 45554 56899999999998 4433211000 0000
Q ss_pred -----ccceeeeeeecCCCCCeEEEEECCCCCEE-EEEEcCCEEEEEEcc--CCCcccceEEeccccccEEEEEeeCCCC
Q 001352 384 -----CSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLAFSAPCK 455 (1093)
Q Consensus 384 -----~~~~~~~~~~~~h~~~V~~v~~s~dg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~ 455 (1093)
...........+|.+.|.+++|+|+|++| |+++.|+.|++||+. +++.+..+. ...|...|++++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcCCCC
Confidence 00000111134677789999999999996 889999999999999 776655321 136778999999999999
Q ss_pred cEEEEEEcCCCcEEEEECCCCceeE----EeecCCCCeEEeeeccc-CCccEEEEEecCCeEEEEEcCCCCceEE-ecCC
Q 001352 456 QISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARVD-YDAP 529 (1093)
Q Consensus 456 ~l~l~s~~~d~~i~vwd~~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~ 529 (1093)
+|++++.|+.|++|++.+++... .+.+|...|.+++|++. ..+.+|++++.|+.|++||+.+...... ...|
T Consensus 163 --~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 163 --TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp --EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred --EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence 89999999999999999887654 78899999999999775 2268999999999999999998887776 5578
Q ss_pred CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc----------------------ccCCCeEEEEE
Q 001352 530 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQHNSVSVVHF 587 (1093)
Q Consensus 530 ~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------------------~~~~~v~~v~~ 587 (1093)
...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. .....+..++|
T Consensus 241 ~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 241 KHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp SSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred CCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 8999999999 9999999986 6789999999999888876431 12356899999
Q ss_pred cCCCCEEEEEe-CCCcEEEEEC--CCC---ceEEEEecCCCCCCCceEEEecCCCEEEEEEC------CCeEEEEEcCC
Q 001352 588 DTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPE 654 (1093)
Q Consensus 588 ~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iw~~~~ 654 (1093)
+|+++++++++ .++.|++|++ .++ +.+..+..+ ..+.+++|+|++.++++++. +..|.+|.+..
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99999999998 8999999999 555 566666655 45899999996533333332 45578887653
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1e-28 Score=275.33 Aligned_cols=283 Identities=13% Similarity=0.120 Sum_probs=217.0
Q ss_pred HHHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 327 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 327 ~~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
.+.++.+|.+.|++++|||||+ +||+|+.++ ++|||+.+++..... +...+..++++
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~ 67 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRML 67 (355)
T ss_dssp --------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEEC
T ss_pred CccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEc
Confidence 4456688999999999999998 588888765 789999987665431 12258889999
Q ss_pred CCCCEEE-EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC-ceeEEeec
Q 001352 407 PDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG 484 (1093)
Q Consensus 407 ~dg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~-~~~~~~~~ 484 (1093)
+++++++ +++.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+ .|+.|++||+.++ +.+..+..
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc
Confidence 9998885 56778999999999987655 443 67799999999864 3333 3789999999998 77777665
Q ss_pred CCCCeEEeeecccCCccEEEE--EecCCeEEEEEcCCCC----------------ceEEecCCCCceEEEEEccCCCEEE
Q 001352 485 HGAPVYSLCPHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRLF 546 (1093)
Q Consensus 485 h~~~v~~~~~~~~~~~~~l~s--~~~dg~i~vwd~~~~~----------------~~~~~~~~~~~v~~~~~s~d~~~l~ 546 (1093)
+...+++++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|+
T Consensus 139 ---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~ 211 (355)
T 3vu4_A 139 ---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVA 211 (355)
T ss_dssp ---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEE
T ss_pred ---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEE
Confidence 333444543 35555 6899999999998765 1577889999999999999999999
Q ss_pred EEecCCCCcee-EEEEeCCCCeeeeeee-c-ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--E-----
Q 001352 547 SCGTSKEGESF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T----- 616 (1093)
Q Consensus 547 ~~~~~~~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~----- 616 (1093)
+++. ++. |++||+.+++.+..+. + |. ..|.+++|+|++++|++++.|++|++||+..+.... .
T Consensus 212 s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~ 284 (355)
T 3vu4_A 212 TCSQ----DGTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI 284 (355)
T ss_dssp EEET----TCSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred EEeC----CCCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence 9986 777 9999999999999998 5 66 899999999999999999999999999997653211 1
Q ss_pred -------------EecC-CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 617 -------------IDAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 617 -------------~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
+... ........++|+++++++++++.||.+++|++..+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0011 11122467999999999999999999999997643
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=2.5e-27 Score=269.47 Aligned_cols=280 Identities=11% Similarity=0.102 Sum_probs=228.3
Q ss_pred ceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE-EEEEcCCEEEEEEc
Q 001352 348 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAY 426 (1093)
Q Consensus 348 ~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l-as~~~d~~i~iwd~ 426 (1093)
++++++++.|+.|++||+.+++.+.. +.+| ..+.+++|+|+|++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 35899999999999999999987764 3344 458999999999987 56668999999999
Q ss_pred cCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEE-EE
Q 001352 427 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FS 505 (1093)
Q Consensus 427 ~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s 505 (1093)
.+++.+. .+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+ ..+.+++|++ +++.+ ++
T Consensus 62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEE
T ss_pred CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEE
Confidence 9987554 444444 8999999999994 3466777899999999999998888754 4678888855 55666 78
Q ss_pred EecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEE
Q 001352 506 ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV 585 (1093)
Q Consensus 506 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v 585 (1093)
++.++.|++||+.+++....+..+ ..+..++|+|+++++++++. .++.|++||+.+++....+..+ ..+.++
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~ 205 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGI 205 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccce
Confidence 888999999999988777766654 45689999999998865432 2667999999999888777643 478999
Q ss_pred EEcCCCCEEEEEe---CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE-EEEECCCeEEEEEcCCCceeeec
Q 001352 586 HFDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAA 661 (1093)
Q Consensus 586 ~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~ 661 (1093)
+|+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+
T Consensus 206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 9999999999987 78999999999999988887653 36889999999987 56678999999999998877766
Q ss_pred ccccc
Q 001352 662 GVLSD 666 (1093)
Q Consensus 662 ~~~~~ 666 (1093)
..+..
T Consensus 283 ~~~~~ 287 (391)
T 1l0q_A 283 AVGKN 287 (391)
T ss_dssp ECSSS
T ss_pred ECCcC
Confidence 65443
No 113
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-29 Score=308.45 Aligned_cols=260 Identities=13% Similarity=0.155 Sum_probs=212.4
Q ss_pred HHhhccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 328 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 328 ~~~l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
..++.+|.+.|++++|+|+|++ +++|+.||.|+|||+.++..... ..+.+|.++|.+++|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~ 63 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAH 63 (753)
T ss_dssp ------CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECC
T ss_pred eeecccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecC
Confidence 4578899999999999999995 89999999999999985432211 11678999999999999
Q ss_pred C--CCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEEEECCCCc--eeEE
Q 001352 408 D--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTYS 481 (1093)
Q Consensus 408 d--g~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~vwd~~~~~--~~~~ 481 (1093)
+ +++|++|+.||.|++||+.+++. .....+.+|...|++++|+|+ ++ .+++|+.||.|++||+.++. ....
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~ 140 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII 140 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeE
Confidence 8 99999999999999999998752 233367789999999999999 88 89999999999999998873 4556
Q ss_pred eecCCCCeEEeeecccC-----------CccEEEEEecCCeEEEEEcCCCC----ceEEecCCCCceEEEEEccC---CC
Q 001352 482 FEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN---GR 543 (1093)
Q Consensus 482 ~~~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~s~d---~~ 543 (1093)
+.+|...|.+++|++.. ++.++++|+.||.|++||+++.. ....+..|...|.+++|+|+ ++
T Consensus 141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~ 220 (753)
T 3jro_A 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220 (753)
T ss_dssp EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence 78899999999997742 57899999999999999998874 34466788999999999999 89
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeee--eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001352 544 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 612 (1093)
Q Consensus 544 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~ 612 (1093)
++++++. ++.|++||+.++... ........+...|.+++|+|+++++++++.||.|++|++.++.
T Consensus 221 ~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 221 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999986 667999999887421 1111112234789999999999999999999999999998644
No 114
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=2.4e-28 Score=278.65 Aligned_cols=286 Identities=13% Similarity=0.143 Sum_probs=233.0
Q ss_pred CCeEEEEECCCCCEEE-EEEcCCEEEEEEccCCC-cccceEEeccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECC
Q 001352 398 VSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAV 474 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~la-s~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~ 474 (1093)
.....++++|+...++ +++.+|.|+||++.... .......+.+|.+.|++++|+| +++ +|++|+.||+|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455689999876554 57889999999996542 2233335779999999999999 777 89999999999999999
Q ss_pred CC-------ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe--cCCCCceEEEEEccCCCEE
Q 001352 475 TG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRL 545 (1093)
Q Consensus 475 ~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l 545 (1093)
++ +.+..+.+|...|.+++|++.. ..+|++++.||.|++||+.+++....+ ..+...|.+++|+|++++|
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 191 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence 88 6788999999999999996542 259999999999999999999888888 7889999999999999999
Q ss_pred EEEecCCCCceeEEEEeCCCCeeeeee-ecccccCCCeEEEEEcCCCCEEEEE---eCCCcEEEEECCCCce-EEEEecC
Q 001352 546 FSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDAG 620 (1093)
Q Consensus 546 ~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~v~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~ 620 (1093)
++++. ++.|++||+++++.+..+ .+|. ...+.++.|+|++.++++| +.|+.|++||+.+++. +......
T Consensus 192 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~ 265 (402)
T 2aq5_A 192 CTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD 265 (402)
T ss_dssp EEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred EEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence 99986 677999999999999888 6666 2348999999999999998 7999999999998765 3333322
Q ss_pred CCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCce-eeeccc--ccccceeeeecCCCceeeeeccCCceEecCCCC
Q 001352 621 GGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNS-VDAAGV--LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 696 (1093)
Q Consensus 621 ~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~-~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s 696 (1093)
+...+.+++|+|+++++++++ .||.|++|++.+++. +..+.. +...+.+++|+
T Consensus 266 -~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s---------------------- 322 (402)
T 2aq5_A 266 -TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM---------------------- 322 (402)
T ss_dssp -CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC----------------------
T ss_pred -CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe----------------------
Confidence 234589999999999997554 699999999998764 444443 44778888886
Q ss_pred CCCccceeecccccceeccee
Q 001352 697 EDVKPEISVEAENKSEVEKPL 717 (1093)
Q Consensus 697 ~d~~~l~s~~~d~~i~~w~~~ 717 (1093)
|++.++++ .++.+++|++.
T Consensus 323 p~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 323 PKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp CGGGSCGG--GTEEEEEEEEE
T ss_pred ccccccee--cceeEEEEEcC
Confidence 56666665 45689999976
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=8.7e-27 Score=264.93 Aligned_cols=328 Identities=11% Similarity=0.130 Sum_probs=253.4
Q ss_pred EEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCceEEE
Q 001352 458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 536 (1093)
Q Consensus 458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~ 536 (1093)
++++++.|+.|++||+.+++.+..+..|.. +.+++|++ ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 789999999999999999999999987754 88899855 55665 677799999999999888777776655 89999
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEE
Q 001352 537 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT 615 (1093)
Q Consensus 537 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~ 615 (1093)
+|+|+++++++++. .++.|++||+.+++.+..+..+ ..+.+++|+|+++++ ++++.++.|++||+.+++.+.
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 99999999877653 2567999999999988887754 368999999999988 577889999999999999988
Q ss_pred EEecCCCCCCCceEEEecCCCEE-EEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCC
Q 001352 616 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 694 (1093)
Q Consensus 616 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1093)
.+..+. .+..++|+|+++++ ++++.++.|++||+.+++....+.
T Consensus 153 ~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 197 (391)
T 1l0q_A 153 TVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------------------------------- 197 (391)
T ss_dssp EEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred EEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence 887653 36899999999887 566778999999987542211000
Q ss_pred CCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcc
Q 001352 695 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 774 (1093)
Q Consensus 695 ~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~ 774 (1093)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe----CCeEEEEEccCceeEEEECCCCCCeEEE
Q 001352 775 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSL 850 (1093)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l 850 (1093)
+...+.+++|+|+++++++++ ++.|++||+.+++.+..+..+. .+.++
T Consensus 198 ---------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 249 (391)
T 1l0q_A 198 ---------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGI 249 (391)
T ss_dssp ---------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEE
T ss_pred ---------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEE
Confidence 122355677788887777664 5789999999998888887654 57899
Q ss_pred EEcCCCCCEE-EEEeCCCeEEEEEcCCcceeeecccccCCeE---EEE------------EeCCC----------CEEEE
Q 001352 851 AFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLV------------FSDAL----------NILVS 904 (1093)
Q Consensus 851 ~~s~~d~~~l-asg~~dg~i~iwd~~~~~~~~~l~~h~~~V~---~l~------------~s~dg----------~~l~s 904 (1093)
+|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+. |+.+. ..+..
T Consensus 250 ~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~ 328 (391)
T 1l0q_A 250 AVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD 328 (391)
T ss_dssp EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE
T ss_pred EEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe
Confidence 9999 77766 6778899999999999998888876654421 122 33221 34666
Q ss_pred EeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE
Q 001352 905 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 954 (1093)
Q Consensus 905 ~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 954 (1093)
.+.|..+++|++..+.... . .-....|+++|.+.+.
T Consensus 329 ~~~~~~~~~W~~~~g~~~~------~--------~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 329 LSKDATEWKWDFGDGSSSK------K--------QNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCBSCSEEEEECSSSCEEC------S--------SSCEECCSSCEEEEEE
T ss_pred CCCCceEEEEECCCCcccC------c--------CCCeEEeCCCceEEEE
Confidence 6778899999998765211 0 1224678999998875
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.2e-27 Score=248.92 Aligned_cols=270 Identities=11% Similarity=0.058 Sum_probs=199.9
Q ss_pred EEEEEECCCeEEEEEcCCC---ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccccee
Q 001352 637 LLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 713 (1093)
Q Consensus 637 ~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~ 713 (1093)
.+++++. ..|++|+.... +.+.+...+..+|..+.+.|+..- |+...- |
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------~~~~~~-~---- 107 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN----------------------LVCVAL-G---- 107 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS----------------------CEEEEE-C----
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc----------------------eeeeee-c----
Confidence 4555554 79999999998 788889999999998888754322 211111 0
Q ss_pred cceeeccCccccccccCccccccceEEEEeecC----CceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCC
Q 001352 714 EKPLFARPSECQSLLLPSKVKANKISRLTYNNG----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 789 (1093)
Q Consensus 714 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~----g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1093)
.-+...|.+++++|+ ++.++.++.+ +.+|++
T Consensus 108 ------------------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l------------------------- 142 (356)
T 2w18_A 108 ------------------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL------------------------- 142 (356)
T ss_dssp ------------------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-------------------------
T ss_pred ------------------cccccceEEEEECCCccccccEEEeCCCe--EEEEec-------------------------
Confidence 115568999999999 9988887744 555542
Q ss_pred CceeeccCCCCCCCCCeeEEEEccCCCEEEEEe---CCeEEEEEc-cCceeEEEECCCCCCeEEEEEcC--CCCCEEEEE
Q 001352 790 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIV-MTFKTILTIMPPSPTATSLAFNP--HDNNVIAIG 863 (1093)
Q Consensus 790 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~s~--~d~~~lasg 863 (1093)
++|+++.++. ++.|++|++ .+|+.+..+..|...++.++|++ .++.+||+|
T Consensus 143 -----------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg 199 (356)
T 2w18_A 143 -----------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT 199 (356)
T ss_dssp -----------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred -----------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence 3566666654 788999998 45788788888888888888887 467899999
Q ss_pred eCCCeEEEEEcCCcceeeeccccc---CCeEEEEEeCCCCEE------------EEEeCCCcEEEEeCCCCceeeeeeee
Q 001352 864 MDDSTILIYNARSSEVISKLEGHS---KRVTGLVFSDALNIL------------VSSGGDAQIFVWDVDGWGIQTCRSLQ 928 (1093)
Q Consensus 864 ~~dg~i~iwd~~~~~~~~~l~~h~---~~V~~l~~s~dg~~l------------~s~s~dg~i~iwd~~~~~~~~~~~~~ 928 (1093)
+.|++|+|||+.+|+++.++.+|. ..+.+++|||||+++ ++++.|++|++||..+++......+.
T Consensus 200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~ 279 (356)
T 2w18_A 200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC 279 (356)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee
Confidence 999999999999999999998754 367788999999886 66888999999999997754433323
Q ss_pred cCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCE-EEEEEccCCCEEEEEeCCCcEEEE
Q 001352 929 TPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPI-SQATFSCDCRMVFTSFVDGTLSIH 1006 (1093)
Q Consensus 929 ~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v-~~~~fs~dg~~l~t~~~dg~v~vw 1006 (1093)
.+.+|.. .+ +..+.++.++|+ +.|++|+|||+.+|+++.. +.+|...+ ..++|||||++|++|+.|++|+||
T Consensus 280 ~p~Gh~~---~~--lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~t-L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 280 LPPGQAG---RF--LEGDVKDHCAAAILTSGTIAIWDLLLGQCTAL-LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp CCTTCCC---CE--EEEEEETTEEEEEETTSCEEEEETTTCSEEEE-ECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred ccCCCcc---ee--EccccCCCEEEEEcCCCcEEEEECCCCcEEEE-ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 3445543 23 334444888888 4799999999999999988 45676554 468999999999999999999999
Q ss_pred Ec
Q 001352 1007 EA 1008 (1093)
Q Consensus 1007 d~ 1008 (1093)
|+
T Consensus 354 d~ 355 (356)
T 2w18_A 354 HY 355 (356)
T ss_dssp EE
T ss_pred cC
Confidence 96
No 117
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-28 Score=303.41 Aligned_cols=254 Identities=17% Similarity=0.297 Sum_probs=215.3
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCC--CCcEEEEEEcCCCcEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 470 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d--~~~l~l~s~~~d~~i~v 470 (1093)
+.+|.++|++++|+|+|++|++|+.||+|+|||+.++. ......+.+|.++|++++|+++ ++ ++++|+.||+|++
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~v 81 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 81 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEEE
Confidence 77899999999999999999999999999999998543 2334468899999999999988 77 8999999999999
Q ss_pred EECCCCc--eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEcc------
Q 001352 471 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 540 (1093)
Q Consensus 471 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~------ 540 (1093)
||+.+++ .+..+.+|...|.+++|++..++.++++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999987 77888899999999999876447899999999999999998773 4456677888999999999
Q ss_pred -------CCCEEEEEecCCCCceeEEEEeCCCC----eeeeeeecccccCCCeEEEEEcCC---CCEEEEEeCCCcEEEE
Q 001352 541 -------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 606 (1093)
Q Consensus 541 -------d~~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~v~~~~~---~~~l~~~~~dg~i~iw 606 (1093)
++..+++++. ++.|++||+.++ .....+.+|. ..|.+++|+|+ ++++++++.||.|++|
T Consensus 162 ~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp -----CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred cccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 5899999986 667999999877 4556667766 89999999999 8999999999999999
Q ss_pred ECCCCceE---EEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCc
Q 001352 607 DMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 656 (1093)
Q Consensus 607 d~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 656 (1093)
|+.+++.. .......+...|.+++|+|+|+++++++.||.|++|++....
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99886422 112222344568999999999999999999999999998653
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.7e-26 Score=266.49 Aligned_cols=355 Identities=14% Similarity=0.092 Sum_probs=260.0
Q ss_pred CCCCeEEEEECCCCCEEEEEEcC-CEEEEEEccCCCcccceEEeccccccEEEEE---eeCCCCcEEEE-----------
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLA---FSAPCKQISVI----------- 460 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~---~s~d~~~l~l~----------- 460 (1093)
....|..+.++|....++..... ...+++.. .....+..++ |+|+++.++++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM-------------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYR 92 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEE-------------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEE
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeec-------------ccCCccEEEEEeeccCCCcEEEEEEccccCcceee
Confidence 44567777888865444433211 11222221 1233455666 77766532222
Q ss_pred -EEcCCC--cEEEEECCCC--ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE-----EecCCC
Q 001352 461 -TCGDDK--TIKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-----DYDAPG 530 (1093)
Q Consensus 461 -s~~~d~--~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~ 530 (1093)
+++.++ .|..||..++ +.+..+..+. .+.+++|++ ++.++++++.++.|++||+.+++... .+..+.
T Consensus 93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 93 IRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp ESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred ecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence 233444 4444454445 5566666554 455888866 66788888899999999999887766 334667
Q ss_pred CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 001352 531 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN 609 (1093)
Q Consensus 531 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~ 609 (1093)
..+.+++|+++++++++++. ++.|++||+.+++.+..+..+. ..+.+++|+|+++.+++++ .++.|++||+.
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~----d~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 242 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQ----ANAVHVFDLKTLAYKATVDLTG---KWSKILLYDPIRDLVYCSNWISEDISVIDRK 242 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGG----GTEEEEEETTTCCEEEEEECSS---SSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceeEEEEcCCCEEEEEECC----CCEEEEEECCCceEEEEEcCCC---CCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence 78999999999999998875 6779999999999988888766 7899999999999886654 89999999999
Q ss_pred CCceEEEEecCCCCCCCceEEEecCCCEEEEEE--------CCCeEEEEEcCCCceeeecccccccceeeeecCCCceee
Q 001352 610 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--------NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 681 (1093)
Q Consensus 610 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 681 (1093)
+++.+..+..+. .+.+++|+|+++++++++ .|+.|++||+.+++.....
T Consensus 243 ~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-------------------- 299 (433)
T 3bws_A 243 TKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-------------------- 299 (433)
T ss_dssp TTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--------------------
T ss_pred CCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec--------------------
Confidence 999888776543 378999999999999887 3667777776543111000
Q ss_pred eeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEE
Q 001352 682 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 761 (1093)
Q Consensus 682 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~v 761 (1093)
T Consensus 300 -------------------------------------------------------------------------------- 299 (433)
T 3bws_A 300 -------------------------------------------------------------------------------- 299 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE-e-CCeEEEEEccCceeEEE
Q 001352 762 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILT 839 (1093)
Q Consensus 762 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~-dg~i~iwd~~~~~~~~~ 839 (1093)
.+...+.+++|+|+++.++++ + ++.|++||+.+++.+..
T Consensus 300 ---------------------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 300 ---------------------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp ---------------------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ---------------------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 012235567888888755444 3 68999999999988887
Q ss_pred ECCCCCCeEEEEEcCCCCCEEEEEeC---------------CCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEE
Q 001352 840 IMPPSPTATSLAFNPHDNNVIAIGMD---------------DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 904 (1093)
Q Consensus 840 ~~~~~~~i~~l~~s~~d~~~lasg~~---------------dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s 904 (1093)
+. +...+.+++|+| ++++|++++. ||.|++||+.+++.+..+.. ...+.+++|+|||++|++
T Consensus 341 ~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 341 IP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp EE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEE
T ss_pred ec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEE
Confidence 76 677899999999 8888888876 57999999999998888876 457999999999999998
Q ss_pred EeC-CCcEEEEeCCC
Q 001352 905 SGG-DAQIFVWDVDG 918 (1093)
Q Consensus 905 ~s~-dg~i~iwd~~~ 918 (1093)
++. |+.|++|+++.
T Consensus 418 ~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 418 SDFLDHQIRVYRRDG 432 (433)
T ss_dssp EETTTTEEEEEEETT
T ss_pred EECCCCeEEEEEecC
Confidence 875 99999999874
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=9.5e-27 Score=268.69 Aligned_cols=300 Identities=12% Similarity=0.038 Sum_probs=229.8
Q ss_pred CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceE--EeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352 398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 475 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 475 (1093)
..+.+++|+|++.++++++.++.|++||+.+++...... .+.+|...|.+++|++++. ++++++.|+.|++||+.+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence 456699999988888888888999999999987553211 2347889999999999998 899999999999999999
Q ss_pred CceeEEeecCCCCeEEeeecccCCccEE-EEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC-
Q 001352 476 GSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE- 553 (1093)
Q Consensus 476 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~- 553 (1093)
++.+..+..|...+.+++|++ ++..+ ++++.|+.|++||+++++....+.. ...+.+++|+|+|+++++++....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~ 277 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN 277 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence 999999999999999999965 55566 4555899999999998777666655 446899999999999998874321
Q ss_pred ---CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceEEEEecCCCCCCCceE
Q 001352 554 ---GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 629 (1093)
Q Consensus 554 ---~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 629 (1093)
.++.|++||+.+++.+..+. +. ..+..++|+|+++.++ +++.++.|++||+.+++.+..+... ..+.++
T Consensus 278 ~~~~dg~i~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~ 350 (433)
T 3bws_A 278 QESGGGRLGIYSMDKEKLIDTIG-PP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTI 350 (433)
T ss_dssp TCSCCEEEEEEETTTTEEEEEEE-EE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEE
T ss_pred cccCCCeEEEEECCCCcEEeecc-CC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeE
Confidence 36789999999998876653 33 4788999999998664 5689999999999999988888643 347899
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001352 630 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 709 (1093)
Q Consensus 630 ~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~ 709 (1093)
+|+|+|+++++++.+.. .....++++++.||
T Consensus 351 ~~s~dg~~l~~~~~~~~-------------------------------------------------~~~~~~~~~g~~dg 381 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPN-------------------------------------------------HPTEGYLKKGLVLG 381 (433)
T ss_dssp EECTTSSEEEEEECCCC-------------------------------------------------CTTTCTTSCCSSCC
T ss_pred EEcCCCCEEEEEecCCC-------------------------------------------------ccccccccccccce
Confidence 99999999988876320 01123344555555
Q ss_pred cceecceeeccCccccccccCccccccceEEEEeecCCceEEEeec-cceeEEeeec
Q 001352 710 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWP 765 (1093)
Q Consensus 710 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~v~vw~~~ 765 (1093)
.+.+||....+..... .....+.+++|+|+|+.+++++. ++.+++|++.
T Consensus 382 ~v~~~d~~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 382 KVYVIDTTTDTVKEFW-------EAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEEEETTTTEEEEEE-------ECSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEEEEECCCCcEEEEe-------cCCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 5555554322111110 02345788999999998888775 8999999864
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1e-27 Score=275.39 Aligned_cols=254 Identities=17% Similarity=0.249 Sum_probs=212.6
Q ss_pred hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCC----------CceeEEeeeeeeecccccceeeeeeecCCCCCe
Q 001352 331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS----------GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV 400 (1093)
Q Consensus 331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 400 (1093)
+.+|.+.|++++|+|++..++|+|+.||.|+|||+.+ ...+.. +.+|...|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v 184 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLR-------------------LRGHQKEG 184 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEE-------------------EECCSSCC
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEE-------------------ecCCCCCe
Confidence 4579999999999998555799999999999999986 233322 67899999
Q ss_pred EEEEECCCCC-EEEEEEcCCEEEEEEccCCCcc----cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352 401 NRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 475 (1093)
Q Consensus 401 ~~v~~s~dg~-~las~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 475 (1093)
.+++|+|++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. ++++++.|+.|++||+.+
T Consensus 185 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~ 263 (430)
T 2xyi_A 185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRN 263 (430)
T ss_dssp CCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTC
T ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence 9999999998 9999999999999999885432 223457789999999999995444 899999999999999998
Q ss_pred C---ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCCCCceEEEEEccCCC-EEEEEec
Q 001352 476 G---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFSCGT 550 (1093)
Q Consensus 476 ~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~ 550 (1093)
+ +.+..+..|...|++++|++.. ..++++|+.||.|++||++. ......+..|...|.+++|+|+++ ++++++.
T Consensus 264 ~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~ 342 (430)
T 2xyi_A 264 NNTSKPSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 342 (430)
T ss_dssp SCSSSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET
T ss_pred CCCCcceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC
Confidence 7 5778888999999999997643 24799999999999999998 456778888999999999999996 5777765
Q ss_pred CCCCceeEEEEeCCC--------------CeeeeeeecccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Q 001352 551 SKEGESFLVEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 612 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~--------------~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 612 (1093)
++.|++||+.. .+.+..+.+|. ..|.+++|+|+++ .+++++.||.|++|++....
T Consensus 343 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 343 ----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp ----TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred ----CCcEEEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 66799999987 24555555655 8899999999999 88899999999999987543
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=3.7e-27 Score=262.76 Aligned_cols=296 Identities=13% Similarity=0.133 Sum_probs=215.1
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
..+|...|.+++|||||++||+|+.++ ++|||+.+++... . .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 467999999999999999999998776 7899998764332 2 22235788899988874 346788889999999
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC-CceEEecCCCCceEEEEEccCCCEEEEEecC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTS 551 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 551 (1093)
+.+++++..+. |...|.++++++ + .++++ .|+.|++||+.+. +....+.. ....+++++ .++++++..
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~ 156 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEF 156 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESS
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCC
Confidence 99999999887 677999999854 3 34443 5889999999887 54444433 444566777 667665221
Q ss_pred CCCceeEEEEeCCCCe----------------eeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCc-EEEEECCCCceE
Q 001352 552 KEGESFLVEWNESEGA----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLL 614 (1093)
Q Consensus 552 ~~~~~~i~iwd~~~~~----------------~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~ 614 (1093)
.++.|++||+.++. .+..+.+|. ..|.+++|+|++++|++|+.||+ |++||+.+++.+
T Consensus 157 --~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 157 --NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV 231 (355)
T ss_dssp --CTTCEEEEECCC------------------CCEEECCCS---SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred --cCcEEEEEECCCCCccccccccccccccCcccEEEEccC---CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 26679999999876 267777777 89999999999999999999998 999999999999
Q ss_pred EEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCcee--eeccc-----cccccee---eeecCCCceeeeec
Q 001352 615 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV--DAAGV-----LSDNLRK---LSVNPISTVTGAGI 684 (1093)
Q Consensus 615 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~-----~~~~i~~---~~~~~~~~~~~~~~ 684 (1093)
..+....+...|.+++|+|++++|++++.|++|++|++...... ..+.. ....... ..+.+. ...
T Consensus 232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 306 (355)
T 3vu4_A 232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD-----KHV 306 (355)
T ss_dssp EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC-----TTC
T ss_pred EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC-----CCC
Confidence 99873223457999999999999999999999999999865321 11111 0000110 111100 000
Q ss_pred cCCceEecCCCCCCCccceeecccccceecceeecc
Q 001352 685 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 720 (1093)
Q Consensus 685 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~ 720 (1093)
....+++ +++++.+++++.||.+++|++....
T Consensus 307 ~~~~~a~----~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 307 RGCKIAW----ISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCEEEE----SSSSEEEEEETTTTEEEEEEEEEET
T ss_pred CceEEEE----eCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 1134455 6899999999999999999987543
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.9e-28 Score=268.56 Aligned_cols=273 Identities=10% Similarity=0.061 Sum_probs=215.1
Q ss_pred eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC
Q 001352 339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 418 (1093)
Q Consensus 339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d 418 (1093)
....+.+|++ ++++|+.||+|++||+.+++.+.... ...|.+++|+|+ +++++.|
T Consensus 40 ~~~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~---------------------~~~v~~~~~~~~---~~s~s~D 94 (343)
T 3lrv_A 40 LNKSMYYDKW-VCMCRCEDGALHFTQLKDSKTITTIT---------------------TPNPRTGGEHPA---IISRGPC 94 (343)
T ss_dssp ECSSSSEEEE-EEEEEEETTEEEEEEESSSSCEEEEE---------------------EECCCTTCCCCS---EEEECST
T ss_pred hhhhhcCCCC-EEEEECCCCcEEEEECCCCcEEEEEe---------------------cCCceeeeeCCc---eEEecCC
Confidence 3445667887 69999999999999999998876421 356778889988 9999999
Q ss_pred CEEEEEEcc---------CCCcccceEEeccccccEEEEEeeC--CCCcEEEEEEcCCCcEEEEECCCCceeEEeec-CC
Q 001352 419 HIVQLYAYH---------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HG 486 (1093)
Q Consensus 419 ~~i~iwd~~---------~~~~~~~~~~~~~h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-h~ 486 (1093)
++|++|+.. +++.++. ...+|.+.|.+++|+| +++ ++++++.|++|++||+.+++.+..... |.
T Consensus 95 ~~i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 170 (343)
T 3lrv_A 95 NRLLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSD 170 (343)
T ss_dssp TEEEEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSS
T ss_pred CeEEEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCC
Confidence 999999765 3332221 1236778999999999 998 899999999999999999999776643 55
Q ss_pred CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce-EEecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352 487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 564 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 564 (1093)
..|.+++|+| ++.+|++|+.||.|++||+++.... ..+.. |...|.+++|+|+|.+|++++. + .|++||++
T Consensus 171 ~~i~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~----~-~v~iwd~~ 243 (343)
T 3lrv_A 171 VEYSSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD----Q-TVVCFDLR 243 (343)
T ss_dssp CCCCEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES----S-BEEEEETT
T ss_pred CceEEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC----C-eEEEEEcC
Confidence 6899999965 6789999999999999999998887 77777 8899999999999999999983 2 69999999
Q ss_pred CCeeeeeeecccccCCCe--EEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEEEecCCCCCCCceEEEec---CCCEE
Q 001352 565 EGAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLL 638 (1093)
Q Consensus 565 ~~~~~~~~~~~~~~~~~v--~~v~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l 638 (1093)
+++....+..+..+...+ .+++|+|+++++++++. |+.+++|++.+....... ..+..++|++ +...+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l 317 (343)
T 3lrv_A 244 KDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDM 317 (343)
T ss_dssp SSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEE
T ss_pred CCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCcccccccee
Confidence 988776665532222333 36999999999999988 999999999765543332 1255677777 88899
Q ss_pred EEEECCCeEEEEEcC
Q 001352 639 AVIANENRIKILETP 653 (1093)
Q Consensus 639 ~~~~~dg~i~iw~~~ 653 (1093)
++++.||.+.++-..
T Consensus 318 ~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 318 DVVCGDGGIAAILKT 332 (343)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEecCCceEEEEec
Confidence 999999999887544
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-27 Score=264.07 Aligned_cols=278 Identities=8% Similarity=0.047 Sum_probs=217.3
Q ss_pred EeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001352 449 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 528 (1093)
Q Consensus 449 ~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 528 (1093)
.+.+++. ++++|+.||+|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+...
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 4456677 89999999999999999999988886 466777777654 99999999999998642
Q ss_pred CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeee-cccccCCCeEEEEEcC--CCCEEEEEeCCCcEEE
Q 001352 529 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKI 605 (1093)
Q Consensus 529 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~v~~~~--~~~~l~~~~~dg~i~i 605 (1093)
.+.+|+..+++.++.+. +|. ..|.+++|+| +++++++++.||+|++
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSA---NEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCS---SCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCC---CCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 27788988888666665 443 7899999999 9999999999999999
Q ss_pred EECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCcee-eecccccccceeeeecCCCceeeeec
Q 001352 606 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV-DAAGVLSDNLRKLSVNPISTVTGAGI 684 (1093)
Q Consensus 606 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~ 684 (1093)
||+.+++.......+. ...+.+++|+|++.++++|+.||.|++||+.++... ..+.
T Consensus 154 wd~~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~---------------------- 210 (343)
T 3lrv_A 154 QSYEDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP---------------------- 210 (343)
T ss_dssp EESSSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC----------------------
T ss_pred EECCCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe----------------------
Confidence 9999999876664432 235899999999999999999999999998755221 0000
Q ss_pred cCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeee
Q 001352 685 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 764 (1093)
Q Consensus 685 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~ 764 (1093)
T Consensus 211 -------------------------------------------------------------------------------- 210 (343)
T 3lrv_A 211 -------------------------------------------------------------------------------- 210 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECC--
Q 001352 765 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP-- 842 (1093)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~-- 842 (1093)
.+|...|.+++|+|+|.+|++++++.|++||+.+++.+..+..
T Consensus 211 -----------------------------------~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~ 255 (343)
T 3lrv_A 211 -----------------------------------VDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYT 255 (343)
T ss_dssp -----------------------------------CCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCB
T ss_pred -----------------------------------ccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccc
Confidence 0166778888888888888888877889999888766554443
Q ss_pred -CCCCe--EEEEEcCCCCCEEEEEeC-CCeEEEEEcCCcceeeecccccCCeEEEEEeC---CCCEEEEEeCCCcEEEEe
Q 001352 843 -PSPTA--TSLAFNPHDNNVIAIGMD-DSTILIYNARSSEVISKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWD 915 (1093)
Q Consensus 843 -~~~~i--~~l~~s~~d~~~lasg~~-dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~---dg~~l~s~s~dg~i~iwd 915 (1093)
|...+ .+++|+| ++++|++++. |+.|++|++.++...... .++..++|++ +.+.+++++.|+.+.++-
T Consensus 256 ~~~~~~~~~~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 256 IPEFKTGTVTYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp C-----CCEEEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred cccccccceEEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 33333 4699999 8999999998 999999999766543332 5678889998 889999999999999886
Q ss_pred CCC
Q 001352 916 VDG 918 (1093)
Q Consensus 916 ~~~ 918 (1093)
...
T Consensus 331 ~~~ 333 (343)
T 3lrv_A 331 KTN 333 (343)
T ss_dssp ECS
T ss_pred ecC
Confidence 554
No 124
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.5e-27 Score=271.47 Aligned_cols=264 Identities=15% Similarity=0.097 Sum_probs=219.1
Q ss_pred CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEec--------------------------------------
Q 001352 398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-------------------------------------- 439 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------------------- 439 (1093)
.++.+++|+|||++|+++ .++.|++||+.+|+.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999976665 57789999999987211111222
Q ss_pred ----------------cccccEEEEEeeCCCCcEE-EEEEcCCCcEEEEECC--CCceeEEee--cCCCCeEEeeecccC
Q 001352 440 ----------------AHVGNVNDLAFSAPCKQIS-VITCGDDKTIKVWDAV--TGSRTYSFE--GHGAPVYSLCPHAKE 498 (1093)
Q Consensus 440 ----------------~h~~~v~~~~~s~d~~~l~-l~s~~~d~~i~vwd~~--~~~~~~~~~--~h~~~v~~~~~~~~~ 498 (1093)
+|.+.|++++|+|+++ + +++++.||.|++||+. +++.+..+. .|...|.+++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-- 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-- 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--
Confidence 3455799999999999 5 4899999999999999 899888886 5778999999955
Q ss_pred CccEEEEEecCCeEEEEEcCCCCceE----EecCCCCceEEEEEccC---CCEEEEEecCCCCceeEEEEeCCCCeeeee
Q 001352 499 NIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAIKRT 571 (1093)
Q Consensus 499 ~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 571 (1093)
++.+|++++.+|.|++|++.+..... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDK 235 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEE
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeee
Confidence 66899999999999999998776543 56678889999999999 999999986 56799999999988877
Q ss_pred -eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-----------------------CCCCCCc
Q 001352 572 -YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------GGLPENP 627 (1093)
Q Consensus 572 -~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~ 627 (1093)
+.+|. ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....+.
T Consensus 236 ~~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 236 WLFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp ECCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 44666 899999999 9999999999999999999999988887632 1123578
Q ss_pred eEEEecCCCEEEEEE-CCCeEEEEEc--CCC---ceeeecccccccceeeeecC
Q 001352 628 RICFNKNGTLLAVIA-NENRIKILET--PES---NSVDAAGVLSDNLRKLSVNP 675 (1093)
Q Consensus 628 ~v~~s~~~~~l~~~~-~dg~i~iw~~--~~~---~~~~~~~~~~~~i~~~~~~~ 675 (1093)
.++|+|+++++++++ .++.|++|++ ..+ ..+..+..+ ..+.+++|+|
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~ 364 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN 364 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC
Confidence 899999999999999 8999999999 555 556666666 7788888885
No 125
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=8.9e-27 Score=267.64 Aligned_cols=255 Identities=16% Similarity=0.310 Sum_probs=213.6
Q ss_pred eeeecCCCCCeEEEEECCC-CCEEEEEEcCCEEEEEEccCC-------CcccceEEeccccccEEEEEeeCCCCcEEEEE
Q 001352 390 TALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISVIT 461 (1093)
Q Consensus 390 ~~~~~~h~~~V~~v~~s~d-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s 461 (1093)
.....+|.+.|++++|+|+ +.+||+++.+|.|++||+.+. ........+.+|...|.+++|+|++.. +|++
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s 199 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLS 199 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEE
Confidence 3346679999999999997 789999999999999999862 112334477899999999999999876 6999
Q ss_pred EcCCCcEEEEECCCCce-------eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC---CceEEecCCCC
Q 001352 462 CGDDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGL 531 (1093)
Q Consensus 462 ~~~d~~i~vwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~ 531 (1093)
|+.||.|++||+.++.. ...+.+|...|.+++|++. ++.++++++.||.|++||+++. .....+..+..
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 99999999999988432 4567789999999999764 4579999999999999999987 46667778889
Q ss_pred ceEEEEEccCCC-EEEEEecCCCCceeEEEEeCCC-CeeeeeeecccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 001352 532 GCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDM 608 (1093)
Q Consensus 532 ~v~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~ 608 (1093)
.|.+++|+|++. .+++++. ++.|++||+++ +..+..+.+|. ..|.+++|+|+++ .+++++.||.|++||+
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~ 351 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWDL 351 (430)
T ss_dssp CEEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred CeEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence 999999999998 5667765 67799999998 56778888777 8999999999985 5888999999999999
Q ss_pred CC--------------CceEEEEecCCCCCCCceEEEecCCC-EEEEEECCCeEEEEEcCCC
Q 001352 609 NK--------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 655 (1093)
Q Consensus 609 ~~--------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~~ 655 (1093)
.. .+.+..+..+ ...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 352 SKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 87 2444444433 45699999999999 9999999999999998754
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=3e-26 Score=268.47 Aligned_cols=343 Identities=9% Similarity=0.082 Sum_probs=256.6
Q ss_pred EEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCceE
Q 001352 537 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL 614 (1093)
Q Consensus 537 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~ 614 (1093)
+++|++..++++.. ++.|.+||..+++++.++.... .+..++|+|+++++++++.|++|++||+ .+++.+
T Consensus 144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence 37888887777654 6779999999999999888543 3889999999999999999999999999 889888
Q ss_pred EEEecCCCCCCCceEEEec----CCCEEEEEEC-CCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCce
Q 001352 615 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 689 (1093)
Q Consensus 615 ~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 689 (1093)
..+.... .+..++|+| +|+++++++. +++|.+||..+.+.+..+..+...+....+
T Consensus 216 ~~i~~g~---~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~---------------- 276 (543)
T 1nir_A 216 AEIKIGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY---------------- 276 (543)
T ss_dssp EEEECCS---EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE----------------
T ss_pred EEEecCC---CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc----------------
Confidence 8887532 368999999 9999999885 899999999888776655422111100000
Q ss_pred EecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEE-eeccceeEEeeecCcc
Q 001352 690 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA-LASNGVHLMWRWPRND 768 (1093)
Q Consensus 690 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~-~~~dg~v~vw~~~~~~ 768 (1093)
.....+.++.+++++..+++ ...++.+.+|++....
T Consensus 277 -------------------------------------------~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 277 -------------------------------------------HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp -------------------------------------------ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred -------------------------------------------ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 02236788999997766554 4556899998865421
Q ss_pred cCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECC----
Q 001352 769 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP---- 842 (1093)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~---- 842 (1093)
. +....+ .+...+.+++|+|||+++++++ +++|.+||..+++++..+..
T Consensus 314 ~----------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 314 N----------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp S----------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred c----------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 1 110011 1344567899999999887765 68999999999999988764
Q ss_pred CCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-------cceeeecccccCCeEEEEEeCCCCEEEEEe-------C
Q 001352 843 PSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------G 907 (1093)
Q Consensus 843 ~~~~i~~l~~s~~d~~~lasg~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s-------~ 907 (1093)
|.+....+ ++|+++.+++++. .|++|.+||+.+ +++++++.+|.+.+..++|+|||++|++++ .
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 54444343 5774477788776 689999999998 889999999999999999999999999987 2
Q ss_pred CCcEEEEeCCCCcee-eeeeeecCCCcccCCCCceEEEEccCCCEEEEE------eCCeEEEEEcCCcceeeeee
Q 001352 908 DAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF 975 (1093)
Q Consensus 908 dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~------~d~~i~vwd~~~~~~~~~~~ 975 (1093)
+++|.+||+.+++.. ....+....+-......+..++|+|||+.++++ .++.|.|||..+++++..+.
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 679999999997754 211111100001112368999999999999874 26899999999999988754
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=6.8e-26 Score=265.50 Aligned_cols=345 Identities=11% Similarity=0.091 Sum_probs=247.2
Q ss_pred eecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeec-CCCCCeEEEEECCCCCEEEEEEcCCE
Q 001352 342 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSPDGSLLGVAYSKHI 420 (1093)
Q Consensus 342 ~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s~dg~~las~~~d~~ 420 (1093)
+|+|++. ++++++.|++|.+||..+++++.. +. ++. +.+++|||||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 4899996 789999999999999999998865 33 333 889999999999999999999
Q ss_pred EEEEEc--cCCCcccceEEeccccccEEEEEeeC----CCCcEEEEEEc-CCCcEEEEECCCCceeEEeecCCCCeEEee
Q 001352 421 VQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSA----PCKQISVITCG-DDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 493 (1093)
Q Consensus 421 i~iwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~----d~~~l~l~s~~-~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 493 (1093)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+||..+++++.++..+...+....
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7765444 454 445689999999 999 566666 589999999999999888764322111111
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee--e
Q 001352 494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR--T 571 (1093)
Q Consensus 494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~ 571 (1093)
++ +...+..+.++|++..++++.. +++.|.+||..+++.+. .
T Consensus 276 ~~---------------------------------~~~~v~~i~~s~~~~~~~vs~~---~~g~i~vvd~~~~~~l~~~~ 319 (543)
T 1nir_A 276 YH---------------------------------PEPRVAAIIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTS 319 (543)
T ss_dssp EE---------------------------------SCCCEEEEEECSSSSEEEEEET---TTTEEEEEECTTSSSCEEEE
T ss_pred cc---------------------------------cCCceEEEEECCCCCEEEEEEC---CCCeEEEEEecCCCcceeEE
Confidence 11 1225667888888777666543 36678899988765543 2
Q ss_pred eecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEE-EecC-CCEEEEEE-CCCeE
Q 001352 572 YQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKN-GTLLAVIA-NENRI 647 (1093)
Q Consensus 572 ~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~-~~~l~~~~-~dg~i 647 (1093)
+. + ...+..+.|+|+++++++++ .+++|.+||..+++++..+........-..+. ++|+ +..++++. .|++|
T Consensus 320 i~-~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V 395 (543)
T 1nir_A 320 IG-A---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSI 395 (543)
T ss_dssp EE-C---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE
T ss_pred ec-c---CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceE
Confidence 22 2 25678899999999887655 68999999999999998887532111112233 4676 55566654 57899
Q ss_pred EEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcccccc
Q 001352 648 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 727 (1093)
Q Consensus 648 ~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 727 (1093)
.+|+..+.. |..
T Consensus 396 ~v~d~~~~~-------~~~------------------------------------------------------------- 407 (543)
T 1nir_A 396 SLIGTDPKN-------HPQ------------------------------------------------------------- 407 (543)
T ss_dssp EEEECCTTT-------CTT-------------------------------------------------------------
T ss_pred EEEEeCCCC-------Cch-------------------------------------------------------------
Confidence 999987520 000
Q ss_pred ccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCee
Q 001352 728 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 807 (1093)
Q Consensus 728 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 807 (1093)
+...+ +.+.. .+...+.
T Consensus 408 ------~~~~~-----------------------------------------------------v~~l~----~~g~~~~ 424 (543)
T 1nir_A 408 ------YAWKK-----------------------------------------------------VAELQ----GQGGGSL 424 (543)
T ss_dssp ------TBTSE-----------------------------------------------------EEEEE----CSCSCCC
T ss_pred ------hcCeE-----------------------------------------------------EEEEE----cCCCCce
Confidence 00000 00000 1334456
Q ss_pred EEEEccCCCEEEEEe--------CCeEEEEEccCceeE-EEE--------CCCCCCeEEEEEcCCCCCEEEEEe-----C
Q 001352 808 CFALSKNDAYLFSAS--------GGVISLYIVMTFKTI-LTI--------MPPSPTATSLAFNPHDNNVIAIGM-----D 865 (1093)
Q Consensus 808 ~l~~s~dg~~la~~~--------dg~i~iwd~~~~~~~-~~~--------~~~~~~i~~l~~s~~d~~~lasg~-----~ 865 (1093)
.++++|||++|++++ +++|.+||+.+++.. ..+ ..+...+..++|+| +|+.|+++. .
T Consensus 425 ~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~ 503 (543)
T 1nir_A 425 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKND 503 (543)
T ss_dssp CEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTS
T ss_pred EEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCC
Confidence 678888888888876 468999999998877 443 35567899999999 888887663 4
Q ss_pred CCeEEEEEcCCcceeeecccc
Q 001352 866 DSTILIYNARSSEVISKLEGH 886 (1093)
Q Consensus 866 dg~i~iwd~~~~~~~~~l~~h 886 (1093)
++.|.|||..+++++.+++.+
T Consensus 504 ~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 504 SSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp CCEEEEEETTTTEEEEEECCT
T ss_pred CCeEEEEECCCceEEEeecCC
Confidence 799999999999999988854
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.5e-26 Score=240.93 Aligned_cols=286 Identities=14% Similarity=0.080 Sum_probs=198.1
Q ss_pred Cceeeeec-CCCceEEEEEccCCcEEEEecCCC---ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352 337 SPMSMDFH-PVQHTLLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 412 (1093)
Q Consensus 337 ~V~~~~~s-pdg~~llasg~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l 412 (1093)
.+.++-|- +..+.+.+.......|++|+..++ +.+++ +.+|+.+|..++++||-.-|
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~~~ 101 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYT-------------------WHFAEVPVLQIVPVPDVYNL 101 (356)
T ss_dssp EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEE-------------------EECCSSCEEEECCCTTCCSC
T ss_pred EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEE-------------------EeccCceeEEEEEcCcccce
Confidence 45566664 444555555555689999999998 55554 55677777777777754433
Q ss_pred EEE-EcC-CEEEEEEccCC---CcccceEEeccccccEEEEEeeCCCCcEEEEEEc--CCCcEEEEEC-CCCceeEEeec
Q 001352 413 GVA-YSK-HIVQLYAYHGG---SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDA-VTGSRTYSFEG 484 (1093)
Q Consensus 413 as~-~~d-~~i~iwd~~~~---~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~-~~~~~~~~~~~ 484 (1093)
+.. -.+ ..-.++-+.-. +.+.+...-.+|...|..+ ++++ ++.+++ .|+.|++|++ .+|+.+..+.+
T Consensus 102 ~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~--lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~ 176 (356)
T 2w18_A 102 VCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRR--LVSSSGTLSDQQVEVMTFAEDGGGKENQFL 176 (356)
T ss_dssp EEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTTE--EEEEESSSTTCEEEEEEECTTSCEEEEEEE
T ss_pred eeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCCc--EEEecccCCCCcEEEEEECCCCceeeeecc
Confidence 222 111 01111111110 1111111223444445443 4555 444533 5899999998 55888888899
Q ss_pred CCCCeEEeeecc-cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC---ceEEEEEccCCCEEEEEec--------CC
Q 001352 485 HGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSANGRRLFSCGT--------SK 552 (1093)
Q Consensus 485 h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~s~d~~~l~~~~~--------~~ 552 (1093)
|...++.++|++ .+++.+|++++.|++|++||+.+++....+..+.. .+.+++|+|+|.++++++. ++
T Consensus 177 ~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSG 256 (356)
T 2w18_A 177 MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLR 256 (356)
T ss_dssp CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----------
T ss_pred CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeecc
Confidence 999999999988 67789999999999999999999999888876443 5778899999999876542 23
Q ss_pred CCceeEEEEeCCCCeeeeeee-----cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCc
Q 001352 553 EGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 627 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 627 (1093)
..++.|++||..+++.+..+. +|. ..+.+..++ +..+++++.|++|+|||+.+++++.++..|.. ..+.
T Consensus 257 s~D~tIklWd~~tgk~l~v~~~~~p~Gh~---~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~-~vvs 330 (356)
T 2w18_A 257 SPVFQLIVINPKTTLSVGVMLYCLPPGQA---GRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSD-QHWS 330 (356)
T ss_dssp -CCEEEEEEETTTTEEEEEEEECCCTTCC---CCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC---CCCC
T ss_pred CCCcEEEEEECCCCEEEEEEEeeccCCCc---ceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCC-CeEE
Confidence 458899999999999877652 443 344444443 78899999999999999999999999976543 2244
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEc
Q 001352 628 RICFNKNGTLLAVIANENRIKILET 652 (1093)
Q Consensus 628 ~v~~s~~~~~l~~~~~dg~i~iw~~ 652 (1093)
.++|+|||++|++|+.|++|+|||.
T Consensus 331 ~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEecC
Confidence 6899999999999999999999985
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.6e-27 Score=269.85 Aligned_cols=272 Identities=7% Similarity=-0.013 Sum_probs=178.8
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC-----
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP----- 407 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~----- 407 (1093)
.|...+....+++++. +||+|+.|++|+|||+.++.......+ ..+.+|.+.|.+++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~~~~~ 151 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADVYSAD 151 (393)
T ss_dssp ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEEECTT
T ss_pred ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEccccccc
Confidence 4555566667777776 699999999999999999876543221 12789999999999998
Q ss_pred ---CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352 408 ---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 484 (1093)
Q Consensus 408 ---dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 484 (1093)
||++||+|+.|++|+|||+.++..+. .+.+|..+|.+++|+|++.. +|++++.|++|++||+.+++.......
T Consensus 152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence 89999999999999999998875443 56679999999999999864 799999999999999999988776654
Q ss_pred CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEc-cCCCEEEEEecCCCCceeEEEEeC
Q 001352 485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNE 563 (1093)
Q Consensus 485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~ 563 (1093)
+.......++..... ..........+...+.++.|+ +|++.+++++. ++.+++||+
T Consensus 228 ~~~~~~~~~~s~~~~-------------------~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~ 284 (393)
T 4gq1_A 228 TELVKNPWLLTLNTL-------------------PLVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNL 284 (393)
T ss_dssp ---CSCCCSEEEESG-------------------GGC------CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC
T ss_pred cCCcccceEEecccc-------------------cceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEEEEEC
Confidence 443332222211111 011111223466678888886 79999999876 677999999
Q ss_pred CCCeeeeeeecccccCCCeEE------------------EEEcC-CC-CEEEEEeCCCcEEEEECCCCceEEEEecCCCC
Q 001352 564 SEGAIKRTYQGLQLQHNSVSV------------------VHFDT-AK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 623 (1093)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~v~~------------------v~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 623 (1093)
.++.....+..+. ..+.. ..++| .+ .++++|+.||.|++||..+++.......+.
T Consensus 285 ~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~-- 359 (393)
T 4gq1_A 285 FANNDYNEISDST---MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG-- 359 (393)
T ss_dssp ----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS--
T ss_pred ccCCCCceEeeec---CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC--
Confidence 9887666655443 22222 22333 23 355668899999999999998887776554
Q ss_pred CCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352 624 PENPRICFNKNGTLLAVIANENRIKILET 652 (1093)
Q Consensus 624 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 652 (1093)
..|.+++|+|||++||+++.+| +.+|++
T Consensus 360 ~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 360 MPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 3699999999999999999766 555554
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=7.5e-26 Score=256.12 Aligned_cols=276 Identities=11% Similarity=0.082 Sum_probs=181.1
Q ss_pred CCccEEEEEecCCeEEEEEcCCCCceE-----EecCCCCceEEEEEcc--------CCCEEEEEecCCCCceeEEEEeCC
Q 001352 498 ENIHFIFSISVDGKIKAWLYDSLGARV-----DYDAPGLGCTRMAYSA--------NGRRLFSCGTSKEGESFLVEWNES 564 (1093)
Q Consensus 498 ~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~s~--------d~~~l~~~~~~~~~~~~i~iwd~~ 564 (1093)
+++.+|++++.|++|++||.+.+.... .+.+|...|.+++|+| |+++|++++. |++|++||+.
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~----D~tv~~Wd~~ 174 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD----DCTLIIWRLT 174 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET----TSEEEEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC----CCeEEEEECC
Confidence 356789999999999999998876533 3567889999999998 8999999986 7789999999
Q ss_pred CCeeeeeeecccccCCCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352 565 EGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 643 (1093)
Q Consensus 565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 643 (1093)
++..+..+.+|. ..+.+++|+|++. +|++++.||+|++||+.+++................+.+.+....
T Consensus 175 ~~~~~~~~~~~~---~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~------ 245 (393)
T 4gq1_A 175 DEGPILAGYPLS---SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV------ 245 (393)
T ss_dssp TTEEEEEEEECS---SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred CCceeeeecCCC---CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce------
Confidence 988888888777 8999999999875 788999999999999998776554432211100011111000000
Q ss_pred CCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcc
Q 001352 644 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE 723 (1093)
Q Consensus 644 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~ 723 (1093)
.
T Consensus 246 --------------------------------------------------------~----------------------- 246 (393)
T 4gq1_A 246 --------------------------------------------------------N----------------------- 246 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------e-----------------------
Confidence 0
Q ss_pred ccccccCccccccceEEEEee-cCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCC
Q 001352 724 CQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 802 (1093)
Q Consensus 724 ~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1093)
.....+|...+.++.|+ ++++.+++++.|+.+++|++....
T Consensus 247 ----~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~---------------------------------- 288 (393)
T 4gq1_A 247 ----TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN---------------------------------- 288 (393)
T ss_dssp ---------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------------------------
T ss_pred ----eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC----------------------------------
Confidence 00001134455566665 677777777777777777643210
Q ss_pred CCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee
Q 001352 803 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 882 (1093)
Q Consensus 803 ~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~ 882 (1093)
+...+.. ....++........+....+...+..+.+.+.++.++++|+.||.|++||+.+++.+..
T Consensus 289 -----------~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~ 354 (393)
T 4gq1_A 289 -----------DYNEISD---STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI 354 (393)
T ss_dssp -----------------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE
T ss_pred -----------CCceEee---ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 1111111 11122222222222333334444444555554566778899999999999999999888
Q ss_pred cccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352 883 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 883 l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 918 (1093)
+.+|..+|.+++|||||++||+++.+| +.+|.+..
T Consensus 355 ~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 355 PIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 888999999999999999999999887 77776643
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=3.2e-25 Score=252.19 Aligned_cols=305 Identities=9% Similarity=0.032 Sum_probs=239.8
Q ss_pred CCceeeeecCCCceEEEEEc----cCC----cEEEEec--CCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE
Q 001352 336 SSPMSMDFHPVQHTLLLVGT----NVG----DTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 405 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 405 (1093)
..|...+|++.|..++++|+ .+| +|+|||+ .+++.+.... +.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHHHH
Confidence 47888999999987788886 357 8999999 9998775433 4567777777776
Q ss_pred CC--------------CCCEEEEEEcC------CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC
Q 001352 406 SP--------------DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD 465 (1093)
Q Consensus 406 s~--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d 465 (1093)
++ .+.++++++.+ +.|++||+.++. .+ .+.+|...|.+++|+|||+ .|++++.+
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 64 26777777664 799999998543 33 5678999999999999999 78888877
Q ss_pred C---cEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEE-EEecCCe--EEEEEcCCCCceEEecCCCCceEEEEEc
Q 001352 466 K---TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAYS 539 (1093)
Q Consensus 466 ~---~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~s 539 (1093)
+ .|++||+.+++.. .+..|...+.+++|+| ||+.|+ +++.++. |++||+.+++. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 9999999999875 5667888999999955 667776 6666655 99999987654 5566677789999999
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEE
Q 001352 540 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTT 616 (1093)
Q Consensus 540 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~ 616 (1093)
|||++|++++.. ++...|++||+.+++.. .+..+. ..+..++|+|+|++|++++.+ +.|++||+.+++.. .
T Consensus 276 pdg~~l~~~s~~-~g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~ 349 (415)
T 2hqs_A 276 PDSQNLAFTSDQ-AGRPQVYKVNINGGAPQ-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-V 349 (415)
T ss_dssp TTSSEEEEEECT-TSSCEEEEEETTSSCCE-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-E
T ss_pred CCCCEEEEEECC-CCCcEEEEEECCCCCEE-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-E
Confidence 999999988742 23457999999888743 333333 578899999999999987754 58999999998874 3
Q ss_pred EecCCCCCCCceEEEecCCCEEEEEECCC---eEEEEEcCCCceeeecccccccceeeeecCCC
Q 001352 617 IDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 677 (1093)
Q Consensus 617 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~ 677 (1093)
+..+ ..+.+++|+|+|++|++++.++ .|++|++. +.....+..+...+.+++|+|..
T Consensus 350 l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 350 LSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp CCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred ecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 3332 2588999999999999988876 79999987 45567788899999999999754
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=6.9e-24 Score=241.21 Aligned_cols=307 Identities=13% Similarity=0.113 Sum_probs=228.9
Q ss_pred ccccEEEEEeeCCCCcEEEEEEc----CCC----cEEEEEC--CCCcee--EEeecCCCCeEEeeeccc-----------
Q 001352 441 HVGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK----------- 497 (1093)
Q Consensus 441 h~~~v~~~~~s~d~~~l~l~s~~----~d~----~i~vwd~--~~~~~~--~~~~~h~~~v~~~~~~~~----------- 497 (1093)
+...+...+|.+.|.. ++++|+ .|| +|++||+ .+++++ ..+.+|...+..+++.+.
T Consensus 61 ~~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 61 SAQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp SGGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred cccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 3356788899999876 566775 567 8999999 999987 458889888887776542
Q ss_pred -CCccEEEEEecC------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352 498 -ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 570 (1093)
Q Consensus 498 -~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 570 (1093)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++..
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~- 216 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR- 216 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-
Confidence 113466666654 7999999975 44566666778999999999999999987532 2468999999998875
Q ss_pred eeecccccCCCeEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC-CC-
Q 001352 571 TYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-EN- 645 (1093)
Q Consensus 571 ~~~~~~~~~~~v~~v~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg- 645 (1093)
.+..+. ..+.+++|+|+|++|+ +++.++. |++||+.+++.. .+..+ ...+.+++|+|||++|++++. ++
T Consensus 217 ~l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~ 290 (415)
T 2hqs_A 217 QVASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDG--RSNNTEPTWFPDSQNLAFTSDQAGR 290 (415)
T ss_dssp EEECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCC--SSCEEEEEECTTSSEEEEEECTTSS
T ss_pred EeecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcCC--CCcccceEECCCCCEEEEEECCCCC
Confidence 455555 6899999999999888 5665554 999999988763 34333 345789999999999988876 34
Q ss_pred -eEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccc
Q 001352 646 -RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 724 (1093)
Q Consensus 646 -~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~ 724 (1093)
.|++|++.++.... +
T Consensus 291 ~~i~~~d~~~~~~~~-l--------------------------------------------------------------- 306 (415)
T 2hqs_A 291 PQVYKVNINGGAPQR-I--------------------------------------------------------------- 306 (415)
T ss_dssp CEEEEEETTSSCCEE-C---------------------------------------------------------------
T ss_pred cEEEEEECCCCCEEE-E---------------------------------------------------------------
Confidence 45555654331000 0
Q ss_pred cccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCC
Q 001352 725 QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 804 (1093)
Q Consensus 725 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1093)
. .+..
T Consensus 307 -------------------------------------------------------------------------~--~~~~ 311 (415)
T 2hqs_A 307 -------------------------------------------------------------------------T--WEGS 311 (415)
T ss_dssp -------------------------------------------------------------------------C--CSSS
T ss_pred -------------------------------------------------------------------------e--cCCC
Confidence 0 0223
Q ss_pred CeeEEEEccCCCEEEEEe-C---CeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC---eEEEEEcCCc
Q 001352 805 AVPCFALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSS 877 (1093)
Q Consensus 805 ~v~~l~~s~dg~~la~~~-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~i~iwd~~~~ 877 (1093)
.+.+++|+|||++|++++ + ..|.+||+.+++. ..+..+. .+.+++|+| ++++|++++.++ .|++||+. +
T Consensus 312 ~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g 387 (415)
T 2hqs_A 312 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-G 387 (415)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-S
T ss_pred cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-C
Confidence 455677888888777765 2 4799999998876 3455554 899999999 899998888777 89999987 5
Q ss_pred ceeeecccccCCeEEEEEeCCCC
Q 001352 878 EVISKLEGHSKRVTGLVFSDALN 900 (1093)
Q Consensus 878 ~~~~~l~~h~~~V~~l~~s~dg~ 900 (1093)
+....+.+|.+.|.+++|+|.-.
T Consensus 388 ~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 388 RFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CCEEECCCSSSEEEEEEECCCCC
T ss_pred CcEEEeeCCCCCCcCCccccccc
Confidence 66788999999999999999643
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=2.6e-23 Score=257.76 Aligned_cols=303 Identities=14% Similarity=0.081 Sum_probs=213.5
Q ss_pred CCCceeeeecCCCceEEEEEcc-CC-----cEEEEecCCCceeEEeeeeeeecccc-----cceeeeeeecCCCCCeEEE
Q 001352 335 SSSPMSMDFHPVQHTLLLVGTN-VG-----DTGLWDVNSGQKLFIRNFKVWDIGAC-----SMLFKTALVRDPGVSVNRV 403 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~~-dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~~V~~v 403 (1093)
...|.+++|||||++ |++++. |+ .|++||+.+++........-.....+ ....+..........|.++
T Consensus 36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 447999999999996 677666 88 89999999998764321100000000 0000000000000348899
Q ss_pred EECCCCCEEEEEEcCCEEEEEEccCCC--cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352 404 VWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 481 (1093)
Q Consensus 404 ~~s~dg~~las~~~d~~i~iwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 481 (1093)
+|||||++|++++. +.|++||+.++. ... .+..|...+.+++|||||+ +|+.++ ++.|++||+.+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999986 899999999872 233 3567888999999999999 677776 56899999999887665
Q ss_pred eecCCCC----------------eEEeeecccCCccEEEEEecCC---------------------------------eE
Q 001352 482 FEGHGAP----------------VYSLCPHAKENIHFIFSISVDG---------------------------------KI 512 (1093)
Q Consensus 482 ~~~h~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~i 512 (1093)
...+... +..++| ++||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 5444432 356777 55778899888766 78
Q ss_pred EEEEcCC-CCceEEec--CCCCceEEEEEccCCCEEEEEec-CCCCceeEEEEeCCCCeeeeeeecccccCC---CeEEE
Q 001352 513 KAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVV 585 (1093)
Q Consensus 513 ~vwd~~~-~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~v 585 (1093)
.+||+.+ ++...... .+...+..++| |||++|++... ....+..|++||+.+++....+..+. .. .+..+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~ 342 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNSL 342 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSCC
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCce
Confidence 8899987 66554433 35567899999 99999997764 23346789999999998877776554 12 35688
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECC-CCceEEEEecCCCCCCCceE-EEecCCCEEEEEEC-CC--eEEEEEcC
Q 001352 586 HFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIAN-EN--RIKILETP 653 (1093)
Q Consensus 586 ~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~-dg--~i~iw~~~ 653 (1093)
+|+|+|+.+++++.+|.+.||.+. ++. ...+..+ ...+..+ +|+|+|+.++..+. ++ .+++|++.
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 999999988888999988888765 344 5555433 2346666 59999998765554 44 78888875
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1e-22 Score=252.33 Aligned_cols=331 Identities=11% Similarity=0.017 Sum_probs=236.6
Q ss_pred cccEEEEEeeCCCCcEEEEEEcC-CC-----cEEEEECCCCceeEEeecCCCC------------------------eEE
Q 001352 442 VGNVNDLAFSAPCKQISVITCGD-DK-----TIKVWDAVTGSRTYSFEGHGAP------------------------VYS 491 (1093)
Q Consensus 442 ~~~v~~~~~s~d~~~l~l~s~~~-d~-----~i~vwd~~~~~~~~~~~~h~~~------------------------v~~ 491 (1093)
...+.+++|||||+ +|++++. |+ .|++||+.+++....+..+... +.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 45689999999999 7888887 88 8999999999887777654432 677
Q ss_pred eeecccCCccEEEEEecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352 492 LCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 569 (1093)
Q Consensus 492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 569 (1093)
++| ++||++|++++. +.|++||+.++. ....+..+...+..++|||||++|++++. +.|++||+.+++..
T Consensus 114 ~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-----~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-----RNLWVIDLASGRQM 185 (741)
T ss_dssp CEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-----TEEEEEETTTTEEE
T ss_pred eEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-----CcEEEEecCCCCEE
Confidence 777 457788998886 999999998873 34455566678999999999999998863 36999999998876
Q ss_pred eeeecccc-------------cCCCeEEEEEcCCCCEEEEEeCCC---------------------------------cE
Q 001352 570 RTYQGLQL-------------QHNSVSVVHFDTAKDQILAAGDDH---------------------------------VI 603 (1093)
Q Consensus 570 ~~~~~~~~-------------~~~~v~~v~~~~~~~~l~~~~~dg---------------------------------~i 603 (1093)
+....+.. ....+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 65544320 001147799999999999987665 78
Q ss_pred EEEECCC-CceEEEEecCCCCCCCceEEEecCCCEEEEEEC-----CCeEEEEEcCCCceeeecccccccceeeeecCCC
Q 001352 604 KIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-----ENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 677 (1093)
Q Consensus 604 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~ 677 (1093)
++||+.+ ++.........+...+..++| |||++|++++. +..|++||+.+++.......
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-------------- 330 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE-------------- 330 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE--------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc--------------
Confidence 9999988 876554332123345788999 99999987764 45566776654422111100
Q ss_pred ceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccc
Q 001352 678 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 757 (1093)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 757 (1093)
..+
T Consensus 331 ----------------------------------------------------------------------------~~~- 333 (741)
T 2ecf_A 331 ----------------------------------------------------------------------------TSP- 333 (741)
T ss_dssp ----------------------------------------------------------------------------ECS-
T ss_pred ----------------------------------------------------------------------------CCC-
Confidence 000
Q ss_pred eeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe-CCeEEEEEcc-Cce
Q 001352 758 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM-TFK 835 (1093)
Q Consensus 758 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~-~~~ 835 (1093)
.....+..++|+|||+++++++ +|.++||.+. +++
T Consensus 334 -------------------------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~ 370 (741)
T 2ecf_A 334 -------------------------------------------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK 370 (741)
T ss_dssp -------------------------------------------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred -------------------------------------------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence 0001233567888888776665 4666666654 344
Q ss_pred eEEEECCCCCCeEEE-EEcCCCCCEEE-EEeCCC--eEEEEEcCC-cceeeecccccCCeEEEEEeCCCCEEEEEeCC--
Q 001352 836 TILTIMPPSPTATSL-AFNPHDNNVIA-IGMDDS--TILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGD-- 908 (1093)
Q Consensus 836 ~~~~~~~~~~~i~~l-~~s~~d~~~la-sg~~dg--~i~iwd~~~-~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d-- 908 (1093)
...+..+...+..+ +|+| +++.|+ +++.++ .++||++.. ++....+.+ ...+..++|||||++|+....+
T Consensus 371 -~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~ 447 (741)
T 2ecf_A 371 -AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNS 447 (741)
T ss_dssp -EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETT
T ss_pred -eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCC
Confidence 67777788888887 5999 777664 555555 899999874 565667765 6678899999999998876544
Q ss_pred --CcEEEEeCCCCc
Q 001352 909 --AQIFVWDVDGWG 920 (1093)
Q Consensus 909 --g~i~iwd~~~~~ 920 (1093)
..+.+|+..++.
T Consensus 448 ~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 448 TPPQIELFRANGEK 461 (741)
T ss_dssp EEEEEEEEETTSCE
T ss_pred CCCeEEEEEcCCCe
Confidence 468899986643
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=6.4e-23 Score=253.52 Aligned_cols=386 Identities=11% Similarity=0.077 Sum_probs=255.7
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC---------Cc
Q 001352 532 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV 602 (1093)
Q Consensus 532 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d---------g~ 602 (1093)
...+++|+|||+++++ +. ++.|++||+.+++....+.++......+.+++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997755 32 5579999999999887777665211248999999999999998764 78
Q ss_pred EEEEECCCCceEEEEec-CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceee
Q 001352 603 IKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 681 (1093)
Q Consensus 603 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 681 (1093)
+++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|+..++........+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~------------- 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV------------- 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence 88999999887 33332 222334788999999999999987 799999998765543332211110
Q ss_pred eeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecc-ceeE
Q 001352 682 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHL 760 (1093)
Q Consensus 682 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~v~ 760 (1093)
+..+-. -|-.+ ..-...+.+++|||||+.|++++.+ +.+.
T Consensus 158 --------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~ 198 (723)
T 1xfd_A 158 --------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVP 198 (723)
T ss_dssp --------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred --------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccc
Confidence 000000 00000 0011245789999999999988765 4667
Q ss_pred EeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEE
Q 001352 761 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 840 (1093)
Q Consensus 761 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~ 840 (1093)
+|++.... + .+...+..+.|+++|.. ..+..|.+||+.+++....+
T Consensus 199 ~~~~~~~~--------------------~-----------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 199 IMELPTYT--------------------G-----------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp EEEECCCS--------------------S-----------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEEC
T ss_pred eEEeeccC--------------------C-----------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEe
Confidence 77654211 0 02234678888888863 12357999999998876666
Q ss_pred CCC------CCCeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCCcceeeeccc-ccCCeE----EEEEeCCCCEEEE-
Q 001352 841 MPP------SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEG-HSKRVT----GLVFSDALNILVS- 904 (1093)
Q Consensus 841 ~~~------~~~i~~l~~s~~d~~~lasg~~----dg~i~iwd~~~~~~~~~l~~-h~~~V~----~l~~s~dg~~l~s- 904 (1093)
..+ ...+..++||| |+++|++... +..|++||+.+++....+.. |.+.+. .++|||||+.|+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred eCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 654 56789999999 8988877653 35899999999987766544 334443 7899999998775
Q ss_pred -EeCCC------cEEEEe-CCCCceeeeeeeecCCCcccCCCCceE-EEEccCCCEEEE-EeC---CeEEEEEcCCcc--
Q 001352 905 -SGGDA------QIFVWD-VDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT-- 969 (1093)
Q Consensus 905 -~s~dg------~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~dg~~l~~-~~d---~~i~vwd~~~~~-- 969 (1093)
+..++ .|.+|| ..+++... ......++. .+.. ++|||||+.|+. +.+ +.++||++....
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~ 397 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF 397 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC
T ss_pred EecccCCCcceeEEEEEeccCCCCccc--eeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC
Confidence 45666 566777 34432000 111112222 2444 699999999986 444 679999986432
Q ss_pred eeeeeecC--CCCCEEEEEEccCCCEEEEEeCC-C--cEEEEEcCCCceEEEe
Q 001352 970 CLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-G--TLSIHEASNLEVQCRI 1017 (1093)
Q Consensus 970 ~~~~~~~~--h~~~v~~~~fs~dg~~l~t~~~d-g--~v~vwd~~~~~~~~~~ 1017 (1093)
....+... |...+..++|||||++|+..... + .+.+++..++..+..+
T Consensus 398 ~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 398 NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 23332222 56778899999999988865432 2 3455676666554444
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=3.7e-23 Score=255.65 Aligned_cols=312 Identities=9% Similarity=0.079 Sum_probs=223.9
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCC---CeEEEEECCCCCEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLG 413 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~s~dg~~la 413 (1093)
.+.+++|||||++ +++ +.||+|++||+.+++.... +.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence 5789999999994 666 6899999999999987643 444554 499999999999999
Q ss_pred EEEcC---------CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeec
Q 001352 414 VAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 484 (1093)
Q Consensus 414 s~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~ 484 (1093)
+++.+ +.+.+||+.+++. +.+....+|...+..++|||||+ .|+.++. +.|++||+.+++..+....
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99764 7889999999875 22222335666689999999999 5777664 7999999999988776655
Q ss_pred CCCCe------------------EEeeecccCCccEEEEEecCC----------------------------------eE
Q 001352 485 HGAPV------------------YSLCPHAKENIHFIFSISVDG----------------------------------KI 512 (1093)
Q Consensus 485 h~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i 512 (1093)
+...+ .+++| ++||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44433 67777 55778898887653 79
Q ss_pred EEEEcCCCCceEEecCC------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCe----
Q 001352 513 KAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV---- 582 (1093)
Q Consensus 513 ~vwd~~~~~~~~~~~~~------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---- 582 (1093)
++||+.+++....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+. ...+
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~ 308 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQN 308 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccC
Confidence 99999887765555543 45788999999999987776544456789999999998777665432 1223
Q ss_pred EEEEEcCCCCEEEE--EeCCC------cEEEEE-CCCCce--EEEEecCCCCCCCce-EEEecCCCEEEEEECC---CeE
Q 001352 583 SVVHFDTAKDQILA--AGDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRI 647 (1093)
Q Consensus 583 ~~v~~~~~~~~l~~--~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~d---g~i 647 (1093)
..++|+|||+.|+. +..++ .|++|| ..++.. ...+... ...+.. ++|+|||+.|+..+.+ +.+
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 386 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRR 386 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence 37899999998775 44666 577777 344441 3333321 122333 6899999999877665 789
Q ss_pred EEEEcCCCc--eeeeccc---ccccceeeeecCCCce
Q 001352 648 KILETPESN--SVDAAGV---LSDNLRKLSVNPISTV 679 (1093)
Q Consensus 648 ~iw~~~~~~--~~~~~~~---~~~~i~~~~~~~~~~~ 679 (1093)
++|++.... ....+.. +...+..++|+|++..
T Consensus 387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~ 423 (723)
T 1xfd_A 387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDF 423 (723)
T ss_dssp EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSE
T ss_pred EEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCE
Confidence 999986432 2333332 3455666777654443
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.8e-21 Score=215.28 Aligned_cols=282 Identities=10% Similarity=0.056 Sum_probs=207.0
Q ss_pred eeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc-CC
Q 001352 341 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KH 419 (1093)
Q Consensus 341 ~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~-d~ 419 (1093)
+.|.+++++++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 467788888899999999999999999988764 22345566 9999999998777765 88
Q ss_pred EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-C--cEEEEECCCCceeEEeecCCCCeEEeeecc
Q 001352 420 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 496 (1093)
Q Consensus 420 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-~--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 496 (1093)
.|.+||..+++.. ...+..+..+..+++|+|||+ +++++..+ + .|.+||+.+++.+..+..+ .....++|+|
T Consensus 63 ~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp 137 (331)
T 3u4y_A 63 TLVQIETQLEPPK--VVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP 137 (331)
T ss_dssp EEEEEECSSSSCE--EEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT
T ss_pred eEEEEECCCCcee--EEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC
Confidence 9999999998751 224555666665699999999 56655544 3 8999999999998887654 4468888855
Q ss_pred cCCccEE-EEEecCCe-EEEEEcCCCCceE----EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--
Q 001352 497 KENIHFI-FSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-- 568 (1093)
Q Consensus 497 ~~~~~~l-~s~~~dg~-i~vwd~~~~~~~~----~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-- 568 (1093)
+|+++ ++...++. |.+|+++...... ...........++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 138 --dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~ 212 (331)
T 3u4y_A 138 --NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT 212 (331)
T ss_dssp --TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred --CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence 55544 45556688 9999998655432 22233456789999999998777653 256799999999988
Q ss_pred -eeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--EEEEecC----CC-CCCCceEEEecCCCEEE
Q 001352 569 -KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLLA 639 (1093)
Q Consensus 569 -~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~~~~l~ 639 (1093)
+..+... ..+..++|+|++++++++. .++.|.+||..+++. +..+... .. ......++|+|+|++|+
T Consensus 213 ~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 213 LLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp EEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred eeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 6666543 4678899999999877654 578899999999887 4444322 11 11124589999999887
Q ss_pred EEEC-CCeEEEEEcCCCc
Q 001352 640 VIAN-ENRIKILETPESN 656 (1093)
Q Consensus 640 ~~~~-dg~i~iw~~~~~~ 656 (1093)
+++. ++.|.+|++....
T Consensus 289 v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 289 ISANISRELKVFTISGKV 306 (331)
T ss_dssp EEETTTTEEEEEETTSCE
T ss_pred EecCCCCcEEEEEecCCc
Confidence 6665 5699999998653
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=4.9e-21 Score=214.00 Aligned_cols=274 Identities=11% Similarity=0.085 Sum_probs=213.5
Q ss_pred CCceeeeecCCCceEEEEEcc------CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352 336 SSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 409 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg 409 (1093)
..+..++|+|||++++++... ++.|.+||..+++.+.... ....+..++|+|||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s~dg 100 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATINNTT 100 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEETTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEECCCC
Confidence 478899999999975555433 6789999999998776422 23457789999999
Q ss_pred CEEEEE-EcCCEEEEEEccCCCcccceEEeccccc---------cEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352 410 SLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 479 (1093)
Q Consensus 410 ~~las~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~---------~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 479 (1093)
++++++ ..++.|.+||..+++.+. .+..+.. .+.+++|+|+|+.+++...+.++.|.+||..+++.+
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE
Confidence 976655 457899999999987554 3333322 278899999999532222246889999999999999
Q ss_pred EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC----CCCceEEEEEccCCCEEEEEecCCCCc
Q 001352 480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE 555 (1093)
Q Consensus 480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~~ 555 (1093)
..+..+...+..++|+ +++.++++++.++.|.+||..+.+....+.. +...+..++|+|+|++++++.. .+
T Consensus 178 ~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~ 252 (353)
T 3vgz_A 178 TAIQNTGKMSTGLALD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KA 252 (353)
T ss_dssp EEECCCCTTCCCCEEE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SS
T ss_pred EEecCCCCccceEEEC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CC
Confidence 9887666667888885 4667899999999999999998877766554 3446788999999998887753 25
Q ss_pred eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecC
Q 001352 556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 634 (1093)
Q Consensus 556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 634 (1093)
+.|.+||..+++.+..+.... ...++|+|++++++++. .++.|.+||..+++.+..+.... .+..++|+|+
T Consensus 253 ~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~d 324 (353)
T 3vgz_A 253 AEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSAD 324 (353)
T ss_dssp SEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTT
T ss_pred CEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCC
Confidence 679999999999888777533 25689999999777655 78999999999999988887653 3688999999
Q ss_pred CCEEEEEECCC
Q 001352 635 GTLLAVIANEN 645 (1093)
Q Consensus 635 ~~~l~~~~~dg 645 (1093)
|++++++..++
T Consensus 325 g~~l~v~~~~~ 335 (353)
T 3vgz_A 325 GKTLYVSVKQK 335 (353)
T ss_dssp SCEEEEEEECC
T ss_pred CCEEEEEEccc
Confidence 99887776653
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=4.4e-21 Score=236.07 Aligned_cols=238 Identities=9% Similarity=-0.002 Sum_probs=166.1
Q ss_pred eEEEEECCCCCEEEEEEcCCEEEEEEccCCCcc-cceEEecccc-----------------ccEEEEEeeCCCCcEEEEE
Q 001352 400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVIT 461 (1093)
Q Consensus 400 V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~-~~~~~~~~h~-----------------~~v~~~~~s~d~~~l~l~s 461 (1093)
+..+.|+ |..+++++.++ | +||+.+++.+ +. +..|. ..|.+++|+|| + .++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~ 97 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL 97 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence 4457788 66777777888 8 9999998753 32 22232 46999999999 5 3443
Q ss_pred EcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC-----CCceEEecCCCCc----
Q 001352 462 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG---- 532 (1093)
Q Consensus 462 ~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~~~~---- 532 (1093)
+ .++.|++||+.+++... +..+...+.+++|+ +||+.|+++ .++.|++||+.+ ++...........
T Consensus 98 ~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g 172 (706)
T 2z3z_A 98 F-TQGGLVGFDMLARKVTY-LFDTNEETASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG 172 (706)
T ss_dssp E-ETTEEEEEETTTTEEEE-EECCTTCCTTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred E-ECCEEEEEECCCCceEE-ccCCcccccCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence 3 35999999999887654 44567778888885 477788884 789999999988 6655433333322
Q ss_pred ----------eEEEEEccCCCEEEEEecC-----------------------------CCCceeEEEEeCCCCeeeeeee
Q 001352 533 ----------CTRMAYSANGRRLFSCGTS-----------------------------KEGESFLVEWNESEGAIKRTYQ 573 (1093)
Q Consensus 533 ----------v~~~~~s~d~~~l~~~~~~-----------------------------~~~~~~i~iwd~~~~~~~~~~~ 573 (1093)
+.+++|||||++|++++.+ ...+..|++||+.+++......
T Consensus 173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~ 252 (706)
T 2z3z_A 173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT 252 (706)
T ss_dssp SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence 4789999999999988632 1235789999999988765543
Q ss_pred cccccCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEe-cCC--CCCCCceEEEec--CCCEEEEEEC
Q 001352 574 GLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AGG--GLPENPRICFNK--NGTLLAVIAN 643 (1093)
Q Consensus 574 ~~~~~~~~v~~v~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~~~--~~~~v~~v~~s~--~~~~l~~~~~ 643 (1093)
... +...+..++|+|||+++++++.++ .|++||+.+++....+. ... ....+..++|+| ||++++++..
T Consensus 253 ~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 253 GEP-KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp CSC-TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred CCC-CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 211 236789999999999999987765 89999999984333332 111 111246789999 9988888888
Q ss_pred CCeEEEEEcC
Q 001352 644 ENRIKILETP 653 (1093)
Q Consensus 644 dg~i~iw~~~ 653 (1093)
++.+++|.+.
T Consensus 332 ~g~~~l~~~~ 341 (706)
T 2z3z_A 332 DGWNHLYLYD 341 (706)
T ss_dssp TSSCEEEEEE
T ss_pred CCccEEEEEE
Confidence 8877777654
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=1.5e-20 Score=208.94 Aligned_cols=277 Identities=14% Similarity=0.162 Sum_probs=194.1
Q ss_pred CceEEEEEccCCcEEEEecC-CCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC-CEEEEE
Q 001352 347 QHTLLLVGTNVGDTGLWDVN-SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLY 424 (1093)
Q Consensus 347 g~~llasg~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d-~~i~iw 424 (1093)
+++++++++.|+.|.+||+. +++..... ...|...+.+++|+|+|++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 34567777889999999996 34322111 12367789999999999999999886 899999
Q ss_pred Ecc--CCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC---CCceeEEeecCCCCeEEeeecccCC
Q 001352 425 AYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKEN 499 (1093)
Q Consensus 425 d~~--~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~ 499 (1093)
++. +++ ......+..+. .+..++|+|+++. +++++..++.|.+||+. +++.+..+..+ ..+.+++|++ +
T Consensus 66 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~--d 139 (343)
T 1ri6_A 66 RIAPDDGA-LTFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP--D 139 (343)
T ss_dssp EECTTTCC-EEEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT--T
T ss_pred EecCCCCc-eeeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC--C
Confidence 998 544 22233444444 7899999999994 33445568899999994 44455555543 3577788854 6
Q ss_pred ccEEEEEe-cCCeEEEEEcCC-CCceE----EecC-CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC--Cee--
Q 001352 500 IHFIFSIS-VDGKIKAWLYDS-LGARV----DYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAI-- 568 (1093)
Q Consensus 500 ~~~l~s~~-~dg~i~vwd~~~-~~~~~----~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~-- 568 (1093)
+.++++++ .++.|++||+.+ +.... .... ....+..++|+|+++++++++. .++.|.+|++.. ++.
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 67777777 899999999987 43321 2222 3457888999999998877653 256799999953 433
Q ss_pred eeeeeccc---ccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECC--C--CceEEEEecCCCCCCCceEEEecCCCEEEE
Q 001352 569 KRTYQGLQ---LQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN--K--VQLLTTIDAGGGLPENPRICFNKNGTLLAV 640 (1093)
Q Consensus 569 ~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 640 (1093)
........ .....+..++|+|++++++++ ..++.|.+||+. + .+.+..+.... .+..++|+|+|++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 22222111 012356789999999988854 478999999998 3 33444454432 2789999999999888
Q ss_pred EE-CCCeEEEEEcC
Q 001352 641 IA-NENRIKILETP 653 (1093)
Q Consensus 641 ~~-~dg~i~iw~~~ 653 (1093)
++ .++.+.+|++.
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 88 57999999554
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=5e-21 Score=235.63 Aligned_cols=324 Identities=9% Similarity=0.079 Sum_probs=220.4
Q ss_pred EEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee-EEeecCC-----------------CCeEEeeecccCCccEEEEE
Q 001352 445 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHG-----------------APVYSLCPHAKENIHFIFSI 506 (1093)
Q Consensus 445 v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~h~-----------------~~v~~~~~~~~~~~~~l~s~ 506 (1093)
+..+.|+ |+ .+++++.|+ | +||+.+|+.+ ..+..|. ..|.+++|+++ + .++.+
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd--~-~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR--G-LVVLF 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT--T-EEEEE
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC--C-eEEEE
Confidence 4457788 55 466667777 8 9999999873 4443332 46899999664 3 44444
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-----Ceeeeeeecccc----
Q 001352 507 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-----GAIKRTYQGLQL---- 577 (1093)
Q Consensus 507 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-----~~~~~~~~~~~~---- 577 (1093)
.++.|++||+.+++... +..+...+.+++|||||++|+++. ++.|++||+.+ ++..+.......
T Consensus 99 -~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 45999999998765443 344556788899999999999864 45799999998 776655444330
Q ss_pred -------cCCCeEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEECCCCceEEEE
Q 001352 578 -------QHNSVSVVHFDTAKDQILAAG---------------------------------DDHVIKIWDMNKVQLLTTI 617 (1093)
Q Consensus 578 -------~~~~v~~v~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~ 617 (1093)
+...+.++.|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 001247899999999999987 4567999999998865544
Q ss_pred ecCCCCCCCceEEEecCCCEEEEEECCC-----eEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEec
Q 001352 618 DAGGGLPENPRICFNKNGTLLAVIANEN-----RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 692 (1093)
Q Consensus 618 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1093)
....+...+..++|+|||+.|++++.++ .|.+||..++.....+.
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~------------------------------ 301 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF------------------------------ 301 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE------------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE------------------------------
Confidence 3222334578999999999999887665 77777776542111000
Q ss_pred CCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcC
Q 001352 693 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 772 (1093)
Q Consensus 693 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~ 772 (1093)
.....
T Consensus 302 -----------------------------------------------------------~~~~~---------------- 306 (706)
T 2z3z_A 302 -----------------------------------------------------------VETDK---------------- 306 (706)
T ss_dssp -----------------------------------------------------------EEECS----------------
T ss_pred -----------------------------------------------------------EccCC----------------
Confidence 00000
Q ss_pred cccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc--CCCEEEEEe-CCeEEEEEcc-CceeEEEECCCCCCeE
Q 001352 773 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK--NDAYLFSAS-GGVISLYIVM-TFKTILTIMPPSPTAT 848 (1093)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~la~~~-dg~i~iwd~~-~~~~~~~~~~~~~~i~ 848 (1093)
.....+.+++|+| ||+++++++ ++.++||++. +++.+..+..+...+.
T Consensus 307 ----------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~ 358 (706)
T 2z3z_A 307 ----------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT 358 (706)
T ss_dssp ----------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE
T ss_pred ----------------------------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE
Confidence 0111234567888 888777776 5778888776 6677778877777787
Q ss_pred E-EEEcCCCCCEEEEEe-CCC----eEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCC----CcEEEEeCCC
Q 001352 849 S-LAFNPHDNNVIAIGM-DDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----AQIFVWDVDG 918 (1093)
Q Consensus 849 ~-l~~s~~d~~~lasg~-~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d----g~i~iwd~~~ 918 (1093)
. ++|+| +++.|+.++ .++ .|+.||+.+++ ...+. |...+.+++|||||++++..+.+ +.|.+||+.+
T Consensus 359 ~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 359 NFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred eeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 6 89999 777665544 444 67777877765 34444 67779999999999998876544 4699999988
Q ss_pred Cc
Q 001352 919 WG 920 (1093)
Q Consensus 919 ~~ 920 (1093)
++
T Consensus 436 ~~ 437 (706)
T 2z3z_A 436 GS 437 (706)
T ss_dssp CE
T ss_pred Ce
Confidence 65
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=3.4e-20 Score=206.16 Aligned_cols=205 Identities=9% Similarity=0.145 Sum_probs=143.9
Q ss_pred CeeEEEEccCCCEEEEEe--CCeEEEEEc---cCceeEEEECCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-c
Q 001352 805 AVPCFALSKNDAYLFSAS--GGVISLYIV---MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-S 877 (1093)
Q Consensus 805 ~v~~l~~s~dg~~la~~~--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~i~iwd~~~-~ 877 (1093)
.+..++|+|+|+++++++ ++.|.+||+ .+++....+.. ...+.+++|+| ++++|++++ .++.|++||+.+ +
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCC
Confidence 456788889988777665 578999998 44455555553 34688999999 888777777 899999999987 6
Q ss_pred ceee----eccc-ccCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCC--CceeeeeeeecCCCcccCCCCceEEEEccCC
Q 001352 878 EVIS----KLEG-HSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 949 (1093)
Q Consensus 878 ~~~~----~l~~-h~~~V~~l~~s~dg~~l~s~s-~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 949 (1093)
+... .+.. ....+.+++|+|++++|++++ .++.|.+|++.. ++...................+..++|+|||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 5432 2222 344788999999999776554 789999999954 4433222333222211111246789999999
Q ss_pred CEEEEE--eCCeEEEEEcC--Cc--ceeeeeecCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcC--CCce
Q 001352 950 TRFLLV--HETHLAIYEAE--EL--TCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEAS--NLEV 1013 (1093)
Q Consensus 950 ~~l~~~--~d~~i~vwd~~--~~--~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~-~dg~v~vwd~~--~~~~ 1013 (1093)
++|+++ .++.|.+||+. ++ +.+..+. .+. .+..++|+|||++|++++ .++.|.+|+++ ++..
