BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001353
         (1093 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255557437|ref|XP_002519749.1| phytochrome B, putative [Ricinus communis]
 gi|223541166|gb|EEF42722.1| phytochrome B, putative [Ricinus communis]
          Length = 1131

 Score = 1692 bits (4382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 812/1127 (72%), Positives = 940/1127 (83%), Gaps = 45/1127 (3%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPV---NKGKTIIDHYNADAGLLAEFEQSVA 57
            MG Q  RE          TT   S+ + MKP    ++    I  YNADAGLLAEFEQS  
Sbjct: 1    MGFQNARERGT-------TTLSSSAASSMKPFATNSENTATIAQYNADAGLLAEFEQSGV 53

Query: 58   SGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCL 117
            SGKSFNYSRSV+S P  VPEEQITAYLS+IQRGGLIQPFGCM+A+EEPTFRII YSENC 
Sbjct: 54   SGKSFNYSRSVLSAPHNVPEEQITAYLSRIQRGGLIQPFGCMVAIEEPTFRIISYSENCF 113

Query: 118  EMLDLRSRS--EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSI 175
             +L L + S  E  ++ GLIGID R LFTP SGASL+KAAASREIS+LNPI V+S  R+ 
Sbjct: 114  HLLGLSASSVLESNQVKGLIGIDVRALFTPQSGASLSKAAASREISMLNPIWVYS--RTS 171

Query: 176  EKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLC 235
            +KPFYAILHRIDVGIVIDLEP++SGDP LSLAGAVQSQKLAV AISRLQ+LPGGDIG+LC
Sbjct: 172  QKPFYAILHRIDVGIVIDLEPARSGDPVLSLAGAVQSQKLAVRAISRLQSLPGGDIGMLC 231

Query: 236  DTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFK 295
            DTVVEDVQKLTGYDRVM+Y FHDDDHGEV+SEIRRSDLEPYLG+H+PA DIPQAARFLFK
Sbjct: 232  DTVVEDVQKLTGYDRVMVYKFHDDDHGEVLSEIRRSDLEPYLGLHYPATDIPQAARFLFK 291

Query: 296  QNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVII 355
            QNRVRMICDCHA PV VIQS+ELK PLCLVNSTLRSPHGCH QYM NMGSIASLVMAV+I
Sbjct: 292  QNRVRMICDCHANPVRVIQSEELKHPLCLVNSTLRSPHGCHTQYMANMGSIASLVMAVVI 351

Query: 356  NSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQ 415
            N  DS KLWGLVVCHHTSPRY+PFPLRYACEFL+QAF LQLYMELQ+A +L EK IL+TQ
Sbjct: 352  NGNDSTKLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLAAKLVEKKILQTQ 411

Query: 416  VLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLN 475
             LLCDMLLRDAPF IVTQSPSIMDLVKCDGAALYY G+CWL+G+TPTESQ+KDIA WLLN
Sbjct: 412  TLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALYYRGKCWLLGITPTESQVKDIADWLLN 471

Query: 476  NHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKH 535
            NHGD TGL+TDSLA+AGYPGA LLG AVCGMATARITS+DFLFWFRSHTAKE+KWGGAKH
Sbjct: 472  NHGDSTGLTTDSLADAGYPGALLLGDAVCGMATARITSRDFLFWFRSHTAKEIKWGGAKH 531

Query: 536  HPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK 595
            HPE KD+G +MHPRSSF AFLEVVK+RS PWEVSEINAIHSLQ++MRDSFQ+M E++ SK
Sbjct: 532  HPEDKDDGQRMHPRSSFNAFLEVVKSRSMPWEVSEINAIHSLQLIMRDSFQDM-EDSASK 590

Query: 596  VQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPA 655
               N QQ  + +QG+DELSSVACEMVRLIETATAPIFGVDS+G++NGWNAK+AELTGL A
Sbjct: 591  AMVNAQQTDTDVQGIDELSSVACEMVRLIETATAPIFGVDSAGSVNGWNAKIAELTGLQA 650

Query: 656  SEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNAC 715
            SEAMGKSL+ EVVH++S   VE+L+CRAL GEEDKNVELKLRKF L +Q+S V+++ NAC
Sbjct: 651  SEAMGKSLVREVVHKDSYEFVESLLCRALQGEEDKNVELKLRKFGLHQQNSAVFVVANAC 710

Query: 716  TSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCS 775
            TSRDY NNV GVCFVGQD+T EK++MDKF+RLQGDY+ II+S+NPLIPPIFASDENACC 
Sbjct: 711  TSRDYANNVIGVCFVGQDVTSEKIVMDKFLRLQGDYKVIIESLNPLIPPIFASDENACCC 770

Query: 776  EWNAAMEKVTGWMRHEVI------------------------------GITGQGTENFPF 805
            EWNAAME++TG  R EVI                              G++ Q T+ FPF
Sbjct: 771  EWNAAMERLTGRTRQEVIGKMLPGEIFGGLCRLKDQDTLTKFMILLYRGLSDQDTDKFPF 830

Query: 806  GFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKE 865
            GFFNRQG+FVEV LTA++RTDA+GK IGCFCF+Q++ PDLQ  L+    ED +   K+K+
Sbjct: 831  GFFNRQGKFVEVFLTANKRTDADGKTIGCFCFLQVIGPDLQQTLDEHKQEDQESLLKLKQ 890

Query: 866  LAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEG 925
            LAYIR+E+K+PL+GIRF HKLLE ++ SE+Q+Q+LETSDACE+QIMTII+ +DL  +EEG
Sbjct: 891  LAYIREEMKSPLSGIRFTHKLLEDTATSEHQKQFLETSDACEKQIMTIIEDIDLAKLEEG 950

Query: 926  NMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDF 985
             +ELK EEF L N+LDA+VSQ+M+LLR++++ L H+IPEEIK +S+ GD+IRLQLVLSDF
Sbjct: 951  KIELKVEEFFLVNVLDAIVSQIMLLLRERSIQLFHEIPEEIKTVSVYGDQIRLQLVLSDF 1010

Query: 986  LHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ 1045
            L  VVRHAPSPDGWVEIKV  GLKL++D+ +F+ VQ R+THPG+G+PS L EDM+   N 
Sbjct: 1011 LLSVVRHAPSPDGWVEIKVSSGLKLMQDSHEFLRVQIRMTHPGQGLPSALTEDMFEEGNC 1070

Query: 1046 WTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRGRQK 1092
            WTT EGL LKLSRKLL  MNG V Y RE++KC+F+IDLELK + RQK
Sbjct: 1071 WTTQEGLALKLSRKLLHQMNGHVHYTREHNKCFFLIDLELKLKNRQK 1117


>gi|183239028|gb|ACC60972.1| phytochrome E [Vitis riparia]
          Length = 1124

 Score = 1670 bits (4325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 803/1108 (72%), Positives = 928/1108 (83%), Gaps = 36/1108 (3%)

Query: 17   HNTTPFKSSDAKMKPVNKGKT-IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGV 75
            H T  F SS A        +   I  YNADA LLAEFEQS  SGKSFNYSRSV++ PE V
Sbjct: 14   HRTPTFSSSAASNMNNPNSRNNTIAQYNADARLLAEFEQSGESGKSFNYSRSVMNAPESV 73

Query: 76   PEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLI 135
            PE+QI AYLS+IQRGGL+QPFGCMLA+EEPTFRII YSEN ++ L L + SE  +L  LI
Sbjct: 74   PEDQIIAYLSRIQRGGLVQPFGCMLAIEEPTFRIISYSENSMDFLGLNTLSETTQLKSLI 133

Query: 136  GIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLE 195
            G+D RTLFTPPS ASLAKAA SREISLLNPI VHS  RS +K FYAILHRIDVGIVIDLE
Sbjct: 134  GVDVRTLFTPPSSASLAKAAMSREISLLNPIWVHS--RSAQKTFYAILHRIDVGIVIDLE 191

Query: 196  PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
            P++SGDPALSLAGAVQSQKLAV AISRLQ+LPGGDIG+LCDTVVEDVQKLTGYDRVM+Y 
Sbjct: 192  PTRSGDPALSLAGAVQSQKLAVRAISRLQSLPGGDIGVLCDTVVEDVQKLTGYDRVMVYK 251

Query: 256  FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
            FHDDDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVR+ICDC+A  V VIQS
Sbjct: 252  FHDDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRIICDCNAKAVRVIQS 311

Query: 316  KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPR 375
            +ELKQPLCLVNSTLRSPHGCHLQYM NMG IASL MAV+IN  D+ KLWGLVVCHHTSPR
Sbjct: 312  EELKQPLCLVNSTLRSPHGCHLQYMVNMGCIASLAMAVVINGNDATKLWGLVVCHHTSPR 371

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
            Y+PFPLRYACEFL+QAF LQLYMELQ+A QLAEK ILR Q LLCDMLLR+AP  IVT SP
Sbjct: 372  YVPFPLRYACEFLMQAFGLQLYMELQLASQLAEKKILRMQTLLCDMLLREAPLGIVTHSP 431

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            SIMDL+KCDGAAL+YGGRCWL+GVTPTESQ+KDIA WLL  HGD TGLSTDSLA+AGYPG
Sbjct: 432  SIMDLLKCDGAALHYGGRCWLLGVTPTESQVKDIAEWLLTEHGDSTGLSTDSLADAGYPG 491

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            AALLG AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPE KD+GG+MHPRSSFKAF
Sbjct: 492  AALLGDAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEDKDDGGRMHPRSSFKAF 551

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK+RS PWEVSEINAIHSLQ++MRDSFQ++E+ +  KV  + Q+  S+MQG++ELSS
Sbjct: 552  LEVVKSRSLPWEVSEINAIHSLQLIMRDSFQDIEDSS-GKVMVHAQKYDSEMQGLNELSS 610

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            VACEMV+LIETATAPIFGVDSSG INGWNAK+AELT L A EAMGKSL+DE+VHE+ +GA
Sbjct: 611  VACEMVKLIETATAPIFGVDSSGCINGWNAKIAELTELQAKEAMGKSLVDEIVHEDLRGA 670

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+NL+CRAL G+EDKNVELKL+KF L +Q S +YI+VNACTSRDY N++ GVCFVGQDIT
Sbjct: 671  VDNLLCRALQGKEDKNVELKLKKFGLNQQDSALYIVVNACTSRDYTNDIVGVCFVGQDIT 730

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
             EK++MDKFIRLQGDY+AI+QS+NPLIPPIFASD NACCSEWN ++EK+TGWMRHEVI  
Sbjct: 731  SEKIVMDKFIRLQGDYKAIVQSLNPLIPPIFASDGNACCSEWNTSLEKLTGWMRHEVIRK 790

Query: 794  ----------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRT 825
                                         I+GQ TE FPFGFF++ G+ VEV LTA++RT
Sbjct: 791  MLPGEVFGGLCPLKSQDTLTRFTILLYQAISGQDTEKFPFGFFDKSGKLVEVLLTANKRT 850

Query: 826  DAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHK 885
            DA G VIGCFCF+QI  PD    L   G E  + ++K KELAYIRQE+KNPLNGIRF HK
Sbjct: 851  DANGNVIGCFCFLQIDTPDKHQGL-GDGPEYRECFSKFKELAYIRQEMKNPLNGIRFTHK 909

Query: 886  LLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVS 945
            LLE+++ S  Q+Q+LETS+ACERQ+M+II  +D+  IEEG+MEL  EEFLLGN+LDAVVS
Sbjct: 910  LLETTATSVYQKQFLETSEACERQMMSIIADIDMGIIEEGSMELNVEEFLLGNVLDAVVS 969

Query: 946  QVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVL 1005
            QVM+LL++K L L+ +IPEEIK L L+GD+I+LQ VLSDFLH +V HAPS DGW+EIK+ 
Sbjct: 970  QVMMLLKEKKLQLVCEIPEEIKTLPLSGDQIKLQQVLSDFLHNIVHHAPSSDGWIEIKIS 1029

Query: 1006 PGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMN 1065
             GLK+I+D ++F+H+QFR+TH G+G+P  LI+DM+ G +QW T EGLGL LSRKLL  MN
Sbjct: 1030 TGLKMIQDFNEFIHLQFRMTHIGQGLPPDLIQDMFEGGDQWNTQEGLGLNLSRKLLSAMN 1089

Query: 1066 GRVRYVRENSKCYFVIDLELKT-RGRQK 1092
            GRV+YVRE+ KCYF+++++LK  R R+K
Sbjct: 1090 GRVQYVREHGKCYFLVEIDLKNRRAREK 1117


>gi|225463382|ref|XP_002271671.1| PREDICTED: phytochrome E [Vitis vinifera]
 gi|183239020|gb|ACC60968.1| phytochrome E [Vitis vinifera]
          Length = 1124

 Score = 1660 bits (4300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 800/1108 (72%), Positives = 924/1108 (83%), Gaps = 36/1108 (3%)

Query: 17   HNTTPFKSSDAKMKPVNKGKT-IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGV 75
            H T  F SS A        +   I  YNADA LLAEFEQS  SGKSFNYSRSV++ PE V
Sbjct: 14   HRTPTFSSSAASNMNNPNSRNNTIAQYNADARLLAEFEQSGESGKSFNYSRSVMNAPESV 73

Query: 76   PEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLI 135
            PE+QI AYLS++QRGGL+QPFGCMLA+EEPTFRII YSEN ++ L L + SE  +L  LI
Sbjct: 74   PEDQIIAYLSRVQRGGLVQPFGCMLAIEEPTFRIISYSENSMDFLGLNTLSETTQLKSLI 133

Query: 136  GIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLE 195
            G+D RTLFTPPS ASLAKAA SREISLLNPI VHS  RS +K FYAILHRIDVGIVIDLE
Sbjct: 134  GVDVRTLFTPPSSASLAKAAMSREISLLNPIWVHS--RSAQKTFYAILHRIDVGIVIDLE 191

Query: 196  PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
            P++SGD ALSLAGAVQSQKLAV AISRLQ+LPGGDIG+LCDTVVEDVQKLTGYDRVM+Y 
Sbjct: 192  PTRSGDSALSLAGAVQSQKLAVRAISRLQSLPGGDIGVLCDTVVEDVQKLTGYDRVMVYK 251

Query: 256  FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
            FHDDDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVR+ICDC+A  V VIQS
Sbjct: 252  FHDDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRIICDCNAKAVRVIQS 311

Query: 316  KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPR 375
            +ELKQPLCLVNSTLRSPHGCHLQYM NMG IASL MAV+IN  D+ KLWGLVVCHHTSPR
Sbjct: 312  EELKQPLCLVNSTLRSPHGCHLQYMFNMGCIASLAMAVVINGNDATKLWGLVVCHHTSPR 371

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
            Y+PFPLRYACEFL+QAF LQLYMELQ+A QLAEK ILR Q LLCDMLLR+AP  IVT SP
Sbjct: 372  YVPFPLRYACEFLMQAFGLQLYMELQLASQLAEKKILRMQTLLCDMLLREAPLGIVTHSP 431

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            SIMDL+KCDGAALYYGGRCWL+GVTPTESQ+KDIA WLL  HGD TGLSTDSLA+AGYPG
Sbjct: 432  SIMDLLKCDGAALYYGGRCWLLGVTPTESQVKDIAEWLLTEHGDSTGLSTDSLADAGYPG 491

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            AALLG AVCGMATARITSKDFL WFRSHTAKEVKWGGAKHHPE KD+GG+MHPRSSFKAF
Sbjct: 492  AALLGDAVCGMATARITSKDFLLWFRSHTAKEVKWGGAKHHPEDKDDGGRMHPRSSFKAF 551

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK+RS PWEVS+INAIHSLQ++MRDSFQ++E+ +  KV  +TQ+  S+MQG++EL S
Sbjct: 552  LEVVKSRSLPWEVSDINAIHSLQLIMRDSFQDIEDSS-GKVMVHTQKYDSEMQGLNELGS 610

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            VACEMV+LIETATAPIFGVDSSG INGWNAK+AELTGL A EAMGKSL+DE+VHE+ +GA
Sbjct: 611  VACEMVKLIETATAPIFGVDSSGCINGWNAKIAELTGLQAKEAMGKSLVDEIVHEDLRGA 670

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+NL+CRAL G+EDKNVELKL+ F L +Q S +YI+VNACTSRDY N++ GVCFVGQDIT
Sbjct: 671  VDNLLCRALQGKEDKNVELKLKNFGLNQQDSALYIVVNACTSRDYTNDIVGVCFVGQDIT 730

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
             EK++MDKFIRLQGDY+AI+Q +NPLIPPIFASD NACCSEWN ++EK+TG MRHEVI  
Sbjct: 731  SEKIVMDKFIRLQGDYKAIVQCLNPLIPPIFASDGNACCSEWNTSLEKLTGCMRHEVIRK 790

Query: 794  ----------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRT 825
                                         I+GQ TE FPFGFF++ G+ VEV LTA++RT
Sbjct: 791  MLPGEVFGGLCPLKSQDTLTRFTILLYQAISGQDTEKFPFGFFDKSGKLVEVLLTANKRT 850

Query: 826  DAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHK 885
            DA G VIGCFCF+QI  PD    L   G E  + ++K KELAYIRQE+KNPLNGIRF HK
Sbjct: 851  DANGNVIGCFCFLQIDTPDKHQGL-GHGPEYRECFSKFKELAYIRQEMKNPLNGIRFTHK 909

Query: 886  LLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVS 945
            LLE+++ S  Q+Q+LETS+ACERQ+M+II  +D+  IEEG+MEL  EEFLLGN+LDAVVS
Sbjct: 910  LLETTATSVYQKQFLETSEACERQMMSIIADIDMGIIEEGSMELNVEEFLLGNVLDAVVS 969

Query: 946  QVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVL 1005
            QVM+LL++K L L+ +IPEEIK L L+GD+I+LQ VLSDFLH +V HAPS DGW+EIK+ 
Sbjct: 970  QVMMLLKEKKLQLVCEIPEEIKTLPLSGDQIKLQQVLSDFLHNIVHHAPSSDGWIEIKIS 1029

Query: 1006 PGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMN 1065
             GLK+I+D ++FVH+QFR+TH G+G+P  LI+DM+ G +QW T EGLGL LSRKLL  MN
Sbjct: 1030 TGLKMIQDFNEFVHLQFRMTHIGQGLPPDLIQDMFEGGDQWNTQEGLGLNLSRKLLSAMN 1089

Query: 1066 GRVRYVRENSKCYFVIDLELKT-RGRQK 1092
            GRV+YVRE+ KCYF++D++LK  R R+K
Sbjct: 1090 GRVQYVREHGKCYFLVDIDLKNRRAREK 1117


>gi|147775698|emb|CAN62723.1| hypothetical protein VITISV_030984 [Vitis vinifera]
          Length = 1162

 Score = 1642 bits (4253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/1109 (71%), Positives = 918/1109 (82%), Gaps = 37/1109 (3%)

Query: 17   HNTTPFKSSDAKMKPVNKGKT-IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGV 75
            H T  F SS A        +   I  YNADA LLAEFEQS  SGKSFNYSRSV++ PE V
Sbjct: 14   HRTPTFSSSAASNMNNPNSRNNTIAQYNADARLLAEFEQSGESGKSFNYSRSVMNAPESV 73

Query: 76   PEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLI 135
            PE+QI AYLS+ QRGGL+QPFGCMLA+EEPTFRII YSEN ++ L L + SE  +L  LI
Sbjct: 74   PEDQIIAYLSRXQRGGLVQPFGCMLAIEEPTFRIISYSENSMDFLGLNTLSETTQLKSLI 133

Query: 136  GIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLE 195
            G+D RTLFTPPS ASLAKAA SREISLLNPI VHS  RS +K FYAILHRIDVGIVIDLE
Sbjct: 134  GVDVRTLFTPPSSASLAKAAMSREISLLNPIWVHS--RSAQKTFYAILHRIDVGIVIDLE 191

Query: 196  PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
            P++SGD ALSLAGAVQSQKLAV AISRLQ+LPGGDIG+LCDTVVEDVQKLTGYDRVM+Y 
Sbjct: 192  PTRSGDXALSLAGAVQSQKLAVRAISRLQSLPGGDIGVLCDTVVEDVQKLTGYDRVMVYK 251

Query: 256  FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
            FHDDDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQN VR+ICDC+A  V VIQS
Sbjct: 252  FHDDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNXVRIICDCNAKAVRVIQS 311

Query: 316  KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPR 375
            +ELKQPLCLVNSTLRSPHGCHLQYM NMG IASL MAV+IN  D+ KLWGLVVCHHTSPR
Sbjct: 312  EELKQPLCLVNSTLRSPHGCHLQYMXNMGCIASLAMAVVINGNDATKLWGLVVCHHTSPR 371

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
            Y+PFPLRYACEFL+QAF LQLYMELQ+A QLAEK ILR Q LLCDMLLR+AP  IVT SP
Sbjct: 372  YVPFPLRYACEFLMQAFGLQLYMELQLASQLAEKKILRMQTLLCDMLLREAPLGIVTHSP 431

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            SIMDL+KCDGAALYYGGRCWL+GVTPTESQ+KDIA WLL  HGD TGLSTDSLA+AGYPG
Sbjct: 432  SIMDLLKCDGAALYYGGRCWLLGVTPTESQVKDIAEWLLTEHGDSTGLSTDSLADAGYPG 491

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            AALLG AVCGMATARITSKDFL WFRSHTAKEVKWGGAKHHPE KD+GG+MHPRSSFKAF
Sbjct: 492  AALLGDAVCGMATARITSKDFLXWFRSHTAKEVKWGGAKHHPEDKDDGGRMHPRSSFKAF 551

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK+RS PWEVS INAIHSLQ++MRDSFQ++E+ +  KV  + Q+  S+MQG++EL S
Sbjct: 552  LEVVKSRSLPWEVSXINAIHSLQLIMRDSFQDIEDSS-GKVMVHXQKYDSEMQGLNELXS 610

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            VACEMV+LIETATAPIFGVDSSG INGWNAK+AELT L A EAMGKSL+DE+VHE+ +GA
Sbjct: 611  VACEMVKLIETATAPIFGVDSSGCINGWNAKIAELTXLQAKEAMGKSLVDEIVHEDLRGA 670

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+NL+CRAL G+EDKNVELKL+ F L +Q S +YI+VNAC SRDY N++ GVCFVGQDIT
Sbjct: 671  VDNLLCRALQGKEDKNVELKLKNFGLNQQDSALYIVVNACXSRDYTNDIVGVCFVGQDIT 730

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
             EK++MDKFIRLQGDY+AI+Q +NPLIPPIFASD NACCSEWN ++EK+TG MRHEVI  
Sbjct: 731  SEKIVMDKFIRLQGDYKAIVQXLNPLIPPIFASDGNACCSEWNTSLEKLTGXMRHEVIRK 790

Query: 794  ----------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRT 825
                                         I+GQ TE FPFGFF++ G+ VEV LTA++RT
Sbjct: 791  MLPGEVFGGLCPLKSQDTLTRFTILLYQAISGQDTEKFPFGFFDKSGKLVEVLLTANKRT 850

Query: 826  DAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHK 885
            DA G VIGCFCF+QI  PD    L   G E  + ++K KELAYIRQE+KNPLNGIRF HK
Sbjct: 851  DANGNVIGCFCFLQIDTPDKHQGL-GHGPEYRECFSKFKELAYIRQEMKNPLNGIRFTHK 909

Query: 886  LLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN-MELKSEEFLLGNILDAVV 944
            LLE+++ S  Q+Q+LETS+ACERQ+M+II  +D+  IEEG+ MEL  EEFLLGN+LDAVV
Sbjct: 910  LLETTATSVYQKQFLETSEACERQMMSIIADIDMGIIEEGSSMELNVEEFLLGNVLDAVV 969

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+LL++K L L+ +IPEEIK L L+GD+I+LQ VLSDFLH +V HAPS DGW+EIK+
Sbjct: 970  SQVMMLLKEKKLQLVCEIPEEIKTLPLSGDQIKLQQVLSDFLHNIVHHAPSSDGWIEIKI 1029

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
              GLK+I+D ++F+H+QFR+TH G+G+P  LI+DM+ G +QW T EGLGL LSRKLL  M
Sbjct: 1030 STGLKMIQDFNEFIHLQFRMTHIGQGLPPDLIQDMFEGGDQWNTQEGLGLNLSRKLLSAM 1089

Query: 1065 NGRVRYVRENSKCYFVIDLELKT-RGRQK 1092
            NGRV+YVRE+ KCYF++D++LK  R R+K
Sbjct: 1090 NGRVQYVREHGKCYFLVDIDLKNRRAREK 1118


>gi|1730566|sp|P55004.1|PHYE_IPONI RecName: Full=Phytochrome E
 gi|1145714|gb|AAA84970.1| phytochrome E [Ipomoea nil]
          Length = 1115

 Score = 1583 bits (4100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 767/1096 (69%), Positives = 901/1096 (82%), Gaps = 37/1096 (3%)

Query: 25   SDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYL 84
            S +    +N GK I   YNADA L+AEFEQS  SGKSF+YSRSVI  P+ V EE++TAYL
Sbjct: 11   SSSATSNLNTGKAIA-QYNADAKLMAEFEQSRESGKSFDYSRSVIHAPQNVTEEEMTAYL 69

Query: 85   SKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLFT 144
            S+IQRGGLIQPFGCMLA+EEP+F+I+G+SENC ++L L+S  E  E   LIGIDARTLFT
Sbjct: 70   SRIQRGGLIQPFGCMLAIEEPSFKIVGFSENCFDLLGLKSGVEPPERMSLIGIDARTLFT 129

Query: 145  PPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPAL 204
              S ASLAKA ASREISLLNPI VHS     +KPFYA+LHRIDVGIVIDLEP+ S DPAL
Sbjct: 130  LSSRASLAKAVASREISLLNPIWVHSKIN--QKPFYAVLHRIDVGIVIDLEPANSADPAL 187

Query: 205  SLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEV 264
             LAGAVQSQKLAV AISRLQ+LPGGDIG LCDTVVEDVQKLTGYDRVM+Y FHDD HGEV
Sbjct: 188  LLAGAVQSQKLAVRAISRLQSLPGGDIGTLCDTVVEDVQKLTGYDRVMVYKFHDDSHGEV 247

Query: 265  VSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCL 324
            VSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV V+Q +ELKQPLCL
Sbjct: 248  VSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNAQPVKVLQCEELKQPLCL 307

Query: 325  VNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYA 384
            VNSTLRSPHGCH +YM NMGSIASLVMAV+INS +SMKLWGLVVCHHTSPRY+PFPLRYA
Sbjct: 308  VNSTLRSPHGCHTKYMANMGSIASLVMAVVINSSESMKLWGLVVCHHTSPRYVPFPLRYA 367

Query: 385  CEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCD 444
            CEFL+QAFSLQLYMELQ+A QLAEK IL+TQ LLCDMLLRDAPF IVTQ+PSIMDLV+CD
Sbjct: 368  CEFLMQAFSLQLYMELQLASQLAEKKILQTQTLLCDMLLRDAPFGIVTQTPSIMDLVRCD 427

Query: 445  GAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVC 504
            GAALYY G+CWL+GVTPTE+Q+KDIA WLL+NHGD TGLSTD L++AGYPGA LLG AV 
Sbjct: 428  GAALYYNGKCWLLGVTPTETQVKDIAEWLLHNHGDSTGLSTDCLSDAGYPGAPLLGDAVS 487

Query: 505  GMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSF 564
            GMATARITSKDFLFWFRSHTAKEVKWGGAKHHPE KD+GG+MHPRSSF AFLEVVK+RS 
Sbjct: 488  GMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEDKDDGGRMHPRSSFIAFLEVVKSRSL 547

Query: 565  PWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLI 624
            PWE SEINAIHSLQ++MRDS Q +  EN  K   + QQN S      ELSS+A E+VRL+
Sbjct: 548  PWEDSEINAIHSLQLIMRDSLQGI-GENYMKSVSSPQQNDSDGVRFYELSSMALELVRLV 606

Query: 625  ETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
            ETAT PIFGVDSSG INGWNAK+AELTGL A+ A+GK LID+V HE+S    + L+CRAL
Sbjct: 607  ETATVPIFGVDSSGLINGWNAKIAELTGLQANVAIGKYLIDDVTHEDSHETFKALMCRAL 666

Query: 685  LGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKF 744
             GEED+NVE+KL KF       VVY++VNACTSRDYKN++ GVCFVGQDIT EK +MDKF
Sbjct: 667  QGEEDRNVEVKLLKFGNHPTKEVVYLVVNACTSRDYKNDIIGVCFVGQDITPEKAVMDKF 726

Query: 745  IRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI----------- 793
            +RLQGDYEAIIQS+NPLIPPIFASDENACCSEWNAAME++TG ++ EVI           
Sbjct: 727  VRLQGDYEAIIQSLNPLIPPIFASDENACCSEWNAAMERLTGLVKCEVIGKRLPGEIFGG 786

Query: 794  -------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGC 834
                               GI+G  TE   FGFF+R+G F++V +TA++RTD  G +IGC
Sbjct: 787  LCRLKGQDALTKFMILLYQGISGHDTEKLSFGFFDRKGNFIDVFITANKRTDERGNIIGC 846

Query: 835  FCFMQILVPDLQPALEAQGLE-DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
            FCF+Q +  D  P + A+ +E D +  + +KE AYI+Q++KNPLNGIRF HKLLE +  S
Sbjct: 847  FCFLQTMAVD-HPQISARDIEDDRECLSTLKEFAYIQQQMKNPLNGIRFTHKLLEGTVTS 905

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGN-MELKSEEFLLGNILDAVVSQVMVLLR 952
            ++Q+Q+LETS+ACE+QI++II+ MD   I +GN +ELK+EEF++GN++DAVVSQVM+ L+
Sbjct: 906  DHQKQFLETSEACEKQILSIIENMDSGGIVDGNRVELKTEEFVIGNVIDAVVSQVMIPLK 965

Query: 953  DKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIK 1012
            +KNL LLHDIP++IK+L + GD+I+LQLVLSDFL  +VRHAPSPDGWVEI+V PGLKLI+
Sbjct: 966  EKNLQLLHDIPDQIKSLPIYGDQIKLQLVLSDFLLSIVRHAPSPDGWVEIRVSPGLKLIQ 1025

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVR 1072
            D + F+H+QFR+THPG+G+PS LIEDM  G  +WTT EG+ L LS+KL+ MMNG V YVR
Sbjct: 1026 DGNVFIHIQFRMTHPGQGLPSALIEDMVRGGTRWTTQEGVVLHLSQKLVRMMNGHVHYVR 1085

Query: 1073 ENSKCYFVIDLELKTR 1088
            E  KCYF+IDL+ KT+
Sbjct: 1086 EQQKCYFLIDLDFKTQ 1101


>gi|6708129|gb|AAF25812.1|AF178571_1 phytochrome E [Solanum lycopersicum]
          Length = 1137

 Score = 1563 bits (4046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 745/1094 (68%), Positives = 887/1094 (81%), Gaps = 38/1094 (3%)

Query: 24   SSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAY 83
            SS A     N  K  +  YNADA L+AEFEQS  SGKSF+YS+SV+ PP    EE+IT+Y
Sbjct: 34   SSAASNMKNNASKAALAQYNADAKLMAEFEQSSVSGKSFDYSKSVLFPPHEANEEEITSY 93

Query: 84   LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLF 143
            LS+IQRGGL+QPFGCM+A+EEPTF+IIGYSENC +ML  +         GLIG+DAR LF
Sbjct: 94   LSRIQRGGLVQPFGCMVAIEEPTFKIIGYSENCYDMLGFKPTKMKL---GLIGVDARNLF 150

Query: 144  TPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPA 203
            TP SG SLAK  ASREISLLNPI VHS  R+  KPFYAILHRIDVGIVIDLEP+ S DPA
Sbjct: 151  TPSSGDSLAKVMASREISLLNPIWVHS--RTTHKPFYAILHRIDVGIVIDLEPANSSDPA 208

Query: 204  LSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGE 263
            L LAGAVQSQKLAV +ISRLQ+LPGGDIG+LCDT VEDVQKLTGYDRVM+Y FHDD+HGE
Sbjct: 209  LLLAGAVQSQKLAVRSISRLQSLPGGDIGVLCDTAVEDVQKLTGYDRVMVYKFHDDNHGE 268

Query: 264  VVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLC 323
            +VSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV V+QS+ELKQP+C
Sbjct: 269  IVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNAQPVKVVQSEELKQPIC 328

Query: 324  LVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRY 383
            LVNSTLRSPH CH +YM NMGSI+SLVMA++INS DSMKLWGL+VCHHTSPRY+PFPLRY
Sbjct: 329  LVNSTLRSPHECHSKYMANMGSISSLVMAILINSGDSMKLWGLIVCHHTSPRYVPFPLRY 388

Query: 384  ACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKC 443
            ACEF  QAF LQL MELQ+A QLAEK  L+ Q LLCDMLLRD PF +VTQSPSIMDLVKC
Sbjct: 389  ACEFFTQAFGLQLNMELQLASQLAEKKTLQMQTLLCDMLLRDVPFGVVTQSPSIMDLVKC 448

Query: 444  DGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAV 503
            DGAALY GG+CWL+GVTPTE+Q+KDIA WLL  H D TGLSTD LA+AGYPGAALLG AV
Sbjct: 449  DGAALYCGGKCWLLGVTPTEAQVKDIAQWLLVAHKDSTGLSTDCLADAGYPGAALLGDAV 508

Query: 504  CGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRS 563
            CGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD+GGKMHPRSSF AFLEVVK+RS
Sbjct: 509  CGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPDDKDDGGKMHPRSSFNAFLEVVKSRS 568

Query: 564  FPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRL 623
             PWE+ EINAIHSLQI+MR+S QE  E +  K    +QQN +    +DELSSVA EMVRL
Sbjct: 569  LPWEIPEINAIHSLQIIMRESIQE-NENSSLKTLTTSQQNDADGPSMDELSSVAMEMVRL 627

Query: 624  IETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRA 683
            IETATAPIFGVD SG INGWN K+A+LTGL ASEA+G SLI+++ HE+S+G VE ++ RA
Sbjct: 628  IETATAPIFGVDPSGLINGWNEKIADLTGLHASEAVGMSLINDITHEDSRGTVEKVLHRA 687

Query: 684  LLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDK 743
            LLGEE+KNVE+KLR+F      SV+Y+++NACTSRD+KN V GV FV QD+T EK +MDK
Sbjct: 688  LLGEEEKNVEIKLRRFGKDPPGSVIYLVINACTSRDHKNGVVGVSFVAQDVTPEKFIMDK 747

Query: 744  FIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--------- 794
            FI+L+GDYEAI+QS++PLIPPIFASDENACCSEWNAAME++TGW ++EV+G         
Sbjct: 748  FIQLRGDYEAIVQSLSPLIPPIFASDENACCSEWNAAMERLTGWTKYEVMGRTLPGEVFG 807

Query: 795  ---------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                 I+G  T+  PFGFFNR+G+F+EV LTA++RTD  G V G
Sbjct: 808  GLCRLTGQDALTKFMILFYQAISGHDTKKLPFGFFNRRGEFLEVFLTANKRTDEHGNVCG 867

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
            CFCF+Q +  D + + E Q  +  D   K KE  Y+ Q++KNPLNGI+F HKLLE++ +S
Sbjct: 868  CFCFLQPMTIDPEASDERQ--DSKDSLWKYKEYVYVLQQMKNPLNGIQFTHKLLEATGVS 925

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            +NQ+Q LETS+ACE+QI+++ID MD   IE+G ++L  EEF+LGN++DA+VSQVM+ L++
Sbjct: 926  DNQKQLLETSEACEKQILSVIDNMDFGGIEDGKVQLNMEEFVLGNVVDAIVSQVMIFLKE 985

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKD 1013
            KNL LLHDIP++IK L L GD+I+LQ VLSDFL  VV HAPSPDGWVEIKVLPGLKLI+D
Sbjct: 986  KNLQLLHDIPDQIKTLPLYGDQIKLQRVLSDFLLSVVHHAPSPDGWVEIKVLPGLKLIQD 1045

Query: 1014 ADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRE 1073
             ++ +H+Q R+THPG+G+P+ LI+DM   RN+WTT EG+ L +++KLL +MNG VRYVR 
Sbjct: 1046 GNELIHLQLRMTHPGQGLPAALIDDMSGERNRWTTQEGIALNVAQKLLNVMNGHVRYVRG 1105

Query: 1074 NSKCYFVIDLELKT 1087
              KCYF+ID+EL+T
Sbjct: 1106 EDKCYFLIDVELQT 1119


>gi|356532946|ref|XP_003535030.1| PREDICTED: phytochrome E-like [Glycine max]
          Length = 1120

 Score = 1558 bits (4034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 738/1099 (67%), Positives = 894/1099 (81%), Gaps = 34/1099 (3%)

Query: 24   SSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAY 83
            S+ A+    +K   I+  Y+ADA +LAEFEQS  SGKSF+YSR V+ PP  V E+++TAY
Sbjct: 15   STSAESNMNSKRDKILAQYSADAEILAEFEQSGVSGKSFDYSRMVLDPPRLVSEQKMTAY 74

Query: 84   LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLF 143
            LSKIQRGGLIQPFGCMLA+EE TFRIIG+S+NC ++L L  + +  +  GLIG+DA TLF
Sbjct: 75   LSKIQRGGLIQPFGCMLAIEESTFRIIGFSDNCFQLLGLERQIDSKQFMGLIGVDATTLF 134

Query: 144  TPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPA 203
            TPPSGASLAKAAASREISLLNPI V++  R+ +KPFYAILHRIDVG+VIDLEP++  DPA
Sbjct: 135  TPPSGASLAKAAASREISLLNPIWVYA--RTTQKPFYAILHRIDVGVVIDLEPARMSDPA 192

Query: 204  LSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGE 263
            LSLAGAVQSQKLAV AISRLQ+LPG DIGLLCDTVVE+VQKLTGYDRVM+Y FH+DDHGE
Sbjct: 193  LSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGE 252

Query: 264  VVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLC 323
            VVSEIRRSDLEPYLG+H+PA DIPQA+RFLFKQNRVRMICDCHA PV VIQS+EL+QPLC
Sbjct: 253  VVSEIRRSDLEPYLGLHYPATDIPQASRFLFKQNRVRMICDCHAKPVKVIQSEELRQPLC 312

Query: 324  LVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRY 383
            LVNSTLR PHGCH QYM NMGSIASLVMA+++N K + +LWGL+VCHHTSPRY+ FP+RY
Sbjct: 313  LVNSTLRLPHGCHTQYMANMGSIASLVMAIVVNGKHATRLWGLLVCHHTSPRYVSFPVRY 372

Query: 384  ACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKC 443
            ACEFL+QAF LQLYME+Q+A Q+AEK IL+TQ LLCDMLLRDAP  IV QSPSIMDLVKC
Sbjct: 373  ACEFLMQAFGLQLYMEIQLASQMAEKRILKTQTLLCDMLLRDAPLGIVNQSPSIMDLVKC 432

Query: 444  DGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAV 503
            DGAALYY G CWL+G TPTE+Q+KDIA WLL+NHGD TGL+TDSLA+AGYPGAA LG AV
Sbjct: 433  DGAALYYEGNCWLLGTTPTEAQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAASLGDAV 492

Query: 504  CGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRS 563
            CGMATARI SK FLFWFRSHTAKEVKWGGAKHHPE KD+GGKM+PRSSFKAFLEVVK++S
Sbjct: 493  CGMATARINSKHFLFWFRSHTAKEVKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSKS 552

Query: 564  FPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRL 623
             PWEV EINAIHSLQ+++RDSFQ+  E    K     Q++ +   G+DELSSVA EMVRL
Sbjct: 553  LPWEVPEINAIHSLQLIIRDSFQDT-ENTGPKTLTYVQKSDTATGGMDELSSVALEMVRL 611

Query: 624  IETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRA 683
            IETAT PIFGVD  G INGWN K+AELTGL ASEAMGKSL++E++H +S    ++ + RA
Sbjct: 612  IETATVPIFGVDLGGVINGWNTKIAELTGLQASEAMGKSLVNEIIHADSCDTFKSTLSRA 671

Query: 684  LLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDK 743
            L G+EDKNVELK++ F L +Q  V Y++VNACTSRD+ + + GVCFVGQDIT EKV+ DK
Sbjct: 672  LQGQEDKNVELKIKHFGLDQQQEVAYLVVNACTSRDHTDAIVGVCFVGQDITCEKVVQDK 731

Query: 744  FIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI---------- 793
            FI+L+GDY+AIIQS++PLIPPIF+SDENACCSEWNAAME++TGW R EVI          
Sbjct: 732  FIQLEGDYKAIIQSLSPLIPPIFSSDENACCSEWNAAMERLTGWKRDEVIGKLLPGEIFG 791

Query: 794  --------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                GI+GQ +E  PFGFF+R G+F+E  +TA++R D  G ++G
Sbjct: 792  SFCRLKGQDTLTNFMILLYRGISGQDSEKIPFGFFDRNGEFIETYITANKRIDTGGNMLG 851

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
            CFCF+QI++PDL    E       +  ++ KELAYI QE+K PLNGIRF  KLLE++++S
Sbjct: 852  CFCFLQIVMPDLNQPSEEHKPRGRESISESKELAYILQEMKKPLNGIRFTRKLLENTAVS 911

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            ENQ+Q+L+TSDACERQI+ II+  +L  I EG ++L  EEF+LGNILDA+VSQVM+L+R+
Sbjct: 912  ENQKQFLDTSDACERQILAIIEDTNLGSINEGTLQLNMEEFVLGNILDAIVSQVMMLIRE 971