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQP-TET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-CSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeec-CCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 988863 57899999998 33 3333322 233 388999999999988887 57999999554 6644
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=4e-20 Score=204.96 Aligned_cols=279 Identities=13% Similarity=0.087 Sum_probs=203.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCceeeeccccccccee
Q 001352 592 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRK 670 (1093)
Q Consensus 592 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~i~~ 670 (1093)
+++++++.++.|++||..+++.+..+........+..++|+|+|++++++ ..++.|.+||..+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~----- 76 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST----- 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB-----
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC-----
Confidence 47888999999999999999998888754321136789999999876554 557899999987664432221000
Q ss_pred eeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceE
Q 001352 671 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 750 (1093)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 750 (1093)
.+.
T Consensus 77 ---------------------------------------------------------------------------~~~-- 79 (337)
T 1pby_B 77 ---------------------------------------------------------------------------PEE-- 79 (337)
T ss_dssp ---------------------------------------------------------------------------TTE--
T ss_pred ---------------------------------------------------------------------------ccc--
Confidence 000
Q ss_pred EEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE---------
Q 001352 751 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--------- 821 (1093)
Q Consensus 751 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~--------- 821 (1093)
+...+.+++|+|||++++++
T Consensus 80 ---------------------------------------------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 80 ---------------------------------------------------RVKSLFGAALSPDGKTLAIYESPVRLELT 108 (337)
T ss_dssp ---------------------------------------------------EEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred ---------------------------------------------------ccccccceEECCCCCEEEEEecccccccc
Confidence 00012244555565555555
Q ss_pred ----eCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeC
Q 001352 822 ----SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 897 (1093)
Q Consensus 822 ----~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~ 897 (1093)
.++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+.. ...+.|+|
T Consensus 109 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~ 183 (337)
T 1pby_B 109 HFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQP 183 (337)
T ss_dssp CEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCC
T ss_pred cccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCC
Confidence 358899999999988887764 45678899999 88888877 68999999999988877665431 11237899
Q ss_pred CCCEEEEEeCCC------------------------cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEE
Q 001352 898 ALNILVSSGGDA------------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 953 (1093)
Q Consensus 898 dg~~l~s~s~dg------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 953 (1093)
|++.++..+.++ .|.+||+.+++... ..... +. ..+..++|+|||++++
T Consensus 184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~---~~---~~~~~~~~s~dg~~l~ 256 (337)
T 1pby_B 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM-REVRI---MD---VFYFSTAVNPAKTRAF 256 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE-EEEEE---CS---SCEEEEEECTTSSEEE
T ss_pred CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE-eecCC---CC---CceeeEEECCCCCEEE
Confidence 998776554332 46899999877541 11111 11 2477899999999998
Q ss_pred EEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352 954 LVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 954 ~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|.+||+.+++.+..+.
T Consensus 257 ~~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 257 GA-YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred Ee-CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 88 79999999999988776543 3467899999999999999999999999999999988776
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=3.6e-20 Score=205.31 Aligned_cols=280 Identities=10% Similarity=0.048 Sum_probs=207.6
Q ss_pred EEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCC-CeEEEEECCCCCEEEEE-EcCCEEEEEEcc
Q 001352 350 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGVA-YSKHIVQLYAYH 427 (1093)
Q Consensus 350 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~v~~s~dg~~las~-~~d~~i~iwd~~ 427 (1093)
++++++.++.|.+||+.+++.+.... .++.. .+..++|+|||++++++ ..++.|.+||+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 58888999999999999998775421 12222 47889999999877554 567899999999
Q ss_pred CCCcccceEEecc---ccccEEEEEeeCCCCcEEEEEEc------------CCCcEEEEECCCCceeEEeecCCCCeEEe
Q 001352 428 GGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL 492 (1093)
Q Consensus 428 ~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~~------------~d~~i~vwd~~~~~~~~~~~~h~~~v~~~ 492 (1093)
+++.+... .... |...+..++|+|||+ .+++++ .++.|.+||+.+++.+..+.. ...+..+
T Consensus 65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 98755422 1111 223677899999999 555554 579999999999998887764 4457777
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC------------------
Q 001352 493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------------------ 554 (1093)
Q Consensus 493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~------------------ 554 (1093)
+|+ +++.+++++ ++.|.+||+.+++....+..... ...+.|+|+++.++..+.....
T Consensus 141 ~~s--~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 141 AWA--RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp EEC--TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred EEC--CCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence 775 466777777 68999999998877666554431 1123789999877655421110
Q ss_pred --ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352 555 --ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 555 --~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
...|.+||+.+++.. ...... +...+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++|+
T Consensus 216 ~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s 288 (337)
T 1pby_B 216 AYRTGLLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVS 288 (337)
T ss_dssp GEEEEEEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEEC
T ss_pred ccccceEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEEC
Confidence 014789999998875 322211 22568889999999999888 7999999999999888877543 36899999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCceeeeccc
Q 001352 633 KNGTLLAVIANENRIKILETPESNSVDAAGV 663 (1093)
Q Consensus 633 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 663 (1093)
|+|+++++++.++.|.+||+.+++.+..+..
T Consensus 289 ~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 289 TDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp TTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 9999999998999999999998877766553
No 145
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=1.5e-19 Score=199.76 Aligned_cols=199 Identities=10% Similarity=0.010 Sum_probs=142.9
Q ss_pred EEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEec-CCeEEEEEcCCCCc-eEE
Q 001352 448 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGA-RVD 525 (1093)
Q Consensus 448 ~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~-~~~ 525 (1093)
..|.++++. ++++++.++.|.+||..+++.+..+..+...+ .++|++ +++++++++. ++.|.+||+.+.+. ...
T Consensus 3 ~~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNF-GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCE-EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCE-EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 456666664 68889999999999999999988887766666 888854 6666665555 89999999998887 556
Q ss_pred ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEE-eCCCc-E
Q 001352 526 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHV-I 603 (1093)
Q Consensus 526 ~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~-i 603 (1093)
+..+.....+++|+|+|+++++... ..+...|.+||+.+++.+..+... .....++|+|++++++++ ..++. |
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~i 153 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQFAVTVTG-LNHPFNMQSYSFLKNKFISTIPIP----YDAVGIAISPNGNGLILIDRSSANTV 153 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEECCC-SSSSCEEEEEETTTTEEEEEEECC----TTEEEEEECTTSSCEEEEEETTTTEE
T ss_pred cccCCCCccceEECCCCCEEEEecC-CCCcccEEEEECCCCCeEEEEECC----CCccceEECCCCCEEEEEecCCCceE
Confidence 6555555555999999999994432 212238999999999988877653 356899999999876664 56688 9
Q ss_pred EEEECCCCceEEEE--ecCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCC
Q 001352 604 KIWDMNKVQLLTTI--DAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPES 655 (1093)
Q Consensus 604 ~iwd~~~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~ 655 (1093)
.+|++.....+... ..-........++|+|+|+++++++ .++.|.+||+.++
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 154 RRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp EEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSST
T ss_pred EEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 99998764433111 0001112367899999998666555 5788999987754
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=1e-20 Score=205.32 Aligned_cols=257 Identities=14% Similarity=0.121 Sum_probs=187.9
Q ss_pred EEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccC-CCc
Q 001352 353 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GSD 431 (1093)
Q Consensus 353 sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~-~~~ 431 (1093)
.++.|++|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 34568999999999987653 334788999999999999999986 78999999998 764
Q ss_pred ccceEEeccc-cccEEEEEeeCCCCcEEEEEEc--CCCcEEEE--ECCCCceeEEeecCCCCeEEeeecccCCccEEE-E
Q 001352 432 ARQQLEIDAH-VGNVNDLAFSAPCKQISVITCG--DDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-S 505 (1093)
Q Consensus 432 ~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s 505 (1093)
.. ...+| ...+.+++|+||++ ++++++ .++...|| +..+++ ...+..+. .+..++|++ ++..|+ +
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp--dg~~l~~~ 146 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP--DGKSFTYC 146 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT--TSSEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC--CCCEEEEE
Confidence 43 23344 46789999999999 677776 33445555 545554 44554443 488888854 566666 7
Q ss_pred EecCCeEEEEEcCCC-CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeeeeeeecccccCCCeE
Q 001352 506 ISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVS 583 (1093)
Q Consensus 506 ~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~ 583 (1093)
++.++.+++|+++.. .....+..+...+.+++|+|+|+.+++++.. ++.+.+|++. .+.....+..+. ..+.
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~~ 220 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGDW 220 (297)
T ss_dssp EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEEE
T ss_pred ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---cccC
Confidence 889999999997543 3445566667789999999999998877631 3346666654 344555565554 6788
Q ss_pred EEEEcCCCCEEEEEeCC-----------CcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352 584 VVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 645 (1093)
Q Consensus 584 ~v~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 645 (1093)
.++|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|++++|++++.+.
T Consensus 221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999999987765 569999999887654443222234588999999999998887653
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=3.1e-19 Score=199.34 Aligned_cols=248 Identities=13% Similarity=0.124 Sum_probs=195.6
Q ss_pred CCCeEEEEECCCCCEEEEEEc-------CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352 397 GVSVNRVVWSPDGSLLGVAYS-------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 469 (1093)
Q Consensus 397 ~~~V~~v~~s~dg~~las~~~-------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 469 (1093)
...+..++|+|+|+++++++. ++.|.+||..+++.+.. +. ....+..++|+|+|+. ++++...++.|.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~ 114 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVT 114 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEE
Confidence 356889999999999988874 56899999999875553 32 2345778999999985 456667789999
Q ss_pred EEECCCCceeEEeecCCCC---------eEEeeecccCCccEEEEEe--cCCeEEEEEcCCCCceEEecCCCCceEEEEE
Q 001352 470 VWDAVTGSRTYSFEGHGAP---------VYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAY 538 (1093)
Q Consensus 470 vwd~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 538 (1093)
+||..+++.+..+..+... +..+++++ ++.++++++ .++.|.+||..+.+....+......+..++|
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 192 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLAL 192 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEE
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEE
Confidence 9999999998888765432 67788854 556666655 4889999999988887777756666889999
Q ss_pred ccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc-cCCCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEE
Q 001352 539 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTT 616 (1093)
Q Consensus 539 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~ 616 (1093)
+|+|++++++.. ++.|.+||..+++....+..... +...+..++|+|+++++++++. ++.|.+||..+++.+..
T Consensus 193 s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 193 DSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp ETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 999999998864 56799999999998877765221 2356788999999998877664 59999999999999888
Q ss_pred EecCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCceee
Q 001352 617 IDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVD 659 (1093)
Q Consensus 617 ~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~ 659 (1093)
+.... ...++|+|+|++++++. .++.|.+||..+++.+.
T Consensus 269 ~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 269 VAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK 308 (353)
T ss_dssp EECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence 87543 25799999999776666 68999999998775544
No 148
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=1.2e-20 Score=232.58 Aligned_cols=378 Identities=12% Similarity=0.037 Sum_probs=245.2
Q ss_pred EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeC---------CCcEEE
Q 001352 535 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI 605 (1093)
Q Consensus 535 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~---------dg~i~i 605 (1093)
.++|+|||++++++ . ++.|++||+.+++....+.++......+.+++|+|||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 67899999665543 2 556999999999988777765411124889999999999998876 789999
Q ss_pred EECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeecc
Q 001352 606 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 685 (1093)
Q Consensus 606 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 685 (1093)
||+.+++.+...... ..+..++|||||+.|+.+. ++.|++|++.++...........
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~------------------- 151 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE------------------- 151 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT-------------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc-------------------
Confidence 999998773111111 3478899999999999986 68999999987754332110000
Q ss_pred CCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecc-ceeEEeee
Q 001352 686 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRW 764 (1093)
Q Consensus 686 ~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~v~vw~~ 764 (1093)
..+..|..+ .++.- .-.....+++|||||+.|+.++.+ +.+.+|.+
T Consensus 152 --------------~~v~~g~~~---~v~~e----------------e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 152 --------------NKIFNGIPD---WVYEE----------------EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp --------------TTEEESSCC---HHHHH----------------HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred --------------CCeEccccc---ceeee----------------ecccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence 000000000 00000 001123468999999999988765 55566654
Q ss_pred cCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeE--EE---
Q 001352 765 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI--LT--- 839 (1093)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~--~~--- 839 (1093)
..... .+...+..+.+...|.. .....|++||+.+++.. ..
T Consensus 199 ~~~~~-------------------------------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~~ 244 (719)
T 1z68_A 199 SYYGD-------------------------------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVPV 244 (719)
T ss_dssp EECCS-------------------------------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECCC
T ss_pred eccCC-------------------------------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEccC
Confidence 32100 12233445556555431 11247999999988753 12
Q ss_pred ---ECCCCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEE----cCCcceeeec----ccccCCeE-----EEEEeCCC
Q 001352 840 ---IMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDAL 899 (1093)
Q Consensus 840 ---~~~~~~~i~~l~~s~~d~~~lasg~~d----g~i~iwd----~~~~~~~~~l----~~h~~~V~-----~l~~s~dg 899 (1093)
+..|...+..++||| |++++++.... ..|.+|| +.++++...+ .+|.+.+. .++|||||
T Consensus 245 ~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 245 PAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp CHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 235777899999999 78887775433 2588999 8888877666 46777777 89999999
Q ss_pred CEEEE--EeCCC--cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeC-----CeEEEEEcCC--
Q 001352 900 NILVS--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE-- 967 (1093)
Q Consensus 900 ~~l~s--~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d-----~~i~vwd~~~-- 967 (1093)
+.|+. ...+| .|.+|++.+++.. ....+. ..+..+.++ +++.|+. +.+ +..++|.+..
T Consensus 324 ~~l~~~~~~~~g~~~l~~~~~~~~~~~-----~lt~~~----~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~ 393 (719)
T 1z68_A 324 ISYYKIFSDKDGYKHIHYIKDTVENAI-----QITSGK----WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS 393 (719)
T ss_dssp SCEEEEEECTTSCEEEEEESSCSTTCE-----ECSCSS----SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred CeEEEEEEccCCceEEEEEECCCCceE-----ecccCc----eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence 96654 44555 5777777765421 111121 146777888 8888877 443 6788887753
Q ss_pred cce-eeeee---cCCCCCEEEEEEccCCCEEEE-EeCC--CcEEEEEcCCCceEEEec
Q 001352 968 LTC-LKQWF---PISSVPISQATFSCDCRMVFT-SFVD--GTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 968 ~~~-~~~~~---~~h~~~v~~~~fs~dg~~l~t-~~~d--g~v~vwd~~~~~~~~~~~ 1018 (1093)
+.. ...+. .+|...+..+.|||||++++. ++.+ ..+.+||+.+++....+.
T Consensus 394 g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 394 YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 421 22221 225677889999999988774 4333 468899999887665544
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.85 E-value=4.1e-20 Score=221.45 Aligned_cols=281 Identities=12% Similarity=0.069 Sum_probs=201.3
Q ss_pred HHHHhhcc-CCCCceeeeecCCCceEEEEEcc-CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCC-CCeEE
Q 001352 326 TVAQTLIE-GSSSPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNR 402 (1093)
Q Consensus 326 ~~~~~l~~-h~~~V~~~~~spdg~~llasg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~ 402 (1093)
++++.++. +..+|++++|||||++ ||+++. ||++.||++.+++... +..|. ..|.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~ 69 (582)
T 3o4h_A 11 RIVRDVERLIAVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLD 69 (582)
T ss_dssp HHHHHHHHHHHSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECE
T ss_pred HHHHHHHHHhccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eeccccccccc
Confidence 44444442 2558999999999996 566555 9999999997766543 44455 68999
Q ss_pred EEECCCCCEEEEEEc---CCEEEEEEccC--CCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352 403 VVWSPDGSLLGVAYS---KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 477 (1093)
Q Consensus 403 v~~s~dg~~las~~~---d~~i~iwd~~~--~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 477 (1093)
++|||| +.+++++. +....+|.+.. ..... .+..+. .+...+|+|||+.+++++++.++ +.+||+.+++
T Consensus 70 ~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~ 143 (582)
T 3o4h_A 70 PHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGG 143 (582)
T ss_dssp ECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTE
T ss_pred ccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCc
Confidence 999999 77777765 44566666544 22112 222222 34467899999875666666555 4599999987
Q ss_pred eeEEeecCCCCeEEeeecccCCccEEEEEecC----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001352 478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 553 (1093)
Q Consensus 478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 553 (1093)
.......+. .+++|+ +||++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. +
T Consensus 144 ~~~l~~~~~---~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~ 215 (582)
T 3o4h_A 144 LRELARLPG---FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--A 215 (582)
T ss_dssp EEEEEEESS---CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--S
T ss_pred EEEeecCCC---ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--C
Confidence 765554333 566664 577899988877 78999999877655 55667778899999999999995443 3
Q ss_pred CceeEEEEeCCCCeeeeeeecccccCCCeEEEE--------EcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCC
Q 001352 554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 625 (1093)
Q Consensus 554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 625 (1093)
+...|++||+.+++.. .+.++. ..+..+. |+|||..+++++.+|++++|++ ++..... ...
T Consensus 216 ~~~~i~~~d~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----~~~ 284 (582)
T 3o4h_A 216 REARLVTVDPRDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----QGN 284 (582)
T ss_dssp SCEEEEEECTTTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----SSE
T ss_pred CeeEEEEEcCCCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----CCc
Confidence 3458999999998877 666554 4555556 9999988888999999999999 6554411 134
Q ss_pred CceEEEecCCCEEEEEECCCe---EEEEEcC
Q 001352 626 NPRICFNKNGTLLAVIANENR---IKILETP 653 (1093)
Q Consensus 626 v~~v~~s~~~~~l~~~~~dg~---i~iw~~~ 653 (1093)
+.+++|+ +++++++++.+.. +.+|+..
T Consensus 285 v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 285 HGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred eEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 7789999 9999988877644 5556554
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=1.2e-18 Score=193.87 Aligned_cols=252 Identities=12% Similarity=0.138 Sum_probs=170.2
Q ss_pred CCCCeeEEEEccCCCEEEEEe---CCeEEEEEccCce--eEEEECCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcC
Q 001352 802 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR 875 (1093)
Q Consensus 802 ~~~~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~i~iwd~~ 875 (1093)
+...+..++|+|||+++++.. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345667899999999444443 3789999998776 4444455677889999999 888888877 67999999996
Q ss_pred C-cc--eeeeccc---------ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCceeeeeeeecCCCcccCCCCceE
Q 001352 876 S-SE--VISKLEG---------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 942 (1093)
Q Consensus 876 ~-~~--~~~~l~~---------h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 942 (1093)
. +. .+..+.. +...+.+++|+|||+++++...++.|.+|++. +++...........+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 3 32 2333321 12348899999999977777778899999998 444332222222222 24678
Q ss_pred EEEccCCCEEEEE--eCCeEEEEEcCC--cceeee-eecCCC------CCEEEEEEccCCCEE-EEEeCCCcEEEEEcCC
Q 001352 943 IQFHKDQTRFLLV--HETHLAIYEAEE--LTCLKQ-WFPISS------VPISQATFSCDCRMV-FTSFVDGTLSIHEASN 1010 (1093)
Q Consensus 943 ~~~s~dg~~l~~~--~d~~i~vwd~~~--~~~~~~-~~~~h~------~~v~~~~fs~dg~~l-~t~~~dg~v~vwd~~~ 1010 (1093)
++|+|||++++++ .++.+.+|++.. ++.... ...... ..+..++|+|||++| ++...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999987774 467899999874 443211 111111 458899999999987 4556689999999973
Q ss_pred CceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCC-CcEEEEecCCCCCC
Q 001352 1011 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDT 1067 (1093)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-g~v~~w~~~~~~~~ 1067 (1093)
......+. ..+.. . -.+..++|+| |+++|++++.+ +.|.+|++.....+
T Consensus 272 ~g~~~~~~---~~~~~--~--~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 272 DGHLTLIQ---QISTE--G--DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp GGCEEEEE---EEECS--S--SCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCcEEEeE---EEecC--C--CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 32222221 11110 1 2345789999 58888777765 89999988654444
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=8.8e-20 Score=224.88 Aligned_cols=279 Identities=14% Similarity=0.078 Sum_probs=198.1
Q ss_pred eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCC---CeEEEEECCCCCEEEEE
Q 001352 339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~v~~s~dg~~las~ 415 (1093)
..++|+|||+ +++++ .|++|++||+.+++.... +.+|.. .|.+++|||||++||++
T Consensus 19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~ 77 (719)
T 1z68_A 19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLE 77 (719)
T ss_dssp CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEE
Confidence 4889999996 46654 589999999999987643 223332 48999999999999998
Q ss_pred Ec---------CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-ecC
Q 001352 416 YS---------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH 485 (1093)
Q Consensus 416 ~~---------d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~h 485 (1093)
+. ++.|++||+.+++.+... .+ ...+.+++|||||+ .|+.+. ++.|++||+.+++..+.. .++
T Consensus 78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp EEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred ecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence 76 689999999998652101 12 24688999999999 566665 789999999988775432 233
Q ss_pred CCCe-----------------EEeeecccCCccEEEEEecCC----------------------------------eEEE
Q 001352 486 GAPV-----------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKA 514 (1093)
Q Consensus 486 ~~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~v 514 (1093)
...| .+++| ++||++|++++.|. .|++
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~ 228 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI 228 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence 3222 36777 55788999887652 7889
Q ss_pred EEcCCCCce--EE------ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEe----CCCCeeeeee----eccccc
Q 001352 515 WLYDSLGAR--VD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN----ESEGAIKRTY----QGLQLQ 578 (1093)
Q Consensus 515 wd~~~~~~~--~~------~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~ 578 (1093)
||+.++... .. +..+...+..++|+||++.+++..........|.+|| ..+++....+ .++.
T Consensus 229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~-- 306 (719)
T 1z68_A 229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT-- 306 (719)
T ss_dssp EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--
T ss_pred EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--
Confidence 999876642 12 2245667899999999887776544334456799999 8888877666 3444
Q ss_pred CCCeE-----EEEEcCCCCEEEE--EeCCC--cEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC-----
Q 001352 579 HNSVS-----VVHFDTAKDQILA--AGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----- 644 (1093)
Q Consensus 579 ~~~v~-----~v~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----- 644 (1093)
..+. .+.|+|+|+.++. ...+| .|++||+.+++. ..+..+ ...+..+.++ +++.++..+.+
T Consensus 307 -~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~ 381 (719)
T 1z68_A 307 -GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYP 381 (719)
T ss_dssp -SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred -ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence 4454 7899999996655 33455 577778877763 344322 2336677777 88888777765
Q ss_pred CeEEEEEcCC
Q 001352 645 NRIKILETPE 654 (1093)
Q Consensus 645 g~i~iw~~~~ 654 (1093)
+..++|.+..
T Consensus 382 ~~~~l~~~~~ 391 (719)
T 1z68_A 382 GRRNIYRISI 391 (719)
T ss_dssp TCBEEEEEEC
T ss_pred ceEEEEEEeC
Confidence 7888888754
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=5.5e-19 Score=191.61 Aligned_cols=252 Identities=10% Similarity=0.020 Sum_probs=189.0
Q ss_pred CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEEEecCCCCCCCceEEEe
Q 001352 554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
.++.|++||+.+++.... ..+. ..+.+++|+|+++++++++ ++.|++||+.+ ++.......+. ...+.+++|+
T Consensus 20 ~~~~i~~~d~~~~~~~~~-~~~~---~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s 93 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVV-WQTP---ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA-TICNNDHGIS 93 (297)
T ss_dssp CCEEEEEEETTTTEEEEE-EEES---SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC-CCBCSCCEEC
T ss_pred cceeEEEEeCCCCceeee-ccCC---cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc-cccccceEEC
Confidence 378899999999887644 4444 7899999999999999887 78999999999 87765554332 2457889999
Q ss_pred cCCCEEEEEEC--CCeEEEEEc--CCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001352 633 KNGTLLAVIAN--ENRIKILET--PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 708 (1093)
Q Consensus 633 ~~~~~l~~~~~--dg~i~iw~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d 708 (1093)
|+++++++++. ++...||.+ .++.. ..+.
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~---------------------------------------------- 126 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT---------------------------------------------- 126 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCCC-EECC----------------------------------------------
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCce-EEee----------------------------------------------
Confidence 99999999983 345555544 32211 0000
Q ss_pred ccceecceeeccCccccccccCccccccceEEEEeecCCceEE-EeeccceeEEeeecCcccCcCcccccccCCcccCCC
Q 001352 709 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF-ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR 787 (1093)
Q Consensus 709 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~-~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1093)
....+..++|+|+++.++ ++..++.+.+|++...
T Consensus 127 -------------------------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~-------------------- 161 (297)
T 2ojh_A 127 -------------------------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID-------------------- 161 (297)
T ss_dssp -------------------------SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT--------------------
T ss_pred -------------------------cCCCccceEECCCCCEEEEEECCCCceEEEEEECC--------------------
Confidence 112366789999999887 5667899999986532
Q ss_pred CCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEcc-CceeEEEECCCCCCeEEEEEcCCCCCEEEEEe
Q 001352 788 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM-TFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 864 (1093)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~ 864 (1093)
++. ... +. .+...+.+++|+|+|+++++++ ++.+++|++. .+.....+..+...+.+++|+| ++++|++++
T Consensus 162 ~~~-~~~--~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~ 235 (297)
T 2ojh_A 162 SGV-ETR--LT--HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVS 235 (297)
T ss_dssp TCC-EEE--CC--CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEE
T ss_pred CCc-ceE--cc--cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEE
Confidence 111 111 11 2567889999999999888765 6889999886 5666777888888899999999 899988887
Q ss_pred CC-----------CeEEEEEcCCcce--eeecccccCCeEEEEEeCCCCEEEEEeCCC
Q 001352 865 DD-----------STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA 909 (1093)
Q Consensus 865 ~d-----------g~i~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg 909 (1093)
.+ +.|++||+.+++. +..+.+|...+.+++|+||+++|++++.+.
T Consensus 236 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 236 YDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 66 5799999998865 344557888999999999999999887664
No 153
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=1.5e-18 Score=213.57 Aligned_cols=280 Identities=14% Similarity=0.119 Sum_probs=186.6
Q ss_pred CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCC-----CeEEEEECCCC
Q 001352 335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDG 409 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~s~dg 409 (1093)
......++|+|||+ +++++ |++|++||+.+|+.... +.+|.. ....++|||||
T Consensus 16 ~~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg 73 (740)
T 4a5s_A 16 RLKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDG 73 (740)
T ss_dssp CCCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTS
T ss_pred cccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCC
Confidence 34577999999998 57776 89999999999986543 344443 23458999999
Q ss_pred CEEEEEEcC---------CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE
Q 001352 410 SLLGVAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY 480 (1093)
Q Consensus 410 ~~las~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~ 480 (1093)
++|++++.+ +.+.+||+.+++... +..|...+..++|||||+ .|+.+. |+.|++||+.+++..+
T Consensus 74 ~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~ 146 (740)
T 4a5s_A 74 QFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYR 146 (740)
T ss_dssp SEEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEE
T ss_pred CEEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEE
Confidence 999999876 556799999986433 557788899999999999 466654 7899999999887554
Q ss_pred E-eecCCCCe-----------------EEeeecccCCccEEEEEecCCe-EEEEEcCCCCceEEecCCCCceEEEEEccC
Q 001352 481 S-FEGHGAPV-----------------YSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSAN 541 (1093)
Q Consensus 481 ~-~~~h~~~v-----------------~~~~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d 541 (1093)
. ..++...+ ..+.| ++||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.
T Consensus 147 lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKA 221 (740)
T ss_dssp CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBT
T ss_pred EcCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCC
Confidence 2 22333222 23556 568888988876655 8888763221100 12335566777776
Q ss_pred CCEEEEEecCCCCceeEEEEeCCC---Ce--eeeeeeccc---ccCCCeEEEEEcCCCCEEEEEe----CCCcEEEEECC
Q 001352 542 GRRLFSCGTSKEGESFLVEWNESE---GA--IKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMN 609 (1093)
Q Consensus 542 ~~~l~~~~~~~~~~~~i~iwd~~~---~~--~~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~~----~dg~i~iwd~~ 609 (1093)
|.. .....|++||+.+ ++ ....+.... .+...+..++|+|||+.++... .+..|++||+.
T Consensus 222 G~~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 222 GAV--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293 (740)
T ss_dssp TSC--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred cCc--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC
Confidence 643 1244699999998 73 122232200 1236789999999998766643 23479999999
Q ss_pred CCc----eE--EEE--ecCCCCCC---CceEEEecCCCEEE-EEEC-C--CeEEEEEcCCCc
Q 001352 610 KVQ----LL--TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESN 656 (1093)
Q Consensus 610 ~~~----~~--~~~--~~~~~~~~---v~~v~~s~~~~~l~-~~~~-d--g~i~iw~~~~~~ 656 (1093)
+++ +. ..+ ..+..... ...++|+|||+.++ ..+. + ..|++|+..++.
T Consensus 294 tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred CCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 887 21 111 22221111 23789999999887 6654 3 457777776543
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=2.7e-17 Score=184.04 Aligned_cols=312 Identities=10% Similarity=0.085 Sum_probs=196.0
Q ss_pred cCCCEEEEEecCCCCceeEEEEeC--CCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCC--C
Q 001352 540 ANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK--V 611 (1093)
Q Consensus 540 ~d~~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d----g~i~iwd~~~--~ 611 (1093)
+...++++++.....++.|++|.+ .+++.......+ ...+..++|+|++++|++++.+ +.|.+|++.. +
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~---~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE---VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE---CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc---CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence 444566666554444556777755 566554433332 3667889999999999998875 7999998865 4
Q ss_pred ceEEEEecCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceE
Q 001352 612 QLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 690 (1093)
Q Consensus 612 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 690 (1093)
+................+++ ++++++++. .++.+.+|++.....+.....
T Consensus 88 ~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~--------------------------- 138 (361)
T 3scy_A 88 TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD--------------------------- 138 (361)
T ss_dssp EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE---------------------------
T ss_pred cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce---------------------------
Confidence 43322221111123455666 788777776 578899999864322111100
Q ss_pred ecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccC
Q 001352 691 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 770 (1093)
Q Consensus 691 ~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~ 770 (1093)
.+.....+.
T Consensus 139 -------------------------------------------------~~~~~g~~~---------------------- 147 (361)
T 3scy_A 139 -------------------------------------------------VIEFKGSGP---------------------- 147 (361)
T ss_dssp -------------------------------------------------EEECCCCCS----------------------
T ss_pred -------------------------------------------------eEEccCCCC----------------------
Confidence 000000000
Q ss_pred cCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEccCce-------e-----
Q 001352 771 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK-------T----- 836 (1093)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~-------~----- 836 (1093)
.+...+...+.+++|+|||+++++++ ++.|.+|++.... .
T Consensus 148 --------------------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 148 --------------------------DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp --------------------------CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred --------------------------CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence 00001334467788899988776665 5788999876433 1
Q ss_pred -EEEECCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCcce--eee---cccccCCeEEEEEeCCCCEEEEEeCC-
Q 001352 837 -ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISK---LEGHSKRVTGLVFSDALNILVSSGGD- 908 (1093)
Q Consensus 837 -~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~i~iwd~~~~~~--~~~---l~~h~~~V~~l~~s~dg~~l~s~s~d- 908 (1093)
......+......++|+| |+++|++++ .++.|.+|++.+++. +.. ...+...+..++|+|||++|+++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 202 PEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred ccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence 122233456688999999 888887777 689999999987754 222 23344567899999999998766654
Q ss_pred -CcEEEEeCC--CCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE--eCCeEEEEE--cCCcceeeeeecCCCCC
Q 001352 909 -AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYE--AEELTCLKQWFPISSVP 981 (1093)
Q Consensus 909 -g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd--~~~~~~~~~~~~~h~~~ 981 (1093)
+.|.+|+++ +++......+.. + ..+..++|+|||++|+++ .++.|.+|+ ..+|+........+...
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~ 353 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDK 353 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSS
T ss_pred CCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCC
Confidence 889999996 344222222222 1 247799999999999885 467899965 45676554322234567
Q ss_pred EEEEEEc
Q 001352 982 ISQATFS 988 (1093)
Q Consensus 982 v~~~~fs 988 (1093)
+.++.|.
T Consensus 354 p~~v~~~ 360 (361)
T 3scy_A 354 PVCLKFV 360 (361)
T ss_dssp EEEEEEE
T ss_pred CeEEEEc
Confidence 8888886
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=1.4e-17 Score=186.23 Aligned_cols=302 Identities=13% Similarity=0.115 Sum_probs=198.2
Q ss_pred eeecCCCceEEEEEcc----CCcEEEEec--CCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352 341 MDFHPVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 414 (1093)
Q Consensus 341 ~~~spdg~~llasg~~----dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las 414 (1093)
.+..+... .+.+|+. ++.|.+|++ .+|+..... .. +...+..++|+|||++|++
T Consensus 7 ~~~~~~~~-~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~ 66 (361)
T 3scy_A 7 PSTTDSEL-TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYS 66 (361)
T ss_dssp CCGGGGEE-EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEE
T ss_pred hhhCCCce-EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEE
Confidence 33444444 4666643 567888876 456544321 11 5677888999999999999
Q ss_pred EEcC----CEEEEEEccCC-CcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe------e
Q 001352 415 AYSK----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF------E 483 (1093)
Q Consensus 415 ~~~d----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~------~ 483 (1093)
++.+ +.|.+|++... ..+........+......+++ +++. ++++...++.|.+|++.+...+..+ .
T Consensus 67 ~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 143 (361)
T 3scy_A 67 VNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFK 143 (361)
T ss_dssp EECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECC
T ss_pred EEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEcc
Confidence 9875 79999998763 223333344445667778888 7773 3444557889999999765433211 1
Q ss_pred c--------CCCCeEEeeecccCCccEEEEEe-cCCeEEEEEcCCCCc------e-------EEecCCCCceEEEEEccC
Q 001352 484 G--------HGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA------R-------VDYDAPGLGCTRMAYSAN 541 (1093)
Q Consensus 484 ~--------h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~------~-------~~~~~~~~~v~~~~~s~d 541 (1093)
+ +...+.+++|+ ++++++++++ .++.|++|+++.... . ............++|+||
T Consensus 144 g~~~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd 221 (361)
T 3scy_A 144 GSGPDKERQTMPHLHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD 221 (361)
T ss_dssp CCCSCTTTCSSCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT
T ss_pred CCCCCccccCCCcceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC
Confidence 1 12234678885 4667665554 589999999886542 1 222334456789999999
Q ss_pred CCEEEEEecCCCCceeEEEEeCCCCee--eeeeecccccCCCeEEEEEcCCCCEEEEEeC--CCcEEEEECC--CCc--e
Q 001352 542 GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMN--KVQ--L 613 (1093)
Q Consensus 542 ~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~ 613 (1093)
|++++++.. .++.|.+|++.+++. +..+.....+......++|+|+|++++++.. ++.|.+|++. +++ .
T Consensus 222 g~~l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~ 298 (361)
T 3scy_A 222 GKFAYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTK 298 (361)
T ss_dssp SSEEEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEE
T ss_pred CCEEEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEE
Confidence 998887763 256799999987755 2333332222245689999999999977665 4899999985 455 3
Q ss_pred EEEEecCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcC--CCceeeec-ccccccceeeee
Q 001352 614 LTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETP--ESNSVDAA-GVLSDNLRKLSV 673 (1093)
Q Consensus 614 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~--~~~~~~~~-~~~~~~i~~~~~ 673 (1093)
+..+.. ...+..++|+|+|++|++++ .++.+.+|++. +++..... ..+...+.|+.|
T Consensus 299 ~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 299 VGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred eeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 344443 13478999999999998888 57999997654 55444332 223334555554
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=4.4e-19 Score=200.96 Aligned_cols=299 Identities=11% Similarity=0.027 Sum_probs=195.9
Q ss_pred HhhccCCCCcee-----eeecCCCceEEEEEccCC--cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE
Q 001352 329 QTLIEGSSSPMS-----MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 401 (1093)
Q Consensus 329 ~~l~~h~~~V~~-----~~~spdg~~llasg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 401 (1093)
..|..|...+.. .+|||||++|++++..+| .|.+||+.+++.... ..+|...+.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------------------t~~~~~~~~ 84 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------------------TEGRGDNTF 84 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC-------------------CCSSCBCSS
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe-------------------eeCCCCCcc
Confidence 445556655555 899999997555544467 488889998876542 344555565
Q ss_pred EEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEE--eeCCCCcEEEEE------------------
Q 001352 402 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVIT------------------ 461 (1093)
Q Consensus 402 ~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~--~s~d~~~l~l~s------------------ 461 (1093)
.++|||||++|++++.++.|++||+.+++... ....+...+.... +++|++ +++.
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHH
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhh
Confidence 78899999999999999999999999986433 2334555454443 489998 4543
Q ss_pred ----EcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCCC-
Q 001352 462 ----CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPG- 530 (1093)
Q Consensus 462 ----~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~- 530 (1093)
.+.+..|.+||+.+++.. .+..+...+..++|+|. |+..|+....+ ..|.++|..............
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 237 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEG 237 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTT
T ss_pred hhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCC
Confidence 224568999999998754 44456677888888541 66777776653 367777776554433222222
Q ss_pred CceEEEEEccCCCEEEEEecCC-CCceeEEEEeCCCCeeeee--eecccccCCCeEEEEEcCCCCEEEEE---------e
Q 001352 531 LGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAA---------G 598 (1093)
Q Consensus 531 ~~v~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~v~~~~~~~~l~~~---------~ 598 (1093)
..+..++|+|||+.|+..+... .....|++||+.+++.... +.++...........|+|+|+.++.. .
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 317 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE 317 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------C
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence 2577889999999887665432 2234599999999875332 22210000001123689999988764 4
Q ss_pred CCCcEEEEECCCCceEEEEecCCCCC--------CCceEEEecCCCEEEEEEC-CCeEEEEEcC
Q 001352 599 DDHVIKIWDMNKVQLLTTIDAGGGLP--------ENPRICFNKNGTLLAVIAN-ENRIKILETP 653 (1093)
Q Consensus 599 ~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~ 653 (1093)
.+..|++||+.+++............ .+..++|+|||+.|+..+. +|...+|.+.
T Consensus 318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 318 NDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 56789999999887644433222100 3678899999998887764 6666666544
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=6e-18 Score=208.16 Aligned_cols=381 Identities=12% Similarity=0.030 Sum_probs=243.4
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCe--EEEEEcCCCCEEEEEeCC---------
Q 001352 532 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGDD--------- 600 (1093)
Q Consensus 532 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v--~~v~~~~~~~~l~~~~~d--------- 600 (1093)
...++.|+|||++++++ ++.|++||+.+++....+.++......+ ..+.|||||++|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred cccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 34578999999988875 4469999999999888887776222223 448899999999998875
Q ss_pred CcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecc-cccccceeeeecCCCce
Q 001352 601 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTV 679 (1093)
Q Consensus 601 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ 679 (1093)
+.+.+||+.+++... +.. +...+..++|||||+.||.+. ++.|++|+..++...+... ++...
T Consensus 92 ~~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------ 155 (740)
T 4a5s_A 92 ASYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------ 155 (740)
T ss_dssp EEEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT------------
T ss_pred eEEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc------------
Confidence 567799999988653 222 234578999999999999885 5899999998765432211 10000
Q ss_pred eeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeecc-ce
Q 001352 680 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GV 758 (1093)
Q Consensus 680 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~ 758 (1093)
+..+.. -.+|.-+ -.+....+.|||||+.|+....| +.
T Consensus 156 ----------------------~~~g~~---~~v~~ee----------------~~~~~~~~~wSpDg~~la~~~~d~~~ 194 (740)
T 4a5s_A 156 ----------------------IYNGIT---DWVYEEE----------------VFSAYSALWWSPNGTFLAYAQFNDTE 194 (740)
T ss_dssp ----------------------EEESBC---CHHHHHH----------------TSSSSBCEEECTTSSEEEEEEEECTT
T ss_pred ----------------------eecCcc---cccccch----------------hcCCCcceEECCCCCEEEEEEEcccC
Confidence 000000 0000000 01223457899999999988766 44
Q ss_pred eEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccC---ce
Q 001352 759 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK 835 (1093)
Q Consensus 759 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~---~~ 835 (1093)
+.+|++..... .. .+...+..+.+.+.|..- ...+|.+||+.+ ++
T Consensus 195 v~~~~~~~~~~-----------------~~------------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~ 242 (740)
T 4a5s_A 195 VPLIEYSFYSD-----------------ES------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVT 242 (740)
T ss_dssp CCEEEEEECCS-----------------TT------------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSS
T ss_pred CceEEEEeecC-----------------CC------------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCC
Confidence 88877643210 00 133455667777776431 123689999998 73
Q ss_pred --eEEEECC------CCCCeEEEEEcCCCCCEEEEEeC----CCeEEEEEcCCcc----ee--eec--ccccCCeE----
Q 001352 836 --TILTIMP------PSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT---- 891 (1093)
Q Consensus 836 --~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~----dg~i~iwd~~~~~----~~--~~l--~~h~~~V~---- 891 (1093)
....+.. +...+..++|+| |+++++.... +..|++||+.+++ +. ..+ .+|...|.
T Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~ 321 (740)
T 4a5s_A 243 NATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321 (740)
T ss_dssp CCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred cceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence 2334442 677899999999 8887665543 3379999999987 33 222 45665554
Q ss_pred -EEEEeCCCCEEE-EEeC-C--CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeC-----C--
Q 001352 892 -GLVFSDALNILV-SSGG-D--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----T-- 958 (1093)
Q Consensus 892 -~l~~s~dg~~l~-s~s~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d-----~-- 958 (1093)
.++|||||+.|+ ..+. + ..|.+||+.+++. .+...+.. .+..+. ++|++.|+. +.. +
T Consensus 322 ~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~ 391 (740)
T 4a5s_A 322 SEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGR 391 (740)
T ss_dssp CCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCB
T ss_pred CCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCcee
Confidence 789999999887 6654 3 4688889887552 22333322 244443 355777766 432 2
Q ss_pred eEEEEEcCCcceeeeeec---CCCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceEEEec
Q 001352 959 HLAIYEAEELTCLKQWFP---ISSVPISQATFSCDCRMVFTSFVD---GTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 959 ~i~vwd~~~~~~~~~~~~---~h~~~v~~~~fs~dg~~l~t~~~d---g~v~vwd~~~~~~~~~~~ 1018 (1093)
.|+..++..+.....+.. +....+..+.|||||++++..... ..+.+++..+++....+.
T Consensus 392 ~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 392 NLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp EEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 455555555443222221 234678899999999987755433 368888988887655443
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=1.1e-17 Score=185.91 Aligned_cols=247 Identities=11% Similarity=0.141 Sum_probs=170.7
Q ss_pred CCCCeEEEEECCCCCEEEEEEc---CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEc-CCCcEEEE
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVW 471 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~~i~vw 471 (1093)
+...+..++|+|||+ |++++. ++.|.+||+.+++. +....+..+...+..++|+|||+ +|++++ .++.|.+|
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~spdg~--~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAVDEARQ--LVYSANYHKGTAEVM 113 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEEETTTT--EEEEEETTTTEEEEE
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEECCCCC--EEEEEeCCCCEEEEE
Confidence 456788899999999 555544 58999999987652 33334456778899999999999 566555 78999999
Q ss_pred ECCC-Cc--eeEEeec---------CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE---EecC-CCCceEE
Q 001352 472 DAVT-GS--RTYSFEG---------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDA-PGLGCTR 535 (1093)
Q Consensus 472 d~~~-~~--~~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~-~~~~v~~ 535 (1093)
++.. |. .+..+.. +...+.+++|++ +++++++...++.|++|++....... .... .......
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence 9963 33 2333322 112477888855 55677777778999999998433222 1222 3346788
Q ss_pred EEEccCCCEEEEEecCCCCceeEEEEeCCC--Ceee--eeeecccc---cCCCeEEEEEcCCCCEEEE-EeCCCcEEEEE
Q 001352 536 MAYSANGRRLFSCGTSKEGESFLVEWNESE--GAIK--RTYQGLQL---QHNSVSVVHFDTAKDQILA-AGDDHVIKIWD 607 (1093)
Q Consensus 536 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~~--~~~~~~~~---~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd 607 (1093)
++|+|||++++++.. .++.|.+|++.. ++.. ..+..... ....+..++|+|+|+++++ ...++.|.+|+
T Consensus 192 ~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~ 268 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA 268 (347)
T ss_dssp EEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred EEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence 999999998877653 255688898764 5432 22222210 0134888999999998855 56789999999
Q ss_pred CCC-C--ceEEEEecCCCCCCCceEEEecCCCEEEEEECC-CeEEEEEcC
Q 001352 608 MNK-V--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKILETP 653 (1093)
Q Consensus 608 ~~~-~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iw~~~ 653 (1093)
+.. + +.+..+..++ ..+..++|+|+|++|++++.+ +.+.+|++.
T Consensus 269 ~~~~g~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 269 VTADGHLTLIQQISTEG--DFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ECGGGCEEEEEEEECSS--SCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCcEEEeEEEecCC--CCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 973 2 4444554432 346899999999998888764 899999554
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=3e-19 Score=203.37 Aligned_cols=272 Identities=13% Similarity=0.102 Sum_probs=187.7
Q ss_pred CCCeeEEEEccCCCEEEEEeCCeEEEEEccCce----------eEEE-----ECCCCCCeEEEEEcCCCCCEEE----EE
Q 001352 803 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFK----------TILT-----IMPPSPTATSLAFNPHDNNVIA----IG 863 (1093)
Q Consensus 803 ~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~----------~~~~-----~~~~~~~i~~l~~s~~d~~~la----sg 863 (1093)
...+..+++++++.++++++.+.+++|+..... .+.. ...+...|.+++|+| ++++|| +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence 446788999999999999986559998864211 1111 112456799999999 899999 78
Q ss_pred eCCCeEEEEEcCCc--------c---eeeecccccCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCceeeeeeeecCC
Q 001352 864 MDDSTILIYNARSS--------E---VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 931 (1093)
Q Consensus 864 ~~dg~i~iwd~~~~--------~---~~~~l~~h~~~V~~l~~s~d-g~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 931 (1093)
+.|+.|+|||+.++ + .+..+.+|...|.+++|+|+ +++|++++.||+|++||+.++.. .....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-----~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-----VCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----EEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----eeecc
Confidence 88999999999765 1 14567789999999999998 89999999999999999998632 11122
Q ss_pred CcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeec------CCCCCEEEEEEccCCCEEEEE-eCCCc-
Q 001352 932 GVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTS-FVDGT- 1002 (1093)
Q Consensus 932 ~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~------~h~~~v~~~~fs~dg~~l~t~-~~dg~- 1002 (1093)
+|.. .|.+++|+|+|++|++ +.|++|++||+. ++....+.. .|...|.+++|++++.++++. +.||.
T Consensus 190 ~~~~---~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 190 PSTV---AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp CGGG---CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred CCCC---ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 2332 6999999999999999 578999999998 544443221 233489999999999887653 34433
Q ss_pred -----EEEEEcCCCce-----EEEeccccccCCCCCCCccceeEEEeCCCCCCEEEE-EeCCCcEEEEecCCCCCCcccC
Q 001352 1003 -----LSIHEASNLEV-----QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV-GLTNGEVYVIEPNEPGDTWAVL 1071 (1093)
Q Consensus 1003 -----v~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~-~~~dg~v~~w~~~~~~~~~~~~ 1071 (1093)
+++|++..... ...+....+-... .....+.+.+.++ .+++++ .+..+.|.+......+..|...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~l~d-w~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCT---ERQHHYYLSYIEE-WDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCS---SSCCCEEEEEEGG-GTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCCCC---CcCcceeeehhcc-CCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 89999986532 1111111110001 1112223444453 455544 4455679999887776678777
Q ss_pred CCccccCCCCCCCCccc
Q 001352 1072 PPDEIVGDQPTSTSEGD 1088 (1093)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~ 1088 (1093)
...|...+.-+...+++
T Consensus 342 ~~~d~~ra~lP~~~~~~ 358 (434)
T 2oit_A 342 LLEDSSRAELPVTDKSD 358 (434)
T ss_dssp EECGGGCCBCCBCTTSC
T ss_pred eccccccccccCCCCCC
Confidence 77776666666555543
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=4e-18 Score=189.89 Aligned_cols=284 Identities=11% Similarity=0.043 Sum_probs=194.3
Q ss_pred eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-Ec
Q 001352 339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YS 417 (1093)
Q Consensus 339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-~~ 417 (1093)
+.++++++++ ++++++.+++|.+||+.+++.+..... +....+..++|+|||++++++ ..
T Consensus 3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~~~v~~~~ 63 (349)
T 1jmx_B 3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVM------------------PDKFGPGTAMMAPDNRTAYVLNNH 63 (349)
T ss_dssp -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEEC------------------SSCCSSCEEEECTTSSEEEEEETT
T ss_pred ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEec------------------CCCCCCceeEECCCCCEEEEEeCC
Confidence 3568888887 688889999999999999987754221 122257889999999976554 56
Q ss_pred CCEEEEEEccCCCcccceEEec-cc-----cccEEEEEeeCCCCcEEEEEEcCC------------CcEEEEECCCCcee
Q 001352 418 KHIVQLYAYHGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSRT 479 (1093)
Q Consensus 418 d~~i~iwd~~~~~~~~~~~~~~-~h-----~~~v~~~~~s~d~~~l~l~s~~~d------------~~i~vwd~~~~~~~ 479 (1093)
++.|.+||+.+++... .+. ++ ...+..++|+|||+ ++++++.+ +.|.+||+.+++..
T Consensus 64 ~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 64 YGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp TTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred CCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 8899999999886543 222 22 23478899999999 56666654 89999999985543
Q ss_pred ---EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCC------------------------c
Q 001352 480 ---YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL------------------------G 532 (1093)
Q Consensus 480 ---~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~------------------------~ 532 (1093)
..+. +...+.+++|++ ++. +++++ +.|.+||+.+++....+..... .
T Consensus 139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 3444 334577788854 556 55543 4499999988877665543320 2
Q ss_pred eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 001352 533 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV 611 (1093)
Q Consensus 533 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~dg~i~iwd~~~~ 611 (1093)
...+++++++........ ....+..+|..+++.... .... ....+..++|+| ++++++++ ++.|.+||+.++
T Consensus 213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~ 285 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQ-EFAD-LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR 285 (349)
T ss_dssp EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEE-EEEE-CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT
T ss_pred eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEec-cccc-CCCcceeeEecCCCCCEEEEE--cCeEEEEECccC
Confidence 344666655432211110 011233356665543211 1111 235688999999 99999888 889999999999
Q ss_pred ceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecc
Q 001352 612 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 662 (1093)
Q Consensus 612 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 662 (1093)
+.+..+.... .+.+++|+|+|++|++++.++.|.+||..+.+.+..+.
T Consensus 286 ~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 286 KLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred eEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 9888877543 36799999999999988889999999999887766554
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=1.2e-18 Score=208.60 Aligned_cols=236 Identities=16% Similarity=0.168 Sum_probs=175.8
Q ss_pred CCCeEEEEECCCCCEEEEEEc-CCEEEEEEccCCCcccceEEecccc-ccEEEEEeeCCCCcEEEEEEcC---CCcEEEE
Q 001352 397 GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKVW 471 (1093)
Q Consensus 397 ~~~V~~v~~s~dg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~~---d~~i~vw 471 (1093)
..+|.+++|+|||++||+++. ||++.||++.+++.. .+..|. ..+..++|+|| + ++++++. +...++|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 568999999999999999887 999999999776432 344555 68999999999 5 6776664 4556665
Q ss_pred ECCC---CceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352 472 DAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 548 (1093)
Q Consensus 472 d~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 548 (1093)
.+.. +... .+..+. .+...+|++++++..+++++.++.. +||+.+++.......+. .+++|||||++++++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5433 3322 443222 3445677777666566666555554 99998876555443333 789999999999988
Q ss_pred ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceEEEEecCCCCCCC
Q 001352 549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPEN 626 (1093)
Q Consensus 549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v 626 (1093)
+.+..+...|++||+.+++.. .+..+. ..+..++|+|||+.|+++..++ .|++||+.+++.. .+..+ ...+
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~ 240 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDF 240 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcCh
Confidence 765444477999999988765 555555 6789999999999999888888 8999999998877 44433 2335
Q ss_pred ceEE--------EecCCCEEEEEECCCeEEEEEc
Q 001352 627 PRIC--------FNKNGTLLAVIANENRIKILET 652 (1093)
Q Consensus 627 ~~v~--------~s~~~~~l~~~~~dg~i~iw~~ 652 (1093)
..++ |+|||.++++++.++.+++|++
T Consensus 241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 5666 9999998999999999999998
No 162
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=1.6e-18 Score=197.35 Aligned_cols=221 Identities=12% Similarity=0.038 Sum_probs=160.4
Q ss_pred CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE-
Q 001352 335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG- 413 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la- 413 (1093)
...++.+++++++. ++++|+.++ |+||+......... ...+.. ............|...|.+++|+|+|++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNK---PGDDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCC---TTCCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcc---cccCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34789999999998 577888777 89988643211000 000000 000000011224677899999999999999
Q ss_pred ---EEEcCCEEEEEEccCC--------CcccceEEeccccccEEEEEeeCC-CCcEEEEEEcCCCcEEEEECCCCceeEE
Q 001352 414 ---VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYS 481 (1093)
Q Consensus 414 ---s~~~d~~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~~~~s~d-~~~l~l~s~~~d~~i~vwd~~~~~~~~~ 481 (1093)
+|+.|++|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||+.++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7788999999999765 222233456789999999999998 56 899999999999999999988777
Q ss_pred eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-------CceEEEEEccCCCEEEEEecCC--
Q 001352 482 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-------LGCTRMAYSANGRRLFSCGTSK-- 552 (1093)
Q Consensus 482 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-------~~v~~~~~s~d~~~l~~~~~~~-- 552 (1093)
..+|...|.+++|++ +|.+|++|+.||.|++||.+ ......+..+. ..+.+++|++++.++++.....
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 778999999999965 57899999999999999998 44444443332 2789999999988887654321
Q ss_pred -CCceeEEEEeCCCC
Q 001352 553 -EGESFLVEWNESEG 566 (1093)
Q Consensus 553 -~~~~~i~iwd~~~~ 566 (1093)
+....+++|++...
T Consensus 265 ~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 265 LETSPDVVMALLPKK 279 (434)
T ss_dssp SSSCCEEEEEECCCT
T ss_pred cCCCCceEEEEeccC
Confidence 11234899998764
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.80 E-value=2e-17 Score=184.27 Aligned_cols=297 Identities=9% Similarity=0.017 Sum_probs=197.7
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecc
Q 001352 497 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 575 (1093)
Q Consensus 497 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 575 (1093)
..++.++++++.++.|++||+.+++....+..+. ..+..++|+|+|++++++.. .++.|.+||+.+++.+..+...
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESC
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcc
Confidence 4466789999999999999999887776665443 25778999999997776542 2567999999999887776542
Q ss_pred ccc---CCCeEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCce---EEEEecCCCCCCCceEEEecCCCE
Q 001352 576 QLQ---HNSVSVVHFDTAKDQILAAGDD------------HVIKIWDMNKVQL---LTTIDAGGGLPENPRICFNKNGTL 637 (1093)
Q Consensus 576 ~~~---~~~v~~v~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~---~~~~~~~~~~~~v~~v~~s~~~~~ 637 (1093)
... ...+..++|+|+++++++++.+ +.|.+||+.+++. +...... ..+.+++|+|+|+
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGS- 160 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSC-
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC---CcccceeECCCCc-
Confidence 200 1237789999999999998865 8999999998543 3344333 2478899999999
Q ss_pred EEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceeccee
Q 001352 638 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 717 (1093)
Q Consensus 638 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 717 (1093)
+++++ +.|.+||..+++....+........ .+. .+ ..+.+|...
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~--~~~---------------------~~-----------~~~~~~~~~ 204 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRK--GYS---------------------AP-----------DVLYFWPHQ 204 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECSTTCCCT--TBC---------------------CC-----------BCCCCCCCC
T ss_pred EEEcc--CcEEEEeCCCCceeccccccccCCc--ccc---------------------Cc-----------cceeeecCC
Confidence 55553 4499999988766554432110000 000 00 111222211
Q ss_pred eccCccccccccCccccccceEEEEeecCCceE-----------EEeeccceeEEeeecCcccCcCcccccccCCcccCC
Q 001352 718 FARPSECQSLLLPSKVKANKISRLTYNNGGQAI-----------FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 786 (1093)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l-----------~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1093)
.... .......+++++++... ..-..++.+.+|++.
T Consensus 205 ~~~~------------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 251 (349)
T 1jmx_B 205 SPRH------------EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA--------------------- 251 (349)
T ss_dssp CTTC------------EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---------------------
T ss_pred Ccce------------eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc---------------------
Confidence 0000 00122345555544211 111222333333321
Q ss_pred CCCCceeeccCCCCCCCCCeeEEEEcc-CCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeC
Q 001352 787 RHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 865 (1093)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~ 865 (1093)
.+...+..++++| ||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++++.
T Consensus 252 --------------~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~ 314 (349)
T 1jmx_B 252 --------------DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGT 314 (349)
T ss_dssp --------------ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESB
T ss_pred --------------cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecC
Confidence 1345678999999 99999988 89999999999998888763 34577999999 8888888888
Q ss_pred CCeEEEEEcCCcceeeecccc
Q 001352 866 DSTILIYNARSSEVISKLEGH 886 (1093)
Q Consensus 866 dg~i~iwd~~~~~~~~~l~~h 886 (1093)
++.|.+||+.+++.+..+...
T Consensus 315 ~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 315 FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp SSEEEEEETTTTEEEEEEECS
T ss_pred CCeEEEEeccccceeeeeecC
Confidence 999999999999888777644
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=1.1e-17 Score=189.53 Aligned_cols=295 Identities=11% Similarity=0.018 Sum_probs=198.6
Q ss_pred ecCCCCCeEE-----EEECCCCCEEEEEEc-CC--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC
Q 001352 393 VRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 464 (1093)
Q Consensus 393 ~~~h~~~V~~-----v~~s~dg~~las~~~-d~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~ 464 (1093)
+..|...... .+|||||++||+++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5566666666 899999999999987 66 48888998876433 2345555566788999999 7888888
Q ss_pred CCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEe----------------------cCCeEEEEEcCCCCc
Q 001352 465 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------------------VDGKIKAWLYDSLGA 522 (1093)
Q Consensus 465 d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------------------~dg~i~vwd~~~~~~ 522 (1093)
++.|++||+.+++....+..+...+....+..++++.+++... .++.|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 8999999999998877777666666555554467777777432 346799999988764
Q ss_pred eEEecCCCCceEEEEEcc-CCCEEEEEecCCC--CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeC
Q 001352 523 RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 599 (1093)
Q Consensus 523 ~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 599 (1093)
... ..+...+..++|+| ||+.|+.+..... ....|.++|..++.......... ...+....|+|||+.|+..+.
T Consensus 181 ~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 181 TVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE--GESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp EEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT--TEEEEEEEECTTSSCEEEEEE
T ss_pred EEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC--CcccccceECCCCCEEEEEec
Confidence 443 34455788999999 9999988765321 14468889987665443333221 124778899999998866442
Q ss_pred -CC----cEEEEECCCCceEEEEecCCC--C-CCCceEEEecCCCEEEEE---------ECCCeEEEEEcCCCceeeecc
Q 001352 600 -DH----VIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRIKILETPESNSVDAAG 662 (1093)
Q Consensus 600 -dg----~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~ 662 (1093)
++ .|++||+.+++.......... . ......+|+|||+.|+.. ..+..|++|++.+++. ..+.
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~ 336 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVA 336 (388)
T ss_dssp ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEE
T ss_pred CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEec
Confidence 22 399999999875443322210 0 012335799999988864 4467899999987654 2333
Q ss_pred cccc-----------cceeeeecCCCceeeeeccCCceEecCCCCCCCccceeec-ccccceecceee
Q 001352 663 VLSD-----------NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE-AENKSEVEKPLF 718 (1093)
Q Consensus 663 ~~~~-----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~-~d~~i~~w~~~~ 718 (1093)
.+.. .+..++| +|||+.++..+ .++...+|.+..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~----------------------spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 337 RHDTSWKVFEGDRQVTHPHPSF----------------------TPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp ECCCCCCCBTTBSSTTCCCCEE----------------------CTTSSEEEEEECTTSSCEEEEEEC
T ss_pred cccCcccccccccccCCCCccC----------------------CCCCCEEEEEecCCCceeEEEEEC
Confidence 2222 2333333 57887776544 567777877653
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=3.3e-17 Score=183.21 Aligned_cols=249 Identities=9% Similarity=0.104 Sum_probs=169.4
Q ss_pred CCeeEEEEccCCCEEEEEeCCeEEEEEcc-CceeEEEECC-CCCCeEEEEEcCCCCCE--EEEEe-------------CC
Q 001352 804 EAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNNV--IAIGM-------------DD 866 (1093)
Q Consensus 804 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d~~~--lasg~-------------~d 866 (1093)
..+..++|+|||++|++++.+.|.+|++. +++....... ..+...+++|+| ++++ ++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 45778999999999988886699999997 7876543321 112356789999 8884 55553 68
Q ss_pred CeEEEEEcC-Ccceeeecc----cccCCeEEEEEeCCCCEEEEEeC-CCcEEEEeCC-CCceeeeeeeecCCCcccCCCC
Q 001352 867 STILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPS 939 (1093)
Q Consensus 867 g~i~iwd~~-~~~~~~~l~----~h~~~V~~l~~s~dg~~l~s~s~-dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 939 (1093)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|++. +++......+.... + ...
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GDH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TCC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CCC
Confidence 999999997 466544443 24567999999999998887664 6789999998 66543222222111 0 125
Q ss_pred ceEEEEccCCCEEEEEe--CCeEEEEEcC--Ccceee---ee--ec----CCCC------CEEEEE-EccCCCEEEEEeC
Q 001352 940 ETHIQFHKDQTRFLLVH--ETHLAIYEAE--ELTCLK---QW--FP----ISSV------PISQAT-FSCDCRMVFTSFV 999 (1093)
Q Consensus 940 v~~~~~s~dg~~l~~~~--d~~i~vwd~~--~~~~~~---~~--~~----~h~~------~v~~~~-fs~dg~~l~t~~~ 999 (1093)
+..++|+|||++|+++. ++.+.+|++. +|+... .+ .. +|.. .+..++ |||||++|+++..
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 78999999999998853 5789999875 565421 11 11 1222 488999 9999999887764
Q ss_pred CC------cEEEEEcC-CCceEEEeccccccCCCCCCCccceeEEEeCCC--CCCEEEEEeCC-CcEEEEecCCC
Q 001352 1000 DG------TLSIHEAS-NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTN-GEVYVIEPNEP 1064 (1093)
Q Consensus 1000 dg------~v~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~~~~d-g~v~~w~~~~~ 1064 (1093)
+. +|.+|++. ++++........... . .+..++|+|. |+++|++++.+ ++|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~-----~--~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT-----S--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSS-----C--CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCC-----C--CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 32 89999996 566443211011011 1 1224678884 47889888875 89999998654
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=1.1e-16 Score=177.63 Aligned_cols=297 Identities=11% Similarity=0.127 Sum_probs=202.5
Q ss_pred CCCceEEEEE-----ccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEc--
Q 001352 345 PVQHTLLLVG-----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-- 417 (1093)
Q Consensus 345 pdg~~llasg-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~-- 417 (1093)
+++++++++. ..|+.|.+||..+++.+.. +..+..+ .++|||||++|+++..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~ 71 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYH 71 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecc
Confidence 4666655543 2378999999999987754 3334444 8999999999999863
Q ss_pred --------CCEEEEEEccCCCcccceEEecc---ccccEEEEEeeCCCCcEEEEEEc--CCCcEEEEECCCCceeEE-ee
Q 001352 418 --------KHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYS-FE 483 (1093)
Q Consensus 418 --------d~~i~iwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~~-~~ 483 (1093)
+++|.+||..+++.+..+..... +......++|+|||+ +|+++. .+++|.+||+.+++.+.+ +.
T Consensus 72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence 66899999998876554322111 224567899999999 455544 368999999999998887 65
Q ss_pred cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE-E------ecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001352 484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-D------YDAPGLGCTRMAYSANGRRLFSCGTSKEGES 556 (1093)
Q Consensus 484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~------~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 556 (1093)
... ...+.+.|.+ ...+++.+.||.+.+|++....... . +.....+ ..+.+++++..++..+. ++
T Consensus 150 ~~~--~~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~ 221 (361)
T 2oiz_A 150 AAG--CWSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YG 221 (361)
T ss_dssp GTT--EEEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TS
T ss_pred CCC--cceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CC
Confidence 322 1223344433 2578889999999999987533322 1 1111112 23345677877776654 45
Q ss_pred eEEEEeCCCCeee--eeeeccc---cc----CCCeEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceEEE
Q 001352 557 FLVEWNESEGAIK--RTYQGLQ---LQ----HNSVSVVHFDTAKDQILAAGD-----------DHVIKIWDMNKVQLLTT 616 (1093)
Q Consensus 557 ~i~iwd~~~~~~~--~~~~~~~---~~----~~~v~~v~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~ 616 (1093)
.|+++|...+... ..+.... .. ......++|+|++++++++.. .+.|.+||+.+++.+..
T Consensus 222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~ 301 (361)
T 2oiz_A 222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR 301 (361)
T ss_dssp EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence 6999998755321 2211000 00 011123689999988887643 35899999999999999
Q ss_pred EecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC--ceeeecccccccceeeeecCCC
Q 001352 617 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPIS 677 (1093)
Q Consensus 617 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 677 (1093)
+..+. ...++|+|||++|+++.. +.|.+||..++ +.+..+.........++++|++
T Consensus 302 i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 302 IPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVG 359 (361)
T ss_dssp EECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCS
T ss_pred EecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCC
Confidence 98764 789999999999998887 99999999999 8887765555666667776543
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=4.7e-16 Score=172.62 Aligned_cols=313 Identities=10% Similarity=0.097 Sum_probs=209.3
Q ss_pred CccEEEEEe------cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEec------CCCCceeEEEEeCCCC
Q 001352 499 NIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEG 566 (1093)
Q Consensus 499 ~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~------~~~~~~~i~iwd~~~~ 566 (1093)
++.++++.. .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 455565553 4789999999888877766655444 8999999999998863 1223567999999999
Q ss_pred eeeeeeecccc---cCCCeEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceEEE-EecCCCCCCCceEEEecCC-CEEE
Q 001352 567 AIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLA 639 (1093)
Q Consensus 567 ~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~ 639 (1093)
+.+..+..... .......++++|+|++++++.. +++|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 88887764310 1235677899999999999763 68999999999988877 65432 2335677765 6788
Q ss_pred EEECCCeEEEEEcCC-CceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceee
Q 001352 640 VIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 718 (1093)
Q Consensus 640 ~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~ 718 (1093)
+.+.||.+.+|+... ++...... ...+|+...
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~-----------------------------------------------~~~~~~~~~ 200 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR-----------------------------------------------SKQMFSVKD 200 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE-----------------------------------------------CCCCSCTTT
T ss_pred EECCCCcEEEEEECCCCcEeeecc-----------------------------------------------ccceEcCCC
Confidence 888999999998764 22221100 001111100
Q ss_pred ccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCC
Q 001352 719 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 798 (1093)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1093)
.. ..+.+++++..++..+.++.+.++++....... +..|........ ...
T Consensus 201 -----------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~---~~~ 250 (361)
T 2oiz_A 201 -----------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDK---AKN 250 (361)
T ss_dssp -----------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHH---HTT
T ss_pred -----------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccc---ccc
Confidence 00 011224555555555666777777764321100 000110000000 000
Q ss_pred CCCCCCCeeEEEEccCCCEEEEEe------------CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCC
Q 001352 799 DSNSQEAVPCFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 866 (1093)
Q Consensus 799 ~~~~~~~v~~l~~s~dg~~la~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d 866 (1093)
. .......++|+||++.+.++. .+.|.+||+.+++.+.++..+. +.+++|+| |+++|+++..
T Consensus 251 ~--~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~- 324 (361)
T 2oiz_A 251 W--VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG- 324 (361)
T ss_dssp C--EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-
T ss_pred c--ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-
Confidence 0 011122378999988777653 2479999999999999998776 99999999 8889998887
Q ss_pred CeEEEEEcCCc--ceeeecccccCCeEEEEEeCCCC
Q 001352 867 STILIYNARSS--EVISKLEGHSKRVTGLVFSDALN 900 (1093)
Q Consensus 867 g~i~iwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~ 900 (1093)
+.|.+||..++ +.+..+..+......++++|||+
T Consensus 325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999999 99988877778889999999986
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=1.5e-16 Score=177.78 Aligned_cols=250 Identities=9% Similarity=0.057 Sum_probs=172.6
Q ss_pred CCCCeEEEEECCCCCEEEEEEcCCEEEEEEcc-CCCcccceEEeccccccEEEEEeeCCCCcEEEEEEc-----------
Q 001352 396 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------- 463 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~----------- 463 (1093)
+...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 34568899999999999999888 89999997 665332 1121111 235568999999853355553
Q ss_pred --CCCcEEEEECC-CCceeEEee----cCCCCeEEeeecccCCccEEEEEe-cCCeEEEEEcC-CCCceE--Eec--CCC
Q 001352 464 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARV--DYD--APG 530 (1093)
Q Consensus 464 --~d~~i~vwd~~-~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~vwd~~-~~~~~~--~~~--~~~ 530 (1093)
.++++.+|++. +|+....+. .+...+.+++|+ +||++++++. .++.|++|+++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s--pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD--PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC--CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 576654443 245678888885 4667777765 46899999998 554432 232 235
Q ss_pred CceEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeeee---eeecccc----cCC------CeEEEE-EcCCCCEE
Q 001352 531 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQL----QHN------SVSVVH-FDTAKDQI 594 (1093)
Q Consensus 531 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~~----~~~------~v~~v~-~~~~~~~l 594 (1093)
..+..++|+|||++++++.. .++.|.+|+.. +++... .+..... +.. .+..++ |+|+|+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 67899999999999988764 24568887654 565421 2221110 011 478899 99999998
Q ss_pred EEEeCC-C-----cEEEEECC-CCceEEE---EecCCCCCCCceEEEec---CCCEEEEEECC-CeEEEEEcCCC
Q 001352 595 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES 655 (1093)
Q Consensus 595 ~~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~~~~~d-g~i~iw~~~~~ 655 (1093)
+++..+ + .|.+|++. +++.... .... ......++|+| +|++|+++..+ +.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876543 2 89999996 6665432 2222 22367899999 89999998864 89999998765
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=5.4e-17 Score=184.30 Aligned_cols=283 Identities=10% Similarity=-0.024 Sum_probs=186.3
Q ss_pred CceeeeecCCCceEEEEEccC--CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCC-eEEEEECCCCCEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWSPDGSLLG 413 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~s~dg~~la 413 (1093)
.+..++|||||++++++...+ ..|.+||+.+++... +..+... ...+.|||||++|+
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~--------------------l~~~~~~~~~~~~~spdg~~l~ 96 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ--------------------LTEGKGDNTFGGFISTDERAFF 96 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE--------------------CCCSSCBCTTTCEECTTSSEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE--------------------eecCCCCccccceECCCCCEEE
Confidence 488999999999755555443 368888998886543 2223333 33478999999999
Q ss_pred EEEcCCEEEEEEccCCCcccceEEeccccccEEE-------------------EEeeCCCCcEEEEEE-----cCCCcEE
Q 001352 414 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQISVITC-----GDDKTIK 469 (1093)
Q Consensus 414 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~-------------------~~~s~d~~~l~l~s~-----~~d~~i~ 469 (1093)
+++.++.|++||+.+++... ....+...... ++|+|+++. ++.. ..+..|.
T Consensus 97 ~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~ 171 (396)
T 3c5m_A 97 YVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLI 171 (396)
T ss_dssp EEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEE
T ss_pred EEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEE
Confidence 99999999999999876432 22223332222 356788873 3333 4567899
Q ss_pred EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecC------CeEEEEEcCCCCceEEecCC-CCceEEEEEccCC
Q 001352 470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANG 542 (1093)
Q Consensus 470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~-~~~v~~~~~s~d~ 542 (1093)
+||+.+++..... .+...+..+.|++. ++..|+..+.+ ..|.+||+............ ...+..++|+|||
T Consensus 172 ~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg 249 (396)
T 3c5m_A 172 KVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDG 249 (396)
T ss_dssp EEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTS
T ss_pred EEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCC
Confidence 9999998865544 46677888888652 45556655543 35888887655433322211 2357889999999
Q ss_pred CEEEEEecCC-CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcC-CCCEEEEEe----------------CCCcEE
Q 001352 543 RRLFSCGTSK-EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG----------------DDHVIK 604 (1093)
Q Consensus 543 ~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~----------------~dg~i~ 604 (1093)
++|+..+... .....|++||+.+++....... . ... +.|+| +++.+++++ .++.|+
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~ 323 (396)
T 3c5m_A 250 SAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLY 323 (396)
T ss_dssp SCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEE
T ss_pred CEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEE
Confidence 9888775422 1225599999998876543322 1 123 88999 999888754 347899
Q ss_pred EEECCCCceEEEEecCCCC--------CCCceEEEecCCCEEEEEEC-CCeEEEEEc
Q 001352 605 IWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKILET 652 (1093)
Q Consensus 605 iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~ 652 (1093)
+||+.+++........... ..+..++|+|+|+.|+..+. ++...+|.+
T Consensus 324 ~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 324 VLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp EEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 9999888764333222110 02466899999999888775 455555543
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.73 E-value=9.7e-15 Score=169.86 Aligned_cols=329 Identities=11% Similarity=0.106 Sum_probs=223.0
Q ss_pred ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceEEEEecCCCCCCCceEEEe
Q 001352 555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
++.|.++|..+++.+..+... ..+..+.|+||++++++++.++.|.+||+. +++.+..+..... ...++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~---P~~ia~s 248 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---ARSIETS 248 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---EEEEEEC
T ss_pred CCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC---CceeEEc
Confidence 667999999999998887653 356789999999999999999999999996 8888888775432 5789999
Q ss_pred ----cCCCEEEEEEC-CCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001352 633 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 707 (1093)
Q Consensus 633 ----~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~ 707 (1093)
|||++++++.. ++++.++|..+.+.+..+......+....+.
T Consensus 249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~--------------------------------- 295 (567)
T 1qks_A 249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH--------------------------------- 295 (567)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE---------------------------------
T ss_pred cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccccc---------------------------------
Confidence 69998887765 5999999988876665443211000000000
Q ss_pred cccceecceeeccCccccccccCccccccceEEEEeecCCceEEEee-ccceeEEeeecCcccCcCcccccccCCcccCC
Q 001352 708 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 786 (1093)
Q Consensus 708 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1093)
....+..+.+++++..++... ..|.+.++++.....
T Consensus 296 --------------------------p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~----------------- 332 (567)
T 1qks_A 296 --------------------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN----------------- 332 (567)
T ss_dssp --------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----------------
T ss_pred --------------------------CCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-----------------
Confidence 112456677777766554443 447887777543210
Q ss_pred CCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECC-----CCCCeEEEEEcCCCCCE
Q 001352 787 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNV 859 (1093)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~ 859 (1093)
+..... .......++.|+|||++++++. ++.|.++|+.+++.+..+.. |.+.-..+ ++|+.+.+
T Consensus 333 -----~~v~~i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v 403 (567)
T 1qks_A 333 -----LKTTEI---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPV 403 (567)
T ss_dssp -----EEEEEE---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEE
T ss_pred -----ceeeee---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcE
Confidence 111001 1233456789999999998886 58999999999998877654 32222222 57733555
Q ss_pred EEEEe-CCCeEEEEEcCC-------cceeeecccccCCeEEEEEeCCCCEEEEEeC-------CCcEEEEeCCCCce---
Q 001352 860 IAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGI--- 921 (1093)
Q Consensus 860 lasg~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-------dg~i~iwd~~~~~~--- 921 (1093)
.+++. .++.|.++|..+ .+.+.++......-..+..+|++++|.+... ..+|.++|+.+.+.
T Consensus 404 ~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~ 483 (567)
T 1qks_A 404 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS 483 (567)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS
T ss_pred EEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccccc
Confidence 55554 468999999988 5677777755444355788999999887663 35899999987521
Q ss_pred e-eeeeeecC--CCcccCCCCceEEEEccCCCEEEEE-e-----CCeEEEEEcCCcceeeeee
Q 001352 922 Q-TCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWF 975 (1093)
Q Consensus 922 ~-~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~l~~~-~-----d~~i~vwd~~~~~~~~~~~ 975 (1093)
. ....+... .+-......+..+.|+|+|+++.++ . ++.|.|+|..+++....+.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 484 DPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 1 11222210 0000011358899999999998874 2 6899999999998877644
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=1.4e-15 Score=185.34 Aligned_cols=294 Identities=10% Similarity=0.002 Sum_probs=194.9
Q ss_pred HhhccCCCCceeeeecCCCceEEEEE--ccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeE-----
Q 001352 329 QTLIEGSSSPMSMDFHPVQHTLLLVG--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN----- 401 (1093)
Q Consensus 329 ~~l~~h~~~V~~~~~spdg~~llasg--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~----- 401 (1093)
..+.+|...|..++|++++- +++++ +.++...||....+..... +..|...+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~ 76 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFE 76 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGG
T ss_pred HHHhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccc
Confidence 45678999999999999875 35565 5578899999654443332 445555555
Q ss_pred ----EEEEC--CCCCE-EEEEEc-CCEEEEEEcc--C-CCcccceEEecc-----ccccEEEEEeeCCCCcEEEEEEcCC
Q 001352 402 ----RVVWS--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD 465 (1093)
Q Consensus 402 ----~v~~s--~dg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~~~~-----h~~~v~~~~~s~d~~~l~l~s~~~d 465 (1093)
..+|+ |||++ |+.++. +..|.+|++. + ++ .+ .+.. |...+.+++|+|||+ .|++++.|
T Consensus 77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~ 150 (662)
T 3azo_A 77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEE 150 (662)
T ss_dssp TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEE
T ss_pred cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEec
Confidence 56565 99999 887654 4556666665 2 33 22 3444 677899999999999 67766665
Q ss_pred ----------CcEEEEECCC------CceeEEee-cCCCCeEEeeecccCCccEEEEEecCC--------eEEEEEcC-C
Q 001352 466 ----------KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDG--------KIKAWLYD-S 519 (1093)
Q Consensus 466 ----------~~i~vwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg--------~i~vwd~~-~ 519 (1093)
..|++||+.+ ++ ...+. .+...+..++| ++||++|+.++.++ .|++||+. +
T Consensus 151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 151 FTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp ECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred ccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 5899999988 54 44555 55666777777 55788898887653 79999998 4
Q ss_pred C---CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCC-----CeEEEEEcCCC
Q 001352 520 L---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAK 591 (1093)
Q Consensus 520 ~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~v~~~~~~ 591 (1093)
+ ........+...+..++|+|||++++++.. ++...|++||..+++.......+..... .+..++|+|++
T Consensus 228 g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~ 305 (662)
T 3azo_A 228 GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG 305 (662)
T ss_dssp SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred CcccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence 5 333333444678899999999995555433 3344788999878876555443321100 15678999999
Q ss_pred CEEEEEeCCCcEEEE--ECCCCceEEEEecCCCCCCCceEEEecCCCE--EEEEECCC--eEEEEEcCCCcee
Q 001352 592 DQILAAGDDHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSV 658 (1093)
Q Consensus 592 ~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg--~i~iw~~~~~~~~ 658 (1093)
..+++++. +.++|| |..+++ +..+..+. ..+..+ +++++.. ++.++.+. .|.++++.+++..
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPESGE-LVDAAGPW--TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEEc-CccEEEEEECCCCc-EEEecCCC--CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 99999888 999999 655555 45554432 234444 1444443 34445554 4555566666543
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=4e-14 Score=164.74 Aligned_cols=325 Identities=13% Similarity=0.136 Sum_probs=219.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC--CCceeeecccccc
Q 001352 589 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSD 666 (1093)
Q Consensus 589 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~ 666 (1093)
|.+..+++...++.|.++|..+++.+..+.... .+..++|+|||+++++++.++.|.+||+. +.+.+..+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---- 237 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---- 237 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----
Confidence 344556667789999999999999999887543 35689999999999999999999999985 443332221
Q ss_pred cceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEee--
Q 001352 667 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-- 744 (1093)
Q Consensus 667 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-- 744 (1093)
.......++|+
T Consensus 238 -------------------------------------------------------------------~G~~P~~ia~s~~ 250 (567)
T 1qks_A 238 -------------------------------------------------------------------IGSEARSIETSKM 250 (567)
T ss_dssp -------------------------------------------------------------------CCSEEEEEEECCS
T ss_pred -------------------------------------------------------------------cCCCCceeEEccc
Confidence 01124568888
Q ss_pred --cCCceEEEeecc-ceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCC------CC-CCCeeEEEEccC
Q 001352 745 --NGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS------NS-QEAVPCFALSKN 814 (1093)
Q Consensus 745 --~~g~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~v~~l~~s~d 814 (1093)
|||++++++... +.+.++|.... +.+......+. .| ...+..+.++++
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~----------------------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~ 308 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETL----------------------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHY 308 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTC----------------------CEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCC----------------------cEEEEEeccccccccccccCCCceEEEEEcCC
Confidence 689888777654 78888774332 11211111100 01 236778999998
Q ss_pred CCEEEEEe--CCeEEEEEccCceeEE--EECCCCCCeEEEEEcCCCCCEEEEEe-CCCeEEEEEcCCcceeeeccc----
Q 001352 815 DAYLFSAS--GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG---- 885 (1093)
Q Consensus 815 g~~la~~~--dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~i~iwd~~~~~~~~~l~~---- 885 (1093)
+..+++.. .|.|.++|..+.+... .+. .......+.|+| ++++++++. .++.|.++|+.+++.+..+.-
T Consensus 309 ~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 309 RPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 87666654 4999999987654322 222 344577889999 888776655 578999999999987765542
Q ss_pred -ccCCeEEEEEeCCCCEE-EEEe-CCCcEEEEeCCCCc-----eeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe-
Q 001352 886 -HSKRVTGLVFSDALNIL-VSSG-GDAQIFVWDVDGWG-----IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH- 956 (1093)
Q Consensus 886 -h~~~V~~l~~s~dg~~l-~s~s-~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~- 956 (1093)
|.+.-.. -++|++..+ +++. .++.|.++|..+.+ ......+....+ .-..+.++||++++.+..
T Consensus 387 Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~------g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 387 PHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG------GSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp BCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS------CCCCEECCTTCSEEEEECT
T ss_pred CCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC------CCEEEEeCCCCCeEEEecC
Confidence 4332222 257875544 4443 46899999998732 111122222211 234578999999999854
Q ss_pred -------CCeEEEEEcCCc-----cee-eeeec-------CCCCCEEEEEEccCCCEEEEEe-----CCCcEEEEEcCCC
Q 001352 957 -------ETHLAIYEAEEL-----TCL-KQWFP-------ISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNL 1011 (1093)
Q Consensus 957 -------d~~i~vwd~~~~-----~~~-~~~~~-------~h~~~v~~~~fs~dg~~l~t~~-----~dg~v~vwd~~~~ 1011 (1093)
.++|.|+|+.+. ... ..+.. ....++..+.|++||+.+..+. .++.|.|+|..++
T Consensus 460 ~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 460 LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 358999999877 211 22211 1245789999999999877663 3789999999999
Q ss_pred ceEEEec
Q 001352 1012 EVQCRIL 1018 (1093)
Q Consensus 1012 ~~~~~~~ 1018 (1093)
++..++.
T Consensus 540 ~~~~~i~ 546 (567)
T 1qks_A 540 ELKHVIK 546 (567)
T ss_dssp EEEEEEC
T ss_pred eEEEEeC
Confidence 9998886
No 173
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.70 E-value=4.1e-15 Score=165.22 Aligned_cols=262 Identities=10% Similarity=0.115 Sum_probs=178.9
Q ss_pred CceeeeecCCCceEEEEEc--------cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 337 SPMSMDFHPVQHTLLLVGT--------NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
.+..+++ ||++++.+.. .++.|.+||+.+++... + ..+.+++||||
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD 69 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD 69 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence 6778888 9987555431 25679999999886432 2 46888999999
Q ss_pred CCEEEEEEcC---C--EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC-------------------
Q 001352 409 GSLLGVAYSK---H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------------------- 464 (1093)
Q Consensus 409 g~~las~~~d---~--~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~------------------- 464 (1093)
|++||+++.+ + .|.+||+.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~ 142 (347)
T 2gop_A 70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWFD 142 (347)
T ss_dssp SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC--
T ss_pred CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceeec
Confidence 9999988754 3 47788888765332 223334 999999999994 555442
Q ss_pred --------CCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCC-------eEEEEEcCCCCceEEecCC
Q 001352 465 --------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAP 529 (1093)
Q Consensus 465 --------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~vwd~~~~~~~~~~~~~ 529 (1093)
...|.+||+.+++.+..+.. . .+..++|+ +|| +++++..++ ...+|.++ ......+..+
T Consensus 143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~ 216 (347)
T 2gop_A 143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK 216 (347)
T ss_dssp -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE
T ss_pred CcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEeccC
Confidence 25799999999887555654 3 67777885 577 777776542 44556555 3333333333
Q ss_pred CCceEEEEEccCCCEEEEEecCCC----CceeEEEEeCCCCeeeeeeecccccCCCeEE-EEEcCCCCEEEEEeCCCcEE
Q 001352 530 GLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIK 604 (1093)
Q Consensus 530 ~~~v~~~~~s~d~~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-v~~~~~~~~l~~~~~dg~i~ 604 (1093)
..+..+ +|||++|+..+.... ....|++|| +++.......+. ..+.. +.|+ ++ .+++++.++.++
T Consensus 217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN 286 (347)
T ss_dssp -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence 344443 999999988764321 235789999 666554444444 56775 8999 88 888899999999
Q ss_pred EEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeE-EEEEcC
Q 001352 605 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETP 653 (1093)
Q Consensus 605 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i-~iw~~~ 653 (1093)
+| +.+++....... ...+.+++|+| .++++++.++.. .+|.+.
T Consensus 287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 876665444432 23578899999 677777777654 777765
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=1.5e-15 Score=185.12 Aligned_cols=209 Identities=9% Similarity=0.010 Sum_probs=144.4
Q ss_pred eccccccEEEEEeeCCCCcEEEEEE--cCCCcEEEEECCCCceeEEeecCCCCeE---------EeeecccCCccE-EEE
Q 001352 438 IDAHVGNVNDLAFSAPCKQISVITC--GDDKTIKVWDAVTGSRTYSFEGHGAPVY---------SLCPHAKENIHF-IFS 505 (1093)
Q Consensus 438 ~~~h~~~v~~~~~s~d~~~l~l~s~--~~d~~i~vwd~~~~~~~~~~~~h~~~v~---------~~~~~~~~~~~~-l~s 505 (1093)
+.+|...+..++|++++- ++++. +.++...||....+.....+..|...+. ...|+.++||+. |+.
T Consensus 19 ~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 557889999999997754 67777 6688999999766666777777776655 455553467777 665
Q ss_pred Eec-CCeEEEEEcC--CCCceEEecC-----CCCceEEEEEccCCCEEEEEecCC------CCceeEEEEeCCC------
Q 001352 506 ISV-DGKIKAWLYD--SLGARVDYDA-----PGLGCTRMAYSANGRRLFSCGTSK------EGESFLVEWNESE------ 565 (1093)
Q Consensus 506 ~~~-dg~i~vwd~~--~~~~~~~~~~-----~~~~v~~~~~s~d~~~l~~~~~~~------~~~~~i~iwd~~~------ 565 (1093)
++. +..|.++++. .......+.. +...+..++|+|||+.|++++.+. .+...|++||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 543 4566666654 2033444444 455788999999999999887531 2236899999988
Q ss_pred Ceeeeeee-cccccCCCeEEEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---ceEEEEecCCCCCCCceEEEe
Q 001352 566 GAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMN-KV---QLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 566 ~~~~~~~~-~~~~~~~~v~~v~~~~~~~~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~~~v~~v~~s 632 (1093)
++.. .+. .+. ..+..++|+|||++|+.++.+ ..|++||+. ++ +.......+ ...+..++|+
T Consensus 177 ~~~~-~l~~~~~---~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~--~~~~~~~~~s 250 (662)
T 3azo_A 177 SAVR-ELSDDAH---RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP--EEAIAQAEWA 250 (662)
T ss_dssp GGSE-ESSCSCS---SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET--TBCEEEEEEC
T ss_pred Ccee-EEEecCC---CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC--CceEcceEEC
Confidence 5543 333 333 567788999999999987754 379999998 56 333333322 2347889999
Q ss_pred cCCCEEEEEECCC--eEEEEEcCC
Q 001352 633 KNGTLLAVIANEN--RIKILETPE 654 (1093)
Q Consensus 633 ~~~~~l~~~~~dg--~i~iw~~~~ 654 (1093)
|||++++++..++ .|.+|+..+
T Consensus 251 pdg~l~~~~~~~~~~~l~~~~~~~ 274 (662)
T 3azo_A 251 PDGSLIVATDRTGWWNLHRVDPAT 274 (662)
T ss_dssp TTSCEEEEECTTSSCEEEEECTTT
T ss_pred CCCeEEEEECCCCCeEEEEEECCC
Confidence 9999777777777 444444433
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.69 E-value=9.2e-16 Score=174.09 Aligned_cols=244 Identities=9% Similarity=-0.013 Sum_probs=165.6
Q ss_pred eEEEEECCCCCEEEEEEcC---CEEEEEEccCCCcccceEEeccccccE-EEEEeeCCCCcEEEEEEcCCCcEEEEECCC
Q 001352 400 VNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVT 475 (1093)
Q Consensus 400 V~~v~~s~dg~~las~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~ 475 (1093)
+.+++|||||++|+.+... ..|.+||+.+++.. .+..+...+ ..+.|+|||+ .|+.++.++.|++||+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----QLTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----ECCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----EeecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCC
Confidence 7788999999999888553 47889999887532 233333333 3478999999 788888888999999999
Q ss_pred CceeEEeecCCCCeEE---eee--------------cccCCccEEEEE-----ecCCeEEEEEcCCCCceEEecCCCCce
Q 001352 476 GSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGC 533 (1093)
Q Consensus 476 ~~~~~~~~~h~~~v~~---~~~--------------~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~v 533 (1093)
++.......+...... +++ ..++++..++.. ..+..|.+||+.+++..... .+...+
T Consensus 112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~ 190 (396)
T 3c5m_A 112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWL 190 (396)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCE
T ss_pred CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccc
Confidence 8876655544443222 111 123344444433 35668999999887655444 345578
Q ss_pred EEEEEcc-CCCEEEEEecCCCC--ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEE
Q 001352 534 TRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKI 605 (1093)
Q Consensus 534 ~~~~~s~-d~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~i 605 (1093)
..+.|+| +++.++..+..... ...|++||+.+++......... ...+..+.|+|+|++|+.++.+ +.|++
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 8999999 88888777642210 1569999987765443333211 1357889999999988776543 44999
Q ss_pred EECCCCceEEEEecCCCCCCCceEEEec-CCCEEEEEE----------------CCCeEEEEEcCCCce
Q 001352 606 WDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESNS 657 (1093)
Q Consensus 606 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~----------------~dg~i~iw~~~~~~~ 657 (1093)
||+.+++......... .. ++|+| +|+++++++ .++.|++|++.++..
T Consensus 269 ~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 269 ANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 9999887655443221 23 89999 999888765 347899999887653
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=1e-14 Score=160.03 Aligned_cols=248 Identities=12% Similarity=0.095 Sum_probs=181.3
Q ss_pred CCCeeEEEEccCCCEEEEEeCC-------------------------eEEEEEccCceeEEEEC-CCCCCeEEEEEcCCC
Q 001352 803 QEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPHD 856 (1093)
Q Consensus 803 ~~~v~~l~~s~dg~~la~~~dg-------------------------~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d 856 (1093)
-..+.+++++|+|+++++...+ .|.+||..+++.+..+. .+......++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4568999999999999887643 69999999998887765 3446789999999 8
Q ss_pred CCEEEEEeCCCeEEEEEcCCcc-eeeec---------ccccCCeEEEEEeC-CCCEEEEEe-CCCcEEEEeCCCCceeee
Q 001352 857 NNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQTC 924 (1093)
Q Consensus 857 ~~~lasg~~dg~i~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-dg~~l~s~s-~dg~i~iwd~~~~~~~~~ 924 (1093)
++++++...++.|++|+..... .+..+ .++......++++| +++++++.+ .++.|++|+.+. +....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence 8888888889999999986442 44444 34555789999999 788888886 689999999544 32221
Q ss_pred eeeecC-----CCcccCCCCceEEEEccC-CCEEEE-EeCCeEEEEEcCCcceeeeee-cCCCCCEEEEEEcc------C
Q 001352 925 RSLQTP-----DGVMTLAPSETHIQFHKD-QTRFLL-VHETHLAIYEAEELTCLKQWF-PISSVPISQATFSC------D 990 (1093)
Q Consensus 925 ~~~~~~-----~~~~~~~~~v~~~~~s~d-g~~l~~-~~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~~~fs~------d 990 (1093)
...... .+.. .....++++|+ +.++++ ..+++|++|+..+|+.+..+. ..+...+..++|+| +
T Consensus 181 ~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~ 257 (329)
T 3fvz_A 181 WGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN 257 (329)
T ss_dssp ECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred eccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence 100000 0111 24789999999 555555 367799999999898887754 24567889999999 3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352 991 CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus 991 g~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
|..+++...+..|++|++.+++.+..+.... ...-.+..++++| ||.++++...+++|++|++..
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred CCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 3333333344589999999999887764211 1123456789999 578899999999999999854
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=1.6e-14 Score=158.62 Aligned_cols=248 Identities=11% Similarity=0.085 Sum_probs=184.4
Q ss_pred CCceeeeecCCCceEEEEEccC------------------------CcEEEEecCCCceeEEeeeeeeecccccceeeee
Q 001352 336 SSPMSMDFHPVQHTLLLVGTNV------------------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 391 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1093)
+.|.+++++|+|+ ++++...+ ++|.+||..+|+.+...
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~----------------- 85 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS----------------- 85 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence 4899999999998 57777766 47999999988876421
Q ss_pred eecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCC-cccceEEe---------ccccccEEEEEeeC-CCCcEEEE
Q 001352 392 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEI---------DAHVGNVNDLAFSA-PCKQISVI 460 (1093)
Q Consensus 392 ~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~-~~~~~~~~---------~~h~~~v~~~~~s~-d~~~l~l~ 460 (1093)
-.++-..+..++++|+|+++++...++.|++||..... .+. .+ .++......++|+| ++. +++
T Consensus 86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 12455678999999999988888889999999986542 222 33 24455789999999 677 677
Q ss_pred EEc-CCCcEEEEECCCCceeEEeecCC----------CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--
Q 001352 461 TCG-DDKTIKVWDAVTGSRTYSFEGHG----------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-- 527 (1093)
Q Consensus 461 s~~-~d~~i~vwd~~~~~~~~~~~~h~----------~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-- 527 (1093)
+.+ .++.|++|| .+|+.+..+.... .....+++.+. .+.++++...++.|++|+.++++....+.
T Consensus 160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 776 689999999 7788877774322 33788888543 25788888889999999998777766663
Q ss_pred CCCCceEEEEEccCCCEEEEEec---CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 001352 528 APGLGCTRMAYSANGRRLFSCGT---SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 604 (1093)
Q Consensus 528 ~~~~~v~~~~~s~d~~~l~~~~~---~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~ 604 (1093)
.....+..++++| +..++..+. .......|.+||..+++.+..+.....+...+..++++|+|..+++...++.|+
T Consensus 238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence 3455788999999 444443321 012245799999999999888753222236789999999997777788899999
Q ss_pred EEECCC
Q 001352 605 IWDMNK 610 (1093)
Q Consensus 605 iwd~~~ 610 (1093)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
No 178
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=3.3e-14 Score=152.93 Aligned_cols=242 Identities=10% Similarity=0.091 Sum_probs=175.3
Q ss_pred CCCCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECC------CCCCeEEEEEc-CCCCCEEEEEeC-CCeEEEE
Q 001352 802 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILIY 872 (1093)
Q Consensus 802 ~~~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s-~~d~~~lasg~~-dg~i~iw 872 (1093)
+-..+.+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..++++ + +++++++... ++.|++|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence 456788999999999888765 6899999987 666666642 33578899994 6 7777776643 8899999
Q ss_pred EcCCcceeeecc-cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCE
Q 001352 873 NARSSEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 951 (1093)
Q Consensus 873 d~~~~~~~~~l~-~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 951 (1093)
| .+++.+..+. .+...+.+++++|+|+++++...++.|.+|+..... .. .+... +.. ..+..++++++|++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~--~~~~~-~~~---~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-LH--KFGCS-KHL---EFPNGVVVNDKQEI 177 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EE--EEECT-TTC---SSEEEEEECSSSEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-EE--EeCCC-Ccc---CCcEEEEECCCCCE
Confidence 9 5677766664 345678999999999988888888999999976422 11 11111 111 24789999999997
Q ss_pred EEEE-eCCeEEEEEcCCcceeeeeec-CCCCCEEEEEEccCCCEEEEEeCCC-cEEEEEcCCCceEEEeccccccCCCCC
Q 001352 952 FLLV-HETHLAIYEAEELTCLKQWFP-ISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTS 1028 (1093)
Q Consensus 952 l~~~-~d~~i~vwd~~~~~~~~~~~~-~h~~~v~~~~fs~dg~~l~t~~~dg-~v~vwd~~~~~~~~~~~~~~~~~~~~~ 1028 (1093)
+++. .++.|.+||.. ++.+..+.. ++...+..++++++|.++++...++ .|.+|+. .++.+..+...
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-------- 247 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK-------- 247 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc--------
Confidence 7774 57899999974 555554322 2236789999999999988887776 9999995 56666665421
Q ss_pred CCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCC
Q 001352 1029 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1065 (1093)
Q Consensus 1029 ~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~ 1065 (1093)
.....+..++++| +++++++ +.|++|++|++....
T Consensus 248 ~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 248 VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCCC
T ss_pred CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEccccc
Confidence 1112456788998 5676666 679999999986543
No 179
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.68 E-value=2e-10 Score=142.29 Aligned_cols=586 Identities=9% Similarity=0.033 Sum_probs=339.4
Q ss_pred CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352 336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~ 415 (1093)
..|+++.-.++|.. -.|+.+| +..||-.+ .. .+...... . ..-....|.++...++|.+.+ |
T Consensus 43 n~v~~I~qD~~G~l--WigT~~G-L~ryDG~~---f~-----~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWi-g 104 (795)
T 4a2l_A 43 STVFSIDQDKRGNM--WFATYDG-VNKYDGYA---FT-----VYQHNEDD----P--NSIANDISRIVKTDSQGRVWI-G 104 (795)
T ss_dssp SCEEEEEECTTSCE--EEEETTE-EEEECSSC---EE-----EECCCTTC----T--TSCSCSCEEEEEECTTSCEEE-E
T ss_pred ceeEEEEEcCCCCE--EEeecCc-CcccCCCc---eE-----EEeCCCCC----C--CcccccceeEEEECCCCCEEE-E
Confidence 38999999999963 4555665 56666332 11 11100000 0 000246799999999987654 4
Q ss_pred EcCCEEEEEEccCCCcccceEEeccccc----cEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecC-CCC-e
Q 001352 416 YSKHIVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-V 489 (1093)
Q Consensus 416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h-~~~-v 489 (1093)
+.+| +..||..+++. . .+..... .|.++...++|. +.+ ++. +.|..||..+++.......+ ... |
T Consensus 105 T~~G-l~~yd~~~~~f-~---~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i 175 (795)
T 4a2l_A 105 TRDG-LSRYDEEKDIF-Q---NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTI 175 (795)
T ss_dssp ESSC-EEEEETTTTEE-E---EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCC
T ss_pred eCCc-hheeCCCCCeE-E---eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcce
Confidence 5566 89999877542 1 2221111 288898888887 333 443 45899998776543211111 112 6
Q ss_pred EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001352 490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 568 (1093)
Q Consensus 490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 568 (1093)
.++... .++ .+..++.++.+..|+..+....... ......|.++...++|.+.+.... .-+..||..+++.
T Consensus 176 ~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~-----~Gl~~~~~~~~~~ 247 (795)
T 4a2l_A 176 ASTLYR--QGD-QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEG-----AGLFLINPKTKEI 247 (795)
T ss_dssp EEEEEE--ETT-EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBS-----SCEEEEETTTTEE
T ss_pred EEEEEC--CCC-CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECC-----CCeEEEeCCCCeE
Confidence 776653 344 4555666556888887665433221 123456888888888876665422 1289999887765
Q ss_pred eeeeecc----cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-----CCCCCceEEEecCCCEEE
Q 001352 569 KRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA 639 (1093)
Q Consensus 569 ~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~ 639 (1093)
....... ......|.++...++|.. ..|+.+ .|.+||..+++......... ....|.++...++|. |.
T Consensus 248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 324 (795)
T 4a2l_A 248 KNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MW 324 (795)
T ss_dssp EEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EE
T ss_pred EEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EE
Confidence 4332211 112356999999888764 445555 58999988776544322110 123477888888886 45
Q ss_pred EEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeec
Q 001352 640 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 719 (1093)
Q Consensus 640 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~ 719 (1093)
+|+.++-|..|+..+.... .... . +.
T Consensus 325 igt~~~Gl~~~~~~~~~~~-~~~~----------~----------------------~~--------------------- 350 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIRNRFK-NIRN----------I----------------------PY--------------------- 350 (795)
T ss_dssp EEESSSCEEEECGGGGSSE-EECC----------C----------------------TT---------------------
T ss_pred EEECCCCeEEeCCCcccce-EEcC----------C----------------------CC---------------------
Confidence 5677677777775433111 0000 0 00
Q ss_pred cCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCC
Q 001352 720 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 799 (1093)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1093)
+.......|.++...++|. +..++.++.+..|+...... ..+....+. ...
T Consensus 351 ----------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~------~~~ 401 (795)
T 4a2l_A 351 ----------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE------SAR 401 (795)
T ss_dssp ----------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC------------
T ss_pred ----------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC------ccc
Confidence 0000234588888888887 55566665666665332211 001000000 000
Q ss_pred CCCCCCeeEEEEccCCC-EEEEEeCCeEEEEEccCceeEEEEC----CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001352 800 SNSQEAVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 874 (1093)
Q Consensus 800 ~~~~~~v~~l~~s~dg~-~la~~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~ 874 (1093)
.-....|.+++..++|. +.+...++.|.++|..+++...... .+...|.++...+ ++++.+ |+.+ -+.+|+.
T Consensus 402 ~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~ 478 (795)
T 4a2l_A 402 GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNP 478 (795)
T ss_dssp CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEET
T ss_pred CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeC
Confidence 00346789999999998 5554446789999998876543322 1345789999988 676555 4454 5889998
Q ss_pred CCcceeeecc------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC
Q 001352 875 RSSEVISKLE------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 948 (1093)
Q Consensus 875 ~~~~~~~~l~------~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 948 (1093)
.+++...... -+...|.++...++|++.+... .| |..|+..+++. . ..............|.++...++
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~~~~~~-~--~~~~~~~~~l~~~~i~~i~~d~~ 553 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG-LSVFKQEGLDI-Q--KASILPVSNVTKLFTNCIYEASN 553 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC-EEEEEEETTEE-E--ECCCSCSCGGGGSCEEEEEECTT
T ss_pred CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc-eEEEeCCCCeE-E--EecCCCCCCCCCCeeEEEEECCC
Confidence 8765433221 1236799999999988777554 44 88899877543 1 11000000111136889999999
Q ss_pred CCEEEEEeCCeEEEEEcCCcceeeeeecC---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCC
Q 001352 949 QTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1025 (1093)
Q Consensus 949 g~~l~~~~d~~i~vwd~~~~~~~~~~~~~---h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~ 1025 (1093)
|.+.+++.. .+..||..+++... +... ....|.++...++|.+.+++ . +-|..|+..++... .+....-++.
T Consensus 554 g~lWigT~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~~ 628 (795)
T 4a2l_A 554 GIIWVGTRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQS 628 (795)
T ss_dssp SCEEEEESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCSC
T ss_pred CCEEEEeCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCcc
Confidence 997776554 78899987765432 2211 14578899999999877754 3 45788998876543 3432332332
Q ss_pred CCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352 1026 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 1026 ~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
. .+..-++..++ +| .|..|+.+| +..++..
T Consensus 629 ~----~f~~~~~~~~~-~G-~l~~g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 629 N----QFNTASYCRTS-VG-QMYFGGING-ITTFRPE 658 (795)
T ss_dssp S----CEEEEEEEECT-TS-CEEEEETTE-EEEECGG
T ss_pred c----cCccCceeECC-CC-eEEEecCCc-eEEEcHH
Confidence 2 23233455665 34 466677776 4555653
No 180
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.66 E-value=2.6e-10 Score=141.30 Aligned_cols=535 Identities=8% Similarity=0.031 Sum_probs=319.7
Q ss_pred CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352 336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~ 415 (1093)
..|.++...++|.. -.|+. +.+..||..+++.... ... .......|.++...++|.+.+.
T Consensus 88 n~I~~i~~d~~g~l--WigT~-~Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~- 147 (795)
T 4a2l_A 88 DISRIVKTDSQGRV--WIGTR-DGLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIS- 147 (795)
T ss_dssp SCEEEEEECTTSCE--EEEES-SCEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEE-
T ss_pred cceeEEEECCCCCE--EEEeC-CchheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEE-
Confidence 47999999999973 33444 4489999887653321 000 0000011888888888876654
Q ss_pred EcCCEEEEEEccCCCcccceEEeccc-ccc-EEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-ecCCCCeEEe
Q 001352 416 YSKHIVQLYAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL 492 (1093)
Q Consensus 416 ~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~-v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~ 492 (1093)
+. +.|..||..+++..... .++ ... |.++...+++. +..+..++.|..||..+++..... ......|.++
T Consensus 148 t~-~gl~~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i 220 (795)
T 4a2l_A 148 TP-EGLIMFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI 220 (795)
T ss_dssp ET-TEEEEEETTTTEEECSS---SCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred EC-CceEEEECCCCEEEecc---CCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence 44 44899998765321100 011 123 88888888886 344555555899998777654321 1234567777
Q ss_pred eecccCCccEEEEEecCCeEEEEEcCCCCceEEecC-------CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001352 493 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 565 (1093)
Q Consensus 493 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 565 (1093)
... .++ .+..++.++-+..||..+......... ....|.++...++|...+... . -|.+||..+
T Consensus 221 ~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~~ 291 (795)
T 4a2l_A 221 LQQ--SPT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEGT 291 (795)
T ss_dssp EEE--ETT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETTT
T ss_pred EEc--CCC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCCC
Confidence 653 344 455566554588888766543332211 234689999999888766542 1 289999887
Q ss_pred Ceeeeeeec----ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC--C--CCCCCceEEEecCCCE
Q 001352 566 GAIKRTYQG----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--G--GLPENPRICFNKNGTL 637 (1093)
Q Consensus 566 ~~~~~~~~~----~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~--~~~~v~~v~~s~~~~~ 637 (1093)
+........ .......|.++...++|. +..|+.++.|..|+..++......... . ....|.+++..++|.
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~- 369 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN- 369 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-
T ss_pred CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-
Confidence 765433221 112236799999998875 566777778999987765543222111 0 123477888888776
Q ss_pred EEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceeccee
Q 001352 638 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 717 (1093)
Q Consensus 638 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~ 717 (1093)
|.+|+.++-|..|+..++......... ..
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~---------------------------------~~------------------ 398 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQE---------------------------------DE------------------ 398 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------------------------------------------------------
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecCC---------------------------------CC------------------
Confidence 555777777888887654221110000 00
Q ss_pred eccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccC
Q 001352 718 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 797 (1093)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1093)
+ . . ......|.++...++|+.|.+++.++.+.+|+...... ..+.....
T Consensus 399 ---~---~-~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------------~~~~~~~~-------- 447 (795)
T 4a2l_A 399 ---S---A-R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------------ENFNQRNS-------- 447 (795)
T ss_dssp --------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------------EEECTTTS--------
T ss_pred ---c---c-c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------------EEeecCCC--------
Confidence 0 0 0 00234578888888887455566655677766432211 11110000
Q ss_pred CCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECC------CCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001352 798 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILI 871 (1093)
Q Consensus 798 ~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~i~i 871 (1093)
......|.++...++|.+.+... +.+.+|+..+++....... ....|.++...+ ++++.+ |+. +-+..
T Consensus 448 --~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~ 521 (795)
T 4a2l_A 448 --QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSV 521 (795)
T ss_dssp --CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEE
T ss_pred --CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEE
Confidence 01346789999999998777665 5688999887755432211 235789999988 776655 444 45888
Q ss_pred EEcCCcceeeecc-------cccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEE
Q 001352 872 YNARSSEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 944 (1093)
Q Consensus 872 wd~~~~~~~~~l~-------~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 944 (1093)
|+..+++. .+. .....|.++...++|++.+... .| |..||..+++... .....+-.. ..|.++.
T Consensus 522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~~---~~~~~gl~~--~~i~~i~ 592 (795)
T 4a2l_A 522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIKR---YNTTNGLPN--NVVYGIL 592 (795)
T ss_dssp EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEEE---ECGGGTCSC--SCEEEEE
T ss_pred EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEEE---eCCCCCCch--hheEEEE
Confidence 99887665 221 2345799999999998776544 34 8889987754322 222222211 3588899
Q ss_pred EccCCCEEEEEeCCeEEEEEcCCcceeeeeecCC---CCCE--EEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001352 945 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPI--SQATFSCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus 945 ~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v--~~~~fs~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
..++|.+.+++ ++.|..|+..+++.. .+.... ...+ .++...+||.+++ |+.+| +..++..
T Consensus 593 ~d~~g~lWi~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p~ 658 (795)
T 4a2l_A 593 EDSFGRLWLST-NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRPE 658 (795)
T ss_dssp ECTTSCEEEEE-TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECGG
T ss_pred ECCCCCEEEEc-CCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEE-ecCCc-eEEEcHH
Confidence 99999877766 567888998776543 222111 2222 4677788997666 56677 4555543
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.64 E-value=1.4e-13 Score=147.95 Aligned_cols=246 Identities=12% Similarity=0.092 Sum_probs=177.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEe---ccccccEEEEEee-CCCCcEEEEEEc-CCCcEE
Q 001352 395 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFS-APCKQISVITCG-DDKTIK 469 (1093)
Q Consensus 395 ~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~---~~h~~~v~~~~~s-~d~~~l~l~s~~-~d~~i~ 469 (1093)
++-..+.+++++++|+++++...++.|.+||.. ++.+...... .+|...+..++++ +++. ++++.. .++.|+
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 455779999999999988888889999999987 4433311100 1345678999995 6665 555553 388999
Q ss_pred EEECCCCceeEEeec-CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec--CCCCceEEEEEccCCCEEE
Q 001352 470 VWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLF 546 (1093)
Q Consensus 470 vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~ 546 (1093)
+|| .+++.+..+.. +...+..+++.+ ++.++++...++.|.+||.. +.....+. .....+..++++++|+.++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 999 77887777643 345678888854 66777877788999999964 33344443 3334688999999999776
Q ss_pred EEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceEEEEecCCCCCC
Q 001352 547 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-VIKIWDMNKVQLLTTIDAGGGLPE 625 (1093)
Q Consensus 547 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~ 625 (1093)
+... ++.|++||. +++.+..+.... +...+..++++++|+.+++...++ .|.+||. +++.+..+..+.....
T Consensus 180 ~~~~----~~~i~~~~~-~g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 252 (286)
T 1q7f_A 180 SDNR----AHCVKVFNY-EGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ 252 (286)
T ss_dssp EEGG----GTEEEEEET-TCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC
T ss_pred EECC----CCEEEEEcC-CCCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCc
Confidence 6543 567999997 455555554321 124688999999998888877775 9999995 5667777665443334
Q ss_pred CceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 626 NPRICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 626 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
+..++++|+|+++++ +.++.|++|+....
T Consensus 253 ~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 253 CFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 668999999986666 67999999998654
No 182
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=1.3e-13 Score=152.07 Aligned_cols=274 Identities=10% Similarity=0.030 Sum_probs=188.3
Q ss_pred CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352 336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~ 415 (1093)
..|.+++|+|++.. ++..+.++.++.| .++.... +.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTI---TAEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEE---ECEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCccc---ccceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence 36889999999985 6666778899999 2333222 44566778999999999988888
Q ss_pred EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC----CcEEEEECCCCceeEEee--cCCCCe
Q 001352 416 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPV 489 (1093)
Q Consensus 416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~~--~h~~~v 489 (1093)
..++.|.+||..+++... ....+...+.+++|+++|+ ++++...+ +.|.+||..+++....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 888999999998875332 1224667899999999998 66666655 689999988887654443 244568
Q ss_pred EEeeecccCCccEEEEEec------CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001352 490 YSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 563 (1093)
Q Consensus 490 ~~~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 563 (1093)
..+++.+ ++.++++... .+.|..++........ +......+..++|+|+|+.++.+.. .++.|.+||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8888854 5666666543 2455555554433322 2222335788999999997766542 1456999998
Q ss_pred CC-Ceeeeeee-----cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCC----CCCCceEEEec
Q 001352 564 SE-GAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNK 633 (1093)
Q Consensus 564 ~~-~~~~~~~~-----~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~ 633 (1093)
.+ +.....+. ... ....+..++++++++.+++...++.|.+||. +++.+..+..... ...+.+++|+|
T Consensus 212 ~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp CTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred cCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC
Confidence 64 33322211 111 0135788999999988888778899999998 5666666654321 11478999999
Q ss_pred CCCEEEEEECCC
Q 001352 634 NGTLLAVIANEN 645 (1093)
Q Consensus 634 ~~~~l~~~~~dg 645 (1093)
+++.|++++.++
T Consensus 290 dg~~L~v~~~~g 301 (333)
T 2dg1_A 290 GTNQLIICSNDI 301 (333)
T ss_dssp TSCEEEEEEECG
T ss_pred CCCEEEEEeCcc
Confidence 987777766653
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=2.1e-13 Score=166.80 Aligned_cols=250 Identities=10% Similarity=0.001 Sum_probs=174.9
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcCC-----EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCc--
Q 001352 395 DPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-- 467 (1093)
Q Consensus 395 ~h~~~V~~v~~s~dg~~las~~~d~-----~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~-- 467 (1093)
+|...+..++|||||++||.++.++ .|++||+.+++.... .+. ...+..++|+|||+ .|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~--~~~~~~~~wspDg~--~l~~~~~~~~~~ 195 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGK--GMFYNAYPQQDG 195 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc--CcccceEEEEeCCC--EEEEEEECCccc
Confidence 4555789999999999999886543 899999999875432 222 22367899999999 5666666655
Q ss_pred --------------EEEEECCCCcee--EEee--cCCCCeEEeeecccCCccEEEEEec-----CCeEEEEEcCC-----
Q 001352 468 --------------IKVWDAVTGSRT--YSFE--GHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS----- 519 (1093)
Q Consensus 468 --------------i~vwd~~~~~~~--~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~----- 519 (1093)
|++|++.+++.. ..+. .|...+..+.| ++||++|+..+. +..|.+||+.+
T Consensus 196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 273 (710)
T 2xdw_A 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI 273 (710)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence 999999988632 2222 24555677777 557788887765 56899999986
Q ss_pred -CC-ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--eeeeecccccCCCeEEEEEcCCCCEEE
Q 001352 520 -LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQIL 595 (1093)
Q Consensus 520 -~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~ 595 (1093)
+. ....+..+...+.. .|+|+|+.|+..+........|.+||+.++.. .+.+..+. ....+..+.|++++..++
T Consensus 274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence 32 34444444444443 58899999888775443466899999988742 34444443 013577889987777777
Q ss_pred EEeCCCc--EEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEEcCCCc
Q 001352 596 AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 656 (1093)
Q Consensus 596 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 656 (1093)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.... .+++..||+.+++
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7888874 566787778877777655 334677889999877665432 4789999998765
No 184
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=2.7e-09 Score=131.81 Aligned_cols=588 Identities=12% Similarity=0.100 Sum_probs=337.7
Q ss_pred CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352 336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~ 415 (1093)
..|.++.-.++|. |-.|+.+| +..||-.+ .. .+... .. .... ..-....|.++...++|..|-+|
T Consensus 19 n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~---f~-----~~~~~-~~-~~~~--~~l~~n~I~~i~~d~~g~~lWig 83 (781)
T 3v9f_A 19 NYVLSITQDKQGF--LWFATEEG-LNKFDGTR---FI-----TYYKE-EQ-SSSV--QSITGNELNEVYTDPVQPVIWIA 83 (781)
T ss_dssp SBEEEEEECTTSC--EEEEESSC-EEEECSSS---EE-----EECCC-SS-CSSS--CCCSCSCEEEEEECSSSSEEEEE
T ss_pred CEeEEEEECCCCC--EEEccCCc-CccccCCc---eE-----EEEcC-CC-CCcc--ccccccccceEEEcCCCCEEEEE
Confidence 3899999999996 44455655 66677432 11 11100 00 0000 00023569999999888845567
Q ss_pred EcCCEEEEEEccCCCcccceEEec-----c---ccccEEEEEeeC--CCCcEEEEEEcCCCcEEEEECCCCceeEEeec-
Q 001352 416 YSKHIVQLYAYHGGSDARQQLEID-----A---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG- 484 (1093)
Q Consensus 416 ~~d~~i~iwd~~~~~~~~~~~~~~-----~---h~~~v~~~~~s~--d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~- 484 (1093)
+.++-+..||..+++.. .+. . ....|.++.... ++. +..++.++.|..+|..+++... +..
T Consensus 84 t~~~Gl~~~d~~~~~f~----~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~-~~~~ 155 (781)
T 3v9f_A 84 TQRAGLNAYNYETQSFS----VYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTH-YNKS 155 (781)
T ss_dssp ESSSCEEEEETTTTEEE----EECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEE-ESTT
T ss_pred eCCCCcceECCCCCeEE----eeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEe-eccC
Confidence 77734999998875421 121 0 123688888877 665 4445544558899987766433 221
Q ss_pred -----CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-------CCCCceEEEEEccCCCEEEEEecCC
Q 001352 485 -----HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 485 -----h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
....|.++... .++ .|..++.++-+..||..+........ .....|.++...++|.+.+...
T Consensus 156 ~~~~l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~--- 229 (781)
T 3v9f_A 156 TVPALPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS--- 229 (781)
T ss_dssp TCTTCSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET---
T ss_pred cccCCCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC---
Confidence 12446766553 233 45556766568888876654322111 1235688999888888776542
Q ss_pred CCceeEEEEeCCCCeeeeeeecc----cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe-------cC-
Q 001352 553 EGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-------AG- 620 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~- 620 (1093)
. -+.+||..+++........ ......|.++...++|. +..|+..+.|.++|..++....... ..
T Consensus 230 --~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~ 305 (781)
T 3v9f_A 230 --K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGD 305 (781)
T ss_dssp --T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCS
T ss_pred --C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCC
Confidence 2 3899998877654322211 11235689998887764 5666765678999988765432221 10
Q ss_pred ----CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCC
Q 001352 621 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 696 (1093)
Q Consensus 621 ----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s 696 (1093)
-....|.++...++|. |-+|+.++-|..++........ ... .
T Consensus 306 ~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~----------~---------------------- 351 (781)
T 3v9f_A 306 NNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY----------S---------------------- 351 (781)
T ss_dssp STTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----------------------------------
T ss_pred CCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc----------C----------------------
Confidence 0123467788888776 5566666677777765432111 000 0
Q ss_pred CCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccc
Q 001352 697 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 776 (1093)
Q Consensus 697 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~ 776 (1093)
+.. ..+.......|.++...++|. +..++.++.+..|+......
T Consensus 352 ~~~----------------------------~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~------- 395 (781)
T 3v9f_A 352 PTQ----------------------------MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA------- 395 (781)
T ss_dssp --C----------------------------CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE-------
T ss_pred ccc----------------------------cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE-------
Confidence 000 000000234578888888887 45555555566665432111
Q ss_pred cccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEEC--CCCCCeEEEEEcC
Q 001352 777 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNP 854 (1093)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~ 854 (1093)
..+.... ......|.+++..++|.+.+...++.+..++..+++...... .....|.++...+
T Consensus 396 -----~~~~~~~-----------~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 459 (781)
T 3v9f_A 396 -----IYNKENR-----------ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK 459 (781)
T ss_dssp -----ECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT
T ss_pred -----EEccCCC-----------CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC
Confidence 0010000 014567899999888887775556778899987775433221 2346789999887
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCcceeeecccc-----cCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeec
Q 001352 855 HDNNVIAIGMDDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT 929 (1093)
Q Consensus 855 ~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h-----~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 929 (1093)
++.+.+ |+. +-|..||..+++........ ...|.++...++|++.+.....| |..||..+++... +..
T Consensus 460 -~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~ 532 (781)
T 3v9f_A 460 -NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQ 532 (781)
T ss_dssp -TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECT
T ss_pred -CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccC
Confidence 665544 555 55889998876543322111 46799999999988776544355 7889887754322 221
Q ss_pred CCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCC---CCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001352 930 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPISQATFSCDCRMVFTSFVDGTLSIH 1006 (1093)
Q Consensus 930 ~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v~~~~fs~dg~~l~t~~~dg~v~vw 1006 (1093)
..+- ....|.++...++|.+.+++.+|-+..||..+++... +...+ ...|.++...++|.+.++ +..| |..+
T Consensus 533 ~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~ 607 (781)
T 3v9f_A 533 YEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCY 607 (781)
T ss_dssp TTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEE
T ss_pred CCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEE
Confidence 1111 1246889999999998777664444889887765332 11111 346788999999987664 4555 7788
Q ss_pred EcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352 1007 EASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 1007 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
+..++... .+....-++.. ....-++..++ +| .|..|+.+| +..++..
T Consensus 608 ~~~~~~~~-~~~~~dGl~~~----~f~~~~~~~~~-~G-~l~~g~~~G-l~~f~p~ 655 (781)
T 3v9f_A 608 ITSKKCFY-TYDHSNNIPQG----SFISGCVTKDH-NG-LIYFGSING-LCFFNPD 655 (781)
T ss_dssp ETTTTEEE-EECGGGTCCSS----CEEEEEEEECT-TS-CEEEEETTE-EEEECSC
T ss_pred ECCCCceE-EecccCCcccc----ccccCceEECC-CC-EEEEECCCc-eEEEChh
Confidence 88876543 34322222222 22223455665 34 466677777 5556643
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=1.3e-13 Score=168.75 Aligned_cols=250 Identities=10% Similarity=-0.008 Sum_probs=173.1
Q ss_pred cCCCCceeeeecCCCceEEEEEccCC----cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
+|+..+..++|||||++|+.+.+.+| .|++||+.+|+.+.. . + +...+..++||||
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspD 181 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHD 181 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTT
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeC
Confidence 35557889999999997444444333 899999999987642 0 1 1123667999999
Q ss_pred CCEEEEEEcCCE----------------EEEEEccCCCcccce-EEeccccccEEEEEeeCCCCcEEEEEEcC-----CC
Q 001352 409 GSLLGVAYSKHI----------------VQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGD-----DK 466 (1093)
Q Consensus 409 g~~las~~~d~~----------------i~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-----d~ 466 (1093)
|+.|+.++.++. |++|++.++...... .....|...+..++|||||+. |+.++. +.
T Consensus 182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~ 259 (710)
T 2xdw_A 182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVN 259 (710)
T ss_dssp SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCC
T ss_pred CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCcc
Confidence 999999987765 999999887532111 112235666889999999995 444432 56
Q ss_pred cEEEEECCC------Cc-eeEEeecCCCCeEEeeecccCCccEEEEEecC----CeEEEEEcCCCCc--eEEecCCC--C
Q 001352 467 TIKVWDAVT------GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPG--L 531 (1093)
Q Consensus 467 ~i~vwd~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~--~~~~~~~~--~ 531 (1093)
.|.+||+.+ +. ....+..+...+... |++ +|..|+..+.. +.|.+||+.+... ...+..+. .
T Consensus 260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD 336 (710)
T ss_dssp EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred EEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence 899999987 53 466676676666553 443 45555555443 3699999987642 23333333 3
Q ss_pred ceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe----CCCcEEEEE
Q 001352 532 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWD 607 (1093)
Q Consensus 532 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----~dg~i~iwd 607 (1093)
.+..++|++++.++++... ++...|++|++.+|+.++.+..+. ..+..+.++|+++.++... ..++++.||
T Consensus 337 ~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 337 VLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp EEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred eEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 6778899877777766654 335678899987887777776654 6788899999987776432 457899999
Q ss_pred CCCCc
Q 001352 608 MNKVQ 612 (1093)
Q Consensus 608 ~~~~~ 612 (1093)
+.+++
T Consensus 412 ~~tg~ 416 (710)
T 2xdw_A 412 LTKEE 416 (710)
T ss_dssp TTSSS
T ss_pred CCCCc
Confidence 99887
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.60 E-value=3.9e-13 Score=149.17 Aligned_cols=285 Identities=11% Similarity=0.039 Sum_probs=175.6
Q ss_pred CeEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC---C--e
Q 001352 581 SVSVVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE---N--R 646 (1093)
Q Consensus 581 ~v~~v~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---g--~ 646 (1093)
.+....+ +|++++... .++.|++||+.+++.... ..+..++|+|||++|+..+.+ + .
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 4556666 788776642 256799999998875433 236889999999999987753 2 3
Q ss_pred EEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccc
Q 001352 647 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 726 (1093)
Q Consensus 647 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~ 726 (1093)
|.+|++.+++......
T Consensus 87 l~~~~~~~g~~~~l~~---------------------------------------------------------------- 102 (347)
T 2gop_A 87 IWVADLETLSSKKILE---------------------------------------------------------------- 102 (347)
T ss_dssp EEEEETTTTEEEEEEE----------------------------------------------------------------
T ss_pred EEEEECCCCceEEEEc----------------------------------------------------------------
Confidence 6666666542221110
Q ss_pred cccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCe
Q 001352 727 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 806 (1093)
Q Consensus 727 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 806 (1093)
... +..++|+|+|+.|+.++.+.. .. . ....+
T Consensus 103 -------~~~-~~~~~wspdg~~l~~~~~~~~-------~~---------------------~------------~~~~~ 134 (347)
T 2gop_A 103 -------AKN-IRSLEWNEDSRKLLIVGFKRR-------ED---------------------E------------DFIFE 134 (347)
T ss_dssp -------ESE-EEEEEECTTSSEEEEEEECCC-------C----------------------------------------
T ss_pred -------CCC-ccceeECCCCCEEEEEEccCC-------Cc---------------------C------------CcEEE
Confidence 112 677889999988887765410 00 0 00011
Q ss_pred eEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC-------eEEEEEcCCcce
Q 001352 807 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-------TILIYNARSSEV 879 (1093)
Q Consensus 807 ~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-------~i~iwd~~~~~~ 879 (1093)
..+.|..+|.-+.......|.+||+.+++.+..+.. . .+..++|+| |+ +++++..++ ...||.+.+++.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCce
Confidence 122233344333222346799999998887455544 3 788999999 78 777776542 344554445543
Q ss_pred eeecccccCCeEEEEEeCCCCEEEEEeCCC--------cEEEEeCCCCceeeeeeeecCCCcccCCCCceE-EEEccCCC
Q 001352 880 ISKLEGHSKRVTGLVFSDALNILVSSGGDA--------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQT 950 (1093)
Q Consensus 880 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~dg~ 950 (1093)
..+..+ ..+..+ ||||++|+.++.++ .|.+|| +++ ......++.. .+.. ++|+ ||
T Consensus 211 -~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-----~~~l~~~~~~---~~~~~~~~s-dg- 274 (347)
T 2gop_A 211 -EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-----VMGILDEVDR---GVGQAKIKD-GK- 274 (347)
T ss_dssp -EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-----EEESSTTCCS---EEEEEEEET-TE-
T ss_pred -EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCc-----eEeccccCCc---ccCCccEEc-Cc-
Confidence 444445 555554 99999998877543 577787 433 1222223222 4665 8999 88
Q ss_pred EEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcE-EEEEcCCCc
Q 001352 951 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEASNLE 1012 (1093)
Q Consensus 951 ~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v-~vwd~~~~~ 1012 (1093)
++++ ..++.++|| +.+++.. .+. .+...|.+++|+| .++++++.++.. .+|.++ ++
T Consensus 275 ~~~~~~~~~~~~l~-~~~g~~~-~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 275 VYFTLFEEGSVNLY-IWDGEIK-PIA-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EEEEEEETTEEEEE-EESSSEE-EEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred EEEEEecCCcEEEE-EcCCceE-EEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 6666 577899999 8766553 333 3477899999999 678888877765 888887 54
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=3.1e-13 Score=145.98 Aligned_cols=244 Identities=11% Similarity=0.047 Sum_probs=174.1
Q ss_pred hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352 331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 410 (1093)
Q Consensus 331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~ 410 (1093)
+..+.....+++|+|+|+.+++++..++.|..||..++ ... +..+...+.+++++|+|+
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg~ 81 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQGH 81 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTCC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCCc
Confidence 44455678899999999877889999999999999887 322 334667899999999999
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEecc-ccccEEEEEeeCCCCcEEEEE----Ec-------------CCCcEEEEE
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVIT----CG-------------DDKTIKVWD 472 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s----~~-------------~d~~i~vwd 472 (1093)
++++...++.|.+||..+++.........+ ....+..++++|+|+ ++++ |+ ..+.|..++
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEEC
Confidence 888877778999999988764321111111 123567899999998 6776 32 134555566
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC-CCCc---eEEecCCCCceEEEEEccCCCEEEEE
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANGRRLFSC 548 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~---~~~~~~~~~~v~~~~~s~d~~~l~~~ 548 (1093)
.. ++ +..+..+......++|+ +++..+++.+.++.|.+|++. .+.. ...+......+..++++++|++.++.
T Consensus 160 ~~-g~-~~~~~~~~~~~~gi~~s--~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 160 PD-GT-LSAPIRDRVKPNGLAFL--PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA 235 (296)
T ss_dssp TT-SC-EEEEECCCSSEEEEEEC--TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE
T ss_pred CC-CC-EEEeecCCCCCccEEEC--CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc
Confidence 44 44 44455566677888885 466677777888999999997 3332 22333344456789999999977665
Q ss_pred ecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCce
Q 001352 549 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL 613 (1093)
Q Consensus 549 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 613 (1093)
.+.|.+||.. ++.+..+..+. . +.+++| +|+++.|++++.+ .+..++..+.++
T Consensus 236 ------~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ------GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ------TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ------CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 2349999986 77777777665 4 888999 6888989988875 466667766554
No 188
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.58 E-value=4.1e-13 Score=145.56 Aligned_cols=291 Identities=14% Similarity=0.120 Sum_probs=196.7
Q ss_pred CceeeeecCCCceEEEEEcc----CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 412 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l 412 (1093)
........||+++++++-.. ++.|.+.|..+++.+.... ....+ . +++||||++|
T Consensus 34 ~~~~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~-------------------vG~~P-~-va~spDG~~l 92 (386)
T 3sjl_D 34 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-------------------GGFLP-N-PVVADDGSFI 92 (386)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-------------------ECSSC-E-EEECTTSSCE
T ss_pred cceeeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE-------------------CCCCC-c-EEECCCCCEE
Confidence 33456778999986666554 6899999999999886522 12233 4 9999999999
Q ss_pred EEEE----------cCCEEEEEEccCCCcccceEEecc-----ccccEEEEEeeCCCCcEEEEEEc--CCCcEEEEECCC
Q 001352 413 GVAY----------SKHIVQLYAYHGGSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVT 475 (1093)
Q Consensus 413 as~~----------~d~~i~iwd~~~~~~~~~~~~~~~-----h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~ 475 (1093)
+++. .++.|.+||..+++.+..+. +.. ....-..++|+|||++ ++.+. .++.|.++|+.+
T Consensus 93 yVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-v~~g~r~~~g~~P~~~a~spDGk~--lyVan~~~~~~VsVID~~t 169 (386)
T 3sjl_D 93 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTPDGKT--LLFYQFSPAPAVGVVDLEG 169 (386)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECTTSSE--EEEEECSSSCEEEEEETTT
T ss_pred EEEcccccccccCCCCCEEEEEECCCCeEEEEEE-CCCccccccCCCCceEEEcCCCCE--EEEEEcCCCCeEEEEECCC
Confidence 8875 35789999999987665432 211 0123457899999995 44443 478999999999
Q ss_pred CceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC-CCceEEecCC----CCce-EEEEEc-cCCCEEEEE
Q 001352 476 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAP----GLGC-TRMAYS-ANGRRLFSC 548 (1093)
Q Consensus 476 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~----~~~v-~~~~~s-~d~~~l~~~ 548 (1093)
++.+.++..... . .+.|. ....+++.+.||.+.+.++.. ++........ ...+ ....|. ++|++++..
T Consensus 170 ~~vv~tI~v~g~--~--~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs 244 (386)
T 3sjl_D 170 KAFKRMLDVPDC--Y--HIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPT 244 (386)
T ss_dssp TEEEEEEECCSE--E--EEEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEB
T ss_pred CcEEEEEECCCc--c--eeecC-CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEe
Confidence 999998853221 1 11222 234677888899999998876 3332211111 1122 124554 678666543
Q ss_pred ecCCCCceeEEEEeCCCCe--eeeeeecc-------cccCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECC
Q 001352 549 GTSKEGESFLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMN 609 (1093)
Q Consensus 549 ~~~~~~~~~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~v~~~~~~~~l~~~~~----------dg~i~iwd~~ 609 (1093)
. .+.|++.|..++. ....+.-. .........++++++++.++.... .+.|.+.|+.
T Consensus 245 ~-----~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~ 319 (386)
T 3sjl_D 245 Y-----TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK 319 (386)
T ss_dssp T-----TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred C-----CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC
Confidence 3 4569999987654 33333200 000123345777999999888643 2579999999
Q ss_pred CCceEEEEecCCCCCCCceEEEecCCC-EEEEEE-CCCeEEEEEcCCCceeeecccc
Q 001352 610 KVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAAGVL 664 (1093)
Q Consensus 610 ~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 664 (1093)
+++.+..+.... .+..+++++|++ +|++.. .++.|.++|..+++.+..+...
T Consensus 320 t~kv~~~i~vg~---~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 320 TGERLAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp TCCEEEEEEEEE---EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred CCeEEEEEECCC---CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 999999988653 368999999997 666654 4899999999999888777643
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=2.6e-13 Score=165.52 Aligned_cols=290 Identities=12% Similarity=0.008 Sum_probs=183.3
Q ss_pred eeeecCCCceEEEEEccCC--cEEEEe--cCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352 340 SMDFHPVQHTLLLVGTNVG--DTGLWD--VNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 340 ~~~~spdg~~llasg~~dg--~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~ 415 (1093)
.-..+|||++++.+....+ .-.||- ..+++.... .|.+ ....+|...+..++|||||++||.+
T Consensus 72 ~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l-----~d~~--------~~a~~~~~~~~~~~~SPDG~~la~~ 138 (695)
T 2bkl_A 72 VSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVL-----LDPN--------GWSKDGTVSLGTWAVSWDGKKVAFA 138 (695)
T ss_dssp ECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEE-----ECGG--------GSSSSSCEEEEEEEECTTSSEEEEE
T ss_pred CCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEE-----EchH--------HhccCCCEEEEEEEECCCCCEEEEE
Confidence 3344599997555544333 344454 444432211 1110 0123566689999999999999954
Q ss_pred -----EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCc-------------EEEEECCCCc
Q 001352 416 -----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-------------IKVWDAVTGS 477 (1093)
Q Consensus 416 -----~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~-------------i~vwd~~~~~ 477 (1093)
+.+.+|++||+.+++.+... .+... ....++|+|||+ .|+.++.|.. |++|++.++.
T Consensus 139 ~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~--~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~ 213 (695)
T 2bkl_A 139 QKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSK--GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEP 213 (695)
T ss_dssp EEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSS--EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCG
T ss_pred ECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCC--EEEEEEecCCCCCccccCCCCCEEEEEECCCCc
Confidence 33468999999998754110 12111 126799999999 6777777665 9999999886
Q ss_pred ----eeEEeecCCCCeEEeeecccCCccEEEEEecCC----eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001352 478 ----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 549 (1093)
Q Consensus 478 ----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 549 (1093)
++.....|...+..+.| ++||++|+.++.++ .|.+|+..++. ...+..+...+....+ ++|. ++..+
T Consensus 214 ~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s 288 (695)
T 2bkl_A 214 SKDTVVHERTGDPTTFLQSDL--SRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLT 288 (695)
T ss_dssp GGCEEEECCCCCTTCEEEEEE--CTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEE
T ss_pred hhceEEEecCCCCEEEEEEEE--CCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEE
Confidence 33333345567778877 45677887777665 56666554443 3333334444555555 6777 65555
Q ss_pred cCCCCceeEEEEeCCCCee---eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceEEEEecCCCCCC
Q 001352 550 TSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPE 625 (1093)
Q Consensus 550 ~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~ 625 (1093)
.....+..|++||+.++.. ...+..+. ...+..++++ ++..+++...|+..++|.+. +++....+..+. ...
T Consensus 289 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~ 364 (695)
T 2bkl_A 289 DEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG-VGA 364 (695)
T ss_dssp CTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSS-SSE
T ss_pred CCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC-CeE
Confidence 4333467899999988753 33333321 2457788888 56677778889988888655 455555554432 234
Q ss_pred CceEEEecCCCEEEEEEC----CCeEEEEEcCCCc
Q 001352 626 NPRICFNKNGTLLAVIAN----ENRIKILETPESN 656 (1093)
Q Consensus 626 v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 656 (1093)
+..++++|++..++.... .++|++||+.+++
T Consensus 365 v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 365 ASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp ECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 667888999987775443 4789999998765
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=7.3e-13 Score=144.92 Aligned_cols=277 Identities=10% Similarity=-0.016 Sum_probs=190.1
Q ss_pred CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceE
Q 001352 357 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 436 (1093)
Q Consensus 357 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~ 436 (1093)
+++|.+||.++++........ . . -.........+++. +++..++...++.|.+||..+++.+.
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~---~----n------~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~--- 78 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYR---A----N------GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG--- 78 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHH---H----H------SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE---
T ss_pred CceEEEEECCCCEEhhhhHhh---h----c------CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE---
Confidence 789999999999865421000 0 0 00122446777774 45555556667899999999987655
Q ss_pred EeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC-----CCeEEeeecccCCccEEEEEe-cCC
Q 001352 437 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VDG 510 (1093)
Q Consensus 437 ~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~~-~dg 510 (1093)
++. .......++++++++ ++++...++.|.+||..+++....+.... .....+++ . ++.++++.. .++
T Consensus 79 ~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~~ 152 (328)
T 3dsm_A 79 RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQN 152 (328)
T ss_dssp EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTCC
T ss_pred EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCCC
Confidence 333 345688999999985 56666578999999999999887776433 13455665 2 334444443 489
Q ss_pred eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCC------ceeEEEEeCCCCeeeeeeecccccCCCeEE
Q 001352 511 KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVSV 584 (1093)
Q Consensus 511 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 584 (1093)
.|.++|+.+.+....+... .....++++|+|++++++...... .+.|.++|..+++....+.... ......
T Consensus 153 ~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~ 229 (328)
T 3dsm_A 153 RILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSE 229 (328)
T ss_dssp EEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEE
T ss_pred EEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCcee
Confidence 9999999988776666543 345678999999977766432100 2679999999998877765432 236889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEec-CCCEEEEE----ECCCeEEEEEcCCCceee
Q 001352 585 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVI----ANENRIKILETPESNSVD 659 (1093)
Q Consensus 585 v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~----~~dg~i~iw~~~~~~~~~ 659 (1093)
++++|++++++++.. .|.+||..+++................++++| ++.++++. ..++.|.+|+.. ++.+.
T Consensus 230 la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~ 306 (328)
T 3dsm_A 230 VQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID 306 (328)
T ss_dssp EEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred EEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence 999999999888765 89999999887642111111123467899999 55555555 568999999998 76666
Q ss_pred ecc
Q 001352 660 AAG 662 (1093)
Q Consensus 660 ~~~ 662 (1093)
.+.
T Consensus 307 ~i~ 309 (328)
T 3dsm_A 307 EFY 309 (328)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 191
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.57 E-value=9.7e-12 Score=137.60 Aligned_cols=203 Identities=10% Similarity=0.012 Sum_probs=141.2
Q ss_pred eEEEEccCCCEEEEEe---CCeEEEEEccCceeEEE-ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee
Q 001352 807 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 882 (1093)
Q Consensus 807 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~ 882 (1093)
..++++|||++|+++. ++.|.++| .+++.+.. +.... ++.+.|.+.+.+++.+.||.+.+++. +++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 3678999999988875 36799999 99988877 65322 24555645567777888999999999 8876633
Q ss_pred cc-----cccCC-eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCC----cccCCCCceEEEEccCCCEE
Q 001352 883 LE-----GHSKR-VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG----VMTLAPSETHIQFHKDQTRF 952 (1093)
Q Consensus 883 l~-----~h~~~-V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~dg~~l 952 (1093)
.. ....+ .....+++++..++..+..+.+.+.|+.+........+..... ..........++++||++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 21 11122 2335677777665555678899999997653222112211110 00001224458899999988
Q ss_pred EEEe-----------CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceEEEe
Q 001352 953 LLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1017 (1093)
Q Consensus 953 ~~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~-~l~t~~-~dg~v~vwd~~~~~~~~~~ 1017 (1093)
.+.. ++.|.++|+.+++.+..+..+ ....+++|+|||+ +++++. .++.|.+||+.+++.++++
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 8742 257999999999998887544 3688999999999 777776 4899999999999999774
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.57 E-value=2.6e-12 Score=139.30 Aligned_cols=204 Identities=13% Similarity=0.073 Sum_probs=142.9
Q ss_pred eeEEEEccCCCEEEEEe---CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-cceee
Q 001352 806 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS 881 (1093)
Q Consensus 806 v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~-~~~~~ 881 (1093)
...++|+|||+++.++. ++.|.++|+.+++.+.++..... ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 34678999999888775 47899999999999998864321 233433 667777888899999999876 55432
Q ss_pred ecccc----cCCeE-EEEEe-CCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecC------CCcccCCCCceEEEEccCC
Q 001352 882 KLEGH----SKRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKDQ 949 (1093)
Q Consensus 882 ~l~~h----~~~V~-~l~~s-~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~dg 949 (1093)
....+ ..++. ...|. ++|+++. .+.+|.|.+.|+.++.......+... .+-.. +....+++++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~ 291 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRAL 291 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTT
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCC
Confidence 11111 12222 24664 6775554 56689999999987643222222211 11111 245568899999
Q ss_pred CEEEEEe-----------CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCC-EEEEE-eCCCcEEEEEcCCCceEEE
Q 001352 950 TRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCR 1016 (1093)
Q Consensus 950 ~~l~~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~-~l~t~-~~dg~v~vwd~~~~~~~~~ 1016 (1093)
+.+.+.. .+.|.+.|+.+++.+..+..++ ++.+++||+|++ +|+++ ..++.|.++|..+++.+.+
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 9988842 2479999999999999877654 688999999997 66664 4589999999999999988
Q ss_pred ec
Q 001352 1017 IL 1018 (1093)
Q Consensus 1017 ~~ 1018 (1093)
+.
T Consensus 370 i~ 371 (386)
T 3sjl_D 370 VN 371 (386)
T ss_dssp EC
T ss_pred ec
Confidence 86
No 193
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.57 E-value=1.5e-12 Score=137.64 Aligned_cols=245 Identities=12% Similarity=0.104 Sum_probs=179.2
Q ss_pred EEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCC-CCeEEEEECCCCCEEEEEEcCCEEEEEEccC
Q 001352 350 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 428 (1093)
Q Consensus 350 llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v~~s~dg~~las~~~d~~i~iwd~~~ 428 (1093)
+|++++.++.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 689999999999999999998865 22343 4788999999999998 35778999999 7
Q ss_pred CCcccceEEeccc-cccEEEEEeeCCCCcEEEEEEcC-CCcEEEEECCCCceeEEeecC------CCCeEEeeecccCCc
Q 001352 429 GSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENI 500 (1093)
Q Consensus 429 ~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s~~~-d~~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~ 500 (1093)
|+.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+.++... ......+++ .++|
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G 136 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG 136 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence 76555 34433 34788999999999 7777776 778888884 88888776421 122333333 5678
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccccc--
Q 001352 501 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-- 578 (1093)
Q Consensus 501 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-- 578 (1093)
.++++...++.|.+||.+ ++.+..+.... ...++.+.++|+.++++.. .+.|..+|..+|+.+..+......
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~ 210 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV 210 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred CEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence 899999999999999988 88888776653 4556788899999988764 457999999999998888754311
Q ss_pred -CCCeEEEEEcCCCCEEEEEeCC--------CcEEEEEC-CCCceEEEEecCCCCCCCceEE
Q 001352 579 -HNSVSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC 630 (1093)
Q Consensus 579 -~~~v~~v~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 630 (1093)
...+..+...++|+.+++.... +..+++.+ .+|+.+..+........+..++
T Consensus 211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 1237788889999888776421 23345555 4677777776655555555543
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=1.2e-11 Score=136.78 Aligned_cols=281 Identities=12% Similarity=0.011 Sum_probs=186.4
Q ss_pred eecCCCceEEEEEc-cCC---cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE-
Q 001352 342 DFHPVQHTLLLVGT-NVG---DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY- 416 (1093)
Q Consensus 342 ~~spdg~~llasg~-~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~- 416 (1093)
...|++++++++-. ... +|.++|..+++.+.. +.....+ .++|||||++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~ 85 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST 85 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence 45578876444432 233 889999999987654 2222233 899999999999885
Q ss_pred ---------cCCEEEEEEccCCCcccceEEec--cc---cccEEEEEeeCCCCcEEEEEEc--CCCcEEEEECCCCceeE
Q 001352 417 ---------SKHIVQLYAYHGGSDARQQLEID--AH---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTY 480 (1093)
Q Consensus 417 ---------~d~~i~iwd~~~~~~~~~~~~~~--~h---~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~ 480 (1093)
.++.|.+||..+.+.+..+. +. .+ ...-..++|+|||++ |+.+. .++.|.++| .+++.+.
T Consensus 86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~~--l~v~n~~~~~~v~viD-~t~~~~~ 161 (373)
T 2mad_H 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNAD--LLFFQFAAGPAVGLVV-QGGSSDD 161 (373)
T ss_pred cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCCE--EEEEecCCCCeEEEEE-CCCCEEe
Confidence 36789999999876554321 11 00 123457899999994 55544 357899999 9999888
Q ss_pred E-eecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEec-----CCCCc-eEEEEEccCCCEEEEEecCCC
Q 001352 481 S-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKE 553 (1093)
Q Consensus 481 ~-~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~-v~~~~~s~d~~~l~~~~~~~~ 553 (1093)
+ +... .. +.+.+... ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+.
T Consensus 162 ~~i~~~-~~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 232 (373)
T 2mad_H 162 QLLSSP-TC---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--- 232 (373)
T ss_pred EEcCCC-ce---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence 7 6432 21 23333332 45677788999999999 665542221 11112 233456777665554443
Q ss_pred CceeEEEEeCCCCe--eeeeeeccc-------ccCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceE
Q 001352 554 GESFLVEWNESEGA--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLL 614 (1093)
Q Consensus 554 ~~~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~v~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~ 614 (1093)
.+.+.+.|..++. .+..+.... ........+.++|+++.++++.. .+.|.++|..+++.+
T Consensus 233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv 311 (373)
T 2mad_H 233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS 311 (373)
T ss_pred -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence 4468888987553 222221100 00122445789999998888653 357999999999999
Q ss_pred EEEecCCCCCCCceEEEecCCC-EEEEEE-CCCeEEEEEcCCCceeee
Q 001352 615 TTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDA 660 (1093)
Q Consensus 615 ~~~~~~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~ 660 (1093)
..+.... ....++|+|||+ +++++. .++.|.++|..+.+.+..
T Consensus 312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 9997653 368999999999 777776 489999999999887766
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.56 E-value=1.8e-11 Score=132.27 Aligned_cols=283 Identities=10% Similarity=0.053 Sum_probs=193.6
Q ss_pred cCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 412 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l 412 (1093)
.+...+.+++++|+|+ +.++...++.|.+||.. ++.... . ...+...+.+++++++|.+.
T Consensus 12 ~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l~ 71 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGEVW 71 (299)
T ss_dssp SSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSCEE
T ss_pred CcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCCEE
Confidence 3445899999999998 56665567899999988 553321 0 22345789999999999988
Q ss_pred EEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE-eecCCCCeEE
Q 001352 413 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYS 491 (1093)
Q Consensus 413 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~h~~~v~~ 491 (1093)
++...++.|..||.. ++ ... ..+......+..+++.++|. ++++...++.|.+||. +++.... ...+...+..
T Consensus 72 v~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~ 145 (299)
T 2z2n_A 72 FTENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSF 145 (299)
T ss_dssp EEETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred EeCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCce
Confidence 887778889999986 33 221 12223456789999999998 6777777889999998 6654432 2334456788
Q ss_pred eeecccCCccEEEEEecCCeEEEEEcCCCCceEE-ecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352 492 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 570 (1093)
Q Consensus 492 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 570 (1093)
+++. +++.+.++...++.|..||. +++.... .......+..++++++|+..++... .+.|..||. +++...
T Consensus 146 i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~ 217 (299)
T 2z2n_A 146 ITLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITE 217 (299)
T ss_dssp EEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEE
T ss_pred EEEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEE
Confidence 8874 45667777767889999998 4443322 3334456889999999986665432 456999998 666433
Q ss_pred eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001352 571 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 650 (1093)
Q Consensus 571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 650 (1093)
+.... ....+..++++++|+.+++...++.|.+||. +++ +..+........+.++++ ++|++.++.. .+.+..+
T Consensus 218 -~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~ 291 (299)
T 2z2n_A 218 -FKIPT-PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKL 291 (299)
T ss_dssp -EECSS-TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEE
T ss_pred -EECCC-CCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEE
Confidence 32211 1356889999999886666657889999998 454 334433333345788999 8887666554 5677777
Q ss_pred EcCCC
Q 001352 651 ETPES 655 (1093)
Q Consensus 651 ~~~~~ 655 (1093)
+..+.
T Consensus 292 ~~~~~ 296 (299)
T 2z2n_A 292 TLIKD 296 (299)
T ss_dssp EEC--
T ss_pred EcCcc
Confidence 76643
No 196
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=9.3e-13 Score=145.09 Aligned_cols=261 Identities=10% Similarity=0.053 Sum_probs=182.5
Q ss_pred CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352 398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 477 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 477 (1093)
..|.+++|++++..++..+.++.++.|. ++ ....+..+...+.+++|+++|+ +++++..++.|.+||..+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AE---PWLEISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CE---EEEEEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred cccceeeecCCccceeEEeecccCcccc---cc---eeEEEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence 4577889999988888777888889992 22 2224556777789999999998 77788889999999999888
Q ss_pred eeEEeecCCCCeEEeeecccCCccEEEEEecC----CeEEEEEcCCCCceEEec--CCCCceEEEEEccCCCEEEEEecC
Q 001352 478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTS 551 (1093)
Q Consensus 478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~~ 551 (1093)
.......+...+.+++++ +++.++++...+ +.|.+||.++......+. .....+..++++|+|+.+++....
T Consensus 78 ~~~~~~~~~~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 78 IKRPFVSHKANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp EEEEEECSSSSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred EEEEeeCCCCCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence 766554567789999885 456677777666 689999988776553332 234578899999999887765421
Q ss_pred --CCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCC-CceEEEE------ecCC
Q 001352 552 --KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK-VQLLTTI------DAGG 621 (1093)
Q Consensus 552 --~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~-~~~~~~~------~~~~ 621 (1093)
.+..+.|+.+|..+++....... . ..+..++|+|+++.++. .+.++.|++||..+ +..+..+ ....
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 231 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQN-I---SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG 231 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEEE-E---SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred cccCCCceEEEEeCCCCEEEEeecC-C---CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence 11245688888776655433322 2 45788999999986655 45678999999964 3332211 1111
Q ss_pred CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccc------cceeeeec
Q 001352 622 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD------NLRKLSVN 674 (1093)
Q Consensus 622 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~i~~~~~~ 674 (1093)
. ..+..++++++|+++++...++.|.+|+.. ++.+..+..+.. .+.+++++
T Consensus 232 ~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~ 288 (333)
T 2dg1_A 232 H-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFI 288 (333)
T ss_dssp S-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred C-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEEC
Confidence 1 246789999999988888888999999984 545544433322 35555554
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.55 E-value=1.2e-12 Score=143.11 Aligned_cols=272 Identities=8% Similarity=0.032 Sum_probs=184.0
Q ss_pred ccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCC
Q 001352 707 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 786 (1093)
Q Consensus 707 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1093)
.++++.++|..+.+....................+++. +++..++...++.+.+||..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~--------------------- 72 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN--------------------- 72 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT---------------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc---------------------
Confidence 36788888876543322111000011122345667774 45555555566888887644
Q ss_pred CCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE-eCCeEEEEEccCceeEEEECCCC-----CCeEEEEEcCCCCCEE
Q 001352 787 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVI 860 (1093)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~l 860 (1093)
+++.+.... .......++++++++.+++. .++.|.+||..+++....+.... .....+++ . +++++
T Consensus 73 -t~~~~~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly 144 (328)
T 3dsm_A 73 -TFKEVGRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY 144 (328)
T ss_dssp -TCCEEEEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred -ccEEEEEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence 333233321 23567889999999655555 37999999999999887776433 14556777 4 66666
Q ss_pred EEEe-CCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCC----------CcEEEEeCCCCceeeeeeeec
Q 001352 861 AIGM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQT 929 (1093)
Q Consensus 861 asg~-~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~~~ 929 (1093)
++.. .++.|.++|+.+++.+..+... .....++++|+|++++++..+ +.|.++|..+++... .+..
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~ 221 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF 221 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence 6554 4889999999999888777643 345789999999988877655 789999998876433 2222
Q ss_pred CCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeee-eecCCCCCEEEEEEcc-CCCEEEEE----eCCCcE
Q 001352 930 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-WFPISSVPISQATFSC-DCRMVFTS----FVDGTL 1003 (1093)
Q Consensus 930 ~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~-~~~~h~~~v~~~~fs~-dg~~l~t~----~~dg~v 1003 (1093)
..+ .....++|+||++.|.++.. .|.+||..+++.... +...+......++++| ++.++++. ..++.|
T Consensus 222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V 295 (328)
T 3dsm_A 222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV 295 (328)
T ss_dssp CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence 222 14789999999999988655 999999998876432 1222246789999999 55566665 568899
Q ss_pred EEEEcCCCceEEEec
Q 001352 1004 SIHEASNLEVQCRIL 1018 (1093)
Q Consensus 1004 ~vwd~~~~~~~~~~~ 1018 (1093)
.+||.. |+.+.++.
T Consensus 296 ~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 296 YRYSPQ-GKLIDEFY 309 (328)
T ss_dssp EEECTT-CCEEEEEE
T ss_pred EEECCC-CCEEEEEE
Confidence 999998 88888876
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=1.3e-12 Score=138.33 Aligned_cols=247 Identities=8% Similarity=-0.004 Sum_probs=177.0
Q ss_pred CCCEEEEEe-CCeEEEEEccCceeEEEECCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccc-cCCe
Q 001352 814 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRV 890 (1093)
Q Consensus 814 dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h-~~~V 890 (1093)
.+++|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| ++++++ +.++.|..||. +|+.+..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456777776 6999999999999999998766 5789999999 898888 45788999999 89999988865 3478
Q ss_pred EEEEEeCCCCEEEEEeC-CCcEEEEeCCCCceeeeeeeecC-CCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCC
Q 001352 891 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 967 (1093)
Q Consensus 891 ~~l~~s~dg~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~ 967 (1093)
.++.+.+||+++++.+. ++.|..+|.+ ++......+... .+... ....+++.++|+++++. .++.|..||..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~---~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHA---QFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGG---SCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccc---cccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 89999999999999887 7778777764 343222222111 11111 35567889999999985 67899999998
Q ss_pred cceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEE
Q 001352 968 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1047 (1093)
Q Consensus 968 ~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1047 (1093)
|+.+.++..+ ..+.++.+.++|.++++++.+++|..+|..+|+.+.++..... +.. .-..+..++..+ +++.+
T Consensus 155 G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~---~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 155 GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-EGV---QLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-BSC---CCSEEEEEEECT-TSCEE
T ss_pred CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-CCc---cccccccceEcC-CCCEE
Confidence 9888775532 3556778899999999988888999999999999988873221 111 112344566676 57777
Q ss_pred EEEeCC--------CcEEEEecC-CCCCCcccCCCccc
Q 001352 1048 AVGLTN--------GEVYVIEPN-EPGDTWAVLPPDEI 1076 (1093)
Q Consensus 1048 ~~~~~d--------g~v~~w~~~-~~~~~~~~~~~~~~ 1076 (1093)
++.... +..+++++. +.+..|......+.
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~ 265 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF 265 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTS
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccc
Confidence 776422 234566663 33344655444444
No 199
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.54 E-value=2.7e-12 Score=138.58 Aligned_cols=238 Identities=11% Similarity=0.056 Sum_probs=168.9
Q ss_pred ecCCCCCeEEEEECCCCC-EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 471 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw 471 (1093)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++++++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 344566788999999998 7778888899999999886 33 4556777899999999998 67777777899999
Q ss_pred ECCCCceeEEeecC----CCCeEEeeecccCCccEEEEEec-----------------CCeEEEEEcCCCCceEEecCCC
Q 001352 472 DAVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG 530 (1093)
Q Consensus 472 d~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~~~ 530 (1093)
|..+|+........ ...++.+++. ++|.++++.+. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 99888765443221 1245567774 46777776321 2345555443 4444444555
Q ss_pred CceEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCee---eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001352 531 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 606 (1093)
Q Consensus 531 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iw 606 (1093)
.....++|+|+|+.+++... .+.|++|++. ++.. ...+.. ....+..++++++|+.+++. ++.|.+|
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHFTV---EPGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEECC---SSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEeeC---CCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 66789999999999844432 5579999986 5554 333321 23566789999999866555 8899999
Q ss_pred ECCCCceEEEEecCCCCCCCceEEE-ecCCCEEEEEECCCeEEEEEcCCC
Q 001352 607 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 607 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
|.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus 243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 986 777777765533 789999 5899999998876 4555555544
No 200
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=1.4e-08 Score=125.50 Aligned_cols=537 Identities=11% Similarity=0.048 Sum_probs=310.9
Q ss_pred CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC--CCCEEE
Q 001352 336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLG 413 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~--dg~~la 413 (1093)
..|.++...++|.. |-.|+.++.+..||..+++.... ... .. .. ..-....|.++.... +|.+ .
T Consensus 66 n~I~~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~f~~~-~~~---~~------~~--~~l~~~~i~~i~~d~~~~g~l-w 131 (781)
T 3v9f_A 66 NELNEVYTDPVQPV-IWIATQRAGLNAYNYETQSFSVY-QYN---PE------DP--QSLITNDVTHITSSVQAGKGL-W 131 (781)
T ss_dssp SCEEEEEECSSSSE-EEEEESSSCEEEEETTTTEEEEE-CCC---TT------CS--SSCSCSCEEEEEECSSTTSEE-E
T ss_pred cccceEEEcCCCCE-EEEEeCCCCcceECCCCCeEEee-ccc---cC------CC--CCcccCcceEEEecCccCCCE-E
Confidence 37999999999972 33455665799999987654321 000 00 00 000124688998887 6654 4
Q ss_pred EEEcCCEEEEEEccCCCcccceEEecc------ccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEee----
Q 001352 414 VAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE---- 483 (1093)
Q Consensus 414 s~~~d~~i~iwd~~~~~~~~~~~~~~~------h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~---- 483 (1093)
.++.++.|..||..+++.. .+.. ....|.++...++|. +..+..++-+..||..+++...-..
T Consensus 132 i~t~~~gl~~~~~~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~ 204 (781)
T 3v9f_A 132 VCTYYRGIEYLDIATGKFT----HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQN 204 (781)
T ss_dssp EEESSSCEEEEETTTTEEE----EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC----
T ss_pred EEECCCCeeEEECCCCeEE----eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCC
Confidence 4553344889998765421 1211 134688888887776 4445556568899987775432211
Q ss_pred ---cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe-------cCCCCceEEEEEccCCCEEEEEecCCC
Q 001352 484 ---GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKE 553 (1093)
Q Consensus 484 ---~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~s~d~~~l~~~~~~~~ 553 (1093)
.....|.++.. +.++. |..++.+ -+.+||..+....... ......|.++...++|...+....
T Consensus 205 ~~~l~~~~i~~i~~--d~~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~--- 277 (781)
T 3v9f_A 205 PNSLPGNDVRCIYK--DTNGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATEL--- 277 (781)
T ss_dssp ----CCSSEEEEEE--CTTCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESS---
T ss_pred cccCCCCceeEEEE--cCCCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCC---
Confidence 01345777765 33444 4445555 6888887654332211 122456889998888876664421
Q ss_pred CceeEEEEeCCCCeeeeeee-----------cccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe----
Q 001352 554 GESFLVEWNESEGAIKRTYQ-----------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---- 618 (1093)
Q Consensus 554 ~~~~i~iwd~~~~~~~~~~~-----------~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---- 618 (1093)
+-|.++|..++....... ........|.++...++|. |..|+.++.|..++..++.......
T Consensus 278 --~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~ 354 (781)
T 3v9f_A 278 --NGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQ 354 (781)
T ss_dssp --SCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----C
T ss_pred --CCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccc
Confidence 228889987765432211 1112246789999988775 6667777779999987655433211
Q ss_pred ---cCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCC
Q 001352 619 ---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP 695 (1093)
Q Consensus 619 ---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1093)
..-....|.+++..++|. |.+|+.++-|..|+..+.... ....
T Consensus 355 ~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~-------------------------------- 400 (781)
T 3v9f_A 355 MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAI-YNKE-------------------------------- 400 (781)
T ss_dssp CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEE-CC----------------------------------
T ss_pred cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEE-EccC--------------------------------
Confidence 011123477777777776 455665666888876532111 0000
Q ss_pred CCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCccc
Q 001352 696 KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 775 (1093)
Q Consensus 696 s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~ 775 (1093)
+.......|.++...++|. |.+++.++.+..++.....
T Consensus 401 ----------------------------------~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~------- 438 (781)
T 3v9f_A 401 ----------------------------------NRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKK------- 438 (781)
T ss_dssp -------------------------------------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCE-------
T ss_pred ----------------------------------CCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCc-------
Confidence 0000234577788777777 4445554555555432211
Q ss_pred ccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCC-----CCCeEEE
Q 001352 776 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATSL 850 (1093)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l 850 (1093)
....... ......|.++...++|.+.+... +.+..+|..+++........ ...|.++
T Consensus 439 ----------------~~~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 500 (781)
T 3v9f_A 439 ----------------FQIIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSI 500 (781)
T ss_dssp ----------------EEECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEE
T ss_pred ----------------EEEeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEE
Confidence 1110000 01356788999988888766554 67999998876654433222 4578999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecc--c-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeee
Q 001352 851 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE--G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 927 (1093)
Q Consensus 851 ~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~--~-h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 927 (1093)
+..+ ++++.+ |+.++-+..||..+++...-.. + ....|.++...++|++.++.. +|.|..||..+++... .
T Consensus 501 ~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~---~ 574 (781)
T 3v9f_A 501 AQDS-EGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV---F 574 (781)
T ss_dssp EECT-TCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE---E
T ss_pred EEcC-CCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE---c
Confidence 9988 776655 5554448889887665432211 1 245789999988988776544 7754888887755322 2
Q ss_pred ecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCC---CC--CEEEEEEccCCCEEEEEeCCCc
Q 001352 928 QTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SV--PISQATFSCDCRMVFTSFVDGT 1002 (1093)
Q Consensus 928 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h---~~--~v~~~~fs~dg~~l~t~~~dg~ 1002 (1093)
....+-.. ..|.++...++|.+.+++.. .|..++..++... .+.... .. ...++...+||++++ |+.+|
T Consensus 575 ~~~~gl~~--~~i~~i~~d~~g~lW~~t~~-Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G- 648 (781)
T 3v9f_A 575 QRKEGLPN--THIRAISEDKNGNIWASTNT-GISCYITSKKCFY-TYDHSNNIPQGSFISGCVTKDHNGLIYF-GSING- 648 (781)
T ss_dssp CGGGTCSC--CCCCEEEECSSSCEEEECSS-CEEEEETTTTEEE-EECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE-
T ss_pred cccCCCCC--ceEEEEEECCCCCEEEEcCC-ceEEEECCCCceE-EecccCCccccccccCceEECCCCEEEE-ECCCc-
Confidence 22222111 35788999999987777644 4777887765432 221111 11 234677788998666 66677
Q ss_pred EEEEEcC
Q 001352 1003 LSIHEAS 1009 (1093)
Q Consensus 1003 v~vwd~~ 1009 (1093)
+..++..
T Consensus 649 l~~f~p~ 655 (781)
T 3v9f_A 649 LCFFNPD 655 (781)
T ss_dssp EEEECSC
T ss_pred eEEEChh
Confidence 5556654
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=4e-13 Score=163.80 Aligned_cols=250 Identities=9% Similarity=-0.077 Sum_probs=163.2
Q ss_pred cCCCCceeeeecCCCceEEEEEcc----CCcEEEEecCCCcee-EEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~----dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
+|+..+..++|||||++|+.+.+. +.+|++||+.+|+.+ .. . +.+. ....++|||
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wsp 177 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTP 177 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECT
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEec
Confidence 566679999999999975444333 357999999999865 11 0 1111 126799999
Q ss_pred CCCEEEEEEcCCE-------------EEEEEccCCCccc-ceEEeccccccEEEEEeeCCCCcEEEEEEcCCC----cEE
Q 001352 408 DGSLLGVAYSKHI-------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIK 469 (1093)
Q Consensus 408 dg~~las~~~d~~-------------i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~----~i~ 469 (1093)
||+.|+.++.+.. |++|++.++.... .......|...+..++|||||+. |+.++.++ .|.
T Consensus 178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~ 255 (695)
T 2bkl_A 178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVY 255 (695)
T ss_dssp TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEE
T ss_pred CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEE
Confidence 9999999988766 9999999875321 12122345668899999999995 44444444 677
Q ss_pred EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEe---cCCeEEEEEcCCCCc---eEEecCC-CCceEEEEEccCC
Q 001352 470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANG 542 (1093)
Q Consensus 470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~-~~~v~~~~~s~d~ 542 (1093)
+||..+++ ...+..+...+....+ + ++.+++... .++.|.+||+.+... ...+... ...+..++++ ++
T Consensus 256 ~~~~~~~~-~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~ 330 (695)
T 2bkl_A 256 WKRPGEKD-FRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG 330 (695)
T ss_dssp EECTTCSS-CEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred EEcCCCCc-eEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence 77765554 4445555555555554 2 344444444 258899999987653 3333333 4467888888 66
Q ss_pred CEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe----CCCcEEEEECCCCceE
Q 001352 543 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQLL 614 (1093)
Q Consensus 543 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~ 614 (1093)
..+++... ++...|.++++. ++..+.+..+. ...+..+.++|+++.++... ..++|++||+.+++..
T Consensus 331 ~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 331 HLSLEYLK--DATSEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp EEEEEEEE--TTEEEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEEE--CCEEEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 66666554 234456666654 54455554432 25677788899988777432 4578999999988743
No 202
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.50 E-value=2.4e-12 Score=136.88 Aligned_cols=241 Identities=8% Similarity=-0.046 Sum_probs=166.5
Q ss_pred CceeeeecCCCceEEE-EEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352 337 SPMSMDFHPVQHTLLL-VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 337 ~V~~~~~spdg~~lla-sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~ 415 (1093)
...+++++|+|+ +++ +...++.|.+||..++..... ...+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence 778999999998 566 546788999999766543211 11233567889999999966665
Q ss_pred EcCCEEEEEEccCCCcccceEEec-cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeee
Q 001352 416 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 494 (1093)
Q Consensus 416 ~~d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 494 (1093)
. ++.|.+||..++... .+. .....+..++++++|+ ++++...++.|.+|+..+.............+..+++
T Consensus 85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 889999998765422 222 2335689999999998 6777777889999986655443322233345677777
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeec
Q 001352 495 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 574 (1093)
Q Consensus 495 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 574 (1093)
.+ ++.++++...++.|.+||................+..++++++|..+++... .+.|.+|+..+.........
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECCCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeeccC
Confidence 54 5667777777899999998765544332333356889999999966665533 45699999876544332212
Q ss_pred ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001352 575 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 613 (1093)
Q Consensus 575 ~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 613 (1093)
. ...+.+++++++|+.+++...++.|++++....+.
T Consensus 232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 1 24688999999998888888899999999876543
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=2.4e-12 Score=158.04 Aligned_cols=247 Identities=10% Similarity=0.054 Sum_probs=163.1
Q ss_pred CCCCCeEEEEECCCCCEEEEEEcC-----CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC---
Q 001352 395 DPGVSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 466 (1093)
Q Consensus 395 ~h~~~V~~v~~s~dg~~las~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--- 466 (1093)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|| + .|+.++.|+
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 344578899999999999988654 4699999999875431 112222357899999 8 455555444
Q ss_pred -----------cEEEEECCCCce--eEEee--cCCCCeEEeeecccCCccEEEEEecCC-----eEEEEEcCCC--CceE
Q 001352 467 -----------TIKVWDAVTGSR--TYSFE--GHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARV 524 (1093)
Q Consensus 467 -----------~i~vwd~~~~~~--~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~--~~~~ 524 (1093)
.|++|++.++.. ...+. .+...+..+.| ++||++|+..+.++ .|.+||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 389999988763 22233 23335777777 56778888777654 7999999876 3133
Q ss_pred EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--eeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCc
Q 001352 525 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 602 (1093)
Q Consensus 525 ~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~ 602 (1093)
.+..+...+... ++|+|+.|+..+..+.....|++||+.++ .....+..+. ..+..+.++ ++..+++...|+.
T Consensus 311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~ 385 (741)
T 1yr2_A 311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAK 385 (741)
T ss_dssp EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTE
T ss_pred EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCE
Confidence 343333344444 35899999888765444678999999885 3333343333 456677777 4556677888888
Q ss_pred EEEEECC-CCceEEEEecCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEEcCCCc
Q 001352 603 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN 656 (1093)
Q Consensus 603 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iw~~~~~~ 656 (1093)
.+||.+. +++....+..+. ...+..++++|+++.++.... .+++++||+.+++
T Consensus 386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7777554 455566655432 234677889999886664432 4789999998764
No 204
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.49 E-value=1.1e-10 Score=126.12 Aligned_cols=242 Identities=11% Similarity=0.034 Sum_probs=170.8
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+..+...+.+++++++|++.++...++.|.+||.. ++ +.. .....+...+.++++.++|. ++++...++.|..||
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITE-YPLPTPDAKVMCLTISSDGE--VWFTENAANKIGRIT 84 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEE-ecCCcccCceeeEEECCCCC--EEEeCCCCCeEEEEC
Confidence 44466789999999999988776667899999988 54 221 12233456799999999998 677777788999999
Q ss_pred CCCCcee-EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEec
Q 001352 473 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGT 550 (1093)
Q Consensus 473 ~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~ 550 (1093)
.. ++.. ..+......+..+++. +++.++++...++.|.+||. ++.... ........+..++++++|+..++...
T Consensus 85 ~~-g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 85 KK-GIIKEYTLPNPDSAPYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred CC-CcEEEEeCCCcCCCceeeEEC--CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence 76 4432 2222345567888875 46677777777889999988 433322 23334457889999999987776532
Q ss_pred CCCCceeEEEEeCCCCeeeee-eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceE
Q 001352 551 SKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 629 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 629 (1093)
.+.|..||. +++.... .... ...+..+++++++..+++...++.|.+||. +++... +........+..+
T Consensus 161 ----~~~i~~~~~-~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i 230 (299)
T 2z2n_A 161 ----NNAIGRITE-SGDITEFKIPTP---ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAI 230 (299)
T ss_dssp ----TTEEEEECT-TCCEEEEECSST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEE
T ss_pred ----CCEEEEEcC-CCcEEEeeCCCC---CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeE
Confidence 456999998 6665432 1111 256889999999887666667889999999 666443 3333233457899
Q ss_pred EEecCCCEEEEEECCCeEEEEEcC
Q 001352 630 CFNKNGTLLAVIANENRIKILETP 653 (1093)
Q Consensus 630 ~~s~~~~~l~~~~~dg~i~iw~~~ 653 (1093)
+++++|+++++...++.|..|+..
T Consensus 231 ~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EECSTTCEEEEETTTTEEEEEETT
T ss_pred EECCCCCEEEeccCCceEEEECCC
Confidence 999999866666577899999983
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.49 E-value=1.1e-11 Score=137.10 Aligned_cols=206 Identities=14% Similarity=0.076 Sum_probs=143.7
Q ss_pred eEEEEccCCCEEEEEe---CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeee-
Q 001352 807 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK- 882 (1093)
Q Consensus 807 ~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~- 882 (1093)
..++|+|||+++.++. ++.|.+.|+.+++.+.++..... ....|++.+.+++.+.||.+.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 3568899999888875 37899999999999988874321 334442446666777888888888866655422
Q ss_pred ---cccccCCe-EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcc----cCCCCceEEEEccCCCEEEE
Q 001352 883 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRFLL 954 (1093)
Q Consensus 883 ---l~~h~~~V-~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~l~~ 954 (1093)
+.....++ ..+.|+++++.++..+..+.|.+.|+.+................ ........++++||++.+.+
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22112222 23578999988888888899999999765432211111110000 00012334799999998877
Q ss_pred Ee-----------CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceEEEec
Q 001352 955 VH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 955 ~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~-~l~t~~-~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
.. ++.|.+.|+.+++.+..+..+. ....+.|+|||+ +++++. .++.|.|+|+.+++.+.++.
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD 410 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence 42 3479999999999998876543 588899999999 888887 58999999999999998873
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.48 E-value=2e-10 Score=124.15 Aligned_cols=277 Identities=10% Similarity=0.037 Sum_probs=190.2
Q ss_pred CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352 335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 414 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las 414 (1093)
...+.+++++++|+ +.++...++.|.+||.. ++.... . +..+...+.++++.++|.+.++
T Consensus 19 ~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l~v~ 78 (300)
T 2qc5_A 19 DSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF-E-----------------VPTPDAKVMCLIVSSLGDIWFT 78 (300)
T ss_dssp TCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE-E-----------------CSSTTCCEEEEEECTTSCEEEE
T ss_pred CCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE-E-----------------CCCCCCcceeEEECCCCCEEEE
Confidence 34889999999998 56666678999999988 554321 1 2234467999999999998887
Q ss_pred EEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeE-EeecCCCCeEEee
Q 001352 415 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLC 493 (1093)
Q Consensus 415 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~-~~~~h~~~v~~~~ 493 (1093)
...++.|..||.. ++. . ...+......+..+++.++|. ++++...++.|..||.. ++... .+......+..++
T Consensus 79 ~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 79 ENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp ETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEE
T ss_pred ecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEE
Confidence 7668889999988 542 2 112333446789999999998 67777768899999987 65542 2333445677888
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceE-EecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeee-
Q 001352 494 PHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT- 571 (1093)
Q Consensus 494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~- 571 (1093)
+. +++.+.++...++.|..++. .+.... ........+..++++++|+..++... .+.|..||. +++....
T Consensus 153 ~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 153 LG--SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISEYD 224 (300)
T ss_dssp EC--TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEE
T ss_pred EC--CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEEE
Confidence 74 45666666666889999988 333322 22233456889999999987666532 446999998 5544332
Q ss_pred eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001352 572 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 651 (1093)
Q Consensus 572 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 651 (1093)
.... ...+.+++++++++..++...++.|..||. +++.. .+........+.+++++++|++.++.. . .|..++
T Consensus 225 ~~~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~ 297 (300)
T 2qc5_A 225 IPTP---NARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLN 297 (300)
T ss_dssp CSST---TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred CCCC---CCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence 2211 256889999999886666666789999998 45443 333332234578999999998665544 4 666666
Q ss_pred c
Q 001352 652 T 652 (1093)
Q Consensus 652 ~ 652 (1093)
.
T Consensus 298 p 298 (300)
T 2qc5_A 298 L 298 (300)
T ss_dssp E
T ss_pred C
Confidence 4
No 207
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.47 E-value=7.5e-12 Score=133.04 Aligned_cols=240 Identities=10% Similarity=-0.057 Sum_probs=166.3
Q ss_pred CeEEEEECCCCCEEE-EEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352 399 SVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 477 (1093)
Q Consensus 399 ~V~~v~~s~dg~~la-s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 477 (1093)
...+++++++|++++ +...++.|.+||..++.... ....+...+.+++++++|+ ++++.. ++.|.+||..++.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 788999999999777 44678899999987653211 1123335678999999998 566666 8899999976654
Q ss_pred eeEEee-cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCce
Q 001352 478 RTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 556 (1093)
Q Consensus 478 ~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 556 (1093)
. ..+. .....+..+++.+ ++.++++...++.|.+|+..+.............+..++++++|+.+++... .+
T Consensus 99 ~-~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~ 171 (270)
T 1rwi_B 99 Q-TVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN 171 (270)
T ss_dssp C-EECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GT
T ss_pred E-eeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CC
Confidence 3 3333 2335678888854 5667777778899999976554433322222346788999999986665543 45
Q ss_pred eEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC
Q 001352 557 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 636 (1093)
Q Consensus 557 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 636 (1093)
.|.+||..++.......... ..+..++++++|..+++...++.|.+|+..+..... ... .+...+.+++++++|+
T Consensus 172 ~i~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 172 RVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRT 246 (270)
T ss_dssp EEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCC
T ss_pred EEEEEecCCCceEeecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCC
Confidence 69999988766543322222 568899999999777777778899999987654433 221 2223478899999999
Q ss_pred EEEEEECCCeEEEEEcCCCc
Q 001352 637 LLAVIANENRIKILETPESN 656 (1093)
Q Consensus 637 ~l~~~~~dg~i~iw~~~~~~ 656 (1093)
++++...++.|++++....+
T Consensus 247 l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 247 VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEGGGTEEEEECCCGGG
T ss_pred EEEEECCCCEEEEEcCCCcc
Confidence 88888889999999987653
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.46 E-value=8.9e-12 Score=137.92 Aligned_cols=281 Identities=11% Similarity=0.093 Sum_probs=191.6
Q ss_pred CCCceEEEEEccC----CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE----
Q 001352 345 PVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---- 416 (1093)
Q Consensus 345 pdg~~llasg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~---- 416 (1093)
|++++++++...+ +.|.+.|..+++.+..... -..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v-------------------G~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG-------------------GFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-------------------CSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC-------------------CCCC--ceEECCCCCEEEEEecccc
Confidence 5677666665544 7999999999998876332 2234 799999999998886
Q ss_pred ------cCCEEEEEEccCCCcccceEEec--c---ccccEEEEEeeCCCCcEEEEEEc--CCCcEEEEECCCCceeEEee
Q 001352 417 ------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFE 483 (1093)
Q Consensus 417 ------~d~~i~iwd~~~~~~~~~~~~~~--~---h~~~v~~~~~s~d~~~l~l~s~~--~d~~i~vwd~~~~~~~~~~~ 483 (1093)
.++.|.++|..+++.+..+. +. . .......++|+|||++ ++.+. .++.|.+.|+.+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999987665432 22 0 0123456899999994 44444 36889999999999998886
Q ss_pred cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE----ecCCCCc-eEEEEEccCCCEEEEEecCCCCceeE
Q 001352 484 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFL 558 (1093)
Q Consensus 484 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~-v~~~~~s~d~~~l~~~~~~~~~~~~i 558 (1093)
.... ....+... ..+++.+.||.+.+.+....+.... +.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 4221 12222222 4667777888888888844443321 1111112 124567899888777654 4569
Q ss_pred EEEeCCCCeee--eeeecc-----c--ccCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceEEEEec
Q 001352 559 VEWNESEGAIK--RTYQGL-----Q--LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDA 619 (1093)
Q Consensus 559 ~iwd~~~~~~~--~~~~~~-----~--~~~~~v~~v~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 619 (1093)
.+.|...+... ..+... . ........++++|+++++++... .+.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655421 211110 0 00011223689999998887642 35799999999999999876
Q ss_pred CCCCCCCceEEEecCCC-EEEEEE-CCCeEEEEEcCCCceeeec
Q 001352 620 GGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAA 661 (1093)
Q Consensus 620 ~~~~~~v~~v~~s~~~~-~l~~~~-~dg~i~iw~~~~~~~~~~~ 661 (1093)
.. ....++|+|||+ ++++.. .++.|.++|..+.+.+..+
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 53 268899999999 888888 5899999999999888765
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=6.9e-12 Score=154.01 Aligned_cols=247 Identities=11% Similarity=0.010 Sum_probs=158.5
Q ss_pred CCCCceeeeecCCCceEEEEEccCC----cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCC
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 409 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg 409 (1093)
|+..+..++|||||++++.+.+.+| .|++||+.+|+.+.. . . +...+..++||||
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-----------------~--~~~~~~~~~wspD- 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-----------------L--KWVKFSGLAWLGN- 219 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-----------------E--EEEESCCCEESTT-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-----------------C--CCceeccEEEECC-
Confidence 4447889999999997544444334 599999999987642 0 0 1122357899999
Q ss_pred CEEEEEEcCCE--------------EEEEEccCCCcccceEEec--cccccEEEEEeeCCCCcEEEEEEcC-----CCcE
Q 001352 410 SLLGVAYSKHI--------------VQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGD-----DKTI 468 (1093)
Q Consensus 410 ~~las~~~d~~--------------i~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~s~d~~~l~l~s~~~-----d~~i 468 (1093)
+.|+.++.++. |++|++.++...... .+. .+...+..+.|||||+. |+..+. ...|
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l 296 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP-VFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTV 296 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEE-EECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEE-EeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceE
Confidence 99998876543 889999876532111 222 33346889999999994 444443 3489
Q ss_pred EEEECCCC--ceeEEeecCCCCeEEeeecccCCccEEEEEec----CCeEEEEEcCCCC-c-eEEecCCCCceEEEEEcc
Q 001352 469 KVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-A-RVDYDAPGLGCTRMAYSA 540 (1093)
Q Consensus 469 ~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~-~-~~~~~~~~~~v~~~~~s~ 540 (1093)
.+||+.++ ++...+..+...+....+ +++..|+..+. ++.|.+||+.+.. . ...+..+...+..++++
T Consensus 297 ~~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~- 372 (741)
T 1yr2_A 297 HVARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA- 372 (741)
T ss_dssp EEEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-
T ss_pred EEEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-
Confidence 99999887 425556555555544432 35566776665 3459999988742 2 33344444456677776
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEE----eCCCcEEEEECCCCce
Q 001352 541 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA----GDDHVIKIWDMNKVQL 613 (1093)
Q Consensus 541 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~----~~dg~i~iwd~~~~~~ 613 (1093)
++..+++... ++...|.+++.. +...+.+..+. ...+..+.++|+++.++.. ...++|++||+.+++.
T Consensus 373 ~~~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 373 GNRLFASYIH--DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp BTEEEEEEEE--TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCEEEEEEEE--CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4455555544 234556667764 44555554322 2568889999998866643 2457899999988873
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.38 E-value=1.7e-09 Score=116.72 Aligned_cols=243 Identities=12% Similarity=0.027 Sum_probs=168.7
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEE
Q 001352 393 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 472 (1093)
Q Consensus 393 ~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd 472 (1093)
+......+.++++.++|+..++...++.|.+||.. ++... ..+..+...+..+++.++|. ++++...++.|..||
T Consensus 15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d 89 (300)
T 2qc5_A 15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLS 89 (300)
T ss_dssp CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE--EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEEC
Confidence 33456788999999999988877778899999988 54221 12334446789999999998 677766678899999
Q ss_pred CCCCceeE-EeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCce-EEecCCCCceEEEEEccCCCEEEEEec
Q 001352 473 AVTGSRTY-SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGT 550 (1093)
Q Consensus 473 ~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l~~~~~ 550 (1093)
.. ++... .+......+..+++. +++.+.++...++.|..+|.. ++.. .........+..+++.++|+..++...