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKD 1013
            KNL L H+IP+EIK LSL GD+IRLQ+VLSDFL  VV H  SP+GWVEIK+ PGL L +D
Sbjct: 972  KNLQLFHEIPDEIKMLSLYGDQIRLQVVLSDFLLNVVSHTASPNGWVEIKISPGLTL-QD 1030

Query: 1014 ADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRE 1073
             ++F+H++F + H G+GIPS+++ DM+ G NQWTT EGLGL +SRK+L  ++G V+YVRE
Sbjct: 1031 GNEFIHLKFSMAHSGQGIPSNVLHDMFEGGNQWTTQEGLGLYMSRKILSRISGHVQYVRE 1090

Query: 1074 NSKCYFVIDLELKTRGRQK 1092
             +KCYF+IDLE++ R  +K
Sbjct: 1091 QNKCYFLIDLEIRKRKERK 1109


>gi|449459392|ref|XP_004147430.1| PREDICTED: phytochrome E-like [Cucumis sativus]
          Length = 1134

 Score = 1532 bits (3967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 722/1083 (66%), Positives = 884/1083 (81%), Gaps = 40/1083 (3%)

Query: 41   HYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCML 100
             YNADAGLL +FE S ASG+SFNYSRSV+  P  VPEEQITAYLSKIQRGGL+QPFGC+L
Sbjct: 43   QYNADAGLLNKFELSDASGESFNYSRSVLEAPVSVPEEQITAYLSKIQRGGLVQPFGCLL 102

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSRSEDFE----LNGLIGIDARTLFTPPSGASLAKAAA 156
            A+EE +F+II +SENC E+L L    + F       GLIG+D R LFTP SGASLAKAA+
Sbjct: 103  AIEESSFKIISFSENCFELLGLND--DQFGSAQGKKGLIGVDMRALFTPSSGASLAKAAS 160

Query: 157  SREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLA 216
            SREISLLNP+ V+S  R+ +KPFYAILHRIDVGIVIDLEP++S DPALSLAGAVQSQKLA
Sbjct: 161  SREISLLNPVWVYS--RTTQKPFYAILHRIDVGIVIDLEPARSVDPALSLAGAVQSQKLA 218

Query: 217  VSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPY 276
            V AISRLQALP GDIG+LCDTVVED+QKLTGYDRVM+Y FHDD+HGEVVSEIRRSDLEPY
Sbjct: 219  VRAISRLQALPSGDIGILCDTVVEDIQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPY 278

Query: 277  LGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCH 336
            LG+H+PA DIPQAARFLFKQNR+RMICDC+A PV VIQS +LKQPLCLVNST+R+PH CH
Sbjct: 279  LGLHYPAIDIPQAARFLFKQNRIRMICDCNAKPVPVIQSDDLKQPLCLVNSTIRAPHSCH 338

Query: 337  LQYMTNMGSIASLVMAVIINSKDS-MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQ 395
            LQYM NM +++SL MA+++NS DS  +LWGLVVCHHTSPRY+PFPLRYACEFL+QAF LQ
Sbjct: 339  LQYMANMSTLSSLAMAIVMNSDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQ 398

Query: 396  LYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCW 455
            LYMELQ+A QL EK IL+TQ LLCDMLLR +P +++T+SPSIMDLVKCDGAALYY G C+
Sbjct: 399  LYMELQLASQLTEKKILKTQTLLCDMLLRGSPCALLTRSPSIMDLVKCDGAALYYKGACY 458

Query: 456  LVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKD 515
            L+G+TPTE+Q+KD+A W+LNNHGD TGLSTDSLA+AGYP AA LG AVCGMATARITSKD
Sbjct: 459  LLGITPTEAQVKDLAEWILNNHGDSTGLSTDSLADAGYPEAASLGDAVCGMATARITSKD 518

Query: 516  FLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIH 575
            FLFWFRSH AKE++WGGAKHHP+ KD+ G+MHPRSSFKAFLEV K+RS  WEV EINAIH
Sbjct: 519  FLFWFRSHVAKEIQWGGAKHHPDDKDDSGRMHPRSSFKAFLEVAKSRSLSWEVQEINAIH 578

Query: 576  SLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVD 635
            SLQ++MR+SF    + N SK + + Q + ++MQ ++ELSSVACEMVRLIETAT PIFGVD
Sbjct: 579  SLQLIMRESFPNSGDSN-SKAENSPQLSDAEMQDINELSSVACEMVRLIETATVPIFGVD 637

Query: 636  SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELK 695
            S+G INGWNAK++EL GL   EA+GKSL++E+VHE+S+G  E+L+  AL G+EDKNVELK
Sbjct: 638  STGLINGWNAKISELVGLHTGEALGKSLVNEIVHEDSRGTAEDLLSCALQGKEDKNVELK 697

Query: 696  LRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAII 755
            LR F   K+H  VYI+VNACTSRDY N V GVCFVGQD+T EK +MDKFIRLQGDY+ II
Sbjct: 698  LRSFRTDKEHPNVYIVVNACTSRDYTNKVVGVCFVGQDLTSEKGVMDKFIRLQGDYKTII 757

Query: 756  QSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI---------------------- 793
            +S++PLIPP+F SDEN  C EW AAMEK+TGW ++EV+                      
Sbjct: 758  ESLSPLIPPMFVSDENGYCCEWTAAMEKLTGWRKNEVVGKMLAGEIFGNFCRLKGLDTLT 817

Query: 794  --------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDL 845
                    GI+GQ TE FP GFFN+ G +V+V LT+++RTDAEG  IGC CF+QI+ P+L
Sbjct: 818  RFMILLYQGISGQVTEKFPLGFFNKDGNYVDVLLTSNKRTDAEGNAIGCICFLQIVQPNL 877

Query: 846  QPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDA 905
               LE  G  D +   + KEL++++ EVKNPLNG+RF+H+LL +S I+ENQ+ +L+TSDA
Sbjct: 878  HGVLEGLGTGDREAILQHKELSFLKHEVKNPLNGLRFMHELLVNSGITENQKLFLDTSDA 937

Query: 906  CERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEE 965
            CERQIMTII+ MD R +E G +E+  ++FLLG++LDA++ Q+M+++R++N+ L H+IPEE
Sbjct: 938  CERQIMTIIEDMDFRSLEGGQVEINRQDFLLGSVLDAIICQIMIVVRERNIQLFHEIPEE 997

Query: 966  IKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLT 1025
            IK L+L GD+I+LQ+VLSDFL  +V++AP  DGWVEIK+  GLKLI+D ++ +H+Q R++
Sbjct: 998  IKTLTLCGDQIKLQMVLSDFLLNIVQYAPVLDGWVEIKISSGLKLIQDGNEHIHLQIRMS 1057

Query: 1026 HPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            HPG+G+P  LI+DM  G  QWT+ +GL L LSR+LL  +NG VRYVRE +KCYF+IDLEL
Sbjct: 1058 HPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLEL 1117

Query: 1086 KTR 1088
            K R
Sbjct: 1118 KLR 1120


>gi|356556523|ref|XP_003546574.1| PREDICTED: phytochrome E-like [Glycine max]
          Length = 1121

 Score = 1532 bits (3967), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 736/1103 (66%), Positives = 884/1103 (80%), Gaps = 41/1103 (3%)

Query: 24   SSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAY 83
            S+ A+     K   I+  Y+ADA +LAEFE S  SGKSF+YSR V+ P   V E+++TAY
Sbjct: 15   STSAESNTNTKRDKILAQYSADAEILAEFELSGVSGKSFDYSRMVLDPSRLVSEQKMTAY 74

Query: 84   LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLF 143
            LSKIQRGGLIQPFGCMLA+EE TFRIIGYS+NC ++L L  + +  +   LIG+DA TLF
Sbjct: 75   LSKIQRGGLIQPFGCMLAIEESTFRIIGYSDNCFQLLGLERQIDSKQFMNLIGVDATTLF 134

Query: 144  TPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPA 203
            TPPSGASLAKAAASREISLLNPI V++  R+ +KPFYAILHRIDVG+VIDLEP++  DP 
Sbjct: 135  TPPSGASLAKAAASREISLLNPIWVYA--RTTQKPFYAILHRIDVGVVIDLEPARMSDPT 192

Query: 204  LSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGE 263
            LSLAGAVQSQKLAV AISRLQ+LPG DIGLLCDTVVE+VQKLTGYDRVM+Y FH+DDHGE
Sbjct: 193  LSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYDRVMVYKFHEDDHGE 252

Query: 264  VVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM-ICDCHAIPVMVIQSKELKQPL 322
            VVSEIRRSDLEPYLG+H+PA DIPQA+RFLFKQNRVRM ICDCHA PV VIQS+EL+QPL
Sbjct: 253  VVSEIRRSDLEPYLGLHYPATDIPQASRFLFKQNRVRMMICDCHAKPVKVIQSEELRQPL 312

Query: 323  CLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLR 382
            CLVNSTLR PHGCH QYM NMGSIASLVMA+I+N KD+ +LWGL+VCHHTSPR + F +R
Sbjct: 313  CLVNSTLRLPHGCHTQYMANMGSIASLVMAIIVNGKDATRLWGLLVCHHTSPRSVSFLVR 372

Query: 383  YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
            YACEFL+Q F LQLYME+Q+A Q+AEK IL+TQ LLCDMLLRDAPF IV QSPSIMDLVK
Sbjct: 373  YACEFLMQTFGLQLYMEIQLASQMAEKRILKTQTLLCDMLLRDAPFGIVNQSPSIMDLVK 432

Query: 443  CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
            CDGAALYY G CWL+G TPTE+Q+KDIA WLL+NHGD TGL+TDSLA+AGYPGAA LG A
Sbjct: 433  CDGAALYYEGNCWLLGTTPTEAQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAASLGDA 492

Query: 503  VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
            VCGMATARI SK FLFWFRSHTAKEVKWGGAKHHPE KD+GGKM+PRSSFKAFLEVVK++
Sbjct: 493  VCGMATARINSKHFLFWFRSHTAKEVKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSK 552

Query: 563  SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVR 622
            S PWEV EINAIHSLQ+++RDSFQ+  E    K     Q++ +   G+DELSSVA +MVR
Sbjct: 553  SLPWEVLEINAIHSLQLIIRDSFQDT-ENTGPKTLSYVQKSDTAAGGMDELSSVALQMVR 611

Query: 623  LIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICR 682
            LIETAT PIFGVD  G INGWN K+AELTGL ASEAMGKSL++E++H +S    +N + R
Sbjct: 612  LIETATVPIFGVDLGGVINGWNTKIAELTGLQASEAMGKSLVNEIIHADSGDTFKNTLSR 671

Query: 683  ALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742
            AL G+EDKNVELK++ F L +Q  V  ++VNAC SRDY + + GVCFVG+DIT+EKV+ D
Sbjct: 672  ALQGQEDKNVELKIKHFGLDQQQEVACLMVNACISRDYTDAIVGVCFVGEDITYEKVVQD 731

Query: 743  KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI--------- 793
            KFI+L+GDY+AIIQS++PLIPPIF+SDEN CCSEWNAAME++TGW R EVI         
Sbjct: 732  KFIKLEGDYKAIIQSLSPLIPPIFSSDENVCCSEWNAAMERLTGWKRDEVIGKLLPGEIF 791

Query: 794  ---------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVI 832
                                 GI+ Q +E  PFGFF+R G+F+E  +TA+++ DA G ++
Sbjct: 792  GSFCRLKGQDTLTNFMILLYRGISRQDSEKLPFGFFHRNGEFIETYITANKKIDAGGNML 851

Query: 833  GCFCFMQILVPDL-QPALE--AQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLES 889
            GCFCF+QI++PDL QP+ E   +G E +       E AYI QE+K PLNGIRF  KLLE+
Sbjct: 852  GCFCFLQIVMPDLNQPSEEHNPRGRESI----SESEEAYILQEMKKPLNGIRFTRKLLEN 907

Query: 890  SSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMV 949
            +++SENQ+Q+L+TSDACERQIM II+   L  I E  ++L  EEF+LGNILDA+VSQVM+
Sbjct: 908  TTVSENQKQFLDTSDACERQIMAIIEDTHLGSINEDTLQLNVEEFVLGNILDAIVSQVMM 967

Query: 950  LLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLK 1009
            L+R+KNL L H+IP+EIK LSL GD+IRLQ+VLSDFL  VV H  SP+GWVEIKV P LK
Sbjct: 968  LIREKNLQLFHEIPDEIKMLSLYGDQIRLQVVLSDFLLNVVSHTASPNGWVEIKVSPTLK 1027

Query: 1010 LIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVR 1069
            +I+D D+F+H+QFR+ H G+GIPS++I +M  G NQWTT EGLGL +SRK+L  M+G VR
Sbjct: 1028 IIQDGDEFIHLQFRIAHSGQGIPSNVIHEMVEGGNQWTTQEGLGLYMSRKILRRMSGHVR 1087

Query: 1070 YVRENSKCYFVIDLELKTRGRQK 1092
            Y R    CYF+IDLE++TR  ++
Sbjct: 1088 YQRGQDMCYFLIDLEIRTRKERQ 1110


>gi|226234965|dbj|BAH47472.1| phytochrome E [Cardamine nipponica]
          Length = 1116

 Score = 1472 bits (3812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 707/1108 (63%), Positives = 871/1108 (78%), Gaps = 59/1108 (5%)

Query: 24   SSDAKMKPVNKGK---TIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQI 80
            S+ + MKP+   K   +    Y+ DAGL A+F+QSV SGKSFNYS+SVISP   V +E I
Sbjct: 8    SAASNMKPLGDSKPQKSNTAQYSVDAGLFADFDQSVYSGKSFNYSKSVISPHNHVSDEHI 67

Query: 81   TAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLE---MLDLRSRSEDFELN---GL 134
            TAYLS IQRGGL+QPFGC++AVEEP+FRI+G SENC+E   +L L S S+  E N   GL
Sbjct: 68   TAYLSNIQRGGLVQPFGCLIAVEEPSFRILGVSENCIEFLGLLSLDSTSQCAEFNNVKGL 127

Query: 135  IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
            IGIDARTLF+P SGASL+KAA+  EISLLNP+LVHS  ++ +KPFYAILHRID GIVIDL
Sbjct: 128  IGIDARTLFSPSSGASLSKAASFTEISLLNPVLVHS--KTTQKPFYAILHRIDAGIVIDL 185

Query: 195  EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
            E +KSGDPAL+LAGAVQSQKLAV AISRLQ+LPGGDIG LCDTVVEDVQ+LTGYDRVM+Y
Sbjct: 186  EAAKSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDRVMVY 245

Query: 255  NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
             FH+DDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV ++Q
Sbjct: 246  QFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATPVKIVQ 305

Query: 315  SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP 374
            S+ELK+PLCLVNSTLR+PH CH QYM NMGSIASL +A+++  KDS KLWGLVV HH SP
Sbjct: 306  SEELKRPLCLVNSTLRAPHSCHTQYMANMGSIASLALAIVVKGKDSSKLWGLVVGHHCSP 365

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            RY+PFPLRYACEFL+QAF LQL MELQ+  QLAEK  +RTQ LLCDMLLRD   +IVTQS
Sbjct: 366  RYVPFPLRYACEFLMQAFGLQLQMELQLTSQLAEKKAMRTQTLLCDMLLRDTVSAIVTQS 425

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD-CTGLSTDSLAEAGY 493
            P IMDLVKCDGAALYY G+CWLVGVTP+E Q+KD+  WL+ NHGD  TGL+TDSL + GY
Sbjct: 426  PGIMDLVKCDGAALYYKGKCWLVGVTPSELQVKDLVNWLVENHGDDSTGLTTDSLVDVGY 485

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGA   G A+CG+A A I+SKDFL WFRS+TA  +KWGGAKHHP++KD+ G+MHPRSSFK
Sbjct: 486  PGAISFGDAICGVAAAGISSKDFLLWFRSNTASAMKWGGAKHHPKNKDDAGRMHPRSSFK 545

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLEV K+RS PWE+SEI+AIHSL+++MR+SF      +   +  N  +     +  +EL
Sbjct: 546  AFLEVAKSRSLPWEISEIDAIHSLRLIMRESFTS----SRPVLSANVVE-----RDANEL 596

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
            +S  CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL +E+V EES+
Sbjct: 597  TSFVCEMVRVIETATAPIFGVDSSGCINGWNNKTAEMTGLQASEAMGKSLANEIVQEESR 656

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQ---HSVVYILVNACTSRDYKNNVKGVCFV 730
             A+E+L+C+AL GEE+KNV LKLRKF         S V++LVN+CTSRDY   + GVCFV
Sbjct: 657  AALESLMCKALQGEEEKNVMLKLRKFGHNNHPYYSSGVFVLVNSCTSRDYTEKIIGVCFV 716

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
            GQDIT EK + D+FIRLQGDY+ I+QS+NPLIPPIFASDENACCSEWNAAMEK+TGW +H
Sbjct: 717  GQDITSEKEITDRFIRLQGDYKTIVQSLNPLIPPIFASDENACCSEWNAAMEKLTGWSKH 776

Query: 791  EVIG---------------------------ITGQGTENFP----FGFFNRQGQFVEVAL 819
            EVIG                             G  + + P     GFFN++G+++E +L
Sbjct: 777  EVIGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIASHDIPESSLLGFFNKEGKYIEASL 836

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            TA++ T+ EGKVIGCF F+QI+  D    L   GL++      + EL Y++QE+KNPL+G
Sbjct: 837  TANKSTNTEGKVIGCFFFLQIISGD--SGLSCPGLKES--AQSLNELTYMKQEIKNPLSG 892

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNI 939
            IRF HKLLESS ISE QR++LETSDACE+QI TII+G DL+ IEEGN++L++EEF L  I
Sbjct: 893  IRFAHKLLESSEISETQRKFLETSDACEKQITTIIEGTDLKSIEEGNLKLETEEFRLEYI 952

Query: 940  LDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW 999
            LD+++SQVM++L+++N  L  ++ EEIK L L GDR++LQL+L+D L  +V HAP PD W
Sbjct: 953  LDSIISQVMIMLKERNSQLRVEVTEEIKTLPLYGDRVKLQLILADLLCNIVNHAPFPDSW 1012

Query: 1000 VEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRK 1059
            V I + PG +L +D  +++H+QFR+THPG+G+PS ++ DM++ R+ W TP+GLGLKLSRK
Sbjct: 1013 VGINISPGHELARDNGRYIHLQFRMTHPGKGLPSEMVSDMFDTRDGWVTPDGLGLKLSRK 1072

Query: 1060 LLIMMNGRVRYVRENSKCYFVIDLELKT 1087
            LL  MNGRV YVRE+ +C+F++DL++KT
Sbjct: 1073 LLEQMNGRVSYVREDERCFFLVDLQVKT 1100


>gi|226234981|dbj|BAH47471.1| phytochrome E [Cardamine nipponica]
          Length = 1116

 Score = 1472 bits (3812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 707/1108 (63%), Positives = 871/1108 (78%), Gaps = 59/1108 (5%)

Query: 24   SSDAKMKPVNKGK---TIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQI 80
            S+ + MKP+   K   +    Y+ DAGL A+F+QSV SGKSFNYS+SVISP   V +E I
Sbjct: 8    SAASNMKPLGDSKPQKSNTAQYSVDAGLFADFDQSVYSGKSFNYSKSVISPHNHVSDEHI 67

Query: 81   TAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLE---MLDLRSRSEDFELN---GL 134
            TAYLS IQRGGL+QPFGC++AVEEP+FRI+G SENC+E   +L L S S+  E N   GL
Sbjct: 68   TAYLSNIQRGGLVQPFGCLIAVEEPSFRILGVSENCIEFLGLLSLDSTSQCAEFNNVKGL 127

Query: 135  IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
            IGIDARTLF+P SGASL+KAA+  EISLLNP+LVHS  ++ +KPFYAILHRID GIVIDL
Sbjct: 128  IGIDARTLFSPSSGASLSKAASFTEISLLNPVLVHS--KTTQKPFYAILHRIDAGIVIDL 185

Query: 195  EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
            E +KSGDPAL+LAGAVQSQKLAV AISRLQ+LPGGDIG LCDTVVEDVQ+LTGYDRVM+Y
Sbjct: 186  EAAKSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDRVMVY 245

Query: 255  NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
             FH+DDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV ++Q
Sbjct: 246  QFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATPVKIVQ 305

Query: 315  SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP 374
            S+ELK+PLCLVNSTLR+PH CH QYM NMGSIASL +A+++  KDS KLWGLVV HH SP
Sbjct: 306  SEELKRPLCLVNSTLRAPHSCHTQYMANMGSIASLALAIVVKGKDSSKLWGLVVGHHCSP 365

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            RY+PFPLRYACEFL+QAF LQL MELQ+  QLAEK  +RTQ LLCDMLLRD   +IVTQS
Sbjct: 366  RYVPFPLRYACEFLMQAFGLQLQMELQLTSQLAEKKAMRTQTLLCDMLLRDTVSAIVTQS 425

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD-CTGLSTDSLAEAGY 493
            P IMDLVKCDGAALYY G+CWLVGVTP+E Q+KD+  WL+ NHGD  TGL+TDSL + GY
Sbjct: 426  PGIMDLVKCDGAALYYKGKCWLVGVTPSELQVKDLVNWLVENHGDDSTGLTTDSLVDVGY 485

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGA   G A+CG+A A I+SKDFL WFRS+TA  +KWGGAKHHP++KD+ G+MHPRSSFK
Sbjct: 486  PGAISFGDAICGVAAAGISSKDFLLWFRSNTASAMKWGGAKHHPKNKDDAGRMHPRSSFK 545

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLEV K+RS PWE+SEI+AIHSL+++MR+SF      +   +  N  +     +  +EL
Sbjct: 546  AFLEVAKSRSLPWEISEIDAIHSLRLIMRESFTS----SRPVLSANVVE-----RDANEL 596

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
            +S  CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL +E+V EES+
Sbjct: 597  TSFVCEMVRVIETATAPIFGVDSSGCINGWNNKTAEMTGLQASEAMGKSLANEIVQEESR 656

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQ---HSVVYILVNACTSRDYKNNVKGVCFV 730
             A+E+L+C+AL GEE+KNV LKLRKF         S V++LVN+CTSRDY   + GVCFV
Sbjct: 657  AALESLMCKALQGEEEKNVMLKLRKFGHNNHPYYSSGVFVLVNSCTSRDYTEKIIGVCFV 716

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
            GQDIT EK + D+FIRLQGDY+ I+QS+NPLIPPIFASDENACCSEWNAAMEK+TGW +H
Sbjct: 717  GQDITSEKEITDRFIRLQGDYKTIVQSLNPLIPPIFASDENACCSEWNAAMEKLTGWSKH 776

Query: 791  EVIG---------------------------ITGQGTENFP----FGFFNRQGQFVEVAL 819
            EVIG                             G  + + P     GFFN++G+++E +L
Sbjct: 777  EVIGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIASHDIPESSLLGFFNKEGKYIEASL 836

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            TA++ T+ EGKVIGCF F+QI+  D    L   GL++      + EL Y++QE+KNPL+G
Sbjct: 837  TANKSTNTEGKVIGCFFFLQIISGD--SGLSCPGLKES--AQSLNELTYMKQEIKNPLSG 892

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNI 939
            IRF HKLLESS ISE QR++LETSDACE+QI TII+G DL+ IEEGN++L++EEF L  I
Sbjct: 893  IRFAHKLLESSEISETQRKFLETSDACEKQITTIIEGADLKSIEEGNLKLETEEFRLEYI 952

Query: 940  LDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW 999
            LD+++SQVM++L+++N  L  ++ EEIK L L GDR++LQL+L+D L  +V HAP PD W
Sbjct: 953  LDSIISQVMIMLKERNSQLRVEVTEEIKTLPLYGDRVKLQLILADLLCNIVNHAPFPDSW 1012

Query: 1000 VEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRK 1059
            V I + PG +L +D  +++H+QFR+THPG+G+PS ++ DM++ R+ W TP+GLGLKLSRK
Sbjct: 1013 VGINISPGHELARDNGRYIHLQFRMTHPGKGLPSEMVSDMFDTRDGWVTPDGLGLKLSRK 1072

Query: 1060 LLIMMNGRVRYVRENSKCYFVIDLELKT 1087
            LL  MNGRV YVRE+ +C+F++DL++KT
Sbjct: 1073 LLEQMNGRVSYVREDERCFFLVDLQVKT 1100


>gi|226234969|dbj|BAH47474.1| phytochrome E [Cardamine nipponica]
          Length = 1116

 Score = 1471 bits (3808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 706/1108 (63%), Positives = 870/1108 (78%), Gaps = 59/1108 (5%)

Query: 24   SSDAKMKPVNKGK---TIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQI 80
            S+ + MKP+   K   +    Y+ DAGL A+F+QSV SGKSFNYS+SVISP   V +E I
Sbjct: 8    SAASNMKPLGDSKPQKSNTAQYSVDAGLFADFDQSVYSGKSFNYSKSVISPHNHVSDEHI 67

Query: 81   TAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLE---MLDLRSRSEDFELN---GL 134
            TAYLS IQRGGL+QPFGC++AVEEP+FRI+G SENC+E   +L L S S+  E N   GL
Sbjct: 68   TAYLSNIQRGGLVQPFGCLIAVEEPSFRILGVSENCIEFLGLLSLDSTSQCAEFNNVKGL 127

Query: 135  IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
            IGIDARTLF+P SGASL+KAA+  EISLLNP+LVHS  ++ +KPFYAILHRID GIVIDL
Sbjct: 128  IGIDARTLFSPSSGASLSKAASFTEISLLNPVLVHS--KTTQKPFYAILHRIDAGIVIDL 185

Query: 195  EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
            E +KSGDPAL+LAGAVQSQKLAV AISRLQ+LPGGDIG LCDTVVEDVQ+LTGYDRVM+Y
Sbjct: 186  EAAKSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDRVMVY 245

Query: 255  NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
             FH+DDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV ++Q
Sbjct: 246  QFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATPVKIVQ 305

Query: 315  SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP 374
            S+ELK+PLCLVNSTLR+PH CH QYM NMGSIASL +A+++  KDS KLWGLVV HH SP
Sbjct: 306  SEELKRPLCLVNSTLRAPHSCHTQYMANMGSIASLALAIVVKGKDSSKLWGLVVGHHCSP 365

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            RY+PFPLRYACEFL+QAF LQL MELQ+  QLAEK  +RTQ LLCDMLLRD   +IVTQS
Sbjct: 366  RYVPFPLRYACEFLIQAFGLQLQMELQLTSQLAEKKAMRTQTLLCDMLLRDTVSAIVTQS 425

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD-CTGLSTDSLAEAGY 493
            P IMDLVKCDGAALYY G+CWLVGVTP+E Q+KD+  WL+ NHGD  TGL+TDSL + GY
Sbjct: 426  PGIMDLVKCDGAALYYKGKCWLVGVTPSELQVKDLVNWLVENHGDDSTGLTTDSLVDVGY 485

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGA   G A+CG+A A I+SKDFL WFRS+TA  +KWGGAKHHP++KD+ G+MHPRSSFK
Sbjct: 486  PGAISFGDAICGVAAAGISSKDFLLWFRSNTASAMKWGGAKHHPKNKDDAGRMHPRSSFK 545

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLEV K+RS PWE+SEI+AIHSL+++MR+SF      +   +  N  +     +  +EL
Sbjct: 546  AFLEVAKSRSLPWEISEIDAIHSLRLIMRESFTS----SRPVLSANVVE-----RDANEL 596

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
            +S  CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL +E+V EES+
Sbjct: 597  TSFVCEMVRVIETATAPIFGVDSSGCINGWNNKTAEMTGLQASEAMGKSLANEIVQEESR 656

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQ---HSVVYILVNACTSRDYKNNVKGVCFV 730
             A+E+L+C+AL GEE+KNV LKLRKF         S V++LVN+CTSRDY   + GVCFV
Sbjct: 657  AALESLMCKALQGEEEKNVMLKLRKFGHNNHPYYSSGVFVLVNSCTSRDYTEKIIGVCFV 716

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
            GQDIT EK + D+FIRLQGDY+ I+QS+NPLIPPIFASDENACCSEWNAAMEK+TGW +H
Sbjct: 717  GQDITSEKEITDRFIRLQGDYKTIVQSLNPLIPPIFASDENACCSEWNAAMEKLTGWSKH 776

Query: 791  EVIG---------------------------ITGQGTENFP----FGFFNRQGQFVEVAL 819
            EVIG                             G  + + P     GFFN++G+++  +L
Sbjct: 777  EVIGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIASHDIPESSLLGFFNKEGKYIVASL 836

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            TA++ T+ EGKVIGCF F+QI+  D    L   GL++      + EL Y++QE+KNPL+G
Sbjct: 837  TANKSTNTEGKVIGCFFFLQIISGD--SGLSCPGLKES--AQSLNELTYMKQEIKNPLSG 892

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNI 939
            IRF HKLLESS ISE QR++LETSDACE+QI TII+G DL+ IEEGN++L++EEF L  I
Sbjct: 893  IRFAHKLLESSEISETQRKFLETSDACEKQITTIIEGTDLKSIEEGNLKLETEEFRLEYI 952

Query: 940  LDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW 999
            LD+++SQVM++L+++N  L  ++ EEIK L L GDR++LQL+L+D L  +V HAP PD W
Sbjct: 953  LDSIISQVMIMLKERNSQLRVEVTEEIKTLPLYGDRVKLQLILADLLCNIVNHAPFPDSW 1012

Query: 1000 VEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRK 1059
            V I + PG +L +D  +++H+QFR+THPG+G+PS ++ DM++ R+ W TP+GLGLKLSRK
Sbjct: 1013 VGINISPGHELARDNGRYIHLQFRMTHPGKGLPSEMVSDMFDTRDGWVTPDGLGLKLSRK 1072

Query: 1060 LLIMMNGRVRYVRENSKCYFVIDLELKT 1087
            LL  MNGRV YVRE+ +C+F++DL++KT
Sbjct: 1073 LLEQMNGRVSYVREDERCFFLVDLQVKT 1100


>gi|452817|emb|CAA54075.1| phytochrome E [Arabidopsis thaliana]
 gi|5816999|emb|CAB53654.1| phytochrome E [Arabidopsis thaliana]
 gi|7268606|emb|CAB78815.1| phytochrome E [Arabidopsis thaliana]
          Length = 1112

 Score = 1471 bits (3807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 709/1106 (64%), Positives = 866/1106 (78%), Gaps = 59/1106 (5%)

Query: 24   SSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAY 83
            S+ + MKP    K+    Y+ DA L A+F QS+ +GKSFNYS+SVISPP  VP+E ITAY
Sbjct: 8    SAASNMKP-QPQKSNTAQYSVDAALFADFAQSIYTGKSFNYSKSVISPPNHVPDEHITAY 66

Query: 84   LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDL-----RSRSEDFE-LNGLIGI 137
            LS IQRGGL+QPFGC++AVEEP+FRI+G S+N  + L L      S S +F+ + GLIGI
Sbjct: 67   LSNIQRGGLVQPFGCLIAVEEPSFRILGLSDNSSDFLGLLSLPSTSHSGEFDKVKGLIGI 126

Query: 138  DARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPS 197
            DARTLFTP SGASL+KAA+  EISLLNP+LVHS  R+ +KPFYAILHRID GIV+DLEP+
Sbjct: 127  DARTLFTPSSGASLSKAASFTEISLLNPVLVHS--RTTQKPFYAILHRIDAGIVMDLEPA 184

Query: 198  KSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFH 257
            KSGDPAL+LAGAVQSQKLAV AISRLQ+LPGGDIG LCDTVVEDVQ+LTGYDRVM+Y FH
Sbjct: 185  KSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDRVMVYQFH 244

Query: 258  DDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKE 317
            +DDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV V+QS+E
Sbjct: 245  EDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATPVKVVQSEE 304

Query: 318  LKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYI 377
            LK+PLCLVNSTLR+PHGCH QYM NMGS+ASL +A+++  KDS KLWGLVV HH SPRY+
Sbjct: 305  LKRPLCLVNSTLRAPHGCHTQYMANMGSVASLALAIVVKGKDSSKLWGLVVGHHCSPRYV 364

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QLAEK  +RTQ LLCDMLLRD   +IVTQSP I
Sbjct: 365  PFPLRYACEFLMQAFGLQLQMELQLASQLAEKKAMRTQTLLCDMLLRDTVSAIVTQSPGI 424

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD-CTGLSTDSLAEAGYPGA 496
            MDLVKCDGAALYY G+CWLVGVTP ESQ+KD+  WL+ NHGD  TGL+TDSL +AGYPGA
Sbjct: 425  MDLVKCDGAALYYKGKCWLVGVTPNESQVKDLVNWLVENHGDDSTGLTTDSLVDAGYPGA 484

Query: 497  ALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFL 556
              LG AVCG+A A  +SKD+L WFRS+TA  +KWGGAKHHP+ KD+ G+MHPRSSF AFL
Sbjct: 485  ISLGDAVCGVAAAEFSSKDYLLWFRSNTASAIKWGGAKHHPKDKDDAGRMHPRSSFTAFL 544

Query: 557  EVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSV 616
            EV K+RS PWE+SEI+AIHSL+++MR+SF      +   + GN        +  +EL+S 
Sbjct: 545  EVAKSRSLPWEISEIDAIHSLRLIMRESFTS----SRPVLSGN-----GVARDANELTSF 595

Query: 617  ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
             CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL DE+V EES+ A+
Sbjct: 596  VCEMVRVIETATAPIFGVDSSGCINGWNKKTAEMTGLLASEAMGKSLADEIVQEESRAAL 655

Query: 677  ENLICRALLGEEDKNVELKLRKFELQKQH----SVVYILVNACTSRDYKNNVKGVCFVGQ 732
            E+L+C+AL GEE+K+V LKLRKF  Q  H    S V +LVN+CTSRDY  N+ GVCFVGQ
Sbjct: 656  ESLLCKALQGEEEKSVMLKLRKFG-QNNHPDYSSDVCVLVNSCTSRDYTENIIGVCFVGQ 714

Query: 733  DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV 792
            DIT EK + D+FIRLQGDY+ I+QS+NPLIPPIFASDENACCSEWNAAMEK+TGW +HEV
Sbjct: 715  DITSEKAITDRFIRLQGDYKTIVQSLNPLIPPIFASDENACCSEWNAAMEKLTGWSKHEV 774

Query: 793  IG---------------------------ITGQGTENFP----FGFFNRQGQFVEVALTA 821
            IG                             G   +N P      FFN++G+++E +LTA
Sbjct: 775  IGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIAGDNVPESSLVEFFNKEGKYIEASLTA 834

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++ T+ EGKVI CF F+QI+  + +  L    L++      + EL Y+RQE+KNPLNGIR
Sbjct: 835  NKSTNIEGKVIRCFFFLQII--NKESGLSCPELKES--AQSLNELTYVRQEIKNPLNGIR 890

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F HKLLESS IS +QRQ+LETSDACE+QI TII+  DL+ IEEG ++L++EEF L NILD
Sbjct: 891  FAHKLLESSEISASQRQFLETSDACEKQITTIIESTDLKSIEEGKLQLETEEFRLENILD 950

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
             ++SQVM++LR++N  L  ++ EEIK L LNGDR++LQL+L+D L  +V HAP P+ WV 
Sbjct: 951  TIISQVMIILRERNSQLRVEVAEEIKTLPLNGDRVKLQLILADLLRNIVNHAPFPNSWVG 1010

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            I + PG +L +D  +++H+QFR+ HPG+G+PS ++ DM+  R+ W TP+GLGLKLSRKLL
Sbjct: 1011 ISISPGQELSRDNGRYIHLQFRMIHPGKGLPSEMLSDMFETRDGWVTPDGLGLKLSRKLL 1070

Query: 1062 IMMNGRVRYVRENSKCYFVIDLELKT 1087
              MNGRV YVRE+ +C+F +DL++KT
Sbjct: 1071 EQMNGRVSYVREDERCFFQVDLQVKT 1096


>gi|226234967|dbj|BAH47473.1| phytochrome E [Cardamine nipponica]
          Length = 1116

 Score = 1470 bits (3805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 706/1108 (63%), Positives = 870/1108 (78%), Gaps = 59/1108 (5%)

Query: 24   SSDAKMKPVNKGK---TIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQI 80
            S+ + MKP+   K   +    Y+ DAGL A+F+QSV SGKSFNYS+SVISP   V +E I
Sbjct: 8    SAASNMKPLGDSKPQKSNTAQYSVDAGLFADFDQSVYSGKSFNYSKSVISPHNHVSDEHI 67

Query: 81   TAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLE---MLDLRSRSEDFELN---GL 134
            TAYLS IQRGGL+QPFGC++AVEEP+FRI+G SENC+E   +L L S S+  E N   GL
Sbjct: 68   TAYLSNIQRGGLVQPFGCLIAVEEPSFRILGVSENCIEFLGLLSLDSTSQCAEFNNVKGL 127

Query: 135  IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
            IGIDARTLF+P SGASL+KAA+  EISLLNP+LVHS  ++ +KPFYAILHRID GIVIDL
Sbjct: 128  IGIDARTLFSPSSGASLSKAASFTEISLLNPVLVHS--KTTQKPFYAILHRIDAGIVIDL 185

Query: 195  EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
            E +KSGDPAL+LAGAVQSQKLAV AISRLQ+LPGGDIG LCDTVVEDVQ+LTGYDRVM+Y
Sbjct: 186  EAAKSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDRVMVY 245

Query: 255  NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
             FH+DDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV ++Q
Sbjct: 246  QFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATPVKIVQ 305

Query: 315  SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP 374
            S+ELK+PLCLVNSTLR+PH CH QYM NMGSIASL +A+++  KDS KLWGLVV HH SP
Sbjct: 306  SEELKRPLCLVNSTLRAPHSCHTQYMANMGSIASLALAIVVKGKDSSKLWGLVVGHHCSP 365

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            RY+PFPLRYACEFL+QAF LQL MELQ+  QLAEK  +RTQ LLCDMLLRD   +IVTQS
Sbjct: 366  RYVPFPLRYACEFLMQAFGLQLQMELQLTSQLAEKKAMRTQTLLCDMLLRDTVSAIVTQS 425

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD-CTGLSTDSLAEAGY 493
            P IMDLVKCDGAALYY G+CWLVGVTP+E Q+KD+  WL+ NHGD  TGL+TDSL + GY
Sbjct: 426  PGIMDLVKCDGAALYYKGKCWLVGVTPSELQVKDLVNWLVENHGDDSTGLTTDSLVDVGY 485

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGA   G A+CG+A A I+SKDFL WFRS+TA  +KWGGAKHHP++KD+ G+MHPRSSFK
Sbjct: 486  PGAISFGDAICGVAAAGISSKDFLLWFRSNTASAMKWGGAKHHPKNKDDAGRMHPRSSFK 545

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLEV K+RS PWE+SEI+AIHSL+++MR+SF      +   +  N  +     +  +EL
Sbjct: 546  AFLEVAKSRSLPWEISEIDAIHSLRLIMRESFTS----SRPVLSANVVE-----RDANEL 596

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
            +S  CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL +E+V EES+
Sbjct: 597  TSFVCEMVRVIETATAPIFGVDSSGCINGWNNKTAEMTGLQASEAMGKSLANEIVQEESR 656

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQ---HSVVYILVNACTSRDYKNNVKGVCFV 730
             A+E+L+C+AL GEE+KNV LKLRKF         S V++LVN+CTSRDY   + GVCFV
Sbjct: 657  AALESLMCKALQGEEEKNVMLKLRKFGHNNHPYYSSGVFVLVNSCTSRDYTEKIIGVCFV 716

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
            GQDIT EK + D+FIRLQGDY+ I+QS+NPLIPPIFASDENACCSEWNAAMEK+TGW +H
Sbjct: 717  GQDITSEKEITDRFIRLQGDYKTIVQSLNPLIPPIFASDENACCSEWNAAMEKLTGWSKH 776

Query: 791  EVIG---------------------------ITGQGTENFP----FGFFNRQGQFVEVAL 819
            EVIG                             G  + + P     GFFN++G+++  +L
Sbjct: 777  EVIGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIASHDIPESSLLGFFNKEGKYIVASL 836

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            TA++ T+ EGKVIGCF F+QI+  D    L   GL++      + EL Y++QE+KNPL+G
Sbjct: 837  TANKSTNTEGKVIGCFFFLQIISGD--SGLSCPGLKES--AQSLNELTYMKQEIKNPLSG 892

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNI 939
            IRF HKLLESS ISE QR++LETSDACE+QI TII+G DL+ IEEGN++L++EEF L  I
Sbjct: 893  IRFAHKLLESSEISETQRKFLETSDACEKQITTIIEGTDLKSIEEGNLKLETEEFRLEYI 952

Query: 940  LDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW 999
            LD+++SQVM++L+++N  L  ++ EEIK L L GDR++LQL+L+D L  +V HAP PD W
Sbjct: 953  LDSIISQVMIMLKERNSQLRVEVTEEIKTLPLYGDRVKLQLILADLLCNIVNHAPFPDSW 1012

Query: 1000 VEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRK 1059
            V I + PG +L +D  +++H+QFR+THPG+G+PS ++ DM++ R+ W TP+GLGLKLSRK
Sbjct: 1013 VGINISPGHELARDNGRYIHLQFRMTHPGKGLPSEMVSDMFDTRDGWVTPDGLGLKLSRK 1072

Query: 1060 LLIMMNGRVRYVRENSKCYFVIDLELKT 1087
            LL  MNGRV YVRE+ +C+F++DL++KT
Sbjct: 1073 LLEQMNGRVSYVREDERCFFLVDLQVKT 1100