T Consensus 90 ~~-g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 165 (300)
T 2qc5_A 90 KK-GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ 165 (300)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred CC-CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC
Confidence 77 65432 222234567888875 466677777668899999887 3333 223334457889999999996655432
Q ss_pred CCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352 551 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 630 (1093)
Q Consensus 551 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 630 (1093)
.+.|..+|. +++... +.... ....+..++++++++.+++....+.|.+|+. +++.... ........+.+++
T Consensus 166 ----~~~i~~~~~-~g~~~~-~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~ 236 (300)
T 2qc5_A 166 ----NNSIGRITN-TGKLEE-YPLPT-NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAIT 236 (300)
T ss_dssp ----TTEEEEECT-TCCEEE-EECSS-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEE
T ss_pred ----CCeEEEECC-CCcEEE-eeCCC-CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEE
Confidence 446999998 555443 22111 1256889999999877666666778999998 5554433 2222234568899
Q ss_pred EecCCCEEEEEECCCeEEEEEcC
Q 001352 631 FNKNGTLLAVIANENRIKILETP 653 (1093)
Q Consensus 631 ~s~~~~~l~~~~~dg~i~iw~~~ 653 (1093)
++++|++.++...++.|..|+..
T Consensus 237 ~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 237 AGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp ECSTTCEEEEETTTTEEEEECTT
T ss_pred ECCCCCEEEeccCCCeEEEECCC
Confidence 99999876666667899999984
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.38 E-value=1.4e-10 Score=126.29 Aligned_cols=246 Identities=13% Similarity=0.099 Sum_probs=163.3
Q ss_pred CCceeeeecCCCceEEEE-------EccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 336 SSPMSMDFHPVQHTLLLV-------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llas-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
....+++|+++|+ ++++ +..++.|.+||..+++...... ....++...+.+++++++
T Consensus 18 ~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---------------~~~~~~~~~~~~i~~~~~ 81 (314)
T 1pjx_A 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------------PEVNGYGGIPAGCQCDRD 81 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEEC---------------CEETTEECCEEEEEECSS
T ss_pred CCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe---------------cccCCCCCCCceEEEecC
Confidence 3678999999997 5666 4667899999998887542100 001234567999999999
Q ss_pred -CCEEEEEEcCCEEEEEEccCCCcccc-eEEecc-ccccEEEEEeeCCCCcEEEEEEcCC---------------CcEEE
Q 001352 409 -GSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCGDD---------------KTIKV 470 (1093)
Q Consensus 409 -g~~las~~~d~~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d---------------~~i~v 470 (1093)
|+++++. ..+.|.+||.. ++.... .....+ ....+.+++++++|+ ++++...+ +.|..
T Consensus 82 ~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (314)
T 1pjx_A 82 ANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYC 157 (314)
T ss_dssp SSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred CCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEEE
Confidence 6655544 44479999988 653211 100011 224588999999998 56665544 56777
Q ss_pred EECCCCceeEEeecCCCCeEEeeec--ccCCccEEEE-EecCCeEEEEEcC-CCCc-----eEEecCCC-CceEEEEEcc
Q 001352 471 WDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHFIFS-ISVDGKIKAWLYD-SLGA-----RVDYDAPG-LGCTRMAYSA 540 (1093)
Q Consensus 471 wd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l~s-~~~dg~i~vwd~~-~~~~-----~~~~~~~~-~~v~~~~~s~ 540 (1093)
||.. ++..... .+......++++ .++++..++. ...++.|.+|+++ .+.. ...+..+. .....+++++
T Consensus 158 ~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~ 235 (314)
T 1pjx_A 158 FTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE 235 (314)
T ss_dssp ECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred ECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC
Confidence 7765 5544332 333445777775 1156655544 4568999999986 3321 11222232 5678899999
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 001352 541 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK 610 (1093)
Q Consensus 541 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~ 610 (1093)
+|+..++... .+.|.+||..+++.+..+..+. ..+.+++|+|+++.|+++ ..++.|..|++..
T Consensus 236 ~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 236 DNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TCCEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9988877643 4569999998787777766544 678999999999966554 4568899999864
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=2e-10 Score=125.11 Aligned_cols=245 Identities=9% Similarity=0.063 Sum_probs=163.2
Q ss_pred ceEEEEeecCCceEEE-------eeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCC-CCCCCCCeeE
Q 001352 737 KISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT-DSNSQEAVPC 808 (1093)
Q Consensus 737 ~i~~l~~s~~g~~l~~-------~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~ 808 (1093)
...+++|+++|..+++ ...++.+.+|+.... ... ....+ ..++...+.+
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g----------------------~~~-~~~~~~~~~~~~~~~~ 75 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG----------------------KKT-VICKPEVNGYGGIPAG 75 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC----------------------CEE-EEECCEETTEECCEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC----------------------cEE-EEEecccCCCCCCCce
Confidence 4578899999987776 566778888764322 111 10000 0013356889
Q ss_pred EEEccC-CCEEEEEeCCeEEEEEccCceeEEE-ECC----CCCCeEEEEEcCCCCCEEEEEeCC---------------C
Q 001352 809 FALSKN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD---------------S 867 (1093)
Q Consensus 809 l~~s~d-g~~la~~~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~s~~d~~~lasg~~d---------------g 867 (1093)
++++++ |+++++...+.|.+||.. ++.... ... ....+.++++++ +++++++...+ +
T Consensus 76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~ 153 (314)
T 1pjx_A 76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG 153 (314)
T ss_dssp EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence 999999 776666656689999988 665433 221 123578999999 78887776655 5
Q ss_pred eEEEEEcCCcceeeecccccCCeEEEEEe----CCCCEEEE-EeCCCcEEEEeCC-CCceeeeeeeecCCCcccCCCCce
Q 001352 868 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVS-SGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSET 941 (1093)
Q Consensus 868 ~i~iwd~~~~~~~~~l~~h~~~V~~l~~s----~dg~~l~s-~s~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~ 941 (1093)
.|..|+.. ++... +..+......++|+ |+++.|.. ...++.|.+|++. .++...........++.. ..+.
T Consensus 154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~ 229 (314)
T 1pjx_A 154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGAD 229 (314)
T ss_dssp EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEE
T ss_pred eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCC
Confidence 67777765 55433 33344557889999 99976544 4567889999986 443322222322222210 1367
Q ss_pred EEEEccCCCEEEEE-eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCC
Q 001352 942 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF-TSFVDGTLSIHEASNL 1011 (1093)
Q Consensus 942 ~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~-t~~~dg~v~vwd~~~~ 1011 (1093)
.++++++|++.++. .++.|.+||..+++.+..+ ..+...+.+++|++||+.|+ +...++.|..|++...
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 89999999988874 6789999999878766553 34457899999999999554 4445678999998753
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.33 E-value=5.4e-10 Score=125.56 Aligned_cols=242 Identities=12% Similarity=0.020 Sum_probs=163.6
Q ss_pred CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352 336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~ 415 (1093)
...+.++|+|+|+ |+++...++.|++||..++..... ... ..... ++|+|++++|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 3788999999998 788888889999999998866532 112 22233 9999999999988
Q ss_pred EcCC--EEEEEEccCCCcccceEEecc-ccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE----eecCCCC
Q 001352 416 YSKH--IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAP 488 (1093)
Q Consensus 416 ~~d~--~i~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~----~~~h~~~ 488 (1093)
..++ .|.+|+..++........+.. +...+.+++++|++.. |+.+..++.|+.||..++..... ..++...
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT 266 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence 7765 899999887654332211222 4566789999995553 44466688999999987764332 2222222
Q ss_pred e--EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------------CceEEEEEccCCCEEEEEecC
Q 001352 489 V--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------------LGCTRMAYSANGRRLFSCGTS 551 (1093)
Q Consensus 489 v--~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------------~~v~~~~~s~d~~~l~~~~~~ 551 (1093)
- ..++|++. ++.++++...++.|+.|+.+.. ...+.+.. .....++++++|+++++-.
T Consensus 267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-- 341 (409)
T 3hrp_A 267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-- 341 (409)
T ss_dssp SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence 2 27888653 3566777777899999987653 22222221 2468899999999665543
Q ss_pred CCCceeEEEEeCCCCeeeeeeeccc------------ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001352 552 KEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 608 (1093)
Q Consensus 552 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~ 608 (1093)
.+...|+.|+..++.. ..+.++. ........+++++++..+++-..++.|+.+++
T Consensus 342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0266799999877764 3343331 00245789999999877777777888887765
No 214
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.32 E-value=2.3e-10 Score=138.97 Aligned_cols=252 Identities=11% Similarity=0.056 Sum_probs=165.0
Q ss_pred cCCCCceeeeecCCCceEEEEEccC----CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC
Q 001352 333 EGSSSPMSMDFHPVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 408 (1093)
Q Consensus 333 ~h~~~V~~~~~spdg~~llasg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d 408 (1093)
+|...+..++|||||++++.+.+.. .+|++||+.+|+.+.. . + +......++|+ |
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~--~~~k~~~~~Ws-D 184 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------L--KDVKFSGISWL-G 184 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------E--EEEESCCCEEE-T
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------c--CCceeccEEEe-C
Confidence 3555788999999999755444333 4699999999986542 1 1 11113467899 9
Q ss_pred CCEEEEEEcCC-------------EEEEEEccCCCcccc-eEEecc-ccccEEEEEeeCCCCcEEEEEEc---CCCcEEE
Q 001352 409 GSLLGVAYSKH-------------IVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCG---DDKTIKV 470 (1093)
Q Consensus 409 g~~las~~~d~-------------~i~iwd~~~~~~~~~-~~~~~~-h~~~v~~~~~s~d~~~l~l~s~~---~d~~i~v 470 (1093)
|+.|+.++.+. .|++|++.++..... +..... |...+..+.|+|||+.+ +++.+ .+..|.+
T Consensus 185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~ 263 (693)
T 3iuj_A 185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYV 263 (693)
T ss_dssp TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEE
T ss_pred CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEE
Confidence 99999998774 499999987653211 111223 45567889999999963 33333 2358999
Q ss_pred EECCCCc-eeEEeecCCCCeEEeeecccCCccEEEEEecC---CeEEEEEcCCCCc--eEEecCCCCceEEEEEccCCCE
Q 001352 471 WDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRR 544 (1093)
Q Consensus 471 wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~ 544 (1093)
||+.++. ....+..+....... +.+. ++.+++....+ +.|..+++.+... ...+..+...+. .|+++++.
T Consensus 264 ~d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~ 339 (693)
T 3iuj_A 264 KDLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGY 339 (693)
T ss_dssp EETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTE
T ss_pred EECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCE
Confidence 9998774 455666666655554 3332 23444454443 6799999987654 234444444444 89999999
Q ss_pred EEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceE
Q 001352 545 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLL 614 (1093)
Q Consensus 545 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 614 (1093)
|+..... ++...|++|++..+.. +.+.... ...+..+.++++++.++....+ ++++.||+.+++..
T Consensus 340 lv~~~~~-~g~~~l~~~d~~g~~~-~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 340 LFAEYMV-DATARVEQFDYEGKRV-REVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEEEE-TTEEEEEEECTTSCEE-EEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEEEE-CCeeEEEEEECCCCee-EEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 8877642 3356799999885543 3333222 2456777788888877765444 88999999887654
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.32 E-value=3.9e-10 Score=122.96 Aligned_cols=174 Identities=9% Similarity=0.066 Sum_probs=136.3
Q ss_pred CCeeEEEEccCCCEEEEEeCCeEEEEEccCce-----------eEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001352 804 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 872 (1093)
Q Consensus 804 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iw 872 (1093)
..+..+++++...++++|+...+.+|++++.+ ..... .+.. |+.++| |+.+|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36889999999999999998888889986544 11222 2455 999999 57888888 88999999
Q ss_pred EcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEE
Q 001352 873 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 952 (1093)
Q Consensus 873 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 952 (1093)
|+.+.........|..++.++.+.+. .+++++.||.|.+||+.++.... + . ..|++++|||+| +.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~------~---~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---L------A---QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---E------E---ESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---c------c---CCceEEEEcCCc-eE
Confidence 99887666666778888988888765 38889999999999999765321 1 1 259999999999 44
Q ss_pred EEEeCCeEEEEEcCCcce--eeeee-----c---CCCCCEEEEEEccCCCEEEEEe
Q 001352 953 LLVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSF 998 (1093)
Q Consensus 953 ~~~~d~~i~vwd~~~~~~--~~~~~-----~---~h~~~v~~~~fs~dg~~l~t~~ 998 (1093)
+...||++++|+...++. ...+. . +|...|.++.|.+++.++++-+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 457899999999887775 44431 1 4788999999999999998744
No 216
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.31 E-value=4.9e-06 Score=97.98 Aligned_cols=534 Identities=9% Similarity=-0.016 Sum_probs=291.1
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeE
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 490 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~ 490 (1093)
+|+.+ ..+.|+..++.+..... ...+. .-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 55554 55679999998654211 11122 2346789999997764 556666788999999876544333332224466
Q ss_pred EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeee
Q 001352 491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 570 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 570 (1093)
.+++.+. ++.+.++-...+.|.+.+++...........-.....+++.|....|+..... ....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence 7777543 33456666677889999987655444443444567899999976666665421 14568888876544333
Q ss_pred eeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001352 571 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 649 (1093)
Q Consensus 571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 649 (1093)
.... ......++++++++.|+.+. ..+.|...|+..... ..+... ......+++.. +.++++-...+.|..
T Consensus 161 l~~~----~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 161 LVPN----VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp EECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EECC----CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 3322 25678999999877777654 567899999876544 333222 22345777765 444455455788988
Q ss_pred EEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcccccccc
Q 001352 650 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 729 (1093)
Q Consensus 650 w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~ 729 (1093)
.+..++.....+.........+.+....... +...+. ..++ +. ..+.+-... ....|. ..
T Consensus 233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~~n~C~-------~~ng-----~C--~~~C~~~~~--~~~~C~--C~ 292 (628)
T 4a0p_A 233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--GWNECA-------SSNG-----HC--SHLCLAVPV--GGFVCG--CP 292 (628)
T ss_dssp EETTTCCSCEEEECSCCSCCEEEEECGGGSC--CCCTTT-------TTGG-----GC--SSEEEEETT--TEEEEE--CS
T ss_pred EECCCCCceEEEecCCCCcceeeeeeecccc--cceEec-------cCCC-----Cc--chhhhcCCC--CCeeEE--cC
Confidence 8877665544444332222333222111000 000000 0000 00 000000000 000000 00
Q ss_pred Cc-cccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeE
Q 001352 730 PS-KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 808 (1093)
Q Consensus 730 ~~-~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 808 (1093)
+. .......+|. +....++.+. ...|+-..+... ... -..... ..-..+..
T Consensus 293 ~g~~l~~d~~~C~---~~~~~Ll~s~-~~~i~~i~l~~~--------------------~~~-~~~l~~---~~~~~~~~ 344 (628)
T 4a0p_A 293 AHYSLNADNRTCS---APTTFLLFSQ-KSAINRMVIDEQ--------------------QSP-DIILPI---HSLRNVRA 344 (628)
T ss_dssp TTCEECTTSSCEE---CCSSEEEEEE-TTEEEEECCCTT--------------------CCC-CEECCC---TTCSCEEE
T ss_pred CCcEecccCCcCc---cccceeeeec-cceEEEEecccc--------------------cCc-eEEEEe---hhcCCceE
Confidence 00 0000011111 1122222222 223332221110 000 001111 12345778
Q ss_pred EEEccCCCEEEEEe--CCeEEEEEccCceeEEEECC------CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCccee
Q 001352 809 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 880 (1093)
Q Consensus 809 l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~ 880 (1093)
++|.+....|..+. .+.|..++.........+.. ....+..+|+....+.+..+-+..+.|.+.++. |+..
T Consensus 345 ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~ 423 (628)
T 4a0p_A 345 IDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSV 423 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEE
T ss_pred EEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeE
Confidence 99999888777776 47788888764433333332 234678999988334455566677899999986 5544
Q ss_pred eecc-cccCCeEEEEEeC-CCCEEEEEeCCC--cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-
Q 001352 881 SKLE-GHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 955 (1093)
Q Consensus 881 ~~l~-~h~~~V~~l~~s~-dg~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~- 955 (1093)
..+. .......++++.| .|.++.+-.... .|...++++..... .+. ... .....+++.++++.|..+
T Consensus 424 ~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~---~~l---~~P~gla~D~~~~~LYw~D 495 (628)
T 4a0p_A 424 GVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFF---SGL---SKPIALALDSRLGKLFWAD 495 (628)
T ss_dssp EEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EEC---SSC---SCEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEe---ccC---CCccEEEEeCCCCEEEEEe
Confidence 4432 3456689999999 555555533332 46666666533211 111 111 257899999998888775
Q ss_pred -eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352 956 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 956 -~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
..+.|...++. |.....+.........++++.. +.++++-...+.|...|..+|+....+.
T Consensus 496 ~~~~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 496 SDLRRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp TTTTEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred CCCCEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 34689999985 4444444433445567788754 5555555566788888888776544443
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.30 E-value=4.9e-10 Score=120.57 Aligned_cols=228 Identities=12% Similarity=0.101 Sum_probs=154.2
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 416 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~ 416 (1093)
-..+..|+|++..++++...++.|..||..+++.... .....+.+++++++|+++++ .
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~i~~~~dG~l~v~-~ 71 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV---------------------TMDAPVSSVALRQSGGYVAT-I 71 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---------------------ECSSCEEEEEEBTTSSEEEE-E
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------eCCCceEEEEECCCCCEEEE-E
Confidence 4568999997767888888899999999998765321 13467999999999996554 3
Q ss_pred cCCEEEEEEccCCCcccceEEecc--ccccEEEEEeeCCCCcEEEEEE-cC--------CCcEEEEECCCCceeEEeecC
Q 001352 417 SKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITC-GD--------DKTIKVWDAVTGSRTYSFEGH 485 (1093)
Q Consensus 417 ~d~~i~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~s~d~~~l~l~s~-~~--------d~~i~vwd~~~~~~~~~~~~h 485 (1093)
++.|.+||..+++. ..+..... ....+++++++|+|+ ++++. .. ...-.||.+.....+..+..+
T Consensus 72 -~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~ 147 (297)
T 3g4e_A 72 -GTKFCALNWKEQSA-VVLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ 147 (297)
T ss_dssp -TTEEEEEETTTTEE-EEEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE
T ss_pred -CCeEEEEECCCCcE-EEEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEEEeec
Confidence 56799999988753 22212111 234688999999998 44443 21 123455554432223333334
Q ss_pred CCCeEEeeecccCCccEE-EEEecCCeEEEEEcC--CCCce-----EEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352 486 GAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 557 (1093)
Q Consensus 486 ~~~v~~~~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~~~~-----~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 557 (1093)
....+.++|++ +++.+ ++.+.++.|.+|+++ ++... ..+.........++++++|++.++... .+.
T Consensus 148 ~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~----~~~ 221 (297)
T 3g4e_A 148 VDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN----GGR 221 (297)
T ss_dssp ESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----TTE
T ss_pred cccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----CCE
Confidence 44567888854 55555 556678999999984 33221 122223346788999999987776643 456
Q ss_pred EEEEeCCCCeeeeeeecccccCCCeEEEEEc-CCCCEEEEEeC
Q 001352 558 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 599 (1093)
Q Consensus 558 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~~~ 599 (1093)
|..||..+|+.+..+..+. ..+.+++|. |+++.|++++.
T Consensus 222 v~~~d~~tG~~~~~i~~p~---~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKLPV---DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECTTTCCEEEEEECSS---SBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEcCCCceEEEEEECCC---CCceEEEEeCCCCCEEEEEcC
Confidence 9999999999988887664 678999998 88888777654
No 218
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.29 E-value=1e-10 Score=128.83 Aligned_cols=273 Identities=11% Similarity=0.015 Sum_probs=175.4
Q ss_pred CCceeeeecCCCceEEEEEc--cCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352 336 SSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 413 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la 413 (1093)
..+..++++|+|+ ++++.. .++.++||.+.+++.. .+.-|.. ...+|-..+..++++++|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~~----------~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQSG----------NAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCCS----------SCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCccc----------CcccceeEeeEEEEcCCCcEEE
Confidence 4789999999998 566653 2343667766555422 2211110 0224667899999999998766
Q ss_pred EEEc-----CCEEEEEEccCCCcccceEEec----cccccEEEEEeeCCCCcEEEEEEc---CCCcEEEEECCCCceeEE
Q 001352 414 VAYS-----KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYS 481 (1093)
Q Consensus 414 s~~~-----d~~i~iwd~~~~~~~~~~~~~~----~h~~~v~~~~~s~d~~~l~l~s~~---~d~~i~vwd~~~~~~~~~ 481 (1093)
+-.. ++.|.+||+.+++.++.+ .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 6544 578999999988744422 221 12345689999987653 456655 678999999999988777
Q ss_pred eecCCCCeE-EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352 482 FEGHGAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 560 (1093)
Q Consensus 482 ~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 560 (1093)
+.+|..... ...+ ..++..+.+.+.+|.++.|. ..+..++++|||+.|+++... ...++.
T Consensus 161 ~~~~~~~~~~~~~~--~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDL--VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCC--EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred ecCCCcccccccce--eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence 765532211 1222 22455677777788876663 135789999999998887642 224655
Q ss_pred EeCC---CCe-----eeee--eecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352 561 WNES---EGA-----IKRT--YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 630 (1093)
Q Consensus 561 wd~~---~~~-----~~~~--~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 630 (1093)
++.. .+. .... ..++. .....++++++|..+++...++.|.+||..+++........ ......+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va 297 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFN 297 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEE
T ss_pred EEHHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeE
Confidence 5532 111 0111 11222 34567899999998888888999999998666654333321 223467899
Q ss_pred EecCCCEEEEEECCCeE
Q 001352 631 FNKNGTLLAVIANENRI 647 (1093)
Q Consensus 631 ~s~~~~~l~~~~~dg~i 647 (1093)
|.+++.++++....+.+
T Consensus 298 ~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 298 FGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp ECTTSCEEEEECCGGGS
T ss_pred ECCCCcEEEEeCccccc
Confidence 99998877776654433
No 219
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.29 E-value=1.5e-10 Score=126.06 Aligned_cols=196 Identities=11% Similarity=0.005 Sum_probs=128.7
Q ss_pred eEEEEccCCCEEEEEe---CCeEEE--EEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-----
Q 001352 807 PCFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----- 876 (1093)
Q Consensus 807 ~~l~~s~dg~~la~~~---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~----- 876 (1093)
..++++|||++++++. ++.+.+ +|+.+ +..+.... . ..+.|++.+.+++.+.||.+.+.++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 3578889998888875 256888 88877 44443211 1 223343455666677888888888886
Q ss_pred cceeee----cccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecC------CCcccCCCCceEEEEc
Q 001352 877 SEVISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFH 946 (1093)
Q Consensus 877 ~~~~~~----l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s 946 (1093)
++.... +.-...+. + ++++..++..+. +.|.+.|+.+........+... .+... .....++|+
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s 272 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKL 272 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEE
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEc
Confidence 544321 11122333 3 677777776677 8999999976432211111111 01000 123337899
Q ss_pred cCCCEEEEE-e-C--------CeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceE
Q 001352 947 KDQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQ 1014 (1093)
Q Consensus 947 ~dg~~l~~~-~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~-~l~t~~-~dg~v~vwd~~~~~~~ 1014 (1093)
||++.+.++ . . +.+.++|+.+++.+..+..+. ....++|+|||+ ++++.. .++.|.++|+.+++.+
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 999988874 3 2 367799999999988866543 688999999998 566666 5899999999999999
Q ss_pred EEec
Q 001352 1015 CRIL 1018 (1093)
Q Consensus 1015 ~~~~ 1018 (1093)
.++.
T Consensus 351 ~~I~ 354 (368)
T 1mda_H 351 SSVE 354 (368)
T ss_dssp EECC
T ss_pred EEEE
Confidence 8886
No 220
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.29 E-value=1.2e-09 Score=122.70 Aligned_cols=247 Identities=10% Similarity=-0.004 Sum_probs=164.4
Q ss_pred CCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCccee
Q 001352 804 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 880 (1093)
Q Consensus 804 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~i~iwd~~~~~~~ 880 (1093)
.....++++++++++++.. ++.|++||..++......... .... ++|++ +++.|+++..++ .|.+|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 3567899999999776665 488999999988776555442 3334 99999 888888888766 7999998766543
Q ss_pred eec----ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCce-EEEEccCCCEEEEE
Q 001352 881 SKL----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET-HIQFHKDQTRFLLV 955 (1093)
Q Consensus 881 ~~l----~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~~~ 955 (1093)
..+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+... .... .++|+|++..|.++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEEE
Confidence 333 224566788999995555555777889999999876532211110 111111 1113 99999965555543
Q ss_pred --eCCeEEEEEcCCcceeeeeecCC---------------CCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceEEEe
Q 001352 956 --HETHLAIYEAEELTCLKQWFPIS---------------SVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRI 1017 (1093)
Q Consensus 956 --~d~~i~vwd~~~~~~~~~~~~~h---------------~~~v~~~~fs~dg~~l~t~~-~dg~v~vwd~~~~~~~~~~ 1017 (1093)
.++.|+.|+.... +..+. ++ -.....++|+++|.++++-+ .+++|+.|++.++......
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 5678999987643 22211 22 13578999999999888877 7899999998888654332
Q ss_pred ccccccCCCC-----CCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352 1018 LSTAYLRPTT-----SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus 1018 ~~~~~~~~~~-----~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
. ........ ...--.|..++++|+ +.++++-..+++|+.+.+
T Consensus 362 g-~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 G-QVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp E-CTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred C-CCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 2 10000000 001135778999994 788888888888888765
No 221
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.29 E-value=1.3e-09 Score=117.22 Aligned_cols=228 Identities=10% Similarity=0.052 Sum_probs=149.2
Q ss_pred ceEEEEeecCCceE-EEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCC
Q 001352 737 KISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 815 (1093)
Q Consensus 737 ~i~~l~~s~~g~~l-~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 815 (1093)
-..+..|++++..+ ++...++.|..|+... +. ..... ....+.+++++++|
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~-~~~~~-----~~~~~~~i~~~~dG 65 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFT----------------------KQ-VQRVT-----MDAPVSSVALRQSG 65 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTT----------------------CC-EEEEE-----CSSCEEEEEEBTTS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCC----------------------Cc-EEEEe-----CCCceEEEEECCCC
Confidence 34578889865544 4444567777776432 22 11111 34568899999999
Q ss_pred CEEEEEeCCeEEEEEccCceeEEEECC----CCCCeEEEEEcCCCCCEEEEEeCC---------CeEEEEEcCC-cceee
Q 001352 816 AYLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARS-SEVIS 881 (1093)
Q Consensus 816 ~~la~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~d---------g~i~iwd~~~-~~~~~ 881 (1093)
+++++ .++.|.+||..+++....... ....+..++++| +++++++.... ..-.||.+.. ++. .
T Consensus 66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~ 142 (297)
T 3g4e_A 66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-K 142 (297)
T ss_dssp SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-E
T ss_pred CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-E
Confidence 95554 577899999988765433322 123578899999 88877654321 2334555443 333 2
Q ss_pred ecccccCCeEEEEEeCCCCEEE-EEeCCCcEEEEeC--CCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eC
Q 001352 882 KLEGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 957 (1093)
Q Consensus 882 ~l~~h~~~V~~l~~s~dg~~l~-s~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d 957 (1093)
.+..+......++|+||++.|. +.+.++.|.+|++ .++.....+.+....... ..+..++++++|++.++. ..
T Consensus 143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence 2333445568899999998764 5556788999997 455433323333222211 246789999999988775 46
Q ss_pred CeEEEEEcCCcceeeeeecCCCCCEEEEEEc-cCCCEEEEEeC
Q 001352 958 THLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFV 999 (1093)
Q Consensus 958 ~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs-~dg~~l~t~~~ 999 (1093)
+.|.+||..+|+.+..+. .+...+++++|+ ||++.|+.++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcC
Confidence 789999999998887754 345689999998 89887765554
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.26 E-value=2.5e-10 Score=124.38 Aligned_cols=273 Identities=10% Similarity=-0.035 Sum_probs=174.7
Q ss_pred ceEEEEEccCC----cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE-------
Q 001352 348 HTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY------- 416 (1093)
Q Consensus 348 ~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~------- 416 (1093)
.+++++-..++ +|.+.|..+++.+..... ...+ .+++||||++++++.
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~v-------------------G~~P--~i~~spDg~~lyVan~~~~r~~ 90 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG-------------------AFLS--LAVAGHSGSDFALASTSFARSA 90 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-------------------CTTC--EEEECTTSSCEEEEEEEETTTT
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEeC-------------------CCCC--ceEECCCCCEEEEEcccccccc
Confidence 34566655555 788999999998876332 2234 799999999999986
Q ss_pred ---cCCEEEEEEccCCCcccceEEeccc-----cccEEEEEeeCCCCcEEEEEEc--CCCcEEE--EECCCCceeEEeec
Q 001352 417 ---SKHIVQLYAYHGGSDARQQLEIDAH-----VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEG 484 (1093)
Q Consensus 417 ---~d~~i~iwd~~~~~~~~~~~~~~~h-----~~~v~~~~~s~d~~~l~l~s~~--~d~~i~v--wd~~~~~~~~~~~~ 484 (1093)
.++.|.+||..+++.+..+. +.+. ......++|+|||++ ++.+. .+..+.+ +|..+ +.++..
T Consensus 91 ~G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v 164 (368)
T 1mda_H 91 KGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKS 164 (368)
T ss_dssp SSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEEC
T ss_pred cCCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEEC
Confidence 36789999999998766432 2200 123457999999995 44443 3567888 99877 455532
Q ss_pred CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCC-----CCceE----EecCCCCceEEEEEccCCCEEEEEecCCCCc
Q 001352 485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 555 (1093)
Q Consensus 485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~----~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 555 (1093)
- +. ..+.+.+. ..+++.+.||.+.+.++.+ ++... .+.....+. . ++++..++..+.
T Consensus 165 ~-~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~----- 230 (368)
T 1mda_H 165 A-SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA----- 230 (368)
T ss_dssp S-SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----
T ss_pred C-Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----
Confidence 1 11 12223322 3455667788888888776 22111 011112222 3 666666665543
Q ss_pred eeEEEEeCCCCe--eeeeeecc-------cccCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCceEEEE
Q 001352 556 SFLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD---------DHVIKIWDMNKVQLLTTI 617 (1093)
Q Consensus 556 ~~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~v~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~ 617 (1093)
+.+.+.|..++. .+..+... .........+.++|++++++++.. ++.+.++|+.+++.+..+
T Consensus 231 ~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i 310 (368)
T 1mda_H 231 SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI 310 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECC
T ss_pred CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEE
Confidence 348888886532 22222110 000011222689999999887543 235679999999999888
Q ss_pred ecCCCCCCCceEEEecCCCE-EEEEE-CCCeEEEEEcCCCceeeecccc
Q 001352 618 DAGGGLPENPRICFNKNGTL-LAVIA-NENRIKILETPESNSVDAAGVL 664 (1093)
Q Consensus 618 ~~~~~~~~v~~v~~s~~~~~-l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 664 (1093)
.... ....++|+|||++ +++.. .++.|.++|+.+.+.+..+...
T Consensus 311 ~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 311 SNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD 356 (368)
T ss_dssp EEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred ECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence 7654 3688999999984 55555 5899999999999888877644
No 223
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.25 E-value=1e-09 Score=118.52 Aligned_cols=237 Identities=11% Similarity=0.044 Sum_probs=158.6
Q ss_pred hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352 331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 410 (1093)
Q Consensus 331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~ 410 (1093)
|..+.......+|+|+|++|++++..++.|..|+. +++.. . +..+...+..++++++|+
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~-------------------~~~~~~~~~gl~~d~dG~ 98 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-V-------------------LLDATAFTNGNAVDAQQR 98 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-E-------------------EEESCSCEEEEEECTTSC
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-E-------------------EeCCCCccceeeECCCCC
Confidence 44455578899999999988899988999999998 45422 1 223556789999999999
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEeccc-cccEEEEEeeCCCCcEEEEE----EcC-------------CCcEEEEE
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DKTIKVWD 472 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~d~~~l~l~s----~~~-------------d~~i~vwd 472 (1093)
++++...++.|.+|+.. ++.........+. ...+.++++.++|+ +.+| |.. .+.|..||
T Consensus 99 l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 99 LVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred EEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 77766666789999986 4421111111111 23467899999998 6665 332 25688888
Q ss_pred CCCCceeEEeecCCCCeEEeeecccCCccEEEEEecC------CeEEEEEcCCCCc---eEEecCCCCceEEEEEccCCC
Q 001352 473 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGR 543 (1093)
Q Consensus 473 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~ 543 (1093)
..+++..... .....+.++|+ +|+..|+.+... +.|.+|++..... .............++++++|+
T Consensus 176 ~~~g~~~~~~--~~~~p~gl~~s--pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~ 251 (305)
T 3dr2_A 176 PDGSPLQRMA--DLDHPNGLAFS--PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW 251 (305)
T ss_dssp SSSCCCEEEE--EESSEEEEEEC--TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC
T ss_pred CCCCcEEEEe--cCCCCcceEEc--CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC
Confidence 7777655433 33456778884 466667666654 7899999875431 111122233456789999999
Q ss_pred EEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001352 544 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 607 (1093)
Q Consensus 544 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd 607 (1093)
+.++. . + .|.+|+. .++.+..+.... .+..++|+++++.|++++.++ ++.++
T Consensus 252 lwv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 252 LWSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp EEECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred EEEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 55543 2 2 3999998 566666666543 478899999998888888754 44333
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.24 E-value=3.1e-10 Score=124.91 Aligned_cols=272 Identities=7% Similarity=0.001 Sum_probs=175.4
Q ss_pred cceEEEEeecCCceEEEeec--cceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEcc
Q 001352 736 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 813 (1093)
Q Consensus 736 ~~i~~l~~s~~g~~l~~~~~--dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 813 (1093)
.....++++++|+.+++... ++.++||.+..... .-|- +.. ....++-..+..+++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~------------~~~p--~~~------~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL------------IPFP--PQS------GNAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE------------EESC--CCC------SSCCCCCSCEEEEEECS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe------------ecCC--Ccc------cCcccceeEeeEEEEcC
Confidence 46788999999998777542 34367777641110 0010 000 00112566889999999
Q ss_pred CCCEEEEEe------CCeEEEEEccCceeEEEECCC------CCCeEEEEEcCCCCCEEEEEe---CCCeEEEEEcCCcc
Q 001352 814 NDAYLFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSE 878 (1093)
Q Consensus 814 dg~~la~~~------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~---~dg~i~iwd~~~~~ 878 (1093)
+|+++++-. ++.|.+||+.+++.+..+..+ ...+..++++++++..+++.. .++.|.+||+.+++
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 998776553 368999999999877766432 235689999983455555555 67899999999988
Q ss_pred eeeecccccCCeE-EEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEe-
Q 001352 879 VISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH- 956 (1093)
Q Consensus 879 ~~~~l~~h~~~V~-~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~- 956 (1093)
....+.+|..... ...++++|..+.+.+.++.++.|.. .+..++|+|||+.|.++.
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence 8777766533211 1455668888888888887766531 256799999999888753
Q ss_pred CC-eEEEEEcCC---cc-----eeee-eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCC
Q 001352 957 ET-HLAIYEAEE---LT-----CLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1026 (1093)
Q Consensus 957 d~-~i~vwd~~~---~~-----~~~~-~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 1026 (1093)
.+ .+..++... +. .... ...++......++++++|.++++...++.|.+||..+++...... .+
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~-- 288 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DE-- 288 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CG--
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CC--
Confidence 33 455555321 10 0000 011233456678999999999999889999999996665432222 11
Q ss_pred CCCCccceeEEEeCCCCCCEEEEEeCCCcEEEE
Q 001352 1027 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1059 (1093)
Q Consensus 1027 ~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w 1059 (1093)
...++..++++| ++.++++....+.+.+|
T Consensus 289 ---~~~~p~~va~~~-~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 289 ---KLSWTDSFNFGS-DGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ---GGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred ---ceecCCeeEECC-CCcEEEEeCcccccccc
Confidence 123566788988 57888887766555444
No 225
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.24 E-value=4.4e-10 Score=136.40 Aligned_cols=245 Identities=10% Similarity=0.071 Sum_probs=159.5
Q ss_pred CCCCCeEEEEECCCCCEEEEEEc-----CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCC---
Q 001352 395 DPGVSVNRVVWSPDGSLLGVAYS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 466 (1093)
Q Consensus 395 ~h~~~V~~v~~s~dg~~las~~~-----d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~--- 466 (1093)
+|...+..++|||||++||.+.. ...|++||+.+|+.+.. .+.+ .....++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCccc
Confidence 46667889999999999996532 24799999999874432 1211 113578999 999 455555553
Q ss_pred ----------cEEEEECCCCce----eEEeec-CCCCeEEeeecccCCccEEEEEec----CCeEEEEEcCCCC-ceEEe
Q 001352 467 ----------TIKVWDAVTGSR----TYSFEG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY 526 (1093)
Q Consensus 467 ----------~i~vwd~~~~~~----~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~-~~~~~ 526 (1093)
.|++|++.++.. +..... |...+..+.+ ++||++|+.... ++.|.++|+.+.. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999988753 222233 4445666777 557777755433 2479999988764 33444
Q ss_pred cCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--eeeeecccccCCCeEEEEEcCCCCEEEEEeCCC---
Q 001352 527 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--- 601 (1093)
Q Consensus 527 ~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg--- 601 (1093)
..+....... ++++|..++..+........|..+|+.++.. .+.+..+. ..+. .|++++++|+....++
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence 4444444444 6788887776665433357899999988754 34454444 3343 8889999888765443
Q ss_pred cEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECC----CeEEEEEcCCCc
Q 001352 602 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN 656 (1093)
Q Consensus 602 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iw~~~~~~ 656 (1093)
.|++|++.++ ....+.... ...+..+.+++++..++....+ +++..||+.+++
T Consensus 351 ~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 6889998754 444554332 1234556677888877766554 789999987664
No 226
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.22 E-value=5.6e-09 Score=125.16 Aligned_cols=228 Identities=14% Similarity=0.124 Sum_probs=151.0
Q ss_pred CCeEEEEEccCceeEEEECCCCC--------------------------------CeEEEEEcCCCCCEEEEEeCCC---
Q 001352 823 GGVISLYIVMTFKTILTIMPPSP--------------------------------TATSLAFNPHDNNVIAIGMDDS--- 867 (1093)
Q Consensus 823 dg~i~iwd~~~~~~~~~~~~~~~--------------------------------~i~~l~~s~~d~~~lasg~~dg--- 867 (1093)
++.|+.+|..+|+.+.++..... ....++++| ++.+|+.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 46677777777777766543211 113578888 677888887664
Q ss_pred ----------------eEEEEEcCCcceeeeccc--cc-------CCeEEEEEeCCC---CEEEEEeCCCcEEEEeCCCC
Q 001352 868 ----------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGW 919 (1093)
Q Consensus 868 ----------------~i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg---~~l~s~s~dg~i~iwd~~~~ 919 (1093)
.|..+|..+|+.+..++. |. .....+....+| +.++.++.+|.|.++|..++
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999999877653 31 122333444577 68999999999999999998
Q ss_pred ceeeeeeeecC--------CCcc-----------------cC--CCCceEEEEccCCCEEEEE-eC--------------
Q 001352 920 GIQTCRSLQTP--------DGVM-----------------TL--APSETHIQFHKDQTRFLLV-HE-------------- 957 (1093)
Q Consensus 920 ~~~~~~~~~~~--------~~~~-----------------~~--~~~v~~~~~s~dg~~l~~~-~d-------------- 957 (1093)
+.......... .+.. .. ...-..++|+|++.++.+. .+
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 86432211100 0000 00 0011367999999988773 21
Q ss_pred -----------------------------CeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001352 958 -----------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus 958 -----------------------------~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~ 1008 (1093)
+.|..||+.+|+.+-+.. +..++....++.+|.++++++.||.+++||.
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 679999999999876644 3344555667788889999999999999999
Q ss_pred CCCceEEEeccccccCCCCCCCccceeEEEeCCCCCC-EEEEEeC----------------CCcEEEEecCC
Q 001352 1009 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT-QFAVGLT----------------NGEVYVIEPNE 1063 (1093)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~-~l~~~~~----------------dg~v~~w~~~~ 1063 (1093)
.+|+.+.++.... + +...-+.|.+ +|+ ++++.+. .+.+.+|.+..
T Consensus 506 ~tG~~lw~~~~~~----~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 506 ATGEKLWEAPTGT----G-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp TTCCEEEEEECSS----C-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCceeeeeeCCC----C-----cccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 9999999887322 1 2222244544 354 4444333 47899999873
No 227
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.21 E-value=4.4e-09 Score=114.64 Aligned_cols=225 Identities=13% Similarity=0.022 Sum_probs=149.7
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 416 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~ 416 (1093)
-..+.+|+|++..+++++..++.|..||..+++... + .....|.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-ECCCcceEEEEeCCCeEEEEE-
Confidence 346789999877788888888999999998875432 1 123579999999999887764
Q ss_pred cCCEEEEEEccCCCcccceEEec-c-ccccEEEEEeeCCCCcEEEEEEcC------CCcEEEEECCCCceeEEeecCCCC
Q 001352 417 SKHIVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAP 488 (1093)
Q Consensus 417 ~d~~i~iwd~~~~~~~~~~~~~~-~-h~~~v~~~~~s~d~~~l~l~s~~~------d~~i~vwd~~~~~~~~~~~~h~~~ 488 (1093)
.+ .|.+||..+++... ..... + ....+.+++++++|+ ++++... .+.|..++ +++.. .+..+...
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~ 180 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI 180 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence 44 49999998876321 11111 1 124689999999998 4444332 24455556 55443 33233345
Q ss_pred eEEeeecccCCccEEE-EEecCCeEEEEEcC--CC-Cc-----eEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352 489 VYSLCPHAKENIHFIF-SISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 559 (1093)
Q Consensus 489 v~~~~~~~~~~~~~l~-s~~~dg~i~vwd~~--~~-~~-----~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 559 (1093)
...++|+ ++++.++ +.+.++.|.+|+++ ++ .. ...+.........++++++|++.++... .+.|.
T Consensus 181 ~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~ 254 (326)
T 2ghs_A 181 PNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD 254 (326)
T ss_dssp EEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred cCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence 6778885 4565554 44567899999986 43 21 1122223446778999999987776542 34699
Q ss_pred EEeCCCCeeeeeeecccccCCCeEEEEEc-CCCCEEEEEeCC
Q 001352 560 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDD 600 (1093)
Q Consensus 560 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~~~d 600 (1093)
.||. +++.+..+.... ..+.+++|+ ++++.|++++..
T Consensus 255 ~~d~-~g~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEEECCC---CCcEEEEEecCCCCEEEEEecC
Confidence 9998 577766666544 578999998 888877665543
No 228
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.18 E-value=1.8e-05 Score=93.07 Aligned_cols=519 Identities=8% Similarity=-0.018 Sum_probs=270.8
Q ss_pred CCEEEEEEccCCC-cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce-eEEeecCCCCeEEeeec
Q 001352 418 KHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPH 495 (1093)
Q Consensus 418 d~~i~iwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~ 495 (1093)
...|+..++.... ... .+...-.....++|++.+.. ++++-...+.|..+++..... ...+...-.....+++.
T Consensus 17 ~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD 92 (619)
T 3s94_A 17 RRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 92 (619)
T ss_dssp SSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred cccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence 4457777776542 111 12223445778999997774 455555677899999776532 22333333567788886
Q ss_pred ccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecc
Q 001352 496 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 575 (1093)
Q Consensus 496 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 575 (1093)
+. ++.+.++-...+.|.+.+++...........-.....+++.|.+..|+..... ....|...++..... ..+...
T Consensus 93 ~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~-~~l~~~ 168 (619)
T 3s94_A 93 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSR-FIIINS 168 (619)
T ss_dssp TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSC-EEEECS
T ss_pred ec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCce-EEEEeC
Confidence 53 33566666778899999988665544444444567789999986666665421 134577777654332 222211
Q ss_pred cccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352 576 QLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 654 (1093)
Q Consensus 576 ~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 654 (1093)
. ......++++++++.|+.+ ...+.|...|+............ ......+++..+ ..+++-...+.|...+..+
T Consensus 169 ~--~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~t 243 (619)
T 3s94_A 169 E--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYT 243 (619)
T ss_dssp S--CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSS
T ss_pred C--CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCC
Confidence 1 2467899999987777665 45678999988764443333211 122457777665 4444444578899989877
Q ss_pred Cceeeecccccccceeeeec-CCCceee--ee----ccCCceEecCCCCCCCccceeecccccceecceeeccCcccccc
Q 001352 655 SNSVDAAGVLSDNLRKLSVN-PISTVTG--AG----IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 727 (1093)
Q Consensus 655 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~--~~----~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~ 727 (1093)
++....+.........+++. +.....+ .+ .....+.+. +|......+...+|..
T Consensus 244 g~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~---~~~~~~~~C~C~~g~~---------------- 304 (619)
T 3s94_A 244 GEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLM---SPVKPFYQCACPTGVK---------------- 304 (619)
T ss_dssp CCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEE---CSSTTSEEEECCTTCC----------------
T ss_pred CcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEEC---CCCCCCceEeCCchhe----------------
Confidence 76555444332223333332 1110000 00 000001110 0000000000000000
Q ss_pred ccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCee
Q 001352 728 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 807 (1093)
Q Consensus 728 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 807 (1093)
+. ....+|. +..+.++..+..+.++..++..... . .....+. .-..+.
T Consensus 305 -l~----~d~~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~--------------------~-~~~~~~~---~l~~~~ 352 (619)
T 3s94_A 305 -LL----ENGKTCK---DGATELLLLARRTDLRRISLDTPDF--------------------T-DIVLQLE---DIRHAI 352 (619)
T ss_dssp -BC----TTSSCBC---SSCSEEEEEEESSCEEEEESSSTTC--------------------C-CEECCCS---CCSSEE
T ss_pred -ec----ccCcccC---CCCceEEEEEcccceEEEecCCCcc--------------------c-eeEEecc---ccCccE
Confidence 00 0000000 0111223333344455444332110 0 0011111 234567
Q ss_pred EEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec-c
Q 001352 808 CFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-E 884 (1093)
Q Consensus 808 ~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l-~ 884 (1093)
+++|.+.+..|..++ .+.|..+++........+...-.....+|+.+.++++..+-+..+.|.+.++.... ...+ .
T Consensus 353 ~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~ 431 (619)
T 3s94_A 353 AIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILIS 431 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC
T ss_pred EEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEE
Confidence 899998777676665 57899998875444333443345677899986355566666667899999987543 3333 2
Q ss_pred cccCCeEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE--eCCeE
Q 001352 885 GHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHL 960 (1093)
Q Consensus 885 ~h~~~V~~l~~s~dg~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~i 960 (1093)
..-....++++.|....|..+. ....|...+++...... .. .... .....+++++++..|..+ ..+.|
T Consensus 432 ~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~--l~---~~~l---~~P~GlalD~~~~~LY~aD~~~~~I 503 (619)
T 3s94_A 432 EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV--LV---NTSL---GWPNGLALDYDEGKIYWGDAKTDKI 503 (619)
T ss_dssp TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EE---CSSC---SCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE--EE---eCCC---CCCeeeEEcccCCEEEEEECCCCEE
Confidence 3345688999999744444443 23567777776533211 11 1111 257789999988887775 44678
Q ss_pred EEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352 961 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus 961 ~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
..+++.... ...+....-....+++...+ .+.++-...+.|...+..+|
T Consensus 504 ~~~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 504 EVMNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp EEEESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred EEEecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 888886433 33332222222334555433 44444445567777777776
No 229
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.18 E-value=7e-09 Score=124.34 Aligned_cols=333 Identities=10% Similarity=0.051 Sum_probs=188.8
Q ss_pred cEEEEEecCCeEEEEEcCCCCceEEecCCCCc-----------eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352 501 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 569 (1093)
Q Consensus 501 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 569 (1093)
..++.++.++.|..+|..+++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEV 151 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 36777778889999999998888877654321 112233 4556666654 667999999999998
Q ss_pred eeeecc-ccc-CCCeEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCceEEEEecCCCC-----------------
Q 001352 570 RTYQGL-QLQ-HNSVSV-VHFDTAKDQILAAGD------DHVIKIWDMNKVQLLTTIDAGGGL----------------- 623 (1093)
Q Consensus 570 ~~~~~~-~~~-~~~v~~-v~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~----------------- 623 (1093)
-.+... ... ...+.+ ... .+..+++++. +|.|+.||..+|+.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 777654 100 011111 111 2345666543 799999999999999887653221
Q ss_pred -------------CCCceEEEecCCCEEEEEECCCe-------------------EEEEEcCCCceeeecccccccceee
Q 001352 624 -------------PENPRICFNKNGTLLAVIANENR-------------------IKILETPESNSVDAAGVLSDNLRKL 671 (1093)
Q Consensus 624 -------------~~v~~v~~s~~~~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~i~~~ 671 (1093)
.....++++|++.++++++.++. |..+|..+++.....+.....
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d---- 305 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGD---- 305 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC----
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCc----
Confidence 01135788998888888877653 555555555443332211000
Q ss_pred eecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCC---c
Q 001352 672 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG---Q 748 (1093)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g---~ 748 (1093)
.||.. ......-+....+| .
T Consensus 306 -----------------------------------------~wd~~----------------~~~~p~l~~~~~dG~~~~ 328 (677)
T 1kb0_A 306 -----------------------------------------NWDYT----------------STQPMILADIKIAGKPRK 328 (677)
T ss_dssp -----------------------------------------CSCCC----------------CCSCCEEEEEEETTEEEE
T ss_pred -----------------------------------------ccccc----------------cCCCcEEEecccCCcEee
Confidence 11110 00011111222345 4
Q ss_pred eEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceee----------ccCCCCCCCCCeeEEEEccCCCEE
Q 001352 749 AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV----------NDTTDSNSQEAVPCFALSKNDAYL 818 (1093)
Q Consensus 749 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~l~~s~dg~~l 818 (1093)
.++.++.+|.+.++|....+..............-+| .++..... ...++..-...-..++|+|++.++
T Consensus 329 ~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccccCcccccC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 5666666677766665444321110000000000011 11211110 001100001111367889988877
Q ss_pred EEEeC--------------------------------------------CeEEEEEccCceeEEEECCCCCCeEEEEEcC
Q 001352 819 FSASG--------------------------------------------GVISLYIVMTFKTILTIMPPSPTATSLAFNP 854 (1093)
Q Consensus 819 a~~~d--------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~ 854 (1093)
.+... |.|..||+.+++.+.++.. ...+....++.
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~ 486 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT 486 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEE
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEe
Confidence 76431 6799999999999888763 33344455666
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCcceeeeccccc-CCeEEEEEeCCCCEEEEE
Q 001352 855 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSS 905 (1093)
Q Consensus 855 ~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l~s~ 905 (1093)
++.++++++.||.+++||..+|+.+..+.... ....-+.|+.+|+.++..
T Consensus 487 -~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 487 -AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp -TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred -CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 56688889999999999999999998887432 233346677888765543
No 230
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.18 E-value=4.2e-10 Score=122.68 Aligned_cols=177 Identities=12% Similarity=0.041 Sum_probs=133.3
Q ss_pred CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCc--------ccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEE
Q 001352 398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 469 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~--------~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~ 469 (1093)
.+++.+++++...++++|+.++ +++|++..... .... ....+.. |+.++| |++ +|+++ .++.|+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~ 109 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALY 109 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEE
Confidence 3789999999999999999986 77799764320 1111 1224666 999999 888 67777 789999
Q ss_pred EEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEe
Q 001352 470 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 549 (1093)
Q Consensus 470 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 549 (1093)
+||+.+.........|..++.++.+.+. .+++++.||.|.+||+....... ....|++++|||+| ++.+.
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEE
T ss_pred EEEchhhhccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEE
Confidence 9999887776677778888888776432 28889999999999998776543 33589999999999 45555
Q ss_pred cCCCCceeEEEEeCCCCee--eeeeecc------cccCCCeEEEEEcCCCCEEEE
Q 001352 550 TSKEGESFLVEWNESEGAI--KRTYQGL------QLQHNSVSVVHFDTAKDQILA 596 (1093)
Q Consensus 550 ~~~~~~~~i~iwd~~~~~~--~~~~~~~------~~~~~~v~~v~~~~~~~~l~~ 596 (1093)
. ++.+++|+...+.. .+++... ..+...|.++.|.+++.++++
T Consensus 180 ~----dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 180 K----DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp T----TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred c----CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 4 56699999888775 5555211 112478999999999888776
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.17 E-value=1e-08 Score=123.29 Aligned_cols=383 Identities=10% Similarity=0.101 Sum_probs=216.0
Q ss_pred EEEEEcCCCcEEEEECCCCceeEEeecCCCC----------e-EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001352 458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 526 (1093)
Q Consensus 458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~----------v-~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 526 (1093)
.++.++.++.|..+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|..+++.+..+
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 4667777889999999999999887543221 0 11111 2347888999999999999999988776
Q ss_pred cCC-C-CceEEEEEcc---CCCEEEEEecCC--CCceeEEEEeCCCCeeeeeeeccc-----------------------
Q 001352 527 DAP-G-LGCTRMAYSA---NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQ----------------------- 576 (1093)
Q Consensus 527 ~~~-~-~~v~~~~~s~---d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~----------------------- 576 (1093)
... . .....+..+| ++. ++++.... ..++.|+.||..+|+.+-.+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 553 1 1111111122 444 44443211 136789999999999876664211
Q ss_pred -----ccCCCeEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceEEEEecCCCC-------CC
Q 001352 577 -----LQHNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PE 625 (1093)
Q Consensus 577 -----~~~~~v~~v~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~ 625 (1093)
........++++|++..++.++.++. |..||..+|+.+..+....+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 00011135788898899999887764 999999999999887653221 01
Q ss_pred CceEEEecCCC---EEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccc
Q 001352 626 NPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 702 (1093)
Q Consensus 626 v~~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l 702 (1093)
........+|+ .++.++.+|.++++|..+++.+......... ....+.+ .. +.-+
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~~~---------~~------------~~pi 364 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS-WTKGMDM---------KT------------GRPI 364 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEEET---------TT------------TEEE
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc-cccccCc---------cC------------CCcc
Confidence 11112223565 7888999999999999999877543321100 0000000 00 0000
Q ss_pred eeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCc
Q 001352 703 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 782 (1093)
Q Consensus 703 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 782 (1093)
... .. .|.. +.....+..|.......-..++|+|+...+++...+....++......
T Consensus 365 ~~~----~~-~~~~----~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~-------------- 421 (689)
T 1yiq_A 365 LDE----EN-AAYW----KNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP-------------- 421 (689)
T ss_dssp ECH----HH-HCTT----TSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC--------------
T ss_pred cch----hh-cccc----CCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc--------------
Confidence 000 00 0000 000011122222223334458999998888887776544443221100
Q ss_pred ccCCCCCCceeeccCCCCCCCCCeeEEEEccC---CCEEEEE-eCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCC
Q 001352 783 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN---DAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 858 (1093)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d---g~~la~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~ 858 (1093)
.|....+. . ..... +...|. +...... .+|.|..||+.+|+.+.++..+.. ...-.++. .+.
T Consensus 422 ~~~~~~~~-~---------~~g~~--~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agg 487 (689)
T 1yiq_A 422 KRNPFKSM-Y---------QLGLR--TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGN 487 (689)
T ss_dssp CCCSCTTS-C---------CCSSE--ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTT
T ss_pred cccccccc-c---------ccCcc--ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceE-CCC
Confidence 01111000 0 00000 000000 0000000 137899999999999888764432 23334555 566
Q ss_pred EEEEEeCCCeEEEEEcCCcceeeecccccCC-eEEEEEeCCCCEEEE
Q 001352 859 VIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 904 (1093)
Q Consensus 859 ~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l~s 904 (1093)
++++|+.||.++.||.++|+.+.+++...+. ..-+.|+.||+..+.
T Consensus 488 lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 488 LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 8899999999999999999999888754332 234677888875443
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.17 E-value=6.4e-09 Score=124.94 Aligned_cols=167 Identities=16% Similarity=0.185 Sum_probs=116.7
Q ss_pred EEEEcCCCCCEEEEEeCCCe-------------------EEEEEcCCcceeeeccc--cc-------CCeEEEEEeCCCC
Q 001352 849 SLAFNPHDNNVIAIGMDDST-------------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN 900 (1093)
Q Consensus 849 ~l~~s~~d~~~lasg~~dg~-------------------i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~ 900 (1093)
.++++| +..++++++.++. |..+|..+|+.+..++. |. .++.......+|+
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 578888 7778888888764 99999999999887654 32 1222223333665
Q ss_pred ---EEEEEeCCCcEEEEeCCCCceeeeeeeec------------------------CCCc-----cc--CCCCceEEEEc
Q 001352 901 ---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT------------------------PDGV-----MT--LAPSETHIQFH 946 (1093)
Q Consensus 901 ---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------------------------~~~~-----~~--~~~~v~~~~~s 946 (1093)
.++.++.+|.++++|..+++......... ..+. .. -...-..++|+
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78899999999999999988652111100 0000 00 00012347999
Q ss_pred cCCCEEEEE-e---------------------------------------------CCeEEEEEcCCcceeeeeecCCCC
Q 001352 947 KDQTRFLLV-H---------------------------------------------ETHLAIYEAEELTCLKQWFPISSV 980 (1093)
Q Consensus 947 ~dg~~l~~~-~---------------------------------------------d~~i~vwd~~~~~~~~~~~~~h~~ 980 (1093)
|+..++.+. . ++.|..||+.+|+.+-+... ..
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~ 475 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--VT 475 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--SS
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--CC
Confidence 998888763 1 36799999999998776443 23
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352 981 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 981 ~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
++....++..|.++++++.||.++.||..+|+.+.++.
T Consensus 476 ~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 476 IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 33444667788899999999999999999999998887
No 233
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.16 E-value=8.2e-08 Score=107.24 Aligned_cols=152 Identities=15% Similarity=0.061 Sum_probs=99.9
Q ss_pred EEEEEcCCCcEEEEECCCCceeEEeecCC---------CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecC
Q 001352 458 SVITCGDDKTIKVWDAVTGSRTYSFEGHG---------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 528 (1093)
Q Consensus 458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 528 (1093)
.++.++.++.|..+|..+|+.+....... ..+.+.. ..++..++.++.++.|..+|..+++.......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV---TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE---EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc---eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 57778888999999999999987765421 2222211 11335788889999999999999988876655
Q ss_pred CCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccC--CCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001352 529 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIW 606 (1093)
Q Consensus 529 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~v~~~~~~~~l~~~~~dg~i~iw 606 (1093)
........... + ..+++++. ++.|+.+|..+|+.+-.+....... ......... +..+++++.++.+..+
T Consensus 132 ~~~~~~~p~~~-~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~ 203 (376)
T 3q7m_A 132 AGEALSRPVVS-D-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAV 203 (376)
T ss_dssp SSCCCSCCEEE-T-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEE
T ss_pred CCceEcCCEEE-C-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEE
Confidence 43322222222 3 35555543 5679999999998877665432000 000111222 4578888889999999
Q ss_pred ECCCCceEEEEecC
Q 001352 607 DMNKVQLLTTIDAG 620 (1093)
Q Consensus 607 d~~~~~~~~~~~~~ 620 (1093)
|..+|+.+......
T Consensus 204 d~~tG~~~w~~~~~ 217 (376)
T 3q7m_A 204 LMEQGQMIWQQRIS 217 (376)
T ss_dssp ETTTCCEEEEEECC
T ss_pred ECCCCcEEEEEecc
Confidence 99999988776643
No 234
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.16 E-value=1.3e-08 Score=110.85 Aligned_cols=225 Identities=9% Similarity=-0.008 Sum_probs=145.0
Q ss_pred eEEEEeecCCceEE-EeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCC
Q 001352 738 ISRLTYNNGGQAIF-ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 816 (1093)
Q Consensus 738 i~~l~~s~~g~~l~-~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 816 (1093)
..+.+|++++..++ +...++.+..|+.... . ..... ....+.+++++++|+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~v~~i~~~~dg~ 102 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASG----------------------R-KTVHA-----LPFMGSALAKISDSK 102 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTT----------------------E-EEEEE-----CSSCEEEEEEEETTE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEE-----CCCcceEEEEeCCCe
Confidence 45678999755444 4445677777764322 1 11111 234688999999999
Q ss_pred EEEEEeCCeEEEEEccCceeEEEECCC----CCCeEEEEEcCCCCCEEEEEeC------CCeEEEEEcCCcceeeecccc
Q 001352 817 YLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMD------DSTILIYNARSSEVISKLEGH 886 (1093)
Q Consensus 817 ~la~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~------dg~i~iwd~~~~~~~~~l~~h 886 (1093)
++++. ++.|.+||..+++........ ...+..++++| +++++++... .+.|..++ +++.. .+..+
T Consensus 103 l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~ 177 (326)
T 2ghs_A 103 QLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD 177 (326)
T ss_dssp EEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE
T ss_pred EEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC
Confidence 88765 555999999888754333211 23578999999 7887665432 24566666 45443 33334
Q ss_pred cCCeEEEEEeCCCCEEEEE-eCCCcEEEEeCC--CC-ceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEE
Q 001352 887 SKRVTGLVFSDALNILVSS-GGDAQIFVWDVD--GW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 961 (1093)
Q Consensus 887 ~~~V~~l~~s~dg~~l~s~-s~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~ 961 (1093)
......++|+|||+.|+.+ +.++.|.+|++. ++ +......+....... ..+..++++++|.+.++. .++.|.
T Consensus 178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~ 254 (326)
T 2ghs_A 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVD 254 (326)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEE
T ss_pred CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEE
Confidence 4457789999999876554 457889999986 54 322212222221111 235689999999987775 467899
Q ss_pred EEEcCCcceeeeeecCCCCCEEEEEEc-cCCCEEEEEeCC
Q 001352 962 IYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD 1000 (1093)
Q Consensus 962 vwd~~~~~~~~~~~~~h~~~v~~~~fs-~dg~~l~t~~~d 1000 (1093)
+||. +++.+..+. .+...+++++|+ +|++.|++++..
T Consensus 255 ~~d~-~g~~~~~i~-~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 255 RYDT-DGNHIARYE-VPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECT-TCCEEEEEE-CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EECC-CCCEEEEEE-CCCCCcEEEEEecCCCCEEEEEecC
Confidence 9998 566665543 345579999998 898877655543
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.15 E-value=9.6e-09 Score=110.91 Aligned_cols=231 Identities=14% Similarity=0.077 Sum_probs=151.6
Q ss_pred CCCCeEEEEECCCCC-EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC
Q 001352 396 PGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 474 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 474 (1093)
........+|+|+|+ ++++...++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+|+..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECCC
Confidence 445677899999999 5566667789999998 443 22 3445667789999999998 66666666789999975
Q ss_pred CCceeEEeecC----CCCeEEeeecccCCccEEEE----Eec-------------CCeEEEEEcCCCCceEEecCCCCce
Q 001352 475 TGSRTYSFEGH----GAPVYSLCPHAKENIHFIFS----ISV-------------DGKIKAWLYDSLGARVDYDAPGLGC 533 (1093)
Q Consensus 475 ~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~v 533 (1093)
|+........ ...++.+++. ++|.+.++ |.. .+.|..+|..+++..... .....
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred -CCEEEEEeccCCCccCCCCCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 6543222111 1235567774 46677775 321 245667776555544332 33456
Q ss_pred EEEEEccCCCEEEEEecCC--CCceeEEEEeCCCCeee--eeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001352 534 TRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 609 (1093)
Q Consensus 534 ~~~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~ 609 (1093)
..++|+||++.|+++.... .+...|+.|++..+... ..+... .......++++++|+ +.++..+ .|.+|+.
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~- 265 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS- 265 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSC-EEECCSS-EEEEECT-
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCC-EEEecCC-cEEEECC-
Confidence 7899999999887765421 01256999998765411 111111 123456788999998 4444444 4999998
Q ss_pred CCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCe
Q 001352 610 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 646 (1093)
Q Consensus 610 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 646 (1093)
.++.+..+.... .+.+++|+++++.|++++.++.
T Consensus 266 ~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence 577777776553 3789999999999998887643
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.13 E-value=6.2e-08 Score=105.30 Aligned_cols=233 Identities=14% Similarity=0.089 Sum_probs=151.0
Q ss_pred EEc--cCCCEEEEEe--CCeEEEEEccCc----eeEEEEC-------CCCCCeEEEEEcCCCCCEEEEEeCC------Ce
Q 001352 810 ALS--KNDAYLFSAS--GGVISLYIVMTF----KTILTIM-------PPSPTATSLAFNPHDNNVIAIGMDD------ST 868 (1093)
Q Consensus 810 ~~s--~dg~~la~~~--dg~i~iwd~~~~----~~~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~d------g~ 868 (1093)
.++ +++++|.+.+ +++|.++|+.+. +..+++. ........+.++| ++ +++++..+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 346 8899998887 588999999765 6666663 1112456788999 78 66665555 78
Q ss_pred EEEEEcCCcceeeecccccC---CeEEEEEeCCCCEEEEEe-------------------CCCcEEEEeCCCCceeeeee
Q 001352 869 ILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRS 926 (1093)
Q Consensus 869 i~iwd~~~~~~~~~l~~h~~---~V~~l~~s~dg~~l~s~s-------------------~dg~i~iwd~~~~~~~~~~~ 926 (1093)
|.++|..+++.+.++..-.+ --..+.|+|+++.+++.. .+.+|.+||+.+++... .
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence 99999999999988873222 234588999999999884 36789999999864333 2
Q ss_pred eecCCCcccCCCCceEEEE--ccCCCEEEEE-------eCCeEEEEEcCCcceeeee----ec----C-----------C
Q 001352 927 LQTPDGVMTLAPSETHIQF--HKDQTRFLLV-------HETHLAIYEAEELTCLKQW----FP----I-----------S 978 (1093)
Q Consensus 927 ~~~~~~~~~~~~~v~~~~~--s~dg~~l~~~-------~d~~i~vwd~~~~~~~~~~----~~----~-----------h 978 (1093)
+....... ....+.| +|+++++.++ -+++|.+|....|+..... .. + -
T Consensus 244 I~vg~~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGEENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCTTEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCCCCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 33321111 2445555 9999998873 3357877666544321110 00 0 0
Q ss_pred CCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCC---CceEEEeccccccCCCCC----CCccceeEEEeCCCCCCEEEEE
Q 001352 979 SVPISQATFSCDCRMVFTSFV-DGTLSIHEASN---LEVQCRILSTAYLRPTTS----CLHVYPHAIAAHPLKPTQFAVG 1050 (1093)
Q Consensus 979 ~~~v~~~~fs~dg~~l~t~~~-dg~v~vwd~~~---~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~p~d~~~l~~~ 1050 (1093)
......+.+|+||++|.++.. .+.|.++|+.. .+++..+..........| .....|-.+.++| ||++|.++
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVa 398 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVT 398 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEE
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEE
Confidence 235778999999999887765 57899999863 345545442211000000 0011466789999 58888888
Q ss_pred e
Q 001352 1051 L 1051 (1093)
Q Consensus 1051 ~ 1051 (1093)
.
T Consensus 399 N 399 (462)
T 2ece_A 399 N 399 (462)
T ss_dssp C
T ss_pred c
Confidence 8
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.13 E-value=6.5e-08 Score=108.03 Aligned_cols=277 Identities=10% Similarity=0.033 Sum_probs=172.1
Q ss_pred EEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCC
Q 001352 351 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 430 (1093)
Q Consensus 351 lasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~ 430 (1093)
+.+++.++.|..+|..+|+.+-...+.. .. . ........+.+. ...++..+++++.++.|..+|..+|+
T Consensus 56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~-------~~-~--~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~ 124 (376)
T 3q7m_A 56 VYAADRAGLVKALNADDGKEIWSVSLAE-------KD-G--WFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGT 124 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC-------------CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCeEEEEEccCCceeeeecCcc-------cc-c--cccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCC
Confidence 6667788999999999999875433210 00 0 000001222221 12246678888899999999999997
Q ss_pred cccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCe-----EEeeecccCCccEEEE
Q 001352 431 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----YSLCPHAKENIHFIFS 505 (1093)
Q Consensus 431 ~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~~~~l~s 505 (1093)
.+.. .............. ++ .++.++.++.|..+|..+|+.+.......... ..... .+..++.
T Consensus 125 ~~W~---~~~~~~~~~~p~~~-~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~~~v~~ 193 (376)
T 3q7m_A 125 VAWQ---TKVAGEALSRPVVS-DG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT----AFGAAVV 193 (376)
T ss_dssp EEEE---EECSSCCCSCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE----ETTEEEE
T ss_pred EEEE---EeCCCceEcCCEEE-CC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE----ECCEEEE
Confidence 5442 22221111112222 33 47778889999999999999988775432211 11111 1246788
Q ss_pred EecCCeEEEEEcCCCCceEEecCCCCc----eE---EEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc
Q 001352 506 ISVDGKIKAWLYDSLGARVDYDAPGLG----CT---RMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 576 (1093)
Q Consensus 506 ~~~dg~i~vwd~~~~~~~~~~~~~~~~----v~---~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 576 (1093)
++.+|.+..+|..+++........... +. .+...| .+..+++++. ++.+..+|..+|+.+-....
T Consensus 194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~----~g~l~~~d~~tG~~~w~~~~-- 267 (376)
T 3q7m_A 194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY----NGNLTALDLRSGQIMWKREL-- 267 (376)
T ss_dssp CCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT----TSCEEEEETTTCCEEEEECC--
T ss_pred EcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec----CcEEEEEECCCCcEEeeccC--
Confidence 888999999999988887765533210 00 000111 2445555543 45699999999987755542
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCc
Q 001352 577 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 656 (1093)
Q Consensus 577 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 656 (1093)
.....+.. ++..+++++.++.|..+|..+++.+........ ........ .+..+++++.+|.+.++|..+++
T Consensus 268 ---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 268 ---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp ---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECTTSEEEEEETTTCC
T ss_pred ---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeCCCeEEEEECCCCc
Confidence 22334433 467888899999999999999998877652211 11223333 25678889999999999999987
Q ss_pred eeeeccc
Q 001352 657 SVDAAGV 663 (1093)
Q Consensus 657 ~~~~~~~ 663 (1093)
.+.....
T Consensus 340 ~~~~~~~ 346 (376)
T 3q7m_A 340 FVAQQKV 346 (376)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 7665543
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.11 E-value=1.1e-08 Score=111.05 Aligned_cols=240 Identities=12% Similarity=0.069 Sum_probs=154.3
Q ss_pred eeec--CCCceEEEEEccCCcEEEEecCCC--ceeEEeeeeeeecccccceeeeeee-cCCCCCeEEEEECCCCCEEEEE
Q 001352 341 MDFH--PVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALV-RDPGVSVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 341 ~~~s--pdg~~llasg~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~s~dg~~las~ 415 (1093)
..++ +++++|++.|..+++|.|+|+.+. +......++.-++ . +........+..+||| .++++
T Consensus 87 ~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~-----------~~~~g~s~Ph~~~~~pdG-i~Vs~ 154 (462)
T 2ece_A 87 PNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEV-----------KKVSGYSRLHTVHCGPDA-IYISA 154 (462)
T ss_dssp TTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHH-----------HHHHCEEEEEEEEECSSC-EEEEE
T ss_pred cccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhc-----------ccccCCCcccceeECCCe-EEEEc
Confidence 3557 999999999999999999999754 2221111100000 0 0011234567889999 66666
Q ss_pred EcC------CEEEEEEccCCCcccceEEecccc-ccEEEEEeeCCCCcEEEEEEc-------------------CCCcEE
Q 001352 416 YSK------HIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG-------------------DDKTIK 469 (1093)
Q Consensus 416 ~~d------~~i~iwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~d~~~l~l~s~~-------------------~d~~i~ 469 (1093)
..+ +.|.+.|.++++.+.... ..+.. .--..+.|+|+++ .+++.. .+.+|.
T Consensus 155 ~g~~~g~~~g~v~vlD~~T~~v~~~~~-~~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~ 231 (462)
T 2ece_A 155 LGNEEGEGPGGILMLDHYSFEPLGKWE-IDRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIH 231 (462)
T ss_dssp EEETTSCSCCEEEEECTTTCCEEEECC-SBCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEE
T ss_pred CCCcCCCCCCeEEEEECCCCeEEEEEc-cCCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEE
Confidence 555 789999999987665331 11222 2234588899999 677764 468999
Q ss_pred EEECCCCceeEEeecC-C-CCeEEeeecccCCccEEEEEe------cCCeEEEEEcCCCCce--EE--ecCC--------
Q 001352 470 VWDAVTGSRTYSFEGH-G-APVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGAR--VD--YDAP-------- 529 (1093)
Q Consensus 470 vwd~~~~~~~~~~~~h-~-~~v~~~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~--~~--~~~~-------- 529 (1093)
+||+.+++.+.++... . .....+.|..++++++++.++ .+++|.+|..+.+.-. .. +...
T Consensus 232 v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~ 311 (462)
T 2ece_A 232 FWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPE 311 (462)
T ss_dssp EEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCG
T ss_pred EEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccc
Confidence 9999999888888653 1 234456665577778877776 4568887766542211 11 1110
Q ss_pred --------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC---Ceeeeeeeccc-----------ccCCCeEEEEE
Q 001352 530 --------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQ-----------LQHNSVSVVHF 587 (1093)
Q Consensus 530 --------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~-----------~~~~~v~~v~~ 587 (1093)
......+.+|+||++|+++.. +.+.|.+||+.. .+.+..+.... .-.+....+.+
T Consensus 312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~l 388 (462)
T 2ece_A 312 ILKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEI 388 (462)
T ss_dssp GGGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEE
T ss_pred cccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEE
Confidence 234678999999999998875 356799999853 34444443210 00013578899
Q ss_pred cCCCCEEEEEe
Q 001352 588 DTAKDQILAAG 598 (1093)
Q Consensus 588 ~~~~~~l~~~~ 598 (1093)
+|||++++++.
T Consensus 389 SpDGk~LyVaN 399 (462)
T 2ece_A 389 SRDGRRVYVTN 399 (462)
T ss_dssp CTTSSEEEEEC
T ss_pred cCCCCEEEEEc
Confidence 99999999876
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.09 E-value=6.8e-09 Score=117.01 Aligned_cols=345 Identities=11% Similarity=0.031 Sum_probs=202.7
Q ss_pred cEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEe----------cCCe-EEEEEcCCCCceE
Q 001352 456 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGK-IKAWLYDSLGARV 524 (1093)
Q Consensus 456 ~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~-i~vwd~~~~~~~~ 524 (1093)
+..+.||+..|.++|+-+.+++.++.+...+..-. .-|-.++....++..+ .+|. ...|
T Consensus 15 ~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~-~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~--------- 84 (595)
T 1fwx_A 15 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAANGKRIHDN--------- 84 (595)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCC---------
T ss_pred EEEEeeCCcCceEEEEecCCcceEEEeeeecCCCC-cccCCchhHHHHHhccCCccchhhhhccCceeccc---------
Confidence 34688999999999999999999998863221000 0000000000011000 0110 0000
Q ss_pred EecCCCCceEEEEE---ccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEE-c-CCCCEEEEEe-
Q 001352 525 DYDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAG- 598 (1093)
Q Consensus 525 ~~~~~~~~v~~~~~---s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~-~-~~~~~l~~~~- 598 (1093)
....-..+++ .+||++++++.. .+..|.+.|+.+.+..+.+.-.. ......+++ + |+++++++++
T Consensus 85 ----gd~hh~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~ 155 (595)
T 1fwx_A 85 ----GDLHHVHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGE 155 (595)
T ss_dssp ----CCBCCEEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEEC
T ss_pred ----CCCCccccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEecc
Confidence 0001122333 348999998754 25679999999999888664322 245778887 5 9999999985
Q ss_pred -----------------CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeec
Q 001352 599 -----------------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 661 (1093)
Q Consensus 599 -----------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 661 (1093)
.++.+.++|..+.+...++...+. ...++++|+|+++++.+.+... ...+...
T Consensus 156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~~~i~~~ 225 (595)
T 1fwx_A 156 DETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------GMTLPEM 225 (595)
T ss_dssp SCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------CSSHHHH
T ss_pred cccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------Ccchhhc
Confidence 345799999999999998886542 4678999999999998875321 0000000
Q ss_pred ccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEE
Q 001352 662 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL 741 (1093)
Q Consensus 662 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l 741 (1093)
.. ..-..+.+.+.....
T Consensus 226 ~~------------------------------------------~~~d~v~V~~~~~~~--------------------- 242 (595)
T 1fwx_A 226 TA------------------------------------------AEMDHIVVFNIAEIE--------------------- 242 (595)
T ss_dssp TC------------------------------------------CSEEEEEEEEHHHHH---------------------
T ss_pred cc------------------------------------------cccceEEEeecccee---------------------
Confidence 00 000111122211000
Q ss_pred EeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCc-eeeccCCCCCCCCCeeEEEEccCCCEEEE
Q 001352 742 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFS 820 (1093)
Q Consensus 742 ~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 820 (1093)
.+.++|+.... +.+.+.|....+ +.. ..... -.....++.++|||+++++
T Consensus 243 ~~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V 293 (595)
T 1fwx_A 243 KAIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP-----IANNPHGCNMAPDKKHLCV 293 (595)
T ss_dssp HHHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE-----EESSCCCEEECTTSSEEEE
T ss_pred EeccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe-----cCCCceEEEEcCCCCEEEE
Confidence 01223332221 335555543210 111 11111 1224457999999999999
Q ss_pred Ee--CCeEEEEEccCce------------eEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------
Q 001352 821 AS--GGVISLYIVMTFK------------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------- 876 (1093)
Q Consensus 821 ~~--dg~i~iwd~~~~~------------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~---------- 876 (1093)
++ +++|.++|+.+.+ ...... -......++|+| +|...++...|+.|.+||+.+
T Consensus 294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~ 371 (595)
T 1fwx_A 294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKV 371 (595)
T ss_dssp ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSC
T ss_pred eCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhccccc
Confidence 87 5889999999763 233332 345678999999 776556677899999999987
Q ss_pred cceeeecccccCCe-----EEEEEeCCCCEEEEEeC---CCc----------EEEEeCCCCceee
Q 001352 877 SEVISKLEGHSKRV-----TGLVFSDALNILVSSGG---DAQ----------IFVWDVDGWGIQT 923 (1093)
Q Consensus 877 ~~~~~~l~~h~~~V-----~~l~~s~dg~~l~s~s~---dg~----------i~iwd~~~~~~~~ 923 (1093)
.+.+.++..|-.+- .++.++|||++|+++.. |+. -.++|+++++...
T Consensus 372 ~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 372 DPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp CCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred ceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence 45566666554321 22356899999998753 553 2889997766433
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.06 E-value=4.1e-09 Score=115.52 Aligned_cols=293 Identities=12% Similarity=0.032 Sum_probs=179.6
Q ss_pred EEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCC
Q 001352 502 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 581 (1093)
Q Consensus 502 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 581 (1093)
.+..++.++.|..|| .+++...........+.++...++|...+ ++ .. |..+|. +++.+..+.... ..
T Consensus 32 ~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t-----~~-l~~~d~-~g~~~~~~~~~~---~~ 99 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYF-GS-----DK-VYAINP-DGTEKWRFDTKK---AI 99 (330)
T ss_dssp CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECC-SS-----CE-EEEECC-CGGGGGGSCC-------
T ss_pred eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEE-ec-----Cc-EEEECC-CCcEEEEEECCC---Cc
Confidence 567777888888998 66665554444444456677777776444 33 33 888886 666554443322 22
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeec
Q 001352 582 VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 661 (1093)
Q Consensus 582 v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 661 (1093)
.....+. +..+++++.++.|..+|.. ++......... ..+.++...+++. +.+++.++.+..++.. +......
T Consensus 100 ~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~ 172 (330)
T 3hxj_A 100 VSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKK--AIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRF 172 (330)
T ss_dssp -CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEE
T ss_pred ccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCC--ceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEE
Confidence 2222333 5678888889999999998 77776665443 2356677777776 5567778899999877 5433322
Q ss_pred ccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEE
Q 001352 662 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL 741 (1093)
Q Consensus 662 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l 741 (1093)
..... .+.++
T Consensus 173 ~~~~~----------------------------------------------------------------------~~~~~ 182 (330)
T 3hxj_A 173 KTNDA----------------------------------------------------------------------ITSAA 182 (330)
T ss_dssp ECSSC----------------------------------------------------------------------CCSCC
T ss_pred ecCCC----------------------------------------------------------------------ceeee
Confidence 21100 11223
Q ss_pred EeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE
Q 001352 742 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 821 (1093)
Q Consensus 742 ~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~ 821 (1093)
.+.+++... +++ +.+..++ .. +........ ....+.++++.++|.+.+..
T Consensus 183 ~~d~~g~l~-v~t--~~l~~~d-~~----------------------g~~~~~~~~----~~~~~~~~~~~~~g~l~v~t 232 (330)
T 3hxj_A 183 SIGKDGTIY-FGS--DKVYAIN-PD----------------------GTEKWNFYA----GYWTVTRPAISEDGTIYVTS 232 (330)
T ss_dssp EECTTCCEE-EES--SSEEEEC-TT----------------------SCEEEEECC----SSCCCSCCEECTTSCEEEEE
T ss_pred EEcCCCEEE-EEe--CEEEEEC-CC----------------------CcEEEEEcc----CCcceeceEECCCCeEEEEc
Confidence 334455533 333 4455444 11 111111111 23456778888888877766
Q ss_pred eCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCE
Q 001352 822 SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI 901 (1093)
Q Consensus 822 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~ 901 (1093)
.++.+..++. +++.+..+......+.++.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|++
T Consensus 233 ~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l 308 (330)
T 3hxj_A 233 LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI 308 (330)
T ss_dssp TTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE
T ss_pred CCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE
Confidence 6788888874 5666666655544455566665 55 5666888989999996 67777666555566777888778765
Q ss_pred EEEEeCCCcEEEEeCCC
Q 001352 902 LVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 902 l~s~s~dg~i~iwd~~~ 918 (1093)
..++.+|.+++.....
T Consensus 309 -~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 309 -YFGTRNGKFYALFNLE 324 (330)
T ss_dssp -EEECTTSCEEEEEC--
T ss_pred -EEEcCCCeEEEEeccc
Confidence 4578899998887765
No 241
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.04 E-value=1e-08 Score=112.37 Aligned_cols=269 Identities=12% Similarity=0.059 Sum_probs=173.7
Q ss_pred eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC
Q 001352 339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 418 (1093)
Q Consensus 339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d 418 (1093)
....+..+|. +..|+.++.|..|| .+|+.+... ..+...+.++...++|.+.+ ++.+
T Consensus 23 ~~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~~-------------------~~~~~~~~~~~~~~~g~l~v-~t~~ 79 (330)
T 3hxj_A 23 SSPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWFF-------------------KSGEIIECRPSIGKDGTIYF-GSDK 79 (330)
T ss_dssp CCCEECTTSC--EECSSTTTTTEEEC-TTSCEEESS-------------------CGGGEEEECCEETTTTEECC-SSCE
T ss_pred cCceEccCCe--EEEEcCCCEEEEEC-CCCcEEEEE-------------------ecCCCcccceEEecCCcEEE-ecCc
Confidence 4556667776 56667788999999 888865431 11334457777777776444 4444
Q ss_pred CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccC
Q 001352 419 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 498 (1093)
Q Consensus 419 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 498 (1093)
|..+|. +++.+... ...........+. ++ .+..++.++.|..+|.. |+.......+...+.++.. .+
T Consensus 80 --l~~~d~-~g~~~~~~---~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~ 146 (330)
T 3hxj_A 80 --VYAINP-DGTEKWRF---DTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SE 146 (330)
T ss_dssp --EEEECC-CGGGGGGS---CC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CT
T ss_pred --EEEECC-CCcEEEEE---ECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cC
Confidence 888886 55543322 1122222333333 44 46778888999999988 8877777655555555554 32
Q ss_pred CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccccc
Q 001352 499 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 578 (1093)
Q Consensus 499 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 578 (1093)
++ .++.++.++.|..+|.. +.....+......+.++.+.+++...+.. +.|..+| .+++....+....
T Consensus 147 ~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~-- 214 (330)
T 3hxj_A 147 DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGY-- 214 (330)
T ss_dssp TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSS--
T ss_pred CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCC--
Confidence 43 47778888999999988 66666666556667778888888866554 2299999 7776665555433
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCcee
Q 001352 579 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 658 (1093)
Q Consensus 579 ~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 658 (1093)
..+.++...+++ .+.+++.++.+..+|. +++.+..+..... .+..+.+.+++ .|.+++.+|.+..++. +++..
T Consensus 215 -~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 215 -WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp -CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred -cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence 567778888776 5666777888999974 5666666654332 24456666555 5667888888999986 55544
Q ss_pred eecc
Q 001352 659 DAAG 662 (1093)
Q Consensus 659 ~~~~ 662 (1093)
....
T Consensus 288 ~~~~ 291 (330)
T 3hxj_A 288 WNFE 291 (330)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
No 242
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=99.02 E-value=0.00023 Score=89.59 Aligned_cols=619 Identities=10% Similarity=0.042 Sum_probs=308.5
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC----CCEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLL 412 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d----g~~l 412 (1093)
.-+++++-.+| ++..|+..|.=.+|.+.....-....+.+- + --..-++|..++.-.. ...|
T Consensus 328 ~~ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~---------~---~~~N~~PI~D~~v~d~~~~~~~~i 393 (1158)
T 3ei3_A 328 IAECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAM---------E---TFTNLGPIVDMCVVDLERQGQGQL 393 (1158)
T ss_dssp CCSEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEE---------E---EECCCCSEEEEEEECTTSSSCCEE
T ss_pred CccEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeE---------e---eecCcCCceeEEEEccCCCCCCeE
Confidence 33566666677 478888877777777764321000000000 0 1113467777776431 2356
Q ss_pred EEEE---cCCEEEEEEccCCCcccceEEeccccccEEEEEeeC---CCCcEEEEEEcCCCcEEEEECCCCceeEEee--c
Q 001352 413 GVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFE--G 484 (1093)
Q Consensus 413 as~~---~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~--~ 484 (1093)
++++ .+|.+++..-.-+-.......+.+ -..++.+.... ... +|+.+..+.+ .|+.+. ++.+..+. +
T Consensus 394 ~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~g 468 (1158)
T 3ei3_A 394 VTCSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELMG 468 (1158)
T ss_dssp EEEECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCTT
T ss_pred EEEECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCccccccccc
Confidence 5554 467888875443211111112332 24566665432 233 5665555555 455442 22333321 1
Q ss_pred CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC-CceEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001352 485 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 563 (1093)
Q Consensus 485 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 563 (1093)
.......++...-+++ .++=.. ...|++.+.........+..+. ..|...+.+. .+++.+. .+.+..+++
T Consensus 469 f~~~~~TL~~~~l~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel 539 (1158)
T 3ei3_A 469 FVDDQQTFFCGNVAHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQI 539 (1158)
T ss_dssp CCSSSCEEEEEEETTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEE
T ss_pred ccCCCCcEEEEEcCCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEe
Confidence 1111111111111111 222222 2335666655444555555443 3566666543 4565553 123667777
Q ss_pred CCCeeeeeeecccccCCCeEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCceEEEEecCCCCCCCceEEEe--cC
Q 001352 564 SEGAIKRTYQGLQLQHNSVSVVHFDTA------KDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN--KN 634 (1093)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~v~~v~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--~~ 634 (1093)
..++...... .. -...|.|+++.|. +.++++|.. |++++|+++.+.+.+........ ....++.+. ..
T Consensus 540 ~~~~L~~~~~-~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~ 616 (1158)
T 3ei3_A 540 HPQELRQISH-TE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFES 616 (1158)
T ss_dssp ETTEEEEEEE-EE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETT
T ss_pred eCCceeeecc-cC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCC
Confidence 6654332211 11 2367999998864 368888886 99999999998777665554321 123344433 23
Q ss_pred CCEEEEEECCCeEEEEEcC--CCceeee--cccccccceeeeec----------CCCceeeeeccCCceE----------
Q 001352 635 GTLLAVIANENRIKILETP--ESNSVDA--AGVLSDNLRKLSVN----------PISTVTGAGIANGSVS---------- 690 (1093)
Q Consensus 635 ~~~l~~~~~dg~i~iw~~~--~~~~~~~--~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~---------- 690 (1093)
..+|.+|-.||.+.-+.+. ++..... ..-...++.-..+. ...+.+... ..+.+.
T Consensus 617 ~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~-~~~~l~~s~l~~~~v~ 695 (1158)
T 3ei3_A 617 SHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYS-SNHKLVFSNVNLKEVN 695 (1158)
T ss_dssp EEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEE-SSSSEEEEEBSSSCCC
T ss_pred CcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEE-cCCceEEeccChHHhc
Confidence 4678899999998766654 3322211 00001111111111 111111111 111111
Q ss_pred ----ecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecC
Q 001352 691 ----VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 766 (1093)
Q Consensus 691 ----~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~ 766 (1093)
|+....|+| ++ +..++.+++..++.........+ | -...+..++++|+.+.++.+..+... ++...
T Consensus 696 ~~~~F~se~~~~g--~v-~~~~~~LrI~~i~~~~~~~~~~i--p---L~~Tprri~y~~~~~~~~v~~~~~~~--~~~~~ 765 (1158)
T 3ei3_A 696 YMCPLNSDGYPDS--LA-LANNSTLTIGTIDEIQKLHIRTV--P---LYESPRKICYQEVSQCFGVLSSRIEV--QDTSG 765 (1158)
T ss_dssp EEEEECCSSSTTE--EE-EECSSCEEEEEECCSSSEEEEEE--E---CSSEEEEEEEEGGGTEEEEEEEEEEE--ECSSS
T ss_pred eEeccCcccCCCc--EE-EEcCCceEEEEecccCCeeEEEE--e---CCCCceEEEEcCCCCEEEEEEEeccc--ccccc
Confidence 111111222 22 22345577777643221111111 1 23478899999998877666544211 11100
Q ss_pred c--c---------------------------cCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEE---EccC
Q 001352 767 N--D---------------------------LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA---LSKN 814 (1093)
Q Consensus 767 ~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~---~s~d 814 (1093)
. . ...-+.......+++.|+.+...+...++.. ...+.+++ |..+
T Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~---nE~~~sv~~v~~~~~ 842 (1158)
T 3ei3_A 766 GTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ---NEYALSLVSCKLGKD 842 (1158)
T ss_dssp SEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT---TEEEEEEEEECCTTC
T ss_pred ccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC---CcceEEEEEEEEccC
Confidence 0 0 0000111123457778888777666666643 34445544 4333
Q ss_pred -CCEEEEEe-----------CCeEEEEEccCceeEEEEC-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceee
Q 001352 815 -DAYLFSAS-----------GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 881 (1093)
Q Consensus 815 -g~~la~~~-----------dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~ 881 (1093)
..++++|. .|.|.+|++..++...... ...+.+++++-- +|++|| |- ..+|++|++...+.+.
T Consensus 843 ~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla-~i-g~~l~vy~l~~~~~L~ 918 (1158)
T 3ei3_A 843 PNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLA-SI-NSTVRLYEWTTEKELR 918 (1158)
T ss_dssp CCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEE-EE-TTEEEEEEECTTSCEE
T ss_pred CCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEE-Ec-CCEEEEEECCCCceEE
Confidence 46888775 2569999997554332221 235678887754 455544 33 4789999998655443
Q ss_pred ecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEE
Q 001352 882 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLA 961 (1093)
Q Consensus 882 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~ 961 (1093)
.-..+-..|..+.....+++++.|..-..|.+...+..+... ..+.. +-.. .+++++.|-.++.++++-.+|.+.
T Consensus 919 ~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L-~~~a~-D~~~---~~vta~~~ld~~t~l~aD~~gNl~ 993 (1158)
T 3ei3_A 919 TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNF-EEIAR-DFNP---NWMSAVEILDDDNFLGAENAFNLF 993 (1158)
T ss_dssp EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEE-EEEEE-CCSC---BCEEEEEEEETTEEEEEETTSEEE
T ss_pred EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeE-EEEEe-eccc---ccEEEEEEEccCcEEEEcCCCcEE
Confidence 111122224333343457899999888778776654322111 11111 1111 368999998887666666778888
Q ss_pred EEEcCCc-------ceeeeeecCC-CCCEEEEEE---ccC---------CCEEEEEeCCCcEEEEEcC
Q 001352 962 IYEAEEL-------TCLKQWFPIS-SVPISQATF---SCD---------CRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus 962 vwd~~~~-------~~~~~~~~~h-~~~v~~~~f---s~d---------g~~l~t~~~dg~v~vwd~~ 1009 (1093)
+...... +.+.....-| ...|+++.- .+. ...++.++.+|.|.+.-.-
T Consensus 994 vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~pl 1061 (1158)
T 3ei3_A 994 VCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSL 1061 (1158)
T ss_dssp EEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEEE
T ss_pred EEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEEc
Confidence 8876431 2222211112 556777652 222 2346777888988876443
No 243
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=99.02 E-value=0.00029 Score=88.62 Aligned_cols=569 Identities=11% Similarity=0.087 Sum_probs=279.9
Q ss_pred eEEEEECCCCCEEEEEEcCCEEEEEEccCCCc-----ccceEEeccccccEEEEEeeCCC---CcEEEEEE---cCCCcE
Q 001352 400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPC---KQISVITC---GDDKTI 468 (1093)
Q Consensus 400 V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~-----~~~~~~~~~h~~~v~~~~~s~d~---~~l~l~s~---~~d~~i 468 (1093)
..++++-.+| +|..|+..|.=.+|.+..... +....++ ..-++|.+++..... .. .++++ +.+|.+
T Consensus 329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL 405 (1158)
T 3ei3_A 329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSL 405 (1158)
T ss_dssp CSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEE
T ss_pred ccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeE
Confidence 3567777655 788888777767777664321 1222233 345689888875421 11 23333 356788
Q ss_pred EEEECCCC-ceeEE--eecCCCCeEEeeecc-cCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--CceEEEEEc--c
Q 001352 469 KVWDAVTG-SRTYS--FEGHGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYS--A 540 (1093)
Q Consensus 469 ~vwd~~~~-~~~~~--~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~s--~ 540 (1093)
++..-.-+ +.+.. +. .-..++.+.... +....+|+.+..+.+ +++.+... ........+ .....++.. +
T Consensus 406 ~~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l~ 482 (1158)
T 3ei3_A 406 RIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNVA 482 (1158)
T ss_dssp EEEEESBCEEEEEEECCC-SCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEET
T ss_pred EEEecCCCEEEEEeecCC-CccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEcC
Confidence 88742211 11112 22 123445544321 122357777666666 55554321 222221111 111111111 2
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--EEe
Q 001352 541 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TID 618 (1093)
Q Consensus 541 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~ 618 (1093)
++ .++=.. ...|++.+...+..+..+.... +..|...+.+. .+++.++ ++.+.++.+..+++.. ...
T Consensus 483 ~~-~ivQVt-----~~~Irli~~~~~~~~~~w~~p~--~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~ 551 (1158)
T 3ei3_A 483 HQ-QLIQIT-----SASVRLVSQEPKALVSEWKEPQ--AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTE 551 (1158)
T ss_dssp TT-EEEEEE-----SSCEEEEESSSCCEEEEECCTT--CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEE
T ss_pred CC-eEEEEe-----cCEEEEEECCCCeEEEEEECCC--CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccC
Confidence 22 333333 2237777766555555554433 24566666553 4666665 6788888887664332 222
Q ss_pred cCCCCCCCceEEEecC------CCEEEEEEC-CCeEEEEEcCCCceeeeccccc-ccceeeeecCCCceeeeeccCCceE
Q 001352 619 AGGGLPENPRICFNKN------GTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVS 690 (1093)
Q Consensus 619 ~~~~~~~v~~v~~s~~------~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~ 690 (1093)
. ...|.|+++.|. +.++++|.. |++++|+++.+.+.+....-.. ....++.+. .
T Consensus 552 l---~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~---------------~ 613 (1158)
T 3ei3_A 552 M---EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMT---------------T 613 (1158)
T ss_dssp C---SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEE---------------E
T ss_pred C---CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEE---------------E
Confidence 2 235888888763 479999997 9999999998655443211110 111111111 0
Q ss_pred ecCCCCCCCccceeecccccceecceeecc--CccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcc
Q 001352 691 VNEDPKEDVKPEISVEAENKSEVEKPLFAR--PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 768 (1093)
Q Consensus 691 ~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~ 768 (1093)
+ ....++..|-.||.+..+.++... ........+ ...++.=..+...|..-+.+..+.-..++.-.
T Consensus 614 ~-----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L----G~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~--- 681 (1158)
T 3ei3_A 614 F-----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL----GTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN--- 681 (1158)
T ss_dssp E-----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC----CSSCCEEEEEESSSCEEEEEESSSCEEEEESS---
T ss_pred e-----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc----CCCceEEEEEeeCCceeEEEECCCCEEEEEcC---
Confidence 1 122445566666665444433211 000000010 11223222333333322222223222222211
Q ss_pred cCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeE-EEEccC--CCEEEEEeCCeEEEEEccCce--eEEEECCC
Q 001352 769 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FALSKN--DAYLFSASGGVISLYIVMTFK--TILTIMPP 843 (1093)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~s~d--g~~la~~~dg~i~iwd~~~~~--~~~~~~~~ 843 (1093)
+. +....+ ....+.. ..|+.. ..-++..+++.++|..+.+.. .++++. -
T Consensus 682 --------------------~~-l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L 735 (1158)
T 3ei3_A 682 --------------------HK-LVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP-L 735 (1158)
T ss_dssp --------------------SS-EEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE-C
T ss_pred --------------------Cc-eEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEe-C
Confidence 00 111111 1112222 234332 134555556668887765322 223332 2
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCC-------------------------------------------------CeEEEEEc
Q 001352 844 SPTATSLAFNPHDNNVIAIGMDD-------------------------------------------------STILIYNA 874 (1093)
Q Consensus 844 ~~~i~~l~~s~~d~~~lasg~~d-------------------------------------------------g~i~iwd~ 874 (1093)
...+..++++| ..+.++++..+ +.|++.|.
T Consensus 736 ~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp 814 (1158)
T 3ei3_A 736 YESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQ 814 (1158)
T ss_dssp SSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEET
T ss_pred CCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeC
Confidence 34677788887 55544433211 24677777
Q ss_pred CCcceeeeccc-ccCCeEEEE---EeCC-CCEEEEEe----------CCCcEEEEeCCCCceeeeeeeecCCCcccCCCC
Q 001352 875 RSSEVISKLEG-HSKRVTGLV---FSDA-LNILVSSG----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 939 (1093)
Q Consensus 875 ~~~~~~~~l~~-h~~~V~~l~---~s~d-g~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1093)
.+.+.+..++- ....+.+++ |..+ ..+++.|. ..|.|.++++..++... +...+- .+.
T Consensus 815 ~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~l---v~~~~v----~g~ 887 (1158)
T 3ei3_A 815 HTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQT---VAEKEV----KGA 887 (1158)
T ss_dssp TTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEE---EEEEEE----SSC
T ss_pred CCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEE---EEEEEc----CCc
Confidence 77766554432 222344444 3332 46788775 34789999997543222 211110 135
Q ss_pred ceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc--CCCceEEEe
Q 001352 940 ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA--SNLEVQCRI 1017 (1093)
Q Consensus 940 v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~--~~~~~~~~~ 1017 (1093)
+++++-- +| +|+++-..++++|++...+.++. ...+-..|..+.....|.++++|..-..|.+... ..+++..--
T Consensus 888 v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~-~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a 964 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIA 964 (1158)
T ss_dssp EEEEEEE-TT-EEEEEETTEEEEEEECTTSCEEE-EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEE
T ss_pred CEEEeee-CC-EEEEEcCCEEEEEECCCCceEEE-EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEE
Confidence 6666533 23 77777789999999986654431 1111112323333345778888887777777554 333333111
Q ss_pred ccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCC
Q 001352 1018 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1063 (1093)
Q Consensus 1018 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~ 1063 (1093)
..+. ..+..++.+-. ...++.+..+|.+++...+.
T Consensus 965 --~D~~-------~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 965 --RDFN-------PNWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp --ECCS-------CBCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred --eecc-------cccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 1222 23344555542 35889999999999998865
No 244
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.99 E-value=2.3e-08 Score=112.72 Aligned_cols=233 Identities=9% Similarity=0.013 Sum_probs=160.6
Q ss_pred cCCCEEEEEe--CCeEEEEEccCceeEEEECCC-CCCeEEEEE-c-CCCCCEEEEEe------------------CCCeE
Q 001352 813 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM------------------DDSTI 869 (1093)
Q Consensus 813 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~d~~~lasg~------------------~dg~i 869 (1093)
+||+++.+.. +++|.+.|+.+.++.+.+.-. ......+++ + | +++++++++ .++.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence 3899998886 477999999999988855433 346788888 5 8 888888884 34689
Q ss_pred EEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCC--------------------------------------cE
Q 001352 870 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--------------------------------------QI 911 (1093)
Q Consensus 870 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg--------------------------------------~i 911 (1093)
.+.|..+.+.+.++.--. ....++++|||+++++++.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999998888776322 346688999999999888653 35
Q ss_pred EEEeCCC--CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcc------------eeeeee
Q 001352 912 FVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT------------CLKQWF 975 (1093)
Q Consensus 912 ~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~------------~~~~~~ 975 (1093)
.|.|..+ ++.. ...+... ....++.++|||++++++ .+++|.++|+.+.+ ......
T Consensus 257 ~VID~~~~~~~~~-~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~ 328 (595)
T 1fwx_A 257 KVVDGRKEASSLF-TRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 328 (595)
T ss_dssp EEEECSGGGCCSS-EEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred EEEeCcccCCcee-EEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC
Confidence 6666665 2110 1112221 135679999999999985 56789999999763 223322
Q ss_pred cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC----------CceEEEeccccccCCCCCCCccceeEEEeCCCCCC
Q 001352 976 PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1045 (1093)
Q Consensus 976 ~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1045 (1093)
. ......++|++||...++...|+.|.+||+.+ ...+.++.. .+.|.+ ...++..+.+| ||+
T Consensus 329 v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqpGh----~~~~~g~t~~~-DGk 400 (595)
T 1fwx_A 329 L--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQPGH----LKTVMGETLDA-TND 400 (595)
T ss_dssp C--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCEEE----EEETTTTSTTC-CSS
T ss_pred C--CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-cccccc----ceeccceEeCC-CCC
Confidence 2 45788999999995556777899999999987 445555542 122111 11223456788 688
Q ss_pred EEEEEeCCC--cE-----------EEEecCC
Q 001352 1046 QFAVGLTNG--EV-----------YVIEPNE 1063 (1093)
Q Consensus 1046 ~l~~~~~dg--~v-----------~~w~~~~ 1063 (1093)
+|+++..-. ++ +++|++.
T Consensus 401 ~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~ 431 (595)
T 1fwx_A 401 WLVCLSKFSKDRFLNVGPLKPENDQLIDISG 431 (595)
T ss_dssp EEEEEESCCTTSSCCCCSSCCEEEEEEECSS
T ss_pred EEEEcCCCCccccccCCCCCCCcceEEEcCC
Confidence 888876533 33 8899943
No 245
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=6e-10 Score=123.52 Aligned_cols=190 Identities=7% Similarity=-0.034 Sum_probs=112.4
Q ss_pred CCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCC
Q 001352 408 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 487 (1093)
Q Consensus 408 dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~ 487 (1093)
++.++++++.|+.|+.||..+|+.+. .+.. +.+.+..+..++. ++++++.|+.|+.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 57899999999999999999998655 3333 4555556667776 677788999999999999998877654321
Q ss_pred CeEEeeecccC-CccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352 488 PVYSLCPHAKE-NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 566 (1093)
Q Consensus 488 ~v~~~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 566 (1093)
.... ..|.- ++..+++++.++.++.||..+++....+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~~--~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELVQ--ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHHT--TCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred cccc--cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 1110 01111 33478888999999999999988877665543 2345678888888765 677999999999
Q ss_pred eeeeeeecccccCCCeEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceEEEEec
Q 001352 567 AIKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDA 619 (1093)
Q Consensus 567 ~~~~~~~~~~~~~~~v~~v~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 619 (1093)
+.+-.+.... .....+.++. ..+++++.+|.|+.||..+|+.+.....
T Consensus 151 ~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8776654322 1222333332 5678889999999999999998887764
No 246
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.92 E-value=0.00033 Score=82.44 Aligned_cols=533 Identities=9% Similarity=-0.012 Sum_probs=277.8
Q ss_pred eEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-EcCCEEEEEEcc
Q 001352 349 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYH 427 (1093)
Q Consensus 349 ~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-~~d~~i~iwd~~ 427 (1093)
+|+.+ ..+.|+..++.+........ + ..-..+..++|.+.+..|..+ ..++.|..+++.
T Consensus 8 ~Ll~s--~~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~ 67 (628)
T 4a0p_A 8 FLLFS--RRADIRRISLETNNNNVAIP-----------------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMN 67 (628)
T ss_dssp EEEEE--ETTEEEEEESSCTTCEEECC-----------------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--eCCcEEEEECCCCCcceEEE-----------------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence 44554 44778999988765332111 1 123468899999977666655 457889999987
Q ss_pred CCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEE-
Q 001352 428 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI- 506 (1093)
Q Consensus 428 ~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~- 506 (1093)
.... .. .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.|. +|.+.++-
T Consensus 68 g~~~-~~--v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~ 142 (628)
T 4a0p_A 68 GSAL-EH--VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW 142 (628)
T ss_dssp SCSC-EE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred CCCc-EE--EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence 6432 21 22222235678899877665 4566666788999997654432223233445678888654 33344443
Q ss_pred ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEE
Q 001352 507 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 586 (1093)
Q Consensus 507 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~ 586 (1093)
+..+.|...+++......... .......+++++++..|+.+-. +.+.|...|+..... ..+.... .....++
T Consensus 143 g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~gla 214 (628)
T 4a0p_A 143 GGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLT 214 (628)
T ss_dssp SSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEE
T ss_pred CCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEE
Confidence 235678888877655444333 3456789999999888887754 255799999875443 3333322 3456777
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE-EecCCCEEEEEECCCeEEEEEcCCCceeeeccccc
Q 001352 587 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKNGTLLAVIANENRIKILETPESNSVDAAGVLS 665 (1093)
Q Consensus 587 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 665 (1093)
+.. +..+++-...+.|...|..+++....+..... ....+. +++..+. + . ..+ ....
T Consensus 215 v~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~-~-----------n~C----~~~n 272 (628)
T 4a0p_A 215 QYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G-W-----------NEC----ASSN 272 (628)
T ss_dssp EET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C-C-----------CTT----TTTG
T ss_pred EEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c-c-----------eEe----ccCC
Confidence 754 33344444678899999888877666653321 123332 2221110 0 0 000 0000
Q ss_pred ccceeeeec-CCCceeeeeccCCceE-ecCCC-CCCCccceeecccccceecceeeccCccccccccCccccccceEEEE
Q 001352 666 DNLRKLSVN-PISTVTGAGIANGSVS-VNEDP-KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 742 (1093)
Q Consensus 666 ~~i~~~~~~-~~~~~~~~~~~~~~~~-~~~~~-s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 742 (1093)
.....+++. |.+...-.+ ..+... -++.. .+...+++.+. ...|+-..+..... ....++. .....+.+++
T Consensus 273 g~C~~~C~~~~~~~~~C~C-~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~---~~~~l~~-~~~~~~~~ld 346 (628)
T 4a0p_A 273 GHCSHLCLAVPVGGFVCGC-PAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQS---PDIILPI-HSLRNVRAID 346 (628)
T ss_dssp GGCSSEEEEETTTEEEEEC-STTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCC---CCEECCC-TTCSCEEEEE
T ss_pred CCcchhhhcCCCCCeeEEc-CCCcEecccCCcCccccceeeeec-cceEEEEecccccC---ceEEEEe-hhcCCceEEE
Confidence 000001110 101000000 000000 00000 01122233222 23344333321110 0111111 1234577899
Q ss_pred eecCCceEEEeec-cceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEE
Q 001352 743 YNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 821 (1093)
Q Consensus 743 ~s~~g~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~ 821 (1093)
|.+....|+.+.. .+.|..++...... .. +......+......+..+|+...++.|..+
T Consensus 347 ~d~~~~~iy~sD~~~~~I~r~~~~g~~~-----------~~---------v~~~~~~~~~~~~~p~glAvD~~~~nLY~t 406 (628)
T 4a0p_A 347 YDPLDKQLYWIDSRQNMIRKAQEDGSQG-----------FT---------VVVSSVPSQNLEIQPYDLSIDIYSRYIYWT 406 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSC-----------EE---------EEC--------CCCEEEEEEETTTTEEEEE
T ss_pred EecCCCeEEEEecCcceEEEEEcCCCCc-----------eE---------EEEcccccccccCCcceEEeeccCCeEEEE
Confidence 9887665655543 45565554322100 00 100000000023457899999988877766
Q ss_pred e--CCeEEEEEccCceeEEEE-CCCCCCeEEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcceeeec-ccccCCeEEEEE
Q 001352 822 S--GGVISLYIVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKL-EGHSKRVTGLVF 895 (1093)
Q Consensus 822 ~--dg~i~iwd~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~lasg~~dg--~i~iwd~~~~~~~~~l-~~h~~~V~~l~~ 895 (1093)
. .+.|.+.++. |+....+ .........+++.|..+.++.+-.... .|...+++ |.....+ ...-.....|++
T Consensus 407 d~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~ 484 (628)
T 4a0p_A 407 CEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKPIALAL 484 (628)
T ss_dssp ETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCEEEEEE
T ss_pred cCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCccEEEE
Confidence 5 4789999986 4444443 334567899999995555555543333 57777766 3333322 323445789999
Q ss_pred eCCCCEEEEEe-CCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeee
Q 001352 896 SDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQ 973 (1093)
Q Consensus 896 s~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~ 973 (1093)
.++++.|..+. ..+.|...++++..... +.. ... ....++++.. +.+..+ ...+.|...|..+|+....
T Consensus 485 D~~~~~LYw~D~~~~~I~~~~~dG~~r~~---~~~--~~~---~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~ 555 (628)
T 4a0p_A 485 DSRLGKLFWADSDLRRIESSDLSGANRIV---LED--SNI---LQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTK 555 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEE---EEC--SSC---SCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEE
T ss_pred eCCCCEEEEEeCCCCEEEEEeCCCCceEE---EEc--CCC---CCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEE
Confidence 99877766554 45789999997643221 111 111 1245666644 333333 2445677777776665443
No 247
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.91 E-value=5.3e-10 Score=123.94 Aligned_cols=190 Identities=9% Similarity=0.056 Sum_probs=108.8
Q ss_pred CCCEEEEEeCCCeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCccc
Q 001352 856 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 935 (1093)
Q Consensus 856 d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 935 (1093)
++..|++++.||.|+.||..+|+.+.++.. +.+.+..+..+++.+++++.|+.|+.||..+++..............
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~- 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ- 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence 456888999999999999999999988876 55666666778888888889999999999887643211111000000
Q ss_pred CCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceE
Q 001352 936 LAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1014 (1093)
Q Consensus 936 ~~~~v~~~~~s~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~ 1014 (1093)
.+..++.++ .+++ +.++.++.||..+|+.+..+.. +. ...++|++..+++++.|+.|+.||..+|+.+
T Consensus 85 -----~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 85 -----ASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp -----TCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred -----cCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 011112344 4444 6789999999999998766432 21 2456778889999999999999999999988
Q ss_pred EEeccccccCCCCCCCccceeEEEeCCC--CCCEEEEEeCCCcEEEEecCCCCCCcccC
Q 001352 1015 CRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1071 (1093)
Q Consensus 1015 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 1071 (1093)
.++....+.. .+++++ -...+++++.||.|+.||.......|...
T Consensus 154 W~~~~~~~~~------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 154 WNATYFDYAA------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CEEEEEEECC------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EeEecccccC------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 7765322111 112220 01467788999999999998888888754
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.85 E-value=2.4e-06 Score=102.28 Aligned_cols=376 Identities=13% Similarity=0.123 Sum_probs=205.3
Q ss_pred EEEEEcCCCcEEEEECCCCceeEEeecCCCCe-----------EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe
Q 001352 458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 526 (1093)
Q Consensus 458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v-----------~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 526 (1093)
.++.++.++.|.-+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+..+
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 46666778899999999999998775432110 11122 2357888899999999999999988876
Q ss_pred cCCCCc-eEEEEEcc--CCCEEEEEecCC--CCceeEEEEeCCCCeeeeeeecccc------------------------
Q 001352 527 DAPGLG-CTRMAYSA--NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL------------------------ 577 (1093)
Q Consensus 527 ~~~~~~-v~~~~~s~--d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~------------------------ 577 (1093)
...... ...+..+| .+..++++.... ..++.|+.+|..+|+.+-.+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 553210 00011111 133454443221 1257899999999998877653110
Q ss_pred ----cCCCeEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceEEEEecCCCC-------CCCc
Q 001352 578 ----QHNSVSVVHFDTAKDQILAAGDDH-------------------VIKIWDMNKVQLLTTIDAGGGL-------PENP 627 (1093)
Q Consensus 578 ----~~~~v~~v~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~~v~ 627 (1093)
.......+++.|+...++.++.++ .|..+|..+|+.+..+....+. ....
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 001122468888888888887766 3999999999999888753221 1111
Q ss_pred eEEEecCCC---EEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCcccee
Q 001352 628 RICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 704 (1093)
Q Consensus 628 ~v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s 704 (1093)
...+..+|+ .+++++.+|.++++|..+++.+...+..... ....+.+ ..+...+......+++.
T Consensus 304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~---------~~g~p~~~~~~~~~~~~--- 370 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDL---------ATGRPVEAPGVRYEKEP--- 370 (668)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-SEEEECT---------TTCCEEECTTTTCSSSC---
T ss_pred EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc-ccccccc---------ccCCccccccccccCCe---
Confidence 122334665 6888999999999999999887554322210 0011110 00000110000000000
Q ss_pred ecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCccc
Q 001352 705 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 784 (1093)
Q Consensus 705 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 784 (1093)
.+..+.......-..++++|+...+++...+-...... .. ..|
T Consensus 371 ---------------------~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~-~~---------------~~~ 413 (668)
T 1kv9_A 371 ---------------------IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRN-EG---------------KDF 413 (668)
T ss_dssp ---------------------EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECC-CG---------------GGC
T ss_pred ---------------------eEECCCCccccCCCcceECCCCCEEEEeccccceEeee-ec---------------ccc
Confidence 00011100111112367888877776665542222110 00 001
Q ss_pred CCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEE-EEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEE
Q 001352 785 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 862 (1093)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la-~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las 862 (1093)
....+. . .... + .+..++ ... +|.|..||+.+|+.+.+...+. ......+.. .+.++++
T Consensus 414 ~~~~~~--~--------~g~~-----~--~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~ 474 (668)
T 1kv9_A 414 VTRKAF--N--------TAAG-----F--ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQ 474 (668)
T ss_dssp CCCSSC--C--------CSSC-----G--GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEE
T ss_pred cccccc--c--------cCcc-----c--cccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEE
Confidence 100000 0 0000 0 011111 112 4789999999999887765333 222233334 4568888
Q ss_pred EeCCCeEEEEEcCCcceeeecccccCCe-EEEEEeCCCC-EEEEEe
Q 001352 863 GMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG 906 (1093)
Q Consensus 863 g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~-~l~s~s 906 (1093)
|+.||.++.||..+|+.+..++...+.. .-+.+..+|+ +++.++
T Consensus 475 g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 475 GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 9999999999999999998876543211 2244455776 444443
No 249
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.85 E-value=7.4e-06 Score=86.05 Aligned_cols=223 Identities=12% Similarity=0.045 Sum_probs=143.5
Q ss_pred CCeEEEEECCCCCEEEEEE-cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352 398 VSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 476 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 476 (1093)
..+..++|++++..|..+. .++.|.+++..++.. .. .+.........+++.+++.. ++++-...+.|.+++....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~--~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TT--IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EE--EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EE--EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 4578899999776666554 567999999987542 21 22222346789999998664 4556666789999997644
Q ss_pred ceeEEeecCCCCeEEeeecccCCccEEEEEec---CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001352 477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 553 (1093)
Q Consensus 477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 553 (1093)
...............+++++. +..|+.+.. .+.|..++++.................+++++++..|+.+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~--~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV--RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT--TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEeeC--CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 322222222245677888543 234444443 468888887654433333233346789999999888877654
Q ss_pred CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352 554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
+.+.|..+|...........+. .....++.. +..++.+. ..+.|.++|..+++.+..+..... +....+++.
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~-~~p~gi~~~ 259 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIA 259 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEE
T ss_pred CCCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc-cccceeeec
Confidence 2567999998765544333321 234566654 45565554 568999999999999888864421 235788888
Q ss_pred cCCC
Q 001352 633 KNGT 636 (1093)
Q Consensus 633 ~~~~ 636 (1093)
|++.
T Consensus 260 ~~~~ 263 (267)
T 1npe_A 260 LSQC 263 (267)
T ss_dssp CSCC
T ss_pred CccC
Confidence 8764
No 250
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.83 E-value=1.1e-05 Score=84.83 Aligned_cols=257 Identities=11% Similarity=0.021 Sum_probs=156.1
Q ss_pred CCEEEEEEcCCEEEEEEccCCCccc--ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCC
Q 001352 409 GSLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 486 (1093)
Q Consensus 409 g~~las~~~d~~i~iwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~ 486 (1093)
|.+|..+.. +.|+.+++.+..... ....+......+..++|++++.. ++++-...+.|.+++...+.....+....
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~ 78 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL 78 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence 345666554 478889987654211 01112222345789999997764 45566667899999987665443333333
Q ss_pred CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352 487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 566 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 566 (1093)
.....+++.+. ++.+.++....+.|.+++++.................++++|++..|+.+.... ..+.|..+++...
T Consensus 79 ~~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~ 156 (267)
T 1npe_A 79 GSPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT 156 (267)
T ss_dssp CCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC
T ss_pred CCccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC
Confidence 46778888543 234555556678999999876544333333334678999999777766654321 1356888887543
Q ss_pred eeeeeeecccccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE-CC
Q 001352 567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE 644 (1093)
Q Consensus 567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d 644 (1093)
....+.... ......+++++++..|+.+ ...+.|.++|..+......+... .....++.. +..++++. ..
T Consensus 157 -~~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d--~~~lyva~~~~ 228 (267)
T 1npe_A 157 -NRRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKT 228 (267)
T ss_dssp -CCEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTT
T ss_pred -CcEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe--CCEEEEEECCC
Confidence 223332111 2457889999987777665 45688999999765544444321 123456654 44555444 56
Q ss_pred CeEEEEEcCCCceeeeccccc-ccceeeeecCCC
Q 001352 645 NRIKILETPESNSVDAAGVLS-DNLRKLSVNPIS 677 (1093)
Q Consensus 645 g~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~ 677 (1093)
+.|..++..+++.+..+.... .....+++.|..
T Consensus 229 ~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 229 NSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp TEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred CeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 899999999887776665332 234555555443
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.83 E-value=1.4e-06 Score=104.27 Aligned_cols=194 Identities=13% Similarity=0.142 Sum_probs=129.4
Q ss_pred CCeEEEEEccCceeEEEECCCC-------------------------------CCeEEEEEcCCCCCEEEEEeCCC----
Q 001352 823 GGVISLYIVMTFKTILTIMPPS-------------------------------PTATSLAFNPHDNNVIAIGMDDS---- 867 (1093)
Q Consensus 823 dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~d~~~lasg~~dg---- 867 (1093)
++.|..+|..+|+.+.++.... .....+++.| +..+++.++.++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 4677778888888777664210 0112478888 677888888776
Q ss_pred ---------------eEEEEEcCCcceeeeccc--cc-------CCeEEEEEeCCCC---EEEEEeCCCcEEEEeCCCCc
Q 001352 868 ---------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG 920 (1093)
Q Consensus 868 ---------------~i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~---~l~s~s~dg~i~iwd~~~~~ 920 (1093)
.|.-+|..+|+.+..++. |. .++....+..+|+ .++.++.+|.+.++|..+++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 399999999999877653 32 2333333444775 68899999999999999988
Q ss_pred eeeeeeeec---------CCCcc--------c------C-----CCCceEEEEccCCCEEEEE-----------------
Q 001352 921 IQTCRSLQT---------PDGVM--------T------L-----APSETHIQFHKDQTRFLLV----------------- 955 (1093)
Q Consensus 921 ~~~~~~~~~---------~~~~~--------~------~-----~~~v~~~~~s~dg~~l~~~----------------- 955 (1093)
......... ..+.. . . ...-..++++|+..++.+.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 652111000 00000 0 0 0001237889988776651
Q ss_pred --------------------eCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEE
Q 001352 956 --------------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1015 (1093)
Q Consensus 956 --------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~ 1015 (1093)
.++.|..||+.+|+.+-+...+ .++....+...|.++++++.||.++.||..+|+.+.
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 1267999999999987664432 233334556678899999999999999999999998
Q ss_pred Eecc
Q 001352 1016 RILS 1019 (1093)
Q Consensus 1016 ~~~~ 1019 (1093)
++..
T Consensus 494 ~~~~ 497 (668)
T 1kv9_A 494 QFEA 497 (668)
T ss_dssp EEEC
T ss_pred EecC
Confidence 8874
No 252
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.79 E-value=4.1e-06 Score=97.72 Aligned_cols=166 Identities=14% Similarity=0.175 Sum_probs=106.2
Q ss_pred EEEEcCCCCCEEEEEeCC----------------CeEEEEEcCCcceeeeccc--cc--------CCeEEEEEe-CCC--
Q 001352 849 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL-- 899 (1093)
Q Consensus 849 ~l~~s~~d~~~lasg~~d----------------g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~dg-- 899 (1093)
.+++.+ ...+++.+..+ +.|.-+|..+|+.+..++. |. .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 356667 55577777655 3899999999999877654 21 1221 2222 567
Q ss_pred -CEEEEEeCCCcEEEEeCCCCceeeeeeeec----------CCCccc---------------------CCCCceEEEEcc
Q 001352 900 -NILVSSGGDAQIFVWDVDGWGIQTCRSLQT----------PDGVMT---------------------LAPSETHIQFHK 947 (1093)
Q Consensus 900 -~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~~---------------------~~~~v~~~~~s~ 947 (1093)
+.++.++.+|.+.+.|..+++..-...... ..+... -...-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567778999999999999987554222110 000000 000123567888
Q ss_pred CCCEEEEE----------------------------------------eCCeEEEEEcCCcceeeeeecCCCCCEEEEEE
Q 001352 948 DQTRFLLV----------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATF 987 (1093)
Q Consensus 948 dg~~l~~~----------------------------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~f 987 (1093)
+..++.+. ..+.|.-||+.+|+.+-+...+ .++..-.+
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~ 480 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM 480 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence 87766541 2257888999999877654322 22222223
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352 988 SCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 988 s~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
...|.+++.++.||.++.||..+|+.+.++.
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 3466788889999999999999999998886
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.79 E-value=6.6e-07 Score=91.59 Aligned_cols=199 Identities=12% Similarity=0.072 Sum_probs=138.1
Q ss_pred CeeEEEEccCCCEEEEEe---CCeEEEEEccCceeEEEECCCC-CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCccee
Q 001352 805 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 880 (1093)
Q Consensus 805 ~v~~l~~s~dg~~la~~~---dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~ 880 (1093)
....++|++|+.++++.+ ++.|.++|+.+++.+..+.... .....+++. ++++.++...++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 457899999976666554 3789999999999998876322 233356665 3455566667899999999999998
Q ss_pred eecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCe
Q 001352 881 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 959 (1093)
Q Consensus 881 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~ 959 (1093)
.++..-... ...+++||+.|+++..++.|.++|..+.+......+... +... ..+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~--~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRV--IRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEEC--CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Cccc--ccceeEEEE-CCEEEEecCCCCe
Confidence 887532121 244667888887777788999999998665443222211 1110 135678888 77554444 4689
Q ss_pred EEEEEcCCcceeeeeecCC------------CCCEEEEEEccCCCE-EEEEeCCCcEEEEEcCCC
Q 001352 960 LAIYEAEELTCLKQWFPIS------------SVPISQATFSCDCRM-VFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus 960 i~vwd~~~~~~~~~~~~~h------------~~~v~~~~fs~dg~~-l~t~~~dg~v~vwd~~~~ 1011 (1093)
|.+.|.++++.+..+..+. ......++|+|+++. ++|+...+.+.+.++...
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 9999999999888765320 135689999999865 455556788888887664
No 254
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.78 E-value=0.00093 Score=78.57 Aligned_cols=503 Identities=9% Similarity=-0.053 Sum_probs=255.1
Q ss_pred CCCCeEEEEECCCCCEEEEEE-cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC
Q 001352 396 PGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 474 (1093)
Q Consensus 396 h~~~V~~v~~s~dg~~las~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~ 474 (1093)
.-..+..++|++.+..|..+. ..+.|..+++.+..... ..+..-......+++.+.+.. ++++-...+.|.+.++.
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~--~v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~d 114 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLD 114 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE--EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE--EEEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECC
Confidence 345678999999777776654 46789999987653211 123333356889999997664 56666778899999976
Q ss_pred CCceeEEeecCCCCeEEeeecccCCccEEEEE-ecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC
Q 001352 475 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 553 (1093)
Q Consensus 475 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 553 (1093)
.......+...-.....+++.+.. +.++++- +..+.|...+++.................+++++++..|+.+-.
T Consensus 115 G~~~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~--- 190 (619)
T 3s94_A 115 GSLRKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA--- 190 (619)
T ss_dssp SCSCEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---
T ss_pred CCCEEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---
Confidence 544333332344456677876542 3344443 22466777777654444444444556789999998888877743
Q ss_pred CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEe-
Q 001352 554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN- 632 (1093)
Q Consensus 554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s- 632 (1093)
....|...|+..........+.. .....+++..+ ..+++-...+.|...|..+++....+.... .....+.+.
T Consensus 191 ~~~~I~~~~~dG~~~~~~~~~~~---~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~ 264 (619)
T 3s94_A 191 KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAFS 264 (619)
T ss_dssp TTCCEEEESSSCCEEC------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEECC
T ss_pred CCCeEEEecCCCCccEEEEeCCC---CCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEEc
Confidence 25569999987654433333222 23346677654 334444567889999988887766554321 112333332
Q ss_pred cCCCEEEEEECCCeEEEEEcCCC--ceeeecccccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001352 633 KNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 710 (1093)
Q Consensus 633 ~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~ 710 (1093)
|..+-. +..... ...+ ..+.......... .+.+|.+..+......+ . .....+|+.+ ..+.
T Consensus 265 ~~~qp~--~~n~C~-----~~ng~Cs~lCl~~~~~~~~--~C~C~~g~~l~~d~~~C---~----~~~~~~Ll~~-~~~~ 327 (619)
T 3s94_A 265 QQRQPN--ATNPCG-----IDNGGCSHLCLMSPVKPFY--QCACPTGVKLLENGKTC---K----DGATELLLLA-RRTD 327 (619)
T ss_dssp GGGSCC--CCCTTT-----TTGGGCSSEEEECSSTTSE--EEECCTTCCBCTTSSCB---C----SSCSEEEEEE-ESSC
T ss_pred cccCCC--cccccc-----CCCCcccceEECCCCCCCc--eEeCCchheecccCccc---C----CCCceEEEEE-cccc
Confidence 211000 000000 0000 0000000000000 01111111111000000 0 0012223333 2345
Q ss_pred ceecceeeccCccccccccCccccccceEEEEeecCCceEEEee-ccceeEEeeecCcccCcCcccccccCCcccCCCCC
Q 001352 711 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 789 (1093)
Q Consensus 711 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1093)
|+..++...... ...++. ..-..+.+++|.+.+..|+.+. ..+.|..++.....
T Consensus 328 i~~i~l~~~~~~---~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~--------------------- 382 (619)
T 3s94_A 328 LRRISLDTPDFT---DIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG--------------------- 382 (619)
T ss_dssp EEEEESSSTTCC---CEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---------------------
T ss_pred eEEEecCCCccc---eeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc---------------------
Confidence 555554432211 111111 1234567899988655555444 45666665543210
Q ss_pred CceeeccCCCCCCCCCeeEEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeC-C
Q 001352 790 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-D 866 (1093)
Q Consensus 790 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-d 866 (1093)
. ..... ..-.....+++...+..|..+. .+.|.+.++........+...-.....+++.|..|.+..+-.. .
T Consensus 383 ~-~~v~~----~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~ 457 (619)
T 3s94_A 383 S-QFVVT----AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI 457 (619)
T ss_dssp C-EEEEC----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSS
T ss_pred c-EEEEE----CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCC
Confidence 0 00000 0223456899987666666665 4789999987543322233344678999999944544444322 3
Q ss_pred CeEEEEEcCCcceeeecccccCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEE
Q 001352 867 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 945 (1093)
Q Consensus 867 g~i~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 945 (1093)
+.|...+++...........-.....|++.++++.|..+. ..+.|...++++..... ....... ....+++
T Consensus 458 ~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~~~~l~------~P~glav 529 (619)
T 3s94_A 458 PKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV--LVEDKIP------HIFGFTL 529 (619)
T ss_dssp CEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EEECCCC------SSCCEEE
T ss_pred CEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE--EeccCCC------CcEEEEE
Confidence 5777777763322222233345678899998776666554 45678889887644222 2221111 2335555
Q ss_pred ccCCCEEEEE--eCCeEEEEEcCCc
Q 001352 946 HKDQTRFLLV--HETHLAIYEAEEL 968 (1093)
Q Consensus 946 s~dg~~l~~~--~d~~i~vwd~~~~ 968 (1093)
..+ .|..+ ..+.|...|..+|
T Consensus 530 ~~~--~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 530 LGD--YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp ETT--EEEEECTTSSCEEEEESSSC
T ss_pred ECC--EEEEeecCCCeEEEEEcCCC
Confidence 433 44443 3455666666665
No 255
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.74 E-value=0.0017 Score=79.47 Aligned_cols=572 Identities=11% Similarity=0.042 Sum_probs=298.1
Q ss_pred CCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC
Q 001352 397 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 476 (1093)
Q Consensus 397 ~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~ 476 (1093)
...|.++.-..+|. |-.|+.+| +..||-..-+..... -......|.++....+|. |..|+.+| +..||..+.
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~--~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTY--GENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCT--TSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTTT
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEcc--CCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCCC
Confidence 56799999888874 44566777 667774321111100 011234688888777764 44555554 789998876
Q ss_pred ceeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEe----cCCCCceEEEEEccCCCEEEEEecCC
Q 001352 477 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----DAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 477 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
+...........|.++.. .++ .|..++.+ -+..+|..+....... ......|.++....+|...+.. .
T Consensus 93 ~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~-- 164 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT-Y-- 164 (758)
T ss_dssp EECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEE-T--
T ss_pred EEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEe-C--
Confidence 543211112234666543 233 45556655 5777887654432220 1223468888888888876643 2
Q ss_pred CCceeEEEEeCCCCeeeeeeeccc--ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 630 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 630 (1093)
. -|..++..+++......... .....|.++...+++..|..|+. +.+..+|..+++........ ...|.++.
T Consensus 165 --~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--~~~i~~i~ 238 (758)
T 3ott_A 165 --N-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--NNSIKSLA 238 (758)
T ss_dssp --T-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE--EEEEEEEE
T ss_pred --C-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC--CCeEEEEE
Confidence 2 27788887765432111100 01234788888777776666664 46888998876543221111 12367777
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCceeeecc-------cccccceeeeecCCCceeeeeccCCceEecCCCCCCCccce
Q 001352 631 FNKNGTLLAVIANENRIKILETPESNSVDAAG-------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 703 (1093)
Q Consensus 631 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~ 703 (1093)
...+|.+.+ |+. +-+.+++..+........ -....|.++..... |...
T Consensus 239 ~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~----------------------g~lW- 293 (758)
T 3ott_A 239 LDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE----------------------HNIW- 293 (758)
T ss_dssp ECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT----------------------CCEE-
T ss_pred EcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC----------------------CCEE-
Confidence 777776554 454 457778776543221111 11123444443322 2222
Q ss_pred eecccccceecceeeccCcccccc-ccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCc
Q 001352 704 SVEAENKSEVEKPLFARPSECQSL-LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 782 (1093)
Q Consensus 704 s~~~d~~i~~w~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 782 (1093)
.|+..| +.+.... ........ ..........|.++....+|...+. +.+| +..++-..... ....
T Consensus 294 iGT~~G-l~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~---------~~~~ 359 (758)
T 3ott_A 294 LGTDYG-ISLSRYN--SALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGER---------HDAI 359 (758)
T ss_dssp EEESSS-EEEECCC--C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSC---------CCCE
T ss_pred EEeCCc-ccccccC--CceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccccccc---------ceeE
Confidence 222223 2211110 00000000 0001112346888888888885544 4555 33333221100 0011
Q ss_pred ccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEE--CC----CCCCeEEEEEcCCC
Q 001352 783 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFNPHD 856 (1093)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~s~~d 856 (1093)
.+...... ..+ ....|.++.-.++|.+.+.. ++.+..++..+++...-. .. ....|.++...+ +
T Consensus 360 ~~~~~~~~----~~l----~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~ 429 (758)
T 3ott_A 360 WYRMGDKT----YPL----SHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-A 429 (758)
T ss_dssp EECTTCSS----SCC----SCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-T
T ss_pred EeccCCcC----CCC----CCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-C
Confidence 11110000 001 24568899888888876654 668999998877654321 11 224578888876 5
Q ss_pred CCEEEEEeCCCeEEEEEcCCc-----cee---eec---cc-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 001352 857 NNVIAIGMDDSTILIYNARSS-----EVI---SKL---EG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 924 (1093)
Q Consensus 857 ~~~lasg~~dg~i~iwd~~~~-----~~~---~~l---~~-h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~ 924 (1093)
++ |-.|+..+-+.++|..+. ... ..+ .+ ....|.++...++|++.+.++..+-|..+|..+++...
T Consensus 430 g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~- 507 (758)
T 3ott_A 430 GQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK- 507 (758)
T ss_dssp SE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE-
T ss_pred CC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE-
Confidence 65 445776666888886531 111 111 11 12358899999999887643334448889988755332
Q ss_pred eeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecC-CCCCEEEEEEccCCCEEEEEeCCCcE
Q 001352 925 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTL 1003 (1093)
Q Consensus 925 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~~~fs~dg~~l~t~~~dg~v 1003 (1093)
+.. ... .....+.++....+|.+.+.+. +.+..|+..++....-...+ ....|.++... +|.+ ..++..| +
T Consensus 508 --~~~-~~~-~~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~l-Wi~t~~G-l 579 (758)
T 3ott_A 508 --LFA-DEL-TGEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNSI-WVSTTNG-L 579 (758)
T ss_dssp --ECT-TTS-CGGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTEE-EEEESSC-E
T ss_pred --ecC-CCc-CCCcccceEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCCE-EEECCCC-e
Confidence 111 110 0012477888888998887654 56888887765432210111 13467888764 6654 4455565 7
Q ss_pred EEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecC
Q 001352 1004 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1062 (1093)
Q Consensus 1004 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~ 1062 (1093)
..+|..+.+... +. ++.. .+.. ++...+ + ..|..|+.+|- ..++..
T Consensus 580 ~~~~~~~~~~~~-~~----~~~~----~~~~-~~~~~~-~-G~l~fG~~~Gl-~~f~p~ 625 (758)
T 3ott_A 580 WIIDRKTMDARQ-QN----MTNK----RFTS-LLFDPK-E-DCVYLGGADGF-GISHSN 625 (758)
T ss_dssp EEEETTTCCEEE-C------CCC----CCSE-EEEETT-T-TEEEEECBSEE-EEEEC-
T ss_pred EEEcCCCceeEE-ec----CCCC----ceee-eEEECC-C-CcEEEecCCce-EEEChh
Confidence 788988775432 21 1111 1221 222233 3 46777777774 455554
No 256
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.73 E-value=2.6e-06 Score=87.21 Aligned_cols=216 Identities=9% Similarity=-0.006 Sum_probs=144.2
Q ss_pred ceeEEEECCCCC--CeEEEEEcCCCCCEEEEEeC--CCeEEEEEcCCcceeeeccccc-CCeEEEEEeCCCCEE-EEEeC
Q 001352 834 FKTILTIMPPSP--TATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNIL-VSSGG 907 (1093)
Q Consensus 834 ~~~~~~~~~~~~--~i~~l~~s~~d~~~lasg~~--dg~i~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l-~s~s~ 907 (1093)
.+.+.++. |.. ....++|++ ++.+.++.+. ++.|.++|+.+++.+..+.-.. .....+++. ++.| ++.-.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 44556664 443 468999999 6655554443 5799999999999888764211 122345555 4444 45556
Q ss_pred CCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeeeecCC----CCCE
Q 001352 908 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS----SVPI 982 (1093)
Q Consensus 908 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~~~~~~~~h----~~~v 982 (1093)
++.+.++|..+.+.... +....+ ....+++||+.++++ .+++|.++|.++.+.+..+..+. -..+
T Consensus 85 ~~~v~viD~~t~~v~~~--i~~g~~--------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKN--FTHQMK--------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp CSEEEEEETTTTEEEEE--EECCSS--------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CCEEEEEECCCCcEEEE--EECCCC--------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 88999999998664432 222101 124477788877775 46789999999998887766442 1246
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCC---CCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEE
Q 001352 983 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP---TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1059 (1093)
Q Consensus 983 ~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w 1059 (1093)
..+.|. ||+..+....++.|.+.|..+++...++......+. ..+.....+.-++|+|+...+++++...+.|++-
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 788888 786666665678999999999999999975422110 0011123445789999655677888889999999
Q ss_pred ecCCC
Q 001352 1060 EPNEP 1064 (1093)
Q Consensus 1060 ~~~~~ 1064 (1093)
++.+.
T Consensus 234 ~l~~~ 238 (266)
T 2iwa_A 234 KLHLV 238 (266)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 98654
No 257
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.69 E-value=3.1e-05 Score=90.59 Aligned_cols=378 Identities=11% Similarity=0.000 Sum_probs=202.3
Q ss_pred EEEEEcC-CCcEEEEEC-CCCceeEEeecCCC-Ce----------EEeeecccCCccEEEEEecCCeEEEEEcCCCCceE
Q 001352 458 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGA-PV----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 524 (1093)
Q Consensus 458 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~h~~-~v----------~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 524 (1093)
.++.++. ++.|.-+|. .+|+.+.++..... .+ ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3556666 788999999 89999877653221 00 11222 23478888899999999999999887
Q ss_pred EecCCCC----ceEE-EEEccCCCEEEEEecCC--CCceeEEEEeCCCCeeeeeeeccccc-------------------
Q 001352 525 DYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 578 (1093)
Q Consensus 525 ~~~~~~~----~v~~-~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~------------------- 578 (1093)
....... .+.+ ... .++ .++++.... ..++.|+.+|..+|+.+-.+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 7654321 1111 111 144 444443211 01567999999999987665532200
Q ss_pred ---------------CC-CeEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEecCCCCC--
Q 001352 579 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP-- 624 (1093)
Q Consensus 579 ---------------~~-~v~~v~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~-- 624 (1093)
.. ....+++.++...++.+..+ +.|..+|..+|+.+..+....+..
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00 01235667776777776532 359999999999998876542210
Q ss_pred --CCce---EEEecCCC---EEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecCCCC
Q 001352 625 --ENPR---ICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 696 (1093)
Q Consensus 625 --~v~~---v~~s~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s 696 (1093)
.+.. +....+|+ .++.++.+|.+.++|..+++.+.........-..-.+.+ ..+...+.....
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~---------~~g~p~~~~~~~ 368 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL---------KTGTPVRDPEFA 368 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------TTCSEEECGGGC
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------cCCceecccccC
Confidence 1112 22224674 577888899999999999977765432110000000000 000000000000
Q ss_pred CCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccc
Q 001352 697 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 776 (1093)
Q Consensus 697 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~ 776 (1093)
+ .+........|.......-..++++|+...+++...+....++..+..
T Consensus 369 ~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~--------- 417 (571)
T 2ad6_A 369 T----------------------RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP--------- 417 (571)
T ss_dssp C----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC---------
T ss_pred C----------------------CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc---------
Confidence 0 000000001111001111135688998888888877644444332110
Q ss_pred cccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCC
Q 001352 777 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD 856 (1093)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d 856 (1093)
...+.. .-.....+..+|.+. + ...+|.|..||..+++.+.++.... .+....+.. .
T Consensus 418 ---------~~~g~~----------~~g~~~~~~~~~~~~-~-~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~ 474 (571)
T 2ad6_A 418 ---------YRAGQF----------FVGATLAMYPGPNGP-T-KKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-K 474 (571)
T ss_dssp ---------CCTTSC----------CCCEEEEEEECTTST-T-SCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-T
T ss_pred ---------cccCCc----------cccccceeccCcccc-C-CCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-C
Confidence 001110 000111122233321 0 0124788999999998887765322 222222232 3
Q ss_pred CCEEEEEeCCCeEEEEEcCCcceeeecccccCC-eEEEEEeCCCCEEEE
Q 001352 857 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 904 (1093)
Q Consensus 857 ~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l~s 904 (1093)
+.++++++.||.|+.+|..+|+.+.+++..... -.-+.+..+|+.++.
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 456777999999999999999999887643221 122345577765543
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.65 E-value=4e-05 Score=89.66 Aligned_cols=380 Identities=11% Similarity=0.068 Sum_probs=200.4
Q ss_pred EEEEcCCCcEEEEECCCCceeEEeecCCCCe---------EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC
Q 001352 459 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 529 (1093)
Q Consensus 459 l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v---------~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 529 (1093)
++.++.++.|.-+|..+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4444443448999999999988775432210 11122 2347888899999999999999988776543
Q ss_pred CC----ceE-EEEEcc---CCC-EEEEEecCC--CCceeEEEEeCCCCeeeeeeeccccc--------------------
Q 001352 530 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------- 578 (1093)
Q Consensus 530 ~~----~v~-~~~~s~---d~~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------- 578 (1093)
.. .+. ...+.. +|+ .++++.... ..++.|+.+|..+|+.+-........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 31 111 111111 233 455543211 12578999999999877554321000
Q ss_pred ------------------CCCeEEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceEEE
Q 001352 579 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT 616 (1093)
Q Consensus 579 ------------------~~~v~~v~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 616 (1093)
...-..+++.|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 000123567777778887663 2 5899999999999988
Q ss_pred EecCCCCC----CCc-eEEEe---cCCC---EEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeecc
Q 001352 617 IDAGGGLP----ENP-RICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 685 (1093)
Q Consensus 617 ~~~~~~~~----~v~-~v~~s---~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 685 (1093)
+....+.. .+. -+.+. .+|+ .++.++.+|.++++|..+++.+.........-..-.+.+ .
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~---------~ 377 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDL---------K 377 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECT---------T
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccc---------c
Confidence 76532210 111 12222 4674 788899999999999999988766543221000000000 0
Q ss_pred CCceEecCCCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeec
Q 001352 686 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 765 (1093)
Q Consensus 686 ~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~ 765 (1093)
.+.........+.. +.. .+ +........|.......-..++++|+...+++...+-...++..+
T Consensus 378 ~g~p~~~~~~~~~~--~~~--~~------------~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~ 441 (582)
T 1flg_A 378 TGRPVEREGQRPPL--PEP--GQ------------KHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEE 441 (582)
T ss_dssp TCCEEECTTCSCCC--CCT--TC------------SSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECC
T ss_pred CCCEeEccccCCcc--ccc--cc------------cCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeeccc
Confidence 00000000000000 000 00 000000111111111112246788877777776655333333211
Q ss_pred CcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCC
Q 001352 766 RNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP 845 (1093)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~ 845 (1093)
.. ...|. ...-..+...|++. ..+|.|..||+.+++.+.+......
T Consensus 442 ~~------------------~~~g~------------~~~g~~~~~~p~~~----~~~G~l~A~D~~tG~~~W~~~~~~~ 487 (582)
T 1flg_A 442 VS------------------YTKGS------------AYLGMGFRIKRMYD----DHVGSLRAMDPVSGKVVWEHKEHLP 487 (582)
T ss_dssp CC------------------CCTTS------------CCCCEEEEEEESCS----SCSEEEEEECTTTCCEEEEEEESSC
T ss_pred cc------------------ccCCC------------ceeccceeecCCCC----CCcceEEEEECCCCCEEEEecCCCC
Confidence 00 00111 10011122223310 1257899999999998877653322
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCe-EEEEEeCCCCEEE
Q 001352 846 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILV 903 (1093)
Q Consensus 846 ~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l~ 903 (1093)
+..-.+.. .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..+|+..+
T Consensus 488 -~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 488 -LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp -CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred -CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 21111112 34577789999999999999999998887543322 1256667886443
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.65 E-value=1.3e-05 Score=93.78 Aligned_cols=167 Identities=9% Similarity=0.064 Sum_probs=107.0
Q ss_pred EEEEcCCCCCEEEEEeCC----------------CeEEEEEcCCcceeeeccc--cc--------CCeEEEEEeCCCC--
Q 001352 849 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFSDALN-- 900 (1093)
Q Consensus 849 ~l~~s~~d~~~lasg~~d----------------g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s~dg~-- 900 (1093)
.+++.+ +...++.+..+ +.|..+|..+|+.+..++. |. .++. +....+|+
T Consensus 239 ~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~ 316 (571)
T 2ad6_A 239 WYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMT 316 (571)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEE
T ss_pred eEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEE
Confidence 356777 44566666532 3699999999998877652 21 2221 23334774
Q ss_pred -EEEEEeCCCcEEEEeCCCCceeeeeeeec-C---------CCcc-------------------cC--CCCceEEEEccC
Q 001352 901 -ILVSSGGDAQIFVWDVDGWGIQTCRSLQT-P---------DGVM-------------------TL--APSETHIQFHKD 948 (1093)
Q Consensus 901 -~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~---------~~~~-------------------~~--~~~v~~~~~s~d 948 (1093)
.++.++.+|.+.+.|..+++..-...+.. . .+.. .. ...-..++|+|+
T Consensus 317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 396 (571)
T 2ad6_A 317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE 396 (571)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence 57788899999999999987543221110 0 0000 00 000135789998
Q ss_pred CCEEEEE-e-------------------------------------CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccC
Q 001352 949 QTRFLLV-H-------------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCD 990 (1093)
Q Consensus 949 g~~l~~~-~-------------------------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~d 990 (1093)
..++.+. . ++.|..||+.+|+.+-+...+ ..+....+...
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~ 474 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTK 474 (571)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEET
T ss_pred CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEEC
Confidence 8887763 2 367999999999887664432 22333333445
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352 991 CRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus 991 g~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
+..+++++.||.|+.||..+|+.+.++..
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 66778899999999999999999988873
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.63 E-value=5e-05 Score=88.84 Aligned_cols=150 Identities=12% Similarity=0.090 Sum_probs=96.2
Q ss_pred CeEEEEEcCCcceeeeccc--cc--------CCeEEEEEe-CCCC---EEEEEeCCCcEEEEeCCCCceeeeeeeec---
Q 001352 867 STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT--- 929 (1093)
Q Consensus 867 g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~dg~---~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--- 929 (1093)
+.|.-+|..+|+.+..++. |. .++. +... .+|+ .++.++.+|.+.++|..+++..-......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 6899999999999877642 32 1221 2222 4674 78889999999999999987543221110
Q ss_pred ---------------CCCcc-----------------cCC--CCceEEEEccCCCEEEE-Ee------------------
Q 001352 930 ---------------PDGVM-----------------TLA--PSETHIQFHKDQTRFLL-VH------------------ 956 (1093)
Q Consensus 930 ---------------~~~~~-----------------~~~--~~v~~~~~s~dg~~l~~-~~------------------ 956 (1093)
..... ... ..-..++++|+..++.+ ..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00000 000 00125678887666554 21
Q ss_pred ---------------CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352 957 ---------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus 957 ---------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
++.|.-||+.+|+.+-+...+. ++..-.....|.++++++.||.++.||..+|+.+.++..
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 4679999999998876544322 222222233566888899999999999999999998874
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.63 E-value=6.8e-05 Score=87.42 Aligned_cols=382 Identities=11% Similarity=0.036 Sum_probs=200.6
Q ss_pred EEEEEcC-CCcEEEEEC-CCCceeEEeecCCCC-----------eEEeeecccCC--ccEEEEEecCCeEEEEEcCCCCc
Q 001352 458 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKEN--IHFIFSISVDGKIKAWLYDSLGA 522 (1093)
Q Consensus 458 ~l~s~~~-d~~i~vwd~-~~~~~~~~~~~h~~~-----------v~~~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~ 522 (1093)
.++.++. ++.|.-+|. .+|+.+.++...... ...+++.+..+ ...|+.++.|+.+..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4666666 788999999 899998777533211 11223311111 12388888999999999999998
Q ss_pred eEEecCCCC----ceEE-EEEccCCCEEEEEecCCC--CceeEEEEeCCCCeeeeeeeccccc-----------------
Q 001352 523 RVDYDAPGL----GCTR-MAYSANGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQ----------------- 578 (1093)
Q Consensus 523 ~~~~~~~~~----~v~~-~~~s~d~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~----------------- 578 (1093)
+........ .+.+ ..+ .++ .+++++...+ .++.|+.+|..+|+.+-.+......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 877654321 1111 111 144 4444432111 2578999999999987665532200
Q ss_pred -----------------CC-CeEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceEEEEecCCCCC
Q 001352 579 -----------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP 624 (1093)
Q Consensus 579 -----------------~~-~v~~v~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 624 (1093)
.. .-...++.++...++.+..+ +.|..+|..+|+.+..+....+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 00 00134566777888887655 389999999999998877543311
Q ss_pred ----CCce-EEEe---cCC---CEEEEEECCCeEEEEEcCCCceeeecccccccceeeeecCCCceeeeeccCCceEecC
Q 001352 625 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 693 (1093)
Q Consensus 625 ----~v~~-v~~s---~~~---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1093)
.... +.+. .+| ..++.++.+|.+.++|..+++.+.........-..-.+. ...+...+..
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~---------~~~g~p~~~~ 372 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD---------LKTGQPVRDP 372 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC---------TTTCCEEECG
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc---------cCCCceeecc
Confidence 0111 2222 467 567778899999999999998776543211000000000 0000000000
Q ss_pred CCCCCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCc
Q 001352 694 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 773 (1093)
Q Consensus 694 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~ 773 (1093)
...+ .+.....+..|.......-..++++|+...+++...+....++-.+.
T Consensus 373 ~~~~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~------- 423 (599)
T 1w6s_A 373 EYGT----------------------RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFML------- 423 (599)
T ss_dssp GGCC----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCC-------
T ss_pred ccCC----------------------CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccc-------
Confidence 0000 00000011111111122233578899988887777663332221100
Q ss_pred ccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEc
Q 001352 774 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 853 (1093)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s 853 (1093)
....+.. .-..-..+..+|.+.-......|.|..||+.+++.+.+.......... .+.
T Consensus 424 -----------~~~~g~~----------~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-~~~ 481 (599)
T 1w6s_A 424 -----------PYKAGQF----------FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-TMA 481 (599)
T ss_dssp -----------CCCTTSC----------CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-CEE
T ss_pred -----------cccCCcc----------eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc-ceE
Confidence 0000110 000000011122110000002467888999999887776422111111 122
Q ss_pred CCCCCEEEEEeCCCeEEEEEcCCcceeeecccccCCe-EEEEEeCCCCEE
Q 001352 854 PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNIL 902 (1093)
Q Consensus 854 ~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l 902 (1093)
. .+.+++.++.||.++.||.++|+.+.+++-..+.+ .-+.+..+|+..
T Consensus 482 t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 482 T-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp E-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred e-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 2 34577779999999999999999998876433211 224556677643
No 262
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.59 E-value=5.4e-06 Score=83.48 Aligned_cols=186 Identities=12% Similarity=0.093 Sum_probs=127.3
Q ss_pred CCeeEEEEccCCCEEEEEe-CC--eEEEEEccCceeEEEECCCCCCeE--EEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352 804 EAVPCFALSKNDAYLFSAS-GG--VISLYIVMTFKTILTIMPPSPTAT--SLAFNPHDNNVIAIGMDDSTILIYNARSSE 878 (1093)
Q Consensus 804 ~~v~~l~~s~dg~~la~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~--~l~~s~~d~~~lasg~~dg~i~iwd~~~~~ 878 (1093)
.-...+.|+ ++.++.+.+ +| .|+++|+++++.++.+.... ... .+++. ++++.+....++.+.+||..+.+
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc
Confidence 334788998 666666655 44 79999999999998886433 333 34554 34555555668999999999999
Q ss_pred eeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eC
Q 001352 879 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 957 (1093)
Q Consensus 879 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d 957 (1093)
.+.++.-.. ....+++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.+. +|+..+.. .+
T Consensus 119 ~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~ 191 (262)
T 3nol_A 119 QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQT 191 (262)
T ss_dssp EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTS
T ss_pred EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccC
Confidence 998887422 223444678877777667889999999876554322221 11111 134457776 77655555 57
Q ss_pred CeEEEEEcCCcceeeeeecCC-----------CCCEEEEEEccCCCEEEEEeCC
Q 001352 958 THLAIYEAEELTCLKQWFPIS-----------SVPISQATFSCDCRMVFTSFVD 1000 (1093)
Q Consensus 958 ~~i~vwd~~~~~~~~~~~~~h-----------~~~v~~~~fs~dg~~l~t~~~d 1000 (1093)
+.|.+.|.++|+.+..+..+. ..-...++|+|+++.|++.+..
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 799999999999887764321 2356889999998888877754
No 263
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.56 E-value=8.1e-06 Score=99.48 Aligned_cols=248 Identities=10% Similarity=-0.004 Sum_probs=134.3
Q ss_pred Cceeeeec-CCCceEEEEEccCC----cEEEEecCCC-ceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352 337 SPMSMDFH-PVQHTLLLVGTNVG----DTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 410 (1093)
Q Consensus 337 ~V~~~~~s-pdg~~llasg~~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~ 410 (1093)
.+...+|| |||++++.+.+.+| +|+++|+.+| +.+.. . +. .....++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~~---~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------VS---GTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------EE---EECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------cc---CceeeEEEecCCC
Confidence 67889999 99997555544444 4999999998 63311 0 10 1134688999999
Q ss_pred EEEEEEcC-----CEEEEEEccCCCcccceEEec-cccccEEEEEeeCCCCcEEEEEEc-CCCcEEEEECCCCc-ee--E
Q 001352 411 LLGVAYSK-----HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--Y 480 (1093)
Q Consensus 411 ~las~~~d-----~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~d~~~l~l~s~~-~d~~i~vwd~~~~~-~~--~ 480 (1093)
.|+....+ ..|.++++.++...... .+. .+......+.|||||+.+++.+.. ....|.++|+.++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99888765 26888888776422111 222 233456788999999963333322 23468888988763 22 3
Q ss_pred Ee-ecCCCCeEEeeecccCCccEEEEEecC--C--eEEEEEcCCCCceEE-ecCCCC--ceEEEEEccCCCEEEEEecCC
Q 001352 481 SF-EGHGAPVYSLCPHAKENIHFIFSISVD--G--KIKAWLYDSLGARVD-YDAPGL--GCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 481 ~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d--g--~i~vwd~~~~~~~~~-~~~~~~--~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
.+ ........++.|+ .++.+++....+ + .|..+++.+...... +..+.. .+..+. +++..|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~--~~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIA--VRSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEE--ECSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEE--EECCEEEEEEE-e
Confidence 33 3334455555432 233344444443 2 566666654222112 222222 344444 44566665543 2
Q ss_pred CCceeEEEEeC-------CCCeeeeeeecccccCCCeEEEEE----cCCCCEE-EEEeC---CCcEEEEECCCCce
Q 001352 553 EGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGD---DHVIKIWDMNKVQL 613 (1093)
Q Consensus 553 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~v~~----~~~~~~l-~~~~~---dg~i~iwd~~~~~~ 613 (1093)
++...|.++++ .+++..+.+.... ...+..+.+ ++++..+ ++.+. -+.++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34667888886 4443123332111 112233322 3455544 33332 24677888877764
No 264
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.55 E-value=6.7e-06 Score=82.79 Aligned_cols=185 Identities=14% Similarity=0.081 Sum_probs=129.0
Q ss_pred EEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEEeecCCCCe-EEeeecccCCccEEEEEecCCeEEEEEcCCCC
Q 001352 445 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 521 (1093)
Q Consensus 445 v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 521 (1093)
...+.|+ ++. ++++.+.+| .|+++|+++|+.+.++....... ..+++ .++ .+.+..-.++.+.++|..+.+
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~-~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKD-KIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETT-EEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCC-EEEEEEeeCCEEEEEECccCc
Confidence 4778898 554 667777666 89999999999998886433221 22443 322 444455568999999999999
Q ss_pred ceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc--cCCCeEEEEEcCCCCEEEEEeC
Q 001352 522 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGD 599 (1093)
Q Consensus 522 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~~~ 599 (1093)
.+..+...... ..+++|++.|+.+. +...|.++|..+.+.+..+..... .-..++.+.+. +|...+..-.
T Consensus 119 ~~~ti~~~~eG---~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 119 QVRSFNYDGEG---WGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp EEEEEECSSCC---CCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EEEEEECCCCc---eEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 88877764422 34457788877763 256799999999998888765320 11234556776 5654444447
Q ss_pred CCcEEEEECCCCceEEEEecCCC----------CCCCceEEEecCCCEEEEEEC
Q 001352 600 DHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIAN 643 (1093)
Q Consensus 600 dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~~~~~ 643 (1093)
++.|.+.|..+++.+..+...+- ....+.+||+|+++.|++.+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 88999999999999999876421 123478999999888888776
No 265
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.53 E-value=5.5e-06 Score=83.30 Aligned_cols=184 Identities=8% Similarity=0.074 Sum_probs=125.3
Q ss_pred CCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCe--EEEEEcCCCCCEEEEEeCCCeEEEEEcCCccee
Q 001352 804 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 880 (1093)
Q Consensus 804 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~ 880 (1093)
.-...+.|+. +.++.+.+ +|.|+++|+++++.++.+ -. ... -.+++. ++++.+....++.+.+||..+.+.+
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence 3456888873 44444444 588999999999998887 22 233 335664 4556666677899999999999999
Q ss_pred eecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCe
Q 001352 881 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 959 (1093)
Q Consensus 881 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~ 959 (1093)
.++..- ..-..+ ++|++.|+.+..++.|.++|..+.+......+....... ..+..+.|. +|+..+.. .++.
T Consensus 130 ~ti~~~-~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 130 RTTRYS-GEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---ELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEEECS-SCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTCSE
T ss_pred EEEeCC-CceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---ccccccEEe-CCEEEEEECCCCe
Confidence 888742 222334 467888887777889999999987655433332211111 134567776 77655555 5678
Q ss_pred EEEEEcCCcceeeeeecC------------CCCCEEEEEEccCCCEEEEEeC
Q 001352 960 LAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 999 (1093)
Q Consensus 960 i~vwd~~~~~~~~~~~~~------------h~~~v~~~~fs~dg~~l~t~~~ 999 (1093)
|.+.|.++|+.+..+..+ -..-...++++|+++.|++.+.
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 999999999988775432 1246688999998766666554
No 266
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.50 E-value=6.8e-06 Score=98.72 Aligned_cols=278 Identities=10% Similarity=0.015 Sum_probs=156.2
Q ss_pred eeeecC-CCceEEEEEccCC-----------cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECC
Q 001352 340 SMDFHP-VQHTLLLVGTNVG-----------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 407 (1093)
Q Consensus 340 ~~~~sp-dg~~llasg~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~ 407 (1093)
++++.| +|+ +++.|+.++ .+.+||..+++-..... +...+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCCC
Confidence 567777 776 677776532 57888888776432100 1122334445678889
Q ss_pred CCCEEEEEEc-CCEEEEEEccCCCcccceEEecccccc-EEEEEeeCCCCcEEEEEEc-CC-----CcEEEEECCCCcee
Q 001352 408 DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRT 479 (1093)
Q Consensus 408 dg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~d~~~l~l~s~~-~d-----~~i~vwd~~~~~~~ 479 (1093)
+|+.+++|+. +..+.+||..+++-.. ...+ +..+ -.+++..++|+ +++.|+ .+ ..+.+||..+++..
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~--~~~R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~ 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDM--QVARGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCC--SSCCSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeE-CCCC--CccccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce
Confidence 9999999984 4579999998764221 1111 1111 13455667888 777777 34 56999999887644
Q ss_pred EEe----ecCCCCeEEeeecccCCccEEEEEecCC---------eEEEEEcCCCCceEEecCC---------CCceEEEE
Q 001352 480 YSF----EGHGAPVYSLCPHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRMA 537 (1093)
Q Consensus 480 ~~~----~~h~~~v~~~~~~~~~~~~~l~s~~~dg---------~i~vwd~~~~~~~~~~~~~---------~~~v~~~~ 537 (1093)
..- ......-....+ ..++..++.++.+| .+..||..+..-....... ...-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 320 000000000011 12334455555444 4677887765533222111 11223444
Q ss_pred Ecc-CCCEEEEEecCCC----Cc---eeEEEEeCCCCeeeeee--ecccccCCCeEEEEEcCCCCEEEEEeCC-------
Q 001352 538 YSA-NGRRLFSCGTSKE----GE---SFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD------- 600 (1093)
Q Consensus 538 ~s~-d~~~l~~~~~~~~----~~---~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~v~~~~~~~~l~~~~~d------- 600 (1093)
+.. +++.++.|+.... .. ..|.+||..+....... .... ...-.+++..|+++.++.|+.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~~ 483 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFED 483 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcCC
Confidence 443 6777777764221 01 16888998877654433 1111 1223455677899999998754
Q ss_pred ----CcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEEC
Q 001352 601 ----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 643 (1093)
Q Consensus 601 ----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 643 (1093)
..+.+||..+.+....-.............+.|+|+.++.|+.
T Consensus 484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 5689999988765443222211122234556789999999885
No 267
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.46 E-value=0.00038 Score=75.19 Aligned_cols=234 Identities=9% Similarity=0.038 Sum_probs=133.7
Q ss_pred CCCeeEEEEccCCCEEEEEeCCeEEEEEccCceeEEEEC---CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce
Q 001352 803 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 879 (1093)
Q Consensus 803 ~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~ 879 (1093)
...+.+++|.+ +..++++..+.|.. ....|+.-.... .+...+..+++.+ +++.++++ .+|.|.. ..+.|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCC
Confidence 44678899986 56666666675433 222233322222 2334577888876 66666655 4564432 2222332
Q ss_pred e-eecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCC
Q 001352 880 I-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 958 (1093)
Q Consensus 880 ~-~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 958 (1093)
- ....++...+..+++.+++.+++.+...+..+-+|-.... ...+... .. ..+..++++++++.++++.+|
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t---W~~~~~~--~~---~~~~~~~~~~~g~~~~~~~~G 225 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA---WEPHNRT--TS---RRLHNMGFTPDGRLWMIVNGG 225 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSS---CEEEECC--SS---SCEEEEEECTTSCEEEEETTT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCc---eeECCCC--CC---CccceeEECCCCCEEEEeCCc
Confidence 1 1223455678999999998888766544433334431111 1122211 11 257889999999988888888
Q ss_pred eEEEEEcCCcceeeeeecC---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCcccee
Q 001352 959 HLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1035 (1093)
Q Consensus 959 ~i~vwd~~~~~~~~~~~~~---h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1035 (1093)
.+++.+...|+.......+ +...+.++.+.+++..++++ .+|.| .+..+.|+.-..+......+. .++
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~-----~~~-- 296 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPS-----NFY-- 296 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSS-----CCC--
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCC-----CeE--
Confidence 8877654435443332222 23468899999988877755 57766 566776755444431111112 244
Q ss_pred EEEeCCCCCCEEEEEeCCCcEEEEe
Q 001352 1036 AIAAHPLKPTQFAVGLTNGEVYVIE 1060 (1093)
Q Consensus 1036 ~~~~~p~d~~~l~~~~~dg~v~~w~ 1060 (1093)
++.|.+ +..+++++.+|.|.-++
T Consensus 297 ~v~~~~--~~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 297 KILFFS--PDQGFILGQKGILLRYV 319 (327)
T ss_dssp EEEEEE--TTEEEEECSTTEEEEEC
T ss_pred EEEEEC--CCceEEEcCCceEEEEc
Confidence 345543 35688888999776664
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.44 E-value=9.5e-05 Score=79.26 Aligned_cols=229 Identities=13% Similarity=0.107 Sum_probs=139.0
Q ss_pred CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEc-CCC-cEEEEECCC
Q 001352 398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK-TIKVWDAVT 475 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~-~d~-~i~vwd~~~ 475 (1093)
.....++|+++|+++++-..++.|..||..++. ... + ........+++.++|+ ++++.. .++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEE--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 457789999999977776678899999987532 211 1 2234688999999998 444443 333 477778788
Q ss_pred CceeEEeec-CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEE-e-------c--CCCCceEEEEEccCCCE
Q 001352 476 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR 544 (1093)
Q Consensus 476 ~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~-------~--~~~~~v~~~~~s~d~~~ 544 (1093)
++....... .......++.. .++..+++...++.|.++|......... . . ..-.....+ +++++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 875433221 11223344432 2334445544688888888765321111 1 0 111133445 889988
Q ss_pred EEEEecCCCCceeEEEEeCCC-Cee--eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC
Q 001352 545 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 621 (1093)
Q Consensus 545 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 621 (1093)
|+++.. ..+.|..+++.. +.. ...+.. ......++++++|+.+++....+.|.++|.. ++.........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 877653 256799999864 332 111211 1245668899999877777778899999975 65533222222
Q ss_pred CCCCCceEEEe---cCCCEEEEEECCC
Q 001352 622 GLPENPRICFN---KNGTLLAVIANEN 645 (1093)
Q Consensus 622 ~~~~v~~v~~s---~~~~~l~~~~~dg 645 (1093)
......+++|. |+++.|++.+..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 22346889998 8888887776643
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.44 E-value=3.6e-05 Score=83.32 Aligned_cols=241 Identities=10% Similarity=-0.009 Sum_probs=145.7
Q ss_pred CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEec-----------------cccccEEEEEeeC-CCCcEEE
Q 001352 398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-----------------AHVGNVNDLAFSA-PCKQISV 459 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~-----------------~h~~~v~~~~~s~-d~~~l~l 459 (1093)
....+++|.++|+++.++..++.|..||..+++. ..+.... .....+..+++.+ +++ |
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---L 94 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---E
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc---E
Confidence 4567789999999888888889999999876542 2111000 0123578899997 665 4
Q ss_pred EEEcCCCcEEEEECCCCceeEEeec-----CCCCeEEeeecccCCccEEEEEec-----------------CCeEEEEEc
Q 001352 460 ITCGDDKTIKVWDAVTGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLY 517 (1093)
Q Consensus 460 ~s~~~d~~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~vwd~ 517 (1093)
+.+...+.|..+|..+++. ..+.. .......+++.+. +|.+.++... +|.|..||.
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQR-TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTT-TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecC-CCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 4443345588888776543 22211 1123566777430 5555555432 366888877
Q ss_pred CCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--eeeeeecccccCCCeEEEEEcCCCCEEE
Q 001352 518 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQIL 595 (1093)
Q Consensus 518 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~v~~~~~~~~l~ 595 (1093)
.+........ .......++++|+|+.|+++.. ..+.|..+++.... ....+.... + ...+++.++|+..+
T Consensus 173 ~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 173 STKETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNADGHFWV 244 (322)
T ss_dssp TTTEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTTSCEEE
T ss_pred CCCEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCCCCEEE
Confidence 6554322211 1123457899999997776643 14569999987531 112222112 3 67889999998766
Q ss_pred EEeC----------CCcEEEEECCCCceEEEEecCCC--CCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001352 596 AAGD----------DHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNGTLLAVIANENRIKILETPE 654 (1093)
Q Consensus 596 ~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 654 (1093)
+... .+.|..+|. .++.+..+....+ ...+..+++ .+++++++....+.|..+++..
T Consensus 245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 6544 467888887 4777777765432 234566666 4566555555678899988763
No 270
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.43 E-value=4.6e-05 Score=76.13 Aligned_cols=188 Identities=10% Similarity=0.038 Sum_probs=126.7
Q ss_pred CCCeeEEEEccCCCEEEEEe-C--CeEEEEEccCceeEEEECCCCCC-eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc
Q 001352 803 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 878 (1093)
Q Consensus 803 ~~~v~~l~~s~dg~~la~~~-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~ 878 (1093)
..-...+.|++ +.++.+.+ + +.|+.+|+.+++.++.+...... --.+++. ++++.+....++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 44566899986 55555544 2 48999999999999887644332 2334554 45566666778999999999999
Q ss_pred eeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eC
Q 001352 879 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 957 (1093)
Q Consensus 879 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d 957 (1093)
.+.++... ..-..+ ++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.+. +|+..+.. .+
T Consensus 97 ~~~ti~~~-~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~--~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYP-GEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPL--DNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECS-SCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCC-CCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCccc--ccceeeEEe-CCEEEEEECCC
Confidence 99888743 222344 4677777766678899999999876544322222 11111 134455655 66655555 56
Q ss_pred CeEEEEEcCCcceeeeeecC------------CCCCEEEEEEccCCCEEEEEeCC
Q 001352 958 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFVD 1000 (1093)
Q Consensus 958 ~~i~vwd~~~~~~~~~~~~~------------h~~~v~~~~fs~dg~~l~t~~~d 1000 (1093)
+.|.+.|.++|+.+..+..+ ...-...++++|++..|++.+.-
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 79999999999988775432 12366889999988877777653
No 271
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.42 E-value=0.00011 Score=79.56 Aligned_cols=263 Identities=10% Similarity=0.029 Sum_probs=147.3
Q ss_pred CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeee--eecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352 336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKV--WDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 413 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la 413 (1093)
....+++|+++|+ ++.++..++.|..||..+++.... .... +....|...... ........+..+++.+++..|.
T Consensus 19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~-~~~~~~~~p~gi~~~~~~g~l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDF-AYASPYWNKAFCENSTDA-EKRPLCGRTYDISYNLQNNQLY 95 (322)
T ss_dssp SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEE-EESCTTCCHHHHTTCCCG-GGHHHHCCEEEEEEETTTTEEE
T ss_pred CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEE-ecccccccccccccccch-hccccCCCCceEEEcCCCCcEE
Confidence 3678899999998 467778889999999887654321 0000 000000000000 0000113578899998333455
Q ss_pred EEEcCCEEEEEEccCCCcccceE-Eecc-ccccEEEEEeeC-CCCcEEEEEEcC-----------------CCcEEEEEC
Q 001352 414 VAYSKHIVQLYAYHGGSDARQQL-EIDA-HVGNVNDLAFSA-PCKQISVITCGD-----------------DKTIKVWDA 473 (1093)
Q Consensus 414 s~~~d~~i~iwd~~~~~~~~~~~-~~~~-h~~~v~~~~~s~-d~~~l~l~s~~~-----------------d~~i~vwd~ 473 (1093)
++...+.|..+|..++.. ..+. ...+ .......+++.+ +|. +.++-.. ++.|..||.
T Consensus 96 v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEEEEeC
Confidence 555555688888776532 2111 1111 123478899999 887 4554322 367889998
Q ss_pred CCCceeEEeecCCCCeEEeeecccCCccEEEEE-ecCCeEEEEEcCCCC--ceEEecCCCCceEEEEEccCCCEEEEEec
Q 001352 474 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGT 550 (1093)
Q Consensus 474 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 550 (1093)
.+++....... ......++++ +++..|+.+ ...+.|.+|++.... ....+....+ ...+++.++|++.++...
T Consensus 173 ~~~~~~~~~~~-~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 173 STKETTLLLKE-LHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TTTEEEEEEEE-ESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEeccC-CccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence 77765432221 1234556774 466655444 667899999987521 1111111223 778999999987666542
Q ss_pred CC------CCceeEEEEeCCCCeeeeeeeccccc-CCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001352 551 SK------EGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 610 (1093)
Q Consensus 551 ~~------~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~ 610 (1093)
.. ...+.|..+|.. ++.+..+...... ...+..+++ .++..+++....+.|.++++..
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 10 013568888874 7777666543210 134566666 3454444455677888888753
No 272
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.40 E-value=0.00085 Score=73.04 Aligned_cols=249 Identities=11% Similarity=-0.010 Sum_probs=154.2
Q ss_pred CCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEE
Q 001352 335 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 414 (1093)
Q Consensus 335 ~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las 414 (1093)
.+..+|.+..+++ +|+++ ....|+..++.+...... +. ....+..++|.+.+..|..
T Consensus 33 ~d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~ 89 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFW 89 (349)
T ss_dssp TTSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccccCc-eeEee--cccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEE
Confidence 3456788877755 34443 335688888766543321 22 2345889999987666665
Q ss_pred E-EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEee
Q 001352 415 A-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 493 (1093)
Q Consensus 415 ~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 493 (1093)
+ ...+.|..+++.++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....++
T Consensus 90 ~D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ia 165 (349)
T 3v64_C 90 SDVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIA 165 (349)
T ss_dssp EETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEE
T ss_pred EeccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEE
Confidence 5 456789999988764221 12222234578899886664 456666678999999765543333333445567888
Q ss_pred ecccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeee
Q 001352 494 PHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 572 (1093)
Q Consensus 494 ~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 572 (1093)
+.|. ++.+.++-... +.|...+++...........-.....++++|++..|+.+-. +.+.|..+|+........+
T Consensus 166 vdp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 166 LHPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp EETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEE
T ss_pred EecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEE
Confidence 8653 33455555555 78888887754433333333445789999998888877643 2567999997654333223
Q ss_pred ecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001352 573 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 618 (1093)
Q Consensus 573 ~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 618 (1093)
.... .....+++. .+..+++-...+.|..++..+|+....+.
T Consensus 242 ~~~~---~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 242 SQGL---PHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSSC---SSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCC---CCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 455677773 34444555567788888877777666665
No 273
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.39 E-value=5e-05 Score=76.39 Aligned_cols=185 Identities=9% Similarity=0.073 Sum_probs=126.5
Q ss_pred CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352 398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 477 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 477 (1093)
.-...+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. ........++++. +.+..-.++.+.+||.++.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTTE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcCc
Confidence 335678887 4666677788889999999999877754 333 2222223335555 34445678999999999999
Q ss_pred eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC--C---ceEEEEEccCCCEEEEEecCC
Q 001352 478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--L---GCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~---~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
.+.++..... -..++. |+..|+.+..++.|.++|..+.+....+.... . .++.+.|. +|+.. +....
T Consensus 128 ~~~ti~~~~e-GwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly-anvw~- 199 (268)
T 3nok_A 128 RERTTRYSGE-GWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY-ANIWH- 199 (268)
T ss_dssp EEEEEECSSC-CCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE-EEETT-
T ss_pred EEEEEeCCCc-eeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE-EEECC-
Confidence 9999975322 234443 45677777779999999999988776654422 2 34567776 77544 43321
Q ss_pred CCceeEEEEeCCCCeeeeeeecccc----------cCCCeEEEEEcCCCCEEEEEeC
Q 001352 553 EGESFLVEWNESEGAIKRTYQGLQL----------QHNSVSVVHFDTAKDQILAAGD 599 (1093)
Q Consensus 553 ~~~~~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~v~~~~~~~~l~~~~~ 599 (1093)
...|.+.|..+|+.+..+..... .....+.++++|+++.|++.+.
T Consensus 200 --s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 200 --SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp --CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred --CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 44699999999999888764310 1246789999999887777663
No 274
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.36 E-value=7.4e-05 Score=89.66 Aligned_cols=120 Identities=12% Similarity=0.181 Sum_probs=76.4
Q ss_pred EEEEcc-CCCEEEEEecCCC-------CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEE
Q 001352 535 RMAYSA-NGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKI 605 (1093)
Q Consensus 535 ~~~~s~-d~~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~i 605 (1093)
..++.+ +++.++.++...+ ....+.+||+.+++..........+.....++++..++..++.|+ .++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 8888888775432 123689999998865433222111112334567788899888887 4568999
Q ss_pred EECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEE-CC-----CeEEEEEcCCC
Q 001352 606 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPES 655 (1093)
Q Consensus 606 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d-----g~i~iw~~~~~ 655 (1093)
||..+++....-...... .-.+++..+++++++.|+ .+ ..+.+||..+.
T Consensus 270 yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 999887665443322211 123456667899999988 33 45777777655
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.36 E-value=0.00016 Score=73.53 Aligned_cols=205 Identities=8% Similarity=0.009 Sum_probs=132.6
Q ss_pred hccCCCCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCC
Q 001352 331 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 410 (1093)
Q Consensus 331 l~~h~~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~ 410 (1093)
|.|-.+++..++|+|+++.|.++...++.|...|.. |+.+.... +.+ ....-.|++.+++.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~ 82 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQ 82 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCE
Confidence 445556899999999987788888889999999998 77776532 222 25677889999998
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEec------cccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECC---CCceeEE
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYS 481 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~------~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~---~~~~~~~ 481 (1093)
++++.-.++.+.++++.....+....... ........++|+|+++. |+++.......||.+. .+..+..
T Consensus 83 ~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i 160 (255)
T 3qqz_A 83 FVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHI 160 (255)
T ss_dssp EEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEE
T ss_pred EEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceee
Confidence 77776567889999987655322111111 13345689999999985 3334433334444432 1122222
Q ss_pred ee-------cCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCC---------CceEEEEEccCCCEE
Q 001352 482 FE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANGRRL 545 (1093)
Q Consensus 482 ~~-------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~s~d~~~l 545 (1093)
+. .+...+.+++++|. .+++++.....+.+.++|.... .+..+.... .....++|.++|+..
T Consensus 161 ~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly 238 (255)
T 3qqz_A 161 SKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY 238 (255)
T ss_dssp EECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE
T ss_pred ecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEE
Confidence 21 13345678888875 4577788888888999987644 433333322 256789999999866
Q ss_pred EEEecCCCCceeEEEEeC
Q 001352 546 FSCGTSKEGESFLVEWNE 563 (1093)
Q Consensus 546 ~~~~~~~~~~~~i~iwd~ 563 (1093)
++ +. .+.++.+..
T Consensus 239 Iv-sE----~n~~y~f~~ 251 (255)
T 3qqz_A 239 IV-SE----PNRFYRFTP 251 (255)
T ss_dssp EE-ET----TTEEEEEEC
T ss_pred EE-cC----CceEEEEEe
Confidence 55 33 335666653
No 276
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.33 E-value=0.00047 Score=73.74 Aligned_cols=227 Identities=10% Similarity=0.030 Sum_probs=136.3
Q ss_pred cceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCC
Q 001352 736 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 815 (1093)
Q Consensus 736 ~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 815 (1093)
.....++++++|+.+++-..++.|..|+.... . ..... .......++++++|
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~----------------------~-~~~~~-----~~~~p~gia~~~dG 83 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN----------------------Q-QIHAT-----VEGKVSGLAFTSNG 83 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC----------------------E-EEEEE-----CSSEEEEEEECTTS
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc----------------------e-EEEEe-----CCCCceeEEEcCCC
Confidence 35678999999986666556777776653211 0 11111 12357789999999
Q ss_pred CEEEEEeC-C--eEEEEEccCceeEEEECC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce-ee---------
Q 001352 816 AYLFSASG-G--VISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-IS--------- 881 (1093)
Q Consensus 816 ~~la~~~d-g--~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~-~~--------- 881 (1093)
+++++... + .|..++..+++....... .......++..+ ++..+++-..++.|+++|..+++. +.
T Consensus 84 ~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~ 162 (306)
T 2p4o_A 84 DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARS 162 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCS
T ss_pred cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccc
Confidence 97665542 2 466677777765433321 222345566666 665566555688999999876421 11
Q ss_pred ecccccCCeEEEEEeCCCCEEE-EEeCCCcEEEEeCCC-CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE-EeCC
Q 001352 882 KLEGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET 958 (1093)
Q Consensus 882 ~l~~h~~~V~~l~~s~dg~~l~-s~s~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~~d~ 958 (1093)
...+.-.....+ ++|++.|. +-...+.|..++++. ++......+... .....++++++|++.++ ...+
T Consensus 163 ~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-------~~P~gi~vd~dG~l~va~~~~~ 233 (306)
T 2p4o_A 163 NSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-------TNIDDFAFDVEGNLYGATHIYN 233 (306)
T ss_dssp STTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-------CCCSSEEEBTTCCEEEECBTTC
T ss_pred cccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-------CCCCCeEECCCCCEEEEeCCCC
Confidence 011111234455 88887654 445578899999875 332211222111 13567999999988777 4567
Q ss_pred eEEEEEcCCcceeee-eecCCCCCEEEEEEc---cCCCEEEEEeCCC
Q 001352 959 HLAIYEAEELTCLKQ-WFPISSVPISQATFS---CDCRMVFTSFVDG 1001 (1093)
Q Consensus 959 ~i~vwd~~~~~~~~~-~~~~h~~~v~~~~fs---~dg~~l~t~~~dg 1001 (1093)
.|.+++.. |+.... .........++++|. +|++.|+.++..+
T Consensus 234 ~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 234 SVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred eEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 89999975 554221 111223568999999 8988777666543
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.33 E-value=0.00061 Score=75.37 Aligned_cols=248 Identities=11% Similarity=-0.006 Sum_probs=154.6
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 415 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~- 415 (1093)
.-.|.+..+++ +|+++ ....|+..++.++..... . .....+..++|.+.+..|..+
T Consensus 78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~~-------------------~-~~~~~~~gl~~d~~~~~ly~~D 134 (386)
T 3v65_B 78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------L-NNLENAIALDFHHRRELVFWSD 134 (386)
T ss_dssp SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEEE-------------------E-CSCSCEEEEEEETTTTEEEEEE
T ss_pred CCeECCccccc-eeEee--cCccceeeccCCCcEEEE-------------------e-cCCCccEEEEEecCCCeEEEEe
Confidence 45577777755 34443 336788888876654321 1 233458899999866666555
Q ss_pred EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeec
Q 001352 416 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 495 (1093)
Q Consensus 416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 495 (1093)
...+.|..++..++.... .+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.
T Consensus 135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd 210 (386)
T 3v65_B 135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH 210 (386)
T ss_dssp TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence 466789999988754211 12222234567889876664 45666667789999876554333333334567788886
Q ss_pred ccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeec
Q 001352 496 AKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 574 (1093)
Q Consensus 496 ~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 574 (1093)
+. ++.+.++-... +.|..++++...........-.....++++|++..|+.+-. ..+.|..+|+........+..
T Consensus 211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence 54 33444554444 78888888765544444444446789999998888877643 256799999865433323322
Q ss_pred ccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEec
Q 001352 575 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 619 (1093)
Q Consensus 575 ~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 619 (1093)
.. .....+++ ..+..+++....+.|..++..+|+....+..
T Consensus 287 ~~---~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 287 GL---PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SC---SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CC---CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 22 45677777 3344455556778888888777777766653
No 278
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.33 E-value=8.7e-05 Score=74.12 Aligned_cols=186 Identities=12% Similarity=0.067 Sum_probs=127.9
Q ss_pred cEEEEEeeCCCCcEEEEEEcCCC--cEEEEECCCCceeEEeecCCCCe-EEeeecccCCccEEEEEecCCeEEEEEcCCC
Q 001352 444 NVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSL 520 (1093)
Q Consensus 444 ~v~~~~~s~d~~~l~l~s~~~d~--~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 520 (1093)
-...+.|++ +. ++.+.+.+| .|+++|+++|+.+.++....... -.+++ .+ +.+.+..-.++.+.+||..+.
T Consensus 22 ftqGL~~~~-~~--LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~-~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 22 FTEGLFYLR-GH--LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WR-DRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp CEEEEEEET-TE--EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ET-TEEEEEESSSSEEEEEETTTT
T ss_pred ccccEEEEC-CE--EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eC-CEEEEEEeeCCEEEEEECCcC
Confidence 466889986 44 566766654 89999999999998886433221 23333 22 345555667899999999999
Q ss_pred CceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc--cCCCeEEEEEcCCCCEEEEEe
Q 001352 521 GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAG 598 (1093)
Q Consensus 521 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~v~~~~~~~~l~~~~ 598 (1093)
+.+..+...... ..+++|+..|+.+. +...|.++|..+.+.++.+..... .-..++.+.+. +|..++..-
T Consensus 96 ~~~~ti~~~~~G---wglt~dg~~L~vSd----gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw 167 (243)
T 3mbr_X 96 TPRARFRYPGEG---WALTSDDSHLYMSD----GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW 167 (243)
T ss_dssp EEEEEEECSSCC---CEEEECSSCEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEeCCCCc---eEEeeCCCEEEEEC----CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC
Confidence 888877765433 33446777777653 256799999999988887765320 11244556655 554444444
Q ss_pred CCCcEEEEECCCCceEEEEecCC-----------CCCCCceEEEecCCCEEEEEEC
Q 001352 599 DDHVIKIWDMNKVQLLTTIDAGG-----------GLPENPRICFNKNGTLLAVIAN 643 (1093)
Q Consensus 599 ~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~~~~~ 643 (1093)
.+..|.+.|..+|+.+..+...+ .....+.+|++|+++.|++.+.