>gi|240255991|ref|NP_193547.4| phytochrome E [Arabidopsis thaliana]
 gi|332278136|sp|P42498.2|PHYE_ARATH RecName: Full=Phytochrome E
 gi|332658600|gb|AEE84000.1| phytochrome E [Arabidopsis thaliana]
          Length = 1112

 Score = 1469 bits (3804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 709/1106 (64%), Positives = 866/1106 (78%), Gaps = 59/1106 (5%)

Query: 24   SSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAY 83
            S+ + MKP    K+    Y+ DA L A+F QS+ +GKSFNYS+SVISPP  VP+E ITAY
Sbjct: 8    SAASNMKP-QPQKSNTAQYSVDAALFADFAQSIYTGKSFNYSKSVISPPNHVPDEHITAY 66

Query: 84   LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDL-----RSRSEDFE-LNGLIGI 137
            LS IQRGGL+QPFGC++AVEEP+FRI+G S+N  + L L      S S +F+ + GLIGI
Sbjct: 67   LSNIQRGGLVQPFGCLIAVEEPSFRILGLSDNSSDFLGLLSLPSTSHSGEFDKVKGLIGI 126

Query: 138  DARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPS 197
            DARTLFTP SGASL+KAA+  EISLLNP+LVHS  R+ +KPFYAILHRID GIV+DLEP+
Sbjct: 127  DARTLFTPSSGASLSKAASFTEISLLNPVLVHS--RTTQKPFYAILHRIDAGIVMDLEPA 184

Query: 198  KSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFH 257
            KSGDPAL+LAGAVQSQKLAV AISRLQ+LPGGDIG LCDTVVEDVQ+LTGYDRVM+Y FH
Sbjct: 185  KSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDRVMVYQFH 244

Query: 258  DDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKE 317
            +DDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV V+QS+E
Sbjct: 245  EDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATPVKVVQSEE 304

Query: 318  LKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYI 377
            LK+PLCLVNSTLR+PHGCH QYM NMGS+ASL +A+++  KDS KLWGLVV HH SPRY+
Sbjct: 305  LKRPLCLVNSTLRAPHGCHTQYMANMGSVASLALAIVVKGKDSSKLWGLVVGHHCSPRYV 364

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QLAEK  +RTQ LLCDMLLRD   +IVTQSP I
Sbjct: 365  PFPLRYACEFLMQAFGLQLQMELQLASQLAEKKAMRTQTLLCDMLLRDTVSAIVTQSPGI 424

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD-CTGLSTDSLAEAGYPGA 496
            MDLVKCDGAALYY G+CWLVGVTP ESQ+KD+  WL+ NHGD  TGL+TDSL +AGYPGA
Sbjct: 425  MDLVKCDGAALYYKGKCWLVGVTPNESQVKDLVNWLVENHGDDSTGLTTDSLVDAGYPGA 484

Query: 497  ALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFL 556
              LG AVCG+A A  +SKD+L WFRS+TA  +KWGGAKHHP+ KD+ G+MHPRSSF AFL
Sbjct: 485  ISLGDAVCGVAAAGFSSKDYLLWFRSNTASAIKWGGAKHHPKDKDDAGRMHPRSSFTAFL 544

Query: 557  EVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSV 616
            EV K+RS PWE+SEI+AIHSL+++MR+SF      +   + GN        +  +EL+S 
Sbjct: 545  EVAKSRSLPWEISEIDAIHSLRLIMRESFTS----SRPVLSGN-----GVARDANELTSF 595

Query: 617  ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
             CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL DE+V EES+ A+
Sbjct: 596  VCEMVRVIETATAPIFGVDSSGCINGWNKKTAEMTGLLASEAMGKSLADEIVQEESRAAL 655

Query: 677  ENLICRALLGEEDKNVELKLRKFELQKQH----SVVYILVNACTSRDYKNNVKGVCFVGQ 732
            E+L+C+AL GEE+K+V LKLRKF  Q  H    S V +LVN+CTSRDY  N+ GVCFVGQ
Sbjct: 656  ESLLCKALQGEEEKSVMLKLRKFG-QNNHPDYSSDVCVLVNSCTSRDYTENIIGVCFVGQ 714

Query: 733  DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV 792
            DIT EK + D+FIRLQGDY+ I+QS+NPLIPPIFASDENACCSEWNAAMEK+TGW +HEV
Sbjct: 715  DITSEKAITDRFIRLQGDYKTIVQSLNPLIPPIFASDENACCSEWNAAMEKLTGWSKHEV 774

Query: 793  IG---------------------------ITGQGTENFP----FGFFNRQGQFVEVALTA 821
            IG                             G   +N P      FFN++G+++E +LTA
Sbjct: 775  IGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIAGDNVPESSLVEFFNKEGKYIEASLTA 834

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++ T+ EGKVI CF F+QI+  + +  L    L++      + EL Y+RQE+KNPLNGIR
Sbjct: 835  NKSTNIEGKVIRCFFFLQII--NKESGLSCPELKES--AQSLNELTYVRQEIKNPLNGIR 890

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F HKLLESS IS +QRQ+LETSDACE+QI TII+  DL+ IEEG ++L++EEF L NILD
Sbjct: 891  FAHKLLESSEISASQRQFLETSDACEKQITTIIESTDLKSIEEGKLQLETEEFRLENILD 950

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
             ++SQVM++LR++N  L  ++ EEIK L LNGDR++LQL+L+D L  +V HAP P+ WV 
Sbjct: 951  TIISQVMIILRERNSQLRVEVAEEIKTLPLNGDRVKLQLILADLLRNIVNHAPFPNSWVG 1010

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            I + PG +L +D  +++H+QFR+ HPG+G+PS ++ DM+  R+ W TP+GLGLKLSRKLL
Sbjct: 1011 ISISPGQELSRDNGRYIHLQFRMIHPGKGLPSEMLSDMFETRDGWVTPDGLGLKLSRKLL 1070

Query: 1062 IMMNGRVRYVRENSKCYFVIDLELKT 1087
              MNGRV YVRE+ +C+F +DL++KT
Sbjct: 1071 EQMNGRVSYVREDERCFFQVDLQVKT 1096


>gi|226234971|dbj|BAH47475.1| phytochrome E [Cardamine nipponica]
          Length = 1116

 Score = 1468 bits (3801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 706/1108 (63%), Positives = 872/1108 (78%), Gaps = 59/1108 (5%)

Query: 24   SSDAKMKPVNKGK---TIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQI 80
            S+ + MKP+   K   +    Y+ DAGL A+F+QSV SGKSFNYS+SVISP   V +E I
Sbjct: 8    SAASNMKPLGDSKPQKSNTAQYSVDAGLFADFDQSVYSGKSFNYSKSVISPHNHVSDEHI 67

Query: 81   TAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLE---MLDLRSRSEDFELN---GL 134
            TAYLS IQRGGL+QPFGC++AVEEP+FRI+G SENC+E   +L L S S+  E N   GL
Sbjct: 68   TAYLSNIQRGGLVQPFGCLIAVEEPSFRILGVSENCIEFLGLLSLDSTSQCAEFNNVKGL 127

Query: 135  IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
            IGIDARTLF+P SGASL+KAA+  EISLLNP+LVHS  ++ +KPFYAILHRID GIVIDL
Sbjct: 128  IGIDARTLFSPSSGASLSKAASFTEISLLNPVLVHS--KTTQKPFYAILHRIDAGIVIDL 185

Query: 195  EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
            E +KSGDPAL+LAGAVQSQKLAV AISRLQ+LPGGDIG LCDTVVEDVQ+LTGYDRVM+Y
Sbjct: 186  EAAKSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDRVMVY 245

Query: 255  NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
             FH+DDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV V+Q
Sbjct: 246  QFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATPVKVVQ 305

Query: 315  SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP 374
            S+ELK+PLCLVNSTLR+PH CH QYM NMGSIASL +A+++  KDS KLWGLVV HH SP
Sbjct: 306  SEELKRPLCLVNSTLRAPHSCHTQYMANMGSIASLALAIVVKGKDSSKLWGLVVGHHCSP 365

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            RY+PFPLRYACEFL+QAF LQL MELQ+  QLAEK  +RTQ LLCDMLLRD   +IVTQS
Sbjct: 366  RYVPFPLRYACEFLMQAFGLQLQMELQLTSQLAEKKAMRTQTLLCDMLLRDTVSAIVTQS 425

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD-CTGLSTDSLAEAGY 493
            P IMDLVKCDGAALYY G+CWLVGVTP+E Q+KD+  WL+ NHGD  TGL+TDSL +AGY
Sbjct: 426  PGIMDLVKCDGAALYYKGKCWLVGVTPSELQVKDLVNWLVENHGDDSTGLTTDSLVDAGY 485

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGA   G A+CG+A A I+SKD+L WFRS+TA  +KWGGAKHHP++KD+ G+MHPRSSFK
Sbjct: 486  PGAISFGDAICGVAAAGISSKDYLLWFRSNTASAMKWGGAKHHPKNKDDAGRMHPRSSFK 545

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLE+ K+RS PWE+SEI+AIHSL+++MR+SF      +   +  N  +     +  +EL
Sbjct: 546  AFLEIAKSRSLPWEISEIDAIHSLRLIMRESFTS----SRPVLSANVVE-----RDANEL 596

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
            +S  CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL +E+V EES+
Sbjct: 597  TSFVCEMVRVIETATAPIFGVDSSGCINGWNNKTAEMTGLQASEAMGKSLANEIVQEESR 656

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQ---HSVVYILVNACTSRDYKNNVKGVCFV 730
             A+E+L+C+AL GEE+KNV LKLRKF         S V +LVN+CTSRDY   + GVCFV
Sbjct: 657  AALESLMCKALQGEEEKNVMLKLRKFGHNNHPDYSSGVCVLVNSCTSRDYTEKIIGVCFV 716

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
            GQDIT EK + D+FIRLQGDY+ I+QS+NPLIPPIFASDE+ACCSEWNAAMEK+TGW +H
Sbjct: 717  GQDITSEKEITDRFIRLQGDYKTIVQSLNPLIPPIFASDEHACCSEWNAAMEKLTGWSKH 776

Query: 791  EVIG---------------------------ITGQGTENFP----FGFFNRQGQFVEVAL 819
            EVIG                             G  + + P     GFFN++G+++E +L
Sbjct: 777  EVIGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIASHDIPESSLVGFFNKEGKYIEASL 836

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            TA++ T+ EGKVIGCF F+QI+  D    L   GL++      + EL+Y++QE+KNPL+G
Sbjct: 837  TANKSTNTEGKVIGCFFFLQIISGD--SGLSCPGLKES--AQSLNELSYMKQEIKNPLSG 892

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNI 939
            IRF HKLLESS ISE QR++LETSDACE+QI TII+G DL+ IEEGN++L++EEF L +I
Sbjct: 893  IRFAHKLLESSEISETQRKFLETSDACEKQITTIIEGTDLKSIEEGNLKLETEEFRLEDI 952

Query: 940  LDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW 999
            LD+++SQVM++L+++N  L  ++ EEIK L L GDR++LQL+L+D L  +V HAP PD W
Sbjct: 953  LDSIISQVMIMLKERNSQLRVEVTEEIKTLPLYGDRVKLQLILADLLCNIVNHAPFPDSW 1012

Query: 1000 VEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRK 1059
            V I + PG +L +D  +++H+QFR+THPG+G+PS ++ DM++ R  W TP+GLGLKLSRK
Sbjct: 1013 VGINISPGHELARDNGRYIHLQFRMTHPGKGLPSEMVSDMFDTREGWVTPDGLGLKLSRK 1072

Query: 1060 LLIMMNGRVRYVRENSKCYFVIDLELKT 1087
            LL  MNGRV YVRE+ +C+F++DL++KT
Sbjct: 1073 LLEQMNGRVSYVREDERCFFLVDLQVKT 1100


>gi|226235029|dbj|BAH47480.1| phytochrome E [Cardamine nipponica]
          Length = 1116

 Score = 1468 bits (3800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 705/1108 (63%), Positives = 871/1108 (78%), Gaps = 59/1108 (5%)

Query: 24   SSDAKMKPVNKGK---TIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQI 80
            S+ + MKP+   K   +    Y+ DAGL A+F+QSV SGKSFNYS+SVISP   V +E I
Sbjct: 8    SAASNMKPLGDSKPQKSNTAQYSVDAGLFADFDQSVYSGKSFNYSKSVISPHNHVSDEHI 67

Query: 81   TAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLE---MLDLRSRSEDFELN---GL 134
            TAYLS IQRGGL+QPFGC++AVEEP+FRI+G SENC+E   +L L S S+  E N   GL
Sbjct: 68   TAYLSNIQRGGLVQPFGCLIAVEEPSFRILGVSENCIEFLGLLSLDSTSQCAEFNNVKGL 127

Query: 135  IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
            IGIDARTLF+P SGASL+KAA+  EISLLNP+LVHS  ++ +KPFYAILHRID GIVIDL
Sbjct: 128  IGIDARTLFSPSSGASLSKAASFTEISLLNPVLVHS--KTTQKPFYAILHRIDAGIVIDL 185

Query: 195  EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
            E +KSGDPAL+LAGAVQSQKLAV AISRLQ+LPGGDIG LCDTVVEDVQ+LTGYDRVM+Y
Sbjct: 186  EAAKSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDRVMVY 245

Query: 255  NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
             FH+DDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV V+Q
Sbjct: 246  QFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATPVKVVQ 305

Query: 315  SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP 374
            S+ELK+PLCLVNSTLR+PH CH QYM NMGSIASL +A+++  KDS KLWGLVV HH SP
Sbjct: 306  SEELKRPLCLVNSTLRAPHSCHTQYMANMGSIASLALAIVVKGKDSSKLWGLVVGHHCSP 365

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            RY+PFPLRYACEFL+QAF LQL MELQ+  QLAEK  +RTQ LLCDMLLRD   +IVTQS
Sbjct: 366  RYVPFPLRYACEFLMQAFGLQLQMELQLTSQLAEKKAMRTQTLLCDMLLRDTVSAIVTQS 425

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD-CTGLSTDSLAEAGY 493
            P IMDLVKCDGAALYY G+CWLVGVTP+E Q+KD+  WL+ NHGD  TGL+TDSL +AGY
Sbjct: 426  PGIMDLVKCDGAALYYKGKCWLVGVTPSELQVKDLVNWLVENHGDDSTGLTTDSLVDAGY 485

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGA   G A+CG+A A I+SKD+L WFRS+TA  +KWGGAKHHP++KD+ G+MHPRSSFK
Sbjct: 486  PGAISFGDAICGVAAAGISSKDYLLWFRSNTASAMKWGGAKHHPKNKDDAGRMHPRSSFK 545

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLE+ K+RS PWE+SEI+AIHSL+++MR+SF      +   +  N  +     +  +EL
Sbjct: 546  AFLEIAKSRSLPWEISEIDAIHSLRLIMRESFTS----SRPVLSANVVE-----RDANEL 596

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
            +S  CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL +E+V EES+
Sbjct: 597  TSFVCEMVRVIETATAPIFGVDSSGCINGWNNKTAEMTGLQASEAMGKSLANEIVQEESR 656

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQ---HSVVYILVNACTSRDYKNNVKGVCFV 730
             A+E+L+C+AL GEE+KNV LKLRKF         S V +LVN+CTSRDY   + GVCFV
Sbjct: 657  AALESLMCKALQGEEEKNVMLKLRKFGHNNHPDYSSGVCVLVNSCTSRDYTEKIIGVCFV 716

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
            GQDIT EK + D+F+RLQGDY+ I+QS+NPLIPPIFASDE+ACCSEWNAAMEK+TGW +H
Sbjct: 717  GQDITSEKEITDRFMRLQGDYKTIVQSLNPLIPPIFASDEHACCSEWNAAMEKLTGWSKH 776

Query: 791  EVIG---------------------------ITGQGTENFP----FGFFNRQGQFVEVAL 819
            EVIG                             G  + + P     GFFN++G+++E +L
Sbjct: 777  EVIGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIASHDIPESSLVGFFNKEGKYIEASL 836

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            TA++ T+ EGKVIGCF F+QI+  D    L   GL++      + EL Y++QE+KNPL+G
Sbjct: 837  TANKSTNTEGKVIGCFFFLQIISGD--SGLSCPGLKES--AQSLNELTYMKQEIKNPLSG 892

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNI 939
            IRF HKLLESS ISE QR++LETSDACE+QI TII+G DL+ IEEGN++L++EEF L +I
Sbjct: 893  IRFAHKLLESSEISETQRKFLETSDACEKQITTIIEGTDLKSIEEGNLKLETEEFRLEDI 952

Query: 940  LDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW 999
            LD+++SQVM++L+++N  L  ++ EEIK L L GDR++LQL+L+D L  +V HAP PD W
Sbjct: 953  LDSIISQVMIMLKERNSQLRVEVTEEIKTLPLYGDRVKLQLILADLLCNIVNHAPFPDSW 1012

Query: 1000 VEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRK 1059
            V I + PG +L +D  +++H+QFR+THPG+G+PS ++ DM++ R  W TP+GLGLKLSRK
Sbjct: 1013 VGINISPGHELARDNGRYIHLQFRMTHPGKGLPSEMVSDMFDTREGWVTPDGLGLKLSRK 1072

Query: 1060 LLIMMNGRVRYVRENSKCYFVIDLELKT 1087
            LL  MNGRV YVRE+ +C+F++DL++KT
Sbjct: 1073 LLEQMNGRVSYVREDERCFFLVDLQVKT 1100


>gi|226234973|dbj|BAH47476.1| phytochrome E [Cardamine nipponica]
          Length = 1116

 Score = 1467 bits (3799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 704/1108 (63%), Positives = 871/1108 (78%), Gaps = 59/1108 (5%)

Query: 24   SSDAKMKPVNKGK---TIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQI 80
            S+ + MKP+   K   +    Y+ DAGL A+F+QSV SGKSFNYS+SVISP   V +E I
Sbjct: 8    SAASNMKPLGDSKPQKSNTAQYSVDAGLFADFDQSVYSGKSFNYSKSVISPHNHVSDEHI 67

Query: 81   TAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML-----DLRSRSEDFE-LNGL 134
            TAYLS IQRGGL+QPFGC++AVEEP+FRI+G SENC+E L     D  S+  +F+ + GL
Sbjct: 68   TAYLSNIQRGGLVQPFGCLIAVEEPSFRILGVSENCIEFLGLLSLDSTSQCAEFDNVKGL 127

Query: 135  IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
            IGIDARTLF+P SGASL+KAA+  EISLLNP+LVHS  ++ +KPFYAILHRID GIVIDL
Sbjct: 128  IGIDARTLFSPSSGASLSKAASFTEISLLNPVLVHS--KTTQKPFYAILHRIDAGIVIDL 185

Query: 195  EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
            E +KSGDPAL+LAGAVQSQKLAV AISRLQ+LPGGDIG LCDTVVEDVQ+LTGYDRVM+Y
Sbjct: 186  EAAKSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDRVMVY 245

Query: 255  NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
             FH+DDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV V+Q
Sbjct: 246  QFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATPVKVVQ 305

Query: 315  SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP 374
            S+ELK+PLCLVNSTLR+PH CH QYM NMGSIASL +A+++  KDS KLWGLVV HH SP
Sbjct: 306  SEELKRPLCLVNSTLRAPHSCHTQYMANMGSIASLALAIVVKGKDSSKLWGLVVGHHCSP 365

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            RY+PFPLRYACEFL+QAF LQL MELQ+  QLAEK  +RTQ LLCDMLLRD   +IVTQS
Sbjct: 366  RYVPFPLRYACEFLMQAFGLQLQMELQLTSQLAEKKAMRTQTLLCDMLLRDTVSAIVTQS 425

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD-CTGLSTDSLAEAGY 493
            P IMDLVKCDGAALYY G+CWLVGVTP+E Q+KD+  WL+ NHGD  TGL+TDSL +AGY
Sbjct: 426  PGIMDLVKCDGAALYYKGKCWLVGVTPSELQVKDLVNWLVENHGDDSTGLTTDSLVDAGY 485

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGA   G A+CG+A A I+SKD+L WFRS+TA  +KWGGAKHHP++KD+ G+MHPRSSFK
Sbjct: 486  PGAISFGDAICGVAAAGISSKDYLLWFRSNTASAMKWGGAKHHPKNKDDAGRMHPRSSFK 545

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLE+ K+RS PWE+SEI+AIHSL+++MR+SF      +   +  N  +     +  +EL
Sbjct: 546  AFLEIAKSRSLPWEISEIDAIHSLRLIMRESFTS----SRPVLSANVVE-----RDANEL 596

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
            +S  CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL +E+V EES+
Sbjct: 597  TSFVCEMVRVIETATAPIFGVDSSGCINGWNNKTAEMTGLQASEAMGKSLANEIVQEESR 656

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQ---HSVVYILVNACTSRDYKNNVKGVCFV 730
             A+E+L+C+AL GEE+KNV LKLRKF         S V +LVN+CTSRDY   + GVCFV
Sbjct: 657  AALESLMCKALQGEEEKNVMLKLRKFGHNNHPDYSSGVCVLVNSCTSRDYTEKIIGVCFV 716

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
            GQDIT EK + D+FIRLQGDY+ I+QS+NPLIPPIFASDE+ACCSEWNAAMEK+TGW +H
Sbjct: 717  GQDITSEKEITDRFIRLQGDYKTIVQSLNPLIPPIFASDEHACCSEWNAAMEKLTGWSKH 776

Query: 791  EVIG---------------------------ITGQGTENFP----FGFFNRQGQFVEVAL 819
            EVIG                             G  + + P     GFFN++G+++E +L
Sbjct: 777  EVIGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIASHDIPESSLVGFFNKEGKYIEASL 836

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            TA++ T+ EGKVIGCF F+QI+  D    L   GL++      + EL Y++QE+KNPL+G
Sbjct: 837  TANKSTNTEGKVIGCFFFLQIISGD--SGLSCPGLKES--AQSLNELTYMKQEIKNPLSG 892

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNI 939
            IRF HKLLESS ISE QR++LETSDACE+QI TII+G DL+ IEEGN++L++EEF L +I
Sbjct: 893  IRFAHKLLESSEISETQRKFLETSDACEKQITTIIEGTDLKSIEEGNLKLETEEFRLEDI 952

Query: 940  LDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW 999
            LD+++SQVM++L+++N  L  ++ EEIK L L GDR++LQL+L+D L  +V HAP PD W
Sbjct: 953  LDSIISQVMIMLKERNSQLRVEVTEEIKTLPLYGDRVKLQLILADLLCNIVNHAPFPDSW 1012

Query: 1000 VEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRK 1059
            V I + PG +L +D  +++H+QFR+THPG+G+PS ++ DM++ R  W TP+GLGLKLSRK
Sbjct: 1013 VGINISPGHELARDNGRYIHLQFRMTHPGKGLPSEMVSDMFDTREGWVTPDGLGLKLSRK 1072

Query: 1060 LLIMMNGRVRYVRENSKCYFVIDLELKT 1087
            LL  MNGRV YVRE+ +C+F++DL++KT
Sbjct: 1073 LLEQMNGRVSYVREDERCFFLVDLQVKT 1100


>gi|226234977|dbj|BAH47478.1| phytochrome E [Cardamine nipponica]
 gi|226235027|dbj|BAH47479.1| phytochrome E [Cardamine nipponica]
          Length = 1116

 Score = 1466 bits (3795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 705/1108 (63%), Positives = 870/1108 (78%), Gaps = 59/1108 (5%)

Query: 24   SSDAKMKPVNKGK---TIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQI 80
            S+ + MKP+   K   +    Y+ DAGL A+F+QSV SGKSFNYS+SVISP   V +E I
Sbjct: 8    SAASNMKPLGDSKPQKSNTAQYSVDAGLFADFDQSVYSGKSFNYSKSVISPHNHVSDEHI 67

Query: 81   TAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLE---MLDLRSRSEDFELN---GL 134
            TAYLS IQRGGL+QPFGC++AVEEP+FRI+G SENC+E   +L L S S+  E N   GL
Sbjct: 68   TAYLSNIQRGGLVQPFGCLIAVEEPSFRILGVSENCIEFLGLLSLDSTSQCAEFNNVKGL 127

Query: 135  IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
            IGIDARTLF+P SGASL+KAA+  EISLLNP+LVHS  ++ +KPFYAILHRID GIVIDL
Sbjct: 128  IGIDARTLFSPSSGASLSKAASFTEISLLNPVLVHS--KTTQKPFYAILHRIDAGIVIDL 185

Query: 195  EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
            E +KSGDPAL+LAGAVQSQKLAV AISRLQ+LPGGDIG LCDTVVEDVQ+LTGYDRVM+Y
Sbjct: 186  EAAKSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDRVMVY 245

Query: 255  NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
             FH+DDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A  V V+Q
Sbjct: 246  QFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATSVKVVQ 305

Query: 315  SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP 374
            S+ELK+PLCLVNSTLR+PH CH QYM NMGSIASL +A+++  KDS KLWGLVV HH SP
Sbjct: 306  SEELKRPLCLVNSTLRAPHSCHTQYMANMGSIASLALAIVVKGKDSSKLWGLVVGHHCSP 365

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            RY+PFPLRYACEFL+QAF LQL MELQ+  QLAEK  +RTQ LLCDMLLRD   +IVTQS
Sbjct: 366  RYVPFPLRYACEFLMQAFGLQLQMELQLTSQLAEKKAMRTQTLLCDMLLRDTVSAIVTQS 425

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD-CTGLSTDSLAEAGY 493
            P IMDLVKCDGAALYY G+CWLVGVTP+E Q+KD+  WL+ NHGD  TGL+TDSL +AGY
Sbjct: 426  PGIMDLVKCDGAALYYKGKCWLVGVTPSELQVKDLVNWLVENHGDDSTGLTTDSLVDAGY 485

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGA   G A+CG+A A I+SKD+L WFRS+TA  +KWGGAKHHP++KD+ G+MHPRSSFK
Sbjct: 486  PGAISFGDAICGVAAAGISSKDYLLWFRSNTASAMKWGGAKHHPKNKDDAGRMHPRSSFK 545

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLE+ K+RS PWE+SEI+AIHSL+++MR+SF      +   +  N  +     +  +EL
Sbjct: 546  AFLEIAKSRSLPWEISEIDAIHSLRLIMRESFTS----SRPVLSANVVE-----RDANEL 596

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
            +S  CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL +E+V EES+
Sbjct: 597  TSFVCEMVRVIETATAPIFGVDSSGCINGWNNKTAEMTGLQASEAMGKSLANEIVQEESR 656

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQ---HSVVYILVNACTSRDYKNNVKGVCFV 730
             A+E+L+C+AL GEE+KNV LKLRKF         S V +LVN+CTSRDY   + GVCFV
Sbjct: 657  AALESLMCKALQGEEEKNVMLKLRKFGHNNHPDYSSGVCVLVNSCTSRDYTEKIIGVCFV 716

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
            GQDIT EK + D+FIRLQGDY+ I+QS+NPLIPPIFASDE+ACCSEWNAAMEK+TGW +H
Sbjct: 717  GQDITSEKEITDRFIRLQGDYKTIVQSLNPLIPPIFASDEHACCSEWNAAMEKLTGWSKH 776

Query: 791  EVIG---------------------------ITGQGTENFP----FGFFNRQGQFVEVAL 819
            EVIG                             G  + + P     GFFN++G+++E +L
Sbjct: 777  EVIGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIASHDIPESSLVGFFNKEGKYIEASL 836

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            TA++ T+ EGKVIGCF F+QI+  D    L   GL++      + EL Y++QE+KNPL+G
Sbjct: 837  TANKSTNTEGKVIGCFFFLQIISGD--SGLSCPGLKES--AQSLNELTYMKQEIKNPLSG 892

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNI 939
            IRF HKLLESS ISE QR++LETSDACE+QI TII+G DL+ IEEGN++L++EEF L +I
Sbjct: 893  IRFAHKLLESSEISETQRKFLETSDACEKQITTIIEGTDLKSIEEGNLKLETEEFRLEDI 952

Query: 940  LDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW 999
            LD+++SQVM++L+++N  L  ++ EEIK L L GDR++LQL+L+D L  +V HAP PD W
Sbjct: 953  LDSIISQVMIMLKERNSQLRVEVTEEIKTLPLYGDRVKLQLILADLLCNIVNHAPFPDSW 1012

Query: 1000 VEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRK 1059
            V I + PG +L +D  +++H+QFR+THPG+G+PS ++ DM++ R  W TP+GLGLKLSRK
Sbjct: 1013 VGINISPGHELARDNGRYIHLQFRMTHPGKGLPSEMVSDMFDTREGWVTPDGLGLKLSRK 1072

Query: 1060 LLIMMNGRVRYVRENSKCYFVIDLELKT 1087
            LL  MNGRV YVRE+ +C+F++DL++KT
Sbjct: 1073 LLEQMNGRVSYVREDERCFFLVDLQVKT 1100


>gi|226235031|dbj|BAH47481.1| phytochrome E [Cardamine nipponica]
          Length = 1116

 Score = 1466 bits (3794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 705/1108 (63%), Positives = 871/1108 (78%), Gaps = 59/1108 (5%)

Query: 24   SSDAKMKPVNKGK---TIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQI 80
            S+ + MKP+   K   +    Y+ DAGL A+F+QSV SGKSFNYS+SVISP   V +E I
Sbjct: 8    SAASNMKPLGDSKPQKSNTAQYSVDAGLFADFDQSVYSGKSFNYSKSVISPHNHVSDEHI 67

Query: 81   TAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLE---MLDLRSRSEDFELN---GL 134
            TAYLS IQRGGL+QPFGC++AVEEP+FRI+G SENC+E   +L L S S+  E N   GL
Sbjct: 68   TAYLSNIQRGGLVQPFGCLIAVEEPSFRILGVSENCIEFLGLLSLDSTSQCAEFNNVKGL 127

Query: 135  IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
            IGIDARTLF+P SGASL+KAA+  E SLLNP+LVHS  ++ +KPFYAILHRID GIVIDL
Sbjct: 128  IGIDARTLFSPSSGASLSKAASFTENSLLNPVLVHS--KTTQKPFYAILHRIDAGIVIDL 185

Query: 195  EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
            E +KSGDPAL+LAGAVQSQKLAV AISRLQ+LPGGDIG LCDTVVEDVQ+LTGYDRVM+Y
Sbjct: 186  EAAKSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDRVMVY 245

Query: 255  NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
             FH+DDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV V+Q
Sbjct: 246  QFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATPVKVVQ 305

Query: 315  SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP 374
            S+ELK+PLCLVNSTLR+PH CH QYM NMGSIASL +A+++  KDS KLWGLVV HH SP
Sbjct: 306  SEELKRPLCLVNSTLRAPHSCHTQYMANMGSIASLALAIVVKGKDSSKLWGLVVGHHCSP 365

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            RY+PFPLRYACEFL+QAF LQL MELQ+  QLAEK  +RTQ LLCDMLLRD   +IVTQS
Sbjct: 366  RYVPFPLRYACEFLMQAFGLQLQMELQLTSQLAEKKAMRTQTLLCDMLLRDTVSAIVTQS 425

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD-CTGLSTDSLAEAGY 493
            P IMDLVKCDGAALYY G+CWLVGVTP+E Q+KD+  WL+ NHGD  TGL+TDSL +AGY
Sbjct: 426  PGIMDLVKCDGAALYYKGKCWLVGVTPSELQVKDLVNWLVENHGDDSTGLTTDSLVDAGY 485

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGA   G A+CG+A A I+SKD+L WFRS+TA  +KWGGAKHHP++KD+ G+MHPRSSFK
Sbjct: 486  PGAISFGDAICGVAAAGISSKDYLLWFRSNTASAMKWGGAKHHPKNKDDAGRMHPRSSFK 545

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLE+ K+RS PWE+SEI+AIHSL+++MR+SF      +   +  N  +     +  +EL
Sbjct: 546  AFLEIAKSRSLPWEISEIDAIHSLRLIMRESFTS----SRPVLSANVVE-----RDANEL 596

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
            +S  CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL +E+V EES+
Sbjct: 597  TSFVCEMVRVIETATAPIFGVDSSGCINGWNNKTAEMTGLQASEAMGKSLANEIVQEESR 656

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQ---HSVVYILVNACTSRDYKNNVKGVCFV 730
             A+E+L+C+AL GEE+KNV LKLRKF         S V +LVN+CTSRDY   + GVCFV
Sbjct: 657  AALESLMCKALQGEEEKNVMLKLRKFGHNNHPDYSSGVCVLVNSCTSRDYTEKIIGVCFV 716

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
            GQDIT EK + D+FIRLQGDY+ I+QS+NPLIPPIFASDE+ACCSEWNAAMEK+TGW +H
Sbjct: 717  GQDITSEKEITDRFIRLQGDYKTIVQSLNPLIPPIFASDEHACCSEWNAAMEKLTGWSKH 776

Query: 791  EVIG---------------------------ITGQGTENFP----FGFFNRQGQFVEVAL 819
            EVIG                             G  + + P     GFFN++G+++E +L
Sbjct: 777  EVIGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIASHDIPESSLVGFFNKEGKYIEASL 836

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            TA++ T+ EGKVIGCF F+QI+  D    L   GL++      + EL+Y++QE+KNPL+G
Sbjct: 837  TANKSTNTEGKVIGCFFFLQIISGD--SGLSCPGLKES--AQSLNELSYMKQEIKNPLSG 892

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNI 939
            IRF HKLLESS ISE QR++LETSDACE+QI TII+G DL+ IEEGN++L++EEF L +I
Sbjct: 893  IRFAHKLLESSEISETQRKFLETSDACEKQITTIIEGTDLKSIEEGNLKLETEEFRLEDI 952

Query: 940  LDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW 999
            LD+++SQVM++L+++N  L  ++ EEIK L L GDR++LQL+L+D L  +V HAP PD W
Sbjct: 953  LDSIISQVMIMLKERNSQLRVEVTEEIKTLPLYGDRVKLQLILADLLCNIVNHAPFPDSW 1012

Query: 1000 VEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRK 1059
            V I + PG +L +D  +++H+QFR+THPG+G+PS ++ DM++ R  W TP+GLGLKLSRK
Sbjct: 1013 VGINISPGHELARDNGRYIHLQFRMTHPGKGLPSEMVSDMFDTREGWVTPDGLGLKLSRK 1072

Query: 1060 LLIMMNGRVRYVRENSKCYFVIDLELKT 1087
            LL  MNGRV YVRE+ +C+F++DL++KT
Sbjct: 1073 LLEQMNGRVSYVREDERCFFLVDLQVKT 1100


>gi|297800250|ref|XP_002868009.1| hypothetical protein ARALYDRAFT_914880 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297313845|gb|EFH44268.1| hypothetical protein ARALYDRAFT_914880 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1116

 Score = 1465 bits (3793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 713/1116 (63%), Positives = 865/1116 (77%), Gaps = 75/1116 (6%)

Query: 24   SSDAKMKPVNKGK---TIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQI 80
            S+ + MKP+   K   +    Y+ DA L A+F+QS+ SGKSFNYS+SVISPP  VP+E I
Sbjct: 8    SAASNMKPLGDSKPQKSNTAQYSVDAALFADFDQSIYSGKSFNYSKSVISPPNYVPDEHI 67

Query: 81   TAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDL-----RSRSEDFE-LNGL 134
            TAYLS IQRGGL+QPFGC++AVEEP+FRI+G SEN  E L L      S S +F+ + GL
Sbjct: 68   TAYLSNIQRGGLVQPFGCLIAVEEPSFRILGVSENSSEFLGLLSLASTSHSGEFDKVKGL 127

Query: 135  IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
            IGIDARTLFTP SGASLAKAA+  EISLLNP+LVHS  R+ +KPFYAILHRID GIV+DL
Sbjct: 128  IGIDARTLFTPSSGASLAKAASFTEISLLNPVLVHS--RTTQKPFYAILHRIDAGIVMDL 185

Query: 195  EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
            EP+KSGDPAL+LAGAVQSQKLAV AISRLQ+LPGGDIG  CDTVVEDVQ+LTGYDRVM+Y
Sbjct: 186  EPAKSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGAFCDTVVEDVQRLTGYDRVMVY 245

Query: 255  NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
             FH+DDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV V+Q
Sbjct: 246  QFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATPVKVVQ 305

Query: 315  SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP 374
            S+ELK+PLCLVNSTLR+PHGCH QYM NMGS+ASL +A++I  KDS KLWGLVV HH SP
Sbjct: 306  SEELKRPLCLVNSTLRAPHGCHTQYMANMGSVASLALAIVIKGKDSSKLWGLVVGHHCSP 365

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            RY+PFPLRYACEFL+QAF LQL MELQ+A QLAEK  +RTQ LLCDMLLRD   +IVTQS
Sbjct: 366  RYVPFPLRYACEFLMQAFGLQLQMELQLASQLAEKKAMRTQTLLCDMLLRDTVSAIVTQS 425

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHG-DCTGLSTDSLAEAGY 493
            P IMDLVKCDGAALYY G+CWLVGVTP ESQ+KD+  WL+ NHG D TGL+TDSL +AGY
Sbjct: 426  PGIMDLVKCDGAALYYKGKCWLVGVTPNESQVKDLVNWLVENHGDDSTGLTTDSLVDAGY 485

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGA  LG AVCG+A A I+SKD+L WFRS+TA  +KWGGAKH P+ KD+ G+MHPRSSFK
Sbjct: 486  PGAISLGDAVCGVAAAGISSKDYLLWFRSNTASAIKWGGAKHRPKDKDDAGRMHPRSSFK 545

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLEV K+RS PWE+SEI+AIHSL+++MR+SF          + GN        +  +EL
Sbjct: 546  AFLEVAKSRSLPWEISEIDAIHSLRLIMRESFTSCR----PVLSGN-----DVARDANEL 596

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
            +S  CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL +E+V EES+
Sbjct: 597  TSFVCEMVRVIETATAPIFGVDSSGCINGWNKKTAEMTGLLASEAMGKSLANEIVQEESR 656

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQH----SVVYILVNACTSRDYKNNVKGVCF 729
              +E+L+C+AL GEE+K+V LKLRKF  Q  H    S V +LVN+CTSRDY   + GVCF
Sbjct: 657  AVLESLLCKALQGEEEKSVMLKLRKFG-QNNHPDSSSDVCVLVNSCTSRDYTEKIIGVCF 715

Query: 730  VGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMR 789
            VGQDIT EK + D+FIRLQGDY+ I+QS+NPLIPPIFASDENACCSEWNAAMEK+TGW +
Sbjct: 716  VGQDITSEKAITDRFIRLQGDYKTIVQSLNPLIPPIFASDENACCSEWNAAMEKLTGWSK 775

Query: 790  HEVI------------------------------GITGQG-TENFPFGFFNRQGQFVEVA 818
            HEVI                              GI G   TE+    FF+++G+++E +
Sbjct: 776  HEVIGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIAGDNVTESSLVEFFSKEGRYIEAS 835

Query: 819  LTASRRTDAEGKVIGCFCFMQIL-------VPDLQPALEAQGLEDMDIYAKIKELAYIRQ 871
            LTA++ T+ EGKVI CF F+QI+        P+L+ + ++           + EL YIRQ
Sbjct: 836  LTANKSTNIEGKVIRCFFFLQIINKESGLSCPELKESAQS-----------LNELTYIRQ 884

Query: 872  EVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKS 931
            E+KNPLNGIRF HKLLESS IS +QRQ+LETSDACE+QI TII+G DL+ IEEG ++L++
Sbjct: 885  EIKNPLNGIRFAHKLLESSEISASQRQFLETSDACEKQITTIIEGTDLKSIEEGKLQLET 944

Query: 932  EEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVR 991
            EEF L NILD ++SQVM+LLR+ NL L  ++ EEIK L L GDR++LQL+L+D L  +V 
Sbjct: 945  EEFRLENILDTIISQVMILLREGNLQLRVEVAEEIKTLPLYGDRVKLQLILADLLRNIVN 1004

Query: 992  HAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEG 1051
            HAP P+ WV I +  G +L +D   ++H+QFR+ HPG+G+PS ++ DM+  R+ W TP+G
Sbjct: 1005 HAPFPNSWVAIYISRGQELSRDNSHYIHLQFRMIHPGKGLPSEMLSDMFETRDGWDTPDG 1064

Query: 1052 LGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKT 1087
            LGLKLSRKLL  MNGRV YVRE+ +C+F +DL++KT
Sbjct: 1065 LGLKLSRKLLEQMNGRVSYVREDERCFFQVDLQVKT 1100


>gi|224285845|gb|ACN40636.1| unknown [Picea sitchensis]
          Length = 1132

 Score = 1465 bits (3793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 713/1134 (62%), Positives = 873/1134 (76%), Gaps = 53/1134 (4%)

Query: 3    LQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSF 62
            +  N   T S   G N    + S           T +  YNADA LL  FEQS  SGKSF
Sbjct: 1    MASNSRHTQSQSTGSNN---RRSSINTNTTTNKATAMAQYNADARLLQVFEQSGESGKSF 57

Query: 63   NYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDL 122
            +Y+RS+ S  E VPE+QITAYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +EMLDL
Sbjct: 58   DYTRSIKSTTESVPEQQITAYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAVEMLDL 117

Query: 123  RSRS----EDFELNGL-IGIDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIE 176
              +S    E  +L  L IG D RTLFT  S  SL KAA ++EISL+NPI VH  NSR   
Sbjct: 118  APQSVPSMEQPQLEVLTIGTDVRTLFTAASAHSLEKAAVAQEISLMNPIWVHCKNSR--- 174

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAI+HRIDVG+VID EP K+GD  +S AGAVQSQKLAV AISRLQ+LP GDI LLCD
Sbjct: 175  KPFYAIVHRIDVGMVIDFEPLKTGDAFVSAAGAVQSQKLAVRAISRLQSLPCGDIELLCD 234

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            +VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF Q
Sbjct: 235  SVVENVRELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQ 294

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMICDC A PV VIQS+EL QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN
Sbjct: 295  NRVRMICDCMATPVQVIQSEELMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIIN 354

Query: 357  SKD---------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLA 407
              D         SMKLWGLVVCHHTSPR +PFPLRYACEF++QAF LQL MELQ+A QL 
Sbjct: 355  GNDDEGAGSGRNSMKLWGLVVCHHTSPRAVPFPLRYACEFMMQAFGLQLNMELQLAAQLT 414

Query: 408  EKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLK 467
            EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+K
Sbjct: 415  EKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIK 474

Query: 468  DIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKE 527
            DIA WLL +HGD TGLSTDSLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRSHTAKE
Sbjct: 475  DIADWLLEHHGDSTGLSTDSLADAGYPGAASLGDAVCGMASARITSKDFLFWFRSHTAKE 534

Query: 528  VKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQE 587
            +KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ+
Sbjct: 535  MKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQD 594

Query: 588  MEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
            +++   +K   +++ N  ++QG+DELSSVA EMVRLIETATAPI  VD +G +N WNAKV
Sbjct: 595  IDDSG-TKTMVHSRLNDLRLQGIDELSSVASEMVRLIETATAPILAVDYNGLVNVWNAKV 653

Query: 648  AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
            AELTGLP  EAMG SL+ ++V EES   V+ ++C A+ GEE+KNVE+ LR F  QKQ   
Sbjct: 654  AELTGLPVGEAMGMSLVQDLVFEESVERVKKMLCNAIRGEEEKNVEMILRTFGPQKQKEA 713

Query: 708  VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFA 767
            V+++VNAC+SRD+ NN+ GVCFVGQD+T +KV+MDKFIR+QGDY +I+Q+ NPLIPPIFA
Sbjct: 714  VFLVVNACSSRDFTNNIVGVCFVGQDVTGQKVVMDKFIRIQGDYRSIVQNPNPLIPPIFA 773

Query: 768  SDENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITG 797
            SDE+ACCSEWNAAME VTGW R EVIG                              I G
Sbjct: 774  SDESACCSEWNAAMENVTGWARDEVIGKMLVGEIFGGCCRLKGQDAVTKFTIVLHSAIDG 833

Query: 798  QGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDM 857
               E FPF FF++QG++VE  LTA++RTDA+G++ G FCF+QI   +L+ ALE Q  ++ 
Sbjct: 834  HEIEKFPFAFFDKQGKYVEALLTANKRTDADGRITGSFCFLQIASSELRQALEVQRQQEK 893

Query: 858  DIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGM 917
              +A++KELAYIRQE+KNPL G+ F  KLLE + +S++Q+Q++ETS  CERQ+  +ID M
Sbjct: 894  KCFARLKELAYIRQEIKNPLYGMMFTRKLLEETDLSDDQKQFVETSAVCERQMQKVIDDM 953

Query: 918  DLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIR 977
            DL  +E+G MEL + EF+LG ++DAVVSQ M++LR+K L L+ +IP E+K + L GD++R
Sbjct: 954  DLDSLEDGYMELDTAEFILGTVIDAVVSQGMIILREKGLQLIREIPGEVKTMHLYGDQVR 1013

Query: 978  LQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIE 1037
            LQ +L+DFL   +R  PSP+GWV IKVLP LK +  A   V ++FR+THPG G+P+ L++
Sbjct: 1014 LQQILADFLLNALRFTPSPEGWVAIKVLPTLKQLSGALHVVLLEFRITHPGPGLPAELVQ 1073

Query: 1038 DMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRGRQ 1091
            D+++ R++WTT EG+GL + RKLL +MNG V+YVRE+ KCYF++++EL    R+
Sbjct: 1074 DLFD-RSRWTTQEGVGLSMCRKLLKLMNGDVQYVRESGKCYFLVNVELPLAQRE 1126


>gi|226234975|dbj|BAH47477.1| phytochrome E [Cardamine nipponica]
          Length = 1116

 Score = 1465 bits (3792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 704/1108 (63%), Positives = 869/1108 (78%), Gaps = 59/1108 (5%)

Query: 24   SSDAKMKPVNKGK---TIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQI 80
            S+ + MKP+   K   +    Y+ DAGL A+F+QSV SGKSFNYS+SVISP   V +E I
Sbjct: 8    SAASNMKPLGDSKPQKSNTAQYSVDAGLFADFDQSVYSGKSFNYSKSVISPHNHVSDEHI 67

Query: 81   TAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLE---MLDLRSRSEDFELN---GL 134
            TAYLS IQRGGL+QPFGC++AVEEP+FRI+G SENC+E   +L L S S+  E N   GL
Sbjct: 68   TAYLSNIQRGGLVQPFGCLIAVEEPSFRILGVSENCIEFLGLLSLDSTSQCAEFNNVKGL 127

Query: 135  IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
            IGIDARTLF+P SGASL+KAA+  EISLLNP+LVHS  ++ +KPFYAILHRID GIVIDL
Sbjct: 128  IGIDARTLFSPSSGASLSKAASFTEISLLNPVLVHS--KTTQKPFYAILHRIDAGIVIDL 185

Query: 195  EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
            E +KSGDPAL+LAGAVQSQKLAV AISRLQ+LPGGDIG LCDTVVEDVQ+LTGYDRVM+Y
Sbjct: 186  EAAKSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDRVMVY 245

Query: 255  NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
             FH+DDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A  V V+Q
Sbjct: 246  QFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATSVKVVQ 305

Query: 315  SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP 374
            S+ELK+PLCLVNSTLR+PH CH QYM NMGSIASL +A+++  KDS KLWGLVV HH SP
Sbjct: 306  SEELKRPLCLVNSTLRAPHSCHTQYMANMGSIASLALAIVVKGKDSSKLWGLVVGHHCSP 365

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            RY+PFPLRYACEFL+QAF LQL MELQ+  QLAEK  +RTQ LLCDMLLRD   +IVTQS
Sbjct: 366  RYVPFPLRYACEFLMQAFGLQLQMELQLTSQLAEKKAMRTQTLLCDMLLRDTVSAIVTQS 425

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD-CTGLSTDSLAEAGY 493
            P IMDLVKCDGAALYY G+CWLVGVTP+E Q+KD+  WL+ NHGD  TGL+TDSL +AGY
Sbjct: 426  PGIMDLVKCDGAALYYKGKCWLVGVTPSELQVKDLVNWLVENHGDDSTGLTTDSLVDAGY 485

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGA   G A+CG+A A I+SKD+L WFRS+TA  +KWGGAKHHP++KD+ G+MHPRSSFK
Sbjct: 486  PGAISFGDAICGVAAAGISSKDYLLWFRSNTASAMKWGGAKHHPKNKDDAGRMHPRSSFK 545

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLE+ K+RS PWE+SEI+AIHSL+++MR+SF      +   +  N  +     +  +EL
Sbjct: 546  AFLEIAKSRSLPWEISEIDAIHSLRLIMRESFTS----SRPVLSANVVE-----RDANEL 596

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
            +S  CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL +E+V EES+
Sbjct: 597  TSFVCEMVRVIETATAPIFGVDSSGCINGWNNKTAEMTGLQASEAMGKSLANEIVQEESR 656

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQ---HSVVYILVNACTSRDYKNNVKGVCFV 730
             A+E+L+C+AL GEE+KNV LKLRKF         S V +LVN+CTSRDY   + GVCFV
Sbjct: 657  AALESLMCKALQGEEEKNVMLKLRKFGHNNHPDYSSGVCVLVNSCTSRDYTEKIIGVCFV 716

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
            GQDIT EK + D+FIRLQGDY+ I+QS+NPLIPPIFASDE+ACCSEWNAAMEK+TGW +H
Sbjct: 717  GQDITSEKEITDRFIRLQGDYKTIVQSLNPLIPPIFASDEHACCSEWNAAMEKLTGWSKH 776

Query: 791  EVIG---------------------------ITGQGTENFP----FGFFNRQGQFVEVAL 819
            EVIG                             G  + + P     GFFN++G+++E +L
Sbjct: 777  EVIGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIASHDIPESSLVGFFNKEGKYIEASL 836

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            TA++ T+ EGKVIGCF F+QI+  D    L   GL++      + EL Y++QE+KNPL+G
Sbjct: 837  TANKSTNTEGKVIGCFFFLQIISGD--SGLSCPGLKES--AQSLNELTYMKQEIKNPLSG 892

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNI 939
            IRF HKLLESS ISE QR++LETSDACE+QI TII+G DL+ IEEGN++L++EEF L +I
Sbjct: 893  IRFAHKLLESSEISETQRKFLETSDACEKQITTIIEGTDLKSIEEGNLKLETEEFRLEDI 952

Query: 940  LDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW 999
            LD+++SQVM++L+++N  L  ++ EEIK L   GDR++LQL+L+D L  +V HAP PD W
Sbjct: 953  LDSIISQVMIMLKERNSQLRVEVTEEIKTLPFYGDRVKLQLILADLLCNIVNHAPFPDSW 1012

Query: 1000 VEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRK 1059
            V I + PG +L +D  +++H+QFR+THPG+G+PS ++ DM++ R  W TP+GLGLKLSRK
Sbjct: 1013 VGINISPGHELARDNGRYIHLQFRMTHPGKGLPSEMVSDMFDTREGWVTPDGLGLKLSRK 1072

Query: 1060 LLIMMNGRVRYVRENSKCYFVIDLELKT 1087
            LL  MNGRV YVRE+ +C+F++DL++KT
Sbjct: 1073 LLEQMNGRVSYVREDERCFFLVDLQVKT 1100


>gi|226235033|dbj|BAH47482.1| phytochrome E [Cardamine resedifolia]
          Length = 1116

 Score = 1463 bits (3788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 704/1108 (63%), Positives = 868/1108 (78%), Gaps = 59/1108 (5%)

Query: 24   SSDAKMKPVNKGK---TIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQI 80
            S+ + MKP+   K   +    Y+ DAGL A+F+QSV SGKSFNYS+SVISP   V +E I
Sbjct: 8    SAASNMKPLGDSKPQKSNTAQYSVDAGLFADFDQSVYSGKSFNYSKSVISPHNHVSDEHI 67

Query: 81   TAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLE---MLDLRSRSEDFELN---GL 134
            TAYLS IQRGGL+QPFGC++AVEEP+FRI+G SENC+E   +L L S S+  E N   GL
Sbjct: 68   TAYLSNIQRGGLVQPFGCLIAVEEPSFRILGVSENCIEFLGLLSLDSTSQCAEFNNVKGL 127

Query: 135  IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
            IGIDARTLF+P SGASL+KAA+  EISLLNP+LVHS  ++ +KPFYAILHRID G VIDL
Sbjct: 128  IGIDARTLFSPSSGASLSKAASFTEISLLNPVLVHS--KTTQKPFYAILHRIDAGTVIDL 185

Query: 195  EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
            E +KSGDPAL+LAGAVQSQKLAV AISRLQ+LPGGDIG LCD VVEDVQ+LTGYDRVM+Y
Sbjct: 186  EAAKSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDAVVEDVQRLTGYDRVMVY 245

Query: 255  NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
             FH+DDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV V+Q
Sbjct: 246  QFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATPVKVVQ 305

Query: 315  SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP 374
            S+ELK+PLCLVNSTLR+PH CH QYM NMGSIASL +A+++  KDS KLWGLVV HH SP
Sbjct: 306  SEELKRPLCLVNSTLRAPHSCHTQYMANMGSIASLALAIVVKGKDSSKLWGLVVGHHCSP 365

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            RY+PFPLRYACEFL+QAF LQL MELQ+  QLAEK  +RTQ LLCDMLLRD   +IVTQS
Sbjct: 366  RYVPFPLRYACEFLMQAFGLQLQMELQLTSQLAEKKAMRTQTLLCDMLLRDTVSAIVTQS 425

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD-CTGLSTDSLAEAGY 493
            P IMDLVKCDGAALYY G+CWLVGVTP+E Q+KD+  WL+ NHGD  TGL+TDSL +AGY
Sbjct: 426  PGIMDLVKCDGAALYYKGKCWLVGVTPSELQVKDLVNWLVENHGDDSTGLTTDSLVDAGY 485

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGA   G A+CG+A A I+SKD+L WFRS+TA  +KWGGAKHHP++KD+ G+MHPRSSFK
Sbjct: 486  PGAISFGDAICGVAAAGISSKDYLLWFRSNTASAMKWGGAKHHPKNKDDAGRMHPRSSFK 545

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLEV K+RS PWE+SEI+AIHSL+++MR+SF      +   +  N  +     +  +EL
Sbjct: 546  AFLEVAKSRSLPWEISEIDAIHSLRLIMRESFTS----SRPVLSANVVE-----RDANEL 596

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
            +S  CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL +E+V EES+
Sbjct: 597  TSFVCEMVRVIETATAPIFGVDSSGCINGWNNKTAEMTGLQASEAMGKSLANEIVQEESR 656

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQ---HSVVYILVNACTSRDYKNNVKGVCFV 730
             A+E+ +C+AL GEE+KNV LKLRKF         S V +LVN+CTSRDY   + GVCFV
Sbjct: 657  AALESFMCKALQGEEEKNVMLKLRKFGHNNHPDYSSGVCVLVNSCTSRDYTEKIIGVCFV 716

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
            GQDIT EK + D+FIRLQGDY+ I+QS+NPLIPPIFASDE+ACCSEWNAAMEK+TGW +H
Sbjct: 717  GQDITSEKEITDRFIRLQGDYKTIVQSLNPLIPPIFASDEHACCSEWNAAMEKLTGWSKH 776

Query: 791  EVIG---------------------------ITGQGTENFP----FGFFNRQGQFVEVAL 819
            EVIG                             G  + + P     GFFN++G+++E +L
Sbjct: 777  EVIGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIASHDIPESSLVGFFNKEGKYIEASL 836

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            TA++ T+ EGKVIGCF F+QI+  D    L   GL++      +  L YI+QE+KNPL+G
Sbjct: 837  TANKSTNTEGKVIGCFFFLQIISGD--SGLSCPGLKES--AQSLNGLTYIKQEIKNPLSG 892

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNI 939
            IRF HKLLESS ISE QR++LE+SDACE+QI TII+G DL+ IEEGN++L++EEF L NI
Sbjct: 893  IRFAHKLLESSEISETQRKFLESSDACEKQITTIIEGTDLKSIEEGNLKLETEEFRLENI 952

Query: 940  LDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW 999
            LD+++SQVM++L+++N  L  ++ EEIK L L GDR++LQL+L+D L  +V HAP PD W
Sbjct: 953  LDSIISQVMIMLKERNSQLRVEVTEEIKTLPLYGDRVKLQLILADLLCNIVNHAPFPDSW 1012

Query: 1000 VEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRK 1059
            V I + PG +L +D  +++H+QFR+THPG+G+PS ++ DM++ R+ W TP+GLGLKLSRK
Sbjct: 1013 VGINISPGHELARDNGRYIHLQFRMTHPGKGLPSEMVSDMFDTRDGWVTPDGLGLKLSRK 1072

Query: 1060 LLIMMNGRVRYVRENSKCYFVIDLELKT 1087
            LL  MNGRV YVRE+ +C+F++DL++KT
Sbjct: 1073 LLEQMNGRVSYVREDERCFFLVDLQVKT 1100


>gi|357450589|ref|XP_003595571.1| Phytochrome E [Medicago truncatula]
 gi|87241383|gb|ABD33241.1| Bacteriophytochrome [Medicago truncatula]
 gi|355484619|gb|AES65822.1| Phytochrome E [Medicago truncatula]
          Length = 1122

 Score = 1461 bits (3783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 685/1100 (62%), Positives = 866/1100 (78%), Gaps = 38/1100 (3%)

Query: 24   SSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAY 83
            S+++KM    + +  +  Y  DA LLAEFEQS   GKSF YS++++ PP  V EE++  Y
Sbjct: 17   SAESKMNTNKETEKTLAQYGVDAELLAEFEQSRVYGKSFEYSKTILDPPRLVSEEKMITY 76

Query: 84   LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML-DLRSRSEDFELNGLIGIDARTL 142
            LS+IQRGG IQPFGC++ +EE TFRIIGYSENC ++L D+ S        GLIG+DA TL
Sbjct: 77   LSRIQRGGFIQPFGCLVVIEESTFRIIGYSENCFQLLGDIGSE----HFMGLIGVDATTL 132

Query: 143  FTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDP 202
            FTPPSG+SL KA ASREIS LNPI V   +R+ EKPFYAILHRIDVG++IDLEP++S  P
Sbjct: 133  FTPPSGSSLVKAVASREISRLNPIWV--RARTTEKPFYAILHRIDVGVLIDLEPARSSGP 190

Query: 203  ALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHG 262
            ALSL+G+ QSQK+AVSAISRLQ+    DI LLCDTVVE+VQKLTGY+RVM+Y FH+DDHG
Sbjct: 191  ALSLSGSFQSQKMAVSAISRLQSCRREDISLLCDTVVEEVQKLTGYERVMIYKFHEDDHG 250

Query: 263  EVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPL 322
            EVVSE RRSDLE YLG+H+P+ DIPQAARFLFKQNRVR+I DCHA PV VIQS+ELK+PL
Sbjct: 251  EVVSETRRSDLESYLGLHYPSIDIPQAARFLFKQNRVRLIYDCHAKPVKVIQSRELKKPL 310

Query: 323  CLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLR 382
            CLVNSTLRSPH CH QYM NMGSIASLVMAV+IN KD+ +LWGL+VCHHTSP ++ FP+R
Sbjct: 311  CLVNSTLRSPHDCHKQYMANMGSIASLVMAVVINEKDTTRLWGLLVCHHTSPHHVSFPVR 370

Query: 383  YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
            +ACEF++  F +QLYME+Q+A Q+ EK IL+TQ +LCDMLLRDAPF IVTQSPSIMDLVK
Sbjct: 371  HACEFVMHTFGMQLYMEIQLASQMEEKRILKTQTMLCDMLLRDAPFGIVTQSPSIMDLVK 430

Query: 443  CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
            CDGAALYY   CWL+G+TPT+ Q+KDIA WLL+N+ D TGL+T+SL +AGYPGA LLG A
Sbjct: 431  CDGAALYYDENCWLLGITPTKLQVKDIAEWLLSNYSDSTGLTTESLVDAGYPGATLLGDA 490

Query: 503  VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
            VCGMA+ARI  +  LFWFRSHTAKE++WGGAKHHP  KD+GGKM+PR+SFKAFLEV+K++
Sbjct: 491  VCGMASARINQRHILFWFRSHTAKEIQWGGAKHHPTDKDDGGKMNPRTSFKAFLEVLKSK 550

Query: 563  SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVR 622
            S PWE+SEINAIHSLQ++M+D FQ+  +    K   + +++ + + G  E+SS+A EMVR
Sbjct: 551  SLPWEISEINAIHSLQLIMQDLFQDT-DNTCPKTLKDFEKSDALIGGSHEISSIALEMVR 609

Query: 623  LIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICR 682
            LIETA  PIFGVDS G INGWN K+AELTGLP SEAMGKSL +EVVH +S+  + N++ R
Sbjct: 610  LIETAAVPIFGVDSDGLINGWNVKIAELTGLPTSEAMGKSLENEVVHVDSRETLTNILRR 669

Query: 683  ALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742
            AL G+++KNVELK+ +F L ++  VVY+++++C SRDY N + GV FVGQDIT EKV++ 
Sbjct: 670  ALQGQDNKNVELKINRFVLHQEKEVVYLMISSCISRDYTNAIVGVGFVGQDITFEKVIVK 729

Query: 743  KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI--------- 793
            KFI+L+GDY+AI+ S+NPLIPPIFASDENACCSEWN AME+VTGW + EVI         
Sbjct: 730  KFIKLEGDYKAIMHSLNPLIPPIFASDENACCSEWNVAMERVTGWKKDEVIGKMLLGEIF 789

Query: 794  ---------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVI 832
                                 GI+GQ +E  PFGF++R G+F+E  +T ++RTDA   +I
Sbjct: 790  GSFCRLKGQDALTDFMILLYHGISGQDSEKSPFGFYDRNGKFIETYITTNKRTDASEDII 849

Query: 833  GCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSI 892
            GCFCF+ ++  DL    +    +     +K KELAYI QE+KNPLNGIRF HKLLE++ I
Sbjct: 850  GCFCFLHVVTEDLNQPFQGHRSKCRQRISKSKELAYILQEMKNPLNGIRFTHKLLENTGI 909

Query: 893  SENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLR 952
            SENQ+Q L+TS+ACERQIM II+ +DL  I EG  +L  +EFLLGNILDAVVSQVM+L++
Sbjct: 910  SENQKQLLDTSEACERQIMAIIEDIDLGSINEGTWKLNMKEFLLGNILDAVVSQVMMLIK 969

Query: 953  DKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIK 1012
             K+L + H+I ++I+ LSL GD+IRLQ+VLSD LH +V H PSP+GW+E+K+ PGLK+I+
Sbjct: 970  GKDLQMFHEISDKIQTLSLYGDQIRLQMVLSDILHNIVSHTPSPNGWIEMKITPGLKIIQ 1029

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVR 1072
            D ++F+H++FR+TH G+G+PS ++ DM+ G NQWTT EGLGL +SRK+L  MNG V YVR
Sbjct: 1030 DGNEFIHLKFRMTHSGQGLPSSILHDMFYGENQWTTQEGLGLFMSRKILSRMNGDVHYVR 1089

Query: 1073 ENSKCYFVIDLELKTRGRQK 1092
            E +KCYF+IDLEL+TR  ++
Sbjct: 1090 EQNKCYFLIDLELRTRKERQ 1109


>gi|189409278|gb|ACC60970.1| phytochrome B [Vitis riparia]
          Length = 1129

 Score = 1440 bits (3727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 693/1123 (61%), Positives = 874/1123 (77%), Gaps = 50/1123 (4%)

Query: 5    GNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNY 64
            GNR T +     H      +S+ ++   +     I  Y  DA L A +EQS  SGKSF+Y
Sbjct: 4    GNRGTQSH----HQAQSSGTSNLRVYHTDSMSKAIAQYTMDARLHAVYEQSGESGKSFDY 59

Query: 65   SRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRS 124
            S+SV +  + VPE+QITAYLSKIQRGG IQPFGCMLAV+E TFR+I +SEN  EML L  
Sbjct: 60   SQSVRTTTQSVPEQQITAYLSKIQRGGHIQPFGCMLAVDEATFRVIAFSENAREMLGLTP 119

Query: 125  RS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFY 180
            +S    E  E+  L+G D RTLFTP S   L KA  +REI+LLNP+ +HS +    KPFY
Sbjct: 120  QSVPSLEKPEIL-LVGTDVRTLFTPSSAVLLEKAFGAREITLLNPVWIHSKNSG--KPFY 176

Query: 181  AILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVE 240
            AILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS LQ+LPGGDI LLC+TVVE
Sbjct: 177  AILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDINLLCETVVE 236

Query: 241  DVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVR 300
            +V++LTGYDRVM+Y FH+D+HGEVV+E +RSDLEPY+G+H+PA DIPQA+RFLF+QNRVR
Sbjct: 237  NVRELTGYDRVMVYKFHEDEHGEVVAESKRSDLEPYIGLHYPATDIPQASRFLFRQNRVR 296

Query: 301  MICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS 360
            MI DCHA PV+VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVIIN  D 
Sbjct: 297  MIVDCHATPVLVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGSDE 356

Query: 361  --------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNIL 412
                    M+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL+EK++L
Sbjct: 357  EAIGGRNLMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVL 416

Query: 413  RTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWW 472
            RTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ +  GVTPTE+Q+KDIA W
Sbjct: 417  RTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYLGKYYPTGVTPTEAQIKDIAEW 476

Query: 473  LLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGG 532
            LL NH D TGLSTDSLA+AGYPGAA LG AVCGMA A ITS+DFLFWFRSHTAKE+KWGG
Sbjct: 477  LLANHADSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITSRDFLFWFRSHTAKEIKWGG 536

Query: 533  AKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEN 592
            AKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++  + +
Sbjct: 537  AKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDATDGS 596

Query: 593  DSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTG 652
            +SK   + Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVAELTG
Sbjct: 597  NSKAVMHAQLGELELQGMDELSSVAREMVRLIETATAPIFAVDVDGCINGWNAKVAELTG 656

Query: 653  LPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILV 712
            L   EAMGKSL+ ++V++ES+  V+ L+  AL GEEDKNVE+KLR F+ Q+    V+++V
Sbjct: 657  LSVEEAMGKSLVHDLVYKESEETVDKLLHHALRGEEDKNVEIKLRTFDSQQHKKAVFVVV 716

Query: 713  NACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENA 772
            NAC+SRDY NN+ GVCFVGQD+T +KV+MDKFI +QGDY+AI+ S NPLIPPIFASDEN 
Sbjct: 717  NACSSRDYTNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENT 776

Query: 773  CCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQGTEN 802
             CSEWN AMEK+TGW R ++IG                              I GQ T+ 
Sbjct: 777  VCSEWNTAMEKLTGWSRGDIIGKMLVGEIFGSSCRLKGPDALTKFMIVLHNAIGGQDTDK 836

Query: 803  FPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAK 862
            FPF FF++ G++V+  LTA++R + EG++IG FCF+QI  P+LQ AL+ Q  ++   +A+
Sbjct: 837  FPFSFFDQNGKYVQALLTANKRVNIEGQIIGAFCFLQIASPELQQALKVQRQQEKKCFAR 896

Query: 863  IKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCI 922
            +KELAYI QE+KNPL+GIRF + LLE++ ++E+Q+Q+LETS ACE+Q+  II  +DL  I
Sbjct: 897  MKELAYICQEIKNPLSGIRFTNSLLEATDLTEDQKQFLETSAACEKQMSKIIRDVDLDSI 956

Query: 923  EEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVL 982
            E+G++EL+  EFLLG++++AVVSQVM+LLR+++L L+ DIPEE+K L++ GD++R+Q VL
Sbjct: 957  EDGSLELERAEFLLGSVINAVVSQVMILLRERDLQLIRDIPEEVKTLAVYGDQVRIQQVL 1016

Query: 983  SDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNG 1042
            +DFL  +VR+APSPDGW+EI+V P LK I +  + +H++FR+  PGEG+P +LI+DM++ 
Sbjct: 1017 ADFLLNMVRYAPSPDGWIEIQVRPRLKQISEEVKLMHIEFRMVCPGEGLPPNLIQDMFHS 1076

Query: 1043 RNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             ++W T EGLGL + RK+L ++NG V+Y+RE+ +CYF+I +EL
Sbjct: 1077 -SRWMTQEGLGLSMCRKILKLINGEVQYIRESERCYFLISIEL 1118


>gi|189409279|gb|ACC60966.1| phytochrome B [Vitis vinifera]
          Length = 1129

 Score = 1437 bits (3719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 692/1123 (61%), Positives = 873/1123 (77%), Gaps = 50/1123 (4%)

Query: 5    GNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNY 64
            GNR T +     H      +S+ ++   +     I  Y  DA L A +EQS  SGKSF+Y
Sbjct: 4    GNRGTQSH----HQAQSSGTSNLRVYHTDSMSKAIAQYTMDARLHAVYEQSGESGKSFDY 59

Query: 65   SRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRS 124
            S+SV +  + VPE+QITAYLSKIQRGG IQPFGCMLAV+E TFR+I +SEN  EML L  
Sbjct: 60   SQSVRTTTQSVPEQQITAYLSKIQRGGHIQPFGCMLAVDEATFRVIAFSENAREMLGLTP 119

Query: 125  RS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFY 180
            +S    E  E+  L+G D RTLFTP S   L KA  +REI+LLNP+ +HS +    KPFY
Sbjct: 120  QSVPSLEKPEIL-LVGTDVRTLFTPSSAVLLEKAFRAREITLLNPVWIHSKNSG--KPFY 176

Query: 181  AILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVE 240
            AILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS LQ+LPGGDI LLC+TVVE
Sbjct: 177  AILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDINLLCETVVE 236

Query: 241  DVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVR 300
            +V++LTGYDRVM+Y FH+D+HGEVV+E +RSDLEPY+G+H+PA DIPQA+RFLF+QNRVR
Sbjct: 237  NVRELTGYDRVMVYKFHEDEHGEVVAESKRSDLEPYIGLHYPATDIPQASRFLFRQNRVR 296

Query: 301  MICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS 360
            MI DCHA PV+VIQ + L QPLCLV STLR+PHGCH QYM NMGS ASL MAVIIN  D 
Sbjct: 297  MIVDCHATPVLVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSTASLAMAVIINGSDE 356

Query: 361  --------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNIL 412
                    M+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL+EK++L
Sbjct: 357  EAIGGRNLMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVL 416

Query: 413  RTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWW 472
            RTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ +  GVTPTE+Q+KDIA W
Sbjct: 417  RTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGKYYPTGVTPTEAQIKDIAEW 476

Query: 473  LLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGG 532
            LL NH D TGLSTDSLA+AGYPGAA LG AVCGMA A ITS+DFLFWFRSHTAKE+KWGG
Sbjct: 477  LLANHADSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITSRDFLFWFRSHTAKEIKWGG 536

Query: 533  AKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEN 592
            AKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++  + +
Sbjct: 537  AKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDATDGS 596

Query: 593  DSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTG 652
            +SK   + Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVAELTG
Sbjct: 597  NSKAVMHAQLGELELQGMDELSSVAREMVRLIETATAPIFAVDVDGCINGWNAKVAELTG 656

Query: 653  LPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILV 712
            L   EAMGKSL+ ++V++ES+  V+ L+  AL GEEDKNVE+KLR F+ Q+    V+++V
Sbjct: 657  LSVEEAMGKSLVHDLVYKESEETVDKLLHHALRGEEDKNVEIKLRTFDSQQHKKAVFVVV 716

Query: 713  NACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENA 772
            NAC+SRDY NN+ GVCFVGQD+T +KV+MDKFI +QGDY+AI+ S NPLIPPIFASDEN 
Sbjct: 717  NACSSRDYTNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENT 776

Query: 773  CCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQGTEN 802
             CSEWN AMEK+TGW R ++IG                              I GQ T+ 
Sbjct: 777  VCSEWNTAMEKLTGWSRGDIIGKILVGEIFGSSCRLKGPDALTKFMIVLHNAIGGQDTDK 836

Query: 803  FPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAK 862
            FPF FF++ G++V+  LTA++R + EG++IG FCF+QI  P+LQ AL+ Q  ++   +A+
Sbjct: 837  FPFSFFDQNGKYVQALLTANKRVNIEGQIIGAFCFLQIASPELQQALKVQRQQEKKCFAR 896

Query: 863  IKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCI 922
            +KELAYI QE+KNPL+GIRF + LLE++ ++E+Q+Q+LETS ACE+Q+  II  +DL  I
Sbjct: 897  MKELAYICQEIKNPLSGIRFTNSLLEATDLTEDQKQFLETSAACEKQMSKIIRDVDLDSI 956

Query: 923  EEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVL 982
            E+G++EL+  EFLLG++++AVVSQVM+LLR+++L L+ DIPEE+K L++ GD++R+Q VL
Sbjct: 957  EDGSLELERAEFLLGSVINAVVSQVMILLRERDLQLIRDIPEEVKTLAVYGDQVRIQQVL 1016

Query: 983  SDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNG 1042
            +DFL  +VR+APSPDGW+EI+V P LK I +  + +H++FR+  PGEG+P +LI+DM++ 
Sbjct: 1017 ADFLLNMVRYAPSPDGWIEIQVCPRLKQISEEVKLMHIEFRMVCPGEGLPPNLIQDMFHS 1076

Query: 1043 RNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             ++W T EGLGL + RK+L ++NG V+Y+RE+ +CYF+I +EL
Sbjct: 1077 -SRWMTQEGLGLSMCRKILKLINGEVQYIRESERCYFLISIEL 1118


>gi|225431962|ref|XP_002278263.1| PREDICTED: phytochrome B-like [Vitis vinifera]
          Length = 1129

 Score = 1433 bits (3710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 692/1128 (61%), Positives = 873/1128 (77%), Gaps = 50/1128 (4%)

Query: 5    GNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNY 64
            GNR T +     H      +S+ ++   +     I  Y  DA L A +EQS  SGKSF+Y
Sbjct: 4    GNRGTQSH----HQAQSSGTSNLRVYHTDSMSKAIAQYTMDARLHAVYEQSGESGKSFDY 59

Query: 65   SRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRS 124
            S+SV +  + VPE+QITAYLSKIQRGG IQPFGCMLAV+E TFR+I +SEN  EML L  
Sbjct: 60   SQSVRTTTQSVPEQQITAYLSKIQRGGHIQPFGCMLAVDEATFRVIAFSENAREMLGLTP 119

Query: 125  RS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFY 180
            +S    E  E+  L+G D RTLFTP S   L KA  +REI+LLNP+ +HS +    KPFY
Sbjct: 120  QSVPSLEKPEIL-LVGTDVRTLFTPSSAVLLEKAFGAREITLLNPVWIHSKNSG--KPFY 176

Query: 181  AILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVE 240
            AILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS LQ+LPGGDI LLC+TVVE
Sbjct: 177  AILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDINLLCETVVE 236

Query: 241  DVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVR 300
            +V++LTGYDRVM+Y FH+D+HGEVV+E +RSDLEPY+G+H+PA DIPQA+RFLF+QNRVR
Sbjct: 237  NVRELTGYDRVMVYKFHEDEHGEVVAESKRSDLEPYIGLHYPATDIPQASRFLFRQNRVR 296

Query: 301  MICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS 360
            MI DCHA PV+VIQ + L QPLCLV STLR+PHGCH QYM NMGS ASL MAVIIN  D 
Sbjct: 297  MIVDCHATPVLVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSTASLAMAVIINGNDE 356

Query: 361  --------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNIL 412
                    M+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL+EK++L
Sbjct: 357  EAIGGRNLMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVL 416

Query: 413  RTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWW 472
            RTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALY  G+ +  GVTPTE+Q+KDIA W
Sbjct: 417  RTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYCQGKYYPTGVTPTEAQIKDIAEW 476

Query: 473  LLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGG 532
            LL NH D TGLSTDSLA+AGYPGAA LG AVCGMA A ITS+DFLFWFRSHTAKE+KWGG
Sbjct: 477  LLANHADSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITSRDFLFWFRSHTAKEIKWGG 536

Query: 533  AKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEN 592
            AKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++  + +
Sbjct: 537  AKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDATDGS 596

Query: 593  DSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTG 652
            +SK   + Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVAELTG
Sbjct: 597  NSKAVMHAQLGELELQGMDELSSVAREMVRLIETATAPIFAVDVDGCINGWNAKVAELTG 656

Query: 653  LPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILV 712
            L   EAMGKSL+ ++V++ES+  V+ L+  AL GEEDKNVE+KLR F+ Q+    V+++V
Sbjct: 657  LSVEEAMGKSLVHDLVYKESEETVDKLLHHALQGEEDKNVEIKLRTFDSQQHKKAVFVVV 716

Query: 713  NACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENA 772
            NAC+SRDY NN+ GVCFVGQD+T +KV+MDKFI +QGDY+AI+ S NPLIPPIFASDEN 
Sbjct: 717  NACSSRDYTNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENT 776

Query: 773  CCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQGTEN 802
             CSEWN AMEK+TGW R ++IG                              I GQ T+ 
Sbjct: 777  VCSEWNTAMEKLTGWSRGDIIGKMLVGEIFGSSCRLKGPDALTKFMIVLHNAIGGQDTDK 836

Query: 803  FPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAK 862
            FPF FF++ G++V+  LTA++R + EG++IG FCF+QI  P+LQ AL+ Q  ++   +A+
Sbjct: 837  FPFSFFDQNGKYVQALLTANKRVNIEGQIIGAFCFLQIASPELQQALKVQRQQEKKCFAR 896

Query: 863  IKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCI 922
            +KELAYI QE+KNPL+GIRF + LLE++ ++E+Q+Q+LETS ACE+Q+  II  +DL  I
Sbjct: 897  MKELAYICQEIKNPLSGIRFTNSLLEATDLTEDQKQFLETSAACEKQMSKIIRDVDLDSI 956

Query: 923  EEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVL 982
            E+G++EL+  EFLLG++++AVVSQVM+LLR+++L L+ DIPEE+K L++ GD++R+Q VL
Sbjct: 957  EDGSLELERAEFLLGSVINAVVSQVMILLRERDLQLIRDIPEEVKTLAVYGDQVRIQQVL 1016

Query: 983  SDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNG 1042
            +DFL  +VR+APSPDGW+EI+V P LK I +  + +H++FR+  PGEG+P +LI+DM++ 
Sbjct: 1017 ADFLLNMVRYAPSPDGWIEIQVHPRLKQISEEVKLMHIEFRMVCPGEGLPPNLIQDMFHS 1076

Query: 1043 RNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRGR 1090
             ++W T EGLGL + RK+L ++NG V+Y+RE+ +CYF+I +EL    R
Sbjct: 1077 -SRWMTQEGLGLSMCRKILKLINGEVQYIRESERCYFLISIELPVPRR 1123


>gi|2370331|emb|CAA74992.1| phytochrome B [Nicotiana plumbaginifolia]
          Length = 1135

 Score = 1427 bits (3693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 689/1095 (62%), Positives = 850/1095 (77%), Gaps = 48/1095 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGV-PEEQITAYLSKIQRGGLIQPFG 97
            I  Y ADA L A FEQS  SGKSF+YS+SV +  + V PE+QITAYL+KIQRGG IQPFG
Sbjct: 40   IAQYTADARLHAVFEQSGESGKSFDYSQSVKTTTQSVVPEQQITAYLTKIQRGGHIQPFG 99

Query: 98   CMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAK 153
            CM+AV+E +F +I YSEN  EML L  +S    E  E+   +G D RTLFTP S   L +
Sbjct: 100  CMIAVDEASFGVIAYSENACEMLSLTPQSVPSLERPEIL-TVGTDVRTLFTPSSSVLLER 158

Query: 154  AAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQ 213
            A  +REI+LLNPI +HS +    KPFYAILHR+DVGIVIDLEP+K+ DPALS+AGAVQSQ
Sbjct: 159  AFGAREITLLNPIWIHSKNSG--KPFYAILHRVDVGIVIDLEPAKTEDPALSIAGAVQSQ 216

Query: 214  KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL 273
            KLAV AIS LQ+LPGGD+ +LCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E +R DL
Sbjct: 217  KLAVRAISHLQSLPGGDVKILCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDL 276

Query: 274  EPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPH 333
            EPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV V+Q + L QPLCLV STLR+PH
Sbjct: 277  EPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVRVVQDESLMQPLCLVGSTLRAPH 336

Query: 334  GCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYAC 385
            GCH QYM NMGSIASL +AVIIN  D        SM+LWGLVV HHTS R IPFPLRYAC
Sbjct: 337  GCHAQYMANMGSIASLTLAVIINGNDEEAVGGRSSMRLWGLVVGHHTSARCIPFPLRYAC 396

Query: 386  EFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDG 445
            EFL+QAF LQL MELQ+A QL+EK++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDG
Sbjct: 397  EFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDG 456

Query: 446  AALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCG 505
            AALY  G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAALLG AVCG
Sbjct: 457  AALYCQGKYYPLGVTPTEAQIKDIVEWLLTYHGDSTGLSTDSLADAGYPGAALLGDAVCG 516

Query: 506  MATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFP 565
            MA A ITSKDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS P
Sbjct: 517  MAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLP 576

Query: 566  WEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
            WE +E++AIHSLQ+++RDSF++ E  N   V  + Q    ++QG+DELSSVA EMVRLIE
Sbjct: 577  WENAEMDAIHSLQLILRDSFKDAEASNSMAVV-HAQLGEMELQGIDELSSVAREMVRLIE 635

Query: 626  TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
            TATAPIF VD  G INGWNAKVAELT L   EAMGKSL+ ++VHEESQ   ENL+  AL 
Sbjct: 636  TATAPIFAVDVDGRINGWNAKVAELTDLSVEEAMGKSLVHDLVHEESQETAENLLFNALR 695

Query: 686  GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
            GEEDKNVE+KLR F  ++    V+++VNAC+S+DY NN+ GVCFVGQD+T +KV+MDKFI
Sbjct: 696  GEEDKNVEMKLRTFGSEQPKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFI 755

Query: 746  RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
             +QGDY+AI+ S NPLIPPIF SDEN CCSEWN AME +TGW R E+IG           
Sbjct: 756  HIQGDYKAIVHSPNPLIPPIFVSDENTCCSEWNTAMENLTGWSRGEIIGKMLVGETFGSC 815

Query: 795  -------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCF 835
                               I GQ T+ FPF F +R G++V+  LTA++R + EG++IG F
Sbjct: 816  CRLKGPDAMTKFMIVLHNAIGGQDTDKFPFSFSDRNGKYVQALLTANKRVNMEGQIIGAF 875

Query: 836  CFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISEN 895
            CF+QI  P+LQ AL  Q  +D   Y+++KELAY+ QE+K+PLNGIRF + LLE++ ++E+
Sbjct: 876  CFIQIASPELQQALRVQRQQDKKCYSQMKELAYLCQEIKSPLNGIRFTNSLLEATDLTED 935