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 68899999999999999987442 1123478999998887777765
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.31 E-value=0.0016 Score=69.70 Aligned_cols=238 Identities=10% Similarity=-0.038 Sum_probs=144.4
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC---CceeE-EeecCC
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTY-SFEGHG 486 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~---~~~~~-~~~~h~ 486 (1093)
+|+.+.. ..|+..|+.+.+... .+ ........++|.+++.. ++++-...+.|..+++.+ +.... .+...-
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 4455444 348888988765322 22 23456789999987664 556666678999999876 22222 232222
Q ss_pred CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352 487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 566 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 566 (1093)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+... ..+.|...++..
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG- 152 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG- 152 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-
Confidence 34567777533 33455666778899999987654444444344567899999977776665431 125688888753
Q ss_pred eeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352 567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 645 (1093)
Q Consensus 567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 645 (1093)
.....+.... ......+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 153 ~~~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 153 VDIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp CCEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred CCeEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 3333332211 24678999999877776654 5678999998754333333322222234577775 355666666678
Q ss_pred eEEEEEcCCCceeeec
Q 001352 646 RIKILETPESNSVDAA 661 (1093)
Q Consensus 646 ~i~iw~~~~~~~~~~~ 661 (1093)
.|..++..+++....+
T Consensus 230 ~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcceEEE
Confidence 8998887666544443
No 280
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.31 E-value=0.019 Score=70.09 Aligned_cols=564 Identities=12% Similarity=0.064 Sum_probs=286.6
Q ss_pred CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352 336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~ 415 (1093)
..|.++.-..+|..+ .|+.+| +..||-.+ ... +. .. .......|.++.-..+| .|-.|
T Consensus 22 n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~---~~~--~~---~~----------~~~~~~~i~~i~~d~~g-~lWig 79 (758)
T 3ott_A 22 SVVSCFLQDSEGLIW--IGSNKG-LFSYDGYS---TQQ--HF---TY----------GENNNTRIYCGVIIDNT-YLYMG 79 (758)
T ss_dssp CCEEEEEECTTSCEE--EEESSC-EEEECSSC---EEE--CS---CT----------TSTTSSCEEEEEEETTT-EEEEE
T ss_pred ceEEEEEECCCCCEE--EEECCC-ccccCCCc---eEE--EE---cc----------CCCCCceEEEEEEcCCC-cEEEE
Confidence 479999999999643 445656 55666322 111 00 00 01124568888877766 55566
Q ss_pred EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEee-----cCCCCeE
Q 001352 416 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GHGAPVY 490 (1093)
Q Consensus 416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~-----~h~~~v~ 490 (1093)
+.+| +..||..+++... . .......|.++.. .+|. +..++.+ -+..+|..+++.. .+. .....|.
T Consensus 80 T~~G-l~~yd~~~~~f~~-~--~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~ 149 (758)
T 3ott_A 80 TDNG-ILVYNYRADRYEQ-P--ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIY 149 (758)
T ss_dssp ETTE-EEEEETTTTEECC-C--SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEE
T ss_pred eCCC-eEEEeCCCCEEEC-c--ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEE
Confidence 6666 8899988753211 0 1112335777654 3554 4444444 5888998776543 231 1234567
Q ss_pred EeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCC------CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352 491 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 564 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 564 (1093)
++.. +.++.+ ..++.+ -+..++..+..... +... ...|.++...+++..|..++. +-+..+|..
T Consensus 150 ~i~~--d~~g~l-Wigt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~ 219 (758)
T 3ott_A 150 SIIR--TKDNQI-YVGTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPS 219 (758)
T ss_dssp EEEE--CTTCCE-EEEETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETT
T ss_pred EEEE--cCCCCE-EEEeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCC
Confidence 6655 334444 445554 46667765543222 2111 124788888777765555542 238889988
Q ss_pred CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCC-----CCCCCceEEEecCCCEEE
Q 001352 565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA 639 (1093)
Q Consensus 565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~ 639 (1093)
+++.... .... ...|.++....++... .|+. +-+.+++..+++......... ....|.++....+|. |-
T Consensus 220 ~~~~~~~-~~l~--~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lW 293 (758)
T 3ott_A 220 TGQIKQT-EAFH--NNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IW 293 (758)
T ss_dssp TTEEEEE-EEEE--EEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EE
T ss_pred CCeEEec-cCCC--CCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EE
Confidence 7754322 2111 2458888888777554 4454 458889887765433221110 112366777777776 44
Q ss_pred EEECCCeEEEEEcCCCceeeecc-----cccccceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceec
Q 001352 640 VIANENRIKILETPESNSVDAAG-----VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVE 714 (1093)
Q Consensus 640 ~~~~dg~i~iw~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w 714 (1093)
+|+..| +.++............ .....|.++.... +|...+ |+.+| +..+
T Consensus 294 iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~----------------------~g~lWi-Gt~~G-l~~~ 348 (758)
T 3ott_A 294 LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDS----------------------KGFYWF-GGANG-LIRF 348 (758)
T ss_dssp EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECT----------------------TCCEEE-EETTE-EEEE
T ss_pred EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcC----------------------CCCEEE-eeCCc-ceee
Confidence 555556 5444322111111000 0112233333332 232222 22222 2222
Q ss_pred ceeeccCcccccccc---CccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCc
Q 001352 715 KPLFARPSECQSLLL---PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 791 (1093)
Q Consensus 715 ~~~~~~~~~~~~~~~---~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1093)
+...........+.. +.......|.++.-..+|...+ ++. +-+..|+...... ..+..
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~------------~~~~~----- 409 (758)
T 3ott_A 349 TDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQF------------IHYNI----- 409 (758)
T ss_dssp SCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEE------------EEEEE-----
T ss_pred cccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcE------------EEeec-----
Confidence 211100000000000 0011235688888888887544 443 4566665432211 00000
Q ss_pred eeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeEEEEEccCc-----eeE---EEEC---C-CCCCeEEEEEcCCCCCE
Q 001352 792 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----KTI---LTIM---P-PSPTATSLAFNPHDNNV 859 (1093)
Q Consensus 792 ~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~-----~~~---~~~~---~-~~~~i~~l~~s~~d~~~ 859 (1093)
...........|.++...++|.+.+....+.+.++|..+. ... ..+. + ....|.++...+ ++.+
T Consensus 410 ---~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~l 485 (758)
T 3ott_A 410 ---VDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNV 485 (758)
T ss_dssp ---ECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCE
T ss_pred ---CCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCE
Confidence 0000000234688888888888776555667888886531 111 1221 1 223588999988 7776
Q ss_pred EEEEeCCCeEEEEEcCCcceeeecc-c--ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccC
Q 001352 860 IAIGMDDSTILIYNARSSEVISKLE-G--HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 936 (1093)
Q Consensus 860 lasg~~dg~i~iwd~~~~~~~~~l~-~--h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 936 (1093)
.+.++..+-+..+|..+++...... . ....+.++....+|.+.+. +..| |..++..+++... .. ..+-.
T Consensus 486 Wi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~---~~-~~gl~-- 557 (758)
T 3ott_A 486 WVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQS---IS-FGSFS-- 557 (758)
T ss_dssp EEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCB---CC-CCC----
T ss_pred EEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEE---ec-ccCCC--
Confidence 6533444558889988765443221 1 1346788888888877765 4455 8888877654322 11 11111
Q ss_pred CCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCCEEEEEE-ccCCCEEEEEeCCCcEEEEEcC
Q 001352 937 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATF-SCDCRMVFTSFVDGTLSIHEAS 1009 (1093)
Q Consensus 937 ~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~f-s~dg~~l~t~~~dg~v~vwd~~ 1009 (1093)
...|.++... +|.+.+++ ++.+..+|..+.+...--.. ...+....+ .+||. |..|+.+|. ..++..
T Consensus 558 ~~~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~-l~fG~~~Gl-~~f~p~ 625 (758)
T 3ott_A 558 NNEILSMTCV-KNSIWVST-TNGLWIIDRKTMDARQQNMT--NKRFTSLLFDPKEDC-VYLGGADGF-GISHSN 625 (758)
T ss_dssp -CCEEEEEEE-TTEEEEEE-SSCEEEEETTTCCEEEC--C--CCCCSEEEEETTTTE-EEEECBSEE-EEEEC-
T ss_pred ccceEEEEEC-CCCEEEEC-CCCeEEEcCCCceeEEecCC--CCceeeeEEECCCCc-EEEecCCce-EEEChh
Confidence 1347777664 66555544 55688889887654321111 122333344 35665 555777774 455554
No 281
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.28 E-value=0.0018 Score=70.49 Aligned_cols=249 Identities=10% Similarity=-0.041 Sum_probs=153.0
Q ss_pred CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCc
Q 001352 398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 477 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~ 477 (1093)
+..+|.+..++ .+|+.+.. ..|+..++.+... . .+......+..++|.+.+.. ++++-...+.|..+++..+.
T Consensus 34 d~~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~-~---~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 34 DRRSCKALGPE-PVLLFANR-IDIRQVLPHRSEY-T---LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TSSCEEESSSC-CEEEEECB-SCEEEECTTSCCE-E---EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred CCCcccccccC-ceeEeecc-cceEEEeCCCCee-E---EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCC
Confidence 34456666663 45554433 3477788766432 1 12223345789999987664 45566677889999987765
Q ss_pred eeEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCcee
Q 001352 478 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 557 (1093)
Q Consensus 478 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 557 (1093)
....+.........+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+...... ...
T Consensus 107 ~~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~ 183 (349)
T 3v64_C 107 VEEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPR 183 (349)
T ss_dssp CEEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCE
T ss_pred ceEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCE
Confidence 44433333334566777543 345566666778999999876554444444445678999999777777654321 267
Q ss_pred EEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC
Q 001352 558 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 636 (1093)
Q Consensus 558 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 636 (1093)
|..+++............ ......++++|++..|+.+. ..+.|..+|+........+... ......+++ .++.
T Consensus 184 I~r~~~dG~~~~~~~~~~---~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ 257 (349)
T 3v64_C 184 IEASSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDS 257 (349)
T ss_dssp EEEEETTSCSCEESCCSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTE
T ss_pred EEEEeCCCCCcEEEEECC---CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCE
Confidence 888887643322222211 24578999998777776654 5678999998754433333322 223467777 3455
Q ss_pred EEEEEECCCeEEEEEcCCCceeeecc
Q 001352 637 LLAVIANENRIKILETPESNSVDAAG 662 (1093)
Q Consensus 637 ~l~~~~~dg~i~iw~~~~~~~~~~~~ 662 (1093)
++++-...+.|..++..++.....+.
T Consensus 258 ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 258 LYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEecCCCCeEEEEEccCCCccEEec
Confidence 55666667888888866665544443
No 282
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.26 E-value=0.001 Score=73.60 Aligned_cols=247 Identities=11% Similarity=-0.040 Sum_probs=152.7
Q ss_pred eEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee
Q 001352 400 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 479 (1093)
Q Consensus 400 V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~ 479 (1093)
-.|.+..+ ..+|+.+.. ..|+..++.++.... +......+..++|.+.+.. ++++-...+.|..+++..+...
T Consensus 79 ~~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 79 RSCKALGP-EPVLLFANR-IDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SCEEECSS-CCEEEEECB-SCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEE
T ss_pred CeECCccc-cceeEeecC-ccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcE
Confidence 34555555 345555444 458888887654221 2223345789999987664 4556667789999998776544
Q ss_pred EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEE
Q 001352 480 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 559 (1093)
Q Consensus 480 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 559 (1093)
..+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+...... ...|+
T Consensus 152 ~~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~--~~~I~ 228 (386)
T 3v65_B 152 EVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPRIE 228 (386)
T ss_dssp EEECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS--SCEEE
T ss_pred EEEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC--CCEEE
Confidence 433323334456676543 345556666678898888876554444444445678999999887777664321 36788
Q ss_pred EEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE
Q 001352 560 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 638 (1093)
Q Consensus 560 iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 638 (1093)
.+++............ ......++++|++..|+.+ +..+.|..+|+........+... ......+++ .++.++
T Consensus 229 r~~~dG~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly 302 (386)
T 3v65_B 229 ASSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLY 302 (386)
T ss_dssp EEETTSCSCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEE
T ss_pred EEeCCCCCcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEE
Confidence 8887654332222221 2457899999877777665 45678999998754443333322 233467777 445566
Q ss_pred EEEECCCeEEEEEcCCCceeeecc
Q 001352 639 AVIANENRIKILETPESNSVDAAG 662 (1093)
Q Consensus 639 ~~~~~dg~i~iw~~~~~~~~~~~~ 662 (1093)
++-...+.|..++..++.....+.
T Consensus 303 ~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 303 WTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEE
T ss_pred EeeCCCCeEEEEECCCCcceEEEc
Confidence 666667888888866665555444
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.26 E-value=0.0021 Score=68.91 Aligned_cols=232 Identities=9% Similarity=-0.054 Sum_probs=139.8
Q ss_pred CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-EcCCEEEEEEccCC---Cccc
Q 001352 358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGG---SDAR 433 (1093)
Q Consensus 358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-~~d~~i~iwd~~~~---~~~~ 433 (1093)
..|+..|+.+++.... + .....+..++|++++..|..+ ...+.|..+++.+. ....
T Consensus 10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~ 69 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD 69 (316)
T ss_dssp SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence 6789999887764432 1 133567899999877666555 45688999998762 2112
Q ss_pred ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEecC-CeE
Q 001352 434 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI 512 (1093)
Q Consensus 434 ~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i 512 (1093)
. .+...-.....+++.+.+.. ++++-...+.|.+.+.........+.........+++.+. ++.++++.... +.|
T Consensus 70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I 145 (316)
T 1ijq_A 70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI 145 (316)
T ss_dssp E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence 1 12222234578999876654 4566667889999997654433333333456678888543 33344444333 688
Q ss_pred EEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCC
Q 001352 513 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 592 (1093)
Q Consensus 513 ~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~ 592 (1093)
...+++...........-.....+++++++..|+.+-. ..+.|..+|..... .+.+............+++. .+.
T Consensus 146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ 220 (316)
T 1ijq_A 146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDK 220 (316)
T ss_dssp EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTE
T ss_pred EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCE
Confidence 88887654433333333456789999998888877653 25579999987433 33332211011345677774 344
Q ss_pred EEEEEeCCCcEEEEECCCCceEEEEe
Q 001352 593 QILAAGDDHVIKIWDMNKVQLLTTID 618 (1093)
Q Consensus 593 ~l~~~~~dg~i~iwd~~~~~~~~~~~ 618 (1093)
.+++-...+.|..++..+++.+..+.
T Consensus 221 ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCeEEEEeCCCCcceEEEe
Confidence 44555567788888887776665554
No 284
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.22 E-value=0.00094 Score=67.82 Aligned_cols=216 Identities=13% Similarity=0.123 Sum_probs=132.0
Q ss_pred EECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeeccc-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 001352 839 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 917 (1093)
Q Consensus 839 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~ 917 (1093)
.+.+-...+..++++|+++++.++...++.|...|.. ++.+.++.- -....-.+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4555556899999999555666778889999999998 887777631 22457889999998877776677889999887
Q ss_pred CCce-eeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCC---cceeeeee------cCCCCCEEEEE
Q 001352 918 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQWF------PISSVPISQAT 986 (1093)
Q Consensus 918 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~---~~~~~~~~------~~h~~~v~~~~ 986 (1093)
.... ..........+..........++++|+++.|.++ ......||.+.. ...+.... ..+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6442 1112222111111112458999999999777774 333444554431 11111110 11244678899
Q ss_pred EccC-CCEEEEEeCCCcEEEEEcCCCceEEEecccc-ccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEe
Q 001352 987 FSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILSTA-YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1060 (1093)
Q Consensus 987 fs~d-g~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~ 1060 (1093)
|.|. |++++.....+.+.++|.. |+.+..+.... .... ....-.+--++++| +|+++++ ++-+.++.+.
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l--~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGL--SHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGC--SSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCc--ccccCCCCeeEECC-CCCEEEE-cCCceEEEEE
Confidence 9985 4556666667788889976 45555554331 1110 01112345588998 4765554 7777666554
No 285
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.21 E-value=0.00027 Score=86.04 Aligned_cols=201 Identities=6% Similarity=-0.038 Sum_probs=113.6
Q ss_pred CCCC-CeEEEEEC-CCCCEEEEEEcC-----CEEEEEEccCC-CcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-
Q 001352 395 DPGV-SVNRVVWS-PDGSLLGVAYSK-----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD- 465 (1093)
Q Consensus 395 ~h~~-~V~~v~~s-~dg~~las~~~d-----~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d- 465 (1093)
+|.- .+...+|| |||++||.+... .+|+++|+.++ +.+.. .+. .....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCCE--EEEEEECC
Confidence 4443 78899999 999999976442 25999999998 63321 111 12356899999985 3333333
Q ss_pred ----CcEEEEECCCCcee--EEeec-CCCCeEEeeecccCCccEEEEEecC---CeEEEEEcCCCC-ce--EEec-CCCC
Q 001352 466 ----KTIKVWDAVTGSRT--YSFEG-HGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLG-AR--VDYD-APGL 531 (1093)
Q Consensus 466 ----~~i~vwd~~~~~~~--~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~-~~--~~~~-~~~~ 531 (1093)
..|.++++.++... ..+.. .......+.| ++||++|+..+.+ ..|.++|+.+.. .. ..+. ....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 35888898887532 23322 2233445556 5577777766533 358888887653 22 2232 2233
Q ss_pred ceEEEEEccCCCEEEEEecCC-CCceeEEEEeCCCCeeeee-eecccccCCCeEEEEEcCCCCEE-EEEeCCCc--EEEE
Q 001352 532 GCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKIW 606 (1093)
Q Consensus 532 ~v~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l-~~~~~dg~--i~iw 606 (1093)
...++.|+ +|..|+..+... .+...|+.+++.++..... +..+. ....+..+.+. ++.+ ++...++. |.++
T Consensus 321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETTEEEEEEE
T ss_pred ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 34444443 366666555432 2456788899876322222 22222 01234555554 4455 44666775 4555
Q ss_pred EC
Q 001352 607 DM 608 (1093)
Q Consensus 607 d~ 608 (1093)
++
T Consensus 397 dl 398 (751)
T 2xe4_A 397 MA 398 (751)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.17 E-value=0.0034 Score=69.60 Aligned_cols=239 Identities=10% Similarity=-0.025 Sum_probs=148.9
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC----ceeEEeecCC
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 486 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~h~ 486 (1093)
+|+.+. ...|+..++.+.... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~----~~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCccee----EeccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 454443 467888888875422 22234557889999987664 4555566788999998652 2223333334
Q ss_pred CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352 487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 566 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 566 (1093)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..... ....|...++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence 55677777543 34566666678899999887665555554444567899999977777665421 1356888887654
Q ss_pred eeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352 567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 645 (1093)
Q Consensus 567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 645 (1093)
......... ......+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 236 ~~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 236 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred ccEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 333332222 24678999998888777764 5678999998765544444332222334566663 344555556678
Q ss_pred eEEEEEcCCCceeeecc
Q 001352 646 RIKILETPESNSVDAAG 662 (1093)
Q Consensus 646 ~i~iw~~~~~~~~~~~~ 662 (1093)
.|..++..++.....+.
T Consensus 312 ~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLA 328 (400)
T ss_dssp SEEEEESSSCCCCEEEE
T ss_pred eEEEEEcCCCCceEEEe
Confidence 88888876665555544
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.16 E-value=0.00048 Score=77.27 Aligned_cols=246 Identities=11% Similarity=0.036 Sum_probs=143.7
Q ss_pred CeeEEEEccC--CCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCC---C-eEEEEEcCCc
Q 001352 805 AVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSS 877 (1093)
Q Consensus 805 ~v~~l~~s~d--g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g-~i~iwd~~~~ 877 (1093)
....++++|+ +..|.++. .+.|+.+|..++..... .........+++++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 3568999985 44454454 48899999987766544 33556789999999 77754443321 1 2333333222
Q ss_pred cee-eecccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE
Q 001352 878 EVI-SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 955 (1093)
Q Consensus 878 ~~~-~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 955 (1093)
... ..+. .......+++.| +|.+.++-..++.|+.++..++.... ....... . .....++|+|+|+.|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~-~~~~~~~--~---~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTE-EEVMMDT--K---GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEE-EEEECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEE-EEeccCC--C---CCcccEEEeCCCCEEEEE
Confidence 110 1111 223456688999 67777666677889999998665411 1111111 1 123479999999966664
Q ss_pred --eCCeEEEEEcC--Cccee--eeeec--C------------CCCCEEEEEE---------ccCCCEEEEEeCCCcEEEE
Q 001352 956 --HETHLAIYEAE--ELTCL--KQWFP--I------------SSVPISQATF---------SCDCRMVFTSFVDGTLSIH 1006 (1093)
Q Consensus 956 --~d~~i~vwd~~--~~~~~--~~~~~--~------------h~~~v~~~~f---------s~dg~~l~t~~~dg~v~vw 1006 (1093)
..+.|..++.. ++... ..+.. + .-.....+++ .++|.++++-...++|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45689998865 33211 11111 0 0124677999 7778777777777889999
Q ss_pred EcCCCceEEEecccccc-CCCC-------CCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352 1007 EASNLEVQCRILSTAYL-RPTT-------SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus 1007 d~~~~~~~~~~~~~~~~-~~~~-------~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
+. +|... .+...... ..+. ...--.|..++++|.++.++++=...+.|+.+++
T Consensus 371 ~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 371 TP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp CT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 85 55443 33211110 0000 0111247788999545676666666778888876
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=0.00056 Score=76.76 Aligned_cols=245 Identities=12% Similarity=0.037 Sum_probs=142.0
Q ss_pred CeeEEEEcc-CCCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeC-CC----eEEEEEcCCc
Q 001352 805 AVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARSS 877 (1093)
Q Consensus 805 ~v~~l~~s~-dg~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg----~i~iwd~~~~ 877 (1093)
....++++| ++..|.++. .+.|+.+|+.++....... .......++|++ ++++|+++.. ++ .+.+++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 456889998 455566655 4789999998766544433 556788999999 7885555554 22 3444443 34
Q ss_pred cee--eecccccCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEE
Q 001352 878 EVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 954 (1093)
Q Consensus 878 ~~~--~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 954 (1093)
... ..+.. ......++++| +|.++++-..++.|..++..++.... ....... .....++|+|+|++|.+
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEEE
Confidence 322 22221 23456789999 77777776678889999998754321 1222111 24678999999996666
Q ss_pred E--eCCeEEEEEcCC--cce--eeeeec--C------------CCCCEE-EEEEc--------cCCCEEEEEeCCCcEEE
Q 001352 955 V--HETHLAIYEAEE--LTC--LKQWFP--I------------SSVPIS-QATFS--------CDCRMVFTSFVDGTLSI 1005 (1093)
Q Consensus 955 ~--~d~~i~vwd~~~--~~~--~~~~~~--~------------h~~~v~-~~~fs--------~dg~~l~t~~~dg~v~v 1005 (1093)
+ ..+.|..++... +.. +..+.. + .-.... .++.. ++|.++++-...++|+.
T Consensus 287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 4 567899887653 221 111110 0 011223 45553 34666666566678888
Q ss_pred EEcCCCceEEEecccc-ccCC------CCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352 1006 HEASNLEVQCRILSTA-YLRP------TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus 1006 wd~~~~~~~~~~~~~~-~~~~------~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
++ ..|.......... .... .....--.|..++++|+++.++++-...+.|+.+++
T Consensus 367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 88 4564443322100 0000 000011257788999854566666566678888776
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.16 E-value=0.0048 Score=66.38 Aligned_cols=281 Identities=12% Similarity=0.028 Sum_probs=147.4
Q ss_pred CCceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352 336 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 336 ~~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~ 415 (1093)
..+.+|.|.+++. ++++|. .|.| +...+.|+.=...... .......+.+|+|++ +..++ +
T Consensus 36 ~~~~~v~~~~~~~-~~~~G~-~g~i-~~s~DgG~tW~~~~~~---------------~~~~~~~~~~i~~~~-~~~~~-~ 95 (327)
T 2xbg_A 36 ATILDMSFIDRHH-GWLVGV-NATL-METRDGGQTWEPRTLV---------------LDHSDYRFNSVSFQG-NEGWI-V 95 (327)
T ss_dssp SCEEEEEESSSSC-EEEEET-TTEE-EEESSTTSSCEECCCC---------------CSCCCCEEEEEEEET-TEEEE-E
T ss_pred CcEEEEEECCCCc-EEEEcC-CCeE-EEeCCCCCCCeECCCC---------------CCCCCccEEEEEecC-CeEEE-E
Confidence 3799999988887 466654 5544 3334444321110000 112345788999976 44444 4
Q ss_pred EcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEE-eecCCCCeEEeee
Q 001352 416 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCP 494 (1093)
Q Consensus 416 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~ 494 (1093)
+..+.|.. ....|+.-........+.+.+..+.+.+++. +++.+. ++.|.. ....|+.-.. ...+...+..+.+
T Consensus 96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~ 170 (327)
T 2xbg_A 96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNR 170 (327)
T ss_dssp EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEE
T ss_pred ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEE
Confidence 56664433 3344543332211112345678888877776 455544 554432 2233433222 2345566788877
Q ss_pred cccCCccEEEEEecCCeEEEEEcCCCCce-EEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeee
Q 001352 495 HAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 573 (1093)
Q Consensus 495 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 573 (1093)
.+ ++.+++.+...+..+-+|-. +..- .........+..+++.++++.++++. .+.+++.+...|+.-..+.
T Consensus 171 ~~--~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~ 242 (327)
T 2xbg_A 171 SP--SGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELL 242 (327)
T ss_dssp CT--TSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCB
T ss_pred cC--CCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEecc
Confidence 54 45566555443333333321 1111 11123345788899999988776553 3446665433344333322
Q ss_pred cc-cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecC-CCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001352 574 GL-QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILE 651 (1093)
Q Consensus 574 ~~-~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 651 (1093)
.. ......+..+.+.+++..+++ +.+|.+ .+....|+.-..+... .....+..+.|.+++. +++++.+|.|.-++
T Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 243 SPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp CTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 11 001235788999887665554 456766 4555556555444422 1123578898986554 66666788776655
Q ss_pred c
Q 001352 652 T 652 (1093)
Q Consensus 652 ~ 652 (1093)
-
T Consensus 320 ~ 320 (327)
T 2xbg_A 320 T 320 (327)
T ss_dssp C
T ss_pred C
Confidence 3
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.01 E-value=0.0092 Score=66.14 Aligned_cols=250 Identities=8% Similarity=-0.058 Sum_probs=150.3
Q ss_pred eeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-Ec
Q 001352 339 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YS 417 (1093)
Q Consensus 339 ~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-~~ 417 (1093)
.|.+..+.. +|+++. ...|+..++.+..... +...-..+..++|++.+..|..+ ..
T Consensus 76 ~C~~~~~~~-~ll~~~--~~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~ 132 (400)
T 3p5b_L 76 ACKAVGSIA-YLFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLS 132 (400)
T ss_dssp SCCCSTTSC-EEEEEE--TTEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETT
T ss_pred ceeeccccc-eeEEec--cceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecC
Confidence 344444433 444443 3678888887765432 11234678899999976666655 45
Q ss_pred CCEEEEEEccCCCccc-ceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecc
Q 001352 418 KHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 496 (1093)
Q Consensus 418 d~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 496 (1093)
.+.|..+++.+..... ....+.........+++.+.+.. ++++-...+.|.+.++........+...-.....+++.+
T Consensus 133 ~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp 211 (400)
T 3p5b_L 133 QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 211 (400)
T ss_dssp TTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEET
T ss_pred CCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEec
Confidence 6789999887632100 11122334456778999985554 556666778999999876554444443445577888865
Q ss_pred cCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecc
Q 001352 497 KENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 575 (1093)
Q Consensus 497 ~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 575 (1093)
.. +.+.++-.. .+.|...+++...........-.....+++++++..|+.+-. ....|..+|+............
T Consensus 212 ~~-g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~ 287 (400)
T 3p5b_L 212 VH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDE 287 (400)
T ss_dssp TT-TEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECS
T ss_pred cc-CeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCC
Confidence 43 334444322 477888888765554444444456789999998888887743 2557999998654433333321
Q ss_pred cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEe
Q 001352 576 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 618 (1093)
Q Consensus 576 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 618 (1093)
. .......+++. .+..+++-...+.|..+|..+|+.+..+.
T Consensus 288 ~-~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 288 K-RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp S-TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred C-CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 1 11345566663 23344455567788888877777666654
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.96 E-value=0.0077 Score=64.24 Aligned_cols=233 Identities=12% Similarity=0.004 Sum_probs=141.9
Q ss_pred CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-EcCCEEEEEEccCCCcccce
Q 001352 357 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQ 435 (1093)
Q Consensus 357 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~-~~d~~i~iwd~~~~~~~~~~ 435 (1093)
...|+..++.+........ +. .-..+.+++|.+.+..|..+ ...+.|..++..++.....
T Consensus 12 ~~~I~~i~l~~~~~~~~~~-----------------~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~- 72 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIV-----------------VG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN- 72 (318)
T ss_dssp EEEEEEEETTCTTSCCEEE-----------------EE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred cCeEEEEECCCCceEEEEE-----------------ec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence 4679999988764211100 11 12356789999865555544 5667899999887642221
Q ss_pred EEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccCCccEEEEEe--cCCeEE
Q 001352 436 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIK 513 (1093)
Q Consensus 436 ~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~i~ 513 (1093)
.+...-.....+++.+.+.. ++++-...+.|.++++........+.........+++.+.. + .|+.+. ..+.|.
T Consensus 73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~-g-~ly~td~~~~~~I~ 148 (318)
T 3sov_A 73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS-G-FMYWTDWGEVPKIE 148 (318)
T ss_dssp -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG-T-EEEEEECSSSCEEE
T ss_pred -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC-C-EEEEEecCCCCEEE
Confidence 12222234667899876554 55666667899999976543333333344556788886542 3 444444 357788
Q ss_pred EEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCE
Q 001352 514 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 593 (1093)
Q Consensus 514 vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~ 593 (1093)
..+++...........-.....+++++++..|+.+-. ..+.|..+|+..........+.. .....+++.. +..
T Consensus 149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~l 221 (318)
T 3sov_A 149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DIL 221 (318)
T ss_dssp EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEE
T ss_pred EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEE
Confidence 8887654443333333445689999998888877643 25679999986433322222222 4556777753 344
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEec
Q 001352 594 ILAAGDDHVIKIWDMNKVQLLTTIDA 619 (1093)
Q Consensus 594 l~~~~~dg~i~iwd~~~~~~~~~~~~ 619 (1093)
+++-...+.|..++..+|+....+..
T Consensus 222 ywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEEecCCCeEEEEECCCCCceEEEeC
Confidence 44555678899999888877666653
No 292
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.96 E-value=0.0037 Score=70.02 Aligned_cols=155 Identities=15% Similarity=0.097 Sum_probs=96.5
Q ss_pred CceeeeecC-CCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE
Q 001352 337 SPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 415 (1093)
Q Consensus 337 ~V~~~~~sp-dg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~ 415 (1093)
....++++| ++..|.++-.. +.|+.+|..++.... +.........++|+++|++|.++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyva 196 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMIIT 196 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEEE
Confidence 678999998 45545554433 889999988765432 11244568899999999977666
Q ss_pred EcC----C-EEEEEEccCCCcccceEEeccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECCCCceeEEeec-CCCC
Q 001352 416 YSK----H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP 488 (1093)
Q Consensus 416 ~~d----~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~-h~~~ 488 (1093)
... . .+.+.+.. +.... ...+.. ......++++| +|. ++++-..++.|..++..++........ ....
T Consensus 197 d~~~~~~~~~v~~~~~~-g~~~~-~~~l~~-~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~ 271 (430)
T 3tc9_A 197 NDQNNNDRPNNYILTRE-SGFKV-ITELTK-GQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW 271 (430)
T ss_dssp ECCSCTTSEEEEEEEGG-GTSCS-EEEEEE-CSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSSC
T ss_pred eCCCCcccceEEEEeCC-Cceee-eeeecc-CCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCCc
Confidence 541 2 34444443 33221 112221 23356788999 565 666666778999999887664222221 2234
Q ss_pred eEEeeecccCCcc-EEEEEecCCeEEEEEcCC
Q 001352 489 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDS 519 (1093)
Q Consensus 489 v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~ 519 (1093)
...+++++ ++. ++++-...+.|..++.+.
T Consensus 272 P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 272 EFHIQFHP--SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp CEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred ceeEEEcC--CCCEEEEEECCCCEEEEEeCCc
Confidence 66788854 556 455556678899988764
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.90 E-value=0.016 Score=61.69 Aligned_cols=239 Identities=9% Similarity=-0.015 Sum_probs=145.2
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCcee-EEeecCCCCe
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPV 489 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~-~~~~~h~~~v 489 (1093)
+|+.+. ...|+..++.+...... ..+ .....+..++|.+.+.. ++++-...+.|..+++..+... ..+...-...
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~-~~~-~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENAT-IVV-GGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCE-EEE-EEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred EEEEEc-cCeEEEEECCCCceEEE-EEe-cCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 344443 45689999987641111 112 22335678999986654 5566667788999998776432 2222222345
Q ss_pred EEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeee
Q 001352 490 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 569 (1093)
Q Consensus 490 ~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 569 (1093)
..+++.+. ++.+.++-...+.|.+++++.................+++.|.+..|+.+... ....|+..++.... .
T Consensus 82 ~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~-~ 157 (318)
T 3sov_A 82 DGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSS-R 157 (318)
T ss_dssp CEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCS-C
T ss_pred cEEEEEcC-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCC-e
Confidence 56776533 34566666677899999987655444444445567899999977776665421 14568888876432 2
Q ss_pred eeeecccccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001352 570 RTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 648 (1093)
Q Consensus 570 ~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 648 (1093)
..+.... -.....+++++++..|+.+ +..+.|..+|+........... .......+++.. +.++.+-...+.|.
T Consensus 158 ~~~~~~~--l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~ 232 (318)
T 3sov_A 158 FIIINSE--IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSIL 232 (318)
T ss_dssp EEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred EEEEECC--CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEE
Confidence 2222111 2457899999977777665 4678899999875443333321 123346677753 44555555678899
Q ss_pred EEEcCCCceeeecc
Q 001352 649 ILETPESNSVDAAG 662 (1093)
Q Consensus 649 iw~~~~~~~~~~~~ 662 (1093)
.++..+++....+.
T Consensus 233 ~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 233 ACNKYTGEGLREIH 246 (318)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEECCCCCceEEEe
Confidence 89887665544443
No 294
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.89 E-value=0.003 Score=70.76 Aligned_cols=238 Identities=15% Similarity=0.074 Sum_probs=135.2
Q ss_pred CceeeeecCC---CceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEE
Q 001352 337 SPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 413 (1093)
Q Consensus 337 ~V~~~~~spd---g~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~la 413 (1093)
....++|+|+ |. |+++ ...+.|+.+|..++.... +.+.......++|+++|++++
T Consensus 140 ~P~gvavd~~s~~g~-Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV 197 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDD-LYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV 197 (433)
T ss_dssp CCCEEEECTTTTTCE-EEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred CCceEEEccccCCCE-EEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence 5789999995 54 4444 333899999998876553 222345689999999999444
Q ss_pred EEEcC---C-EEEEEEccCCCcccceEEeccccccEEEEEeeC-CCCcEEEEEEcCCCcEEEEECCCCceeEEe-ec-CC
Q 001352 414 VAYSK---H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG-HG 486 (1093)
Q Consensus 414 s~~~d---~-~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~-h~ 486 (1093)
+.... . .+...+...+. .. ...+. .-.....+++.| +|. ++++-..++.|+.+|..++.....+ .. ..
T Consensus 198 ad~~~~~~~~gv~~~~~~~~~-~~-~~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~ 272 (433)
T 4hw6_A 198 VDDQSSDTNTGIYLFTRASGF-TE-RLSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK 272 (433)
T ss_dssp EECCSCTTSEEEEEECGGGTT-CC-EEEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred EcCCCCcccceEEEEECCCCe-ec-ccccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence 43311 2 24444443322 11 01121 223456788999 565 5566667788999998878763333 21 12
Q ss_pred CCeEEeeecccCCcc-EEEEEecCCeEEEEEcCCCCc----eEEecCC---------------CCceEEEEE--------
Q 001352 487 APVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCTRMAY-------- 538 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~----~~~~~~~---------------~~~v~~~~~-------- 538 (1093)
..-..+++++ ++. +.++-...+.|+.++++.... ...+.+. -.....+++
T Consensus 273 ~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~ 350 (433)
T 4hw6_A 273 GSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAG 350 (433)
T ss_dssp SSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTT
T ss_pred CCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccc
Confidence 2234577754 555 455555678899988763211 1111111 113456888
Q ss_pred -ccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccc---------------cCCCeEEEEEc-CCCCEEEEEeCCC
Q 001352 539 -SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------QHNSVSVVHFD-TAKDQILAAGDDH 601 (1093)
Q Consensus 539 -s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------~~~~v~~v~~~-~~~~~l~~~~~dg 601 (1093)
.++|.+.++-.. ...|+.++. +|.. .++.+... .......++++ +++..+++-..++
T Consensus 351 dd~~g~lyvaD~~----n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 424 (433)
T 4hw6_A 351 EEDEYDFYFCDRD----SHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH 424 (433)
T ss_dssp SSCCEEEEEEETT----TTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred cCCCCcEEEEECC----CCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence 666665555332 567888885 5543 33332210 11346678888 4555444445566
Q ss_pred cEEEEECC
Q 001352 602 VIKIWDMN 609 (1093)
Q Consensus 602 ~i~iwd~~ 609 (1093)
.|+.++++
T Consensus 425 rIr~i~~e 432 (433)
T 4hw6_A 425 RVRKIAPE 432 (433)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecC
Confidence 77776653
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.87 E-value=0.0051 Score=64.71 Aligned_cols=194 Identities=12% Similarity=0.161 Sum_probs=123.7
Q ss_pred CCEEEEEe-CCeEEEEEccCceeEEEECCCCCCeEEEEEcCCC----CC---EEEEEeC---CCeEEEEEcC--Ccceee
Q 001352 815 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD----NN---VIAIGMD---DSTILIYNAR--SSEVIS 881 (1093)
Q Consensus 815 g~~la~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d----~~---~lasg~~---dg~i~iwd~~--~~~~~~ 881 (1093)
..+++... .+.+.+||+ +|+.++.+.. +.+..+.+-| + ++ ++++... +++|.+|++. +++ +.
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 34444333 578999999 8999988863 5677777665 2 22 2333333 5799999773 333 44
Q ss_pred eccc------cc-CCeEEEEE--eCC-CC-EEEEEeCCCcEEEEeCCC---CceeeeeeeecCCCcccCCCCceEEEEcc
Q 001352 882 KLEG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHK 947 (1093)
Q Consensus 882 ~l~~------h~-~~V~~l~~--s~d-g~-~l~s~s~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 947 (1093)
.+.. .. ..+..+++ +|. ++ +++....+|.+..|++.. +.. ..+.++.+.-. ..+..++..+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~-~~~lVR~f~lg----sq~EgcvvDd 189 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI-SGKKVRAFKMN----SQTEGMAADD 189 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE-EEEEEEEEECS----SCEEEEEEET
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc-cceEEEEecCC----CCcceEEEcC
Confidence 3321 11 55677887 774 44 577788899999999943 222 22333332221 2578899999
Q ss_pred CCCEEEEEeC-CeEEEEEcC-----CcceeeeeecCC-CCCEEEEEE--ccCCC-EEEEEe-CCCcEEEEEcC-CCceEE
Q 001352 948 DQTRFLLVHE-THLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQC 1015 (1093)
Q Consensus 948 dg~~l~~~~d-~~i~vwd~~-----~~~~~~~~~~~h-~~~v~~~~f--s~dg~-~l~t~~-~dg~v~vwd~~-~~~~~~ 1015 (1093)
....|.++.+ ..|..|+.+ +++.+..+-.++ ...+..|++ .++|+ ||++++ .+.+..|||.. +.+.+.
T Consensus 190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 8888888754 456666644 344554433333 346888887 56666 666666 56799999997 778888
Q ss_pred Eec
Q 001352 1016 RIL 1018 (1093)
Q Consensus 1016 ~~~ 1018 (1093)
+|.
T Consensus 270 ~f~ 272 (355)
T 3amr_A 270 DFR 272 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 296
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.84 E-value=0.016 Score=69.77 Aligned_cols=238 Identities=10% Similarity=-0.023 Sum_probs=144.9
Q ss_pred EEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCC----ceeEEeecCC
Q 001352 411 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 486 (1093)
Q Consensus 411 ~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~----~~~~~~~~h~ 486 (1093)
+|+.+. ...|+..++...... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred cccccc-ccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 444443 344788887765422 22334556789999986664 5566666788999998753 2233333234
Q ss_pred CCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001352 487 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 566 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 566 (1093)
.....|++.+. .+.+.++-...+.|.+.+++.......+.........|++.|.+.+|+...... ...|...++...
T Consensus 471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~--~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT--PAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS--SCEEEEEETTSC
T ss_pred CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC--CCeEEEEecCCC
Confidence 45667777543 235666667788999999886655444444445678999999877776654211 256888887654
Q ss_pred eeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCC
Q 001352 567 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 645 (1093)
Q Consensus 567 ~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 645 (1093)
.....+... ......|++++.+..|+.+. ..+.|...++........+...........|++.. +.++++-...+
T Consensus 548 ~~~~lv~~~---l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~ 623 (791)
T 3m0c_C 548 DIYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE 623 (791)
T ss_dssp CEEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTT
T ss_pred ceEEEEeCC---CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCC
Confidence 443333322 25688999998877777764 56789999987655555444332222334555533 33444444567
Q ss_pred eEEEEEcCCCceeeec
Q 001352 646 RIKILETPESNSVDAA 661 (1093)
Q Consensus 646 ~i~iw~~~~~~~~~~~ 661 (1093)
.|...+..++..+..+
T Consensus 624 ~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 624 AIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred EEEEEeCCCCcceEEe
Confidence 7888877666554444
No 297
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.80 E-value=0.0056 Score=64.42 Aligned_cols=193 Identities=12% Similarity=0.134 Sum_probs=120.0
Q ss_pred EEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecccC--Ccc---EEEEE-ec--CCeEEEEEcCCCC-ceEEecC
Q 001352 458 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE--NIH---FIFSI-SV--DGKIKAWLYDSLG-ARVDYDA 528 (1093)
Q Consensus 458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~---~l~s~-~~--dg~i~vwd~~~~~-~~~~~~~ 528 (1093)
++++...++-+.+||+ +|+.++.+.. +.++.+.+.+.- +++ ++++. -. +++|.+|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666666788999998 9999998864 556666554310 111 22333 33 5789999875322 2333311
Q ss_pred ------CC-CceEEEEE--ccC-CC-EEEEEecCCCCceeEEEEeC-------CCCeeeeeeecccccCCCeEEEEEcCC
Q 001352 529 ------PG-LGCTRMAY--SAN-GR-RLFSCGTSKEGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHFDTA 590 (1093)
Q Consensus 529 ------~~-~~v~~~~~--s~d-~~-~l~~~~~~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~v~~~~~ 590 (1093)
.. ..+..+|+ +|. ++ ++++... ++.+..|++ .+++.++++... ..+..|...+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence 11 45666777 774 44 3444433 456878777 234566666653 46888999999
Q ss_pred CCEEEEEeCCCcEEEEECC-----CCceEEEEecCCCCCCCceEEE--ecCCC-EEEEEE-CCCeEEEEEcC-CCceeee
Q 001352 591 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICF--NKNGT-LLAVIA-NENRIKILETP-ESNSVDA 660 (1093)
Q Consensus 591 ~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~~~-~l~~~~-~dg~i~iw~~~-~~~~~~~ 660 (1093)
..+|+.+-++..|..++.+ +++.+..+....-...+..+++ .++++ +|++.+ .++++.+|+.. +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 9999999999877777755 3445555433222234677777 45555 566665 57799999996 4444444
Q ss_pred c
Q 001352 661 A 661 (1093)
Q Consensus 661 ~ 661 (1093)
+
T Consensus 271 f 271 (355)
T 3amr_A 271 F 271 (355)
T ss_dssp E
T ss_pred E
Confidence 3
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.77 E-value=0.029 Score=67.48 Aligned_cols=251 Identities=9% Similarity=-0.040 Sum_probs=147.9
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEE-
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA- 415 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~- 415 (1093)
.-+|.+..+.. +|+.+ ....|+..++....... +......+..++|.+.+..|...
T Consensus 386 ~~~C~~~~~~p-~Ll~a--n~~~Ir~i~l~~~~~~~--------------------l~~~~~~~~gl~~d~~~~~lY~sD 442 (791)
T 3m0c_C 386 TKACKAVGSIA-YLFFT--NRHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSD 442 (791)
T ss_dssp CCCCEETTSCC-EEEEE--CBSSEEEECTTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEE
T ss_pred Cceeeeccccc-ccccc--cccceeEeeccCCccee--------------------eecCCCceEEEeecccCCeeEEee
Confidence 33455544433 33333 33567777776554322 12234567899999866555544
Q ss_pred EcCCEEEEEEccCCCcc-cceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeee
Q 001352 416 YSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 494 (1093)
Q Consensus 416 ~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 494 (1093)
...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++........+...-.....|++
T Consensus 443 ~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaV 521 (791)
T 3m0c_C 443 LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVV 521 (791)
T ss_dssp TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEE
T ss_pred ccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEE
Confidence 45678988988753210 111123334455678999988765 5666677889999997755443333334456788888
Q ss_pred cccCCccEEEEEecC-CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeee
Q 001352 495 HAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 573 (1093)
Q Consensus 495 ~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 573 (1093)
.+.. +.+.++-... +.|.+.+++...........-.....|++++.+..|+.+-. +...|...++........+.
T Consensus 522 Dp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~---~~~~I~~~d~dG~~~~~v~~ 597 (791)
T 3m0c_C 522 DPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILE 597 (791)
T ss_dssp ETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEE
T ss_pred ecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC---CCCcEEEEecCCCceEEEec
Confidence 6543 3344443233 77888888765554455444457889999988888877643 24579999986554443333
Q ss_pred cccccCCCeEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceEEEEe
Q 001352 574 GLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTID 618 (1093)
Q Consensus 574 ~~~~~~~~v~~v~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~ 618 (1093)
... .......+++. +.+|+. -...+.|...|..+|+.+..+.
T Consensus 598 ~~~-~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 598 DEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp CTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCC-ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 211 11234556653 334544 4466778888877777666654
No 299
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.77 E-value=0.05 Score=55.90 Aligned_cols=237 Identities=12% Similarity=0.076 Sum_probs=146.2
Q ss_pred eeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCC
Q 001352 340 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 419 (1093)
Q Consensus 340 ~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~ 419 (1093)
+.-.+|..+ ++|.-. ..++.|+|+++.+.+..+.+ ..+|..=.|-.+. .|+-.+ +.
T Consensus 71 sAIMnP~~~-ViALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT-~t 126 (365)
T 2xzh_A 71 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN 126 (365)
T ss_dssp EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCEEEEEECSSS-EEEEEE-SS
T ss_pred eeeeCCCcc-EEEEec-CCeEEEechHHhhhhcceec--------------------CCccEEEEecCCC-eEEEEc-CC
Confidence 344588887 566644 57899999999988876432 3688888887655 444443 44
Q ss_pred EEEEEEccCCCcccceEEecccc----ccEEEEEeeCCCCcEEEEEEc------CCCcEEEEECCCCceeEEeecCCCCe
Q 001352 420 IVQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPV 489 (1093)
Q Consensus 420 ~i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~h~~~v 489 (1093)
.|+-|+++...... ..+..|. ..|..-..+++.++ ++++|- -.|.+.+|..+.+ .-+.+.||....
T Consensus 127 aVyHWs~~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 202 (365)
T 2xzh_A 127 AVYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 202 (365)
T ss_dssp EEEEEESSTTCCCE--EEEECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEE
T ss_pred cEEEEcccCCCCCc--eeeecchhcccceEEEEEECCCCCE-EEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeee
Confidence 69999998644322 2344443 35777777888886 333332 2467889996554 456678887766
Q ss_pred EEeeecccCCc-cEEEEEec---CCeEEEEEcCCC---Cc-----eEEecC----CCCceEEEEEccCCCEEEEEecCCC
Q 001352 490 YSLCPHAKENI-HFIFSISV---DGKIKAWLYDSL---GA-----RVDYDA----PGLGCTRMAYSANGRRLFSCGTSKE 553 (1093)
Q Consensus 490 ~~~~~~~~~~~-~~l~s~~~---dg~i~vwd~~~~---~~-----~~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~ 553 (1093)
..+.+...+.. .+++.+.. .+.+++-++... .. ...+.. ...-..++..|+.-..++..+.
T Consensus 203 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK--- 279 (365)
T 2xzh_A 203 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK--- 279 (365)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET---
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC---
Confidence 55554322222 23333333 258899888543 11 111111 1223456777777777777665
Q ss_pred CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001352 554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 611 (1093)
Q Consensus 554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~ 611 (1093)
-|.|++||+++|.++..-+-.. ..|...+......-+++....|.|.--.++..
T Consensus 280 -~G~ihlyDleTgt~i~~nrIS~---d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 280 -YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp -TSEEEEEETTTCCEEEEEECCS---SCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred -CcEEEEEEcccCcEEEEeccCC---CceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 7789999999999887665544 55655555555555666666666655555443
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=0.0095 Score=66.66 Aligned_cols=250 Identities=11% Similarity=0.128 Sum_probs=141.7
Q ss_pred CeEEEEECC-CCCEEEEEEc-CCEEEEEEccCCCcccceEEec-cccccEEEEEe-------eCCCCcEEEEEEcCCC--
Q 001352 399 SVNRVVWSP-DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAF-------SAPCKQISVITCGDDK-- 466 (1093)
Q Consensus 399 ~V~~v~~s~-dg~~las~~~-d~~i~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~-------s~d~~~l~l~s~~~d~-- 466 (1093)
....|+|+| ++..|.++.. .+.|++.|.+++.... +.... ........++| +++|+. |+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 467899999 4555555544 4668888888764322 11111 12235889999 999984 44443332
Q ss_pred -----cEEEEECCC-Ccee-----EEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcC-------CCCc------
Q 001352 467 -----TIKVWDAVT-GSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------SLGA------ 522 (1093)
Q Consensus 467 -----~i~vwd~~~-~~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~-------~~~~------ 522 (1093)
.|.+.+... |... ..+.... ....+++++. ++.++++-..++.|..+|+. ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 266666443 2221 2232211 2335566442 45566777788899999987 4432
Q ss_pred -----e-EEec-CCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeC--CCCee--eeeeecc---c---------ccC
Q 001352 523 -----R-VDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE--SEGAI--KRTYQGL---Q---------LQH 579 (1093)
Q Consensus 523 -----~-~~~~-~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~--~~~~~--~~~~~~~---~---------~~~ 579 (1093)
. ..+. ........++|+|+|+.|+.+-. ...+|+.++. .++.. ...+.+. . ..-
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 1122 22345678999999997666542 2566888554 33332 1233222 0 001
Q ss_pred CCeE-EEEEc-------CCCCEEEEEeCCCcEEEEECCCCceEEEEecCC----------------------CCCCCceE
Q 001352 580 NSVS-VVHFD-------TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG----------------------GLPENPRI 629 (1093)
Q Consensus 580 ~~v~-~v~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v 629 (1093)
.... .++.. +++..+++-..++.|+.++ .+|. +.++...+ .......+
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 2234 45554 4566666666788999998 4554 44443221 01123578
Q ss_pred EEecC-CCEEEEEECCCeEEEEEcCCCcee
Q 001352 630 CFNKN-GTLLAVIANENRIKILETPESNSV 658 (1093)
Q Consensus 630 ~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~ 658 (1093)
+++++ |.++++=..++.|+.+++......
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 99986 766666666789999988765443
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.73 E-value=0.01 Score=66.36 Aligned_cols=208 Identities=7% Similarity=0.001 Sum_probs=118.8
Q ss_pred CCeeEEEE-------ccCCCEEEEEeC-C-----e--EEEEEccC-ceeE-----EEECCCCCCeEEEEEcCCCCCEEEE
Q 001352 804 EAVPCFAL-------SKNDAYLFSASG-G-----V--ISLYIVMT-FKTI-----LTIMPPSPTATSLAFNPHDNNVIAI 862 (1093)
Q Consensus 804 ~~v~~l~~-------s~dg~~la~~~d-g-----~--i~iwd~~~-~~~~-----~~~~~~~~~i~~l~~s~~d~~~las 862 (1093)
.....++| +++|..|.++.+ + . |.+++... +... +.+.. ......++++|+++.++++
T Consensus 186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvt 264 (496)
T 3kya_A 186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFN 264 (496)
T ss_dssp SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEE
T ss_pred CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEE
Confidence 45788999 999997777763 2 1 55555333 2221 12211 1234577899956666667
Q ss_pred EeCCCeEEEEEcC-------Ccce-----------eeec-c-cccCCeEEEEEeCCCCE-EEEEeCCCcEEEEeCCC--C
Q 001352 863 GMDDSTILIYNAR-------SSEV-----------ISKL-E-GHSKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDG--W 919 (1093)
Q Consensus 863 g~~dg~i~iwd~~-------~~~~-----------~~~l-~-~h~~~V~~l~~s~dg~~-l~s~s~dg~i~iwd~~~--~ 919 (1093)
-..++.|..+|+. ++.. ...+ . +.......++|+|+|++ .++-+....|+.++.+. +
T Consensus 265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~ 344 (496)
T 3kya_A 265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK 344 (496)
T ss_dssp ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred ECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence 7788899999998 5543 1121 1 12344678999999995 44445667788866543 2
Q ss_pred ceeeeeeeecC---CCccc------CCCCce-EEEEc-------cCCCEEEE-EeCCeEEEEEcCCcceeeeeec-----
Q 001352 920 GIQTCRSLQTP---DGVMT------LAPSET-HIQFH-------KDQTRFLL-VHETHLAIYEAEELTCLKQWFP----- 976 (1093)
Q Consensus 920 ~~~~~~~~~~~---~~~~~------~~~~v~-~~~~s-------~dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~----- 976 (1093)
.......+... .+... .-.... .++.. ++|.+.++ ...++|+.++ .+|. +..+..
T Consensus 345 ~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~ 422 (496)
T 3kya_A 345 EFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGAST 422 (496)
T ss_dssp EECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTH
T ss_pred eecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccc
Confidence 21101111111 11100 001233 44554 45666666 4677899998 4553 333221
Q ss_pred --------CC----------CCCEEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceE
Q 001352 977 --------IS----------SVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQ 1014 (1093)
Q Consensus 977 --------~h----------~~~v~~~~fs~d-g~~l~t~~~dg~v~vwd~~~~~~~ 1014 (1093)
+. -.....|+++++ |.++++=....+|+.++++.....
T Consensus 423 ~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 423 SLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp HHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred cccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 10 124678999987 766666666778888888776554
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.61 E-value=0.019 Score=62.27 Aligned_cols=230 Identities=12% Similarity=0.065 Sum_probs=125.8
Q ss_pred CCeeEEEEccCCCEEEEEeCCeEEEEEccCce-eEEEEC---CCCCCeEEEEEcCC---CCCEEEEEeC---C----CeE
Q 001352 804 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPH---DNNVIAIGMD---D----STI 869 (1093)
Q Consensus 804 ~~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---d~~~lasg~~---d----g~i 869 (1093)
.....++|.|||+++++-.+|.|.+++ .+++ .+..+. ........++++|+ ++.+.++-+. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 346789999999977776679999887 4454 222221 12356889999993 2444444332 3 577
Q ss_pred EEEEcCCc-------cee-eeccc-ccCCeEEEEEeCCCCEEEEEeCC-------------CcEEEEeCCCCcee-----
Q 001352 870 LIYNARSS-------EVI-SKLEG-HSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ----- 922 (1093)
Q Consensus 870 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~dg~~l~s~s~d-------------g~i~iwd~~~~~~~----- 922 (1093)
..|+.... +.+ ..+.. .......++|.|||.+.++.+.. |.|.-.+.+.. ..
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence 77887653 111 11221 11124579999999888875432 34444444321 00
Q ss_pred -eeeeeecCCCcccCCCCceEEEEcc-CCCEEEEE--eCC--eEEEEEcCCcc------------------eeeeeecCC
Q 001352 923 -TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HET--HLAIYEAEELT------------------CLKQWFPIS 978 (1093)
Q Consensus 923 -~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~--~d~--~i~vwd~~~~~------------------~~~~~~~~h 978 (1093)
...... .++. ....++|+| +|++.++- .+. .|.+.. .|. .+..+...
T Consensus 187 ~~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~- 257 (354)
T 3a9g_A 187 PNSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSE- 257 (354)
T ss_dssp TTCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTC-
T ss_pred CCCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCC-
Confidence 000111 1111 356899999 67766662 222 244332 221 11111011
Q ss_pred CCCEEEEEEc-------cCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEe
Q 001352 979 SVPISQATFS-------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1051 (1093)
Q Consensus 979 ~~~v~~~~fs-------~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1051 (1093)
......++|. .+|.++++....+.|...++.......... .++.. ..-.+..+++.| ||.++++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~--~~~~~----~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS--TFFKN----VFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE--EECTT----TSCCEEEEEECT-TSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee--eeccC----CCCCeeEEEECC-CCcEEEEEe
Confidence 3467788883 678777777677788888887542221111 11111 112456788999 577666654
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.59 E-value=0.00037 Score=83.46 Aligned_cols=205 Identities=9% Similarity=0.006 Sum_probs=124.1
Q ss_pred CCeeEEEEccCCCEEEEEe--CCeEEEEEccC----ceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001352 804 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 877 (1093)
Q Consensus 804 ~~v~~l~~s~dg~~la~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~ 877 (1093)
..+..++|++++..|..+. .+.|..+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456789998887777775 47899999875 22222222222345678888635666665566789999998755
Q ss_pred ceeeecccccCCeEEEEEeCCCCEEEEEeC-C-CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE
Q 001352 878 EVISKLEGHSKRVTGLVFSDALNILVSSGG-D-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 955 (1093)
Q Consensus 878 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 955 (1093)
.....+.........+++.|++.+|..+.. . +.|...+++...... ++. ... .....++|+|++..|..+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~---~~l---~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT---ENI---QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESC---SSC---SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEe---CCC---CCccEEEEeccCCEEEEE
Confidence 433333323345678899987655554432 2 678777776532111 111 111 146689999987766664
Q ss_pred --eCCeEEEEEcCCcceeeeeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEec
Q 001352 956 --HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1018 (1093)
Q Consensus 956 --~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~ 1018 (1093)
..+.|.++++.... ...+... .......+++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 45689999986433 3332321 1223345566544 455566667899999998888876664
No 304
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.57 E-value=0.007 Score=63.08 Aligned_cols=202 Identities=12% Similarity=0.102 Sum_probs=124.5
Q ss_pred CeeEEEEccCCCEEEEEe--CCeEEEEEccCceeEEEECCC-----C--CCeEEEEE---cCCCCCEEEEEeC-------
Q 001352 805 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-----S--PTATSLAF---NPHDNNVIAIGMD------- 865 (1093)
Q Consensus 805 ~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~~-----~--~~i~~l~~---s~~d~~~lasg~~------- 865 (1093)
-..+++|.+....+..++ .++|..|+...+......... . ..+..+.+ .| +++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence 345788988666666665 799999999866443332211 1 13578999 68 6888876442
Q ss_pred ------CCeEEEEEcC---Ccceeeecc--ccc-----------CCeEEEEEeCCCCEEEEEeCC-CcEEEEeCCCCcee
Q 001352 866 ------DSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWGIQ 922 (1093)
Q Consensus 866 ------dg~i~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~dg~~l~s~s~d-g~i~iwd~~~~~~~ 922 (1093)
+..|..||+. +++.+.... +.. .....++..++|+..++++.- +.|...+.+.....
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~ 172 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS 172 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence 6789999999 777654332 211 247889999999999998887 77666666543222
Q ss_pred eeeeeecCCCcccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcce--eeeeecCC---CCCEEEE-EEccCCCE-E
Q 001352 923 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPIS---SVPISQA-TFSCDCRM-V 994 (1093)
Q Consensus 923 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~d~~i~vwd~~~~~~--~~~~~~~h---~~~v~~~-~fs~dg~~-l 994 (1093)
. ..+..+.... ....+.+++.|||+.|++. ..+.+..+|+.+... +..-..+. -.....+ .--.+|+. |
T Consensus 173 ~-~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll 249 (334)
T 2p9w_A 173 T-FAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL 249 (334)
T ss_dssp E-EEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred e-eeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence 1 1112211111 1247899999999988883 478899999885333 21110021 1223443 33357877 5
Q ss_pred EEEeCCCcEEEEEcCC
Q 001352 995 FTSFVDGTLSIHEASN 1010 (1093)
Q Consensus 995 ~t~~~dg~v~vwd~~~ 1010 (1093)
++.+..+.+.+.+-+.
T Consensus 250 V~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 250 VGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEETTEEEEEECSST
T ss_pred EEcCCCCEEEEECCCC
Confidence 5555566555555544
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.57 E-value=0.00063 Score=81.48 Aligned_cols=234 Identities=9% Similarity=-0.025 Sum_probs=134.9
Q ss_pred CCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC----CceeEEeecCCCCeEEee
Q 001352 418 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSLC 493 (1093)
Q Consensus 418 d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~----~~~~~~~~~h~~~v~~~~ 493 (1093)
.+.|+..++.+.+... +......+..++|.+.+.. ++++-...+.|+.+++.+ ......+.........++
T Consensus 385 ~~~I~~id~~~~~~~~----~~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEEC----CSCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCccee----eeccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 3467888877654322 1122335678999987764 444545567899999875 222222211112344566
Q ss_pred ecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeee
Q 001352 494 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 573 (1093)
Q Consensus 494 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 573 (1093)
+.+. ++.++++-...+.|.++++........+.........++++|.+.+|+.+... ..+.|..+++.... ...+.
T Consensus 460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~-~~~l~ 535 (699)
T 1n7d_A 460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVD-IYSLV 535 (699)
T ss_dssp CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCC-CCEES
T ss_pred EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCC-eeEEE
Confidence 6433 33455555667889999887654444433333456788999977766654321 12568777765332 22221
Q ss_pred cccccCCCeEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001352 574 GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 652 (1093)
Q Consensus 574 ~~~~~~~~v~~v~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 652 (1093)
... ......++|+|++..|+.+ +..+.|.++++........+...........+++..+ .++++....+.|..++.
T Consensus 536 ~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 536 TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred eCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 111 2456789999986666554 4667899999875444333332222223456677654 45555566788999998
Q ss_pred CCCceeeeccc
Q 001352 653 PESNSVDAAGV 663 (1093)
Q Consensus 653 ~~~~~~~~~~~ 663 (1093)
.+++.+..+..
T Consensus 613 ~~G~~~~~i~~ 623 (699)
T 1n7d_A 613 LTGSDVNLLAE 623 (699)
T ss_dssp TTEEEEECCCT
T ss_pred cCCCceEEeec
Confidence 77766665543
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.53 E-value=0.018 Score=62.51 Aligned_cols=228 Identities=11% Similarity=0.066 Sum_probs=121.2
Q ss_pred CeeEEEEccCCCEEEEEeCCeEEEEEccCcee--EEEEC---CCCCCeEEEEEcCCC----CCEEEEEeCC-----CeEE
Q 001352 805 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIM---PPSPTATSLAFNPHD----NNVIAIGMDD-----STIL 870 (1093)
Q Consensus 805 ~v~~l~~s~dg~~la~~~dg~i~iwd~~~~~~--~~~~~---~~~~~i~~l~~s~~d----~~~lasg~~d-----g~i~ 870 (1093)
....++|.|||+++++-..|.|.+++ +++. +..+. ........++|+| + +.+.++-... +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 45689999999977766679999998 4432 22222 1235688999999 6 4444433332 6788
Q ss_pred EEEcCCcc-----e-eeecc---cccCCeEEEEEeCCCCEEEEEeCC-------------CcEEEEeCCCCcee------
Q 001352 871 IYNARSSE-----V-ISKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------ 922 (1093)
Q Consensus 871 iwd~~~~~-----~-~~~l~---~h~~~V~~l~~s~dg~~l~s~s~d-------------g~i~iwd~~~~~~~------ 922 (1093)
.|+...++ . +..+. +.......++|.|||.+.++.+.. |.|.-++.+. ...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 88877431 1 12233 111123579999999877775432 3454455443 100
Q ss_pred -----eeeeeecCCCcccCCCCceEEEEcc-CCCEEEEE-eCCeE------EEEEcCCcc------------------ee
Q 001352 923 -----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV-HETHL------AIYEAEELT------------------CL 971 (1093)
Q Consensus 923 -----~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~-~d~~i------~vwd~~~~~------------------~~ 971 (1093)
...... .++. ....++|+| +|++.++- ..+.+ .|.-+..|. .+
T Consensus 188 ~~~~~~~~i~a--~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVYS--LGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEEE--ECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEEE--EcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 000000 0111 256789999 67766662 22221 233333222 11
Q ss_pred eeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEe-ccccccCCCCCCCccceeEEEeCCCCCCEEEEE
Q 001352 972 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1050 (1093)
Q Consensus 972 ~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~ 1050 (1093)
.. . .+......++| .+|.++++....+.|...++......... ....++.. .-.+..+++.| ||.++++.
T Consensus 262 ~~-~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 262 YF-W-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp EE-C-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEE
T ss_pred Ee-c-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEE
Confidence 11 1 22335677888 57777776666677777777654321000 00111111 12456788888 46666655
Q ss_pred e
Q 001352 1051 L 1051 (1093)
Q Consensus 1051 ~ 1051 (1093)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.53 E-value=0.11 Score=55.81 Aligned_cols=238 Identities=12% Similarity=0.077 Sum_probs=147.1
Q ss_pred eeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCC
Q 001352 340 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 419 (1093)
Q Consensus 340 ~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~ 419 (1093)
+.-.+|..+ ++|.-. ..++.|+|+++...+..+.+ ..+|..=.|-.+. .|+-.+ +.
T Consensus 70 sAIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~t 125 (494)
T 1bpo_A 70 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN 125 (494)
T ss_dssp EEEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SS
T ss_pred eeeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CC
Confidence 455678777 466543 57899999999888775432 3467777776544 455443 45
Q ss_pred EEEEEEccCCCcccceEEecccc----ccEEEEEeeCCCCcEEEEEEc------CCCcEEEEECCCCceeEEeecCCCCe
Q 001352 420 IVQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPV 489 (1093)
Q Consensus 420 ~i~iwd~~~~~~~~~~~~~~~h~----~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~h~~~v 489 (1093)
.|+-|+++...... ..+..|. ..|..-..+++.++ ++++|= -.|.+.+|..+.+ .-+.+.||....
T Consensus 126 aVyHWsi~~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F 201 (494)
T 1bpo_A 126 AVYHWSMEGESQPV--KMFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF 201 (494)
T ss_dssp EEEEEESSSSCCCE--EEEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE
T ss_pred eeEEecccCCCCch--hheecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeecccc-ccchheeeeeee
Confidence 69999998644322 2344443 35777778899886 333332 2467889996554 456678887766
Q ss_pred EEeeecccCCc-cEEEEEecC---CeEEEEEcCCC---Cc-----eEEecC----CCCceEEEEEccCCCEEEEEecCCC
Q 001352 490 YSLCPHAKENI-HFIFSISVD---GKIKAWLYDSL---GA-----RVDYDA----PGLGCTRMAYSANGRRLFSCGTSKE 553 (1093)
Q Consensus 490 ~~~~~~~~~~~-~~l~s~~~d---g~i~vwd~~~~---~~-----~~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~ 553 (1093)
..+.+...... .+++.+... +.+++-++... .. ...+.. ...-..++..|+.-..++..+.
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK--- 278 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK--- 278 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET---
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec---
Confidence 66655332222 233333332 78999988653 11 111111 1223457778887777777765
Q ss_pred CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001352 554 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 612 (1093)
Q Consensus 554 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~ 612 (1093)
-|.|.+||+.++.++..-+-.. ..|...+......-+++....|.|.--.++...
T Consensus 279 -~G~i~lyDleTgt~i~~nrIs~---~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 279 -YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp -TSEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred -CceEEEEecccceeeeeecccC---CceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 7789999999999887665444 556555555555566666666666555554433
No 308
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.35 E-value=0.053 Score=56.54 Aligned_cols=166 Identities=8% Similarity=0.049 Sum_probs=106.7
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEE---CCCCCEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW---SPDGSLLG 413 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~---s~dg~~la 413 (1093)
-..+++|.+.+..++++.-..++|..||...+..... .+. ++.. -......+..+.| .|++++++
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~--~~s~---------~g~~~~~~sGl~~~~~D~~grL~v 81 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID--GASS---------NGDGEQQMSGLSLLTHDNSKRLFA 81 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT--TTCC---------SSCCSEEEEEEEESSSSSCCEEEE
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC--Cccc---------cCCCcceeeEEEEeccCCCCcEEE
Confidence 4458899886665677766899999999986654432 110 0000 0001124678999 68888877
Q ss_pred EEE-------------cCCEEEEEEcc---CCCcccceEEecccc-----------ccEEEEEeeCCCCcEEEEEEcCC-
Q 001352 414 VAY-------------SKHIVQLYAYH---GGSDARQQLEIDAHV-----------GNVNDLAFSAPCKQISVITCGDD- 465 (1093)
Q Consensus 414 s~~-------------~d~~i~iwd~~---~~~~~~~~~~~~~h~-----------~~v~~~~~s~d~~~l~l~s~~~d- 465 (1093)
+.. .+..|..||+. +++.+... .+.... .....++..++|+ ..++++.-
T Consensus 82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~~ 158 (334)
T 2p9w_A 82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALGM 158 (334)
T ss_dssp EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEESS
T ss_pred EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCCCC
Confidence 643 26789999999 77654422 232221 2488999999999 78888877
Q ss_pred CcEEEEECCCCceeEEeec------CCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCC
Q 001352 466 KTIKVWDAVTGSRTYSFEG------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 520 (1093)
Q Consensus 466 ~~i~vwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 520 (1093)
+.|...+.. |+.+..+.. .....+.|+++| ++..|++....|.+..+|+...
T Consensus 159 ~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 159 PAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp CEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred CeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 887777744 333333211 112255777754 6667777766999999998853
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.30 E-value=0.037 Score=60.03 Aligned_cols=238 Identities=9% Similarity=0.069 Sum_probs=125.9
Q ss_pred CeeEEEEccCCC-EEEEEeCCeEEEEEccCceeEEEE-------CCCCCCeEEEEEcCC---CCCEEEEEeC-------C
Q 001352 805 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTI-------MPPSPTATSLAFNPH---DNNVIAIGMD-------D 866 (1093)
Q Consensus 805 ~v~~l~~s~dg~-~la~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~l~~s~~---d~~~lasg~~-------d 866 (1093)
....|+|.|||+ ++++-..|.|++++.. ++....+ .........++++|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 457899999999 7766567999999853 3322111 112345689999993 3444443222 2
Q ss_pred CeEEEEEcCCc-------ce-eeecc-----cccCCeEEEEEeCCCCEEEEEeCC-------------CcEEEEeCCCCc
Q 001352 867 STILIYNARSS-------EV-ISKLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWG 920 (1093)
Q Consensus 867 g~i~iwd~~~~-------~~-~~~l~-----~h~~~V~~l~~s~dg~~l~s~s~d-------------g~i~iwd~~~~~ 920 (1093)
..|..|++..+ +. +..+. .|. ...++|.|||.+.++.+.. |.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666766532 11 11222 132 3569999999777765442 345555554310
Q ss_pred ee----------eeeeeecCCCcccCCCCceEEEEcc-CCCEEEEE--eCCeEEEEEcCCcce-----------------
Q 001352 921 IQ----------TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEELTC----------------- 970 (1093)
Q Consensus 921 ~~----------~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~--~d~~i~vwd~~~~~~----------------- 970 (1093)
.. ...... .++. ....++|.| +|++.++- .++.=.|.-+..+..
T Consensus 176 p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 000111 1111 267899999 66666652 222122222211110
Q ss_pred -----------e-eeeecCCCCCEEEEEEcc-------CCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCc
Q 001352 971 -----------L-KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1031 (1093)
Q Consensus 971 -----------~-~~~~~~h~~~v~~~~fs~-------dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1093)
. ..+.-.+...+..++|.. +|.++++.-..+.|...++..+....... .+.. ..
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~----~~ 322 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILTD----RG 322 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESGG----GC
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cccC----CC
Confidence 0 000001234677788863 57788777777888888888665443322 1111 11
Q ss_pred cceeEEEeCCCCCCEEEEEe-CCCcEEEEec
Q 001352 1032 VYPHAIAAHPLKPTQFAVGL-TNGEVYVIEP 1061 (1093)
Q Consensus 1032 v~~~~~~~~p~d~~~l~~~~-~dg~v~~w~~ 1061 (1093)
-.+..+++.| ||.++++.. .+| +||.+
T Consensus 323 ~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 2466788999 577665443 334 45555
No 310
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.28 E-value=0.22 Score=51.30 Aligned_cols=231 Identities=13% Similarity=0.123 Sum_probs=149.7
Q ss_pred EEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-cceeeecccc
Q 001352 808 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 886 (1093)
Q Consensus 808 ~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~-~~~~~~l~~h 886 (1093)
+.-.+|..+.+|.-...+++|+|+++...++.+.-. ..|.-=.|-. .+.|+..+ +..|+-|++.. ..+++.+..|
T Consensus 71 sAIMnP~~~ViALrag~~LQiFnletK~klks~~~~-e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECS-SCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEecCCeEEEechHHhhhhcceecC-CccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 556789999999888889999999999988887743 4666666764 45666665 45799999975 3455555544
Q ss_pred ----cCCeEEEEEeCCCCEEEEEeC-------CCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCC----E
Q 001352 887 ----SKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT----R 951 (1093)
Q Consensus 887 ----~~~V~~l~~s~dg~~l~s~s~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~----~ 951 (1093)
...|..-..+++.++++..|- .|.+.+|..+.+ .-+..+||.. .-..+-.+|. .
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~------~sQ~ieGhaa-----~F~~~~~~g~~~~~~ 215 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA-----SFAQFKMEGNAEEST 215 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT------EEEEECCSEE-----EEEEECCTTCSSCEE
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc------ccceeeeeee-----eeEEEecCCCCCCce
Confidence 346777888999999876543 367889999874 3455566643 1123333332 2
Q ss_pred EEE-Ee----CCeEEEEEcCCc---c------eeeeeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEE
Q 001352 952 FLL-VH----ETHLAIYEAEEL---T------CLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1015 (1093)
Q Consensus 952 l~~-~~----d~~i~vwd~~~~---~------~~~~~~~~--h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~ 1015 (1093)
|++ +. .++++|.++... . .+...++. -..-..++..|+.-..+..-+.-|.|.+||+.+|.++.
T Consensus 216 lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 216 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 322 32 258999998432 1 11111221 14455578888877788888899999999999999987
Q ss_pred EeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCC
Q 001352 1016 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1064 (1093)
Q Consensus 1016 ~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1064 (1093)
+-+. +.+.|... +.+.. ..-++.....|.|.--.+.+.
T Consensus 296 ~nrI--------S~d~iF~t--a~~~~-~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 296 MNRI--------SGETIFVT--APHEA-TAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEC--------CSSCEEEE--EEEGG-GTEEEEEETTCEEEEEEECTT
T ss_pred Eecc--------CCCceEEe--cccCC-CCcEEEEcCCCEEEEEEECcc
Confidence 6651 12334322 23221 234555568888777666543
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.27 E-value=0.12 Score=55.87 Aligned_cols=231 Identities=17% Similarity=0.141 Sum_probs=117.7
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCC---CCEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLLG 413 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~d---g~~la 413 (1093)
..+.++|.|||+ |+++ ..+|.|.++| .+|+ .....+. +..........|+|+|+ +.+|.
T Consensus 30 ~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g~ly 91 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKSWVY 91 (354)
T ss_dssp CEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred CCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCCEEE
Confidence 678999999997 4554 4569999997 4454 1110100 01223456889999998 55555
Q ss_pred EEEc----C----CEEEEEEccCCC-cc---cce-EEec-cccccEEEEEeeCCCCcEEEEEEcC-------------CC
Q 001352 414 VAYS----K----HIVQLYAYHGGS-DA---RQQ-LEID-AHVGNVNDLAFSAPCKQISVITCGD-------------DK 466 (1093)
Q Consensus 414 s~~~----d----~~i~iwd~~~~~-~~---~~~-~~~~-~h~~~v~~~~~s~d~~~l~l~s~~~-------------d~ 466 (1093)
++.. + ..|..|+...+. .+ +.+ ..+. +.......++|.|||. ++++.+. .|
T Consensus 92 v~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~~G 169 (354)
T 3a9g_A 92 LYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSLAG 169 (354)
T ss_dssp EEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCCSS
T ss_pred EEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCCCe
Confidence 5433 2 568888876541 11 111 1122 1112346799999997 5555432 24
Q ss_pred cEEEEECCCC---------ceeEEeecCCCCeEEeeecccCCccEEEEEecCC---eEEEEEcCCCC-------------
Q 001352 467 TIKVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLG------------- 521 (1093)
Q Consensus 467 ~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~------------- 521 (1093)
.|.-.+.... ..+.. .++.. ...++|++. ++.+.++-...+ .|.+. ..+.
T Consensus 170 ~I~ri~~dG~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~ 244 (354)
T 3a9g_A 170 KILRVDEEGRPPADNPFPNSPIWS-YGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGR 244 (354)
T ss_dssp EEEEECTTSCCCTTSSSTTCCEEE-ECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCC
T ss_pred EEEEEcCCCCCCCCCCCCCCcEEE-EccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCC
Confidence 5555554321 01111 23333 345677542 334444332221 13222 1111
Q ss_pred -----ceEEecCCCCceEEEEEc-------cCCCEEEEEecCCCCceeEEEEeCCCC-eee--eeeecccccCCCeEEEE
Q 001352 522 -----ARVDYDAPGLGCTRMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEG-AIK--RTYQGLQLQHNSVSVVH 586 (1093)
Q Consensus 522 -----~~~~~~~~~~~v~~~~~s-------~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~~~v~~v~ 586 (1093)
....+.........++|. .+|.++++... .+.|...++... ... ..+... ....+..++
T Consensus 245 ~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~--~~~rp~~v~ 318 (354)
T 3a9g_A 245 GEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKN--VFGRLRDVV 318 (354)
T ss_dssp TTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTT--TSCCEEEEE
T ss_pred CCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccC--CCCCeeEEE
Confidence 112221223356778883 56766555432 445777777643 222 122111 125688899
Q ss_pred EcCCCCEEEEEe
Q 001352 587 FDTAKDQILAAG 598 (1093)
Q Consensus 587 ~~~~~~~l~~~~ 598 (1093)
+.|||..+++..
T Consensus 319 ~~pDG~lyv~~~ 330 (354)
T 3a9g_A 319 IDDDGGILISTS 330 (354)
T ss_dssp ECTTSCEEEEEC
T ss_pred ECCCCcEEEEEe
Confidence 999986555543
No 312
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.15 E-value=0.031 Score=60.59 Aligned_cols=230 Identities=11% Similarity=0.015 Sum_probs=115.8
Q ss_pred CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEec---cccccEEEEEeeCC---CCcEEEEEEcCC-----C
Q 001352 398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID---AHVGNVNDLAFSAP---CKQISVITCGDD-----K 466 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~---~h~~~v~~~~~s~d---~~~l~l~s~~~d-----~ 466 (1093)
.....++|.|||+++++ ..++.|.+++ .++ ......+. ........++|+|+ +.. ++++-... +
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCcc
Confidence 45678999999985554 5679999998 333 12111111 12346789999998 554 33333322 5
Q ss_pred cEEEEECCCCc-----ee-EEee---cCCCCeEEeeecccCCccEEEEEec-------------CCeEEEEEcCCC----
Q 001352 467 TIKVWDAVTGS-----RT-YSFE---GHGAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL---- 520 (1093)
Q Consensus 467 ~i~vwd~~~~~-----~~-~~~~---~h~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~vwd~~~~---- 520 (1093)
.|..++...+. .+ ..+. +.......++|. +||.+.++.+. .|.|..++.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG--PDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC--TTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC--CCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 78888876542 11 1233 111123567774 46655555432 145555554420
Q ss_pred --------CceEEecCCCCceEEEEEcc-CCCEEEEEecCCCC-----ceeEEEEeCCC--------C--------eeee
Q 001352 521 --------GARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEG-----ESFLVEWNESE--------G--------AIKR 570 (1093)
Q Consensus 521 --------~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~-----~~~i~iwd~~~--------~--------~~~~ 570 (1093)
.....+...-.....++|+| +|++.++-. ..+. ...|.+..... + ..+.
T Consensus 184 npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~-g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH-GPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE-CC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc-CCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 00011111122356789999 565544432 2211 01233332111 0 0111
Q ss_pred eeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------EEEEecCCCCCCCceEEEecCCCEEEEEE
Q 001352 571 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL------LTTIDAGGGLPENPRICFNKNGTLLAVIA 642 (1093)
Q Consensus 571 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 642 (1093)
.+.. ......++| .++..+++....+.|...++..... ...+- .....+..+++.|||.++++..
T Consensus 263 ~~~~----~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWPQ----GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECTT----CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEEC
T ss_pred ecCC----CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCcEEEEEe
Confidence 1111 124566777 4565555555667777777664331 11221 1123578899999997666654
No 313
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.12 E-value=0.027 Score=60.42 Aligned_cols=110 Identities=13% Similarity=0.111 Sum_probs=82.1
Q ss_pred EEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCC----CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce----
Q 001352 808 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---- 879 (1093)
Q Consensus 808 ~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~---- 879 (1093)
-.....+|.-++++.++.||.-++......+.+... ...|..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 345567888899999999999998855555555543 23788999999 999999876 55799988874321
Q ss_pred --------eeeccc------ccCCeEEEEEeCC---CCEEEEEeCCCcEEEEeCCCC
Q 001352 880 --------ISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGW 919 (1093)
Q Consensus 880 --------~~~l~~------h~~~V~~l~~s~d---g~~l~s~s~dg~i~iwd~~~~ 919 (1093)
...+.- ...+|..+.|+|- +..|++-..|++|++||+...
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS 159 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence 111111 2567999999995 468999999999999999873
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.09 E-value=0.44 Score=51.17 Aligned_cols=266 Identities=9% Similarity=0.121 Sum_probs=160.1
Q ss_pred CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEE
Q 001352 358 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 437 (1093)
Q Consensus 358 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~ 437 (1093)
.+|.|-|+.++..+..+++. -.+.-.+|..+.||.-. ..++.|+|+++...++ .
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~----------------------AdsAIMnP~~~iiALra-g~~lQiFnle~K~klk---s 101 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPIS----------------------ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMK---A 101 (494)
T ss_dssp CEEEEEETTSTTSCEEEECC----------------------CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEE---E
T ss_pred CeEEEEECCCCCcceecccc----------------------cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhc---c
Confidence 47889999887766543321 22344677777777664 6789999999976444 2
Q ss_pred eccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCC-CceeEEeecCCC--CeEEeeecccCCccEEEEEe-------
Q 001352 438 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTYSFEGHGA--PVYSLCPHAKENIHFIFSIS------- 507 (1093)
Q Consensus 438 ~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~-~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~------- 507 (1093)
.. ....|..=.|-.+.. +-||| +..|+-|++.. ..+.+.|..|.. ...-+.+..+++.++++..+
T Consensus 102 ~~-~~e~VvfWkWis~~~-l~lVT---~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~ 176 (494)
T 1bpo_A 102 HT-MTDDVTFWKWISLNT-VALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR 176 (494)
T ss_dssp EE-CSSCCCEEEEEETTE-EEEEC---SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE
T ss_pred ee-cCCCceEEEecCCCe-EEEEc---CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCc
Confidence 22 234566667766543 23333 55799999874 356666665542 22223333455666665443
Q ss_pred cCCeEEEEEcCCCCceEEecCCCCceEEEEEccCC---CEEEEEecCCCCceeEEEEeCCCC---e------eeeeeecc
Q 001352 508 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---RRLFSCGTSKEGESFLVEWNESEG---A------IKRTYQGL 575 (1093)
Q Consensus 508 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~---~~l~~~~~~~~~~~~i~iwd~~~~---~------~~~~~~~~ 575 (1093)
..|.+.+|..+.. ....+++|......+.+..+. ..+..+..... .+.+.+.++... . .+..+-..
T Consensus 177 v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~-g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp 254 (494)
T 1bpo_A 177 VVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA-GGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 254 (494)
T ss_dssp EEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT-CCEEEEEECSCCCTTCCCCCCEEEECCCCT
T ss_pred ccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCC-CcEEEEEEcCCCccCCCCccceeeeeeCCc
Confidence 2467888887653 334455555444333332211 23333332222 367888887542 1 11111122
Q ss_pred cccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001352 576 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 655 (1093)
Q Consensus 576 ~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 655 (1093)
....+-..++..++.-..++.-+.-|.+.+||++++.++..-..... .|...+.+....-++.....|.|.-..+...
T Consensus 255 e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 22235567788888888899999999999999999999987765433 3444455555555666678888887777766
Q ss_pred cee
Q 001352 656 NSV 658 (1093)
Q Consensus 656 ~~~ 658 (1093)
..+
T Consensus 333 ~iv 335 (494)
T 1bpo_A 333 NII 335 (494)
T ss_dssp THH
T ss_pred cch
Confidence 443
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.00 E-value=0.13 Score=54.40 Aligned_cols=237 Identities=10% Similarity=-0.056 Sum_probs=118.7
Q ss_pred eEEEEEccC--CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC----CEEE
Q 001352 349 TLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK----HIVQ 422 (1093)
Q Consensus 349 ~llasg~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d----~~i~ 422 (1093)
+|++.|+.+ ..+.+||..+++-..... +......-.++.+ +++.++.|+.+ ..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~-----------------~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~ 73 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRC-----------------PFEKRRDAACVFW--DNVVYILGGSQLFPIKRMD 73 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCC-----------------CSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCC-----------------CCcccceeEEEEE--CCEEEEEeCCCCCCcceEE
Confidence 577777753 568888888765432111 1111112222222 67777777754 5788
Q ss_pred EEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC------CcEEEEECCCCceeEEee--cCCCCeEEeee
Q 001352 423 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSRTYSFE--GHGAPVYSLCP 494 (1093)
Q Consensus 423 iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d------~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~ 494 (1093)
+||..+++-.. ...+.........+. -+++ +++.|+.+ ..+.+||..+.+-...-. .....-..+.+
T Consensus 74 ~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 148 (306)
T 3ii7_A 74 CYNVVKDSWYS-KLGPPTPRDSLAACA--AEGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA 148 (306)
T ss_dssp EEETTTTEEEE-EECCSSCCBSCEEEE--ETTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred EEeCCCCeEEE-CCCCCccccceeEEE--ECCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE
Confidence 99988764211 111111111111222 2555 56666654 458899988876433211 11111111111
Q ss_pred cccCCccEEEEEec---------CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC-CceeEEEEeCC
Q 001352 495 HAKENIHFIFSISV---------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-GESFLVEWNES 564 (1093)
Q Consensus 495 ~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~-~~~~i~iwd~~ 564 (1093)
++.+++.|+. -..+.+||+.+..-...-..+.......+..-+++.++.++.+.. ....+.+||+.
T Consensus 149 ----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~ 224 (306)
T 3ii7_A 149 ----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIK 224 (306)
T ss_dssp ----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETT
T ss_pred ----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCC
Confidence 4456666654 344788888765432222222221111222236667777654321 12458899998
Q ss_pred CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEE
Q 001352 565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTT 616 (1093)
Q Consensus 565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~ 616 (1093)
+.+-...-.... ......++.+ ++..++.|+.+ ..+.+||..+.+....
T Consensus 225 ~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 278 (306)
T 3ii7_A 225 LNEWKMVSPMPW-KGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVAN 278 (306)
T ss_dssp TTEEEECCCCSC-CBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEEE
T ss_pred CCcEEECCCCCC-CccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeC
Confidence 875443321111 1122233333 55666667743 5688999988765443
No 316
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.99 E-value=0.036 Score=58.66 Aligned_cols=196 Identities=9% Similarity=-0.034 Sum_probs=98.9
Q ss_pred CCCEEEEEEcC-----CEEEEEEccCCCc--ccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-----CcEEEEECCC
Q 001352 408 DGSLLGVAYSK-----HIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVT 475 (1093)
Q Consensus 408 dg~~las~~~d-----~~i~iwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~ 475 (1093)
+++.++.|+.+ ..+.+||..+++. ......+......-..+.+ +++ +++.|+.+ ..+.+||+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCE--EEEEcccCCCcccceEEEEcCCC
Confidence 57777777654 3589999988651 1111111111111112222 455 56666643 3588999888
Q ss_pred CceeEE--eecCCCCeEEeeecccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEE
Q 001352 476 GSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 548 (1093)
Q Consensus 476 ~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 548 (1093)
.+-... +......-..+.+ ++.+++.|+.+ ..+.+||+.+..-...-..+.......+..-+++.++.+
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 213 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVG 213 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred CeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEe
Confidence 764432 2111111111111 44667777654 457888887654332222222221112222366777777
Q ss_pred ecCCCC-ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceE
Q 001352 549 GTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLL 614 (1093)
Q Consensus 549 ~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 614 (1093)
+.+... ...+.+||+.+.+....-.... .......+.+ ++..++.|+.+ ..+.+||..+.+..
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 282 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTT-PRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWE 282 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCCCC-cccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence 654322 3468999998876543322111 1112222332 55666667654 45788888876554
No 317
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.97 E-value=0.047 Score=57.78 Aligned_cols=235 Identities=11% Similarity=-0.005 Sum_probs=118.5
Q ss_pred CCCEEEEEE-cC-----CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-----CcEEEEECCCC
Q 001352 408 DGSLLGVAY-SK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG 476 (1093)
Q Consensus 408 dg~~las~~-~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~ 476 (1093)
++..++.|+ .+ ..+.+||..+++-.. ...+....... ++ ...+++ +++.|+.+ ..+.+||..++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~-~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYV-AS-VSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSC-EE-EEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccc-cE-EEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 455666666 33 358889988754211 11111111111 12 223454 56667654 46899998887
Q ss_pred c---eeEE--eecCCCCeEEeeecccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEE
Q 001352 477 S---RTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 546 (1093)
Q Consensus 477 ~---~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 546 (1093)
+ -... +......-..+.+ ++.+++.|+.+ ..+.+||..+.+-...-..+.......+..-+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 3322 1111111111111 44566776654 3578888776543322222222111122223677777
Q ss_pred EEecCCC-CceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEecC
Q 001352 547 SCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAG 620 (1093)
Q Consensus 547 ~~~~~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~ 620 (1093)
.++.++. ....+..||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-...
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 7665332 13458899998876543321111 1112222222 45566666653 56899999988765543322
Q ss_pred CCCCCCceEEEecCCCEEEEEECC-----CeEEEEEcCCCc
Q 001352 621 GGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESN 656 (1093)
Q Consensus 621 ~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~ 656 (1093)
.. .....+..-++++++.|+.+ ..+.+||..+.+
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 21 12222333367777777654 457788887664
No 318
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.95 E-value=0.55 Score=49.93 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=58.9
Q ss_pred CeeEEEEccCCCEEEEEe--CCeEEEEEccCcee------------------EEEECCCCCCeEEEEEcCCCCCEEEEEe
Q 001352 805 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGM 864 (1093)
Q Consensus 805 ~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~~~------------------~~~~~~~~~~i~~l~~s~~d~~~lasg~ 864 (1093)
....++|.|+|.+.++-. ++.-.|--+..|.. +..+..+......++|.. +.++....