Query: 896  QRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKN 955
            Q+QYLETS ACERQ+  II  +DL  IE+G++ L  EEF LG+++DAVVSQVM+LLR+++
Sbjct: 936  QKQYLETSTACERQMSKIIRDVDLENIEDGSLTLDKEEFFLGSVIDAVVSQVMLLLRERS 995

Query: 956  LHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDAD 1015
            + L+ DIPEEIK L+++GD++R+Q VL+DFL  +VR+APSPDGWVEI++ P +K I D  
Sbjct: 996  VQLIRDIPEEIKTLTVHGDQVRIQQVLADFLLNMVRYAPSPDGWVEIQLQPNMKQISDEV 1055

Query: 1016 QFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENS 1075
              VH++FR+  PGEG+P  L++DM++  N+W T EGLGL + RK+L +MNG ++Y+RE+ 
Sbjct: 1056 TVVHIEFRIVCPGEGLPPELVQDMFHS-NRWVTKEGLGLSMCRKILKLMNGEIQYIRESE 1114

Query: 1076 KCYFVIDLELKTRGR 1090
            +CYF+I L+L   GR
Sbjct: 1115 RCYFLIILDLPMTGR 1129


>gi|85679505|gb|ABC72086.1| phytochrome B [Solanum tuberosum]
          Length = 1130

 Score = 1422 bits (3681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 695/1115 (62%), Positives = 854/1115 (76%), Gaps = 53/1115 (4%)

Query: 17   HNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPE 73
            HN++  +SS      VN   +I   I  Y ADA L A FEQS  SGK F+YS SV +  +
Sbjct: 12   HNSSQAQSSGTS--NVNYKDSISKAIAQYTADARLHAVFEQSGESGKFFDYSESVKTTTQ 69

Query: 74   GVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDF 129
             VPE QITAYL+KIQRGG IQPFGCM+AV+E +FR+I YSEN  EML L  +S    E  
Sbjct: 70   SVPERQITAYLTKIQRGGHIQPFGCMIAVDEASFRVIAYSENAFEMLSLTPQSVPSLEKC 129

Query: 130  ELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVG 189
            E+   IG D RTLFTP S   L +A  +REI+LLNPI +HS +    KPFYAILHR+DVG
Sbjct: 130  EIL-TIGTDVRTLFTPSSSVLLERAFGAREITLLNPIWIHSKNSG--KPFYAILHRVDVG 186

Query: 190  IVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYD 249
            I IDLEP+++ DPALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVVE V++LTGYD
Sbjct: 187  IAIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRELTGYD 246

Query: 250  RVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIP 309
            RVM+Y FH+D+HGEVV+E +RSDLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA P
Sbjct: 247  RVMVYKFHEDEHGEVVAESKRSDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATP 306

Query: 310  VMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------S 360
            V V Q + L QPLCLV STLR+PHGCH QYM NMGSIASL +AVIIN  D         S
Sbjct: 307  VRVTQDESLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLTLAVIINGNDEEAVGGGRNS 366

Query: 361  MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCD 420
            M+LWGLVV HHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL+EK++LRTQ LLCD
Sbjct: 367  MRLWGLVVGHHTSVRSIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCD 426

Query: 421  MLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDC 480
            MLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KDI  WLL  HGD 
Sbjct: 427  MLLRDSPPGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVEWLLAYHGDS 486

Query: 481  TGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHK 540
            TGLSTDSLA+AGYPGAA LG AVCGMA A I+SKDFLFWFRSHTAKE+KWGGAKHHPE K
Sbjct: 487  TGLSTDSLADAGYPGAASLGDAVCGMAVAYISSKDFLFWFRSHTAKEIKWGGAKHHPEDK 546

Query: 541  DNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNT 600
            D+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ E  N SK   + 
Sbjct: 547  DDGLRMHPRSSFKAFLEVVKSRSSPWENAEMDAIHSLQLILRDSFKDAEASN-SKAIVHA 605

Query: 601  QQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMG 660
                 ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVAELTGL   EAMG
Sbjct: 606  HLGEMELQGIDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVAELTGLSVEEAMG 665

Query: 661  KSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDY 720
            KSL+ E+V++ESQ   E L+  AL GEEDKNVE+KLR F  ++    V+++VNAC S+DY
Sbjct: 666  KSLVHELVYKESQETAEKLLYNALRGEEDKNVEIKLRTFGAEQLEKAVFVVVNACASKDY 725

Query: 721  KNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAA 780
             NN+ GVCFVGQD+T EKV+MDKFI +QGDY+AI+ S NPLIPPIFASDEN CCSEWN A
Sbjct: 726  TNNIVGVCFVGQDVTGEKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTA 785

Query: 781  MEKVTGWMRHEVIG------------------------------ITGQGTENFPFGFFNR 810
            MEK+TGW R E++G                              I GQ T+ FPF FF+R
Sbjct: 786  MEKLTGWSRGEIVGKMLVGEIFGSCCRLKGPDAMTKFMIVLHNAIGGQDTDKFPFSFFDR 845

Query: 811  QGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIR 870
             G++V+  LTA++R + EG  IG FCF+QI  P+LQ AL  Q  ++   Y+++KELAYI 
Sbjct: 846  NGKYVQALLTANKRVNMEGNTIGAFCFIQIASPELQQALRVQRQQEKKCYSQMKELAYIC 905

Query: 871  QEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELK 930
            QE+K+PLNGIRF + LLE+++++ENQ+QYLETS ACERQ+  II  +DL  IE+G++ L+
Sbjct: 906  QEIKSPLNGIRFTNSLLEATNLTENQKQYLETSAACERQMSKIIRDVDLENIEDGSLTLE 965

Query: 931  SEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVV 990
             E+F LG+++DAVVSQVM+LLR+K + L+ DIPEEIK L+++GD++R+Q VL+DFL  +V
Sbjct: 966  KEDFFLGSVIDAVVSQVMLLLREKGVQLIRDIPEEIKTLTVHGDQVRIQQVLADFLLNMV 1025

Query: 991  RHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPE 1050
            R+APSPDGWVEI++ P +  I D    VH++ R+  PGEG+P  L++DM++  ++W T E
Sbjct: 1026 RYAPSPDGWVEIQLRPSMMPISDGVTGVHIELRIICPGEGLPPELVQDMFHS-SRWVTQE 1084

Query: 1051 GLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            GLGL   RK+L +MNG ++Y+RE+ +CYF+I L+L
Sbjct: 1085 GLGLSTCRKMLKLMNGEIQYIRESERCYFLIVLDL 1119


>gi|2499557|sp|Q41046.1|PHY_PINSY RecName: Full=Phytochrome
 gi|1237084|emb|CAA65510.1| phytochrome [Pinus sylvestris]
          Length = 1131

 Score = 1422 bits (3680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 692/1100 (62%), Positives = 855/1100 (77%), Gaps = 51/1100 (4%)

Query: 37   TIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPF 96
            T +  YN+DA LL  FEQS  SGKSF+Y+RS+      VPE+QITAYLS+IQRGG IQPF
Sbjct: 32   TAMAQYNSDARLLQVFEQSGESGKSFDYTRSIQVHNRAVPEQQITAYLSRIQRGGRIQPF 91

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IGIDARTLFTPPSGASL 151
            GC+LAVEE TFRII YSEN  EMLDL ++S    E  + + L IG D RTLFT  S  SL
Sbjct: 92   GCVLAVEETTFRIIAYSEN-EEMLDLGAQSVPSMEKPQQDVLTIGTDVRTLFTAASAHSL 150

Query: 152  AKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
             KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VIDLEP ++GD  +S AGAV
Sbjct: 151  EKAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDLEPLRTGDAFMSAAGAV 207

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQ+LP GD+GLLCDTVVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 208  QSQKLAVRAISRLQSLPCGDVGLLCDTVVENVRELTGYDRVMVYKFHEDEHGEVVAEIRR 267

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS+EL QPLCLV ST  
Sbjct: 268  SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQSEELMQPLCLVGSTPS 327

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGLVVCHHTSPRYIPFPL 381
            +PHGCH QYM NMGSI SL+MAVIIN  D         SMKLWGLVVCHHTSPR +PFPL
Sbjct: 328  APHGCHAQYMANMGSIRSLLMAVIINGNDDEGGGSGRNSMKLWGLVVCHHTSPRAVPFPL 387

Query: 382  RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
            RYACEFL+QA  LQL MELQ+A QL EK+ILRTQ LLCDMLLRDAP  IVTQSPSI DLV
Sbjct: 388  RYACEFLMQALGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDAPMGIVTQSPSIKDLV 447

Query: 442  KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
            KCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTDSLA+AGYPGAA LG 
Sbjct: 448  KCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTDSLADAGYPGAASLGD 507

Query: 502  AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
            AVCGMA+ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+  +MHPRSSFKAFLEVVK 
Sbjct: 508  AVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDARRMHPRSSFKAFLEVVKR 567

Query: 562  RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMV 621
            RS PW+  EI+AIHSLQ+++R SF+++ +++ +K   +++ N  ++QG+DELSSVA EMV
Sbjct: 568  RSLPWDNVEIDAIHSLQLILRCSFRDI-DDSGTKTMVHSRLNYLRLQGIDELSSVASEMV 626

Query: 622  RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLIC 681
            RLIETATAPI  VD +G +NGWNAKVAELTGLP  EAMG SL+ ++V E+S   VE ++ 
Sbjct: 627  RLIETATAPILAVDYNGLVNGWNAKVAELTGLPVGEAMGMSLVQDLVFEQSVERVEKMLH 686

Query: 682  RALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLM 741
             AL GEE+KNVE+ L+ F  QK+   V ++VNAC+SRD+ +N+ GVCFVGQD+T +KV+M
Sbjct: 687  NALRGEEEKNVEMMLKTFGPQKEKEAVILVVNACSSRDFTDNIVGVCFVGQDVTSQKVVM 746

Query: 742  DKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------- 794
            DKFIR+QGDY +I+QS NPLIPPIFASDE ACCSEWNAAMEKVTGW   EVIG       
Sbjct: 747  DKFIRIQGDYRSIVQSPNPLIPPIFASDEYACCSEWNAAMEKVTGWTHDEVIGKMLVGEI 806

Query: 795  ------------IT-----------GQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKV 831
                        +T           GQ  E FPF FF++QG++VE  LTA++RTDA+G++
Sbjct: 807  FGGCCRLKGQDAVTKFTIVLHQCNHGQEIEKFPFAFFDKQGKYVEALLTANKRTDADGRI 866

Query: 832  IGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSS 891
             G FCF +I   +LQ ALE Q  ++   +A++KELAYIRQE+KNPL G+ F  KLLE + 
Sbjct: 867  TGSFCFFRIASSELQHALEVQRQQEKKCFARLKELAYIRQEIKNPLYGMMFTRKLLEETD 926

Query: 892  ISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLL 951
            +S++Q+Q++ETS  CERQ+  ++D MDL  +E+G MEL + EF+LG ++DAVVSQ M++L
Sbjct: 927  LSDDQKQFVETSAVCERQMQKVMDDMDLESLEDGYMELDTAEFILGTVIDAVVSQGMIVL 986

Query: 952  RDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLI 1011
            R+K L L+ +IP E+K + L GD +++Q +L+DFL  V+R  PSP+GWV IKV P LK +
Sbjct: 987  REKGLQLIREIPGEVKTMRLYGDEVKIQQILADFLLNVLRFTPSPEGWVAIKVFPTLKQL 1046

Query: 1012 KDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYV 1071
                  VH++FR+THPG G+P+ L++D+++ R+QW T EG+GL + RKLL +MNG VRY+
Sbjct: 1047 GGGLHVVHLEFRITHPGLGLPAELVQDLFD-RSQWATQEGVGLSMCRKLLKLMNGDVRYI 1105

Query: 1072 RENSKCYFVIDLELKTRGRQ 1091
            RE+  CYF++++E     R+
Sbjct: 1106 RESGICYFLVNVEFPMAQRE 1125


>gi|33302622|sp|P34094.2|PHYB_SOLTU RecName: Full=Phytochrome B
 gi|2326872|emb|CAA74908.1| phytochrome B [Solanum tuberosum]
          Length = 1130

 Score = 1420 bits (3677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/1090 (63%), Positives = 845/1090 (77%), Gaps = 48/1090 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            I  Y ADA L A FEQS  SGK F+YS+SV +  + VPE QITAYL+KIQRGG IQPFGC
Sbjct: 35   IAQYTADARLHAVFEQSGESGKFFDYSQSVKTTTQSVPERQITAYLTKIQRGGHIQPFGC 94

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
            M+AV+E +FR+I YSEN  EML L  +S    E  E+   IG D RTLFTP S   L +A
Sbjct: 95   MIAVDEASFRVIAYSENACEMLSLTPQSVPSLEKCEIL-TIGTDVRTLFTPSSSVLLERA 153

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
              +REI+LLNPI +HS +    KPFYAILHR+DVGIVIDLEP+++ DPALS+AGAVQSQK
Sbjct: 154  FGAREITLLNPIWIHSKNSG--KPFYAILHRVDVGIVIDLEPARTEDPALSIAGAVQSQK 211

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LAV AIS LQ+LPGGDI LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E +RSDLE
Sbjct: 212  LAVRAISHLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRSDLE 271

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV V Q + L QPLCLV STLR+PHG
Sbjct: 272  PYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVRVTQDESLMQPLCLVGSTLRAPHG 331

Query: 335  CHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGLVVCHHTSPRYIPFPLRYAC 385
            CH QYM NMGSIASL +AVIIN  D         SM+LWGLVV HHTS R IPFPLRYAC
Sbjct: 332  CHAQYMANMGSIASLTLAVIINGNDEEAVGGGRNSMRLWGLVVGHHTSVRSIPFPLRYAC 391

Query: 386  EFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDG 445
            EFL+QAF LQL MELQ+A QL+EK++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDG
Sbjct: 392  EFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPPGIVTQSPSIMDLVKCDG 451

Query: 446  AALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCG 505
            AALYY G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSL +AGYPGAA LG AVCG
Sbjct: 452  AALYYQGKYYPLGVTPTEAQIKDIVEWLLAYHGDSTGLSTDSLPDAGYPGAASLGDAVCG 511

Query: 506  MATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFP 565
            MA A ITSKDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS P
Sbjct: 512  MAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSSP 571

Query: 566  WEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
            WE +E++AIHSLQ+++RDSF++ E  N SK   +      ++QG+DELSSVA EMVRLIE
Sbjct: 572  WENAEMDAIHSLQLILRDSFKDAEASN-SKAIVHAHLGEMELQGIDELSSVAREMVRLIE 630

Query: 626  TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
            TATAPIF VD  G INGWNAKVAELTG+   EAMGKSL+ ++V++ESQ   E L+  AL 
Sbjct: 631  TATAPIFAVDVEGRINGWNAKVAELTGVSVEEAMGKSLVHDLVYKESQETAEKLLYNALR 690

Query: 686  GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
            GEEDKNVE+KLR F  ++    V+++VNAC S+DY NN+ GVCFVGQD+T EKV+MDKFI
Sbjct: 691  GEEDKNVEIKLRTFGAEQLEKAVFVVVNACASKDYTNNIVGVCFVGQDVTGEKVVMDKFI 750

Query: 746  RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
             +QGDY+AI+ S NPLIPPIFASDEN CCSEWN AMEK+TGW R E++G           
Sbjct: 751  NIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEIVGKMLVGEIFGSC 810

Query: 795  -------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCF 835
                               I GQ T+ FPF FF+R G++V+  LTA++R + EG  IG F
Sbjct: 811  CRLKGPDAMTKFMIVLHNAIGGQDTDKFPFSFFDRNGKYVQALLTANKRVNMEGDTIGAF 870

Query: 836  CFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISEN 895
            CF+QI  P+LQ AL  Q  ++   Y+++KELAYI QE+K+PLNGIRF + LLE+++++EN
Sbjct: 871  CFIQIASPELQQALRVQRQQEKKCYSQMKELAYICQEIKSPLNGIRFTNSLLEATNLTEN 930

Query: 896  QRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKN 955
            Q+QYLETS ACERQ+  II  +DL  IE+G++ L+ E+F LG+++DAVVSQVM+LLR+K 
Sbjct: 931  QKQYLETSAACERQMSKIIRDIDLENIEDGSLTLEKEDFFLGSVIDAVVSQVMLLLREKG 990

Query: 956  LHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDAD 1015
            + L+ DIPEEIK L+++GD++R+Q VL+DFL  +VR+APSPDGWVEI++ P +  I D  
Sbjct: 991  VQLIRDIPEEIKTLTVHGDQVRIQQVLADFLLNMVRYAPSPDGWVEIQLRPSMMPISDGV 1050

Query: 1016 QFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENS 1075
              VH++ R+  PGEG+P  L++DM++  ++W T EGLGL + RK+L +MNG ++Y+RE+ 
Sbjct: 1051 TVVHIELRIICPGEGLPPELVQDMFHS-SRWVTQEGLGLSMCRKMLKLMNGEIQYIRESE 1109

Query: 1076 KCYFVIDLEL 1085
            +CYF+I L+L
Sbjct: 1110 RCYFLIILDL 1119


>gi|464387|sp|P29130.2|PHYB_TOBAC RecName: Full=Phytochrome B
 gi|295346|gb|AAA34092.1| type II phytochrome [Nicotiana tabacum]
          Length = 1132

 Score = 1412 bits (3655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 686/1100 (62%), Positives = 853/1100 (77%), Gaps = 51/1100 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGV-PEEQITAYLSKIQRGGLIQPFG 97
            I  Y ADA L A FEQS  SGKSF+YS+S+ +  + V PE+QITAYL+KIQRGG IQPFG
Sbjct: 38   IAQYTADARLHAVFEQSGESGKSFDYSQSIKTTTQSVVPEQQITAYLTKIQRGGHIQPFG 97

Query: 98   CMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAK 153
            CM+AV+E +FR+I YSEN  EML L  +S    E  E+   +G D RTLFTP S   L +
Sbjct: 98   CMIAVDEASFRVIAYSENACEMLSLTPQSVPSLERPEIL-TVGTDVRTLFTPSSSVLLER 156

Query: 154  AAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQ 213
            A  +REI+LLNPI +HS +    KPFYAILHR+DVGIVIDLEP+++ DPALS+AGAVQSQ
Sbjct: 157  AFGAREITLLNPIWIHSKNSG--KPFYAILHRVDVGIVIDLEPARTEDPALSIAGAVQSQ 214

Query: 214  KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL 273
            KLAV AIS LQ+LPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E +  DL
Sbjct: 215  KLAVRAISHLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKIPDL 274

Query: 274  EPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPH 333
            EPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV V+Q + L QPLCLV STLR+PH
Sbjct: 275  EPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVRVVQDESLMQPLCLVGSTLRAPH 334

Query: 334  GCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYAC 385
            GCH QYM NMGSIASL +AVIIN  D        SM+LWGLVV HHTS R IPFPLRYAC
Sbjct: 335  GCHAQYMANMGSIASLTLAVIINGNDEEAVGGRSSMRLWGLVVGHHTSARCIPFPLRYAC 394

Query: 386  EFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDG 445
            EFL+QAF LQL MELQ+A QL+EK++LRTQ LLCDMLLRD+P  IV QSPSIMDLVKCDG
Sbjct: 395  EFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPTGIVIQSPSIMDLVKCDG 454

Query: 446  AALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCG 505
            AALY  G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAALLG AVCG
Sbjct: 455  AALYCQGKYYPLGVTPTEAQIKDIVEWLLTYHGDSTGLSTDSLADAGYPGAALLGDAVCG 514

Query: 506  MATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFP 565
            MA A ITSKDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS P
Sbjct: 515  MAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLP 574

Query: 566  WEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
            WE +E++AIHSL +++RDSF++ E  N SK   + Q    ++QG+DELSSVA EMVRLIE
Sbjct: 575  WENAEMDAIHSL-LILRDSFKDAEASN-SKAVVHAQLGEMELQGIDELSSVAREMVRLIE 632

Query: 626  TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
            TATAPIF VD  G INGWNAKVAELT L   EAMGKSL+ ++VH+ESQ   E L+  AL 
Sbjct: 633  TATAPIFAVDVEGRINGWNAKVAELTDLSVEEAMGKSLVHDLVHKESQETAEKLLFNALR 692

Query: 686  GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
            GEEDKNVE+KLR F  ++    V+++VNAC+S+DY NN+ GVCFVGQD+T +KV+MDKFI
Sbjct: 693  GEEDKNVEIKLRTFGPEQLKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFI 752

Query: 746  RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
             +QGDY+AI+ S NPLIPPIFASDEN CCSEWN AMEK+TGW R E+IG           
Sbjct: 753  HIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEIIGKMLVGEIFGSC 812

Query: 795  -------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCF 835
                               I  Q T+ FPF FF+R G++V+  LTA++R + EG++IG F
Sbjct: 813  CRLKGPDAMTKFMIVLHNAIGVQDTDKFPFSFFDRNGKYVQALLTANKRVNMEGQIIGAF 872

Query: 836  CFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISEN 895
            CF+QI  P+LQ AL  Q  ++   Y+++KELAY+ QE+K+PLNGIRF + LLE++ ++EN
Sbjct: 873  CFIQIASPELQQALRVQRQQEKKCYSQMKELAYLCQEIKSPLNGIRFTNSLLEATDLTEN 932

Query: 896  QRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKN 955
            Q+QYLETS ACERQ+  II  +DL  IE+G++ L+ EEF LG+++DAVVSQVM+LLR+++
Sbjct: 933  QKQYLETSAACERQMSKIIRDVDLENIEDGSLTLEKEEFFLGSVIDAVVSQVMLLLRERS 992

Query: 956  LHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDAD 1015
            + L+ DIPEEIK L+++GD++R+Q VL+DFL  +VR+APSPDGWVEI++ P +K I D  
Sbjct: 993  VQLIRDIPEEIKTLTVHGDQVRIQQVLADFLLNMVRYAPSPDGWVEIQLQPNMKQISDEV 1052

Query: 1016 QFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENS 1075
              VH++FR+  PGEG+P  L++DM++  ++W T EGLGL + RK+L +MNG ++Y+RE+ 
Sbjct: 1053 TVVHIEFRIVCPGEGLPPELVQDMFHS-SRWVTKEGLGLSMCRKILKLMNGDIQYIRESE 1111

Query: 1076 KCYFVI--DLELKTRGRQKM 1093
            +CYF+I  DL +  RG + +
Sbjct: 1112 RCYFLIILDLPMTRRGSKSL 1131


>gi|190586167|gb|ACE79200.1| phytochrome B-3 [Glycine max]
          Length = 1100

 Score = 1411 bits (3652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 682/1095 (62%), Positives = 847/1095 (77%), Gaps = 47/1095 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            I  Y  DA L A FEQS  SG+SFNYS S+    E VPE+QITAYL KIQRGG IQPFG 
Sbjct: 5    IAQYTEDARLHAVFEQSGESGRSFNYSESIRIASESVPEQQITAYLVKIQRGGFIQPFGS 64

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAK 153
            M+AV+EP+FRI+GYS+N  +ML +  +S     +  +    +G D R LFT  S   L K
Sbjct: 65   MIAVDEPSFRILGYSDNARDMLGITPQSVPSLDDKNDAAFALGTDVRALFTHSSALLLEK 124

Query: 154  AAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQ 213
            A ++REISL+NPI +HS  R+  KPFY ILHRIDVGIVIDLEP+++ DPALS+AGAVQSQ
Sbjct: 125  AFSAREISLMNPIWIHS--RTSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQ 182

Query: 214  KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL 273
            KLAV AIS+LQ+LPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVVSE +R DL
Sbjct: 183  KLAVRAISQLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVSESKRPDL 242

Query: 274  EPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPH 333
            EPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA  V V+Q + L QPLCLV STLR+PH
Sbjct: 243  EPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASAVRVVQDEALVQPLCLVGSTLRAPH 302

Query: 334  GCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYAC 385
            GCH QYM NMGSIASLVMAVIIN  D        SM+LWGLVVCHHTS R IPFPLRYAC
Sbjct: 303  GCHAQYMANMGSIASLVMAVIINGNDEEGVGGRSSMRLWGLVVCHHTSARCIPFPLRYAC 362

Query: 386  EFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDG 445
            EFL+QAF LQL MELQ+A Q  EK +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDG
Sbjct: 363  EFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDG 422

Query: 446  AALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCG 505
            AALY+ G  + +GVTPTE+Q++DI  WLL  HGD TGLSTDSL +AGYPGAA LG AVCG
Sbjct: 423  AALYFQGNYYPLGVTPTEAQIRDIIEWLLAFHGDSTGLSTDSLGDAGYPGAASLGDAVCG 482

Query: 506  MATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFP 565
            MA A IT KDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS P
Sbjct: 483  MAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLP 542

Query: 566  WEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
            WE +E++AIHSLQ+++RDSF++ E  N SK   + + +  ++QGVDELSSVA EMVRLIE
Sbjct: 543  WENAEMDAIHSLQLILRDSFKDAEHRN-SKAVADPRVSEQELQGVDELSSVAREMVRLIE 601

Query: 626  TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
            TATAPIF VD  G +NGWNAKV+ELTGLP  EAMGKSL+ ++V +ES+  +  L+ RAL 
Sbjct: 602  TATAPIFAVDVDGHVNGWNAKVSELTGLPVEEAMGKSLVHDLVFKESEETMNKLLSRALK 661

Query: 686  GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
            GEEDKNVE+K+R F  ++Q+  V+++VNAC+S+D+ NNV GVCFVGQD+T +K++MDKFI
Sbjct: 662  GEEDKNVEIKMRTFGPERQNKAVFLVVNACSSKDFTNNVVGVCFVGQDVTGQKIVMDKFI 721

Query: 746  RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
             +QGDY+AI+ S NPLIPPIFASD+N CC EWN AMEK+TGW R +VIG           
Sbjct: 722  NIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNTAMEKLTGWGRVDVIGKMLVGEVFGSC 781

Query: 795  -------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCF 835
                               + GQ T+ FPF F +R G++V+  LTA++R + EG++IG F
Sbjct: 782  CQLKGSDSITKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRVNMEGQIIGAF 841

Query: 836  CFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISEN 895
            CF+QI+ P+LQ AL+AQ  ++ + + ++KELAYI Q VKNPL+GIRF + LLE++S++  
Sbjct: 842  CFLQIMSPELQQALKAQRQQEKNSFGRMKELAYICQGVKNPLSGIRFTNSLLEATSLTNE 901

Query: 896  QRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKN 955
            Q+Q+LETS ACE+Q++ II  +DL  IE+G++EL+  EFLLGN+++AVVSQVM+LLR++N
Sbjct: 902  QKQFLETSVACEKQMLKIIRDVDLESIEDGSLELEKGEFLLGNVINAVVSQVMLLLRERN 961

Query: 956  LHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDAD 1015
            L L+ DIPEEIK L++ GD++R+Q VLSDFL  +VR+APSPDGWVEI V P +K I D  
Sbjct: 962  LQLIRDIPEEIKTLAVYGDQLRIQQVLSDFLLNIVRYAPSPDGWVEIHVRPRIKQISDGL 1021

Query: 1016 QFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENS 1075
              +H +FR+  PGEG+P  LI+DM+N  ++W T EGLGL +SRK+L +MNG V+Y+RE  
Sbjct: 1022 TLLHAEFRMVCPGEGLPPELIQDMFNN-SRWGTQEGLGLSMSRKILKLMNGEVQYIREAE 1080

Query: 1076 KCYFVIDLELKTRGR 1090
            +CYF + LEL    R
Sbjct: 1081 RCYFYVLLELPVTRR 1095


>gi|358248221|ref|NP_001240097.1| phytochrome B-like [Glycine max]
 gi|312231793|gb|ACE79198.2| phytochrome B-1 [Glycine max]
          Length = 1137

 Score = 1407 bits (3642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 682/1095 (62%), Positives = 845/1095 (77%), Gaps = 47/1095 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            I  Y  DA L A FEQS  SG+SFNYS S+    E VPE+QITAYL KIQRGG IQPFG 
Sbjct: 42   IAQYTEDARLHAVFEQSGESGRSFNYSESIRIASESVPEQQITAYLVKIQRGGFIQPFGS 101

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAK 153
            M+AV+EP+FRI+GYS+N  +ML +  +S     +  +    +G D R LFT  S   L K
Sbjct: 102  MIAVDEPSFRILGYSDNARDMLGITPQSVPSLDDKNDAAFALGTDVRALFTHSSALLLEK 161

Query: 154  AAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQ 213
            A ++REISL+NPI +HS  R+  KPFY ILHRIDVGIVIDLEP+++ DPALS+AGAVQSQ
Sbjct: 162  AFSAREISLMNPIWIHS--RTSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQ 219

Query: 214  KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL 273
            KLAV AIS+LQ+LPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVVSE +R DL
Sbjct: 220  KLAVRAISQLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVSESKRPDL 279

Query: 274  EPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPH 333
            EPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA  V V+Q + L QPLCLV STLR+PH
Sbjct: 280  EPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASAVRVVQDEALVQPLCLVGSTLRAPH 339

Query: 334  GCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYAC 385
            GCH QYM NMGSIASLVMAVIIN  D        SM+LWGLVVCHHTS R IPFPLRYAC
Sbjct: 340  GCHAQYMANMGSIASLVMAVIINGNDEEGVGGRSSMRLWGLVVCHHTSARCIPFPLRYAC 399

Query: 386  EFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDG 445
            EFL+QAF LQL MELQ+A Q  EK +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDG
Sbjct: 400  EFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDG 459

Query: 446  AALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCG 505
            AALY+ G  + +GVTPTE+Q++DI  WLL  HGD TGLSTDSL +AGYPGAA LG AVCG
Sbjct: 460  AALYFQGNYYPLGVTPTEAQIRDIIEWLLAFHGDSTGLSTDSLGDAGYPGAASLGDAVCG 519

Query: 506  MATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFP 565
            MA A IT KDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS P
Sbjct: 520  MAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLP 579

Query: 566  WEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
            WE +E++AIHSLQ+++RDSF++ E  N SK   +   +  ++QGVDELSSVA EMVRLIE
Sbjct: 580  WENAEMDAIHSLQLILRDSFKDAEHRN-SKAVVDPHVSEQELQGVDELSSVAREMVRLIE 638

Query: 626  TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
            TATAPIF VD  G +NGWNAKV+ELTGLP  EAMGKSL+ ++V +ES+  +  L+ RAL 
Sbjct: 639  TATAPIFAVDVDGHVNGWNAKVSELTGLPVEEAMGKSLVHDLVFKESEETMNKLLSRALK 698

Query: 686  GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
            GEEDKNVE+K+R F  + Q+  V+++VNAC+S+D+ NNV GVCFVGQD+T +K++MDKFI
Sbjct: 699  GEEDKNVEIKMRTFGPEHQNKAVFLVVNACSSKDFTNNVVGVCFVGQDVTGQKIVMDKFI 758

Query: 746  RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
             +QGDY+AI+ S NPLIPPIFASD+N CC EWN AMEK+TGW R +VIG           
Sbjct: 759  NIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNTAMEKLTGWGRVDVIGKMLVGEVFGSC 818

Query: 795  -------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCF 835
                               + GQ T+ FPF F +R G++V+  LTA++R + EG++IG F
Sbjct: 819  CQLKGSDSITKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRVNMEGQIIGAF 878

Query: 836  CFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISEN 895
            CF+QI+ P+LQ AL+AQ  ++ + + ++KELAYI Q VKNPL+GIRF + LLE++S++  
Sbjct: 879  CFLQIMSPELQQALKAQRQQEKNSFGRMKELAYICQGVKNPLSGIRFTNSLLEATSLTNE 938

Query: 896  QRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKN 955
            Q+Q+LETS ACE+Q++ II  +DL  IE+G++EL+  EFLLGN+++AVVSQVM+LLR++N
Sbjct: 939  QKQFLETSVACEKQMLKIIRDVDLESIEDGSLELEKGEFLLGNVINAVVSQVMLLLRERN 998

Query: 956  LHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDAD 1015
            L L+ DIPEEIK L++ GD++R+Q VLSDFL  +VR+APSPDGWVEI V P +K I D  
Sbjct: 999  LQLIRDIPEEIKTLAVYGDQLRIQQVLSDFLLNIVRYAPSPDGWVEIHVRPRIKQISDGL 1058

Query: 1016 QFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENS 1075
              +H +FR+  PGEG+P  LI+DM+N  ++W T EGLGL +SRK+L +MNG V+Y+RE  
Sbjct: 1059 TLLHAEFRMVCPGEGLPPELIQDMFNN-SRWGTQEGLGLSMSRKILKLMNGEVQYIREAE 1117

Query: 1076 KCYFVIDLELKTRGR 1090
            +CYF + LEL    R
Sbjct: 1118 RCYFYVLLELPVTRR 1132


>gi|121309520|dbj|BAF44083.1| phytochrome b [Lotus japonicus]
          Length = 1143

 Score = 1406 bits (3639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 679/1101 (61%), Positives = 853/1101 (77%), Gaps = 53/1101 (4%)

Query: 36   KTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQP 95
            +  I  Y  DA L A +EQS   G+SF+YS S+    E VPE+QITAYL++IQRGG IQP
Sbjct: 44   RKAIAQYTEDARLHAVYEQS---GESFDYSHSLRVTVESVPEQQITAYLARIQRGGYIQP 100

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRS------EDFELNGLIGIDARTLFTPPSGA 149
            FGCM+AV++P+FR++ YS+N  +ML +  +S      +    +  +G D R+LF+P S  
Sbjct: 101  FGCMIAVDDPSFRLLAYSDNARDMLGITPQSVPSIDDDSSSSSFALGTDVRSLFSPSSAV 160

Query: 150  SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
             L KA A+REISL+NP+ +HS  R+  +PFY ILHR+DVG+VIDLEP++S DPALS+AGA
Sbjct: 161  LLDKAFAAREISLMNPLWIHS--RTSGRPFYGILHRVDVGVVIDLEPARSDDPALSIAGA 218

Query: 210  VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
            VQSQKLAV AIS+LQ+LPGGD+ LLCD VV+ V++LTGYDRVM+Y FH+D+HGEVV+E +
Sbjct: 219  VQSQKLAVRAISQLQSLPGGDVKLLCDAVVQSVRELTGYDRVMVYKFHEDEHGEVVAESK 278

Query: 270  RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            R+DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV V+Q + L QPLCLV STL
Sbjct: 279  RADLEPYMGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVGVVQDEALMQPLCLVGSTL 338

Query: 330  RSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKLWGLVVCHHTSPRYIPF 379
            R+PHGCH QYM NMGSIASLVMAVIIN  D          SM+LWGLVVCHHTS R IPF
Sbjct: 339  RAPHGCHAQYMANMGSIASLVMAVIINGNDDDAVGVGGRSSMRLWGLVVCHHTSARCIPF 398

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+QAF LQL MELQ+A Q  EK +LRTQ LLCDMLLRD+P  IVTQSPSIMD
Sbjct: 399  PLRYACEFLMQAFGLQLNMELQMAAQSLEKRVLRTQTLLCDMLLRDSPAGIVTQSPSIMD 458

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAALY  G  + +GVTP+ESQ++DI  WLL  HGD TGLSTDSLA+AGYPGA+ L
Sbjct: 459  LVKCDGAALYCQGSYYPLGVTPSESQIRDIIDWLLAFHGDSTGLSTDSLADAGYPGASSL 518

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G AVCGMA A IT KDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVV
Sbjct: 519  GDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVV 578

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACE 619
            K+RS PW+ +E++AIHSLQ+++RDSF+E +E +DSK   NT     ++QGVDELSSVA E
Sbjct: 579  KSRSSPWDNAEMDAIHSLQLILRDSFKE-DEHSDSKAVVNTHLAELELQGVDELSSVARE 637

Query: 620  MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679
            MVRLIETATAPIF VD  G INGWNAKV+ELTGLP  EAMGKSL+ ++V++ES+  V+ L
Sbjct: 638  MVRLIETATAPIFAVDVEGHINGWNAKVSELTGLPVEEAMGKSLVRDLVYKESEETVDRL 697

Query: 680  ICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKV 739
            + RAL GEEDKNVE+KLR F  + Q   VY++VNAC+S+DY NN+ GVCFVGQD+T +KV
Sbjct: 698  LSRALKGEEDKNVEIKLRTFGPEHQDKAVYVVVNACSSKDYTNNIVGVCFVGQDVTGQKV 757

Query: 740  LMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----- 794
            +MDKFI +QGDY+AI+ S NPLIPPIFASD+N CC EWN AMEK+TGW R +VIG     
Sbjct: 758  VMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNNAMEKLTGWGRADVIGKLLVG 817

Query: 795  -------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEG 829
                                     + GQ T+ FPF F +R G++V+  LTA++R   +G
Sbjct: 818  EVFGSCCQLKGSDAITKFMIVLHNALGGQDTDKFPFSFLDRHGKYVQTFLTANKRVSIDG 877

Query: 830  KVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLES 889
            ++IG FCF+QI+ P+LQ AL+ Q  ++ + +A++KELAYI QEVKNPL+GIRF + LLE+
Sbjct: 878  QIIGAFCFLQIVSPELQQALKVQKQQEKNCFARMKELAYICQEVKNPLSGIRFTNSLLEA 937

Query: 890  SSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMV 949
            + +++ Q+Q+LETS ACE+Q++ II  +DL  IE+G++EL+  EFLLGN+++AVVSQVMV
Sbjct: 938  TGLTDEQKQFLETSAACEKQMLKIIRDVDLESIEDGSLELERGEFLLGNVINAVVSQVMV 997

Query: 950  LLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLK 1009
            LLR++NL L+ DIPEEIK L++ GD++R+Q VL+DFL  VVR+APSPDGWVEI V P +K
Sbjct: 998  LLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLSNVVRYAPSPDGWVEIHVYPKIK 1057

Query: 1010 LIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVR 1069
             I D    +H +FRL  PGEG+PS L++DM++  ++W T EGLGL +SRK+L +MNG V+
Sbjct: 1058 QISDGLTLLHAEFRLVCPGEGLPSELVQDMFHN-SRWVTQEGLGLCMSRKILKLMNGEVQ 1116

Query: 1070 YVRENSKCYFVIDLELKTRGR 1090
            Y+RE  +CYF + LEL    R
Sbjct: 1117 YIREAERCYFFVLLELPVTRR 1137


>gi|59798480|sp|Q9ZS62.1|PHYB1_SOLLC RecName: Full=Phytochrome B1
 gi|4038600|emb|CAA05293.1| phytochrome B1 [Solanum lycopersicum]
          Length = 1131

 Score = 1405 bits (3637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 682/1114 (61%), Positives = 851/1114 (76%), Gaps = 50/1114 (4%)

Query: 17   HNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPE 73
            HN++  ++  +    +N   +I   I  Y ADA L A FEQS  SGKSF+YS+SV +  +
Sbjct: 12   HNSSQGQAQSSGTSNMNYKDSISKAIAQYTADARLHAVFEQSGESGKSFDYSQSVKTTTQ 71

Query: 74   GVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFE 130
             VPE QITAYL+KIQRGG IQPFGCM+AV+E +FRII YSEN  EML L  +S    D  
Sbjct: 72   SVPERQITAYLTKIQRGGHIQPFGCMIAVDEASFRIIAYSENACEMLSLTPQSVPSLDKS 131

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
                +G D RTLFTP S   L +A  +REI+LLNPI +HS +    KPFYAILHR+DVGI
Sbjct: 132  EILTVGTDVRTLFTPSSSVLLERAFGAREITLLNPIWIHSKNSG--KPFYAILHRVDVGI 189

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            VIDLEP+++ DPALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVVE V++LTGYDR
Sbjct: 190  VIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRELTGYDR 249

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM+Y FH+D+HGEVV+E +RSDLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV
Sbjct: 250  VMVYKFHEDEHGEVVAESKRSDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPV 309

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SM 361
             V Q + L QPLCLV STLR+PHGCH QYM NMGSIASL +AVIIN  D         SM
Sbjct: 310  RVTQDESLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLTLAVIINGNDEEAVGGGRNSM 369

Query: 362  KLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDM 421
            +LWGLVV HHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL+EK++LRTQ LLCDM
Sbjct: 370  RLWGLVVGHHTSVRSIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDM 429

Query: 422  LLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCT 481
            LLRD+P  IVTQSPSIMDLVKCDGAALYY  + + +GVTPTE+Q+KDI  WLL  HGD T
Sbjct: 430  LLRDSPPGIVTQSPSIMDLVKCDGAALYYQRKYYPLGVTPTEAQIKDIVEWLLAYHGDST 489

Query: 482  GLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKD 541
            GLSTDSLA+AGYPGAA LG AVCGMA A ITSKDFLFWFRSHTAKE+KWGGAKHHPE KD
Sbjct: 490  GLSTDSLADAGYPGAASLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKD 549

Query: 542  NGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ 601
            +G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ E  N   +     
Sbjct: 550  DGQRMHPRSSFKAFLEVVKSRSSPWENAEMDAIHSLQLILRDSFKDAEASNSKAIVHALG 609

Query: 602  QNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGK 661
            +   ++QG+DELSSVA EMVRLIETATAPIFGVD +G INGWN KV ELTGL A EA GK
Sbjct: 610  E--MELQGIDELSSVAREMVRLIETATAPIFGVDVNGRINGWNEKVVELTGLSAEEAKGK 667

Query: 662  SLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYK 721
            SL+ +++++ESQ + E L+  AL G E KNVE+KLR F  ++    V+++VNAC+SRDY 
Sbjct: 668  SLVHDLLYKESQESAEKLLYNALRGVEGKNVEIKLRTFGAEQVEKAVFLVVNACSSRDYT 727

Query: 722  NNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAM 781
            N++ GV FVGQD+T EK++MDKFI +QGDY+AI+ S NPLIPPIFASDEN  CSEWN AM
Sbjct: 728  NSIVGVSFVGQDVTGEKIVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTSCSEWNTAM 787

Query: 782  EKVTGWMRHEVIG------------------------------ITGQGTENFPFGFFNRQ 811
            EK++GW R E++G                              I GQ T+ FPF FF+R 
Sbjct: 788  EKLSGWSREEIVGKMLVGEIFGSCCRLKGPDAMTKFMIVLHNAIGGQDTDKFPFSFFDRN 847

Query: 812  GQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQ 871
            G++V+  LTA++R + EG  IG FCF+QI  P+LQ AL  Q  ++   Y+++KELAYI Q
Sbjct: 848  GKYVQALLTANKRVNMEGDTIGAFCFIQIASPELQQALRVQRQQEKKCYSQMKELAYICQ 907

Query: 872  EVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKS 931
            EVK+PLNGIRF + LLE+++++E Q+QYLETS ACERQ+  II  +DL  IE+G++ L+ 
Sbjct: 908  EVKSPLNGIRFTNSLLEATNLTEYQKQYLETSAACERQMSKIIRDVDLENIEDGSLTLEK 967

Query: 932  EEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVR 991
            E+F LG+++DAVVSQVM+LLR+K + L+ DIPEEIK L+++GD++R+Q VL+DFL  +VR
Sbjct: 968  EDFFLGSVIDAVVSQVMLLLREKGVQLIRDIPEEIKTLTVHGDQVRIQQVLADFLLNMVR 1027

Query: 992  HAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEG 1051
            +APSPDGWVEI++ P +  I D    VH++ R+  PGEG+P  L++DM++  ++W T EG
Sbjct: 1028 YAPSPDGWVEIQLRPSMMPISDGATVVHIELRIICPGEGLPPELVQDMFHS-SRWVTQEG 1086

Query: 1052 LGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            LGL + RK+L +MNG ++Y+RE+ +CYF+I L+L
Sbjct: 1087 LGLSMCRKMLKLMNGEIQYIRESERCYFMIILDL 1120


>gi|255556392|ref|XP_002519230.1| phytochrome B, putative [Ricinus communis]
 gi|223541545|gb|EEF43094.1| phytochrome B, putative [Ricinus communis]
          Length = 1141

 Score = 1405 bits (3636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/1097 (62%), Positives = 850/1097 (77%), Gaps = 49/1097 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            I  Y  DA L A FEQS  SGKSF+YS+SV +  + + E+QITAYLSKIQRGG IQPFGC
Sbjct: 47   IAQYTVDAQLHAVFEQSGGSGKSFDYSQSVRTTNQSIAEQQITAYLSKIQRGGHIQPFGC 106

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
            M+AV+E +FR+I YSEN  E+L L  +S    E  E+   IG D RTLFT  S   L KA
Sbjct: 107  MIAVDEASFRVIAYSENARELLGLMPQSVPSLEKPEILS-IGTDVRTLFTQSSALLLEKA 165

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
              +REI+LLNP+ +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQK
Sbjct: 166  FGAREITLLNPLWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQK 223

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LAV AIS+LQ+LP GD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E ++ DLE
Sbjct: 224  LAVRAISQLQSLPSGDVRLLCDTVVECVRELTGYDRVMVYKFHEDEHGEVVAENKQPDLE 283

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PY+G+H+PA DIPQA+RFLFKQ+RVRMI DCHA PV +IQ + L QPLCLV STLR+PHG
Sbjct: 284  PYIGLHYPATDIPQASRFLFKQSRVRMIVDCHATPVSIIQDEALMQPLCLVGSTLRAPHG 343

Query: 335  CHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYACE 386
            CH QYM NMGSIASL MAVIIN  D        SM+LWGLVVCHHTS R IPFPLRYACE
Sbjct: 344  CHAQYMANMGSIASLAMAVIINGNDDEAIGGRSSMRLWGLVVCHHTSARSIPFPLRYACE 403

Query: 387  FLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGA 446
            FL+QAF LQL MELQ+A QL EK++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGA
Sbjct: 404  FLMQAFGLQLNMELQLASQLLEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGA 463

Query: 447  ALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGM 506
            ALYY G+ + +GVTP E+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAALLG AVCGM
Sbjct: 464  ALYYQGKYYPLGVTPAEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGM 523

Query: 507  ATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPW 566
            A A IT+KDFLFWFRSHTAKE+KWGGAKHHPE KD+  +MHPRSSFKAFLEVVK+RS PW
Sbjct: 524  AVAYITNKDFLFWFRSHTAKEIKWGGAKHHPEDKDDSQRMHPRSSFKAFLEVVKSRSLPW 583

Query: 567  EVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIET 626
            + +E++AIHSLQ+++RDSF++ E  N SK   N Q  G ++QG+DELSSVA EMVRLIET
Sbjct: 584  DNAEMDAIHSLQLILRDSFRDAEATN-SKAVANAQLRGLELQGMDELSSVAREMVRLIET 642

Query: 627  ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
            ATAPIF VD  G INGWNAKVAELTGL   EAMGKSL+ +++++ES+  V+ L+ RAL G
Sbjct: 643  ATAPIFAVDIDGCINGWNAKVAELTGLSVEEAMGKSLVHDLIYKESKETVDQLLRRALRG 702

Query: 687  EEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIR 746
            EEDKN+E+K+R F    +   V+++VNAC+S+DY NN+ GVCFVGQDIT +KV+MDKFI 
Sbjct: 703  EEDKNIEIKMRTFGFGHEKKAVFVVVNACSSKDYMNNIVGVCFVGQDITGQKVVMDKFIH 762

Query: 747  LQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------ 794
            +QGDY AI+ S NPLIPPIFASDEN CC EWN AMEK+TGW + E+IG            
Sbjct: 763  IQGDYRAIVHSPNPLIPPIFASDENTCCLEWNTAMEKLTGWAQGEIIGKMLVGEVFGSCC 822

Query: 795  ------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFC 836
                              I GQ T+ FPF FF++ G+ V+  LTAS+R + +G++IG FC
Sbjct: 823  RLKSPDVLTRFMIVLHNAIGGQDTDKFPFSFFDKNGKVVQALLTASKRVNMDGQIIGAFC 882

Query: 837  FMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQ 896
            F+QI  P+LQ AL+AQ  ++   + ++KELAYI QE+KNPL+GIRF + LLE++ ++E+Q
Sbjct: 883  FLQIASPELQQALKAQRQQEKKGFTRMKELAYICQEIKNPLSGIRFTNSLLEATDLTEDQ 942

Query: 897  RQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNL 956
            +Q+LETS ACE+QI+ II  +DL  IE+G++EL+  EFLLG++++AVVSQVM+LLR++NL
Sbjct: 943  KQFLETSAACEKQILKIIRDVDLESIEDGSLELEKGEFLLGSVINAVVSQVMLLLRERNL 1002

Query: 957  HLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQ 1016
             L+ DIP+EIK L++ GD++R+Q VL+DFL  +VR APS DGWVEI V P LK I +   
Sbjct: 1003 QLIRDIPDEIKTLAVYGDQVRIQQVLADFLLNMVRCAPSSDGWVEIHVHPTLKQITEGLT 1062

Query: 1017 FVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSK 1076
             +H +FR+  PGEG+P  L++DM++  ++WT+ EGLGL + RK+L +M G V+Y+RE+ +
Sbjct: 1063 VMHTEFRMVCPGEGLPPELVQDMFHS-SRWTSQEGLGLSMCRKILKLMQGEVQYIRESER 1121

Query: 1077 CYF--VIDLELKTRGRQ 1091
            CYF  V+DL +  RG +
Sbjct: 1122 CYFLVVLDLPIPRRGSK 1138


>gi|449516898|ref|XP_004165483.1| PREDICTED: phytochrome B-like [Cucumis sativus]
          Length = 1132

 Score = 1404 bits (3634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 677/1095 (61%), Positives = 849/1095 (77%), Gaps = 48/1095 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            I  Y  DA L A FEQS  SGKSF+YS+S+ +  + VPE+QITAYLSKIQRGG IQPFGC
Sbjct: 37   IAQYTVDARLHAVFEQSGESGKSFDYSQSIKTSTQSVPEQQITAYLSKIQRGGHIQPFGC 96

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
            M+A+EE +FR+I YSEN  E+L L  +S    E  E+   IG D R LFT  S   L KA
Sbjct: 97   MIAIEEASFRVIAYSENARELLGLTPQSVPSLEKPEIL-TIGTDVRNLFTSNSAILLEKA 155

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
              +REI+LLNP+ +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQK
Sbjct: 156  FGAREITLLNPVWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQK 213

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LAV AIS+LQALPGGDI LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E +R DLE
Sbjct: 214  LAVRAISQLQALPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLE 273

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PY+G+H+P+ DIPQA+RFLFKQNRVRMI DCHA PV VIQ   L Q LCLV STLR+PHG
Sbjct: 274  PYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQDAGLMQHLCLVGSTLRAPHG 333

Query: 335  CHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYACE 386
            CH QYM NMGSIASL MAV+IN  D        S +LWGLVVCHHTS R IPFPLRYACE
Sbjct: 334  CHAQYMANMGSIASLAMAVVINGNDDEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACE 393

Query: 387  FLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGA 446
            FL+QAF LQL MELQ+A QL+EK++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGA
Sbjct: 394  FLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGA 453

Query: 447  ALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGM 506
            ALYY G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAALLG AVCGM
Sbjct: 454  ALYYQGKYYPLGVTPTEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGM 513

Query: 507  ATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPW 566
            A A IT KDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PW
Sbjct: 514  AVAYITKKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPW 573

Query: 567  EVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIET 626
            E +E++AIHSLQ+++RDSF+  +   +SK   +       +QG+DELSSVA EMVRLIET
Sbjct: 574  ENAEMDAIHSLQLILRDSFKN-DVAINSKAVVHPHLGDLDLQGIDELSSVAREMVRLIET 632

Query: 627  ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
            ATAPIF VD+ G INGWNAK+AELTGL   EAMGKSL+ ++V++ES+  V+ L+ RAL G
Sbjct: 633  ATAPIFAVDADGRINGWNAKIAELTGLAVEEAMGKSLVRDLVYKESEETVDRLVSRALKG 692

Query: 687  EEDKNVELKLRKFELQK-QHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
            EEDKN+E+K+R F  ++ Q +  +++VNAC+SRDY +N+ GVCFVGQD+T +KV MDKF+
Sbjct: 693  EEDKNIEIKMRTFGPEEDQRTPFFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFV 752

Query: 746  RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
             +QGDY+AII S NPLIPPIFASD+N CCSEWN AMEK+TGW R ++IG           
Sbjct: 753  SIQGDYKAIIHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREDIIGKMLVGEVFGSC 812

Query: 795  -------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCF 835
                               I GQ  E +PF F++++G++V+  LTA++R + EG+++G F
Sbjct: 813  CRLKGPDALTKFMIVLHSAIGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAF 872

Query: 836  CFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISEN 895
            CF+QI  P+LQ  L  Q  ++ + +A++KELAYI QEVK+PL+GIRF + LLE++ +SE+
Sbjct: 873  CFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSED 932

Query: 896  QRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKN 955
            Q+Q+LETS ACE+Q++ II+ MDL CI++G MEL+  EFLLG++++AVVSQVM+LLR+++
Sbjct: 933  QKQFLETSVACEKQMLKIIEDMDLECIDDGTMELEKGEFLLGSVINAVVSQVMILLRERS 992

Query: 956  LHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDAD 1015
            L L+ DIPEE+K +++ GD++R+Q VL+DFL  +VR+APSP+GWVEI+V P LK   D  
Sbjct: 993  LQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIRVCPLLKQNSDGI 1052

Query: 1016 QFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENS 1075
               H +FR+  PGEG+P  L++DM++   +W T EGLGL + RK+L +MNG V+Y+RE+ 
Sbjct: 1053 TLAHTEFRIVCPGEGLPPELVQDMFHS-GRWVTQEGLGLSMCRKILKLMNGEVQYIRESE 1111

Query: 1076 KCYFVIDLELKTRGR 1090
            +CYF+I LEL    R
Sbjct: 1112 RCYFLITLELPLTER 1126


>gi|312231795|gb|ACE79199.2| phytochrome B-2 [Glycine max]
          Length = 1149

 Score = 1401 bits (3627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 678/1102 (61%), Positives = 845/1102 (76%), Gaps = 47/1102 (4%)

Query: 32   VNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGG 91
            ++     I  Y  DA L A FEQS  SG+SF+YS+S+    E VPE+QITAYL KIQRGG
Sbjct: 47   IDSTSKAIAQYTEDARLHAVFEQSGESGRSFDYSQSIRVTSESVPEQQITAYLLKIQRGG 106

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPP 146
             IQPFG M+AV+EP+FRI+ YS+N  +ML +  +S     +  +    +G D RTLFT  
Sbjct: 107  FIQPFGSMIAVDEPSFRILAYSDNARDMLGITPQSVPSLDDKNDAAFALGTDIRTLFTHS 166

Query: 147  SGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSL 206
            S   L KA ++REISL+NPI +HS  R+  KPFY ILHRIDVGIVIDLEP+++ DPALS+
Sbjct: 167  SAVLLEKAFSAREISLMNPIWIHS--RTSGKPFYGILHRIDVGIVIDLEPARTEDPALSI 224

Query: 207  AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
            AGAVQSQKLAV AIS+LQ+LPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+
Sbjct: 225  AGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYRFHEDEHGEVVA 284

Query: 267  EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
            E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA  V V+Q + L QPLCLV 
Sbjct: 285  ETKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASAVRVVQDEALVQPLCLVG 344

Query: 327  STLRSPHGCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIP 378
            STLR+PHGCH QYM NMGS ASLVMAVIIN  D        SM+LWGLV+CHHTS R IP
Sbjct: 345  STLRAPHGCHAQYMANMGSTASLVMAVIINGNDEEGVGGRTSMRLWGLVICHHTSARCIP 404

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+QAF LQL MELQ+A Q  EK +LRTQ LLCDMLLRD+P  IVTQSPSIM
Sbjct: 405  FPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIM 464

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALYY G  + +GVTPTE+Q++DI  WLL  H D TGLSTDSLA+AGYPGAA 
Sbjct: 465  DLVKCDGAALYYQGNYYPLGVTPTEAQIRDIIEWLLAFHRDSTGLSTDSLADAGYPGAAS 524

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
            LG AVCGMA A IT KDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEV
Sbjct: 525  LGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEV 584

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
            VK+RS PWE +E++AIHSLQ+++RDSF++ E  N SK   + + +  ++QGVDELSSVA 
Sbjct: 585  VKSRSLPWENAEMDAIHSLQLILRDSFKDAEHSN-SKAVLDPRMSELELQGVDELSSVAR 643

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETATAPIF VD  G INGWNAKV+ELTGLP  EAMGKSL+ ++V +ES+  V+ 
Sbjct: 644  EMVRLIETATAPIFAVDVDGRINGWNAKVSELTGLPVEEAMGKSLVRDLVFKESEETVDK 703

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            L+ RAL GEEDKNVE+K+R F  + Q+  V+++VNAC+S+DY NNV GVCFVGQD+T +K
Sbjct: 704  LLSRALKGEEDKNVEIKMRTFGPEHQNKAVFVVVNACSSKDYTNNVVGVCFVGQDVTGQK 763

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794
            ++MDKFI +QGDY+AI+ + NPLIPPIFASD+N CC EWN AMEK+TGW R +VIG    
Sbjct: 764  IVMDKFINIQGDYKAIVHNPNPLIPPIFASDDNTCCLEWNTAMEKLTGWSRADVIGKMLV 823

Query: 795  --------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAE 828
                                      + G  T+ FPF F +R G+ V+  LTA++R + +
Sbjct: 824  GEVFGSCCQLKGSDSITKFMIVLHNALGGHDTDRFPFSFLDRYGKHVQAFLTANKRVNMD 883

Query: 829  GKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLE 888
            G++IG FCF+QI+ P+LQ AL+AQ  ++ + +A++KELAYI Q VKNPL+GIRF + LLE
Sbjct: 884  GQIIGAFCFLQIVSPELQQALKAQRQQEKNSFARMKELAYICQGVKNPLSGIRFTNSLLE 943

Query: 889  SSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVM 948
            ++ +S  Q+Q+LETS ACE+Q++ II  +D+  IE+G++EL+  EFLLGN+++AVVSQVM
Sbjct: 944  ATCLSNEQKQFLETSAACEKQMLKIIHDVDIESIEDGSLELEKGEFLLGNVINAVVSQVM 1003

Query: 949  VLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGL 1008
            +LLR++NL L+ DIPEEIK L++ GD++R+Q VLSDFL  +VR+APSPDGWVEI V P +
Sbjct: 1004 LLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLSDFLLNIVRYAPSPDGWVEIHVHPRI 1063

Query: 1009 KLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRV 1068
            K I D    +H +FR+  PGEG+P  LI++M+N    W T EGLGL +SRK+L +MNG V
Sbjct: 1064 KQISDGLTLLHAEFRMVCPGEGLPPELIQNMFNNSG-WGTQEGLGLSMSRKILKLMNGEV 1122

Query: 1069 RYVRENSKCYFVIDLELKTRGR 1090
            +Y+RE  +CYF + LEL    R
Sbjct: 1123 QYIREAQRCYFYVLLELPVTRR 1144


>gi|356555997|ref|XP_003546314.1| PREDICTED: phytochrome B-like isoform 1 [Glycine max]
          Length = 1149

 Score = 1401 bits (3627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 679/1102 (61%), Positives = 845/1102 (76%), Gaps = 47/1102 (4%)

Query: 32   VNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGG 91
            ++     I  Y  DA L A FEQS  SG+SF+YS+S+    E VPE+QITAYL KIQRGG
Sbjct: 47   IDSTSKAIAQYTEDARLHAVFEQSGESGRSFDYSQSIRVTSESVPEQQITAYLLKIQRGG 106

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPP 146
             IQPFG M+AV+EP+FRI+ YS+N  +ML +  +S     +  +    +G D RTLFT  
Sbjct: 107  FIQPFGSMIAVDEPSFRILAYSDNARDMLGITPQSVPSLDDKNDAAFALGTDIRTLFTHS 166

Query: 147  SGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSL 206
            S   L KA ++REISL+NPI +HS  R+  KPFY ILHRIDVGIVIDLEP+++ DPALS+
Sbjct: 167  SAVLLEKAFSAREISLMNPIWIHS--RTSGKPFYGILHRIDVGIVIDLEPARTEDPALSI 224

Query: 207  AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
            AGAVQSQKLAV AIS+LQ+LPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+
Sbjct: 225  AGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYRFHEDEHGEVVA 284

Query: 267  EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
            E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA  V V+Q + L QPLCLV 
Sbjct: 285  ETKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASAVRVVQDEALVQPLCLVG 344

Query: 327  STLRSPHGCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIP 378
            STLR+PHGCH QYM NMGS ASLVMAVIIN  D        SM+LWGLVVCHHTS R IP
Sbjct: 345  STLRAPHGCHAQYMANMGSTASLVMAVIINGNDEEGVGGRTSMRLWGLVVCHHTSARCIP 404

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+QAF LQL MELQ+A Q  EK +LRTQ LLCDMLLRD+P  IVTQSPSIM
Sbjct: 405  FPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIM 464

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALYY G  + +GVTPTE+Q++DI  WLL  H D TGLSTDSLA+AGYPGAA 
Sbjct: 465  DLVKCDGAALYYQGNYYPLGVTPTEAQIRDIIEWLLAFHRDSTGLSTDSLADAGYPGAAS 524

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
            LG AVCGMA A IT KDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEV
Sbjct: 525  LGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEV 584

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
            VK+RS PWE +E++AIHSLQ+++RDSF++ E  N SK   + + +  ++QGVDELSSVA 
Sbjct: 585  VKSRSLPWENAEMDAIHSLQLILRDSFKDAEHSN-SKAVLDPRMSELELQGVDELSSVAR 643

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETATAPIF VD  G INGWNAKV+ELTGLP  EAMGKSL+ ++V +ES+  V+ 
Sbjct: 644  EMVRLIETATAPIFAVDVDGRINGWNAKVSELTGLPVEEAMGKSLVRDLVFKESEETVDK 703

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            L+ RAL GEEDKNVE+K+R F  + Q+  V+++VNAC+S+DY NNV GVCFVGQD+T +K
Sbjct: 704  LLSRALKGEEDKNVEIKMRTFGPEHQNKAVFVVVNACSSKDYTNNVVGVCFVGQDVTGQK 763

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794
            ++MDKFI +QGDY+AI+ + NPLIPPIFASD+N CC EWN AMEK+TGW R +VIG    
Sbjct: 764  IVMDKFINIQGDYKAIVHNPNPLIPPIFASDDNTCCLEWNTAMEKLTGWSRADVIGKMLV 823

Query: 795  --------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAE 828
                                      + G  T+ FPF F +R G+ V+  LTA++R + +
Sbjct: 824  GEVFGSCCQLKGSDSITKFMIVLHNALGGHDTDRFPFSFLDRYGKHVQAFLTANKRVNMD 883

Query: 829  GKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLE 888
            G++IG FCF+QI+ P+LQ AL+AQ  ++ + +A++KELAYI Q VKNPL+GIRF + LLE
Sbjct: 884  GQIIGAFCFLQIVSPELQQALKAQRQQEKNSFARMKELAYICQGVKNPLSGIRFTNSLLE 943

Query: 889  SSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVM 948
            ++ +S  Q+Q+LETS ACE+Q++ II  +D+  IE+G++EL+  EFLLGN+++AVVSQVM
Sbjct: 944  ATCLSNEQKQFLETSAACEKQMLKIIHDVDIESIEDGSLELEKGEFLLGNVINAVVSQVM 1003

Query: 949  VLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGL 1008
            +LLR++NL L+ DIPEEIK L++ GD++R+Q VLSDFL  +VR+APSPDGWVEI V P +
Sbjct: 1004 LLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLSDFLLNIVRYAPSPDGWVEIHVHPRI 1063

Query: 1009 KLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRV 1068
            K I D    +H +FR+  PGEG+P  LI++M+N    W T EGLGL +SRK+L +MNG V
Sbjct: 1064 KQISDGLTLLHAEFRMVCPGEGLPPELIQNMFNNSG-WGTQEGLGLSMSRKILKLMNGEV 1122

Query: 1069 RYVRENSKCYFVIDLELKTRGR 1090
            +Y+RE  +CYF + LEL    R
Sbjct: 1123 QYIREAQRCYFYVLLELPVTRR 1144


>gi|449432920|ref|XP_004134246.1| PREDICTED: phytochrome B-like [Cucumis sativus]
          Length = 1132

 Score = 1401 bits (3626), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 676/1095 (61%), Positives = 848/1095 (77%), Gaps = 48/1095 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            I  Y  DA L A FEQS  SGKSF+YS+S+ +  + VPE+QITAYLSKIQRGG IQPFGC
Sbjct: 37   IAQYTVDARLHAVFEQSGESGKSFDYSQSIKTSTQSVPEQQITAYLSKIQRGGHIQPFGC 96

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
            M+A+EE +FR+I YSEN  E+L L  +S    E  E+   IG D R LFT  S   L KA
Sbjct: 97   MIAIEEASFRVIAYSENARELLGLTPQSVPSLEKPEIL-TIGTDVRNLFTSNSAILLEKA 155

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
              +REI+LLNP+ +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQK
Sbjct: 156  FGAREITLLNPVWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQK 213

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LAV AIS+LQALPGGDI LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E +R DLE
Sbjct: 214  LAVRAISQLQALPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLE 273

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PY+G+H+P+ DIPQA+RFLFKQNRVRMI DCHA PV VIQ   L Q LCLV STLR+PHG
Sbjct: 274  PYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQDAGLMQHLCLVGSTLRAPHG 333

Query: 335  CHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYACE 386
            CH QYM NMGSIASL MAV+IN  D        S +LWGLVVCHHTS R IPFPLRYACE
Sbjct: 334  CHAQYMANMGSIASLAMAVVINGNDDEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACE 393

Query: 387  FLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGA 446
            FL+QAF LQL MELQ+A QL+EK++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGA
Sbjct: 394  FLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGA 453

Query: 447  ALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGM 506
            ALYY G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAALLG AVCGM
Sbjct: 454  ALYYQGKYYPLGVTPTEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGM 513

Query: 507  ATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPW 566
            A A IT KDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PW
Sbjct: 514  AVAYITKKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPW 573

Query: 567  EVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIET 626
            E +E++AIHSLQ+++RDSF+  +   +SK   +       +QG+DELSSVA EMVRLIET
Sbjct: 574  ENAEMDAIHSLQLILRDSFKN-DVAINSKAVVHPHLGDLDLQGIDELSSVAREMVRLIET 632

Query: 627  ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
            ATAPIF VD+ G INGWNAK+AELTGL   EAMGKSL+ ++V++ES+  V+ L+ RAL G
Sbjct: 633  ATAPIFAVDADGRINGWNAKIAELTGLAVEEAMGKSLVRDLVYKESEETVDRLVSRALKG 692

Query: 687  EEDKNVELKLRKFELQK-QHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
            EEDKN+E+K+R F  ++ Q +  +++VNAC+SRDY +N+ GVCFVGQD+T +KV MDKF+
Sbjct: 693  EEDKNIEIKMRTFGPEEDQRTPFFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFV 752

Query: 746  RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
             +QGDY+AII S NPLIPPIFASD+N CCSEWN AMEK+TGW R ++IG           
Sbjct: 753  SIQGDYKAIIHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREDIIGKMLVGEVFGSC 812

Query: 795  -------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCF 835
                               I GQ  E +PF F++++G++V+  LTA++R + EG+++G F
Sbjct: 813  CRLKGPDALTKFMIVLHSAIGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAF 872

Query: 836  CFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISEN 895
            CF+QI  P+LQ  L  Q  ++ + +A++KELAYI QEVK+PL+GIRF + LLE++ +SE+
Sbjct: 873  CFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSED 932

Query: 896  QRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKN 955
            Q+Q+LETS ACE+Q++ II+ MDL CI++G MEL+  EFLL ++++AVVSQVM+LLR+++
Sbjct: 933  QKQFLETSVACEKQMLKIIEDMDLECIDDGTMELEKGEFLLRSVINAVVSQVMILLRERS 992

Query: 956  LHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDAD 1015
            L L+ DIPEE+K +++ GD++R+Q VL+DFL  +VR+APSP+GWVEI+V P LK   D  
Sbjct: 993  LQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIRVCPLLKQNSDGI 1052

Query: 1016 QFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENS 1075
               H +FR+  PGEG+P  L++DM++   +W T EGLGL + RK+L +MNG V+Y+RE+ 
Sbjct: 1053 TLAHTEFRIVCPGEGLPPELVQDMFHS-GRWVTQEGLGLSMCRKILKLMNGEVQYIRESE 1111

Query: 1076 KCYFVIDLELKTRGR 1090
            +CYF+I LEL    R
Sbjct: 1112 RCYFLITLELPLTER 1126


>gi|258677127|gb|ACV87354.1| phytochrome B [Aquilegia formosa]
          Length = 1132

 Score = 1401 bits (3626), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/1101 (61%), Positives = 857/1101 (77%), Gaps = 49/1101 (4%)

Query: 32   VNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISP-PEGVPEEQITAYLSKIQRG 90
            VNK    I  +  DA L A FEQS  SGK F+YS+S+ S   + +PE+QITAYLS+IQRG
Sbjct: 33   VNKA---IAQFTVDARLHAVFEQSGESGKPFDYSQSIRSTTSQSIPEQQITAYLSRIQRG 89

Query: 91   GLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL--IGIDARTLFTPPS 147
            G IQPFGCM++V+E +FR+I +SEN  EMLDL  +S    +   L  +G D RTLFT  S
Sbjct: 90   GHIQPFGCMISVDESSFRVIAFSENATEMLDLTPQSVPTLDKPQLLDVGTDVRTLFTQSS 149

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
               L KA ++REI+LLNP+ +HS +    KPFYAILH+IDVGIVIDLEP+++ DPALS+A
Sbjct: 150  VGLLEKAFSAREITLLNPVWIHSKNSG--KPFYAILHKIDVGIVIDLEPARTEDPALSIA 207

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GAVQSQK+AV AISRLQ+LPGGDI +LCDTVVE+V+ LTGYDRVM+Y FHDD+HGEVV+E
Sbjct: 208  GAVQSQKIAVRAISRLQSLPGGDINILCDTVVENVRDLTGYDRVMVYKFHDDEHGEVVAE 267

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
             +RSDLEP++G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV VIQ + L QPLCLV S
Sbjct: 268  SKRSDLEPFIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVHVIQDEALMQPLCLVGS 327

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS--------MKLWGLVVCHHTSPRYIPF 379
            TLR+PHGCH QYM NMGSIASL +AV+IN  D         MKLWGLVVCHHTS R IPF
Sbjct: 328  TLRAPHGCHAQYMANMGSIASLALAVVINGNDEEGTSGRNPMKLWGLVVCHHTSARCIPF 387

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLR+ACEFL+QAF LQL MELQ+A QL+EK++LRTQ LLCDMLLRD+P  IVTQSPSIMD
Sbjct: 388  PLRHACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMD 447

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDG+ALYY G+ + +GVTPTE+Q+KDI  WL   HGD TG+STDSLA+AGYPGAA L
Sbjct: 448  LVKCDGSALYYKGKFYPIGVTPTEAQMKDIVDWLWAYHGDSTGVSTDSLADAGYPGAASL 507

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G AV GMA A ITS+DFLFWFRS+TAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVV
Sbjct: 508  GDAVRGMAVAYITSRDFLFWFRSNTAKEIKWGGAKHHPEDKDDGHRMHPRSSFKAFLEVV 567

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACE 619
            K+RS PWE +E++AIHSLQ+++RDSF++ E  N SK    +     ++QGVDELSSVA E
Sbjct: 568  KSRSLPWENAEMDAIHSLQLILRDSFRDAEGSN-SKPLITSPPGDLELQGVDELSSVARE 626

Query: 620  MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679
            MVRLIETATAPIF VDS G INGWNAK+AELTGL   EAMGKSL+ ++V +ES   V+NL
Sbjct: 627  MVRLIETATAPIFAVDSDGRINGWNAKIAELTGLSVGEAMGKSLVHDLVFKESVEVVDNL 686

Query: 680  ICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKV 739
            +  A  G+EDKNVE+KLRKF  +K    ++++VNA +SRDY NN+ GVCFVGQD+T +KV
Sbjct: 687  LKHAFRGQEDKNVEIKLRKFIPRKPEEAIFVVVNARSSRDYTNNIVGVCFVGQDVTSQKV 746

Query: 740  LMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----- 794
            +MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R E++G     
Sbjct: 747  VMDKFIHIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWDRGEIMGKMLVG 806

Query: 795  -------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEG 829
                                     I GQ T+ FPF FFNR G++V+  LTA++R + EG
Sbjct: 807  EVFGGCCRLKGPDSLTKFMIVLHSAIGGQDTDKFPFAFFNRDGKYVQALLTANKRANLEG 866

Query: 830  KVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLES 889
            ++IG FCF+QI  P+LQ ALE Q  ++   +A++KELAYI QE+KNPL+GIRF + LLE+
Sbjct: 867  QIIGAFCFLQIASPELQHALEIQRQQEKKCFARVKELAYICQEIKNPLSGIRFTNTLLEA 926

Query: 890  SSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMV 949
            + ++E+Q+Q+LETS ACERQ+M II  +DL+ IE+G++EL+  +FLLG++++AVVSQVM+
Sbjct: 927  TDLTEDQKQFLETSAACERQMMKIIKDVDLQNIEDGSLELERCDFLLGSVINAVVSQVMI 986

Query: 950  LLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLK 1009
            LLR++ L L+ DIPEEIK L+++ D++R+Q VL+DFL  +VR+AP PDGWVEI+V P LK
Sbjct: 987  LLRERGLQLIRDIPEEIKTLAVSSDQVRIQQVLADFLLNMVRYAPMPDGWVEIQVRPNLK 1046

Query: 1010 LIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVR 1069
               D  + VH++FR+  PGEG+P  L++DM++  ++W T EGLGL + RK+L +MNG V+
Sbjct: 1047 QSSDGIELVHLEFRMVCPGEGLPPELVQDMFHS-SRWATQEGLGLSMCRKILKLMNGEVQ 1105

Query: 1070 YVRENSKCYFVIDLELKTRGR 1090
            Y+RE+ +C+F+I LEL T  R
Sbjct: 1106 YIRESERCFFIIILELPTPQR 1126


>gi|401782504|dbj|BAM36555.1| phytochrome B [Fragaria x ananassa]
          Length = 1136

 Score = 1395 bits (3612), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/1104 (61%), Positives = 850/1104 (76%), Gaps = 49/1104 (4%)

Query: 23   KSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITA 82
            ++S A  + V+K    +  Y  DA L A FEQS  SGKSF+YS+S+ S  + VPE+QITA
Sbjct: 29   RNSTAAAESVSKA---VAQYTVDARLHAVFEQS-ESGKSFDYSQSMRSTKDSVPEKQITA 84

Query: 83   YLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNG---LIGIDA 139
            YLSKIQRGG IQPFGC +AV+E TF +I YSEN  ++LD+  +S     +     +G D 
Sbjct: 85   YLSKIQRGGHIQPFGCTIAVDESTFAVIAYSENARDLLDMMPQSVPVMQSREILTVGTDF 144

Query: 140  RTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKS 199
            RTLF+P S   L +A  +REI+LLNPI +HS      KPFYAILHRIDVG+VIDLEP++S
Sbjct: 145  RTLFSPSSSTLLEQAFGAREITLLNPIWIHSKISG--KPFYAILHRIDVGVVIDLEPARS 202

Query: 200  GDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDD 259
             DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE V++LTGYDRVM+Y FH+D
Sbjct: 203  EDPALSIAGAVQSQKLAVRAISKLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHED 262

Query: 260  DHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELK 319
            +HGEV++E +R+DLEPYLG+H+PA DIPQA+RFLFKQNRVRMI DCHA PV VIQ + L 
Sbjct: 263  EHGEVLAESKRADLEPYLGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVQVIQDEGLM 322

Query: 320  QPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHH 371
            QPLCLV STLR+PHGCH QYM NMGSIASL +AVIIN  D        SM+LWGLVVCHH
Sbjct: 323  QPLCLVGSTLRAPHGCHSQYMANMGSIASLALAVIINGNDDEAIGGRSSMRLWGLVVCHH 382

Query: 372  TSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIV 431
            TS R IPFPLRYACEFL+QAF LQL MELQ+A QL EK++LRTQ LLCDMLLRD P  IV
Sbjct: 383  TSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQLLEKHVLRTQTLLCDMLLRDTPTGIV 442

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            TQSPSIM+LVKCDGAALYY  + + VGVTPTE+Q+KDI  WLL++HG  TGLSTDSL +A
Sbjct: 443  TQSPSIMNLVKCDGAALYYQDKYYPVGVTPTEAQIKDIVEWLLSSHGTSTGLSTDSLGDA 502

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
            GYPGAA LG AVCGMA A IT +DFLFWFRSHTAKEVKWGGAKHHPE KD+G +MHPRSS
Sbjct: 503  GYPGAASLGDAVCGMAAAYITKRDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSS 562

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVD 611
            FKAFLEVVK+RS PW+ +E++AIHSLQI++RDSF++ E  N   V  N Q    ++QG+D
Sbjct: 563  FKAFLEVVKSRSLPWDNAEMDAIHSLQIILRDSFKDAETNNLKAVTEN-QHGDLEIQGID 621

Query: 612  ELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEE 671
            ELSSVA EMVRLIETATAPIF VD +G INGWNAK+AELTGL   EA GKSL+ ++V++E
Sbjct: 622  ELSSVAREMVRLIETATAPIFAVDVNGCINGWNAKIAELTGLAVEEATGKSLVHDLVYKE 681

Query: 672  SQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVG 731
            S+  V+ L+  AL GEEDKNVE+KLR F  +  +  V+++VNAC+S+DY NN+ GVCFVG
Sbjct: 682  SEEIVDKLLIHALRGEEDKNVEIKLRTFGPEHDNKPVFVVVNACSSKDYTNNIVGVCFVG 741

Query: 732  QDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHE 791
            QD+T +KV+MDKFI +QGDY+AI+ S NPLIPPIFASD+N CCSEWN AMEK+TGW R +
Sbjct: 742  QDVTGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCSEWNNAMEKLTGWSRGD 801

Query: 792  VIG------------------------------ITGQGTENFPFGFFNRQGQFVEVALTA 821
            +IG                              I G  T+ FPF FF+R G++V+  LTA
Sbjct: 802  MIGKMLVGEIFGSCCRLKGPDAITKFMIVLHNAIGGSDTDKFPFSFFDRNGKYVQALLTA 861

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            +RR + +G+VIG FCF+QI  P+LQ AL  Q  ++   +A++KELAY+ QE+K+PL+GIR
Sbjct: 862  NRRVNVDGQVIGAFCFLQIPSPELQQALRVQRQQEKQCFARMKELAYMCQEIKSPLSGIR 921

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F + LL  + +SE+Q+Q+LETS ACE+QI+ II  +DL  IE+G++EL+ E+FLLG++++
Sbjct: 922  FTNSLLGGTELSEDQKQFLETSAACEKQILKIIKDVDLASIEDGSLELEKEDFLLGSVIN 981

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
            AVVSQVM+LLR++NL L+ DIPEE+K L++ GD++R+Q VL+DFL  +VR+APS +GWVE
Sbjct: 982  AVVSQVMLLLRERNLQLIRDIPEEVKTLAVYGDQVRIQQVLADFLLNMVRYAPSDEGWVE 1041

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            I V P L  I D    VH +FRL  PGEG+P  L++DM++  +QW T EGLGL + RK+L
Sbjct: 1042 IHVRPILTTISDGHSMVHTEFRLVCPGEGLPPQLVQDMFHS-SQWLTQEGLGLSMCRKIL 1100

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
             +M G V+Y+RE+ +CYF++ LEL
Sbjct: 1101 KLMGGDVQYIRESERCYFLVILEL 1124


>gi|255642594|gb|ACU21557.1| phytochrome B [Medicago sativa]
          Length = 1141

 Score = 1389 bits (3596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 685/1138 (60%), Positives = 856/1138 (75%), Gaps = 61/1138 (5%)

Query: 7    RETTNSIGGGHN--TTPFKSSDAKMKPVNKG--KTIIDHYNADAGLLAEFEQSVASGKSF 62
            + T++SI   H    T  K ++ +   VN    K  I  Y  DA L A FEQS   G SF
Sbjct: 11   KTTSSSISQRHQLQITTTKETEQQNNNVNNKSMKKAIAQYIEDARLHAVFEQS---GDSF 67

Query: 63   NYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDL 122
            +YS+S+      VPE+QITAYL+KIQRGG IQPFG M+AV+EP+FR++ YSEN  +ML +
Sbjct: 68   DYSQSIRLTTASVPEQQITAYLAKIQRGGFIQPFGSMIAVDEPSFRVLAYSENARDMLGI 127

Query: 123  RSRS-------EDFELNGL-IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRS 174
              +S       ++   +G  IG D R+LFT  SG  L KA ++REISL+NPI +HS  RS
Sbjct: 128  TPQSVPSLEDDDESSSSGFNIGTDVRSLFTHSSGVLLEKAFSAREISLMNPIWIHS--RS 185

Query: 175  IEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLL 234
              KPFY ILHRIDVG+VIDLEP++S DPALS+AGAVQSQKLAV AIS+LQ+LPGGD+ +L
Sbjct: 186  TGKPFYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKVL 245

Query: 235  CDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLF 294
            CD VVE V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLF
Sbjct: 246  CDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRIDLEPYMGLHYPATDIPQASRFLF 305

Query: 295  KQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVI 354
            KQNRVRMI DC+A PV V Q + L QP+CLV STLR+PHGCH QYM NMGSIASL MAVI
Sbjct: 306  KQNRVRMIVDCNASPVRVFQDEALVQPVCLVGSTLRAPHGCHAQYMANMGSIASLAMAVI 365

Query: 355  INSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402
            IN  D            SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+
Sbjct: 366  INGNDEDGVGIGGTGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQL 425

Query: 403  AMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPT 462
            A Q  EK +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAAL+Y G  + +GVTPT
Sbjct: 426  AAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALFYQGNYYPLGVTPT 485

Query: 463  ESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRS 522
            ESQ++DI  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A IT KDFLFWFRS
Sbjct: 486  ESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRS 545

Query: 523  HTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMR 582
            HTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS  W+ +E++AIHSLQ+++R
Sbjct: 546  HTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSMQWDNAEMDAIHSLQLILR 605

Query: 583  DSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTING 642
            DSF+E  E NDSK   +T     ++QGVDELSSVA EMVRLIETATAPIF VD +G ING
Sbjct: 606  DSFKE-AENNDSKAVVHTHMAELELQGVDELSSVAREMVRLIETATAPIFAVDVNGRING 664

Query: 643  WNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQ 702
            WNAKV+ELTGL   +AMGKSL+ ++V++ESQ  V+ L+  AL GEEDKNVE+K+R F   
Sbjct: 665  WNAKVSELTGLLVEDAMGKSLLHDLVYKESQETVDKLLSHALKGEEDKNVEIKMRTFGPG 724

Query: 703  KQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLI 762
             Q+  V+I+VNAC+S+DY NN+ GVCFVGQD+T +KV+MDKFI +QGDY+AI+ S N LI
Sbjct: 725  NQNKAVFIVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNALI 784