T Consensus 203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l 280 (347)
T 3das_A 203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGL 280 (347)
T ss_dssp BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEES
T ss_pred CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeeccc
Confidence 345789999887766543 23233333332221 122222223556777864 55666666
Q ss_pred CCCeEEEEEcCCcce----eeecccccCCeEEEEEeCCCCEEEEEe
Q 001352 865 DDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG 906 (1093)
Q Consensus 865 ~dg~i~iwd~~~~~~----~~~l~~h~~~V~~l~~s~dg~~l~s~s 906 (1093)
..+.|....+..+.. ...+.+..+++..|+..|||.++++.+
T Consensus 281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 666777777765432 233445557899999999998777654
No 319
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.87 E-value=0.61 Score=51.69 Aligned_cols=113 Identities=17% Similarity=0.112 Sum_probs=76.8
Q ss_pred CeeEEEEccCCCEEEEEe--CCeEEEEEccCc------ee-------EEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeE
Q 001352 805 AVPCFALSKNDAYLFSAS--GGVISLYIVMTF------KT-------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 869 (1093)
Q Consensus 805 ~v~~l~~s~dg~~la~~~--dg~i~iwd~~~~------~~-------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i 869 (1093)
..-.+.++|||+++++++ +.++.++|++.. +. ..... ..-.....+|.+ +|....+-.-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence 344688999999999998 688999998742 11 11222 334667899999 78666667789999
Q ss_pred EEEEcCCc----------ceeeecccccCCeEEEEE------eCCCCEEEEEe---CCCc----------EEEEeCCCCc
Q 001352 870 LIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG---GDAQ----------IFVWDVDGWG 920 (1093)
Q Consensus 870 ~iwd~~~~----------~~~~~l~~h~~~V~~l~~------s~dg~~l~s~s---~dg~----------i~iwd~~~~~ 920 (1093)
.-|++... ..+.++.-|-.+ -.+.- .|||++|++.. .|+. -.+.|++..+
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 99999753 344555545432 22322 47999999874 4554 3677777654
No 320
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.83 E-value=0.069 Score=56.62 Aligned_cols=233 Identities=10% Similarity=0.003 Sum_probs=123.6
Q ss_pred CEEEEEe---CCeEEEEEccCceeEE--EECCCCCCeEEEEEcCCCCCEEEEEeCC----CeEEEEEcCCcce--eeecc
Q 001352 816 AYLFSAS---GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEV--ISKLE 884 (1093)
Q Consensus 816 ~~la~~~---dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~i~iwd~~~~~~--~~~l~ 884 (1093)
.+++.|+ ...+.+||..+.+-.. .+.........+.+ ++++++.|+.+ ..+.+||+.+.+- +..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3445554 2568999988764322 22222222223332 56788888765 5789999987642 22332
Q ss_pred cccCCeEEEEEeCCCCEEEEEeCC------CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-e-
Q 001352 885 GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H- 956 (1093)
Q Consensus 885 ~h~~~V~~l~~s~dg~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~- 956 (1093)
.....-..+.+ ++++++.|+.+ ..+.+||..+.+-..... .+.. .....+..-++++.+.| .
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~------r~~~~~~~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS--MLTQ------RCSHGMVEANGLIYVCGGSL 159 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC--CSSC------CBSCEEEEETTEEEEECCEE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC--CcCC------cceeEEEEECCEEEEECCCC
Confidence 21222222222 67788888765 458899998865333211 1111 11122233466666663 2
Q ss_pred --------CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceEEEecccccc
Q 001352 957 --------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYL 1023 (1093)
Q Consensus 957 --------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~d-----g~v~vwd~~~~~~~~~~~~~~~~ 1023 (1093)
-..+.+||..+.+-...-.... .+....+..-++++++.|+.+ ..+.+||+.+.+.... ..+
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~ 234 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV----SPM 234 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC----CCC
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC----CCC
Confidence 3458899998875433211111 111111222377777777654 3588999988754421 122
Q ss_pred CCCCCCCccceeEEEeCCCCCCEEEEEeCC-----CcEEEEecCCCCCCcccCCCcc
Q 001352 1024 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPPDE 1075 (1093)
Q Consensus 1024 ~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-----g~v~~w~~~~~~~~~~~~~~~~ 1075 (1093)
+.. .....++.. ++.+++.|+.+ ..+.+||+ ...+|...++.+
T Consensus 235 p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~ 282 (306)
T 3ii7_A 235 PWK-----GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT--ETDKWVANSKVR 282 (306)
T ss_dssp SCC-----BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET--TTTEEEEEEEEE
T ss_pred CCC-----ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC--CCCeEEeCCCcc
Confidence 222 111122222 36788888865 45677776 445688765443
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.79 E-value=0.076 Score=56.16 Aligned_cols=235 Identities=12% Similarity=0.046 Sum_probs=115.9
Q ss_pred CCEEEEEEcC----CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCC-----CcEEEEECCCCcee
Q 001352 409 GSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGSRT 479 (1093)
Q Consensus 409 g~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d-----~~i~vwd~~~~~~~ 479 (1093)
+..++.|+.+ ..+.+||..+++- .....+......- +++. -++. +++.|+.+ ..+.+||..+.+-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~ 90 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCRA-GMVY-MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT 90 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBSC-EEEE-ETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCcccccc-eEEE-ECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence 4455555532 3588888887542 1111111111111 1222 2454 56666654 35889998877643
Q ss_pred EEe--ecCCCCeEEeeecccCCccEEEEEecCC-----eEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC
Q 001352 480 YSF--EGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 552 (1093)
Q Consensus 480 ~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 552 (1093)
..- ......-..+.+ ++.+++.|+.++ .+.+||+.+..-...-..+.......+..-+++.++.++.+.
T Consensus 91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 166 (302)
T 2xn4_A 91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV 166 (302)
T ss_dssp EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCC
Confidence 321 111111111222 446777777654 467777766543222111211111112223667777766533
Q ss_pred CC---ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEecCCCCC
Q 001352 553 EG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLP 624 (1093)
Q Consensus 553 ~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 624 (1093)
.. ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||..+.+....-.....
T Consensus 167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-- 241 (302)
T 2xn4_A 167 ASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-- 241 (302)
T ss_dssp TTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred CCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence 22 3458899998876543321111 1112222222 45666667654 4689999988776544332211
Q ss_pred CCceEEEecCCCEEEEEECCC-----eEEEEEcCCCce
Q 001352 625 ENPRICFNKNGTLLAVIANEN-----RIKILETPESNS 657 (1093)
Q Consensus 625 ~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~ 657 (1093)
.....+..-++++++.|+.++ .+.+||..+.+.
T Consensus 242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence 122223333677777776543 478888876643
No 322
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.78 E-value=0.31 Score=52.61 Aligned_cols=239 Identities=8% Similarity=0.008 Sum_probs=120.4
Q ss_pred CCeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEE----eccccccEEEEEeeCC---CCcEEEEEEcC------
Q 001352 398 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE----IDAHVGNVNDLAFSAP---CKQISVITCGD------ 464 (1093)
Q Consensus 398 ~~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~----~~~h~~~v~~~~~s~d---~~~l~l~s~~~------ 464 (1093)
.....|+|.|||++|.++...|.|++++... .....+.. ..........++|+|+ +.. +.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~-lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR-IWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE-EEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCE-EEEEEeCCCCCCC
Confidence 3578999999999444556789999998543 21111101 1112345789999996 554 3333222
Q ss_pred -CCcEEEEECCCC--c--eeEE-eec------CCCCeEEeeecccCCccEEEEEec-------------CCeEEEEEcCC
Q 001352 465 -DKTIKVWDAVTG--S--RTYS-FEG------HGAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDS 519 (1093)
Q Consensus 465 -d~~i~vwd~~~~--~--~~~~-~~~------h~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~vwd~~~ 519 (1093)
...|..|+...+ + .... +.. .......++|. +||.+.++.+. .|.|.-++.+.
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG 173 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG 173 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC
Confidence 235666666533 1 1111 111 11123457774 46655555433 24566666543
Q ss_pred CC------------ceEEecCCCCceEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCCee------------------
Q 001352 520 LG------------ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAI------------------ 568 (1093)
Q Consensus 520 ~~------------~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~------------------ 568 (1093)
.- ....+...-.....++|.| +|++.++ -...++...|.+. ..+.-
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i--~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIP--QKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECC--CTTCBCCTTTBCSSBCTTSSCCT
T ss_pred CCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEe--ccCCcCCCCCccCCCCCCCCccC
Confidence 20 1111222223567899999 5554443 3222211223221 11110
Q ss_pred -------------eeeeecccccCCCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCceEEEEec-CCCCCCCc
Q 001352 569 -------------KRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-GGGLPENP 627 (1093)
Q Consensus 569 -------------~~~~~~~~~~~~~v~~v~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~ 627 (1093)
+..+.. ......+.|.. ++.++++.-..+.|...++..++....... ......+.
T Consensus 251 ~~~~~~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~ 326 (353)
T 2g8s_A 251 EAKGEIVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIR 326 (353)
T ss_dssp TCCBSSCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEE
T ss_pred cccCCCCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCcee
Confidence 000110 12456677753 456666666777888888776654433221 11123578
Q ss_pred eEEEecCCCEEEEEE-CCCeE
Q 001352 628 RICFNKNGTLLAVIA-NENRI 647 (1093)
Q Consensus 628 ~v~~s~~~~~l~~~~-~dg~i 647 (1093)
.+++.|||.++++.. .+|.|
T Consensus 327 ~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 327 DVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp EEEECTTSCEEEEECSTTEEE
T ss_pred EEEECCCCcEEEEEeCCCCEE
Confidence 899999998665433 34433
No 323
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.74 E-value=0.12 Score=54.50 Aligned_cols=232 Identities=10% Similarity=0.045 Sum_probs=120.8
Q ss_pred CCCEEEEEe-C----CeEEEEEccCceeEEEECCCCCCe-EEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCcce--e
Q 001352 814 NDAYLFSAS-G----GVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEV--I 880 (1093)
Q Consensus 814 dg~~la~~~-d----g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~d~~~lasg~~dg-----~i~iwd~~~~~~--~ 880 (1093)
++.+++.|+ + ..+.+||..+.+-...-..+.... .+++.. ++++++.|+.++ .+.+||..+.+- +
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 344555554 1 458889988765322211111111 122222 567777777553 688999887642 2
Q ss_pred eecccccCCeEEEEEeCCCCEEEEEeCCC-----cEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE
Q 001352 881 SKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 955 (1093)
Q Consensus 881 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 955 (1093)
..+......-..+. -++++++.|+.++ .+.+||+.+.+-.....+ +.. .....+..-++++.+.|
T Consensus 93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~------r~~~~~~~~~~~iyv~G 162 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM--NTR------RSSVGVGVVGGLLYAVG 162 (302)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCC--SSC------CBSCEEEEETTEEEEEC
T ss_pred CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCC--CCc------ccCceEEEECCEEEEEe
Confidence 22222222222222 2677888887654 477888887653332111 111 11112222366666663
Q ss_pred -e-------CCeEEEEEcCCcceeeeeecCC-CCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceEEEecccc
Q 001352 956 -H-------ETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTA 1021 (1093)
Q Consensus 956 -~-------d~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~fs~dg~~l~t~~~d-----g~v~vwd~~~~~~~~~~~~~~ 1021 (1093)
. -..+.+||..+.+-...-.... ...... ...++++++.|+.+ ..+.+||+.+.+.... .
T Consensus 163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~--- 236 (302)
T 2xn4_A 163 GYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGV--GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV-A--- 236 (302)
T ss_dssp CEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEE--EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEE-C---
T ss_pred CCCCCCCccccEEEEEeCCCCcEEECCCCccccccccE--EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeC-C---
Confidence 2 2358899998775433211111 111112 22377888888765 3688999988755422 1
Q ss_pred ccCCCCCCCccceeEEEeCCCCCCEEEEEeCCC-----cEEEEecCCCCCCcccCC
Q 001352 1022 YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1072 (1093)
Q Consensus 1022 ~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~ 1072 (1093)
..+.. .....++.. ++..++.|+.++ .+.+||+.. .+|...+
T Consensus 237 ~~~~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~ 283 (302)
T 2xn4_A 237 DMNMC-----RRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTT--DKWTVVS 283 (302)
T ss_dssp CCSSC-----CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT--TEEEECS
T ss_pred CCCCc-----cccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCC--CeEEECC
Confidence 12222 111122222 367888888764 478888754 5688765
No 324
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=96.72 E-value=0.0013 Score=52.47 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=32.5
Q ss_pred CCchhHHHHHHHHHhhhhcChHHHHHHHHHhcCCC
Q 001352 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1093)
Q Consensus 1 ~~~~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1093)
|+....||-+||..||+|.||..||-+|+.||++.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 78899999999999999999999999999999973
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.68 E-value=0.44 Score=50.65 Aligned_cols=197 Identities=13% Similarity=0.089 Sum_probs=108.2
Q ss_pred CCeeEEEEccCCCEEEEEe-CCeEEEEEccCceeE--EEEC----CCCCCeEEEEEcCC---CCCEEEEE--eCCCeEEE
Q 001352 804 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTIM----PPSPTATSLAFNPH---DNNVIAIG--MDDSTILI 871 (1093)
Q Consensus 804 ~~v~~l~~s~dg~~la~~~-dg~i~iwd~~~~~~~--~~~~----~~~~~i~~l~~s~~---d~~~lasg--~~dg~i~i 871 (1093)
.....|+|.|||.++++-. .|.|++++..+++.. ..+. ........++|+|+ ++.+.++- ..++.|.-
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R 111 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR 111 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence 4567999999999888887 699999987655432 2221 22456789999993 24333321 24556666
Q ss_pred EEcCCc----------ce-eeecc---cccCCeEEEEEeCCCCEEEEEeC-------------CCcEEEEeCCCCceee-
Q 001352 872 YNARSS----------EV-ISKLE---GHSKRVTGLVFSDALNILVSSGG-------------DAQIFVWDVDGWGIQT- 923 (1093)
Q Consensus 872 wd~~~~----------~~-~~~l~---~h~~~V~~l~~s~dg~~l~s~s~-------------dg~i~iwd~~~~~~~~- 923 (1093)
|.+..+ +. +..+. .|. ...|+|.|||.+.++.+. .|.|.-.+.+.. ...
T Consensus 112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~-ip~~ 188 (347)
T 3das_A 112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE-PAPG 188 (347)
T ss_dssp EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS-BCTT
T ss_pred EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC-ccCC
Confidence 766542 11 11222 233 356999999998888653 233333343321 000
Q ss_pred -----eeeeecCCCcccCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCcce------------------eeeeecCC
Q 001352 924 -----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTC------------------LKQWFPIS 978 (1093)
Q Consensus 924 -----~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~--~~d~~i~vwd~~~~~~------------------~~~~~~~h 978 (1093)
..... .++. ....++|.|+|.+.++ +.++.-.|--+..|.. +..+.. +
T Consensus 189 nPf~~~~i~a--~G~R----Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~-~ 261 (347)
T 3das_A 189 NPFPGSPVYS--YGHR----NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST-D 261 (347)
T ss_dssp CSSTTCCEEE--BCCS----BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT-T
T ss_pred CCCCCCeEEe--eCCC----CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCC-C
Confidence 00111 1222 2678999999988777 3443223332222211 111111 1
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352 979 SVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus 979 ~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
......++|. +|.+++..-..+.|....+..+
T Consensus 262 ~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~ 293 (347)
T 3das_A 262 EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGT 293 (347)
T ss_dssp TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred CCCCcceEEE-cCceeeccccCCEEEEEEecCC
Confidence 1356677776 4666665555556666666554
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.63 E-value=0.17 Score=53.81 Aligned_cols=227 Identities=10% Similarity=-0.030 Sum_probs=112.7
Q ss_pred CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC-----C------CcEEEEECCCCceeEEeecCCC
Q 001352 419 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTYSFEGHGA 487 (1093)
Q Consensus 419 ~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~-----d------~~i~vwd~~~~~~~~~~~~h~~ 487 (1093)
..+.+||..+++-.. ..+.....+....+...+++ +++.|+. . ..+.+||..+++-.. +..-..
T Consensus 13 ~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~ 87 (315)
T 4asc_A 13 EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPS 87 (315)
T ss_dssp TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSS
T ss_pred CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCc
Confidence 568999998865221 22222222233333344555 5666663 1 127788988876432 211111
Q ss_pred CeE--EeeecccCCccEEEEEecC--------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCC--CCc
Q 001352 488 PVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--EGE 555 (1093)
Q Consensus 488 ~v~--~~~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~--~~~ 555 (1093)
+-. +++. . ++.+++.|+.+ ..+.+||..+.+=...-..+.......+..-+++.++.++... ...
T Consensus 88 ~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 88 PRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164 (315)
T ss_dssp CEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred chhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence 111 1111 1 44566666632 3478888876532221111222222222334666667766421 123
Q ss_pred eeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceEEEEecCCCCCCCceEE
Q 001352 556 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGLPENPRIC 630 (1093)
Q Consensus 556 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 630 (1093)
..+.+||+.+.+-...-.... ......++.+ ++..++.|+.++ .+.+||+.+.+....-..... .....+
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~ 239 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE--RSSLSL 239 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--CBSCEE
T ss_pred ceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--ccceeE
Confidence 458999998875443221111 1112222222 556666676544 588999988766554332221 122222
Q ss_pred EecCCCEEEEEECC--------------CeEEEEEcCCCcee
Q 001352 631 FNKNGTLLAVIANE--------------NRIKILETPESNSV 658 (1093)
Q Consensus 631 ~s~~~~~l~~~~~d--------------g~i~iw~~~~~~~~ 658 (1093)
..-++++++.|+.+ ..+.+||..+.+..
T Consensus 240 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 240 VSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp EEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred EEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 33367777777753 24677888776443
No 327
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.60 E-value=0.22 Score=52.91 Aligned_cols=230 Identities=10% Similarity=0.068 Sum_probs=120.6
Q ss_pred CCeEEEEEccCceeEE-EECCCCCCeEEEEEcCCCCCEEEEEeC-----C------CeEEEEEcCCcce--eeecccccC
Q 001352 823 GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD-----D------STILIYNARSSEV--ISKLEGHSK 888 (1093)
Q Consensus 823 dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~-----d------g~i~iwd~~~~~~--~~~l~~h~~ 888 (1093)
...+.+||..+.+-.. .+..+.......+... ++++++.|+. . ..+.+||..+.+- +..+.....
T Consensus 12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 3678999998776332 2222223333334444 6778888873 1 1378889887643 222221111
Q ss_pred CeEEEEEeCCCCEEEEEeCC--------CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-e-C-
Q 001352 889 RVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E- 957 (1093)
Q Consensus 889 ~V~~l~~s~dg~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~-d- 957 (1093)
.-..+.+ ++++++.|+.+ ..+.+||..+.+-..... .+.. .....+...++++++.| . +
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~------r~~~~~~~~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--LPYV------VYGHTVLSHMDLVYVIGGKGSD 160 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--CSSC------CBSCEEEEETTEEEEECCBCTT
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--CCCc------ccceeEEEECCEEEEEeCCCCC
Confidence 1122222 66777777743 358899998865332111 1111 12223333566666664 3 2
Q ss_pred ----CeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEEcCCCceEEEeccccccCCCCC
Q 001352 958 ----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQCRILSTAYLRPTTS 1028 (1093)
Q Consensus 958 ----~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~~~~ 1028 (1093)
..+.+||..+.+-...-... ..+....+..-++++++.|+.++ .+.+||+.+.+.... . ..+..
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~-- 233 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF-E---AFPQE-- 233 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEE-C---CCSSC--
T ss_pred CcccceEEEEeCCCCeEEECCCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEEC-C---CCCCc--
Confidence 46999999877543321111 11111112233778888888664 488899988754422 1 12222
Q ss_pred CCccceeEEEeCCCCCCEEEEEeCCC--------------cEEEEecCCCCCCcccCCCcccc
Q 001352 1029 CLHVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVLPPDEIV 1077 (1093)
Q Consensus 1029 ~~~v~~~~~~~~p~d~~~l~~~~~dg--------------~v~~w~~~~~~~~~~~~~~~~~~ 1077 (1093)
....+++.. ++.+++.|+.++ .+.+||+ ...+|...+|.+..
T Consensus 234 ---r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~r~ 289 (315)
T 4asc_A 234 ---RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNE--EEKKWEGVLREIAY 289 (315)
T ss_dssp ---CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET--TTTEEEEEESCSSC
T ss_pred ---ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecC--CCChhhhhccCCcC
Confidence 111122222 357888888743 3556665 44578877655533
No 328
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.48 E-value=1.2 Score=47.53 Aligned_cols=207 Identities=10% Similarity=0.046 Sum_probs=113.5
Q ss_pred CeEEEEECCCCCEEEEEE------------cCCEEEEEEccCCCc-ccceEEecc-----ccccEEEEEeeC--CCCcEE
Q 001352 399 SVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGSD-ARQQLEIDA-----HVGNVNDLAFSA--PCKQIS 458 (1093)
Q Consensus 399 ~V~~v~~s~dg~~las~~------------~d~~i~iwd~~~~~~-~~~~~~~~~-----h~~~v~~~~~s~--d~~~l~ 458 (1093)
..-.++..|+|..+++++ .+|.|.++|..+... ...+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 445566788886666552 689999999874321 2222 2333 234566777755 454213
Q ss_pred EEEEcC--CCcEEEEECCCCce----eEEeecC-CCCeEEeeecccCCccEEEEEe-----------------cCCeEEE
Q 001352 459 VITCGD--DKTIKVWDAVTGSR----TYSFEGH-GAPVYSLCPHAKENIHFIFSIS-----------------VDGKIKA 514 (1093)
Q Consensus 459 l~s~~~--d~~i~vwd~~~~~~----~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~-----------------~dg~i~v 514 (1093)
+++-.. +.+|.+|++..+.. +.++.+. -...+.+.+.+ +|.+.++.. ..|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333222 56788887765322 2334332 23466777743 555655543 1234444
Q ss_pred EEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-Cee--eeeeecccccCCCeEEEEEcC-C
Q 001352 515 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-A 590 (1093)
Q Consensus 515 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~v~~~~-~ 590 (1093)
++. .+.. .....-...+.++|+||++.++++... ...|+.|++.. +.. .+.+. . ....-.+++.+ +
T Consensus 208 ~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~---~~~I~~~~~~~~g~l~~~~~~~-~---~g~PDGi~vD~e~ 277 (355)
T 3sre_A 208 YSP--NDVR-VVAEGFDFANGINISPDGKYVYIAELL---AHKIHVYEKHANWTLTPLRVLS-F---DTLVDNISVDPVT 277 (355)
T ss_dssp ECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTTSCEEEEEEEE-C---SSEEEEEEECTTT
T ss_pred EEC--CeEE-EeecCCcccCcceECCCCCEEEEEeCC---CCeEEEEEECCCCcEecCEEEe-C---CCCCceEEEeCCC
Confidence 443 3222 222222346789999999998887642 55699998753 332 22331 1 25677889999 5
Q ss_pred CCEEEEEeCC-CcEEEEECC--CCceEEEEe
Q 001352 591 KDQILAAGDD-HVIKIWDMN--KVQLLTTID 618 (1093)
Q Consensus 591 ~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 618 (1093)
|+..+++..+ +.|..|+.. .+..+..+.
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 8877766533 344444443 234444443
No 329
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.32 E-value=0.58 Score=49.98 Aligned_cols=188 Identities=9% Similarity=0.088 Sum_probs=108.8
Q ss_pred EEEEEeeCCCCcEEEEEE------------cCCCcEEEEECCC--Ccee-EEeec-----CCCCeEEeeecccCCc--cE
Q 001352 445 VNDLAFSAPCKQISVITC------------GDDKTIKVWDAVT--GSRT-YSFEG-----HGAPVYSLCPHAKENI--HF 502 (1093)
Q Consensus 445 v~~~~~s~d~~~l~l~s~------------~~d~~i~vwd~~~--~~~~-~~~~~-----h~~~v~~~~~~~~~~~--~~ 502 (1093)
.-+++..|+|. .++++ ..+|.|.++|..+ ++.. ..+.+ .......+.+..+.++ .+
T Consensus 52 ~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 52 SEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred cceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 34566677664 44443 2689999999874 2321 12222 1235566666554334 24
Q ss_pred EEEEec--CCeEEEEEcCCCCceE----EecC-CCCceEEEEEccCCCEEEEEec---C----------CCCceeEEEEe
Q 001352 503 IFSISV--DGKIKAWLYDSLGARV----DYDA-PGLGCTRMAYSANGRRLFSCGT---S----------KEGESFLVEWN 562 (1093)
Q Consensus 503 l~s~~~--dg~i~vwd~~~~~~~~----~~~~-~~~~v~~~~~s~d~~~l~~~~~---~----------~~~~~~i~iwd 562 (1093)
+++-.. +.+|.+|+++...... .+.. .-...+.+.+.++|++.++... + +...+.|+.+|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 444333 5678888887654332 2222 2235789999999997776531 0 12346677777
Q ss_pred CCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe-CCCcEEEEECCC-CceE--EEEecCCCCCCCceEEEec-CCCE
Q 001352 563 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK-VQLL--TTIDAGGGLPENPRICFNK-NGTL 637 (1093)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~--~~~~~~~~~~~v~~v~~s~-~~~~ 637 (1093)
.. +......+. ...+.++|+||++.++.+. ..+.|+.|++.. ++.. ..+... ...-.+++.+ +|++
T Consensus 210 ~~--~~~~~~~~l----~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~---g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 210 PN--DVRVVAEGF----DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD---TLVDNISVDPVTGDL 280 (355)
T ss_dssp TT--CCEEEEEEE----SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS---SEEEEEEECTTTCCE
T ss_pred CC--eEEEeecCC----cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCC---CCCceEEEeCCCCcE
Confidence 63 332222222 4678999999998887754 678899999863 3332 233221 2245678888 5877
Q ss_pred EEEEEC
Q 001352 638 LAVIAN 643 (1093)
Q Consensus 638 l~~~~~ 643 (1093)
.+++..
T Consensus 281 wva~~~ 286 (355)
T 3sre_A 281 WVGCHP 286 (355)
T ss_dssp EEEEES
T ss_pred EEEecC
Confidence 665543
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.32 E-value=0.23 Score=61.64 Aligned_cols=233 Identities=13% Similarity=0.121 Sum_probs=140.9
Q ss_pred EEEEccCCCEEEEEeCCeEEEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC-cceeeecccc
Q 001352 808 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 886 (1093)
Q Consensus 808 ~l~~s~dg~~la~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~-~~~~~~l~~h 886 (1093)
+.-.+|..+.+|.-.+.++.|+|+++...++.+.-. .+|.-=.|-. .+.|+..+ +..|+-|++.. ..++..+..|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 445688888888888889999999988877776533 3555556653 34555555 45799999974 2444555545
Q ss_pred ----cCCeEEEEEeCCCCEEEEEe-------CCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEc--c-CCCEE
Q 001352 887 ----SKRVTGLVFSDALNILVSSG-------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH--K-DQTRF 952 (1093)
Q Consensus 887 ----~~~V~~l~~s~dg~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~-dg~~l 952 (1093)
...|..-..+++.++++..| -.|.+.+|.++.+ .-+..+||.. ....+... + ....+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~------~sQ~iegha~---~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------VSQPIEGHAA---SFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc------cchhhhHhHh---hhheeccCCCCCCceEE
Confidence 45677788899999988654 3478889988864 3444555543 12122211 1 12232
Q ss_pred EEEe----CCeEEEEEcCCc---ce------eeeeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEe
Q 001352 953 LLVH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1017 (1093)
Q Consensus 953 ~~~~----d~~i~vwd~~~~---~~------~~~~~~~--h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~ 1017 (1093)
+.+. .++++|.++... .. +...+++ -..-..++..|+.-..+...+.-|.|.++|+.||.++.+-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 2232 267888888543 11 1111111 1333346777777777888889999999999999887544
Q ss_pred ccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCC
Q 001352 1018 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1064 (1093)
Q Consensus 1018 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~ 1064 (1093)
+. ++..|... +.++..+ -++.....|.|.--.+.+.
T Consensus 297 ri--------s~~~iF~~--~~~~~~~-g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 297 RI--------SGETIFVT--APHEATA-GIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred cc--------cCCceEEe--ccCCCCC-ceEEEcCCceEEEEEEccc
Confidence 41 12233322 2232223 3444457777766666543
No 331
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.31 E-value=0.15 Score=54.08 Aligned_cols=235 Identities=11% Similarity=0.033 Sum_probs=122.0
Q ss_pred ccCCCEEEEEe-C----CeEEEEEccCceeEEE--ECCCCCCeEEEEEcCCCCCEEEEEeC----C-----CeEEEEEcC
Q 001352 812 SKNDAYLFSAS-G----GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMD----D-----STILIYNAR 875 (1093)
Q Consensus 812 s~dg~~la~~~-d----g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~----d-----g~i~iwd~~ 875 (1093)
.-++.+++.|+ + ..+.+||..+.+-... +....... +++.. ++++++.|+. + ..+.+||+.
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 34566666665 1 4589999887653222 11111112 22222 5677777775 2 368899988
Q ss_pred Ccce--eeecccccCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccC
Q 001352 876 SSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 948 (1093)
Q Consensus 876 ~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 948 (1093)
+.+- +..+......-..+.+ ++++++.|+.+ ..+.+||..+.+-..... .+... ....+..-+
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~p~~r------~~~~~~~~~ 168 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP--MLTRR------IGVGVAVLN 168 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCC--CSSCC------BSCEEEEET
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCC--CCccc------cceEEEEEC
Confidence 7642 2222221222222222 67777777644 358889998765333211 11111 111222226
Q ss_pred CCEEEEE-eC-----CeEEEEEcCCcceeeeeecCC-CCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceEEE
Q 001352 949 QTRFLLV-HE-----THLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCR 1016 (1093)
Q Consensus 949 g~~l~~~-~d-----~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~fs~dg~~l~t~~~d-----g~v~vwd~~~~~~~~~ 1016 (1093)
+++++.| .+ ..+.+||..+.+-...-.... ...-..+. -++++++.|+.+ ..+.+||+.+.+....
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 6666663 22 468999998765432211111 11112222 277788888765 4689999988754421
Q ss_pred eccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCC-----cEEEEecCCCCCCcccCCCc
Q 001352 1017 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPPD 1074 (1093)
Q Consensus 1017 ~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-----~v~~w~~~~~~~~~~~~~~~ 1074 (1093)
...+.. ....+++.. ++.+++.|+.++ .+.+||+. ..+|...++.
T Consensus 247 ----~~~p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~ 296 (308)
T 1zgk_A 247 ----APMKHR-----RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPD--TDTWSEVTRM 296 (308)
T ss_dssp ----CCCSSC-----CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT--TTEEEEEEEC
T ss_pred ----CCCCCC-----ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCC--CCEEeecCCC
Confidence 122222 111222222 367888888653 56777774 4568766443
No 332
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.31 E-value=0.043 Score=53.03 Aligned_cols=189 Identities=8% Similarity=-0.026 Sum_probs=98.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCcce-----eeecccc--cCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeee--e
Q 001352 856 DNNVIAIGMDDSTILIYNARSSEV-----ISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR--S 926 (1093)
Q Consensus 856 d~~~lasg~~dg~i~iwd~~~~~~-----~~~l~~h--~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~--~ 926 (1093)
...+|++...| +++.=...++.. ..+-.++ =..+..++|+|+|.+.+. .+|.+.-.+..+....... .
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34567777777 666544444331 0111122 236789999999987776 6665444443331111100 0
Q ss_pred eecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceee-----eee-cCCCCCEEEEEEccCCCEEEEEeCC
Q 001352 927 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-----QWF-PISSVPISQATFSCDCRMVFTSFVD 1000 (1093)
Q Consensus 927 ~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~~~-----~~~-~~h~~~v~~~~fs~dg~~l~t~~~d 1000 (1093)
...-..-.. ...++.|.|+|.+.++ .||.|+-++..+..... ... ..-=..+..|.|.|+|.+.++. |
T Consensus 80 t~IG~~Gw~---~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--d 153 (236)
T 1tl2_A 80 KKIGNGGWN---QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--G 153 (236)
T ss_dssp EEEECSCGG---GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--T
T ss_pred cEecccccc---cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--C
Confidence 000000000 1478999999999988 77988877764322111 001 1112467899999999877765 7
Q ss_pred CcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEec
Q 001352 1001 GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1061 (1093)
Q Consensus 1001 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~ 1061 (1093)
+.+.-+..+++.....+.....+.. ...+++.+ +.|.| ++.++++. +| ++|..
T Consensus 154 g~lyr~~~P~~~~~~wl~~~~~~g~--~g~~~yr~-l~f~~-~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 154 QQFYKALPPVSNQDNWLARATKIGQ--GGWDTFKF-LFFSS-VGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp TEEEEECCCSSTTCCHHHHCEEEES--SSGGGEEE-EEECT-TSCEEEEE--TT--EEEEE
T ss_pred CcEEecCCCCCCCcccccccceecc--CCcceEEE-EEECC-CCcEEEEe--CC--eEEec
Confidence 7754333333322211111111111 13345554 44888 45655555 66 44444
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.15 E-value=0.31 Score=52.84 Aligned_cols=241 Identities=12% Similarity=0.045 Sum_probs=117.6
Q ss_pred CCCEEEEEe--CCeEEEEEccC----ceeEEEEC-CCCCCeEEEEEcCCCCCEEEEEeC-C---------CeEEEEEcCC
Q 001352 814 NDAYLFSAS--GGVISLYIVMT----FKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNARS 876 (1093)
Q Consensus 814 dg~~la~~~--dg~i~iwd~~~----~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~-d---------g~i~iwd~~~ 876 (1093)
++++++.|+ ...+.+||..+ ++.+..+. .......++.+ ++++++.|+. + ..+.+||+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 777777775 36799999863 23332222 11112222333 5677777775 2 4688999987
Q ss_pred cce--eeecc-cccCCeEEEEEeCCCCEEEEEeCC---------------------------------------CcEEEE
Q 001352 877 SEV--ISKLE-GHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFVW 914 (1093)
Q Consensus 877 ~~~--~~~l~-~h~~~V~~l~~s~dg~~l~s~s~d---------------------------------------g~i~iw 914 (1093)
.+- +..+. .....-.++. .++++++.|+.+ ..+.+|
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 173 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred CcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence 642 22222 1111122222 577888888865 468899
Q ss_pred eCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-e------CCeEEEEEc--CCcceeeeeecCC-CCCEEE
Q 001352 915 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H------ETHLAIYEA--EELTCLKQWFPIS-SVPISQ 984 (1093)
Q Consensus 915 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~------d~~i~vwd~--~~~~~~~~~~~~h-~~~v~~ 984 (1093)
|..+.+-.....+ +... .....+..-++++++.| . ...+.+||+ .+.+-...-.... ......
T Consensus 174 d~~~~~W~~~~~~--p~~~-----~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 174 DPSTQQWSYAGES--PWYG-----TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp ETTTTEEEEEEEC--SSCC-----CBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred eCCCCcEEECCCC--CCCC-----cccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 9988653332111 1110 11012222356666653 2 235777876 4443222111111 111122
Q ss_pred EEEccCCCEEEEEeCC----------------------CcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCC
Q 001352 985 ATFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL 1042 (1093)
Q Consensus 985 ~~fs~dg~~l~t~~~d----------------------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~ 1042 (1093)
.+...++++++.|+.+ ..+.+||+.+.+.... ..++.. .....++..
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~----r~~~~~~~~--- 315 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS----GELSQG----RAYGVSLPW--- 315 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE----EECSSC----CBSSEEEEE---
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC----CCCCCC----cccceeEEe---
Confidence 2334477788877742 2578899987755432 122322 111122333
Q ss_pred CCCEEEEEeCCCc----EEEEecCCCCCCcccCCCcccc
Q 001352 1043 KPTQFAVGLTNGE----VYVIEPNEPGDTWAVLPPDEIV 1077 (1093)
Q Consensus 1043 d~~~l~~~~~dg~----v~~w~~~~~~~~~~~~~~~~~~ 1077 (1093)
++..++.|+.++. =-+|-+.-...+|....|.+.+
T Consensus 316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~ 354 (357)
T 2uvk_A 316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHHH 354 (357)
T ss_dssp TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-----
T ss_pred CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccccc
Confidence 3688899997642 2455455567789888887754
No 334
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.03 E-value=0.1 Score=50.40 Aligned_cols=150 Identities=9% Similarity=0.022 Sum_probs=86.4
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCccee------eec--ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q 001352 845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI------SKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 916 (1093)
Q Consensus 845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~------~~l--~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~ 916 (1093)
..++.++|+| ++.+.++ .+|.++-.+..++... ..+ .+-.. -.++.|.|+|.+.++ .||.|.-++-
T Consensus 41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 3677999999 8887776 6787777666542211 111 01112 478999999998888 5688877765
Q ss_pred CCCceeeee--eeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcce------eeeeecCCCCCEEEEEEc
Q 001352 917 DGWGIQTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC------LKQWFPISSVPISQATFS 988 (1093)
Q Consensus 917 ~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~------~~~~~~~h~~~v~~~~fs 988 (1093)
.+....... ....-.+.- ..+..+.|.|+|.+-++. ++.++-+...++.. ...+-...-..-..+.|+
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred CcCCCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 332211100 000111111 147899999999999999 88865444332221 111111223344556788
Q ss_pred cCCCEEEEEeCCCcEEEEEc
Q 001352 989 CDCRMVFTSFVDGTLSIHEA 1008 (1093)
Q Consensus 989 ~dg~~l~t~~~dg~v~vwd~ 1008 (1093)
++|.+.++. +| ++|..
T Consensus 191 ~~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 191 SVGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp TTSCEEEEE--TT--EEEEE
T ss_pred CCCcEEEEe--CC--eEEec
Confidence 998777655 66 44443
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.03 E-value=0.7 Score=48.99 Aligned_cols=227 Identities=10% Similarity=0.001 Sum_probs=109.8
Q ss_pred EEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC----CC-------cEEEEECCCCceeEE--eecCC
Q 001352 420 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTYS--FEGHG 486 (1093)
Q Consensus 420 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d~-------~i~vwd~~~~~~~~~--~~~h~ 486 (1093)
.+..||..+++-.. ..+.....+....+...++. +++.|+. ++ .+.+||..+++-... +....
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 37889988765322 12221112222233344555 6666762 12 177888877754321 11111
Q ss_pred CCeEEeeecccCCccEEEEEecC-------CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCC--Ccee
Q 001352 487 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF 557 (1093)
Q Consensus 487 ~~v~~~~~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~--~~~~ 557 (1093)
..-..+.+ ++.+++.|+.+ ..+.+||..+.+-...-..+.......+...+++.++.++.... ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11111111 44566667654 24777777654432221222221111222256777777664221 1345
Q ss_pred EEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEecCCCCCCCceEEEe
Q 001352 558 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 632 (1093)
Q Consensus 558 i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 632 (1093)
+.+||+.+.+-...-.... ......++.+ ++..++.|+.+ ..+.+||+.+.+....-..... .....+..
T Consensus 177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~ 251 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS 251 (318)
T ss_dssp EEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred EEEEcCCCCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence 8999998876543321111 0111222222 45666666643 3577899988765543222211 11222233
Q ss_pred cCCCEEEEEECC--------------CeEEEEEcCCCceee
Q 001352 633 KNGTLLAVIANE--------------NRIKILETPESNSVD 659 (1093)
Q Consensus 633 ~~~~~l~~~~~d--------------g~i~iw~~~~~~~~~ 659 (1093)
-++++++.|+.+ ..+.+||..+.+...
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 456777776643 357778887764443
No 336
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.94 E-value=0.23 Score=52.61 Aligned_cols=238 Identities=6% Similarity=-0.052 Sum_probs=116.6
Q ss_pred CCCCCEEEEEEcC----CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcC----C-----CcEEEEE
Q 001352 406 SPDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----D-----KTIKVWD 472 (1093)
Q Consensus 406 s~dg~~las~~~d----~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~----d-----~~i~vwd 472 (1093)
.-++..++.|+.+ ..+.+||..+++-.. ...+......- +++. -+++ +++.|+. + ..+.+||
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEEE-ETTE--EEEECCEEEETTEEEECCCEEEEE
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEEE-ECCE--EEEECCCcCCCCCCeecceEEEEC
Confidence 3456777777632 358899988754211 11111111111 1222 2444 5666665 2 4688899
Q ss_pred CCCCceeEE--eecCCCCeEEeeecccCCccEEEEEecC-----CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEE
Q 001352 473 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 545 (1093)
Q Consensus 473 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 545 (1093)
..+.+-... +......-..+.+ ++.+++.|+.+ ..+.+||..+..-...-..+.......+..-+++.+
T Consensus 97 ~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 172 (308)
T 1zgk_A 97 PMTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLY 172 (308)
T ss_dssp TTTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEE
T ss_pred CCCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEE
Confidence 887754321 1111111111222 44566666543 357788876643222111111111111122266777
Q ss_pred EEEecCCCC-ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEEEec
Q 001352 546 FSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDA 619 (1093)
Q Consensus 546 ~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~ 619 (1093)
+.++.++.. ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-..
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 776654322 3458899988776543321111 1112222333 55666667654 5689999988766543322
Q ss_pred CCCCCCCceEEEecCCCEEEEEECC-----CeEEEEEcCCCce
Q 001352 620 GGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESNS 657 (1093)
Q Consensus 620 ~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~ 657 (1093)
... .....+..-++++++.|+.+ ..+.+||..+.+.
T Consensus 250 p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 250 KHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp SSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCC--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 211 11222222367777777643 4577888876643
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.048 Score=57.70 Aligned_cols=198 Identities=9% Similarity=0.040 Sum_probs=109.1
Q ss_pred CEEEEEeCCCeEEEEEcCCcceeeecccc-cCCeEEEEE--eC-CCCEEEEE-eCCCcEEEEeCCCCceeeeeeeecCCC
Q 001352 858 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG 932 (1093)
Q Consensus 858 ~~lasg~~dg~i~iwd~~~~~~~~~l~~h-~~~V~~l~~--s~-dg~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~ 932 (1093)
.++++++.||.|.-.|..+|+.+.+++.. ..++....- .+ ++..++.. +.||.|..++..+|.......+..+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999888754 122222110 01 23334333 579999999988774332111111100
Q ss_pred cccCCCCceEEEE------------ccCCCEEEEEeCCeEEEEEcCCcceeeeeecCCCCC------EEEEEEc-----c
Q 001352 933 VMTLAPSETHIQF------------HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----C 989 (1093)
Q Consensus 933 ~~~~~~~v~~~~~------------s~dg~~l~~~~d~~i~vwd~~~~~~~~~~~~~h~~~------v~~~~fs-----~ 989 (1093)
..-+.. +.+|..++.+.++++...|+.+|+.+..+..+.... ..+.... .
T Consensus 91 -------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~ 163 (339)
T 2be1_A 91 -------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE 163 (339)
T ss_dssp -------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred -------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence 001221 244544445789999999999999998765442111 0011110 1
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCCc
Q 001352 990 DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1068 (1093)
Q Consensus 990 dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~ 1068 (1093)
.+..|+.+..+..+.+.+ .+|+ +..+....+.+.... ..+. .....+. |+.+ ++++.||.|..+|.......|
T Consensus 164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~-~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD-VPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT-HHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccc-cccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 235677777777777776 4564 444333333332200 0000 0000111 3444 557889999999988777778
No 338
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.66 E-value=0.62 Score=50.07 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=86.4
Q ss_pred CCeEEEEEcCCCCceEEecCC----CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe------------eeeee
Q 001352 509 DGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------------IKRTY 572 (1093)
Q Consensus 509 dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~------------~~~~~ 572 (1093)
++.||..++.....-..+..+ -..+..+..+|+|++|+..+ ...|.+..+..+. ..+.+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-----~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-----DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-----SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-----CCeEEEEEecCccccCcccccccccceeEE
Confidence 366776666644433333333 23678899999999999986 4457777766321 11122
Q ss_pred ecccc---cCCCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCc--eEEEEe-------cCCCCCCCceEEEecCCCE
Q 001352 573 QGLQL---QHNSVSVVHFDTA---KDQILAAGDDHVIKIWDMNKVQ--LLTTID-------AGGGLPENPRICFNKNGTL 637 (1093)
Q Consensus 573 ~~~~~---~~~~v~~v~~~~~---~~~l~~~~~dg~i~iwd~~~~~--~~~~~~-------~~~~~~~v~~v~~s~~~~~ 637 (1093)
.-... ...+|..+.|+|- +..|++-..|+.|++||+.... +. .+. .......+.+++|.+++-.
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lT 193 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLT 193 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSC
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcE
Confidence 22110 1367999999996 4689999999999999998622 22 222 1222245778899988777
Q ss_pred EEEEE--CCCeEEEE
Q 001352 638 LAVIA--NENRIKIL 650 (1093)
Q Consensus 638 l~~~~--~dg~i~iw 650 (1093)
|.+.+ ..|.|+-.
T Consensus 194 LYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 194 LYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEecCCCCCEEEE
Confidence 77755 66666543
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.63 E-value=0.38 Score=59.83 Aligned_cols=238 Identities=11% Similarity=0.086 Sum_probs=135.6
Q ss_pred eeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcCCE
Q 001352 341 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 420 (1093)
Q Consensus 341 ~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d~~ 420 (1093)
.-.+|..+ ++|.-. ..++.|+|+++...+..+. ...+|..=.|-.+.. |+-.+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~--------------------~~e~VvfWkWis~~~-l~lVT-~~a 126 (1630)
T 1xi4_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLNT-VALVT-DNA 126 (1630)
T ss_pred hccCCCcc-eEEEec-CCeEEEeehHHhhhhcccc--------------------cCCCceEEEecCCCe-eEEEc-CCe
Confidence 33466666 566543 5789999999887776433 235688888875544 44433 345
Q ss_pred EEEEEccCCCcccceEEeccc----cccEEEEEeeCCCCcEEEEEEc------CCCcEEEEECCCCceeEEeecCCCCeE
Q 001352 421 VQLYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVY 490 (1093)
Q Consensus 421 i~iwd~~~~~~~~~~~~~~~h----~~~v~~~~~s~d~~~l~l~s~~------~d~~i~vwd~~~~~~~~~~~~h~~~v~ 490 (1093)
|.-|++.+...... .+..| ...|..-.-+++.++ .+++|= -.|.+.+|..+.+. .+.+.||.+...
T Consensus 127 VyHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~ 202 (1630)
T 1xi4_A 127 VYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFA 202 (1630)
T ss_pred EEEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhh
Confidence 99999975432221 23333 345777778888886 333332 35788999865543 345666765554
Q ss_pred EeeecccCCccEEEE-Eec---CCeEEEEEcCCC---CceE-----EecC----CCCceEEEEEccCCCEEEEEecCCCC
Q 001352 491 SLCPHAKENIHFIFS-ISV---DGKIKAWLYDSL---GARV-----DYDA----PGLGCTRMAYSANGRRLFSCGTSKEG 554 (1093)
Q Consensus 491 ~~~~~~~~~~~~l~s-~~~---dg~i~vwd~~~~---~~~~-----~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~ 554 (1093)
.+.....+....+++ +.. .+.+++-++... .... .+.. ...-..++..++.-..+...+.
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk---- 278 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---- 278 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----
Confidence 444332222222322 222 268888888553 1111 0111 1122346666776666666654
Q ss_pred ceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 001352 555 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 613 (1093)
Q Consensus 555 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 613 (1093)
.|.+.++|+.||.++..-+-.. .+|...+......-+++....|.|.--.+.....
T Consensus 279 ~G~~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred CceEEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEccchh
Confidence 7789999999998876544333 4555444444444555555666655555544433
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.46 E-value=1.2 Score=47.19 Aligned_cols=226 Identities=13% Similarity=0.107 Sum_probs=115.5
Q ss_pred CeEEEEEccCceeEE-EECCCCCCeEEEEEcCCCCCEEEEEeC----CC-------eEEEEEcCCccee--eecccccCC
Q 001352 824 GVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD----DS-------TILIYNARSSEVI--SKLEGHSKR 889 (1093)
Q Consensus 824 g~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~----dg-------~i~iwd~~~~~~~--~~l~~h~~~ 889 (1093)
..+..||..+.+-.. .+..........+... ++.+++.|+. ++ .+.+||..+.+-. ..+......
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 457889988765433 2222222223333344 6788888873 12 2778888776432 222221111
Q ss_pred eEEEEEeCCCCEEEEEeCC-------CcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEE-e-----
Q 001352 890 VTGLVFSDALNILVSSGGD-------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H----- 956 (1093)
Q Consensus 890 V~~l~~s~dg~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~-~----- 956 (1093)
-..+.+ ++++++.|+.+ ..+.+||..+.+-.... ..+.... ...+...++++.+.| .
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r~------~~~~~~~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK--NLPIKVY------GHNVISHNGMIYCLGGKTDDKK 172 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC--CCSSCEE------SCEEEEETTEEEEECCEESSSC
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC--CCCCccc------ccEEEEECCEEEEEcCCCCCCC
Confidence 222222 67788888764 24788888876533211 1111111 122233567766663 2
Q ss_pred -CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceEEEeccccccCCCCCCC
Q 001352 957 -ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCL 1030 (1093)
Q Consensus 957 -d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1093)
-..+.+||..+.+-...-.......-.++ ..-++++++.|+.+ ..+.+||+.+.+.... ...|..
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~---- 243 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM----TEFPQE---- 243 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC----CCCSSC----
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceE-EEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC----CCCCCc----
Confidence 13599999988764332111111111112 22377888888754 3477889888754421 122222
Q ss_pred ccceeEEEeCCCCCCEEEEEeCCC--------------cEEEEecCCCCCCcccCCCc
Q 001352 1031 HVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVLPPD 1074 (1093)
Q Consensus 1031 ~v~~~~~~~~p~d~~~l~~~~~dg--------------~v~~w~~~~~~~~~~~~~~~ 1074 (1093)
....+++.. ++.+++.|+.++ .+.++|+ ...+|....|.
T Consensus 244 -r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~ 296 (318)
T 2woz_A 244 -RSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED--DKKEWAGMLKE 296 (318)
T ss_dssp -CBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEET--TTTEEEEEESC
T ss_pred -ccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeC--CCCEehhhccc
Confidence 111122222 357888887653 4666776 44568776443
No 341
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.90 E-value=4.3 Score=42.27 Aligned_cols=183 Identities=10% Similarity=0.050 Sum_probs=100.4
Q ss_pred eeeecCCCceEEEEEccC-------------CcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEEC
Q 001352 340 SMDFHPVQHTLLLVGTNV-------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 406 (1093)
Q Consensus 340 ~~~~spdg~~llasg~~d-------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s 406 (1093)
+--++++|+++..+...+ ..|+..++.+++... +.. .. +.+|+
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~~--~~~~s 112 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--DP--CIYAS 112 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--SC--EEEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--CC--ccEEE
Confidence 445689999877766544 356666766664332 111 11 23678
Q ss_pred CCCCEEEEEE--cC--CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe
Q 001352 407 PDGSLLGVAY--SK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 482 (1093)
Q Consensus 407 ~dg~~las~~--~d--~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~ 482 (1093)
+++++|+... .+ ..|..-++.+.. .+ .+..+.. .+|+++++. +..+......|.+-++..+.....+
T Consensus 113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~ 183 (302)
T 3s25_A 113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY 183 (302)
T ss_dssp EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence 8999999876 23 345555555432 22 2333432 467888885 3334444678888887766544333
Q ss_pred ecCCCCeEEeeecccCCccEEEEEecC--CeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEE
Q 001352 483 EGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 560 (1093)
Q Consensus 483 ~~h~~~v~~~~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 560 (1093)
.+ ... ..+.| ++.+|+-.... ..|..-+++..... .+.. ..+ ..++|++++|+.+.... ...|..
T Consensus 184 ~~---~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt~--~~~--~~~~~~g~~Iy~~~~~~--~~~i~~ 250 (302)
T 3s25_A 184 DC---NCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPV-VLTE--ANI--EHYNVYGSLIFYQRGGD--NPALCV 250 (302)
T ss_dssp CS---CEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCE-ECSC--SCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred CC---Ccc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeE-EEeC--CCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence 32 222 22333 44566555433 24555555544332 2221 222 34888999998764322 356777
Q ss_pred EeCCCCee
Q 001352 561 WNESEGAI 568 (1093)
Q Consensus 561 wd~~~~~~ 568 (1093)
-++.....
T Consensus 251 ~~~DG~~r 258 (302)
T 3s25_A 251 VKNDGTGF 258 (302)
T ss_dssp EETTSCCC
T ss_pred EECCCCcc
Confidence 77654433
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.80 E-value=0.88 Score=49.16 Aligned_cols=149 Identities=9% Similarity=0.000 Sum_probs=68.3
Q ss_pred CeEEEEEcCCCCceEEecCCC-Cce-EEEEEccCCCEEEEEecCCCC--ceeEEEEeC--CCCeeeeeeecccccCCCeE
Q 001352 510 GKIKAWLYDSLGARVDYDAPG-LGC-TRMAYSANGRRLFSCGTSKEG--ESFLVEWNE--SEGAIKRTYQGLQLQHNSVS 583 (1093)
Q Consensus 510 g~i~vwd~~~~~~~~~~~~~~-~~v-~~~~~s~d~~~l~~~~~~~~~--~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~ 583 (1093)
..+.+||..+..=...-..+. ... .+++. -+++.++.++.+..+ ...+..||+ .+.+-...-.... ......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~-~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSS-PDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSST-TTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCC-Cccccc
Confidence 468888887654332222221 111 22332 356666666543221 234677776 4443322211111 011111
Q ss_pred EEEEcCCCCEEEEEeCC----------------------CcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEEEEE
Q 001352 584 VVHFDTAKDQILAAGDD----------------------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI 641 (1093)
Q Consensus 584 ~v~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 641 (1093)
..+...++..++.|+.+ ..+.+||+.+.+....-..... .....+...++++++.|
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~G 323 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPWNNSLLIIG 323 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--CBSSEEEEETTEEEEEE
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--cccceeEEeCCEEEEEe
Confidence 11122245566666532 2578999988766544333222 22233444578888888
Q ss_pred ECCC------eEEEEEcCCCceeeecc
Q 001352 642 ANEN------RIKILETPESNSVDAAG 662 (1093)
Q Consensus 642 ~~dg------~i~iw~~~~~~~~~~~~ 662 (1093)
+.++ .+.++++++++.+....
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 8642 45666887776655443
No 343
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.75 E-value=1.3 Score=49.41 Aligned_cols=161 Identities=12% Similarity=0.109 Sum_probs=89.8
Q ss_pred CCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcce--eeeccc------ccCCeEEEEEeCC---CCEE-EEEeC-----
Q 001352 845 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEG------HSKRVTGLVFSDA---LNIL-VSSGG----- 907 (1093)
Q Consensus 845 ~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~--~~~l~~------h~~~V~~l~~s~d---g~~l-~s~s~----- 907 (1093)
.....++|.| +++++++-...+.|++++..+++. +..+.. ..+....|+|+|| +..| ++-+.
T Consensus 27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 4567999999 888777654445798888665543 222321 2355779999995 4444 44432
Q ss_pred -------CCcEEEEeCCCC--ceee-eeeee-cCCCcccCCCCceEEEEccCCCEEEEEeC-------------------
Q 001352 908 -------DAQIFVWDVDGW--GIQT-CRSLQ-TPDGVMTLAPSETHIQFHKDQTRFLLVHE------------------- 957 (1093)
Q Consensus 908 -------dg~i~iwd~~~~--~~~~-~~~~~-~~~~~~~~~~~v~~~~~s~dg~~l~~~~d------------------- 957 (1093)
...|.-+++..+ .... ..++. .+.... .....++|.|||.+.++..|
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~---H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p 182 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD---HQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTP 182 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS---CCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC---CCCCeEeECCCCeEEEEECCCCCCCcccccccccccccc
Confidence 234555655432 1111 11222 222111 24689999999998877322
Q ss_pred --------------CeEEEEEcCCcc-----------eeeeeecCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCCC
Q 001352 958 --------------THLAIYEAEELT-----------CLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1011 (1093)
Q Consensus 958 --------------~~i~vwd~~~~~-----------~~~~~~~~h~~~v~~~~fs~dg~~l~t~-~~dg~v~vwd~~~~ 1011 (1093)
+.|.-++.. |. ....+..+| .....++|.|+|++.++- +.++.-.|.-+..|
T Consensus 183 ~~~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G 260 (454)
T 1cru_A 183 TQQELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG 260 (454)
T ss_dssp CHHHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred ccccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence 223333332 33 223344455 457789999998866644 33444455555444
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.67 E-value=5 Score=44.66 Aligned_cols=195 Identities=11% Similarity=0.093 Sum_probs=114.5
Q ss_pred cCCCEEEEEe--CCeEEEEEccCceeEEEECC-CCCCeEEEEEc--CCCCCEEEEEeCC-------CeE---------EE
Q 001352 813 KNDAYLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFN--PHDNNVIAIGMDD-------STI---------LI 871 (1093)
Q Consensus 813 ~dg~~la~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s--~~d~~~lasg~~d-------g~i---------~i 871 (1093)
.||+||..-. +.+|...++..-++-+.+.- ....+..+.|- | +..|++++++. |.. .+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 3789999887 47788889888877666553 34577888886 6 66777776542 221 11
Q ss_pred ---EEcCCcceeeecccccCCeEEEEEeCCCCEEEEEeCCCc---------------EEEEeCCC-------Cceee---
Q 001352 872 ---YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ---------------IFVWDVDG-------WGIQT--- 923 (1093)
Q Consensus 872 ---wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~---------------i~iwd~~~-------~~~~~--- 923 (1093)
.|..+.+...++.- .+..-.+...++|++.++.+.+.. +.++++.. |+...
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 12222222222111 122333555778888877765421 55555321 11100
Q ss_pred --eeeeecCC----Ccc-----cCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcce-------------eeeeecC
Q 001352 924 --CRSLQTPD----GVM-----TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPI 977 (1093)
Q Consensus 924 --~~~~~~~~----~~~-----~~~~~v~~~~~s~dg~~l~~~--~d~~i~vwd~~~~~~-------------~~~~~~~ 977 (1093)
..++.... +.. ..+.....+.++|||++++++ -+.++.|+|.+.... .....
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 01111111 000 111345679999999999995 567899999874211 11111
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001352 978 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1011 (1093)
Q Consensus 978 h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~ 1011 (1093)
-.-.....+|.++|....|-.-|..|.-|++...
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 2456788999999955556668999999999764
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.62 E-value=2.9 Score=46.60 Aligned_cols=110 Identities=14% Similarity=0.137 Sum_probs=63.7
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcc--cCCCCceEEEEccC---CCEEEEE--e----
Q 001352 888 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETHIQFHKD---QTRFLLV--H---- 956 (1093)
Q Consensus 888 ~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~d---g~~l~~~--~---- 956 (1093)
...+.|+|.|||+++++-...+.|++++..++.... ......... ........++|+|| +..|.++ .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 356799999999988875444568888765544322 111111110 01235779999996 5555552 2
Q ss_pred --------CCeEEEEEcCCc-------ceeee-eecCCCCCEEEEEEccCCCEEEEEeC
Q 001352 957 --------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV 999 (1093)
Q Consensus 957 --------d~~i~vwd~~~~-------~~~~~-~~~~h~~~v~~~~fs~dg~~l~t~~~ 999 (1093)
...|.-|+...+ +.+.. +..........++|.|||.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234655655322 11111 11122345789999999998887654
No 346
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=94.55 E-value=0.028 Score=44.55 Aligned_cols=54 Identities=19% Similarity=0.382 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhc
Q 001352 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLS 58 (1093)
Q Consensus 5 ~~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~G~w~~~~~~l~ 58 (1093)
++|+-+-|++||..+||.+++.+|.+|.|++.+ ...=..-.|.-+|.-++.+-+
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQK 65 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK 65 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHH
Confidence 678999999999999999999999999998764 222345667777776665533
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.40 E-value=0.15 Score=53.94 Aligned_cols=195 Identities=10% Similarity=0.035 Sum_probs=104.3
Q ss_pred EEEEEcCCCcEEEEECCCCceeEEeecC-CCCeEEeeecc-cCCccEEEEE-ecCCeEEEEEcCCCCceEEecCC----C
Q 001352 458 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHA-KENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G 530 (1093)
Q Consensus 458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~~-~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~----~ 530 (1093)
+++.++.||.|.-.|..+|+.+.+++.. ..++....-.. ..++..++.. +.||.|..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5788899999999999999999988654 12332221111 1133334443 68999999998776544433221 1
Q ss_pred CceEE---EEE-----ccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccC----CCeEEEEEc-----CCCCE
Q 001352 531 LGCTR---MAY-----SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH----NSVSVVHFD-----TAKDQ 593 (1093)
Q Consensus 531 ~~v~~---~~~-----s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----~~v~~v~~~-----~~~~~ 593 (1093)
.++.. ..+ +..+..+++++. ++.++..|..+|+.+..+....... ....|.... ..+..
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 11111 000 013456666665 7789999999999998886432100 000111110 12356
Q ss_pred EEEEeCCCcEEEEECCCCceEEEEecCCCC-CCCc-----eEEEecCCCEEEEEECCCeEEEEEcCCCceee
Q 001352 594 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENP-----RICFNKNGTLLAVIANENRIKILETPESNSVD 659 (1093)
Q Consensus 594 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~-----~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 659 (1093)
++.+..+..+.+.+ ++|+ ...+...... ..+. .-..+.|+.+ ++++.||.|.-+|..++..+.
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777666666666 3343 2111100000 0000 0011234555 557888999999988876654
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.89 E-value=13 Score=40.54 Aligned_cols=259 Identities=11% Similarity=0.065 Sum_probs=122.3
Q ss_pred CCCeeEEEEcc--CCCEEEEEeCC----eEEEEEccCceeEEEEC------C--------CCCCeEEEEEcCCC-CCEEE
Q 001352 803 QEAVPCFALSK--NDAYLFSASGG----VISLYIVMTFKTILTIM------P--------PSPTATSLAFNPHD-NNVIA 861 (1093)
Q Consensus 803 ~~~v~~l~~s~--dg~~la~~~dg----~i~iwd~~~~~~~~~~~------~--------~~~~i~~l~~s~~d-~~~la 861 (1093)
...|.+|++.| ++.+++.+..| .|... ...++.-..+. . ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45688999998 66666666554 33332 22222222211 1 11247789998733 44555
Q ss_pred EEeCCCeEEEEEcCCcc---eeeeccc----------------ccCCeEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCce
Q 001352 862 IGMDDSTILIYNARSSE---VISKLEG----------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGI 921 (1093)
Q Consensus 862 sg~~dg~i~iwd~~~~~---~~~~l~~----------------h~~~V~~l~~s~d-g~~l~s~s~dg~i~iwd~~~~~~ 921 (1093)
++...+.|...+ +.|+ .+..+.. ....|.+|.+.|. ...|..+..++.|...+-.. +
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG-~- 209 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAG-T- 209 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTT-S-
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCC-C-
Confidence 566566555443 2222 2211110 1235788999873 34444444444444332222 1
Q ss_pred eeeeeeec-CCC-c-----ccCCCCceEEEEccC-CCEEEEEeCCeEEEEEcCCcceeeeeecCC-C---CCEEEEEEcc
Q 001352 922 QTCRSLQT-PDG-V-----MTLAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPIS-S---VPISQATFSC 989 (1093)
Q Consensus 922 ~~~~~~~~-~~~-~-----~~~~~~v~~~~~s~d-g~~l~~~~d~~i~vwd~~~~~~~~~~~~~h-~---~~v~~~~fs~ 989 (1093)
....+.. ... . ......+.++++.|+ ...|.++..+.|...+- .|+....+...- . ..+..+.+.|
T Consensus 210 -tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 210 -DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp -SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred -CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 1111111 000 0 000124788999986 35666666666655442 233332222111 1 3466788876
Q ss_pred -CCCEEEEEeC-----------CCcEEEEEcCC-CceEEEeccccccCCCCCCCccceeEEEeCCCCCCEEEEEeCCCcE
Q 001352 990 -DCRMVFTSFV-----------DGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1056 (1093)
Q Consensus 990 -dg~~l~t~~~-----------dg~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v 1056 (1093)
+...|.+++. ++...+|.... |+.-..+. .-++....-..+....++++|.++..|.+++.++.|
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 3333444432 33345565544 34333332 112221000112223467787555667777766664
Q ss_pred EEEecCCCCCCcccC
Q 001352 1057 YVIEPNEPGDTWAVL 1071 (1093)
Q Consensus 1057 ~~w~~~~~~~~~~~~ 1071 (1093)
|.-.+.+..|...
T Consensus 366 --~~S~D~G~tW~~~ 378 (394)
T 3b7f_A 366 --WASADEGEHWQCI 378 (394)
T ss_dssp --EEESSTTSBCEEE
T ss_pred --EEECCCCCCceEc
Confidence 4555667778754
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.63 E-value=15 Score=40.77 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=36.2
Q ss_pred CCeEEEEECCCCC-EEEEEEcCCEEEEEEccCCCcccceEEec---------cccccEEEEEeeCC
Q 001352 398 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAP 453 (1093)
Q Consensus 398 ~~V~~v~~s~dg~-~las~~~d~~i~iwd~~~~~~~~~~~~~~---------~h~~~v~~~~~s~d 453 (1093)
.....|+|.|||+ +|+++...|.|++++.........+..+. +.......|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4567899999996 56666788999999754321111111211 11456789999997
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.34 E-value=6.2 Score=46.89 Aligned_cols=196 Identities=10% Similarity=0.105 Sum_probs=106.3
Q ss_pred cCCCEEEEEeC-----CeEEEEEccCceeEEEE-C-------CCCCCeEEEEEcCCCCCEEEEEeCCC------eEEEEE
Q 001352 813 KNDAYLFSASG-----GVISLYIVMTFKTILTI-M-------PPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN 873 (1093)
Q Consensus 813 ~dg~~la~~~d-----g~i~iwd~~~~~~~~~~-~-------~~~~~i~~l~~s~~d~~~lasg~~dg------~i~iwd 873 (1093)
.++..++.|+. +.+.+||..+++-...- . .....-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 56677777652 45889998776433222 1 1112334455543 566777777543 588899
Q ss_pred cCCcc--eeeecccccCCeEEEEEeCCCCEEEEEeCCC--cEEEEeCCCCceeeeeeee-cCCCcccCCCCceEEEEccC
Q 001352 874 ARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKD 948 (1093)
Q Consensus 874 ~~~~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~d 948 (1093)
..+.+ .+..+......- +++...++++++.||.++ .+.+||..+..-....... .+.... ...++.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~----~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL----VSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCC----BSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccc----ceeEEEEeCC
Confidence 88753 222222211111 223324788999988765 6899999886532211100 111111 2334566666
Q ss_pred -CCEEEEE-e--C-----CeEEEEEcCCcce-----eeeeec--CCCCCEEEEEEccCCCEEEEEeCC--------CcEE
Q 001352 949 -QTRFLLV-H--E-----THLAIYEAEELTC-----LKQWFP--ISSVPISQATFSCDCRMVFTSFVD--------GTLS 1004 (1093)
Q Consensus 949 -g~~l~~~-~--d-----~~i~vwd~~~~~~-----~~~~~~--~h~~~v~~~~fs~dg~~l~t~~~d--------g~v~ 1004 (1093)
+++++.| . + +.+.+||+.+... ...+.. .....-.+++...++++++.||.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5555554 2 2 3589999988761 111111 111111122333447888888743 4589
Q ss_pred EEEcCCCceE
Q 001352 1005 IHEASNLEVQ 1014 (1093)
Q Consensus 1005 vwd~~~~~~~ 1014 (1093)
+||+.+....
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999988665
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.31 E-value=12 Score=38.86 Aligned_cols=217 Identities=9% Similarity=0.106 Sum_probs=118.1
Q ss_pred ecCCCceEEEEEcc-CCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEEcC---
Q 001352 343 FHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK--- 418 (1093)
Q Consensus 343 ~spdg~~llasg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~~d--- 418 (1093)
|+++|.++..+... ++.|...+.+...... +.. . .+--++++|.+|+.+...
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~--------------------l~~--~--~~~~i~~~g~~Iyy~~~~~~~ 76 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHK--------------------LSN--D--TAMYINADKNYVYYVRNNNQK 76 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEE--------------------EEE--E--EEEEEEECSSEEEEEEECC--
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEE--------------------ccC--C--ceeeEEEcCCEEEEEECCCCc
Confidence 45677766665443 4556666654443322 111 1 123457889998887543
Q ss_pred -----------CEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEE--cCCCcEEEEECCCCceeEEeecC
Q 001352 419 -----------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDKTIKVWDAVTGSRTYSFEGH 485 (1093)
Q Consensus 419 -----------~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~--~~d~~i~vwd~~~~~~~~~~~~h 485 (1093)
..|+..++.+++.. .+... . ...|+++++.+++... .....|..-++.. .....+..+
T Consensus 77 ~~~~~~~~~n~~~Iy~i~~dg~~~~----~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~ 147 (302)
T 3s25_A 77 ITSQTFFSYDRNSLCRIKRNGHGST----VLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNH 147 (302)
T ss_dssp ----CCSSCCSEEEEEEETTSCCCE----EEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESS
T ss_pred ccccceeccCCCeEEEEeCCCCcce----EeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCC
Confidence 35777777776422 12221 1 2367888885433331 2344566667653 334445444
Q ss_pred CCCeEEeeecccCCccEEEEEec-CCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001352 486 GAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 564 (1093)
Q Consensus 486 ~~~v~~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 564 (1093)
.. ..+.+ +++.|+-.+. ...|.+-++........... .. ...+.|++.+|+...... ...|..-++.
T Consensus 148 ~~----~~~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~-~~~~~P~g~~iy~t~~~~--~~~I~~~~ld 215 (302)
T 3s25_A 148 YL----FTCNT--SDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NC-YKPVVLDDTNVYYMDVNR--DNAIVHVNIN 215 (302)
T ss_dssp CC----CCSEE--ETTEEEEECTTTCCEEEEETTTTEEEEEECS---CE-EEEEEEETTEEEEEEGGG--TTEEEEECSS
T ss_pred Cc----eEeeE--ECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Cc-cceeeecCCEEEEEEcCC--CcEEEEEECC
Confidence 32 23433 4455654444 56777777766554444332 22 234669999998765422 2457777777
Q ss_pred CCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCc
Q 001352 565 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQ 612 (1093)
Q Consensus 565 ~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~--~dg~i~iwd~~~~~ 612 (1093)
.+.. ..+.. ..+ ..|+|++.+|+.+. ..+.|..-++....
T Consensus 216 G~~~-~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 216 NPNP-VVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp SCCC-EECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred CCCe-EEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 6553 33322 223 34788888887653 23566666665433
No 352
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.38 E-value=14 Score=37.82 Aligned_cols=222 Identities=13% Similarity=0.102 Sum_probs=111.7
Q ss_pred CceeeeecCCCceEEEEEccCCcEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEEEEEE
Q 001352 337 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 416 (1093)
Q Consensus 337 ~V~~~~~spdg~~llasg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~las~~ 416 (1093)
.|..++....- .++. . ||.|..|-.....++.. .......|..++...+-. ++. .
T Consensus 25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-------------------p~~~~~~i~~ia~G~~hs-~~l-~ 79 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-------------------PAATQSGVDAIAAGNYHS-LAL-K 79 (282)
T ss_dssp SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-------------------CGGGGSCCCEEEECSSEE-EEE-E
T ss_pred CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-------------------CccCCCCEEEEEeCCCEE-EEE-E
Confidence 56666665543 3444 4 78999998765433321 001123577777654332 233 4
Q ss_pred cCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEeecCCCCeEEeeecc
Q 001352 417 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 496 (1093)
Q Consensus 417 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 496 (1093)
||.|..|-......+... ..-...|..++...+-. +.-. ||.|..|-......+-.-......|..++.-
T Consensus 80 -~G~v~~wG~n~~Gqlg~P---~~~~~~v~~ia~G~~hs----~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G- 149 (282)
T 3qhy_B 80 -DGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAWAS----YALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG- 149 (282)
T ss_dssp -TTEEEEEECCTTSTTCCC---GGGSSSEEEEEEETTEE----EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC-
T ss_pred -CCEEEEeeCCCCCCCCCC---cccCCCeEEEECcCCEE----EEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc-
Confidence 899999987654333211 11234688887765533 2334 8999999754322211111123446666532
Q ss_pred cCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeeccc
Q 001352 497 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 576 (1093)
Q Consensus 497 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 576 (1093)
....++ -. ||.|..|-.....+.-.-......|..++...+...++ . ++.|+.|-......+..-..
T Consensus 150 --~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~p~~-- 216 (282)
T 3qhy_B 150 --VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTVPTE-- 216 (282)
T ss_dssp --SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCCCGG--
T ss_pred --cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCCCcc--
Confidence 222333 34 79999997655433221111123455665543332222 2 45588886543222111101
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001352 577 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 610 (1093)
Q Consensus 577 ~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~ 610 (1093)
....|..++..... .++-. ||.|+.|-...
T Consensus 217 -~~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 217 -ALSGVSAIASGEWY--SLALK-NGKVIAWGSSR 246 (282)
T ss_dssp -GGSSCCEEEECSSC--EEEEE-TTEEEEESTTC
T ss_pred -cCCCceEEEcCCCE--EEEEE-CCEEEEecCCC
Confidence 11356666655433 23333 88999986554
No 353
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=90.79 E-value=31 Score=40.69 Aligned_cols=247 Identities=8% Similarity=0.003 Sum_probs=124.8
Q ss_pred ceeee-ecCCCceEEEEEccCC----cEEEEecCCCceeEEeeeeeeecccccceeeeeeecCCC-----CCeEEEEECC
Q 001352 338 PMSMD-FHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-----VSVNRVVWSP 407 (1093)
Q Consensus 338 V~~~~-~spdg~~llasg~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~s~ 407 (1093)
...+. ++||+++++++-|..| .|+++|+.+++.+.. .|. .. ... .....++|..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~--------------~k~~~~~~~~~~~~~W~d 194 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PI--------------TNSGKLLEGKFTYPTWIN 194 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CB--------------CTTCCBCCEETCCEEEEE
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-cc--------------cccccccccccceeeEEC
Confidence 34455 8999998666655544 599999999976631 000 00 000 0112346663
Q ss_pred CCCEEEEE----------EcCCEEEEEEccCCCcccceEEecccccc-EEEEEeeCCCCcE---EEEEEcCC---CcEEE
Q 001352 408 DGSLLGVA----------YSKHIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQI---SVITCGDD---KTIKV 470 (1093)
Q Consensus 408 dg~~las~----------~~d~~i~iwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~d~~~l---~l~s~~~d---~~i~v 470 (1093)
++..+++. +....|+.|.+.+...-. ...+.+.... -..+..+++++.. .+++.+.+ ..+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 273 (711)
T 4hvt_A 195 KDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYI 273 (711)
T ss_dssp TTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEE
T ss_pred CCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEE
Confidence 33343331 112468888887653211 1134433333 2345567777641 35544322 34566
Q ss_pred EECCC--CceeEEeecCCCCeEEeeecccCCccEEEEE----------ecCCeEEEEEcCCC-------CceEE-e-cCC
Q 001352 471 WDAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSL-------GARVD-Y-DAP 529 (1093)
Q Consensus 471 wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~vwd~~~~-------~~~~~-~-~~~ 529 (1093)
.|... ++ +..+....... +.. ..++.+++.. ...+.|...++... ..... + ...
T Consensus 274 ~~~~~~~~~-~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (711)
T 4hvt_A 274 LDTKYKNLK-LQKINMPSDAT--LQG--SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA 348 (711)
T ss_dssp EECSSSSCE-EEECCSCTTCE--EEE--EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT
T ss_pred EcCCCCCCc-ceEeecCCcce--Eee--eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC
Confidence 66543 33 22332111111 111 1133344422 24677888888763 12222 2 233
Q ss_pred CCceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-eeee-eecccccCCCeEEEEEcCCCCEEEE-Ee---CCCcE
Q 001352 530 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVI 603 (1093)
Q Consensus 530 ~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~-~~---~dg~i 603 (1093)
...+..+.+..+ ..+++... ++...+.++++.++. .... +.... .+.+......+++..++. .+ .-+.+
T Consensus 349 ~~~l~~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~ 423 (711)
T 4hvt_A 349 NEVFNFISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTI 423 (711)
T ss_dssp TEEEEEEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEE
T ss_pred CCeEEEEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEE
Confidence 446778888765 34444433 346678999987775 2333 22221 135666666677655444 33 44678
Q ss_pred EEEECCCCc
Q 001352 604 KIWDMNKVQ 612 (1093)
Q Consensus 604 ~iwd~~~~~ 612 (1093)
+.+|+. ++
T Consensus 424 ~~~d~~-~~ 431 (711)
T 4hvt_A 424 YLWVKT-HE 431 (711)
T ss_dssp EEECTT-SC
T ss_pred EEEeCC-Cc
Confidence 888876 44
No 354
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=90.43 E-value=10 Score=44.90 Aligned_cols=199 Identities=13% Similarity=0.073 Sum_probs=101.7
Q ss_pred CCCCcEEEEEEcCC----CcEEEEECCCCceeEEe-e-----cCCCC-eEEeeecccC-CccEEEEEecCC------eEE
Q 001352 452 APCKQISVITCGDD----KTIKVWDAVTGSRTYSF-E-----GHGAP-VYSLCPHAKE-NIHFIFSISVDG------KIK 513 (1093)
Q Consensus 452 ~d~~~l~l~s~~~d----~~i~vwd~~~~~~~~~~-~-----~h~~~-v~~~~~~~~~-~~~~l~s~~~dg------~i~ 513 (1093)
.++. +++.||.+ ..+.+||..+++....- . ..... -.+++. .. ++.+++.|+.++ .+.
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~--~~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTT--ISRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEE--ETTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEE--EccCCEEEEEcCCCCCCCccccEE
Confidence 3445 56666643 45888898877644322 1 01111 111222 21 445677776543 467
Q ss_pred EEEcCCCCceEEecCCCCc-eEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeec--ccccCCCeEEEEEcCC
Q 001352 514 AWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTA 590 (1093)
Q Consensus 514 vwd~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~v~~~~~ 590 (1093)
+||..+..-...-..+... -.+++...+++.++.|+.+... .+.+||+.+......-.. .........++.+..+
T Consensus 472 ~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 472 IFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 7777664322211111111 1233333488888888765543 699999988765433220 1101122233555555
Q ss_pred -CCEEEEEeC--C-----CcEEEEECCCCc------eEEEEecCCCCCCC-ceEEEecCCCEEEEEEC--------CCeE
Q 001352 591 -KDQILAAGD--D-----HVIKIWDMNKVQ------LLTTIDAGGGLPEN-PRICFNKNGTLLAVIAN--------ENRI 647 (1093)
Q Consensus 591 -~~~l~~~~~--d-----g~i~iwd~~~~~------~~~~~~~~~~~~~v-~~v~~s~~~~~l~~~~~--------dg~i 647 (1093)
+..++.|+. + ..+.+||+.+.+ ........ ..+.. .+++...++++++.|+. ...+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p-~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v 628 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP-LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSI 628 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG-GGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC-CCCcccceEEEeCCCEEEEECCccCCCCCCCCCeE
Confidence 555666664 2 458899998877 22222210 01111 23333344777777764 3458
Q ss_pred EEEEcCCCce
Q 001352 648 KILETPESNS 657 (1093)
Q Consensus 648 ~iw~~~~~~~ 657 (1093)
.+||..+...
T Consensus 629 ~~yd~~t~~W 638 (695)
T 2zwa_A 629 ISLDPLSETL 638 (695)
T ss_dssp EEEETTTTEE
T ss_pred EEEECCCCeE
Confidence 8888877643
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.59 E-value=24 Score=37.63 Aligned_cols=170 Identities=12% Similarity=0.112 Sum_probs=93.7
Q ss_pred cEEEEECCCC--ceeEEeecC------CCCeEEeeec-ccC----CccEE-EEEecCCeEEEEEcCCCCceEEec----C
Q 001352 467 TIKVWDAVTG--SRTYSFEGH------GAPVYSLCPH-AKE----NIHFI-FSISVDGKIKAWLYDSLGARVDYD----A 528 (1093)
Q Consensus 467 ~i~vwd~~~~--~~~~~~~~h------~~~v~~~~~~-~~~----~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~----~ 528 (1093)
.|.+||+.++ +.++++.-. ...+..+.+. ..+ ++.++ ++-+..+.|.|+|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 4778899998 888776432 3456777776 211 12343 344456789999998876655431 1
Q ss_pred C--------------CCceEEEEEccC----CCEEEEEecCCCCceeEEEEeCC-----CCeeeeee--ecccccCCCeE
Q 001352 529 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNES-----EGAIKRTY--QGLQLQHNSVS 583 (1093)
Q Consensus 529 ~--------------~~~v~~~~~s~d----~~~l~~~~~~~~~~~~i~iwd~~-----~~~~~~~~--~~~~~~~~~v~ 583 (1093)
. ...+..++++|+ ++.|+.....+ -.+|.+. .......+ .|.......-.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-----~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~ 278 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-----IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAI 278 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-----SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-----CcEEEEEHHHhhCcchhhceEEeeecCCCCCcc
Confidence 0 136788999998 78887765432 1233222 11111111 12220012334
Q ss_pred EEEEc-CCCCEEEEEeCCCcEEEEECCC-C---ceEEEEecCCCCCCCceEEEecCCCEEEEE
Q 001352 584 VVHFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLAVI 641 (1093)
Q Consensus 584 ~v~~~-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 641 (1093)
.+++. .+|..+++--+.+.|..|+..+ . +....+...........+.+.++|.+.+..
T Consensus 279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 45675 5666666667888999999876 1 223333322233345566665555444433
No 356
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=89.38 E-value=18 Score=42.63 Aligned_cols=240 Identities=9% Similarity=-0.004 Sum_probs=117.6
Q ss_pred ECCCCCEEEEE-EcC----CEEEEEEccCCCcccceEEeccccc------cEEEEEeeCCCCcEEEEEE----------c
Q 001352 405 WSPDGSLLGVA-YSK----HIVQLYAYHGGSDARQQLEIDAHVG------NVNDLAFSAPCKQISVITC----------G 463 (1093)
Q Consensus 405 ~s~dg~~las~-~~d----~~i~iwd~~~~~~~~~~~~~~~h~~------~v~~~~~s~d~~~l~l~s~----------~ 463 (1093)
++||+++++.+ |.. ..++++|+.+++.+..... ..-.. ....++|..++. ++++. +
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~~~~~~ 213 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNEITSSL 213 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTCBCTTS
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEECCCE--EEEEeCCCCCCcCcCC
Confidence 88999998876 322 3699999999875532111 00000 113447774443 34432 1
Q ss_pred CCCcEEEEECCCCc--eeEEeecCCCCeE-EeeecccCCcc---EEEEEecC---CeEEEEEcCCCCc-eEEecCCCCce
Q 001352 464 DDKTIKVWDAVTGS--RTYSFEGHGAPVY-SLCPHAKENIH---FIFSISVD---GKIKAWLYDSLGA-RVDYDAPGLGC 533 (1093)
Q Consensus 464 ~d~~i~vwd~~~~~--~~~~~~~h~~~v~-~~~~~~~~~~~---~l~s~~~d---g~i~vwd~~~~~~-~~~~~~~~~~v 533 (1093)
....|+.|.+.+.. -...+.+....+. ......++... .+++.+.+ ..+.+.+...... ...+..+...
T Consensus 214 ~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 292 (711)
T 4hvt_A 214 YPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA- 292 (711)
T ss_dssp SBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC-
T ss_pred CCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc-
Confidence 22468888876653 2233444333332 22222232221 34444422 3355555543222 2333333321
Q ss_pred EEEEEccCCCEEEEEecCC------CCceeEEEEeCCCCe-------eeee-eecccccCCCeEEEEEcCCCCEEEEEeC
Q 001352 534 TRMAYSANGRRLFSCGTSK------EGESFLVEWNESEGA-------IKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGD 599 (1093)
Q Consensus 534 ~~~~~s~d~~~l~~~~~~~------~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~ 599 (1093)
.+..+.++.+++....+. -..+.|...++.++. ..+. +.... ...+..+.+..+ ..+++...
T Consensus 293 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-~l~~~~~~ 368 (711)
T 4hvt_A 293 -TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA--NEVFNFISTTKD-RVFLATYD 368 (711)
T ss_dssp -EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT--TEEEEEEEECSS-CEEEEEEE
T ss_pred -eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC--CCeEEEEEEECC-EEEEEEEE
Confidence 223445665555432110 025568888887642 1222 22222 346778888865 56666666
Q ss_pred CCc--EEEEECCCCc-eEEE-EecCCCCCCCceEEEecCCCEE-EEEEC---CCeEEEEEcC
Q 001352 600 DHV--IKIWDMNKVQ-LLTT-IDAGGGLPENPRICFNKNGTLL-AVIAN---ENRIKILETP 653 (1093)
Q Consensus 600 dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~~~~l-~~~~~---dg~i~iw~~~ 653 (1093)
++. +.++++.+++ .... +..... ..+.....++++..+ ++.+. -+.+..++..
T Consensus 369 ~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 369 NVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp TTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 664 6677776664 2233 333221 224444555665544 33333 3566666665
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.34 E-value=13 Score=39.75 Aligned_cols=172 Identities=13% Similarity=0.168 Sum_probs=95.2
Q ss_pred eEEEEEccCc--eeEEEECCC------CCCeEEEEEc---CC---CCCEEEEEe-CCCeEEEEEcCCcceeeecc-----
Q 001352 825 VISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE----- 884 (1093)
Q Consensus 825 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---d~~~lasg~-~dg~i~iwd~~~~~~~~~l~----- 884 (1093)
+|.+||+.+. +.++++.-+ ...+..+++. |. ++.++.... ..+.|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5677888888 887776432 2356777776 21 134555444 46789999999876543331
Q ss_pred ---------cc----cCCeEEEEEeCC----CCEEEEEeCCCcEEEEeCCCCceeee---eeeecCCCcccCCCCceEEE
Q 001352 885 ---------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHIQ 944 (1093)
Q Consensus 885 ---------~h----~~~V~~l~~s~d----g~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~ 944 (1093)
|. ...|..+++||+ ++.|.-....+ -++|.+.+.-+... ..++.. |.......-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence 11 136888999998 77777666555 35565543211110 001110 0000001123456
Q ss_pred Ec-cCCCEEEE-EeCCeEEEEEcCC-c---ceeeeeecC-CCCCEEEEEEccCCCEEEEEe
Q 001352 945 FH-KDQTRFLL-VHETHLAIYEAEE-L---TCLKQWFPI-SSVPISQATFSCDCRMVFTSF 998 (1093)
Q Consensus 945 ~s-~dg~~l~~-~~d~~i~vwd~~~-~---~~~~~~~~~-h~~~v~~~~fs~dg~~l~t~~ 998 (1093)
+. .+|.+.++ ...+.|..|+..+ . +....+... .-..+..+.+.++|.+.+++.
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 65 56776666 4778899999875 1 112222211 223466777767776655553
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=88.74 E-value=20 Score=36.77 Aligned_cols=223 Identities=13% Similarity=0.081 Sum_probs=111.3
Q ss_pred CeEEEEECCCCCEEEEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEEECCCCce
Q 001352 399 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 478 (1093)
Q Consensus 399 ~V~~v~~s~dg~~las~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~ 478 (1093)
.|..++.... ..+.-. ||.|..|-......+... ......|..++...+-. ++. . ||.|..|-......
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p---~~~~~~i~~ia~G~~hs---~~l-~-~G~v~~wG~n~~Gq 93 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMP---AATQSGVDAIAAGNYHS---LAL-K-DGEVIAWGGNEDGQ 93 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCC---GGGGSCCCEEEECSSEE---EEE-E-TTEEEEEECCTTST
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCC---ccCCCCEEEEEeCCCEE---EEE-E-CCEEEEeeCCCCCC
Confidence 5777776543 222234 899999987654333211 11233677777654432 333 4 89999997543221
Q ss_pred eEEeecCCCCeEEeeecccCCccEEEEEecCCeEEEEEcCCCCceEEecCCCCceEEEEEccCCCEEEEEecCCCCceeE
Q 001352 479 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 558 (1093)
Q Consensus 479 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 558 (1093)
+-.-..-...|..++.- . ...+.-. +|.|..|-.....+.-........|..++...+...++ . ++.|
T Consensus 94 lg~P~~~~~~v~~ia~G--~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l--~-----~G~v 161 (282)
T 3qhy_B 94 TTVPAEARSGVDAIAAG--A--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV--K-----NGGV 161 (282)
T ss_dssp TCCCGGGSSSEEEEEEE--T--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE--E-----TTEE
T ss_pred CCCCcccCCCeEEEECc--C--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE--E-----CCEE
Confidence 11111112356666542 1 2344445 99999997655433221111223455555433322222 1 3447
Q ss_pred EEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEEEecCCCCCCCceEEEecCCCEE
Q 001352 559 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 638 (1093)
Q Consensus 559 ~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 638 (1093)
+.|-......+..-... ...|..++...+ +.++- .||.|+.|-....-.+.. +.. ....|..++...+. .
T Consensus 162 ~~wG~n~~gqlg~p~~~---~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~-p~~-~~~~v~~i~~G~~h--~ 231 (282)
T 3qhy_B 162 IAWGDNYFGQTTVPAEA---QSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTV-PTE-ALSGVSAIASGEWY--S 231 (282)
T ss_dssp EEEECCTTSTTSCCGGG---GSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCC-CGG-GGSSCCEEEECSSC--E
T ss_pred EEecCCCCCCCCCceec---CCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCC-Ccc-cCCCceEEEcCCCE--E
Confidence 77765432221111111 245777776554 23333 599999997654322211 100 11235666654433 3
Q ss_pred EEEECCCeEEEEEcCCC
Q 001352 639 AVIANENRIKILETPES 655 (1093)
Q Consensus 639 ~~~~~dg~i~iw~~~~~ 655 (1093)
++.. ||.+..|-....
T Consensus 232 ~al~-~g~v~~wG~n~~ 247 (282)
T 3qhy_B 232 LALK-NGKVIAWGSSRT 247 (282)
T ss_dssp EEEE-TTEEEEESTTCC
T ss_pred EEEE-CCEEEEecCCCC
Confidence 3333 899999976543
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.53 E-value=44 Score=37.01 Aligned_cols=30 Identities=7% Similarity=0.039 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 001352 580 NSVSVVHFDTAKD-QILAAGDDHVIKIWDMN 609 (1093)
Q Consensus 580 ~~v~~v~~~~~~~-~l~~~~~dg~i~iwd~~ 609 (1093)
.....++|.|++. .++++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 3567899999986 67777889999999754
No 360
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=85.11 E-value=1 Score=41.29 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=45.9
Q ss_pred hhhhHHHhhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCcccccc
Q 001352 71 KIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHEL 129 (1093)
Q Consensus 71 ~~~~~i~~~~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 129 (1093)
.++|.|+-+.||||+..|...+|..++++.-..+.....+..++|+.+....+..+++.
T Consensus 51 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~ 109 (156)
T 2nxp_A 51 QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNET 109 (156)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHH
Confidence 38999999999999999999999999998655554445677788887766655544443
No 361
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=84.78 E-value=0.78 Score=40.94 Aligned_cols=57 Identities=14% Similarity=0.299 Sum_probs=44.1
Q ss_pred hhhhHHHhhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCccccc
Q 001352 71 KIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHE 128 (1093)
Q Consensus 71 ~~~~~i~~~~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~ 128 (1093)
.++|.|+-+.||||+..|..++|..++++.-..+... .+..++|+.+....+..+++
T Consensus 32 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~ 88 (138)
T 2j4b_A 32 PLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENN 88 (138)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCH
Confidence 3899999999999999999999999999876666555 67777777766655554443
No 362
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.76 E-value=7.7 Score=47.84 Aligned_cols=42 Identities=14% Similarity=0.068 Sum_probs=35.8
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEecccc
Q 001352 980 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1021 (1093)
Q Consensus 980 ~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~ 1021 (1093)
..+.+++..+|..+++|-+.|+++|+|++.++.++.......
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~ 277 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQ 277 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccc
Confidence 356777888899999999999999999999999998876443
No 363
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=78.07 E-value=70 Score=33.36 Aligned_cols=158 Identities=8% Similarity=0.089 Sum_probs=89.6
Q ss_pred CCCeeEEEEcc---CCCEEEEEe-CCeEEEEEccCcee-------EEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEE
Q 001352 803 QEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKT-------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 871 (1093)
Q Consensus 803 ~~~v~~l~~s~---dg~~la~~~-dg~i~iwd~~~~~~-------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~i 871 (1093)
...|..+..-+ +..+++..+ +|.++--.+..... ...+.. ...+..+.... ....|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 34455543333 466777776 69999888765322 122333 34555555554 4567778889998888
Q ss_pred EEcC--Cc---------ceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee-----eeeeeecCCCccc
Q 001352 872 YNAR--SS---------EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ-----TCRSLQTPDGVMT 935 (1093)
Q Consensus 872 wd~~--~~---------~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~ 935 (1093)
+... .- ...-.+. ....|.++...+++..|+.++..|.++.-.+..-... ....+......
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~-- 248 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR-- 248 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT--
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC--
Confidence 8776 21 1112232 3456777777667778999999999998877643211 11111111101
Q ss_pred CCCCceEEEE-ccCCCEEEEEeCCeEEEEEcCC
Q 001352 936 LAPSETHIQF-HKDQTRFLLVHETHLAIYEAEE 967 (1093)
Q Consensus 936 ~~~~v~~~~~-s~dg~~l~~~~d~~i~vwd~~~ 967 (1093)
+.+..+.. ..+...++++.+|.+.-++...