Query: 763  PPIFASDENACCSEWNAAMEKVTGWMRHEVIG---------------------------- 794
            PPIFASD+N CC EWN AMEK++GW R +VIG                            
Sbjct: 785  PPIFASDDNTCCLEWNNAMEKLSGWSRTDVIGKLLVGEVFGSFCQLKGSDAMTKFMIVLH 844

Query: 795  --ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQ 852
              + GQ T+ FPF F +  G++V+  LTA++R + +G++IG FCF+QI+ P+LQ AL  Q
Sbjct: 845  NALGGQDTDKFPFSFVDGHGKYVQTFLTANKRVNIDGQIIGAFCFLQIVSPELQQALTVQ 904

Query: 853  GLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMT 912
              +D   +A++KELAYI QEVKNPL+GIRF + LLES+ +++ Q+Q LETS ACE+Q++ 
Sbjct: 905  RQQDSSCFARMKELAYICQEVKNPLSGIRFTNSLLESTCLTDEQKQLLETSAACEKQMLK 964

Query: 913  IIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLN 972
            II  +DL  I++G++ L+ +EFLL N+++AVVSQVM+LLR++NL L+ DIPEEIK L++ 
Sbjct: 965  IIRDIDLDSIDDGSLALEKQEFLLENVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVY 1024

Query: 973  GDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIP 1032
            GD++R Q VL+DFL  VVR+APSPDGWVEI V P +K I D    +H +FR+  PGEG+P
Sbjct: 1025 GDQLRFQQVLADFLMNVVRYAPSPDGWVEIHVFPRIKQISDGLTLLHAEFRMVCPGEGLP 1084

Query: 1033 SHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRGR 1090
              LI+DM++  ++W T EGLGL +SRK++ +MNG V+YVRE  +CYF++ LEL    R
Sbjct: 1085 PELIQDMFHN-SKWVTQEGLGLSMSRKIIKLMNGEVQYVREAERCYFLVVLELPVTRR 1141


>gi|224101559|ref|XP_002312330.1| predicted protein [Populus trichocarpa]
 gi|222852150|gb|EEE89697.1| predicted protein [Populus trichocarpa]
          Length = 1142

 Score = 1386 bits (3588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/1090 (61%), Positives = 840/1090 (77%), Gaps = 47/1090 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            I  Y  DA L A FEQS  SGKSF+YS+SV +  + VPEEQITAYLSKIQRGG IQPFGC
Sbjct: 41   IAQYTVDAQLHAVFEQSGGSGKSFDYSQSVRTTSQSVPEEQITAYLSKIQRGGHIQPFGC 100

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGLI--GIDARTLFTPPSGASLAKAA 155
            M+AV+E +FR+I YSEN  EML L  +S    +   ++  G D RTLF P S A L KA 
Sbjct: 101  MIAVDEGSFRVIAYSENAKEMLGLTPQSVPSLDKQEILSDGTDVRTLFRPSSSAMLEKAF 160

Query: 156  ASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKL 215
             +REI+LLNPI +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKL
Sbjct: 161  GAREITLLNPIWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKL 218

Query: 216  AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP 275
            AV +IS+LQ+LPGGDI LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E +R+DLEP
Sbjct: 219  AVRSISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAENKRADLEP 278

Query: 276  YLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGC 335
            Y+G+H+P+ DIPQA+RFLFKQNRVRMI DCHA PV VIQ + L QPLCLV STLR+PHGC
Sbjct: 279  YIGLHYPSTDIPQASRFLFKQNRVRMIVDCHATPVRVIQDEALMQPLCLVGSTLRAPHGC 338

Query: 336  HLQYMTNMGSIASLVMAVIINS--------KDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
            H QYM NMGSIASL MAVIIN         ++S +LWGLVVCHHTS R IPFPLRYACEF
Sbjct: 339  HAQYMANMGSIASLAMAVIINGNEEEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEF 398

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L+QAF LQL MELQ+A QL+EK++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA
Sbjct: 399  LMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAA 458

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA
Sbjct: 459  LYYQGQYYPLGVTPTEAQIKDIVEWLLALHGDSTGLSTDSLADAGYPGAASLGNAVCGMA 518

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
             A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS  WE
Sbjct: 519  VAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLLWE 578

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             +E++AIHSLQ+++RDSF+++E  N SK   + Q   +++QG+DELSSVA EMVRLIETA
Sbjct: 579  NAEMDAIHSLQLILRDSFRDVEATN-SKAVVHAQLEDTELQGMDELSSVAREMVRLIETA 637

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
            TAPIF VD  G INGWNAKVAELTGL   +AMGKSL+ ++V++E +  V+ L+ RAL GE
Sbjct: 638  TAPIFAVDVDGCINGWNAKVAELTGLSVDKAMGKSLVHDLVYKEYEETVDKLLHRALRGE 697

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            EDKNVE+KLR F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T +KV+MDK++ +
Sbjct: 698  EDKNVEIKLRTFGSEHQKKALFVVVNACSSKDYMNNIVGVCFVGQDVTGQKVVMDKYVHI 757

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY+AI+ S NPLIPPIFASDEN CC EWN AMEK TGW R EVIG             
Sbjct: 758  QGDYKAIVHSPNPLIPPIFASDENTCCLEWNTAMEKFTGWSRGEVIGKMLVGEVFGSCCQ 817

Query: 795  -----------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCF 837
                             I GQ T+  PF FF+R G++V+  LTA++R + EG+++G FCF
Sbjct: 818  LKGSDALTKFMIALHNAIGGQDTDKLPFSFFDRNGKYVQALLTANKRVNMEGEIVGAFCF 877

Query: 838  MQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQR 897
            +QI   +LQ AL+ Q  ++    A++KELAYI QE++NPL+G+RF + LLE++ ++E+Q+
Sbjct: 878  LQIASNELQQALKVQRQQEKKCSARMKELAYICQEIRNPLSGLRFTNSLLENTDLTEDQK 937

Query: 898  QYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLH 957
            Q+LETS ACE+QI+ I   +DL  IE G +EL+  EFL G++++AVVSQ M+LLR++NL 
Sbjct: 938  QFLETSAACEKQILKITRDVDLESIENGLLELEKAEFLFGSVINAVVSQAMLLLRERNLQ 997

Query: 958  LLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQF 1017
            LL DIPEEIK L + GD+ R+Q VL+DFL  +VR+APS  GWVEI V P LK I D    
Sbjct: 998  LLRDIPEEIKTLVVYGDQARIQQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTL 1057

Query: 1018 VHVQFR--LTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENS 1075
            VH++F+  L +    +P  L++DM++  ++W T EGLGL + RK+L +MNG V+Y+RE+ 
Sbjct: 1058 VHMEFKYALLNSFACLPPELVQDMFHS-SRWVTQEGLGLSMCRKILKLMNGEVQYIRESE 1116

Query: 1076 KCYFVIDLEL 1085
            +CYF++ LE+
Sbjct: 1117 RCYFLVILEV 1126


>gi|10954091|gb|AAG25725.1|AF309806_1 phytochrome B1 [Populus trichocarpa]
          Length = 1151

 Score = 1380 bits (3572), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/1090 (61%), Positives = 839/1090 (76%), Gaps = 47/1090 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            I  Y  DA L A FEQS  SGKSF+YS+SV +  + VPEEQITAYLSKIQRGG IQPFGC
Sbjct: 41   IAQYTVDAQLHAVFEQSGGSGKSFDYSQSVRTTSQSVPEEQITAYLSKIQRGGHIQPFGC 100

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGLI--GIDARTLFTPPSGASLAKAA 155
            M+AV+E +FR+I YSEN  EML L  +S    +   ++  G D RTLF P S A L KA 
Sbjct: 101  MIAVDEGSFRVIAYSENAKEMLGLTPQSVPSLDKQEILSDGTDVRTLFRPSSSAMLEKAF 160

Query: 156  ASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKL 215
             +REI LLNPI +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKL
Sbjct: 161  GAREIILLNPIWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKL 218

Query: 216  AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP 275
            AV +IS+LQ+LPGGDI LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E +R+DLEP
Sbjct: 219  AVRSISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAENKRADLEP 278

Query: 276  YLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGC 335
            Y+G+H+P+ DIPQA+RFLFKQNRVRMI DCHA PV VIQ + L QPLCLV STLR+PHGC
Sbjct: 279  YIGLHYPSTDIPQASRFLFKQNRVRMIVDCHATPVRVIQDEALMQPLCLVGSTLRAPHGC 338

Query: 336  HLQYMTNMGSIASLVMAVIINS--------KDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
            H QYM NMGSIASL MAVIIN         ++S +LWGLVVCHHTS R IPFPLRYACEF
Sbjct: 339  HAQYMANMGSIASLAMAVIINGNEEEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEF 398

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L+QAF LQL MELQ+A QL+EK++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA
Sbjct: 399  LMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAA 458

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA
Sbjct: 459  LYYQGQYYPLGVTPTEAQIKDIVEWLLALHGDSTGLSTDSLADAGYPGAASLGNAVCGMA 518

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
             A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS  WE
Sbjct: 519  VAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLLWE 578

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             +E++AIHSLQ+++RDSF+++E  N SK   + Q   +++QG+DELSSVA EMVRLIETA
Sbjct: 579  NAEMDAIHSLQLILRDSFRDVEATN-SKAVVHAQLEDTELQGMDELSSVAREMVRLIETA 637

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
            TAPIF VD  G INGWNAKVAELTGL   +AMGKSL+ ++V++E +  V+ L+ RAL GE
Sbjct: 638  TAPIFAVDVDGCINGWNAKVAELTGLSVDKAMGKSLVHDLVYKEYEETVDKLLHRALRGE 697

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            EDKNVE+KLR F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T +KV+MDK++ +
Sbjct: 698  EDKNVEIKLRTFGSEHQKKALFVVVNACSSKDYMNNIVGVCFVGQDVTGQKVVMDKYVHI 757

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY+AI+ S NPLIPPIFASDEN CC EWN AMEK TGW R EVIG             
Sbjct: 758  QGDYKAIVHSPNPLIPPIFASDENTCCLEWNTAMEKFTGWSRGEVIGKMLVGEVFGSCCQ 817

Query: 795  -----------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCF 837
                             I GQ T+  PF FF+R G++V+  LTA++R + EG+++G FCF
Sbjct: 818  LKGSDALTKFMIALHNAIGGQDTDKLPFSFFDRNGKYVQALLTANKRVNMEGEIVGAFCF 877

Query: 838  MQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQR 897
            +QI   +LQ AL+ Q  ++    A++KELAYI QE++NPL+G+RF + LLE++ ++E+Q+
Sbjct: 878  LQIASNELQQALKVQRQQEKKCSARMKELAYICQEIRNPLSGLRFTNSLLENTDLTEDQK 937

Query: 898  QYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLH 957
            Q+LETS ACE+QI+ I   +DL  IE G +EL+  EFL G++++AVVSQ M+LLR++NL 
Sbjct: 938  QFLETSAACEKQILKITRDVDLESIENGLLELEKAEFLFGSVINAVVSQAMLLLRERNLQ 997

Query: 958  LLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQF 1017
            LL DIPEEIK L + GD+ R+Q VL+DFL  +VR+APS  GWVEI V P LK I D    
Sbjct: 998  LLRDIPEEIKTLVVYGDQARIQQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTL 1057

Query: 1018 VHVQFR--LTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENS 1075
            VH++F+  L +    +P  L++DM++  ++W T EGLGL + RK+L +MNG V+Y+RE+ 
Sbjct: 1058 VHMEFKYALLNSFACLPPELVQDMFHS-SRWVTQEGLGLSMCRKILKLMNGEVQYIRESE 1116

Query: 1076 KCYFVIDLEL 1085
            +CYF++ LE+
Sbjct: 1117 RCYFLVILEV 1126


>gi|124359940|gb|ABN07956.1| GAF; Heavy metal sensor kinase [Medicago truncatula]
          Length = 1152

 Score = 1377 bits (3563), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/1109 (61%), Positives = 846/1109 (76%), Gaps = 61/1109 (5%)

Query: 36   KTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV----ISPPEGVPEEQITAYLSKIQRGG 91
            K  I  Y  DA L A FEQS   G SF+YS+S+     +  + VPE+QITAYL+KIQRGG
Sbjct: 45   KKAIAQYTEDARLHAVFEQS---GDSFDYSQSIRLTTAAHSQSVPEQQITAYLAKIQRGG 101

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-------EDFELNGL-IGIDARTLF 143
             IQPFG M+AV+EP+FR++ YSEN  +ML +  +S       ++   +G  IG D R+LF
Sbjct: 102  FIQPFGSMIAVDEPSFRVLAYSENARDMLGITPQSVPSLEDDDESSSSGFNIGTDVRSLF 161

Query: 144  TPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPA 203
            T  SG  L KA A+REISL+NPI +HS  RS  KPFY ILHRIDVG+VIDLEP++S DPA
Sbjct: 162  THSSGVLLEKAFAAREISLMNPIWIHS--RSTGKPFYGILHRIDVGVVIDLEPARSEDPA 219

Query: 204  LSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGE 263
            LS+AGAVQSQKLAV AIS+LQ+LPGGD+ +LCD VVE V++LTGYDRVM+Y FH+D+HGE
Sbjct: 220  LSIAGAVQSQKLAVRAISQLQSLPGGDVKVLCDAVVESVRELTGYDRVMVYKFHEDEHGE 279

Query: 264  VVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLC 323
            VV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V Q + L QP+C
Sbjct: 280  VVAESKRIDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPVRVFQDEALVQPVC 339

Query: 324  LVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD------------SMKLWGLVVCHH 371
            LV STLR+PHGCH QYM NMGSIASL MAVIIN  D            SM+LWGLVVCHH
Sbjct: 340  LVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEDGVGIGGTGRNSMRLWGLVVCHH 399

Query: 372  TSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIV 431
            TS R IPFPLRYACEFL+QAF LQL MELQ+A Q  EK +LRTQ LLCDMLLRD+P  IV
Sbjct: 400  TSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIV 459

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            TQSPSIMDLVKC+GAAL+Y G  + +GVTPTESQ++DI  WLL  HGD TGLSTDSLA+A
Sbjct: 460  TQSPSIMDLVKCNGAALFYQGNYYPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADA 519

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
            GYPGAA LG AVCGMA A IT KDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSS
Sbjct: 520  GYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSS 579

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVD 611
            FKAFLEVVK+RS  W+ +E++AIHSLQ+++RDSF+E  E NDSK   +T     ++QGVD
Sbjct: 580  FKAFLEVVKSRSMQWDNAEMDAIHSLQLILRDSFKEA-ENNDSKAVVHTHMAELELQGVD 638

Query: 612  ELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEE 671
            ELSSVA EMVRLIETATAPIF VD +G INGWNAKV+ELTGL   +AMGKSL+ ++V++E
Sbjct: 639  ELSSVAREMVRLIETATAPIFAVDVNGRINGWNAKVSELTGLLVEDAMGKSLLHDLVYKE 698

Query: 672  SQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVG 731
            SQ  V+ L+  AL GEEDKNVE+K+R F    Q+  V+I+VNAC+S+DY NN+ GVCFVG
Sbjct: 699  SQETVDKLLSHALKGEEDKNVEIKMRTFGPGNQNKAVFIVVNACSSKDYTNNIVGVCFVG 758

Query: 732  QDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHE 791
            QD+T +KV+MDKFI +QGDY+AI+ S N LIPPIFASD+N CC EWN AMEK++GW R +
Sbjct: 759  QDVTGQKVVMDKFINIQGDYKAIVHSPNALIPPIFASDDNTCCLEWNNAMEKLSGWSRTD 818

Query: 792  VIG------------------------------ITGQGTENFPFGFFNRQGQFVEVALTA 821
            VIG                              + GQ T+ FPF F +R G+FV+  LTA
Sbjct: 819  VIGKLLVGEVFGSFCQLKGSDAMTKFMIVLHNALGGQDTDKFPFSFVDRHGKFVQTFLTA 878

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++R + +G++IG FCF+QI+ P+LQ AL  Q  +D   +A++KELAYI QEVKNPL+GIR
Sbjct: 879  NKRVNMDGQIIGAFCFLQIVSPELQQALTVQRQQDSSCFARMKELAYICQEVKNPLSGIR 938

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F + LLES+ +++ Q+Q LETS ACE+Q++ II  +DL  I+ G++EL+  EFLL N+++
Sbjct: 939  FTNSLLESTCLTDEQKQLLETSVACEKQMLKIIRDIDLDIIDNGSLELEKREFLLENVIN 998

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
            AVVSQVM+LLR++NL L+ DIPEEIKAL++ GD++R+Q VL+DFL  VVR+APSPDGWVE
Sbjct: 999  AVVSQVMLLLRERNLQLIRDIPEEIKALAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVE 1058

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            I V P +K I D    +H +FR+  PGEG+P  LI+DM++  ++W T EGLGL +SRK++
Sbjct: 1059 IHVFPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDMFHN-SKWVTQEGLGLSMSRKII 1117

Query: 1062 IMMNGRVRYVRENSKCYFVIDLELKTRGR 1090
             +MNG V+YVRE  +CYF++ LEL    R
Sbjct: 1118 KLMNGEVQYVREAERCYFLVVLELPVTRR 1146


>gi|357448917|ref|XP_003594734.1| Phytochrome b1 [Medicago truncatula]
 gi|355483782|gb|AES64985.1| Phytochrome b1 [Medicago truncatula]
          Length = 1198

 Score = 1375 bits (3559), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/1109 (61%), Positives = 846/1109 (76%), Gaps = 61/1109 (5%)

Query: 36   KTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV----ISPPEGVPEEQITAYLSKIQRGG 91
            K  I  Y  DA L A FEQS   G SF+YS+S+     +  + VPE+QITAYL+KIQRGG
Sbjct: 45   KKAIAQYTEDARLHAVFEQS---GDSFDYSQSIRLTTAAHSQSVPEQQITAYLAKIQRGG 101

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-------EDFELNGL-IGIDARTLF 143
             IQPFG M+AV+EP+FR++ YSEN  +ML +  +S       ++   +G  IG D R+LF
Sbjct: 102  FIQPFGSMIAVDEPSFRVLAYSENARDMLGITPQSVPSLEDDDESSSSGFNIGTDVRSLF 161

Query: 144  TPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPA 203
            T  SG  L KA A+REISL+NPI +HS  RS  KPFY ILHRIDVG+VIDLEP++S DPA
Sbjct: 162  THSSGVLLEKAFAAREISLMNPIWIHS--RSTGKPFYGILHRIDVGVVIDLEPARSEDPA 219

Query: 204  LSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGE 263
            LS+AGAVQSQKLAV AIS+LQ+LPGGD+ +LCD VVE V++LTGYDRVM+Y FH+D+HGE
Sbjct: 220  LSIAGAVQSQKLAVRAISQLQSLPGGDVKVLCDAVVESVRELTGYDRVMVYKFHEDEHGE 279

Query: 264  VVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLC 323
            VV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V Q + L QP+C
Sbjct: 280  VVAESKRIDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPVRVFQDEALVQPVC 339

Query: 324  LVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD------------SMKLWGLVVCHH 371
            LV STLR+PHGCH QYM NMGSIASL MAVIIN  D            SM+LWGLVVCHH
Sbjct: 340  LVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEDGVGIGGTGRNSMRLWGLVVCHH 399

Query: 372  TSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIV 431
            TS R IPFPLRYACEFL+QAF LQL MELQ+A Q  EK +LRTQ LLCDMLLRD+P  IV
Sbjct: 400  TSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIV 459

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            TQSPSIMDLVKC+GAAL+Y G  + +GVTPTESQ++DI  WLL  HGD TGLSTDSLA+A
Sbjct: 460  TQSPSIMDLVKCNGAALFYQGNYYPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADA 519

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
            GYPGAA LG AVCGMA A IT KDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSS
Sbjct: 520  GYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSS 579

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVD 611
            FKAFLEVVK+RS  W+ +E++AIHSLQ+++RDSF+E  E NDSK   +T     ++QGVD
Sbjct: 580  FKAFLEVVKSRSMQWDNAEMDAIHSLQLILRDSFKE-AENNDSKAVVHTHMAELELQGVD 638

Query: 612  ELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEE 671
            ELSSVA EMVRLIETATAPIF VD +G INGWNAKV+ELTGL   +AMGKSL+ ++V++E
Sbjct: 639  ELSSVAREMVRLIETATAPIFAVDVNGRINGWNAKVSELTGLLVEDAMGKSLLHDLVYKE 698

Query: 672  SQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVG 731
            SQ  V+ L+  AL GEEDKNVE+K+R F    Q+  V+I+VNAC+S+DY NN+ GVCFVG
Sbjct: 699  SQETVDKLLSHALKGEEDKNVEIKMRTFGPGNQNKAVFIVVNACSSKDYTNNIVGVCFVG 758

Query: 732  QDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHE 791
            QD+T +KV+MDKFI +QGDY+AI+ S N LIPPIFASD+N CC EWN AMEK++GW R +
Sbjct: 759  QDVTGQKVVMDKFINIQGDYKAIVHSPNALIPPIFASDDNTCCLEWNNAMEKLSGWSRTD 818

Query: 792  VIG------------------------------ITGQGTENFPFGFFNRQGQFVEVALTA 821
            VIG                              + GQ T+ FPF F +R G+FV+  LTA
Sbjct: 819  VIGKLLVGEVFGSFCQLKGSDAMTKFMIVLHNALGGQDTDKFPFSFVDRHGKFVQTFLTA 878

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++R + +G++IG FCF+QI+ P+LQ AL  Q  +D   +A++KELAYI QEVKNPL+GIR
Sbjct: 879  NKRVNMDGQIIGAFCFLQIVSPELQQALTVQRQQDSSCFARMKELAYICQEVKNPLSGIR 938

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F + LLES+ +++ Q+Q LETS ACE+Q++ II  +DL  I+ G++EL+  EFLL N+++
Sbjct: 939  FTNSLLESTCLTDEQKQLLETSVACEKQMLKIIRDIDLDIIDNGSLELEKREFLLENVIN 998

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
            AVVSQVM+LLR++NL L+ DIPEEIKAL++ GD++R+Q VL+DFL  VVR+APSPDGWVE
Sbjct: 999  AVVSQVMLLLRERNLQLIRDIPEEIKALAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVE 1058

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            I V P +K I D    +H +FR+  PGEG+P  LI+DM++  ++W T EGLGL +SRK++
Sbjct: 1059 IHVFPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDMFHN-SKWVTQEGLGLSMSRKII 1117

Query: 1062 IMMNGRVRYVRENSKCYFVIDLELKTRGR 1090
             +MNG V+YVRE  +CYF++ LEL    R
Sbjct: 1118 KLMNGEVQYVREAERCYFLVVLELPVTRR 1146


>gi|357112543|ref|XP_003558068.1| PREDICTED: phytochrome B-like [Brachypodium distachyon]
          Length = 1181

 Score = 1371 bits (3548), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 667/1101 (60%), Positives = 836/1101 (75%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DAGL A FEQS ASG+SF+YS+S+++PP    E+QI AYLS+IQRGG IQPFGC
Sbjct: 72   VAQYTLDAGLHAVFEQSGASGRSFDYSQSLLAPPSTSSEQQIAAYLSRIQRGGHIQPFGC 131

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ +SEN  ++LDL        L+         +G D+R LF+PPSG  
Sbjct: 132  TLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSSAAPPPVSLGADSRLLFSPPSGVL 191

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 192  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 249

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FHDD+HGEV++E RR
Sbjct: 250  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYKFHDDEHGEVLAESRR 309

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            +DLEPYLG+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   + QPLCLV STLR
Sbjct: 310  TDLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPAMPQPLCLVGSTLR 369

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 370  SPHGCHAQYMANMGSIASLVMAVIISSGGEDEHNMGRGAIPSAMKLWGLVVCHHTSPRCI 429

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 430  PFPLRYACEFLMQAFGLQLNMELQLAYQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 489

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GA 
Sbjct: 490  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTVCHGDSTGLSTDSLADAGYSGAT 549

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 550  ALGDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 609

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 610  VVKSRSLPWENAEMDAIHSLQLILRDSFRDAREGTSNSKAIVDGQVQLGELELRGIDELS 669

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+ +++ +ES+ 
Sbjct: 670  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLTVEEAMGKSLVTDLIFKESEE 729

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             VE L+ +AL GEEDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQDI
Sbjct: 730  IVEKLLSQALRGEEDKNVEIKLKTFGPEQSKGAIFVIVNACSSRDYTKNIVGVCFVGQDI 789

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKF+ +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EVIG
Sbjct: 790  TGQKVVMDKFVNIQGDYKAIVHNPNPLIPPIFASDENICCSEWNTAMEKLTGWSRGEVIG 849

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ +E  PF FF++ G++V+  LTA+ R
Sbjct: 850  KLLVGEVFGNCCRLKGPDALTKFMIALHNAIGGQDSEKLPFSFFDKNGKYVQALLTANTR 909

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q  ++   YA++KELAYI QE+KNPL+GIRF +
Sbjct: 910  SKMDGEAIGAFCFLQIASPELQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTN 969

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LGN+++AVV
Sbjct: 970  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQRIEDGSLVLEKGEFSLGNVMNAVV 1029

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+LLR+++L L+ DIP+EIK  S  GD+ R+Q VLSDFL  +VR AP+ +GWVEI+V
Sbjct: 1030 SQVMILLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLSDFLLSMVRFAPTENGWVEIQV 1089

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D  + +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1090 RPNVKQNSDGTETMLFLFRFACPGEGLPPDIVQDMFSN-SRWTTQEGIGLSVCRKILKLM 1148

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F+I LEL
Sbjct: 1149 GGEVQYIRESERSFFLIVLEL 1169


>gi|6502525|gb|AAF14344.1|AF069305_1 phytochrome B [Pisum sativum]
          Length = 1121

 Score = 1369 bits (3544), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/1106 (60%), Positives = 836/1106 (75%), Gaps = 58/1106 (5%)

Query: 36   KTIIDHYNADAGLLAEFEQSVASGKSFNYSRS--VISPPEGVPEEQITAYLSKIQRGGLI 93
            +  I  Y  DA L A FE+S   G SF+Y++S  V +  E VPE+QITAYL+KIQRGG I
Sbjct: 17   RKAIAQYTEDAXLHAVFEKS---GDSFDYAQSIRVTAATESVPEQQITAYLAKIQRGGFI 73

Query: 94   QPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----ED---FELNGLIGIDARTLFTPP 146
            QPFG M+AV+E +FR++ YSEN  +ML +  +S    ED         +G+D R+LF+  
Sbjct: 74   QPFGSMIAVDETSFRVLAYSENARDMLGIAPQSVPSMEDDSSSSSFFSLGVDVRSLFSAS 133

Query: 147  SGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSL 206
            S   L KA ++REISL+NPI +HS  RS  KPFY ILHRID+G+VIDLEP++S DPALS+
Sbjct: 134  SSVLLEKAFSAREISLMNPIWIHS--RSTGKPFYGILHRIDIGVVIDLEPARSEDPALSI 191

Query: 207  AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
            AGAVQSQKLAV AIS+LQALPGGD+ LLCD VVE V++LTGYDRVM+Y FH+D+HGEVV+
Sbjct: 192  AGAVQSQKLAVRAISQLQALPGGDVKLLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVA 251

Query: 267  EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
            E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V Q + L QP+CLV 
Sbjct: 252  ESKRVDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPVRVFQDEALVQPVCLVG 311

Query: 327  STLRSPHGCHLQYMTNMGSIASLVMAVIINSKD------------SMKLWGLVVCHHTSP 374
            STLR+PHGCH QYM NMGSIASL MAVIIN  D            SM+LWGLVVCHHTS 
Sbjct: 312  STLRAPHGCHAQYMANMGSIASLAMAVIINGNDEDGGGIGGAARGSMRLWGLVVCHHTSA 371

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            R IPFPLRYACEFL+QAF LQL MELQ+A+Q  EK +L+TQ LLCDMLLRD+   IVTQS
Sbjct: 372  RCIPFPLRYACEFLMQAFGLQLNMELQLAVQSLEKRVLKTQTLLCDMLLRDSHTGIVTQS 431

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYP 494
            PSIMDLVKCDGAALYY G    +GVTPTESQ++DI  WLL  H D TGLSTDSLA+AGYP
Sbjct: 432  PSIMDLVKCDGAALYYQGNYHPLGVTPTESQIRDIIDWLLAFHSDSTGLSTDSLADAGYP 491

Query: 495  GAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKA 554
            GAA LG AVCGMA A IT KDFLFWFRSHTAKE+KWGGAKHHPE KD+G KMHPRSSFKA
Sbjct: 492  GAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQKMHPRSSFKA 551

Query: 555  FLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELS 614
            FLEVVK RS  W+ +E++AIHSLQ+++RDSF+E  E NDSK   +T     ++QGVDELS
Sbjct: 552  FLEVVKIRSMQWDNAEMDAIHSLQLILRDSFKE-AENNDSKAVVHTHMAELELQGVDELS 610

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETATAPIF VD  G INGWNAKV+ELTGL   EAMGKSL+ ++V++ES+ 
Sbjct: 611  SVAREMVRLIETATAPIFAVDVDGRINGWNAKVSELTGLLVEEAMGKSLVHDLVYKESRE 670

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V+ L+  AL GEEDKNVE+K++ F    Q+  V+I+VNAC+S+DY NN+ GVCFVGQDI
Sbjct: 671  TVDKLLSHALKGEEDKNVEIKMKTFGPGNQNKAVFIVVNACSSKDYTNNIVGVCFVGQDI 730

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ S NPLIPPIFASD+N CC EWN AMEK++GW R +VIG
Sbjct: 731  TGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNNAMEKLSGWSRADVIG 790

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          + G  T+ FP  F +R G++V   LTA++R
Sbjct: 791  KLLVGEVFGSFCQLKGSDAMTKFMIVLHNALGGHDTDKFPLSFLDRHGKYVHTFLTANKR 850

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
             + +G++IG FCF+QI+ P+LQ AL  Q  +D    A++KELAYI QEVKNPL+GIRF +
Sbjct: 851  VNMDGQIIGAFCFLQIVNPELQQALTVQRQQDSSSLARMKELAYICQEVKNPLSGIRFTN 910

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLES+ +++ Q+Q LETS ACE+Q++ I+  + L  IE+G++EL+ +EFLL N+++AVV
Sbjct: 911  SLLESTCLTDEQKQLLETSVACEKQMLKIVRDIALESIEDGSLELEKQEFLLENVINAVV 970

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+LLRD+ L L+ DIPEEIKAL++ GD++R+Q VL+DFL  VVR+APSPDGWVEI V
Sbjct: 971  SQVMLLLRDRKLQLIRDIPEEIKALAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVEIHV 1030

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K I +    +H +FR+  PGEG+P  LI+DM++  ++W T EGLGL +SRK++ +M
Sbjct: 1031 FPRIKQISEGLTLLHAEFRMVCPGEGLPPELIQDMFHN-SRWVTQEGLGLSMSRKIIKLM 1089

Query: 1065 NGRVRYVRENSKCYFVIDLELKTRGR 1090
            NG V+YVRE  +CYF++ LEL    R
Sbjct: 1090 NGEVQYVREAERCYFLVLLELPVTRR 1115


>gi|57791636|gb|AAW56586.1| phytochrome B [Arabidopsis thaliana]
          Length = 1168

 Score = 1367 bits (3537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/1130 (59%), Positives = 844/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 23   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 80

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML L 
Sbjct: 81   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGLM 140

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 141  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 197

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVV
Sbjct: 198  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVV 257

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 258  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 317

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 318  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 377

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 378  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 437

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 438  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 497

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 498  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 557

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 558  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 617

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 618  EAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 677

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 678  KIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFSPELQG 737

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
              V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 738  KAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 797

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------I 795
            FA+DEN CC EWN AMEK+TGW R EVIG                              I
Sbjct: 798  FAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 857

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 858  GGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQ 917

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  I+ 
Sbjct: 918  DTECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIVG 977

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 978  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1037

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    KL+ D    +  +FR+  PGEG+P  L
Sbjct: 1038 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVSKLMADGFAAIRTEFRMACPGEGLPPEL 1096

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1097 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1145


>gi|57791642|gb|AAW56589.1| phytochrome B [Arabidopsis thaliana]
          Length = 1158

 Score = 1365 bits (3533), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/1130 (59%), Positives = 843/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 20   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 77

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML L 
Sbjct: 78   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGLM 137

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 138  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 194

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVV
Sbjct: 195  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVV 254

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 255  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 314

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 315  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 374

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 375  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 434

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 435  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 494

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 495  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 554

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 555  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 614

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 615  EAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 674

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 675  KIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFSPELQG 734

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
              V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 735  KAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 794

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------I 795
            FA+DEN CC EWN AMEK+TGW R EVIG                              I
Sbjct: 795  FAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 854

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 855  GGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQ 914

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  II 
Sbjct: 915  DTECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIIG 974

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 975  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1034

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L
Sbjct: 1035 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVSKQMADGFAAIRTEFRMACPGEGLPPEL 1093

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1094 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1142


>gi|39939388|gb|AAR32737.1| phytochrome B [Arabidopsis thaliana]
 gi|164597996|gb|ABY61305.1| phytochrome B [Arabidopsis thaliana]
 gi|164597998|gb|ABY61306.1| phytochrome B [Arabidopsis thaliana]
 gi|164598004|gb|ABY61309.1| phytochrome B [Arabidopsis thaliana]
 gi|164598006|gb|ABY61310.1| phytochrome B [Arabidopsis thaliana]
          Length = 1168

 Score = 1364 bits (3531), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/1130 (59%), Positives = 843/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 23   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 80

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML L 
Sbjct: 81   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGLM 140

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 141  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 197

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVV
Sbjct: 198  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVV 257

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 258  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 317

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 318  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 377

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 378  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 437

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 438  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 497

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 498  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 557

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 558  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 617

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 618  EAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 677

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 678  KIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFSPELQG 737

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
              V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 738  KAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 797

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------I 795
            FA+DEN CC EWN AMEK+TGW R EVIG                              I
Sbjct: 798  FAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 857

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 858  GGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQ 917

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  II 
Sbjct: 918  DTECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIIG 977

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 978  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1037

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L
Sbjct: 1038 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVSKQMADGFAAIRTEFRMACPGEGLPPEL 1096

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1097 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1145


>gi|57791644|gb|AAW56590.1| phytochrome B [Arabidopsis thaliana]
          Length = 1168

 Score = 1364 bits (3531), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/1130 (59%), Positives = 843/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 23   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 80

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML L 
Sbjct: 81   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGLM 140

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 141  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 197

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVV
Sbjct: 198  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVV 257

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 258  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 317

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 318  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 377

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 378  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 437

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 438  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 497

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 498  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 557

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 558  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 617

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 618  EAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 677

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 678  KIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFSPELQG 737

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
              V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 738  KAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 797

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------I 795
            FA+DEN CC EWN AMEK+TGW R EVIG                              I
Sbjct: 798  FAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 857

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 858  GGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQ 917

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  II 
Sbjct: 918  DTECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIIG 977

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 978  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1037

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L
Sbjct: 1038 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVSKQMADGFAAIRTEFRMACPGEGLPPEL 1096

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1097 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1145


>gi|164597988|gb|ABY61301.1| phytochrome B [Arabidopsis thaliana]
          Length = 1168

 Score = 1364 bits (3530), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/1130 (58%), Positives = 845/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 23   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 80

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML L 
Sbjct: 81   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGLM 140

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 141  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 197

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVV
Sbjct: 198  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVV 257

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 258  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 317

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 318  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 377

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 378  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 437

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 438  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 497

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 498  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 557

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 558  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 617

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E + +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 618  EADMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 677

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 678  KIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFTPELQG 737

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
            + V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 738  TAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 797

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------I 795
            FA+DEN CC EWN AMEK+TGW R EVIG                              I
Sbjct: 798  FAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 857

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 858  GGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQ 917

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  I+ 
Sbjct: 918  DTECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIVG 977

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 978  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1037

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L
Sbjct: 1038 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVSKQMADGFAAIRTEFRMACPGEGLPPEL 1096

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1097 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1145


>gi|57791624|gb|AAW56580.1| phytochrome B [Arabidopsis thaliana]
 gi|57791626|gb|AAW56581.1| phytochrome B [Arabidopsis thaliana]
 gi|57791628|gb|AAW56582.1| phytochrome B [Arabidopsis thaliana]
 gi|57791630|gb|AAW56583.1| phytochrome B [Arabidopsis thaliana]
 gi|57791632|gb|AAW56584.1| phytochrome B [Arabidopsis thaliana]
 gi|57791634|gb|AAW56585.1| phytochrome B [Arabidopsis thaliana]
 gi|164597990|gb|ABY61302.1| phytochrome B [Arabidopsis thaliana]
 gi|164597992|gb|ABY61303.1| phytochrome B [Arabidopsis thaliana]
 gi|164597994|gb|ABY61304.1| phytochrome B [Arabidopsis thaliana]
 gi|164598008|gb|ABY61311.1| phytochrome B [Arabidopsis thaliana]
 gi|164598012|gb|ABY61313.1| phytochrome B [Arabidopsis thaliana]
 gi|164598018|gb|ABY61316.1| phytochrome B [Arabidopsis thaliana]
 gi|164598020|gb|ABY61317.1| phytochrome B [Arabidopsis thaliana]
          Length = 1168

 Score = 1364 bits (3530), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 667/1130 (59%), Positives = 843/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 23   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 80

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML L 
Sbjct: 81   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGLM 140

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 141  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 197

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVV
Sbjct: 198  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVV 257

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 258  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 317

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 318  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 377

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 378  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 437

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 438  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 497

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 498  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 557

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 558  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 617

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 618  EAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 677

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 678  KIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFSPELQG 737

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
              V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 738  KAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 797

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------I 795
            FA+DEN CC EWN AMEK+TGW R EVIG                              I
Sbjct: 798  FAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 857

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 858  GGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQ 917

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  I+ 
Sbjct: 918  DTECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIVG 977

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 978  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1037

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L
Sbjct: 1038 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVSKQMADGFAAIRTEFRMACPGEGLPPEL 1096

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1097 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1145


>gi|312282447|dbj|BAJ34089.1| unnamed protein product [Thellungiella halophila]
          Length = 1172

 Score = 1364 bits (3530), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1127 (58%), Positives = 841/1127 (74%), Gaps = 55/1127 (4%)

Query: 6    NRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYS 65
            NR       G  +  P     +    ++K    I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 32   NRREQAQSSGTKSLRPQNQPQSHTDSMSKA---IQQYTVDARLHAVFEQSGESGKSFDYS 88

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E TFRIIGYSEN  EML L 
Sbjct: 89   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESTFRIIGYSENAREMLGLT 148

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 149  PQSVPSLEKPEILAM-GTDVRSLFTASSSILLERAFVAREITLLNPVWIHS--KNTGKPF 205

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVV
Sbjct: 206  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVV 265

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E RR DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 266  ESVRDLTGYDRVMVYKFHEDEHGEVVAESRRDDLEPYIGLHYPATDIPQASRFLFKQNRV 325

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DCHA PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 326  RMIVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 385

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     ++SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 386  DDGSNVAGGRNSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 445

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV PTE+Q+KD
Sbjct: 446  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPTEAQIKD 505

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 506  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 565

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAK HPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 566  KWGGAKRHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 625

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E   +SK      Q  +  QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+A
Sbjct: 626  EAALNSKTADGAVQCMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIA 685

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ +++++E++  V+ L+ RAL GEEDKNVE+KL+ F  + Q   V
Sbjct: 686  ELTGLSVEEAMGKSLVSDLIYKENEETVDKLLSRALRGEEDKNVEVKLKTFSPELQGKAV 745

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+
Sbjct: 746  FVVVNACSSKDYLNNIVGVCFVGQDVTDQKIVMDKFINIQGDYKAIVHSPNPLIPPIFAA 805

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AME +TGW R EVIG                              I GQ
Sbjct: 806  DENTCCLEWNTAMENLTGWSRSEVIGKMLVGEVFGSCCRLKGPDAITKFMIVLHNAIGGQ 865

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+ FPF FF+R+G+FV+  LTA++R   +GKVIG FCF+QI  P+LQ A+  Q  +D +
Sbjct: 866  ETDKFPFPFFDRKGKFVQALLTANKRVSLDGKVIGAFCFVQIPSPELQQAIAVQRRQDTE 925

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q+LETS +CE+QI  I+  MD
Sbjct: 926  CFTKAKELAYICQVIKNPLSGLRFTNSLLEATDLNEDQKQFLETSVSCEKQISRIVSDMD 985

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE+G+ +L+  EF LG++++A+VSQ M LL+++ L L+ DIPEEIK++++ GD+ R+
Sbjct: 986  LEGIEDGSFKLERVEFFLGSVINAIVSQAMFLLKERGLQLIRDIPEEIKSIAVYGDQTRI 1045

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIED 1038
            Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L+ D
Sbjct: 1046 QQLLAEFLLSIIRYAPSQE-WVEIHLNQVSKQMADGFSAIRTEFRMACPGEGLPPELVRD 1104

Query: 1039 MYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            M++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1105 MFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1150


>gi|164597986|gb|ABY61300.1| phytochrome B [Arabidopsis thaliana]
          Length = 1168

 Score = 1364 bits (3530), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 667/1130 (59%), Positives = 843/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 23   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 80

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML L 
Sbjct: 81   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGLM 140

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 141  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 197

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVV
Sbjct: 198  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVV 257

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 258  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 317

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 318  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 377

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 378  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 437

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 438  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 497

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 498  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 557

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 558  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 617

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 618  EAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 677

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 678  KIAELTGLSVEEAMGKSLVSDLIYKENKATVNKLLSRALRGDEEKNVEVKLKTFSPELQG 737