T Consensus 249 --d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 249 --GRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp --CSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred --CeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 12333333 3344455557777777777653
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=76.36 E-value=47 Score=40.82 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=31.8
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec
Q 001352 846 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 883 (1093)
Q Consensus 846 ~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l 883 (1093)
.+.+++..+ +..++++-+.|+++|+|++.+++++.+.
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 567777777 7889999999999999999999887654
No 365
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=76.13 E-value=0.63 Score=42.04 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=36.1
Q ss_pred hhhhHHHhhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcccCc
Q 001352 71 KIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDI 124 (1093)
Q Consensus 71 ~~~~~i~~~~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~ 124 (1093)
.++|.|+-+.||||+..| ..+|..++++.-..+.....+..++|+.+....+.
T Consensus 34 ~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl 86 (148)
T 2j49_A 34 YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHI 86 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHH
Confidence 489999999999999999 99999999875443322223334444444433333
No 366
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=72.80 E-value=1.1e+02 Score=32.93 Aligned_cols=162 Identities=14% Similarity=0.163 Sum_probs=80.0
Q ss_pred eEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCE
Q 001352 738 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 817 (1093)
Q Consensus 738 i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 817 (1093)
+..++++......++...+|.+..|-.......-.+.......+ .....+ ....|..++.. ....
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p----------~~v~~l----~~~~i~~va~G-~~hs 171 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRP----------RVIESL----RGIEVVDVAAG-GAHS 171 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEE----------EECGGG----TTSCEEEEEEC-SSEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCC----------eEeccc----CCCeEEEEEeC-cCeE
Confidence 44455666666677777888888886443221111110000000 000001 12245555432 2333
Q ss_pred EEEEeCCeEEEEEccCc-----------eeEEEECC-CCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-c------
Q 001352 818 LFSASGGVISLYIVMTF-----------KTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-E------ 878 (1093)
Q Consensus 818 la~~~dg~i~iwd~~~~-----------~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~-~------ 878 (1093)
++...+|.|..|-.... .....+.. ....|..++... +..+.+.-..||.|+.|-.... +
T Consensus 172 ~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~ 250 (389)
T 3kci_A 172 ACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGGS 250 (389)
T ss_dssp EEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSSC
T ss_pred EEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCCC
Confidence 44445677777764321 01111211 223577777654 3456667788999999965431 1
Q ss_pred ----eeeeccc-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 001352 879 ----VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 917 (1093)
Q Consensus 879 ----~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~ 917 (1093)
....+.. ....|..++... .+.+....||.|..|-..
T Consensus 251 ~~~~~p~~v~~~~~~~v~~v~~G~--~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 251 DGCKVPMKIDSLTGLGVVKVECGS--QFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp CCEEEEEECGGGTTSCEEEEEEET--TEEEEEETTSCEEEEECC
T ss_pred CCccccEEecccCCCcEEEEeCCC--CEEEEEeCCCeEEEEeCC
Confidence 1111221 122466666543 344445689999999764
No 367
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=67.42 E-value=1.1e+02 Score=30.92 Aligned_cols=191 Identities=7% Similarity=0.021 Sum_probs=103.4
Q ss_pred EEccCCCEEEEEeCCeEE---EEEccCceeEEEECCCCCCeEEEEEcCC-CCCEEEEEeCCCeEEEEEcCCcc------e
Q 001352 810 ALSKNDAYLFSASGGVIS---LYIVMTFKTILTIMPPSPTATSLAFNPH-DNNVIAIGMDDSTILIYNARSSE------V 879 (1093)
Q Consensus 810 ~~s~dg~~la~~~dg~i~---iwd~~~~~~~~~~~~~~~~i~~l~~s~~-d~~~lasg~~dg~i~iwd~~~~~------~ 879 (1093)
..+....+++..+.|.++ +|++..++... +......|..+.. ++ +..+++..+.+|.++-..+..-. .
T Consensus 31 ~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~ 108 (276)
T 3no0_A 31 RVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMP 108 (276)
T ss_dssp EEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEE
T ss_pred EECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeE
Confidence 344444555555667654 44554332211 2224456666644 32 35689999999999999876532 1
Q ss_pred eeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce-----eeeeeeecCCCcccCCCCceEEEEccCCCEEEE
Q 001352 880 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI-----QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 954 (1093)
Q Consensus 880 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 954 (1093)
...++ ..+.+..+....+...++..+..|.+..+....-.. .....+....+ ..|.++...+++..++.
T Consensus 109 ~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~~~~ll~ 182 (276)
T 3no0_A 109 IIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNGEPYLLV 182 (276)
T ss_dssp CSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESSCSEEEE
T ss_pred EEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCCCCEEEE
Confidence 22233 234566666666667888889999888777643110 01111211111 24556555555555444
Q ss_pred -EeCCeEEEEEcCCcce-------eeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEE--EEcCC
Q 001352 955 -VHETHLAIYEAEELTC-------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI--HEASN 1010 (1093)
Q Consensus 955 -~~d~~i~vwd~~~~~~-------~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~v--wd~~~ 1010 (1093)
+..|.++...+..-.. +..+ ...+.+..+....+...++..+.+|.+.. +++..
T Consensus 183 ~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 183 ITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 7778888877643221 1111 12344555444333345555666777666 66544
No 368
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=66.98 E-value=1.2e+02 Score=31.22 Aligned_cols=151 Identities=11% Similarity=0.069 Sum_probs=80.4
Q ss_pred CCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEE-EccCCCEEEEEeCC
Q 001352 746 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA-LSKNDAYLFSASGG 824 (1093)
Q Consensus 746 ~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~-~s~dg~~la~~~dg 824 (1093)
+...++..+.+|.++.-.+..- ......-.....+.. . ..+..+. ...+..+++..+.|
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~-----------------~~~~r~G~~~i~l~~--~-d~lv~~~~~~~~~~i~l~T~~G 167 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEF-----------------NRLRTAGKVAIKLVD--G-DELIGVDLTSGEDEVMLFSAEG 167 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGG-----------------TTCCTTCEESSCCCT--T-CCEEEEEEECTTCEEEEEETTS
T ss_pred CCcEEEEEeCCCeEEEEEHHHh-----------------hccccCCeEEEEECC--C-CEEEEEEEeCCCCEEEEECCCC
Confidence 4556888899999887654321 111111112222221 2 3444433 34444555555578
Q ss_pred eEEEEEccCcee---------EEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc---------eeeecccc
Q 001352 825 VISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGH 886 (1093)
Q Consensus 825 ~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~---------~~~~l~~h 886 (1093)
.+..+....-.. .-.+. ....|.++.... ++..|++.+..|.++-.++.... ....+..-
T Consensus 168 ~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~-~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~ 245 (307)
T 1zi0_A 168 KVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 245 (307)
T ss_dssp EEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCC-SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTT
T ss_pred cEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEec-CCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCC
Confidence 877777643211 11222 334666666555 45678888999999888774321 11223323
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352 887 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 887 ~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 918 (1093)
.+.+..+....+...++..+.+|.+.-..++.
T Consensus 246 ~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 246 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 35565555544445566666777666666554
No 369
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=66.62 E-value=1.1e+02 Score=30.81 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=71.6
Q ss_pred CCCeeEEEEcc-CCCEEEEEe-CCeEEEEEccCce------eEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001352 803 QEAVPCFALSK-NDAYLFSAS-GGVISLYIVMTFK------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 874 (1093)
Q Consensus 803 ~~~v~~l~~s~-dg~~la~~~-dg~i~iwd~~~~~------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~ 874 (1093)
...|..+.... +..+++..+ +|.++-..+.... ....+. ....+..+.... +...|+..+..|.+..++.
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~-~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSV-DETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECC-SSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeC-CCCEEEEEECCCEEEEEEh
Confidence 44555554321 456777776 6999988876532 112233 234566666655 5567888899999888876
Q ss_pred CC---------cceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352 875 RS---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 875 ~~---------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 918 (1093)
.. |...-.+. ....|.++...+++..++..+..|.++...++.
T Consensus 145 ~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp GGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred hhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 43 11112233 235677766666677889999999999888764
No 370
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=60.81 E-value=18 Score=41.38 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=42.0
Q ss_pred ceEEEEccCCCEEEEEe-------------CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEE
Q 001352 940 ETHIQFHKDQTRFLLVH-------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS 997 (1093)
Q Consensus 940 v~~~~~s~dg~~l~~~~-------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~ 997 (1093)
.-.|+|+|+|++++... .+.+.+.+..+++..+-+.......++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 45699999999666521 12456667777776655444447899999999999988866
No 371
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=59.40 E-value=1.6e+02 Score=30.24 Aligned_cols=202 Identities=12% Similarity=0.082 Sum_probs=106.7
Q ss_pred CCCccceeecccccceecceeeccCccc---cccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCc
Q 001352 697 EDVKPEISVEAENKSEVEKPLFARPSEC---QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 773 (1093)
Q Consensus 697 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~---~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~ 773 (1093)
++...++..+.+|.++--.+..-..... -...+. ....+.+..+........++..+..|.++-.....- +..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~-lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~i---p~~ 81 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFD-LNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEI---KDS 81 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCC-CCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGS---CC-
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecc-cCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHC---CCC
Confidence 4566777888888887655432211110 000000 013345556666666667888888887765543210 000
Q ss_pred ccccccCCcccCCCCCCcee-eccCCCCCCCCCeeEEEEcc---CCCEEEEEe-CCeEEEEEccCc-------eeEEEEC
Q 001352 774 EATTKVPPRLYQPRHGPQFM-VNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTF-------KTILTIM 841 (1093)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~s~---dg~~la~~~-dg~i~iwd~~~~-------~~~~~~~ 841 (1093)
... ..|..+. ...+ .....+..+...+ +..+++..+ .|.++...+... .....+.
T Consensus 82 ~r~----------~~G~~i~~~l~l---~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~ 148 (312)
T 1suu_A 82 SRA----------SKGQNISELINL---GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN 148 (312)
T ss_dssp ----------------CBGGGTSCC---CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC
T ss_pred Ccc----------CCCcChhhccCC---CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC
Confidence 000 0111100 0111 1233444443332 344455554 698888877533 2222233
Q ss_pred CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---------ceeeecccccCCeEEEEEeCCCCEEEEEeCCCcEE
Q 001352 842 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---------EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 912 (1093)
Q Consensus 842 ~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~---------~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~i~ 912 (1093)
. ...+..+.... ++..++..+.+|.+..+....- ...-.+. ..+.|.++...+++..+++.+..|..+
T Consensus 149 ~-~d~lv~~~~~~-~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~k 225 (312)
T 1suu_A 149 D-KDFVTSAEIVF-KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGK 225 (312)
T ss_dssp T-TCCEEEEEEEC-TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEE
T ss_pred C-CCEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceE
Confidence 3 45566665554 4567888999999999887541 1122233 245567766666667788889999999
Q ss_pred EEeCCC
Q 001352 913 VWDVDG 918 (1093)
Q Consensus 913 iwd~~~ 918 (1093)
...++.
T Consensus 226 r~~~~e 231 (312)
T 1suu_A 226 RLNMSK 231 (312)
T ss_dssp EEEGGG
T ss_pred EEEHHH
Confidence 888864
No 372
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=58.17 E-value=42 Score=28.89 Aligned_cols=98 Identities=11% Similarity=0.106 Sum_probs=52.7
Q ss_pred hhhhcChHHHHHHHHHhcCCChh-H----HHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhhhhhccCCC
Q 001352 15 FLNEEGFTESAHMLERESRFYFD-M----KFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHD 89 (1093)
Q Consensus 15 ~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~ 89 (1093)
|++.--|.++...+++=-.+..+ . ..=.-....|+|++|+..+.+...++.+.. .+.+. .=.=+...|+
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~a~~~----lg~~~~~~~~ 96 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI--KGYIR----KAACLVAMRE 96 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHH----HHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh--HHHHH----HHHHHHHCCC
Confidence 34444488888777764444332 1 111234456888888888776423322211 12211 1112345688
Q ss_pred HHHHHHHHHhhccccCCCCHHHHHHHHHhh
Q 001352 90 IAKALNILKKDLKDFAPGNEELFKELAQLL 119 (1093)
Q Consensus 90 ~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~ 119 (1093)
+.+|+..+++-+. +.+.+++-...|..++
T Consensus 97 ~~~A~~~~~~al~-l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 97 WSKAQRAYEDALQ-VDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHH-HCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-HCcCCHHHHHHHHHhc
Confidence 8888888887554 3334555555565543
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=58.14 E-value=27 Score=39.25 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=42.9
Q ss_pred CceEEEEccCCCEEEEEe-------------CCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEe
Q 001352 939 SETHIQFHKDQTRFLLVH-------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 998 (1093)
Q Consensus 939 ~v~~~~~s~dg~~l~~~~-------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~ 998 (1093)
....|+|.++|.+.+... .+.+..++..+|+..+.+.......++.++||||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 466899999999887421 125777777778765543322356799999999999888764
No 374
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=57.92 E-value=1.3e+02 Score=34.82 Aligned_cols=35 Identities=11% Similarity=0.250 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeecc
Q 001352 847 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 884 (1093)
Q Consensus 847 i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l~ 884 (1093)
|.++.+ +..+|++-+.|.++|+|++.+++++....
T Consensus 224 Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 224 ISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 444444 46799999999999999999999876644
No 375
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=57.74 E-value=71 Score=32.60 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhhhhcC-hHHHHHHHHH--hcCCChh---HHHH--HHHhcCcCHHHHHHHhccCCCcCCccccchhhhHH
Q 001352 5 NKDLVFLILQFLNEEG-FTESAHMLER--ESRFYFD---MKFF--EDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEI 76 (1093)
Q Consensus 5 ~~~~~~li~q~L~~~g-~~~s~~~L~~--Esg~~~~---~~~~--~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1093)
.-+.++++.+++...| +.++...|++ +.++..+ +..+ .-....|++++|+..+.+ +.+. .+.+.+
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~---~~~~~l 136 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSL---ECMAMT 136 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSH---HHHHHH
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCH---HHHHHH
Confidence 3456777888888877 7777777776 3333222 2111 334566888888888775 1111 111111
Q ss_pred HhhhhhhhccCCCHHHHHHHHHhh
Q 001352 77 RKQNFFEALDGHDIAKALNILKKD 100 (1093)
Q Consensus 77 ~~~~~lEll~~~~~~~A~~~l~~~ 100 (1093)
-.=++..|+..+|...+++-
T Consensus 137 ----~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 137 ----VQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp ----HHHHHHTTCHHHHHHHHHHH
T ss_pred ----HHHHHHCCCHHHHHHHHHHH
Confidence 11134566677777776664
No 376
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=56.77 E-value=2.1e+02 Score=30.57 Aligned_cols=194 Identities=9% Similarity=0.079 Sum_probs=95.1
Q ss_pred eeEEEEccCCC-EEEEEeCCeEEEEEccCc-----------eeEEEECCC-CCCeEEEEEcCCCCCEEEEEeCCCeEEEE
Q 001352 806 VPCFALSKNDA-YLFSASGGVISLYIVMTF-----------KTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIY 872 (1093)
Q Consensus 806 v~~l~~s~dg~-~la~~~dg~i~iwd~~~~-----------~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~i~iw 872 (1093)
+..++++.... .++...+|.|..|-.... .....+... ...|..++.. ....+.-..+|.|+.|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEEe
Confidence 44445544333 333444677777754321 111222211 2256666664 4566667889999999
Q ss_pred EcCC-cce----------eeeccc-ccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce---------eeeeeeecCC
Q 001352 873 NARS-SEV----------ISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI---------QTCRSLQTPD 931 (1093)
Q Consensus 873 d~~~-~~~----------~~~l~~-h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~---------~~~~~~~~~~ 931 (1093)
-... +++ ...+.. ....|..++......+.+....||.|..|-....-. .....+..+.
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 263 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC
Confidence 7543 110 111111 223566666654335666667899999996543110 0111111111
Q ss_pred CcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcce-----------eeeeecCCCCCEEEEEEccCCCEEEEEeCC
Q 001352 932 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC-----------LKQWFPISSVPISQATFSCDCRMVFTSFVD 1000 (1093)
Q Consensus 932 ~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~-----------~~~~~~~h~~~v~~~~fs~dg~~l~t~~~d 1000 (1093)
+ ..|..++.... ..++...++.|+.|=...... ...+.......|..++.. ....+....|
T Consensus 264 ~-----~~v~~v~~G~~-hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~ 335 (389)
T 3kci_A 264 G-----LGVVKVECGSQ-FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTED 335 (389)
T ss_dssp T-----SCEEEEEEETT-EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETT
T ss_pred C-----CcEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCC
Confidence 1 12333333222 223346788888886542111 111111113356666543 3344455789
Q ss_pred CcEEEEEcCC
Q 001352 1001 GTLSIHEASN 1010 (1093)
Q Consensus 1001 g~v~vwd~~~ 1010 (1093)
|.|..|=...
T Consensus 336 G~v~~wG~n~ 345 (389)
T 3kci_A 336 GEVYTWGDND 345 (389)
T ss_dssp CCEEEEECCT
T ss_pred CCEEEeeCCC
Confidence 9999997643
No 377
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=55.59 E-value=2e+02 Score=29.91 Aligned_cols=255 Identities=11% Similarity=0.096 Sum_probs=121.4
Q ss_pred CEEEEEeCCCcEEEEECCCCc-------eEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCceeeecccc
Q 001352 592 DQILAAGDDHVIKIWDMNKVQ-------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL 664 (1093)
Q Consensus 592 ~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 664 (1093)
..+++.+.+|.|+--.+.+.+ -...+..... ..+..+........++.-+..|.++......-.... ....
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~-D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~-r~~~ 81 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQD-DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEAS-RTAR 81 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGG-GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCC-SSSC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCC-ccCC
Confidence 456777888888765433211 1111111111 123444444556667777777877766543221110 0001
Q ss_pred cccce-eeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecceeeccCcc---ccccccCccccccceEE
Q 001352 665 SDNLR-KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE---CQSLLLPSKVKANKISR 740 (1093)
Q Consensus 665 ~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~---~~~~~~~~~~~~~~i~~ 740 (1093)
..++. -+.+.+.....++- .+ ..-++..+++..+..|.++.-.+..-.... ...+.+. ..+.+..
T Consensus 82 G~~i~~~l~l~~~e~i~~~~------~~--~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lk---e~D~lv~ 150 (327)
T 3uc1_A 82 GQHVANLLAFQPEERIAQVI------QI--RGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR---DNDELVG 150 (327)
T ss_dssp CEEHHHHTTCCTTCCEEEEE------EE--SSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCC---TTCCEEE
T ss_pred CEEHHHccCCCCCCEEEEEE------Ee--ccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEEC---CCCEEEE
Confidence 11110 01111222221110 01 001356788889999988876644322211 1111121 2445666
Q ss_pred EEeecCCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEE
Q 001352 741 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 820 (1093)
Q Consensus 741 l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~ 820 (1093)
+........++..+..|.+..+..........+.. ..|... ..+ .....|.++...+++.+++.
T Consensus 151 ~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~-----------a~Gv~~--i~L---~~~d~Vv~~~~~~~~~~ll~ 214 (327)
T 3uc1_A 151 AVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA-----------TSGVQG--MRF---NIDDRLLSLNVVREGTYLLV 214 (327)
T ss_dssp EEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT-----------SBCEES--SCC---CTTCCEEEEEECCTTCEEEE
T ss_pred EEEecCCCEEEEEECCCeEEEEECcccccCcCCcC-----------CCCeee--ecC---CCCCEEEEEEEECCCCEEEE
Confidence 66666667788889998887776541011001110 011111 112 13445666665555556666
Q ss_pred Ee-CCeEEEEEccCcee-------EEE--ECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001352 821 AS-GGVISLYIVMTFKT-------ILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 876 (1093)
Q Consensus 821 ~~-dg~i~iwd~~~~~~-------~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~ 876 (1093)
.+ .|.++.-.+..... +.. +..-.+.+..+.... +...++..+.+|.+.-++...
T Consensus 215 ~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 215 ATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVD-DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGGG
T ss_pred EeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeC-CCccEEEEcCCCeEEEEehhh
Confidence 65 68888877653322 122 222234455554444 445666677788877777654
No 378
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=54.87 E-value=15 Score=32.24 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=26.6
Q ss_pred CchhHHHHHHHHHhhhhcCh-HHHHHHHHHhcCCChh
Q 001352 2 SKLNKDLVFLILQFLNEEGF-TESAHMLERESRFYFD 37 (1093)
Q Consensus 2 ~~~~~~~~~li~q~L~~~g~-~~s~~~L~~Esg~~~~ 37 (1093)
+....+|...|+..|.+.|| ..+...+.++-|++.+
T Consensus 18 ~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~ 54 (130)
T 2k9m_A 18 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE 54 (130)
T ss_dssp CSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH
Confidence 34556788999999999997 4566667777776554
No 379
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=52.75 E-value=32 Score=39.89 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=30.3
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEecc
Q 001352 981 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1019 (1093)
Q Consensus 981 ~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~ 1019 (1093)
.|.++. .+..+|+|-+.|.++|+|++.++.++.....
T Consensus 223 ~Is~~~--~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKL--FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEec--cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 344444 4578999999999999999999998887765
No 380
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.49 E-value=4.9 Score=50.91 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=35.0
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEecccccc
Q 001352 981 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL 1023 (1093)
Q Consensus 981 ~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~ 1023 (1093)
.+.+++..++..+++|-+.|+++|+|++.++.++.........
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~~~~ 281 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTI 281 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECCCSS
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechhhcC
Confidence 3445566788899999999999999999999999887654433
No 381
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=50.10 E-value=55 Score=41.30 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcceeeec
Q 001352 846 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 883 (1093)
Q Consensus 846 ~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~~~~~l 883 (1093)
.+.+++..+ +..++++-+.|+++|+|++.+++++.+.
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 445566666 7889999999999999999999887653
No 382
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=49.60 E-value=3.2e+02 Score=30.61 Aligned_cols=296 Identities=14% Similarity=0.102 Sum_probs=147.4
Q ss_pred CCCCceeeeecCCCceEEEEEccCCc----------------------------EEEEecCCCceeEEeeeeeeeccccc
Q 001352 334 GSSSPMSMDFHPVQHTLLLVGTNVGD----------------------------TGLWDVNSGQKLFIRNFKVWDIGACS 385 (1093)
Q Consensus 334 h~~~V~~~~~spdg~~llasg~~dg~----------------------------i~iwd~~~~~~~~~~~~~~~~~~~~~ 385 (1093)
|-..+....|.-||+.=+++...+|+ +.|+|=.||+.+....+..-.-..+.
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 56678899999999876777777665 78888888888865443100000000
Q ss_pred ceeeeeeecCCCCC--eEEEEECCCC--CEEEEEE---cCCEEEEEEccCCCcccceEEeccc-----------cccEEE
Q 001352 386 MLFKTALVRDPGVS--VNRVVWSPDG--SLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAH-----------VGNVND 447 (1093)
Q Consensus 386 ~~~~~~~~~~h~~~--V~~v~~s~dg--~~las~~---~d~~i~iwd~~~~~~~~~~~~~~~h-----------~~~v~~ 447 (1093)
.- - -.++... ..++++- || -.++.+- ....|..||...++... ...+... .....-
T Consensus 257 WG--D--~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~-~W~~d~~~~~~~~~~gqg~h~~~v 330 (591)
T 2zux_A 257 WG--D--SYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSK-LWTLDSSKSGNEAFAGQGNHNLSI 330 (591)
T ss_dssp GT--C--SSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEE-EEEEETTSTTCGGGSSCCCSCCEE
T ss_pred cc--c--ccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEE-EEEecCCCCCcccccccCCCCCee
Confidence 00 0 0000000 1223321 22 1222221 12245666665543211 1111110 123444
Q ss_pred EEeeCCCCcEEEEEEcCCCcEEEEECCCCceeEEe-ecCCCCeEEeeecccCCccEEEEEecCC----eEEEEEcCCCCc
Q 001352 448 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGA 522 (1093)
Q Consensus 448 ~~~s~d~~~l~l~s~~~d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~ 522 (1093)
..+..||+. -++.|+. ++| ..|+.+.+. .+|...+....|.|+..|.-++.+..++ -..+.|..+++.
T Consensus 331 aDVDgDG~d-EIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~v 403 (591)
T 2zux_A 331 ADVDGDGKD-EIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKI 403 (591)
T ss_dssp ECCSSSSSC-EEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCE
T ss_pred EeCCCCCCc-eEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcE
Confidence 556677765 3554441 344 455555544 3688888777787776677777776652 344578888888
Q ss_pred eEEecCC--CCceEEEEEccCCC--EEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe
Q 001352 523 RVDYDAP--GLGCTRMAYSANGR--RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 598 (1093)
Q Consensus 523 ~~~~~~~--~~~v~~~~~s~d~~--~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 598 (1093)
+...... .+......|.|+.. .+.+ . -.+++. +|+.+.... . ...-..+-|..+...-+.-
T Consensus 404 lw~~~~~~d~Gr~~~~Didp~~pG~E~w~--~-------~~l~~~-~G~~i~~~~--p--~~~N~~i~WdGDl~relld- 468 (591)
T 2zux_A 404 LWGVYAGKDVGRGMAADIDPRYPGQEVWA--N-------GSLYSA-KGVKIGSGV--P--SSTNFGIWWDGDLLREQLD- 468 (591)
T ss_dssp EEEECCSSCCCCEEEECCCTTSSSCEEEE--T-------TEEECT-TSCBCSSCC--C--SCCSEEECCSSSSSCEEEE-
T ss_pred EEEcCCCCCCCceeEEecCCCCCceEEEe--c-------CceECC-CCCEecCCC--C--CCcceeEEECCCCcHhhhC-
Confidence 7766543 23333344555422 2222 1 134553 344433221 1 0112346677665333332
Q ss_pred CCCcEEEEECCCCceEEEEecCC-----CCCCCceEEEe--cCC--CEEEEEECCCeEEEEEcCCCcee
Q 001352 599 DDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFN--KNG--TLLAVIANENRIKILETPESNSV 658 (1093)
Q Consensus 599 ~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s--~~~--~~l~~~~~dg~i~iw~~~~~~~~ 658 (1093)
.+.|.-|+..+++....+...+ .+..-.++... -|. ..+.-..++..++||........
T Consensus 469 -~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~pt~~ 536 (591)
T 2zux_A 469 -SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIPTEH 536 (591)
T ss_dssp -TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCCCSC
T ss_pred -CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCCCCcc
Confidence 2368889988777444444321 11222334433 232 23333445667999987655433
No 383
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=49.33 E-value=2.4e+02 Score=29.03 Aligned_cols=109 Identities=8% Similarity=0.058 Sum_probs=60.0
Q ss_pred CCceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEc-cCCCEEEEEeCC
Q 001352 746 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSASGG 824 (1093)
Q Consensus 746 ~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~la~~~dg 824 (1093)
+...++..+.+|.++...+..-... . ..| .....+. ....+..+... ++..+++...+|
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~--------------r-~~G--~~~i~L~---~~d~lv~~~~~~~~~~i~l~T~~G 172 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAV--------------K-SRG--VIVIKLN---DKDFVTSAEIVFKDEKVICLSKKG 172 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC-------------------C--EECBCCC---TTCCEEEEEEECTTCEEEEEETTS
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhcc--------------C-CCc--EEEEecC---CCCEEEEEEEeCCCCEEEEEeCCC
Confidence 3566888888888877654321100 0 111 2222232 23444444444 444455555578
Q ss_pred eEEEEEccCc---------eeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001352 825 VISLYIVMTF---------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 876 (1093)
Q Consensus 825 ~i~iwd~~~~---------~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~ 876 (1093)
.+..+....- .....+. ....+..+.... ++..|++.+..|.....++..
T Consensus 173 ~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 173 SAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVK-ENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECT-TCSEEEEEETTSEEEEEEGGG
T ss_pred cEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEEC-CCCeEEEEECCCceEEEEHHH
Confidence 8888877542 1122233 244566666555 456788889999999988854
No 384
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=49.27 E-value=2.7e+02 Score=29.63 Aligned_cols=262 Identities=8% Similarity=0.012 Sum_probs=115.9
Q ss_pred CCCeEEEEECC--CCCEEEEEEcCC----EEEEEEccCCCcccceEE---ecc--------ccccEEEEEeeCC--CCcE
Q 001352 397 GVSVNRVVWSP--DGSLLGVAYSKH----IVQLYAYHGGSDARQQLE---IDA--------HVGNVNDLAFSAP--CKQI 457 (1093)
Q Consensus 397 ~~~V~~v~~s~--dg~~las~~~d~----~i~iwd~~~~~~~~~~~~---~~~--------h~~~v~~~~~s~d--~~~l 457 (1093)
...|.+|++.| ++...|. ...+ .|... ...|+....... +.. +...|.++++.|. ..
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g-~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-- 129 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMA-ARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG-- 129 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEE-EEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--
T ss_pred CCceEEEEECCCCCCeEEEE-ecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--
Confidence 45799999998 4555544 4443 33332 233332221110 111 1135788999873 34
Q ss_pred EEEEEcCCCcEEEEECCCCceeEEeec-------------------CCCCeEEeeecccCCccEEEEEecCCeEEEEEcC
Q 001352 458 SVITCGDDKTIKVWDAVTGSRTYSFEG-------------------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 518 (1093)
Q Consensus 458 ~l~s~~~d~~i~vwd~~~~~~~~~~~~-------------------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~vwd~~ 518 (1093)
.+..++..+.|...+ ..|+.-..+.. ....+.+|.+.+...+ .++.+..++.|... .
T Consensus 130 ~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~-~l~vg~~~ggl~~s--~ 205 (394)
T 3b7f_A 130 TWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPK-HLYIGMSSGGVFES--T 205 (394)
T ss_dssp CEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTT-CEEEEEETBEEEEE--S
T ss_pred EEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCC-EEEEEECCCCEEEE--C
Confidence 244444455554443 33333222211 1234678887654333 34444444443332 2
Q ss_pred CCCceE-EecC--C-----------CCceEEEEEccC-CCEEEEEecCCCCceeEEEEeCCCCeeeeeeec-ccc-cCCC
Q 001352 519 SLGARV-DYDA--P-----------GLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-LQL-QHNS 581 (1093)
Q Consensus 519 ~~~~~~-~~~~--~-----------~~~v~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~-~~~~ 581 (1093)
...... .+.. . ...+.++++.|+ ...++++.. .+ |+..+- .++.-..+.. ... ....
T Consensus 206 DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~----~g-l~~s~D-~G~tW~~~~~~l~~~~~~~ 279 (394)
T 3b7f_A 206 DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH----CG-IYRMDR-REGVWKRIGDAMPREVGDI 279 (394)
T ss_dssp STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET----TE-EEEEET-TTTEEECGGGGSCTTTCSC
T ss_pred CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC----Ce-EEEeCC-CCCcceECCCCCCCCCccc
Confidence 222222 1111 0 124788999886 355555542 22 444432 2322222221 110 0023
Q ss_pred eEEEEEcCC-CCEEEEEeC-----------CCcEEEEECCC-CceEEEEec--CCCC----CCCceEEEecC-CCEEEEE
Q 001352 582 VSVVHFDTA-KDQILAAGD-----------DHVIKIWDMNK-VQLLTTIDA--GGGL----PENPRICFNKN-GTLLAVI 641 (1093)
Q Consensus 582 v~~v~~~~~-~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~--~~~~----~~v~~v~~s~~-~~~l~~~ 641 (1093)
+..+.++|. ...++++.. ++...+|.... |+.-..+.. .... .....++++|. ...|+++
T Consensus 280 ~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g 359 (394)
T 3b7f_A 280 GFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFG 359 (394)
T ss_dssp EEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEE
T ss_pred eEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEE
Confidence 567788763 344555432 33345555444 343333321 1100 01236888874 4556667
Q ss_pred ECCCeEEEEEcCCCceeeecccccccceeeee
Q 001352 642 ANENRIKILETPESNSVDAAGVLSDNLRKLSV 673 (1093)
Q Consensus 642 ~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~ 673 (1093)
+.++.|..- ...+.....+......+.++++
T Consensus 360 ~~~g~l~~S-~D~G~tW~~~~~~lp~~~~v~~ 390 (394)
T 3b7f_A 360 TTGGEIWAS-ADEGEHWQCIASHLPHIYAVQS 390 (394)
T ss_dssp CTTSCEEEE-SSTTSBCEEEECSCSCEEEEEE
T ss_pred eCCCeEEEE-CCCCCCceEcccCCCCeeEEEE
Confidence 655655432 2223333333333333444444
No 385
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=48.83 E-value=37 Score=35.01 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.3
Q ss_pred HHHHHHHhcCcCHHHHHHHhccC
Q 001352 38 MKFFEDMILDGKWEDVEQYLSSF 60 (1093)
Q Consensus 38 ~~~~~~~i~~G~w~~~~~~l~~~ 60 (1093)
+.+|++.|-+|++-+|.+.+..+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl 39 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI 39 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH
Confidence 68999999999999999987654
No 386
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=48.09 E-value=2.7e+02 Score=29.40 Aligned_cols=65 Identities=6% Similarity=-0.016 Sum_probs=38.7
Q ss_pred cCCCCEEEEEeCCCcEEEEECCC-------CceEEEEecCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001352 588 DTAKDQILAAGDDHVIKIWDMNK-------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 653 (1093)
Q Consensus 588 ~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 653 (1093)
-|+..++++.+.+|.|+--.+.. ++-+..+..... ..+..+........++..+..|.+.-+...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~ 75 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEE-DFIDQLWLVNTHDTLLTFTSSGKVFWLPVH 75 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCC-CCEEEEEEECTTCEEEEEETTSEEEEEEGG
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCC-CEEEEEEEecCCCEEEEEeCCCeEEEEEHH
Confidence 46778899999999998765432 122223332222 234455555556667777777877666543
No 387
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=46.81 E-value=41 Score=34.91 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=19.6
Q ss_pred HHHHHHHhcCcCH---HHHHHHhccC
Q 001352 38 MKFFEDMILDGKW---EDVEQYLSSF 60 (1093)
Q Consensus 38 ~~~~~~~i~~G~w---~~~~~~l~~~ 60 (1093)
+.+|++.|-+|+| -+|.+.+..+
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi 41 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV 41 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH
Confidence 6789999999999 8998887654
No 388
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=46.04 E-value=1.3e+02 Score=26.47 Aligned_cols=94 Identities=12% Similarity=0.163 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCCChh--H---HHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhhhhhccCCCHHHHHH
Q 001352 21 FTESAHMLERESRFYFD--M---KFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALN 95 (1093)
Q Consensus 21 ~~~s~~~L~~Esg~~~~--~---~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~ 95 (1093)
+.++...+++-.....+ + ..=+-....|+|++|+..+.+...+.++. ..+.+.+ =.=+...|++.+|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~--~~a~~~l----g~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD--PKAHRFL----GLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHH----HHHHHHcCchHHHHH
Confidence 45566666665555443 1 11123466799999999998753332222 1122222 122345789999999
Q ss_pred HHHhhccccCCCCHHHHHHHHHhhcc
Q 001352 96 ILKKDLKDFAPGNEELFKELAQLLTL 121 (1093)
Q Consensus 96 ~l~~~l~~~~~~~~~~~~~l~~l~~~ 121 (1093)
.+++-+. +.+.+++-+..|+.++..
T Consensus 87 ~~~~al~-~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVE-LNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 9998654 334567777888876653
No 389
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=43.65 E-value=93 Score=26.25 Aligned_cols=90 Identities=8% Similarity=0.032 Sum_probs=0.0
Q ss_pred CCCEEEE-EeCCeEEEEEcCCcceeeeeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceEEEeccccccCCC
Q 001352 948 DQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1026 (1093)
Q Consensus 948 dg~~l~~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~dg~~l~t~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 1026 (1093)
+|.+.+. ..||.+.+|+...+..+-.--......-..+.+..||.+++... ++.+ +|...+....
T Consensus 23 ~g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t~~~~------------ 88 (113)
T 3mez_B 23 TRDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD-RLNT-VFVSNTVGQE------------ 88 (113)
T ss_dssp ETTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TSCE-EEECSCCCSS------------
T ss_pred cCCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC-CCCE-EEECCCcCCC------------
Q ss_pred CCCCccceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCCcccCC
Q 001352 1027 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLP 1072 (1093)
Q Consensus 1027 ~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~~ 1072 (1093)
+.+.++-..||.+.+++ .+-|+.-|
T Consensus 89 -----------------~~~~~~L~~dGnlvly~----~~~W~s~~ 113 (113)
T 3mez_B 89 -----------------GDYVLILQINGQAVVYG----PAVWSTAA 113 (113)
T ss_dssp -----------------SCCEEEECTTSCEEEEC----SEEEESCC
T ss_pred -----------------CCEEEEEcCCceEEEec----CCEecCCC
No 390
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=42.18 E-value=24 Score=27.70 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhcChHHHHHHHHHhcCCC
Q 001352 8 LVFLILQFLNEEGFTESAHMLERESRFY 35 (1093)
Q Consensus 8 ~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1093)
+.-||-.||+=.||+-|+..++-|+|..
T Consensus 21 i~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 21 VASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 5668999999999999999999999985
No 391
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=42.07 E-value=73 Score=36.29 Aligned_cols=64 Identities=14% Similarity=0.252 Sum_probs=48.2
Q ss_pred ceEEEEEccCCCEEEEEecCC--------CCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEE
Q 001352 532 GCTRMAYSANGRRLFSCGTSK--------EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 597 (1093)
Q Consensus 532 ~v~~~~~s~d~~~l~~~~~~~--------~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~ 597 (1093)
..-.|+|+|.|++++.--.+. .+...+.+.+..+++..+.+.+.. ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEE
Confidence 356799999999666532211 134567888888999888888766 6789999999999888764
No 392
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=39.71 E-value=4.5e+02 Score=29.47 Aligned_cols=166 Identities=13% Similarity=0.133 Sum_probs=87.6
Q ss_pred ccccEEEEEeeCCCCcEEEEEEcCCCc----------------------------EEEEECCCCceeEEeecC--CCCe-
Q 001352 441 HVGNVNDLAFSAPCKQISVITCGDDKT----------------------------IKVWDAVTGSRTYSFEGH--GAPV- 489 (1093)
Q Consensus 441 h~~~v~~~~~s~d~~~l~l~s~~~d~~----------------------------i~vwd~~~~~~~~~~~~h--~~~v- 489 (1093)
|-..+....|..||+. -++....+|+ +.|+|-.+|+.+.++.-. .+.+
T Consensus 177 ~yt~~~V~DlDGDGka-EIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~ 255 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKA-EVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVS 255 (591)
T ss_dssp TSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGG
T ss_pred ccCceeEEEcCCCCcc-eEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCccc
Confidence 5666777788888876 4555544554 788998899888776432 1111
Q ss_pred --------------EEeeecccCCccEEEEEe---cCCeEEEEEcCCCCce--EEecCCC-----------CceEEEEEc
Q 001352 490 --------------YSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGAR--VDYDAPG-----------LGCTRMAYS 539 (1093)
Q Consensus 490 --------------~~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~--~~~~~~~-----------~~v~~~~~s 539 (1093)
..++.. +.+...++.+- ....|..||++..+.. ..+.... +......+.
T Consensus 256 ~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVD 334 (591)
T 2zux_A 256 DWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVD 334 (591)
T ss_dssp GGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCS
T ss_pred ccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCC
Confidence 122221 11222333332 1234777887665432 2332211 233333445
Q ss_pred cCCCEEEEEecCCCCceeEEEEeCCCCeeeeeee-cccccCCCeEEEEEcCCC--CEEEEEeCCC----cEEEEECCCCc
Q 001352 540 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAK--DQILAAGDDH----VIKIWDMNKVQ 612 (1093)
Q Consensus 540 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~v~~~~~~--~~l~~~~~dg----~i~iwd~~~~~ 612 (1093)
.||+-=+..+. .++| ..|+.+.... +| ...+....|.|+. ..++.+.+++ ...+.|..+|+
T Consensus 335 gDG~dEIv~Gs--------~~iD-~dG~~L~st~~gH---GDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~ 402 (591)
T 2zux_A 335 GDGKDEIIFGS--------MAVD-HDGKGMYSTGLGH---GDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGK 402 (591)
T ss_dssp SSSSCEEEETT--------EEEC-TTSCEEEECSCCC---CSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCC
T ss_pred CCCCceEEEee--------eEEC-CCCCEeeeCCCCC---CCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCc
Confidence 55543222111 1223 2343333332 33 3777777888874 4666665542 35568999999
Q ss_pred eEEEEecC
Q 001352 613 LLTTIDAG 620 (1093)
Q Consensus 613 ~~~~~~~~ 620 (1093)
.+......
T Consensus 403 vlw~~~~~ 410 (591)
T 2zux_A 403 ILWGVYAG 410 (591)
T ss_dssp EEEEECCS
T ss_pred EEEEcCCC
Confidence 98877644
No 393
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=39.35 E-value=5.3e+02 Score=30.27 Aligned_cols=432 Identities=9% Similarity=0.011 Sum_probs=0.0
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEEEecCC----CCCCCceEEEec-CCCEEEEEECC--------C
Q 001352 580 NSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGG----GLPENPRICFNK-NGTLLAVIANE--------N 645 (1093)
Q Consensus 580 ~~v~~v~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~v~~s~-~~~~l~~~~~d--------g 645 (1093)
+.|..++++|.. ..++++...+.|+.++-............. ....+.+++++| +...++++... .
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Q ss_pred eEEEEEcCCCceeeecccccc---------cceeeeecCCCceeeeeccCCceEecCCCCCCCccceeecccccceecce
Q 001352 646 RIKILETPESNSVDAAGVLSD---------NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 716 (1093)
Q Consensus 646 ~i~iw~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~ 716 (1093)
.-.......++.......... .+..+++.| .+...+..+...+ -.+|..
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p---------------------~~~~~v~~g~~~g-~gl~~S 160 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDP---------------------NDNRILYLGTRCG-NGLWRS 160 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECS---------------------SCTTCEEEECSTT-CCEEEE
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECC---------------------CCCCEEEEeeccC-CcEEEe
Q ss_pred eeccCccccccccCcc------------ccccceEEEEeecCCc-------eEEEeeccceeEEeeecCcccCcCccccc
Q 001352 717 LFARPSECQSLLLPSK------------VKANKISRLTYNNGGQ-------AIFALASNGVHLMWRWPRNDLTLSTEATT 777 (1093)
Q Consensus 717 ~~~~~~~~~~~~~~~~------------~~~~~i~~l~~s~~g~-------~l~~~~~dg~v~vw~~~~~~~~~~~~~~~ 777 (1093)
......-.....++.. .....+..+.++|... .+.++..++...+|.-...
T Consensus 161 ~DgG~tW~~~~~~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~Dg---------- 230 (737)
T 2cn3_A 161 TDYGVTWSKVESFPNPGTYIYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDG---------- 230 (737)
T ss_dssp SSTTSSCEECTTCCCCCCCBSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESST----------
T ss_pred CCCCcceecccCCCCCcccccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCC----------
Q ss_pred ccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeC--------CeEEEEEccCceeEEEECCCCCCe--
Q 001352 778 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--------GVISLYIVMTFKTILTIMPPSPTA-- 847 (1093)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i-- 847 (1093)
-.-|....+. ........+.++|++.++++..+ ..-.+|....+....+........
T Consensus 231 ---G~tW~~~~~~----------p~~~~~~~~~~~~~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~~~~~~~ 297 (737)
T 2cn3_A 231 ---GVTWKAVPGQ----------PKGLLPHHGVLASNGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITPIPYSSS 297 (737)
T ss_dssp ---TSCCEECTTC----------CCSSEEEEEEECTTSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCSSCTTST
T ss_pred ---CCceEECCCC----------CCcccceEEEECCCCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccCCCCCCc
Q ss_pred ------EEEEEcCCCCCEEEEEeCC----CeEEEEEcCCcceeeec----------------------------------
Q 001352 848 ------TSLAFNPHDNNVIAIGMDD----STILIYNARSSEVISKL---------------------------------- 883 (1093)
Q Consensus 848 ------~~l~~s~~d~~~lasg~~d----g~i~iwd~~~~~~~~~l---------------------------------- 883 (1093)
..++++|.+...|++++.+ ..-..-..+.|+--..+
T Consensus 298 ~~~~~~~~i~v~p~~~~~ly~~~~~~~~~~~~l~~S~DgG~tW~~~~~~~g~p~~~~~~~~d~~~~p~~~~~~~~~~~~~ 377 (737)
T 2cn3_A 298 DNRFCFAGLAVDRQNPDIIMVTSMNAWWPDEYIFRSTDGGATWKNIWEWGMYPERILHYEIDISAAPWLDWGTEKQLPEI 377 (737)
T ss_dssp TCCSEEEEEEECTTCTTCEEEEEECCCSSCCCEEEESSTTSSCEESEEECSTTCEEESEEEECTTSGGGGTTCCCCTTCC
T ss_pred ccccccccEEEcCCCCCEEEEEecccCCCCccEEEeCCCCccccchhhccCCCcccceeecCCCCCceeccCCccccccc
Q ss_pred -ccccCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC----CceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCC
Q 001352 884 -EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 958 (1093)
Q Consensus 884 -~~h~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~ 958 (1093)
..+.-.+..|++.|...--+..+.++.|..-.=.. ........+..--.... +..+.+.|.+..|+++...
T Consensus 378 ~~~~~~~~~~l~idp~~~~~~~~g~~~g~~~s~d~g~w~~~~~~~~~~~~~g~~~~~----~~~~~~~p~~~~l~~~~~d 453 (737)
T 2cn3_A 378 NPKLGWMIGDIEIDPFNSDRMMYVTGATIYGCDNLTDWDRGGKVKIEVKATGIEECA----VLDLVSPPEGAPLVSAVGD 453 (737)
T ss_dssp SSCSCSCCCCEEECTTCTTCEEEECSSCEEEESCGGGGGGTCCEEEEECCTTCBCCB----EEEEECCSSSCSEEEEETT
T ss_pred cccCCcccccEEECCCCCCcEEEeCCCeEEeecCCCccccCCceeEEEcCCCceeee----eeeEEcCCCCCeeEEEEec
Q ss_pred eEEEEEcCCcceeeeeecCCCCCEEEEEEccC--CCEEEEEeCCCc---EEEEEcCCCceEEE--eccccccCCCCCCCc
Q 001352 959 HLAIYEAEELTCLKQWFPISSVPISQATFSCD--CRMVFTSFVDGT---LSIHEASNLEVQCR--ILSTAYLRPTTSCLH 1031 (1093)
Q Consensus 959 ~i~vwd~~~~~~~~~~~~~h~~~v~~~~fs~d--g~~l~t~~~dg~---v~vwd~~~~~~~~~--~~~~~~~~~~~~~~~ 1031 (1093)
.-.++...-.+...............++|..+ ..+++++..|+. ..++..+.|..-.. ..+.......
T Consensus 454 ~g~~~~~d~~~~~~~~~~~~~~~~~~i~~ag~~~~~~v~vG~~dg~~~~~i~~S~DgG~tW~~~~~~p~~~~~~~----- 528 (737)
T 2cn3_A 454 LVGFVHDDLKVGPKKMHVPSYSSGTGIDYAELVPNFMALVAKADLYDVKKISFSYDGGRNWFQPPNEAPNSVGGG----- 528 (737)
T ss_dssp TBCCEESSTTSCCSSCSCTTCSEEEEEEEETTEEEEEEEEEECSSCCCCSEEEESSTTSSCBCCSCCCSCSSCCS-----
T ss_pred cCCeEEcccccCCccccCCccccccceeecccCCCeEEEEECcCCCCCceEEEeCCCCCCCcccccCCccccCCc-----
Q ss_pred cceeEEEeCCCCCCEEEEEeCCCcEEEEecCCCCCCcccCC
Q 001352 1032 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLP 1072 (1093)
Q Consensus 1032 v~~~~~~~~p~d~~~l~~~~~dg~v~~w~~~~~~~~~~~~~ 1072 (1093)
.+++++.+.+.+.+++.++ ++.-.+.+..|+..+
T Consensus 529 ----~i~~~~~~~~~~~a~~~~~---v~~S~D~G~tW~~~~ 562 (737)
T 2cn3_A 529 ----SVAVAADAKSVIWTPENAS---PAVTTDNGNSWKVCT 562 (737)
T ss_dssp ----EEEECTTSSCEEEECTTSC---CEEESSTTSSCEECB
T ss_pred ----eEEEEeCCCCEEEEeCCCe---EEEECCCCCCCccCC
No 394
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=39.03 E-value=3.3e+02 Score=27.80 Aligned_cols=192 Identities=12% Similarity=0.117 Sum_probs=93.2
Q ss_pred CCCCEEEEEEcCCEEEEEEccCCCcccc------eEEeccccccEEEEEeeCCCCcEEEEEEcCCCcEEEE---ECCC--
Q 001352 407 PDGSLLGVAYSKHIVQLYAYHGGSDARQ------QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW---DAVT-- 475 (1093)
Q Consensus 407 ~dg~~las~~~d~~i~iwd~~~~~~~~~------~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i~vw---d~~~-- 475 (1093)
|+..++++.+.+|.|+--.+..-+..+. -..+..+. .+..+....... .++..+..|.+.-. ++..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D-~l~~~~~~~~~~--~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEED-FIDRLLVANTHD--HILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------C-CEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCC-EEEEEEEECCCC--EEEEEECCCEEEEEEhhHCcCCC
Confidence 3556778888999887666543211110 00122222 333333333333 34555556664444 3322
Q ss_pred ----CceeE---EeecCCCCeEEeeecc-cCCccEEEEEecCCeEEEEEcCCCC-----ceE--EecCCCCceEEEEEcc
Q 001352 476 ----GSRTY---SFEGHGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLG-----ARV--DYDAPGLGCTRMAYSA 540 (1093)
Q Consensus 476 ----~~~~~---~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~-----~~~--~~~~~~~~v~~~~~s~ 540 (1093)
|..+. .+. ....|.++.... ..+..+++..+..|.++.-.+.... ... .+.. ...+..+....
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~-~d~lv~~~~~~ 155 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVD-GDELIGVDLTS 155 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECC-CCEEEEEEEeC
Confidence 22221 122 234455553321 1345689999999999998764221 111 1222 24444444444
Q ss_pred CCCEEEEEecCCCCceeEEEEeCCCCee-------eeeeecccccCCCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001352 541 NGRRLFSCGTSKEGESFLVEWNESEGAI-------KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 609 (1093)
Q Consensus 541 d~~~l~~~~~~~~~~~~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~dg~i~iwd~~ 609 (1093)
+...++..+. .+.+..++...-.. ++.+.-. ....|.++....++..++..+..|.++-.++.
T Consensus 156 ~~~~i~l~T~----~G~~irf~~~~v~~~gr~a~Gv~~i~L~--~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~ 225 (307)
T 1zi0_A 156 GEDEVMLFSA----EGKVVRFKESSVRAMGCNTTGVRGIRLG--EGDKVVSLIVPRGDGAILTATQNGYGKRTAVA 225 (307)
T ss_dssp TTCEEEEEET----TSEEEEEEGGGSCBCCTTCCCEECCCCC--TTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred CCCEEEEECC----CCcEEEEEHHHcCccCCCCCCeEeEEeC--CCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence 4444555543 45566665432111 1111111 13456666555556678888999998887764
No 395
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=38.95 E-value=3.4e+02 Score=27.95 Aligned_cols=152 Identities=9% Similarity=0.094 Sum_probs=78.1
Q ss_pred CceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCC-CCceeeccCCCCCCCCCeeEEEEc-cCCCEEEEEeCC
Q 001352 747 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH-GPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSASGG 824 (1093)
Q Consensus 747 g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~la~~~dg 824 (1093)
+.+++.++.+|.++...+..- .... +.-.....+.. ...+..+... .+...++...+|
T Consensus 106 ~~~ll~~T~~G~iKrt~l~e~-----------------~~~~r~~G~~ai~l~e---~d~lv~~~~~~~~~~i~l~T~~G 165 (323)
T 1wp5_A 106 NGYFLFVTRNGMVKKTELKHY-----------------KAQRYSKPLTGINLKN---DDQVVDVHLTDGMNELFLVTHNG 165 (323)
T ss_dssp SCEEEEEETTSEEEEEEGGGG-----------------CCSCCSSCEECSCCCT---TCCEEEEEEECSCSEEEEEETTS
T ss_pred CceEEEEeCCCeEEEeEHHHh-----------------hhccccCceEEEEeCC---CCEEEEEEEeCCCCEEEEEeCCC
Confidence 556888899999987654321 1111 11122222321 2344444443 344455555578
Q ss_pred eEEEEEccCcee-------EEEEC-CCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-------ceee---ecccc
Q 001352 825 VISLYIVMTFKT-------ILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVIS---KLEGH 886 (1093)
Q Consensus 825 ~i~iwd~~~~~~-------~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~-------~~~~---~l~~h 886 (1093)
.+..+....-.. ++-+. .....|.++...+++...|++.+..|..+..++..- +-+. .++..
T Consensus 166 ~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~ 245 (323)
T 1wp5_A 166 YALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKAN 245 (323)
T ss_dssp EEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSS
T ss_pred cEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCC
Confidence 887777653211 11111 123456666554413326788889998888777541 1111 12222
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001352 887 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 918 (1093)
Q Consensus 887 ~~~V~~l~~s~dg~~l~s~s~dg~i~iwd~~~ 918 (1093)
...+..+....++..++..+..|.+....++.
T Consensus 246 ~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 246 PHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred CceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 23455443334445566667777766666654
No 396
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=37.96 E-value=3.6e+02 Score=27.83 Aligned_cols=200 Identities=8% Similarity=0.073 Sum_probs=104.8
Q ss_pred CCCccceeecccccceecceeeccCccccccccCccccccceEEEEeecCCceEEEeeccceeEEeeecCcccCcCcccc
Q 001352 697 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT 776 (1093)
Q Consensus 697 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~ 776 (1093)
|+...+++.+.+|.|+--.+............+ ...+.+..+........++..+..|.+.-+.... .+.....
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~l---ke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~e---lp~~~r~ 76 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAM---KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHE---LPDIRWK 76 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCC---CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGG---SCBCCTT
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcccccc---CCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHH---CcCCCCC
Confidence 456667778888888765433111110101111 1344555666666667788888888765543321 0111100
Q ss_pred cccCCcccCCCCCCceee-ccCCCCCCCCCeeEE-EEcc--CCCEEEEEe-CCeEEEEEccCcee--------EEEECCC
Q 001352 777 TKVPPRLYQPRHGPQFMV-NDTTDSNSQEAVPCF-ALSK--NDAYLFSAS-GGVISLYIVMTFKT--------ILTIMPP 843 (1093)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~l-~~s~--dg~~la~~~-dg~i~iwd~~~~~~--------~~~~~~~ 843 (1093)
..|.++.. ..+ .....|..+ .+.. ++.+++..+ .|.++-..+..... ...+...
T Consensus 77 ----------a~G~~i~~~i~L---~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~ 143 (323)
T 1wp5_A 77 ----------DLGQHIANIIPI---DRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND 143 (323)
T ss_dssp ----------SCCEEGGGTSCC---CTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT
T ss_pred ----------CCCcChhhccCC---CCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC
Confidence 11111000 111 123345544 3332 255566665 69998888753222 1123322
Q ss_pred CCCeEEEEEcCCCCCEEEEEeCCCeEEEEEcCCcc---------eeeecccccCCeEEEEEeCCCC-EEEEEeCCCcEEE
Q 001352 844 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFV 913 (1093)
Q Consensus 844 ~~~i~~l~~s~~d~~~lasg~~dg~i~iwd~~~~~---------~~~~l~~h~~~V~~l~~s~dg~-~l~s~s~dg~i~i 913 (1093)
+.+..+.... +...|+..+.+|.+..++...-. ..-.+. ....|.++...+++. .+++.+..|..+.
T Consensus 144 -d~lv~~~~~~-~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr 220 (323)
T 1wp5_A 144 -DQVVDVHLTD-GMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKK 220 (323)
T ss_dssp -CCEEEEEEEC-SCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEE
T ss_pred -CEEEEEEEeC-CCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEE
Confidence 5555555554 45577788999998888875311 112222 234566665545555 7888888998888
Q ss_pred EeCCC
Q 001352 914 WDVDG 918 (1093)
Q Consensus 914 wd~~~ 918 (1093)
-+++.
T Consensus 221 ~~~~e 225 (323)
T 1wp5_A 221 MKLTE 225 (323)
T ss_dssp EEGGG
T ss_pred EEHHH
Confidence 77764
No 397
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=37.42 E-value=1.2e+02 Score=34.03 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=46.6
Q ss_pred ceEEEEEccCCCEEEEEecC--------CCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCCCCEEEEEe
Q 001352 532 GCTRMAYSANGRRLFSCGTS--------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 598 (1093)
Q Consensus 532 ~v~~~~~s~d~~~l~~~~~~--------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~ 598 (1093)
....|+|.++|.+.+..-.. +.+...|+.++..++++.+.+.+.. ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~--~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC--CccccCCEECCCCCEEEEEE
Confidence 45789999999877743211 1123478888988898877776543 35689999999999888753
No 398
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=35.85 E-value=1.1e+02 Score=27.04 Aligned_cols=51 Identities=16% Similarity=0.001 Sum_probs=23.3
Q ss_pred HhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhhhhhccCCCHHHHHHHHHhh
Q 001352 44 MILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKD 100 (1093)
Q Consensus 44 ~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~ 100 (1093)
....|+|++|+..+.....+..+. . .+.|.+ =.=++..|+..+|+..+++-
T Consensus 65 ~~~~g~~~~A~~~~~~al~l~p~~-~-~~~~~l----g~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 65 RQAMGQYDLAIHSYSYGAVMDIXE-P-RFPFHA----AECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC-T-HHHHHH----HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCC-c-hHHHHH----HHHHHHcCCHHHHHHHHHHH
Confidence 345567777766665532221111 0 111111 11123456666676666653
No 399
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=34.14 E-value=4.5 Score=33.80 Aligned_cols=37 Identities=8% Similarity=0.141 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccC
Q 001352 23 ESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1093)
Q Consensus 23 ~s~~~L~~Esg~~~~~~~~~~~i~~G~w~~~~~~l~~~ 60 (1093)
..+..+-+|||+++++..+-..|. |+|+++++.++++
T Consensus 36 a~~i~vi~~sGL~y~~~pmgT~IE-Ge~devm~vvk~~ 72 (106)
T 1vk8_A 36 DRAIEKISSWGMKYEVGPSNTTVE-GEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHHHTTCSCEEECSSCEEEE-ECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEeCCCccEEE-cCHHHHHHHHHHH
Confidence 344455568999998777766665 9999999998764
No 400
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=33.94 E-value=1.5e+02 Score=29.95 Aligned_cols=101 Identities=19% Similarity=0.225 Sum_probs=55.5
Q ss_pred HhhhhcChHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhhhhhccCC
Q 001352 14 QFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGH 88 (1093)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~ 88 (1093)
.++..--|.++...+++=.....+ ...-+-.+..|++++|+..+.++.....+. . ...-..-++++..+
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~----~--~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT----R--YQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH----H--HHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch----H--HHHHHHHHHHHhhc
Confidence 334444466666666654433332 222344567799999999988874333221 1 11222234455556
Q ss_pred CHHHHHHHHHhhccccCCCCHHHHHHHHHhhcc
Q 001352 89 DIAKALNILKKDLKDFAPGNEELFKELAQLLTL 121 (1093)
Q Consensus 89 ~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 121 (1093)
+..+|+..|++-+.-. +.+.+....|+.++..
T Consensus 200 ~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 200 ADTPEIQQLQQQVAEN-PEDAALATQLALQLHQ 231 (287)
T ss_dssp TSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHhcC-CccHHHHHHHHHHHHH
Confidence 6677888887755432 3456666667666553
No 401
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=33.39 E-value=24 Score=20.19 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHhhhhc
Q 001352 4 LNKDLVFLILQFLNEE 19 (1093)
Q Consensus 4 ~~~~~~~li~q~L~~~ 19 (1093)
+-+||++||-||-+..
T Consensus 3 fMkDvlql~qQy~qsh 18 (26)
T 1kdl_A 3 FMKDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578999999986653
No 402
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=32.16 E-value=1.7e+02 Score=24.29 Aligned_cols=88 Identities=8% Similarity=-0.048 Sum_probs=47.4
Q ss_pred HHHHHHhhhhcChHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhhhh
Q 001352 9 VFLILQFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFE 83 (1093)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lE 83 (1093)
..+...++...-|.++...+++-.....+ ...-.-....|+|++|+.++.......... ..+.+.+- .-
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~la----~~ 93 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRKA----AA 93 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH----HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHHH----HH
Confidence 33444444445577777777775555433 111223456788888888877642222111 11221111 11
Q ss_pred hccCCCHHHHHHHHHhhcc
Q 001352 84 ALDGHDIAKALNILKKDLK 102 (1093)
Q Consensus 84 ll~~~~~~~A~~~l~~~l~ 102 (1093)
+...|++.+|+..+++-+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 2456788888888887543
No 403
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=31.12 E-value=1.5e+02 Score=29.22 Aligned_cols=110 Identities=6% Similarity=0.040 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhh
Q 001352 6 KDLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ 79 (1093)
Q Consensus 6 ~~~~~li~q~L~~~g-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 79 (1093)
.|+.....+.+...| |.++...+++--....+ ...-.-....|++++|+..+......+.+.. .....+-.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK---AKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTT---CCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchh---HHHHHHHH
Confidence 444444555555555 77777777664433222 2233356678999999998877523222211 11111222
Q ss_pred hhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhh
Q 001352 80 NFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLL 119 (1093)
Q Consensus 80 ~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~ 119 (1093)
.-.-+...|++.+|+..+++-+.-. +.+...+..|+.+.
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 118 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYF 118 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 2222345678888888887754422 22444455555444
No 404
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=30.21 E-value=1.4e+02 Score=24.99 Aligned_cols=83 Identities=8% Similarity=0.055 Sum_probs=43.8
Q ss_pred HhhhhcChHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhhhhhccCC
Q 001352 14 QFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGH 88 (1093)
Q Consensus 14 q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~ 88 (1093)
.+++..-|.++...+++--.+..+ ...=.-....|+|++|+..+.+...+..+. ..+.+.+ =.=+...|
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l----g~~~~~~~ 86 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYIRK----ATAQIAVK 86 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHHHH----HHHHHHHh
Confidence 334444477777777664443332 111223455788888888877642322221 1122211 11123567
Q ss_pred CHHHHHHHHHhhcc
Q 001352 89 DIAKALNILKKDLK 102 (1093)
Q Consensus 89 ~~~~A~~~l~~~l~ 102 (1093)
++.+|+..+++-+.
T Consensus 87 ~~~~A~~~~~~al~ 100 (126)
T 3upv_A 87 EYASALETLDAART 100 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877443
No 405
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=30.21 E-value=68 Score=25.93 Aligned_cols=55 Identities=7% Similarity=-0.009 Sum_probs=26.6
Q ss_pred HhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhhhhhccC-CCHHHHHHHHHhhcc
Q 001352 44 MILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDG-HDIAKALNILKKDLK 102 (1093)
Q Consensus 44 ~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~-~~~~~A~~~l~~~l~ 102 (1093)
....|+|++|+..+.+............+. ...-.=++.. |+..+|+..++.-+.
T Consensus 50 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 50 LYNLERYEEAVDCYNYVINVIEDEYNKDVW----AAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSCCTTCHHHH----HHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHccCHHHHHHHHHHHHHhCcccchHHHH----HHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 345677777777776542222110011111 1111112456 777777777776443
No 406
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=29.40 E-value=2.4e+02 Score=23.25 Aligned_cols=81 Identities=15% Similarity=0.229 Sum_probs=0.0
Q ss_pred CceEEEeeccceeEEeeecCcccCcCcccccccCCcccCCCCCCceeeccCCCCCCCCCeeEEEEccCCCEEEEEeCCeE
Q 001352 747 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVI 826 (1093)
Q Consensus 747 g~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~la~~~dg~i 826 (1093)
|.+-+..-.||.+.+|+ ....+|...+.. .......+.+..||.+++...++.+
T Consensus 19 g~y~l~~q~DgNLvly~---------------~~~~vW~ant~~-----------~~~~~~~L~l~~dGnLvL~d~~~~~ 72 (105)
T 4h3o_A 19 EPYHFIMQDDCNLVLYD---------------HSTSTWASNTEI-----------GGKSGCSAVLQSDGNFVVYDSSGRS 72 (105)
T ss_dssp TTEEEEECTTSCEEEEE---------------TTEEEEECCCCC-----------TTCCSCEEEECTTSCEEEECTTCCE
T ss_pred CCEEEEECCCCeEEEEE---------------CCEEEEEecCCC-----------CCCccEEEEEeCCccEEEECCCcEE
Q ss_pred EEEEccCceeEEEECCCCCCeEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001352 827 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 873 (1093)
Q Consensus 827 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~i~iwd 873 (1093)
+|...+... .+.+.+.--.||.+.||+
T Consensus 73 -vWss~t~~~-------------------~~~~~l~L~ddGNlVly~ 99 (105)
T 4h3o_A 73 -LWASHSTRG-------------------SGNYILILQDDGNVIIYG 99 (105)
T ss_dssp -EEECCCCCC-------------------SSCEEEEECTTSCEEEEE
T ss_pred -EEEecCCCC-------------------CCCEEEEEeCCCeEEEEC
No 407
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=28.92 E-value=1.6e+02 Score=25.56 Aligned_cols=14 Identities=29% Similarity=0.131 Sum_probs=7.2
Q ss_pred cCcCHHHHHHHhcc
Q 001352 46 LDGKWEDVEQYLSS 59 (1093)
Q Consensus 46 ~~G~w~~~~~~l~~ 59 (1093)
..|++++|+..+..
T Consensus 64 ~~g~~~~A~~~~~~ 77 (142)
T 2xcb_A 64 SLGLYEQALQSYSY 77 (142)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHH
Confidence 34555555555444
No 408
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=28.82 E-value=2.7e+02 Score=28.01 Aligned_cols=107 Identities=8% Similarity=0.098 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhhhhcC-hHHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhh
Q 001352 5 NKDLVFLILQFLNEEG-FTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1093)
Q Consensus 5 ~~~~~~li~q~L~~~g-~~~s~~~L~~Esg~~~~--~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1093)
+.++..++.+.+...| |.++...|++ +-..+ ...-+-....|++++|+..+..+....++. ..+.+. ..+
T Consensus 100 ~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~----~~~~l~-~a~ 172 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA----TLTQLA-TAW 172 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH-HHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc----HHHHHH-HHH
Confidence 4455555556666666 8888888887 43344 233344567799999999988763332221 111121 112
Q ss_pred hhh-ccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhh
Q 001352 82 FEA-LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLL 119 (1093)
Q Consensus 82 lEl-l~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~ 119 (1093)
+.+ ...|++++|+.++++-+.. .+.++..+..+..+.
T Consensus 173 ~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~ 210 (291)
T 3mkr_A 173 VSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACH 210 (291)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHH
T ss_pred HHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHH
Confidence 222 3457788888888775543 334555555555443
No 409
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=28.14 E-value=65 Score=23.81 Aligned_cols=32 Identities=22% Similarity=0.121 Sum_probs=28.1
Q ss_pred chhHHHHHHHHHhhhhcChHHHHHHHHHhcCC
Q 001352 3 KLNKDLVFLILQFLNEEGFTESAHMLERESRF 34 (1093)
Q Consensus 3 ~~~~~~~~li~q~L~~~g~~~s~~~L~~Esg~ 34 (1093)
+-|+.+.|||+--|.--||.+.|..|-.+-+.
T Consensus 14 K~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~ 45 (66)
T 2xz2_A 14 KNREILYRLMISQLMYDGLEKFAMELSMLVKA 45 (66)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 34778899999999999999999999988775
No 410
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=27.87 E-value=34 Score=27.31 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.2
Q ss_pred CCchhHHHHHHHHHhhhhc
Q 001352 1 MSKLNKDLVFLILQFLNEE 19 (1093)
Q Consensus 1 ~~~~~~~~~~li~q~L~~~ 19 (1093)
|+..+++++..|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6677899999999999764
No 411
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=27.84 E-value=1.1e+02 Score=27.27 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhhcChHHHHHHHHHhcCCChh-H----HHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhh
Q 001352 7 DLVFLILQFLNEEGFTESAHMLERESRFYFD-M----KFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1093)
Q Consensus 7 ~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~-~----~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1093)
+|-.-|.++|.+-+.-+-+ ..+..+ . ..=......|++++|+..+.+...++++. ..+.+.+ =
T Consensus 10 ~~~~~l~~~~~~~~~l~~a------l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~--~~~~~~l----g 77 (151)
T 3gyz_A 10 SISTAVIDAINSGATLKDI------NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--VDYIMGL----A 77 (151)
T ss_dssp HHHHHHHHHHHTSCCTGGG------CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----H
T ss_pred HHHHHHHHHHHCCCCHHHH------hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHH----H
Confidence 4556666777766542222 223332 1 11123455688888888777653322221 1111111 1
Q ss_pred hhhccCCCHHHHHHHHHhh--cccc
Q 001352 82 FEALDGHDIAKALNILKKD--LKDF 104 (1093)
Q Consensus 82 lEll~~~~~~~A~~~l~~~--l~~~ 104 (1093)
.=+...|++.+|+..+++- +.|-
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCC
Confidence 1224567777787777774 4444
No 412
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=27.73 E-value=2.3e+02 Score=22.59 Aligned_cols=101 Identities=10% Similarity=-0.020 Sum_probs=52.1
Q ss_pred HHHHHHhhhhcChHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhhhh
Q 001352 9 VFLILQFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFE 83 (1093)
Q Consensus 9 ~~li~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lE 83 (1093)
..+...++...-|.++...+++=-....+ ...-.-....|+|++|+..+.......... ..+.+.+- .=
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~a----~~ 81 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYSRKA----AA 81 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHH----HH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--HHHHHHHH----HH
Confidence 34444555555577777777664333222 111223455789999998887652222111 11121111 11
Q ss_pred hccCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001352 84 ALDGHDIAKALNILKKDLKDFAPGNEELFKELA 116 (1093)
Q Consensus 84 ll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~ 116 (1093)
+...|++.+|+..+++-+.- .+.++.....+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH-EANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT-CTTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHc-CCCCHHHHHHHH
Confidence 24578888999888875442 223444444443
No 413
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=26.69 E-value=1.2e+02 Score=27.05 Aligned_cols=90 Identities=12% Similarity=0.050 Sum_probs=48.4
Q ss_pred HHHHHHHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhh
Q 001352 7 DLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1093)
Q Consensus 7 ~~~~li~q~L~~~g-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (1093)
+....+...+...| |.++...+++=-.+..+ ...=.-....|+|++|+..+.+...+..+. ..+.+.+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l---- 85 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWSRL---- 85 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHH----
Confidence 34444444444444 78887777765444332 122233556789999988887753332221 1122211
Q ss_pred hhhhccCCCHHHHHHHHHhhcc
Q 001352 81 FFEALDGHDIAKALNILKKDLK 102 (1093)
Q Consensus 81 ~lEll~~~~~~~A~~~l~~~l~ 102 (1093)
=.=+...|++.+|+..+++-+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 1112456888888888877443
No 414
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.14 E-value=92 Score=28.04 Aligned_cols=20 Identities=35% Similarity=0.255 Sum_probs=15.3
Q ss_pred hhhhhccCCCHHHHHHHHHh
Q 001352 80 NFFEALDGHDIAKALNILKK 99 (1093)
Q Consensus 80 ~~lEll~~~~~~~A~~~l~~ 99 (1093)
..-|++..++..+|.+++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~E 34 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKE 34 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 44566777888888888887
No 415
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=26.09 E-value=52 Score=25.46 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=26.9
Q ss_pred CchhHHHHHHHHHhhhhcCh-HHHHHHHHHhcCCChh
Q 001352 2 SKLNKDLVFLILQFLNEEGF-TESAHMLERESRFYFD 37 (1093)
Q Consensus 2 ~~~~~~~~~li~q~L~~~g~-~~s~~~L~~Esg~~~~ 37 (1093)
+.....|...|+..|.+.|| ..+...+.++-|++.+
T Consensus 27 ~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~ 63 (76)
T 2k9l_A 27 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE 63 (76)
T ss_dssp CTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH
Confidence 34457789999999999997 4566667676676654
No 416
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=25.68 E-value=7.6e+02 Score=27.82 Aligned_cols=246 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred cCCCceE------EEEEccCCc-----EEEEecCCCceeEEeeeeeeecccccceeeeeeecCCCCCeEEEEECCCCCEE
Q 001352 344 HPVQHTL------LLVGTNVGD-----TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 412 (1093)
Q Consensus 344 spdg~~l------lasg~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s~dg~~l 412 (1093)
.|+|+.+ +++|..||. |..|+..+.+... ..+..+.+.-.+|..+|++|
T Consensus 108 ~p~g~t~~y~and~sVgDLDGDG~~EIVv~~d~~n~~d~s--------------------~~g~tg~~~l~aY~ldG~~L 167 (620)
T 2zuy_A 108 TPDGKPYTYSANDASVGDIDGDGEYEMILKWDPSNSKDNA--------------------HDGYTGEVLIDAYKLDGTFL 167 (620)
T ss_dssp CTTSCEECEEEEEEEEECSSSSSSCEEEEEEEETTCCCTT--------------------SCCCCCCCEEEEECTTSCEE
T ss_pred CCCCcCcceecCCCeEEecCCCCCeEEEEEECCCcccccc--------------------ccccCCCcEEEEEECCCCEE
Q ss_pred EEEEcCCEEEEEEccCCCcccceEEeccccccEEEEEeeCCCCcEEEEEEcCCCcE------------------------
Q 001352 413 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI------------------------ 468 (1093)
Q Consensus 413 as~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s~d~~~l~l~s~~~d~~i------------------------ 468 (1093)
|.+..+..++ ...|-..+....|..||+. -++....+|++
T Consensus 168 -----------W~idlg~Ni~----aGahyt~~~V~DlDGDGka-EIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G 231 (620)
T 2zuy_A 168 -----------WRINLGRNIR----AGAHYTQFMVYDLDGDGKA-EIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSG 231 (620)
T ss_dssp -----------EEEECCTTSC----CSTTSCCCEEECSSSSSSC-EEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSS
T ss_pred -----------EEEcCCCCcc----cccccCceeEEEcCCCCcc-eEEEEccCCcccCcceeecccccccccccceEecC
Q ss_pred ----EEEECCCCceeEEeecCC----------------CCeEEeeecccCCccEEEEEe---cCCeEEEEEcCCCCceEE
Q 001352 469 ----KVWDAVTGSRTYSFEGHG----------------APVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARVD 525 (1093)
Q Consensus 469 ----~vwd~~~~~~~~~~~~h~----------------~~v~~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~ 525 (1093)
.|+|-.+|+.+.++.-.. ..........+.+...++.+- ....|..||++..+....
T Consensus 232 ~eyL~vfdG~TG~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~ 311 (620)
T 2zuy_A 232 PEYLTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKR 311 (620)
T ss_dssp CCEEEEEETTTCCEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEE
T ss_pred CeEEEEEcCCCcceeeecccCCCcCccccccccccccccccceeEEecCCCCceEEEecCcccceeEEEEEccCCceeee
Q ss_pred ecCCC-------------CceEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeeeeeecccccCCCeEEEEEcCC--
Q 001352 526 YDAPG-------------LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-- 590 (1093)
Q Consensus 526 ~~~~~-------------~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~v~~~~~-- 590 (1093)
..... +......+..||+.=+..+. .++|-...-+...-.+|. ..+....|.|+
T Consensus 312 W~~ds~~~~~~~~~gqg~H~~svaDVDGDG~dEIv~Gs--------~~iD~dG~~L~st~~gHG---Da~hv~d~dP~rp 380 (620)
T 2zuy_A 312 WVFDSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGA--------MAVDHDGTGLYSTGLGHG---DAMHVGDLDPSRK 380 (620)
T ss_dssp EEEETTSTTCGGGTTCCCSSCEEECCSSSSSCEEEETT--------EEECTTSSEEEECSCCCC---SCEEEECSCTTSS
T ss_pred eEecCCCCcccccccccCcCceEEecCCCCceeEEEee--------eEECCCCCEEeecCCCCC---ceeEEEecCCCCC
Q ss_pred CCEEEEEeCC----CcEEEEECCCCceEEEEecCCCCCCCceEEEecCCC
Q 001352 591 KDQILAAGDD----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 636 (1093)
Q Consensus 591 ~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 636 (1093)
+-.++.+.++ ....+.|..+|+.+................|.|+..
T Consensus 381 Glev~~~~E~~~~~~G~~~~DA~tG~vlw~~~~~~D~Gr~~~~Didp~~p 430 (620)
T 2zuy_A 381 GLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDPSYK 430 (620)
T ss_dssp SCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCEEEEECCCTTSS
T ss_pred CCEEEEEecCCCCCCceEEEECCCCcEEEEecCcccCCceEEEecCCCCC
No 417
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.63 E-value=1e+02 Score=26.87 Aligned_cols=20 Identities=35% Similarity=0.255 Sum_probs=15.1
Q ss_pred hhhhhccCCCHHHHHHHHHh
Q 001352 80 NFFEALDGHDIAKALNILKK 99 (1093)
Q Consensus 80 ~~lEll~~~~~~~A~~~l~~ 99 (1093)
..-|++..++..+|.+++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~e 32 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKE 32 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHH
Confidence 34566777888888888887
No 418
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=24.66 E-value=1.9e+02 Score=23.81 Aligned_cols=94 Identities=6% Similarity=-0.006 Sum_probs=48.6
Q ss_pred HHHHHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCcc-ccchhhhHHHhhhh
Q 001352 9 VFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNR-YSTKIYFEIRKQNF 81 (1093)
Q Consensus 9 ~~li~q~L~~~g-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~-~~~~~~~~i~~~~~ 81 (1093)
...+.+.+...| |.++...+++=.....+ ...-.-....|+|++|+.++.......... ........++-..-
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 333444444444 77777777654333222 122223456799999999987652221110 00000011222222
Q ss_pred hhhccCCCHHHHHHHHHhhcc
Q 001352 82 FEALDGHDIAKALNILKKDLK 102 (1093)
Q Consensus 82 lEll~~~~~~~A~~~l~~~l~ 102 (1093)
.-+...|++.+|+..+++-+.
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 223567899999999987554
No 419
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=24.44 E-value=1.6e+02 Score=24.89 Aligned_cols=90 Identities=12% Similarity=-0.076 Sum_probs=48.7
Q ss_pred HHHHHHHHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhh
Q 001352 6 KDLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ 79 (1093)
Q Consensus 6 ~~~~~li~q~L~~~g-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~ 79 (1093)
.+....+...+...| |.++...+++=-.+..+ ...=.-....|+|++|+..+.....+.... ..+.+.+-
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~-- 84 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFFLG-- 84 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH--
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh--HHHHHHHH--
Confidence 344444444444444 88887777664433332 122233456799999999887753322221 11222211
Q ss_pred hhhhhccCCCHHHHHHHHHhhc
Q 001352 80 NFFEALDGHDIAKALNILKKDL 101 (1093)
Q Consensus 80 ~~lEll~~~~~~~A~~~l~~~l 101 (1093)
.=++..|++.+|+..+++-+
T Consensus 85 --~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 --QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp --HHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHHhhHHHHHHHHHHHH
Confidence 11245688889988888743
No 420
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=23.03 E-value=2.9e+02 Score=22.48 Aligned_cols=89 Identities=12% Similarity=0.018 Sum_probs=44.5
Q ss_pred HHHHHHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhh
Q 001352 8 LVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1093)
Q Consensus 8 ~~~li~q~L~~~g-~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1093)
....+...+...| |.++...+++=.....+ ...-.-....|+|++|+..+.......... ..+.+.+-
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~---- 87 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--SKAYGRMG---- 87 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH----
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--HHHHHHHH----
Confidence 3344444444444 66666666553322221 122233456788888888877642221111 11221111
Q ss_pred hhhccCCCHHHHHHHHHhhcc
Q 001352 82 FEALDGHDIAKALNILKKDLK 102 (1093)
Q Consensus 82 lEll~~~~~~~A~~~l~~~l~ 102 (1093)
.=+...+++.+|+..+++-+.
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 112356788888888877543
No 421
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=22.85 E-value=61 Score=31.74 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhhcChHHHHHHHHHhcCCChhHHHHHHHhcCcC
Q 001352 7 DLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGK 49 (1093)
Q Consensus 7 ~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~~~~~~~~i~~G~ 49 (1093)
-+|+-+++||++.|+. +=|-+-+|-.-++..|++.+..|.
T Consensus 39 ~iv~~~i~~i~~~gl~---eGIfR~~G~~~~i~~L~~~~~~~~ 78 (229)
T 3iug_A 39 QVLQSCTAFIERYGIV---DGIYRLSGVASNIQRLRHEFDSEH 78 (229)
T ss_dssp HHHHHHHHHHHHHCCS---TTTTTSCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCC---CCCeecCCcHHHHHHHHHHHhcCC
Confidence 3677888999999862 333344444445888998887763
No 422
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=22.24 E-value=4.4e+02 Score=25.42 Aligned_cols=53 Identities=17% Similarity=0.352 Sum_probs=26.0
Q ss_pred HhcCcCHHHHHHHhccCCCcCCccccchhhhHHHhhhhhhhccCCCHHHHHHHHHhhcc
Q 001352 44 MILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLK 102 (1093)
Q Consensus 44 ~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lEll~~~~~~~A~~~l~~~l~ 102 (1093)
....|+|++|+..+.+....... ...+.+.+-...|.+. ++.+|+..+++-+.
T Consensus 118 ~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~----~~~~A~~~~~~a~~ 170 (272)
T 3u4t_A 118 FYNKGNFPLAIQYMEKQIRPTTT--DPKVFYELGQAYYYNK----EYVKADSSFVKVLE 170 (272)
T ss_dssp HHHTTCHHHHHHHHGGGCCSSCC--CHHHHHHHHHHHHHTT----CHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHhhcCCC--cHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34567777777776664222211 1123333332333322 67777777766443
No 423
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=22.16 E-value=3.3e+02 Score=22.61 Aligned_cols=79 Identities=9% Similarity=0.121 Sum_probs=39.6
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCcccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcce
Q 001352 891 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 970 (1093)
Q Consensus 891 ~~l~~s~dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~d~~i~vwd~~~~~~ 970 (1093)
..+.+..||++++... ++ +|...+.. .+ .-..+.+..+|.+++...++...+|...+.
T Consensus 22 ~~L~~q~dGnLvl~~~-~~---vW~snt~~----------~~------~~~~l~l~~dGNLVl~~~~~~~~vW~S~t~-- 79 (111)
T 3mez_A 22 AAFVMQGDCNLVLYNE-AG---GFQSNTHG----------RG------VDCTLRLNNRGQLEIHSANSNTPVWVYPRS-- 79 (111)
T ss_dssp EEEEECTTSCEEEECS-SC---CEECCCTT----------SC------SSCEEEECTTSCEEEECSSCSSCSEEESSS--
T ss_pred EEEEEccCCeEEEECC-CC---EEECCccc----------CC------cCEEEEEcCCCcEEEEeCCCCEEEEEeccc--
Confidence 4466666776666422 22 77655411 00 123567788888776654444456654321
Q ss_pred eeeeecCCCCCEEEEEEccCCCEEEE
Q 001352 971 LKQWFPISSVPISQATFSCDCRMVFT 996 (1093)
Q Consensus 971 ~~~~~~~h~~~v~~~~fs~dg~~l~t 996 (1093)
.........+.+-+||.+++-
T Consensus 80 -----~~~~~~~~~l~Lq~dGNlvly 100 (111)
T 3mez_A 80 -----VNTVRGNYAATLGPDQHVTIY 100 (111)
T ss_dssp -----CCCCSSCCEEEECTTSCEEEE
T ss_pred -----cCCCCcCEEEEECCCCeEEEe
Confidence 000112234556666666554
No 424
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=21.81 E-value=60 Score=25.56 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhhhcChHHHHHHHHHhcCCChh
Q 001352 6 KDLVFLILQFLNEEGFTESAHMLERESRFYFD 37 (1093)
Q Consensus 6 ~~~~~li~q~L~~~g~~~s~~~L~~Esg~~~~ 37 (1093)
.++.+=|+++|++.| .++..|-++-|++-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 357778889999999 888999999999775
No 425
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=21.78 E-value=2.4e+02 Score=25.50 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=22.4
Q ss_pred HHHhhhhcC-hHHHHHHHHHhcCCChh-H----HHHHHHhcCcCHHHHHHHhccC
Q 001352 12 ILQFLNEEG-FTESAHMLERESRFYFD-M----KFFEDMILDGKWEDVEQYLSSF 60 (1093)
Q Consensus 12 i~q~L~~~g-~~~s~~~L~~Esg~~~~-~----~~~~~~i~~G~w~~~~~~l~~~ 60 (1093)
+...+.+.| |.+|...+++=-.+..+ . ..=.-....|+|++|+..+...
T Consensus 11 lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 11 IGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444444 66666555554333332 1 1111233456666666665543
No 426
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.64 E-value=97 Score=22.06 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=20.0
Q ss_pred HHhhhhcChH--H-HHHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhcc
Q 001352 13 LQFLNEEGFT--E-SAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSS 59 (1093)
Q Consensus 13 ~q~L~~~g~~--~-s~~~L~~Esg~~~~~~~~~~~i~~G~w~~~~~~l~~ 59 (1093)
++-|.++||. + ...+|.. .+||-+.|+++|..
T Consensus 13 l~~L~~MGF~d~~~n~~AL~~---------------~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 13 LEQLRSMGFLNREANLQALIA---------------TGGDVDAAVEKLRQ 47 (54)
T ss_dssp HHHHHHHTCCCHHHHHHHHHH---------------HTSCHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHH---------------cCCCHHHHHHHHHh
Confidence 5778888882 2 2566654 35666667666543
No 427
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=21.10 E-value=4e+02 Score=31.29 Aligned_cols=111 Identities=12% Similarity=0.160 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHhhhhcC-hHHHHHHHHHhcCCChh----HHHH-HHHhcCcCHHHHHHHhccCCCcCCccccchhhhHHH
Q 001352 4 LNKDLVFLILQFLNEEG-FTESAHMLERESRFYFD----MKFF-EDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIR 77 (1093)
Q Consensus 4 ~~~~~~~li~q~L~~~g-~~~s~~~L~~Esg~~~~----~~~~-~~~i~~G~w~~~~~~l~~~~~~~~~~~~~~~~~~i~ 77 (1093)
-..|....+...+.++| |.+|...+++=-.+..+ ...| .-....|++++|+..+++...+..+. ..+.+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~--~~a~~n-- 82 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSN-- 82 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH--
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHH--
Confidence 34567777788888888 88888777765444443 1111 22445799999999987742222221 112221
Q ss_pred hhhhhhhccCCCHHHHHHHHHhhccccCCCCHHHHHHHHHhhcc
Q 001352 78 KQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 121 (1093)
Q Consensus 78 ~~~~lEll~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 121 (1093)
.=.=+.+.|++++|+..+++-+. +.+.+.+-+..|..++..
T Consensus 83 --Lg~~l~~~g~~~~A~~~~~kAl~-l~P~~~~a~~~Lg~~~~~ 123 (723)
T 4gyw_A 83 --MGNTLKEMQDVQGALQCYTRAIQ-INPAFADAHSNLASIHKD 123 (723)
T ss_dssp --HHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 11223567899999999998654 233466667777766543
No 428
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=20.97 E-value=10 Score=31.61 Aligned_cols=35 Identities=11% Similarity=0.219 Sum_probs=26.5
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccC
Q 001352 25 AHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1093)
Q Consensus 25 ~~~L~~Esg~~~~~~~~~~~i~~G~w~~~~~~l~~~ 60 (1093)
+..+-+|||+++++..+-..|- |+|+++++.++++
T Consensus 25 ~i~vl~~sGl~y~~~pmgT~IE-Ge~devm~vv~~~ 59 (104)
T 2ibo_A 25 VIAYLQTQEVTMVVTPFETVLE-GEFDELMRILKEA 59 (104)
T ss_dssp HHHHHHHSSSEEEECSSCEEEE-EEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEecCCccEEE-cCHHHHHHHHHHH
Confidence 3444458999998777666665 9999999998764
No 429
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=20.39 E-value=50 Score=23.31 Aligned_cols=15 Identities=40% Similarity=0.840 Sum_probs=12.3
Q ss_pred hHHHHHHHHHhhhhc
Q 001352 5 NKDLVFLILQFLNEE 19 (1093)
Q Consensus 5 ~~~~~~li~q~L~~~ 19 (1093)
++++++.|+|||+..
T Consensus 2 ~K~la~sIi~FL~~~ 16 (52)
T 4gof_A 2 KKRLAYAIIQFLHDQ 16 (52)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHh
Confidence 567999999999763
No 430
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=20.36 E-value=1.8e+02 Score=24.72 Aligned_cols=101 Identities=13% Similarity=0.217 Sum_probs=50.6
Q ss_pred HhhhhcC-hHHHHHHHHHhcCCChh-HHHH----HHHhcCcCHHHHHHHhccCCCcCCccccc-hhhhHHHhhhhhhhcc
Q 001352 14 QFLNEEG-FTESAHMLERESRFYFD-MKFF----EDMILDGKWEDVEQYLSSFTKVDDNRYST-KIYFEIRKQNFFEALD 86 (1093)
Q Consensus 14 q~L~~~g-~~~s~~~L~~Esg~~~~-~~~~----~~~i~~G~w~~~~~~l~~~~~~~~~~~~~-~~~~~i~~~~~lEll~ 86 (1093)
..+...| |.+|...+++=-.+..+ ...+ .-....|+|++|+..+.+...+..+.... ..+-.++-..=.-+..
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~ 95 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK 95 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH
Confidence 3333444 88888777764444333 1111 22456799999998877642211111000 0000111111111245
Q ss_pred CCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001352 87 GHDIAKALNILKKDLKDFAPGNEELFKELA 116 (1093)
Q Consensus 87 ~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~ 116 (1093)
.+++.+|+..+++-|.-. .+++....|.
T Consensus 96 ~~~~~~A~~~~~kal~~~--~~~~~~~~l~ 123 (127)
T 4gcn_A 96 QNDLSLAVQWFHRSLSEF--RDPELVKKVK 123 (127)
T ss_dssp TTCHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC--cCHHHHHHHH
Confidence 788999999988766522 2455545444
No 431
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=20.35 E-value=11 Score=31.56 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccC
Q 001352 21 FTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1093)
Q Consensus 21 ~~~s~~~L~~Esg~~~~~~~~~~~i~~G~w~~~~~~l~~~ 60 (1093)
|-..+..+-+|||+++++..+-..|- |+|+++++.++.+
T Consensus 25 ~Va~~i~~i~~sGl~y~~~pm~T~IE-Ge~devm~vv~~~ 63 (104)
T 1lxj_A 25 FVALIEKKIRESPLKSTLHSAGTTIE-GPWDDVMGLIGEI 63 (104)
T ss_dssp HHHHHHHHHHTSSSEEEEETTEEEEE-EEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEeCCCccEEE-cCHHHHHHHHHHH
Confidence 33445555668999998766666664 9999999997754
No 432
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=20.26 E-value=4.4e+02 Score=25.05 Aligned_cols=15 Identities=0% Similarity=-0.194 Sum_probs=8.3
Q ss_pred hcCcCHHHHHHHhcc
Q 001352 45 ILDGKWEDVEQYLSS 59 (1093)
Q Consensus 45 i~~G~w~~~~~~l~~ 59 (1093)
...|+|++|+.++..
T Consensus 82 ~~~~~~~~A~~~~~~ 96 (252)
T 2ho1_A 82 QTEMEPKLADEEYRK 96 (252)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 445566666655554
No 433
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=20.16 E-value=53 Score=32.74 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=41.4
Q ss_pred HHHhhhhcChHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccCCCcC
Q 001352 12 ILQFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVD 64 (1093)
Q Consensus 12 i~q~L~~~g~~~s~~~L~~Esg~~~~-----~~~~~~~i~~G~w~~~~~~l~~~~~~~ 64 (1093)
+.+.|++--+.++...++++-.-.+. ...|.=..+.|+|+.|++.|+.+..++
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 45667888899999999999876553 566666889999999999988764443
No 434
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=20.10 E-value=13 Score=31.38 Aligned_cols=36 Identities=11% Similarity=0.156 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccC
Q 001352 24 SAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1093)
Q Consensus 24 s~~~L~~Esg~~~~~~~~~~~i~~G~w~~~~~~l~~~ 60 (1093)
.+..+-+|||+++++.-+-..|- |+|+++++.++.+
T Consensus 29 ~~i~vl~~sGl~y~~~pmgT~IE-Ge~devm~vv~~~ 64 (109)
T 1yqh_A 29 KAIEVVQQSGVRYEVGAMETTLE-GELDVLLDVVKRA 64 (109)
T ss_dssp HHHHHHHHSCSEEEECSSCEEEE-ECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEecCCccEEE-cCHHHHHHHHHHH
Confidence 34444458999998766666664 9999999998764
Done!