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
              V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 738  KAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 797

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------I 795
            FA+DEN CC EWN AMEK+TGW R EVIG                              I
Sbjct: 798  FAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 857

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 858  GGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQ 917

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  I+ 
Sbjct: 918  DTECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIVG 977

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 978  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1037

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L
Sbjct: 1038 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVSKQMADGFAAIRTEFRMACPGEGLPPEL 1096

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1097 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1145


>gi|57791618|gb|AAW56577.1| phytochrome B [Arabidopsis thaliana]
          Length = 1162

 Score = 1363 bits (3527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/1130 (58%), Positives = 843/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 24   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 81

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML + 
Sbjct: 82   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGIM 141

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 142  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 198

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVV
Sbjct: 199  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVV 258

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 259  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 318

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 319  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 378

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 379  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 438

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 439  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 498

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 499  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 558

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 559  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 618

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 619  EAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 678

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 679  KIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFSPELQG 738

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
              V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 739  KAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 798

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------I 795
            FA+DEN CC EWN AMEK+TGW R EVIG                              I
Sbjct: 799  FAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 858

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 859  GGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQ 918

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  I+ 
Sbjct: 919  DTECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIVG 978

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 979  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1038

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L
Sbjct: 1039 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQLSKQMADGFAAIRTEFRMACPGEGLPPEL 1097

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1098 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1146


>gi|57791620|gb|AAW56578.1| phytochrome B [Arabidopsis thaliana]
 gi|57791622|gb|AAW56579.1| phytochrome B [Arabidopsis thaliana]
 gi|164598016|gb|ABY61315.1| phytochrome B [Arabidopsis thaliana]
 gi|164598022|gb|ABY61318.1| phytochrome B [Arabidopsis thaliana]
          Length = 1168

 Score = 1363 bits (3527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/1130 (58%), Positives = 843/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 23   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 80

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML + 
Sbjct: 81   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGIM 140

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 141  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 197

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVV
Sbjct: 198  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVV 257

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 258  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 317

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 318  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 377

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 378  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 437

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 438  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 497

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 498  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 557

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 558  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 617

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 618  EAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 677

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 678  KIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFSPELQG 737

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
              V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 738  KAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 797

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------I 795
            FA+DEN CC EWN AMEK+TGW R EVIG                              I
Sbjct: 798  FAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 857

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 858  GGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQ 917

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  I+ 
Sbjct: 918  DTECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIVG 977

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 978  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1037

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L
Sbjct: 1038 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQLSKQMADGFAAIRTEFRMACPGEGLPPEL 1096

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1097 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1145


>gi|15224231|ref|NP_179469.1| phytochrome B [Arabidopsis thaliana]
 gi|130189|sp|P14713.1|PHYB_ARATH RecName: Full=Phytochrome B
 gi|16423|emb|CAA35222.1| unnamed protein product [Arabidopsis thaliana]
 gi|4185145|gb|AAD08948.1| phytochrome B [Arabidopsis thaliana]
 gi|330251714|gb|AEC06808.1| phytochrome B [Arabidopsis thaliana]
          Length = 1172

 Score = 1363 bits (3527), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/1130 (58%), Positives = 843/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 27   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 84

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML + 
Sbjct: 85   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGIM 144

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 145  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 201

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVV
Sbjct: 202  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVV 261

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 262  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 321

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 322  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 381

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 382  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 441

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 442  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 501

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 502  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 561

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 562  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 621

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 622  EAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 681

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 682  KIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFSPELQG 741

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
              V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 742  KAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 801

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------I 795
            FA+DEN CC EWN AMEK+TGW R EVIG                              I
Sbjct: 802  FAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 861

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 862  GGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQ 921

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  I+ 
Sbjct: 922  DTECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIVG 981

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 982  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1041

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L
Sbjct: 1042 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQLSKQMADGFAAIRTEFRMACPGEGLPPEL 1100

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1101 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1149


>gi|164598000|gb|ABY61307.1| phytochrome B [Arabidopsis thaliana]
 gi|164598002|gb|ABY61308.1| phytochrome B [Arabidopsis thaliana]
 gi|164598010|gb|ABY61312.1| phytochrome B [Arabidopsis thaliana]
          Length = 1168

 Score = 1362 bits (3526), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/1130 (58%), Positives = 843/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 23   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 80

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML L 
Sbjct: 81   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGLM 140

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 141  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 197

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVV
Sbjct: 198  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVV 257

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 258  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 317

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 318  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 377

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 378  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 437

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 438  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 497

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 498  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 557

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 558  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 617

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 618  EAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 677

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 678  KIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFTPELQG 737

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
              V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 738  KAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 797

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------I 795
            FA+DEN CC EWN AMEK+TGW R EVIG                              I
Sbjct: 798  FAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 857

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 858  GGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQ 917

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  I+ 
Sbjct: 918  DTECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIVG 977

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 978  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1037

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L
Sbjct: 1038 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVSKQMADGFAAIRTEFRMACPGEGLPPEL 1096

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1097 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1145


>gi|57791616|gb|AAW56576.1| phytochrome B [Arabidopsis thaliana]
          Length = 1158

 Score = 1362 bits (3525), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/1130 (58%), Positives = 843/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 20   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 77

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML + 
Sbjct: 78   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGIM 137

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 138  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 194

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVV
Sbjct: 195  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVV 254

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 255  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 314

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 315  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 374

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 375  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 434

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 435  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 494

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 495  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 554

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 555  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 614

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 615  EAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 674

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 675  KIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFSPELQG 734

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
              V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 735  KAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 794

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------I 795
            FA+DEN CC EWN AMEK+TGW R EVIG                              I
Sbjct: 795  FAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 854

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 855  GGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQ 914

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  I+ 
Sbjct: 915  DTECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIVG 974

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 975  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1034

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L
Sbjct: 1035 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQLSKQMADGFAAIRTEFRMACPGEGLPPEL 1093

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1094 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1142


>gi|164598014|gb|ABY61314.1| phytochrome B [Arabidopsis thaliana]
          Length = 1168

 Score = 1362 bits (3525), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/1130 (58%), Positives = 842/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 23   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 80

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML L 
Sbjct: 81   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGLM 140

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 141  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 197

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVV
Sbjct: 198  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVV 257

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 258  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 317

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 318  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 377

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 378  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 437

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 438  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 497

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 498  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 557

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 558  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 617

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 618  EAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 677

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 678  KIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFSPELQG 737

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
              V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 738  KAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 797

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------I 795
            FA+DEN CC EWN AMEK+TGW R EVIG                              I
Sbjct: 798  FAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 857

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 858  GGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQ 917

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+R  + LLE++ ++E+Q+Q LETS +CE+QI  I+ 
Sbjct: 918  DTECFTKAKELAYICQVIKNPLSGMRLANSLLEATDLNEDQKQLLETSVSCEKQISRIVG 977

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 978  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1037

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L
Sbjct: 1038 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVSKQMADGFAAIRTEFRMACPGEGLPPEL 1096

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1097 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1145


>gi|57791640|gb|AAW56588.1| phytochrome B [Arabidopsis thaliana]
          Length = 1161

 Score = 1361 bits (3523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/1130 (58%), Positives = 842/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 22   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 79

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML L 
Sbjct: 80   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGLM 139

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 140  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 196

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVV
Sbjct: 197  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVV 256

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 257  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 316

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 317  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 376

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 377  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 436

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 437  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 496

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 497  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 556

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 557  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 616

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 617  EAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 676

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 677  KIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFSPELQG 736

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
              V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 737  KAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 796

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVI------------------------------GI 795
            FA+DEN CC EWN AMEK+TGW R EVI                               I
Sbjct: 797  FAADENTCCLEWNMAMEKLTGWSRSEVIEKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 856

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 857  GGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQ 916

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  I+ 
Sbjct: 917  DTECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIVG 976

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 977  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1036

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L
Sbjct: 1037 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVSKQMADGFAAIRTEFRMACPGEGLPPEL 1095

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1096 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1144


>gi|57791638|gb|AAW56587.1| phytochrome B [Arabidopsis thaliana]
          Length = 1158

 Score = 1361 bits (3522), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/1130 (58%), Positives = 842/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 20   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 77

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML L 
Sbjct: 78   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGLM 137

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 138  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 194

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVV
Sbjct: 195  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVV 254

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 255  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 314

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 315  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 374

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 375  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 434

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 435  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 494

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 495  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 554

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 555  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 614

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 615  EAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 674

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 675  KIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFSPELQG 734

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
              V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 735  KAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 794

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------I 795
            FA+DEN CC EWN AMEK+TGW R EVIG                              I
Sbjct: 795  FAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 854

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 855  GGQDTDKFPFPFFDRNGKFVQALLTANKRVSLEGKVIGAFCFLQIPSPELQQALAVQRRQ 914

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+R  + LLE++ ++E+Q+Q LETS +CE+QI  I+ 
Sbjct: 915  DTECFTKAKELAYICQVIKNPLSGMRLANSLLEATDLNEDQKQLLETSVSCEKQISRIVG 974

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 975  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1034

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L
Sbjct: 1035 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVSKQMADGFAAIRTEFRMACPGEGLPPEL 1093

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1094 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1142


>gi|57791614|gb|AAW56575.1| phytochrome B [Arabidopsis thaliana]
          Length = 1162

 Score = 1361 bits (3522), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/1130 (58%), Positives = 843/1130 (74%), Gaps = 60/1130 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTI---IDHYNADAGLLAEFEQSVASGKSFNYS 65
            T N+  GG       S    ++P +  +++   I  Y  DA L A FEQS  SGKSF+YS
Sbjct: 24   TPNNRRGGEQAQ--SSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYS 81

Query: 66   RSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR 123
            +S+ +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML + 
Sbjct: 82   QSLKTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGIM 141

Query: 124  SRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPF 179
             +S    E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPF
Sbjct: 142  PQSVPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPF 198

Query: 180  YAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
            YAILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVV
Sbjct: 199  YAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVV 258

Query: 240  EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
            E V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRV
Sbjct: 259  ESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRV 318

Query: 300  RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
            RMI DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN   
Sbjct: 319  RMIVDCNATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNE 378

Query: 358  ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                     + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 379  DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSE 438

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD
Sbjct: 439  KRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKD 498

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            +  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+
Sbjct: 499  VVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEI 558

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 559  KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKES 618

Query: 589  EEENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
            E   +SKV     Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA
Sbjct: 619  EAAMNSKVVDGVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNA 678

Query: 646  KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
            K+AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q 
Sbjct: 679  KIAELTGLSVEEAMGKSLVSDLIYKENEATVNKLLSRALRGDEEKNVEVKLKTFSPELQG 738

Query: 706  SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
              V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPI
Sbjct: 739  KAVFVVVNACSSKDYLNNIVGVCFVGQDVTSQKIVMDKFINIQGDYKAIVHSPNPLIPPI 798

Query: 766  FASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------I 795
            FA+DEN CC EWN AMEK+TGW R EVIG                              I
Sbjct: 799  FAADENTCCLEWNMAMEKLTGWSRSEVIGKMIVGEVFGSCCMLKGPDALTKFMIVLHNAI 858

Query: 796  TGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLE 855
             GQ T+ FPF FF+R G+FV+  LTA++R   EGKVIG FCF+QI  P+LQ AL  Q  +
Sbjct: 859  GGQDTDKFPFPFFDRNGKFVQALLTANKRVILEGKVIGAFCFLQIPSPELQQALAVQRRQ 918

Query: 856  DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            D + + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  I+ 
Sbjct: 919  DTECFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIVG 978

Query: 916  GMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDR 975
             MDL  IE+G+  LK EEF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+
Sbjct: 979  DMDLESIEDGSFVLKREEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIEVFGDQ 1038

Query: 976  IRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035
            IR+Q +L++FL  ++R+APS + WVEI +    K + D    +  +FR+  PGEG+P  L
Sbjct: 1039 IRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQLSKQMADGFAAIRTEFRMACPGEGLPPEL 1097

Query: 1036 IEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF+I LEL
Sbjct: 1098 VRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFLIILEL 1146


>gi|255642598|gb|ACU21558.1| phytochrome B [Medicago sativa]
          Length = 1061

 Score = 1360 bits (3520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1065 (61%), Positives = 822/1065 (77%), Gaps = 54/1065 (5%)

Query: 76   PEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-------ED 128
            PE+QITAYL+KIQRGG IQPFG M+AV+EP+FR++ Y+EN  +ML +  +S       ++
Sbjct: 1    PEQQITAYLAKIQRGGFIQPFGSMIAVDEPSFRVLAYNENARDMLGITPQSVPSLEDDDE 60

Query: 129  FELNGL-IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
               +G  IG D R+LFT  SG  L KA ++REISL+NPI +HS  RS  KPFY ILHRID
Sbjct: 61   SSSSGFNIGTDVRSLFTHSSGVLLEKAFSAREISLMNPIWIHS--RSTGKPFYGILHRID 118

Query: 188  VGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTG 247
            VG+VIDLEP++S DPALS+AGAVQSQKLAV AIS+LQ+LPGGD+ +LCD VVE V++LTG
Sbjct: 119  VGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKVLCDAVVESVRELTG 178

Query: 248  YDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHA 307
            YDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A
Sbjct: 179  YDRVMVYKFHEDEHGEVVAESKRIDLEPYMGLHYPATDIPQASRFLFKQNRVRMIVDCNA 238

Query: 308  IPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-------- 359
             PV V Q + L QP+CLV STLR+PHGCH QYM NMGSIASL MAVIIN  D        
Sbjct: 239  SPVRVFQDEALVQPVCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEDGVGIGG 298

Query: 360  ----SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQ 415
                SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A Q +EK +LRTQ
Sbjct: 299  TGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSSEKRVLRTQ 358

Query: 416  VLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLN 475
             LLCDMLLRD+P  IVTQSPSIMDLVKCDGAAL+Y G  + +GVTPTESQ++DI  WLL 
Sbjct: 359  TLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALFYQGNYYPLGVTPTESQIRDIIEWLLA 418

Query: 476  NHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKH 535
             HGD TGLSTDSLA+AGYPGAA LG AVCGMA A IT KDFLFWFRSHTAKE+KWGGAKH
Sbjct: 419  FHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKH 478

Query: 536  HPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK 595
            HPE KD+G +MHPRSSFKAFLEVVK+RS  W+ +E++AIHSLQ+++RDSF+E  E NDSK
Sbjct: 479  HPEDKDDGQRMHPRSSFKAFLEVVKSRSMQWDNAEMDAIHSLQLILRDSFKE-AENNDSK 537

Query: 596  VQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPA 655
               +T     ++QGVDELSSVA EMVRLIETATAPIF VD +G INGWNAKV+ELTGL  
Sbjct: 538  AVVHTHMAELELQGVDELSSVAREMVRLIETATAPIFAVDVNGRINGWNAKVSELTGLLV 597

Query: 656  SEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNAC 715
             +AMGKSL+ ++V++ESQ  V+ L+  AL GEEDKNVE+K+R F    Q+  V+I+VNAC
Sbjct: 598  EDAMGKSLLHDLVYKESQETVDKLLSHALKGEEDKNVEIKMRTFGPGNQNKAVFIVVNAC 657

Query: 716  TSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCS 775
            +S+DY NN+ GVCFVGQD+T +KV+MDKFI +QGDY+AI+ S N LIPPIFASD+N CC 
Sbjct: 658  SSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNALIPPIFASDDNTCCL 717

Query: 776  EWNAAMEKVTGWMRHEVIG------------------------------ITGQGTENFPF 805
            EWN AMEK++GW R +VIG                              + GQ T+ FPF
Sbjct: 718  EWNNAMEKLSGWSRTDVIGKLLVGEVFGSFCQLKGSDAMTKFMIVLHNALGGQDTDEFPF 777

Query: 806  GFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKE 865
             F +R G++V+  LTA++R + +G++IG FCF+QI+ P+LQ AL  Q  +D   +A++KE
Sbjct: 778  SFVDRHGKYVQTFLTANKRVNIDGQIIGAFCFLQIVSPELQQALTVQRQQDSSCFARMKE 837

Query: 866  LAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEG 925
            LAYI QEVKNPL+GIRF + LLES+ +++ Q+Q LETS ACE+Q++ II  +DL  I++G
Sbjct: 838  LAYICQEVKNPLSGIRFTNSLLESTCLTDEQKQLLETSAACEKQMLKIIRDIDLDSIDDG 897

Query: 926  NMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDF 985
            ++ L+ +EFLL N+++AVVSQVM+LLR++NL L+ DIPEEIK L++ GD++R Q  L+DF
Sbjct: 898  SLALEKQEFLLENVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRFQQALADF 957

Query: 986  LHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ 1045
            L  VVR+APSPDGWVEI V P +K I D    +H +FR+  PGEG+P  LI+DM++  ++
Sbjct: 958  LMNVVRYAPSPDGWVEIHVFPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDMFHN-SK 1016

Query: 1046 WTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRGR 1090
            W T EGLGL +SRK++ +MNG V+YVRE  +CYF++ LEL    R
Sbjct: 1017 WVTQEGLGLSMSRKIIKLMNGEVQYVREAERCYFLVVLELPVTRR 1061


>gi|240119405|dbj|BAH79251.1| phytochrome B [Cardamine resedifolia]
          Length = 1184

 Score = 1359 bits (3518), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 663/1097 (60%), Positives = 833/1097 (75%), Gaps = 55/1097 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEG--VPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ +   G  VPE+QITAYLS+IQRGG IQPF
Sbjct: 67   IQQYTVDARLHAVFEQSGGSGKSFDYSQSLKTTTYGSSVPEQQITAYLSRIQRGGFIQPF 126

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GCM+AV+E TFRIIGYSEN  EML L  +S    E  E+  + G D R+LF P S   L 
Sbjct: 127  GCMIAVDESTFRIIGYSENAREMLGLMPQSVPSLEKPEILAM-GTDVRSLFAPSSSILLE 185

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +REI+LLNP+ +HS  ++  KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQS
Sbjct: 186  RAFVAREITLLNPVWIHS--KNTGKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQS 243

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AISRLQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R D
Sbjct: 244  QKLAVRAISRLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDD 303

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV+++Q   L Q +CLV STLR+P
Sbjct: 304  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVLLVQDDRLSQSMCLVGSTLRAP 363

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCHHTSPRYIPFPL 381
            HGCH QYM NMGSIASL MAVIIN            ++SMKLWGLVVCHHTS R IPFPL
Sbjct: 364  HGCHSQYMANMGSIASLAMAVIINGNEEDGRNAGGGRNSMKLWGLVVCHHTSSRCIPFPL 423

Query: 382  RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
            RYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQSPSIMDLV
Sbjct: 424  RYACEFLMQAFGLQLNMELQLALQMSEKRVLRMQTLLCDMLLRDSPAGIVTQSPSIMDLV 483

Query: 442  KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
            KCDGAA  Y G+ + +GV PTE+Q+KDI  WLL NH D TGLSTDSL +AGYPGAA LG 
Sbjct: 484  KCDGAAFLYHGKYYPLGVAPTEAQIKDIVDWLLANHADSTGLSTDSLGDAGYPGAAALGD 543

Query: 502  AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
            AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+
Sbjct: 544  AVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKS 603

Query: 562  RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK-VQGNTQ--QNGSKMQGVDELSSVAC 618
            RS PWE +E++AIHSLQ+++RDSF+E E   +SK V G  Q  ++ S  QG+DEL +VA 
Sbjct: 604  RSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKAVDGAVQPCRDMSGEQGIDELGAVAR 663

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+ +++++E++  V  
Sbjct: 664  EMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEETVNK 723

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            L+ RAL GEEDKNVELKL+ F  + Q   V+++VNAC+S+DY NN+ GVCFVGQD+T +K
Sbjct: 724  LLSRALKGEEDKNVELKLKTFSPELQGKAVFMIVNACSSKDYLNNIVGVCFVGQDVTGQK 783

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794
            ++MDKFI +QGDY+AI+ S NPLIPPIFA+DEN  C EWNAA+EK+TG  R EVIG    
Sbjct: 784  IVMDKFINIQGDYKAIVHSPNPLIPPIFAADENTICLEWNAALEKLTGVSRGEVIGKMLV 843

Query: 795  --------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAE 828
                                      I GQ T+ FPF FF+R G+FV+  LTA++R   +
Sbjct: 844  GEVFGNCCRLKGPDALTRFMIVLHNAIGGQETDKFPFPFFDRNGKFVQALLTANKRVSLD 903

Query: 829  GKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLE 888
            GKVIG FCF+QI  P+LQ AL  Q  +D + + K KELAYI Q +K+PL+G+RF + LLE
Sbjct: 904  GKVIGAFCFLQIPSPELQQALAVQRRQDTECFTKAKELAYICQVIKSPLSGLRFANSLLE 963

Query: 889  SSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVM 948
            +++++E+Q+Q+LETS +CE+QI  I+  MDL  IE+G+ EL   EF LG+I++A+VSQ M
Sbjct: 964  ATNLNEDQKQFLETSVSCEKQISRIVGDMDLESIEDGSFELVRAEFFLGSIINAIVSQAM 1023

Query: 949  VLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGL 1008
             LLR++ L L+ DIPEEIK+ ++ GD+ R+Q +L++FL  ++R+APS + WVEI +    
Sbjct: 1024 FLLRERGLQLIRDIPEEIKSTAVYGDQTRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVS 1082

Query: 1009 KLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRV 1068
            K   D  + +  +FR+  PGEG+P  L+ DM++  ++WT+PEGLGL + RK+L +MNG V
Sbjct: 1083 KQTADGLRAIRTEFRMACPGEGLPPELVRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEV 1141

Query: 1069 RYVRENSKCYFVIDLEL 1085
            +Y+RE+ + YF+I LEL
Sbjct: 1142 QYIRESERSYFLIILEL 1158


>gi|327242615|gb|AEA41043.1| phytochrome B [Amphicarpaea edgeworthii]
          Length = 1105

 Score = 1357 bits (3511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 669/1099 (60%), Positives = 837/1099 (76%), Gaps = 54/1099 (4%)

Query: 41   HYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCML 100
             Y  DA L A FEQS  SGKSF+YS+S+    E VPE+QITAYL KIQRGG IQPFG M+
Sbjct: 7    QYTEDARLHAVFEQSGESGKSFDYSQSIRITSETVPEQQITAYLLKIQRGGFIQPFGSMI 66

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGL-IGIDARTLFTPPSGASLAKA 154
            AV+E +FRI+ YS+N  +ML +  +S     +D +L+   +G D RTLFT  SG  L KA
Sbjct: 67   AVDERSFRIMAYSDNARDMLGIIPQSVPSMDDDDKLHAFGLGTDVRTLFTHSSGVLLEKA 126

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
             ++REISL+NPI +HS  R   +PFY I HR+DVGIVIDLEP+++ DPALS+AGAVQSQK
Sbjct: 127  FSAREISLMNPIWIHS--RISGRPFYGIFHRVDVGIVIDLEPARTEDPALSIAGAVQSQK 184

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LAV AIS+LQ+LPGG++ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E +R DLE
Sbjct: 185  LAVRAISKLQSLPGGNVKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLE 244

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA  V V+Q + L QPLCLV STLR+PHG
Sbjct: 245  PYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASSVRVMQDEALLQPLCLVGSTLRAPHG 304

Query: 335  CHLQYMTNMGSIASLVMAVIIN--------SKDSMKLWGLVVCHHTSPRYIPFPLRYACE 386
            CH QYM NMGSIASLVMAVIIN        S+ SM+LWGLVVCHHTS R IPFPLRYACE
Sbjct: 305  CHAQYMANMGSIASLVMAVIINGNDEDGIGSRSSMRLWGLVVCHHTSARCIPFPLRYACE 364

Query: 387  FLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGA 446
            FL+QAF LQL MELQ+A+Q  EK +LRTQ LLCDMLLRD+P  IVTQSPSIM+LVKCDGA
Sbjct: 365  FLMQAFGLQLNMELQLAVQSMEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMNLVKCDGA 424

Query: 447  ALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGM 506
            ALYY G    +GVTPTE+Q++DI  WLL  HGD TGLSTDSLA+AGYPGAALLG AVCGM
Sbjct: 425  ALYYRGNYCPLGVTPTEAQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGM 484

Query: 507  ATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPW 566
            A A IT KDFLFWFRSHT KE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PW
Sbjct: 485  AVAYITEKDFLFWFRSHTGKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSMPW 544

Query: 567  EVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIET 626
            E +E++AIHSLQ+++RDSF++  E  DSKV         +++GVDELSSVA EMVRLIET
Sbjct: 545  ENAEMDAIHSLQLILRDSFKD-AEHRDSKVVVPCVPK-LELRGVDELSSVAREMVRLIET 602

Query: 627  ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
            ATAPIF VD  G INGWNAKV+ELTGL   EAMGKSLI ++V +ES+  V+ L+ RAL G
Sbjct: 603  ATAPIFAVDVDGHINGWNAKVSELTGLAVEEAMGKSLIRDLVFKESEETVDRLLSRALKG 662

Query: 687  EEDKNVEL----KLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742
                 +      +LR F  + Q+  V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MD
Sbjct: 663  ILSNTLAFWSIHRLRTFGPEHQNKAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKIVMD 722

Query: 743  KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-------- 794
            KFI +QGDY+AI+ S NPLIPPIFASD+N CC EWN AMEK+TGW R +VIG        
Sbjct: 723  KFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNTAMEKLTGWGRSDVIGKMLVREVF 782

Query: 795  ----------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVI 832
                                  + GQ T+ FPF F +R G++++  LTA++R +  G++I
Sbjct: 783  GSCCQLKGSDSMTKFMIVLHNALGGQETDKFPFSFLDRHGKYIQTFLTANKRINMNGQII 842

Query: 833  GCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSI 892
            G FCF+QI+ P+LQ AL+AQ  ++ + +A++KELAYI Q +KNPL+GIRF + LLE + +
Sbjct: 843  GAFCFLQIVSPELQQALKAQRQQEKNSFARMKELAYICQGIKNPLSGIRFTNSLLEDTGL 902

Query: 893  SENQRQYLETSDACERQIMTIIDGMDLRCIEEG-NMELKSEEFLLGNILDAVVSQVMVLL 951
            ++ Q+Q+LETS ACE+Q+  II  +DL  IE+  ++EL+  EFLLGN+++AVVSQV++LL
Sbjct: 903  TDEQKQFLETSSACEKQMSEIIHDIDLESIEDRYSLELEKGEFLLGNVINAVVSQVLLLL 962

Query: 952  RDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLI 1011
            R++NL L+ DIPEEIK L++ GD++R+Q VLSDFL  +VR+APSPDGWVEI V P +K I
Sbjct: 963  RERNLQLIRDIPEEIKTLAVYGDQLRIQQVLSDFLLNIVRYAPSPDGWVEIHVRPRIKQI 1022

Query: 1012 KDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYV 1071
             D    +H +FR+  PGEG+P  LI+DM+N  ++W T EGLGL +SRK+L +MNG V+Y+
Sbjct: 1023 SDGLTLLHAEFRMVCPGEGLPPELIQDMFNN-SRWGTQEGLGLSMSRKILKLMNGEVQYI 1081

Query: 1072 RENSKCYFVIDLELKTRGR 1090
            RE  +CYF + LEL    R
Sbjct: 1082 REAERCYFYVLLELPVTRR 1100


>gi|340007755|gb|AEK26584.1| phytochrome B1 [Populus tremula]
          Length = 1128

 Score = 1356 bits (3509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 662/1090 (60%), Positives = 824/1090 (75%), Gaps = 47/1090 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            I  Y  DA L A FEQS  SGKSF+YS+SV +  + VPEEQITAYLSKIQRGG IQPFGC
Sbjct: 41   IAQYTVDAQLHAVFEQSGGSGKSFDYSQSVRTTSQSVPEEQITAYLSKIQRGGHIQPFGC 100

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGLI--GIDARTLFTPPSGASLAKAA 155
            M+AV+E +FR+I YSEN  EML    +S    +   ++  G D RTLF P S A L KA 
Sbjct: 101  MIAVDEGSFRVIAYSENAKEMLGFTPQSVPSLDKQEILSDGTDVRTLFRPSSSAMLEKAF 160

Query: 156  ASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKL 215
             +REI+LLNPI +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKL
Sbjct: 161  GAREITLLNPIWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKL 218

Query: 216  AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP 275
            AV +IS+LQ+LPGGDI LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E +R+DLEP
Sbjct: 219  AVRSISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAENKRADLEP 278

Query: 276  YLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGC 335
            Y+G+H+P+ DIPQA+RFLFKQNRVRMI DCHA PV VIQ + L QPLCLV STLR+PHGC
Sbjct: 279  YIGLHYPSTDIPQASRFLFKQNRVRMIVDCHATPVRVIQDEALMQPLCLVGSTLRAPHGC 338

Query: 336  HLQYMTNMGSIASLVMAVIINS--------KDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
            H QYM NMGSIAS+ MAVIIN         ++S +LWGLVVCHHTS R IPFPLRYACEF
Sbjct: 339  HAQYMANMGSIASMAMAVIINGNEEEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEF 398

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L+QAF LQL MELQ+A QL+EK++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA
Sbjct: 399  LMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAA 458

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY G+ +  GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA
Sbjct: 459  LYYQGQYYPSGVTPTEAQIKDIVEWLLALHGDSTGLSTDSLADAGYPGAASLGNAVCGMA 518

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
             A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS  WE
Sbjct: 519  VAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLLWE 578

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             +E++AIHSLQ+++RDSF++ E  N SK    TQ   +++QG+DELSSVA EMVRLIETA
Sbjct: 579  NAEMDAIHSLQLILRDSFRDAEATN-SKAVVRTQLEDTELQGMDELSSVAREMVRLIETA 637

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
            TAPIF VD  G INGWNAKVAELTGL    AMGKSL+ ++V++E +  V+ L+ RAL   
Sbjct: 638  TAPIFAVDVDGCINGWNAKVAELTGLSVERAMGKSLVHDLVYKEYEETVDKLLHRALRXX 697

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
                  +KLR F+ + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T +KV+MDK++ +
Sbjct: 698  XXXXXXIKLRTFDSEHQKKALFVVVNACSSKDYMNNIVGVCFVGQDVTGQKVVMDKYVHI 757

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY+AI+ S NPLIPPIFASDEN CC EWN AMEK TGW R EVIG             
Sbjct: 758  QGDYKAIVHSPNPLIPPIFASDENTCCLEWNTAMEKFTGWSRGEVIGKMLVGEVFGSFCQ 817

Query: 795  -----------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCF 837
                             I GQ T+  PF FF+R G++V+  LTA++R + EG++IG FCF
Sbjct: 818  LKGSDALTKFMIALHNAIGGQDTDKLPFSFFDRNGKYVQALLTANKRVNMEGEIIGAFCF 877

Query: 838  MQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQR 897
            +QI   +LQ AL+ Q  ++    A++KELAYI QE++NPL+G+RF + LLE++ ++E+Q+
Sbjct: 878  LQIASNELQQALKVQRQQEKKCSARMKELAYICQEIRNPLSGLRFTNSLLENTDLTEDQK 937

Query: 898  QYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLH 957
            Q+LETS ACE+QI+ I   +DL       +EL+  EFLLG++++AVVSQ M+LLR++NL 
Sbjct: 938  QFLETSAACEKQILKITRDVDLXXXXXXLLELEKAEFLLGSVINAVVSQAMLLLRERNLQ 997

Query: 958  LLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQF 1017
            LL DIPEEIK L + GD+ R+Q VL+DFL  +VR+APS  GWVEI V P LK I D    
Sbjct: 998  LLRDIPEEIKTLVVYGDQARIQQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTL 1057

Query: 1018 VHVQF--RLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENS 1075
            VH++F          +P  L++DM++  ++W T EGLGL + RK+L +MNG V+Y+RE+ 
Sbjct: 1058 VHMEFXXXXXXXXXXLPPELVQDMFHS-SRWVTQEGLGLSMCRKILKLMNGEVQYIRESE 1116

Query: 1076 KCYFVIDLEL 1085
            +CYF++ LE+
Sbjct: 1117 RCYFLVILEV 1126


>gi|297836762|ref|XP_002886263.1| phytochrome B [Arabidopsis lyrata subsp. lyrata]
 gi|297332103|gb|EFH62522.1| phytochrome B [Arabidopsis lyrata subsp. lyrata]
          Length = 1163

 Score = 1354 bits (3505), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/1127 (58%), Positives = 838/1127 (74%), Gaps = 57/1127 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV 68
            TTN+  GG       S    ++P       I  Y  DA L A FEQS  SGKSF+YS+S+
Sbjct: 21   TTNNRRGGEQAQ--SSGTKSLRPRESMSKAIQQYTVDARLHAVFEQSGESGKSFDYSQSL 78

Query: 69   ISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS 126
             +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML L  +S
Sbjct: 79   KTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGLMPQS 138

Query: 127  ----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAI 182
                E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPFYAI
Sbjct: 139  VPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPFYAI 195

Query: 183  LHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
            LHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE V
Sbjct: 196  LHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESV 255

Query: 243  QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
            + LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI
Sbjct: 256  RDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRMI 315

Query: 303  CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS----- 357
             DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN      
Sbjct: 316  VDCNAKPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEEDG 375

Query: 358  ------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNI 411
                  + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +
Sbjct: 376  SNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRV 435

Query: 412  LRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAW 471
            LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD+  
Sbjct: 436  LRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKDVVE 495

Query: 472  WLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWG 531
            WLL NH D TGLSTDSL +AGYP AA LG AVCGMA A IT +DFLFWFRSHTAKE+KWG
Sbjct: 496  WLLANHADSTGLSTDSLGDAGYPDAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWG 555

Query: 532  GAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEE 591
            GAKHHPE KD+G +MHPR SF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E  
Sbjct: 556  GAKHHPEDKDDGQRMHPRLSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEAA 615

Query: 592  NDSK-VQGNTQ--QNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
             +SK V G  Q  ++ +  QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+A
Sbjct: 616  MNSKAVDGAVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIA 675

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q   V
Sbjct: 676  ELTGLSVEEAMGKSLVSDLIYKENEETVNKLLSRALRGDEEKNVEVKLKTFSPELQGKAV 735

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+
Sbjct: 736  FVVVNACFSKDYLNNIVGVCFVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFAA 795

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EVIG                              I GQ
Sbjct: 796  DENTCCLEWNMAMEKLTGWSRSEVIGKMLVGEVFGSCCMLKGPDALTKFMIVLHNAIGGQ 855

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+ FPF FF+R G+FV+  LTA++R   +GKVIG FCF+QI  P+LQ AL  Q  +D +
Sbjct: 856  ETDKFPFPFFDRNGKFVQALLTANKRVSLDGKVIGAFCFLQIPSPELQQALAVQRRQDTE 915

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  I+  MD
Sbjct: 916  CFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIVGDMD 975

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE+G+ ELK  EF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+IR+
Sbjct: 976  LESIEDGSFELKMAEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIVVFGDQIRI 1035

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIED 1038
            Q +L++FL  ++R+APS + WVEI +    K   D    +  +FR+  PGEG+P  L+ D
Sbjct: 1036 QQLLAEFLLSIIRYAPSQE-WVEIHLSQVSKQAADGFTAIRTEFRMACPGEGLPPELVRD 1094

Query: 1039 MYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            M++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF I LEL
Sbjct: 1095 MFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFFIILEL 1140


>gi|326516988|dbj|BAJ96486.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1168

 Score = 1353 bits (3503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 663/1108 (59%), Positives = 832/1108 (75%), Gaps = 57/1108 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DAGL A FEQS ASG+SF+YS+S+++PP    E+QI AYLS+IQRGG IQPFGC
Sbjct: 59   VAQYTLDAGLHAVFEQSGASGRSFDYSQSLLAPPTPSSEQQIAAYLSRIQRGGHIQPFGC 118

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ +SEN  ++LDL        L+         +G DAR LF+P SG  
Sbjct: 119  TLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSSAAPPPVSLGADARLLFSPSSGVL 178

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 179  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 236

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FHDD+HGEV++E RR
Sbjct: 237  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYKFHDDEHGEVLAESRR 296

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
             DLEPYLG+H+PA DIPQA+RFLF+QNRVRMI DCHA  V VIQ   + QPLCLV STLR
Sbjct: 297  GDLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHAAAVRVIQDPAMPQPLCLVGSTLR 356

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 357  SPHGCHAQYMANMGSIASLVMAVIISSGGEDEHNMTRGVIPSAMKLWGLVVCHHTSPRCI 416

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 417  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 476

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAAL+Y G+ + +GVTPTE+Q+KDI  WL   HGD TGLSTDSLA+AGYPGA 
Sbjct: 477  MDLVKCDGAALFYHGKYYPLGVTPTEAQIKDIIEWLTVCHGDSTGLSTDSLADAGYPGAT 536

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 537  ALGDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 596

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEM-EEENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 597  VVKSRSLPWENAEMDAIHSLQLILRDSFRDAGEGTSNSKAIVNGQVQLGELELRGIDELS 656

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSLI +++ +ES+ 
Sbjct: 657  SVAREMVRLIETATVPIFAVDTYGCINGWNAKVAELTGLTVEEAMGKSLIKDLIFKESEE 716

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             VE L+ +AL GEE  NVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQDI
Sbjct: 717  IVEKLLSQALRGEEGTNVEIKLKTFGSEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDI 776

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKF+ +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AME +TGW R EV+G
Sbjct: 777  TGQKVVMDKFVNIQGDYKAIVHNPNPLIPPIFASDENICCSEWNTAMENLTGWSRGEVVG 836

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ +E  PF FF++ G++V+  LTA+ R
Sbjct: 837  KLLVGEVFGNCCRLKGPDALTKFMIALHNAIGGQDSEKSPFSFFDKNGKYVQALLTANTR 896

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q  ++   YA++KELAYI QE+KNPL+GIRF +
Sbjct: 897  SKMDGETIGAFCFLQIASPELQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTN 956

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LGN+++AVV
Sbjct: 957  SLLEMTDLKDDQRQFLETSAACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGNVMNAVV 1016

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+LLR+++L L+ DIP+EIK  S  GD+ R+Q VLS FL  +VR AP+ +GWVEI+V
Sbjct: 1017 SQVMILLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLSHFLLSMVRFAPTENGWVEIQV 1076

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D  + +   FR   PGEG+P  +++DM++   +WTT EG+GL + RK+L +M
Sbjct: 1077 RPNVKQNSDGTETMLFLFRFACPGEGLPPDIVQDMFSN-ARWTTQEGIGLSVCRKILKLM 1135

Query: 1065 NGRVRYVRENSKCYFVIDLELKTRGRQK 1092
             G V+Y+RE+ + +F+I LEL    R +
Sbjct: 1136 GGEVQYIRESERSFFLIVLELPQPRRSE 1163


>gi|293335473|ref|NP_001169810.1| uncharacterized protein LOC100383702 [Zea mays]
 gi|37926866|gb|AAP06788.1| phytochrome B1 apoprotein [Zea mays]
          Length = 1161

 Score = 1353 bits (3503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1098 (60%), Positives = 830/1098 (75%), Gaps = 55/1098 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+YS+S+ +PP    E+QI AYLS+IQRGG IQPFGC
Sbjct: 54   VAQYTLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPFGC 113

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL------IGIDARTLFTPPSGASL 151
             LAV ++ +FR++ +SEN  ++LDL        L+        +G DAR LF+P S   L
Sbjct: 114  TLAVADDSSFRLLAFSENSPDLLDLSPHHSVPSLDSSAPPHVSLGADARLLFSPSSAVLL 173

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             +A A+REISLLNPI +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQ
Sbjct: 174  ERAFAAREISLLNPIWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQ 231

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            SQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR 
Sbjct: 232  SQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRRD 291

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            +LEPYLG+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR+
Sbjct: 292  NLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGLSQPLCLVGSTLRA 351

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPF 379
            PHGCH QYM NMGSIASLVMAVII+S              +MKLWGLVVCHHTSPR IPF
Sbjct: 352  PHGCHAQYMANMGSIASLVMAVIISSGGDDEQTGRGGISSAMKLWGLVVCHHTSPRCIPF 411

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSIMD
Sbjct: 412  PLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMD 471

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAALYY G+ + +GVTPTESQ+KDI  WL   HGD TGLSTDSLA+AGY GAA L
Sbjct: 472  LVKCDGAALYYHGKYYPLGVTPTESQIKDIIEWLTVFHGDSTGLSTDSLADAGYLGAAAL 531

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G+AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVV
Sbjct: 532  GEAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVV 591

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELSSV 616
            K+RS PWE +E++AIHSLQ+++RDSF++  E  N+SK  V G  Q    +++G++ELSSV
Sbjct: 592  KSRSLPWENAEMDAIHSLQLILRDSFRDAAEGTNNSKAIVNGQVQLRELELRGINELSSV 651

Query: 617  ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
            A EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+++++ +ES+  V
Sbjct: 652  AREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEATV 711

Query: 677  ENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736
            E L+ RAL GEEDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+T 
Sbjct: 712  EKLLSRALRGEEDKNVEIKLKTFGSEQSKGPIFVVVNACSSRDYTQNIVGVCFVGQDVTG 771

Query: 737  EKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-- 794
            +KV+MDKF+ +QGDY+AI+ + NPLIPPIFASDEN  CSEWN AMEK+TGW R EV+G  
Sbjct: 772  QKVVMDKFVNIQGDYKAIVHNPNPLIPPIFASDENTSCSEWNTAMEKLTGWSRGEVVGKF 831

Query: 795  ----------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTD 826
                                        I GQ  E FPF FF++ G++V+  LTA+ R+ 
Sbjct: 832  LIGEVFGNCCRLKGPDALTKFMVIIHNAIGGQDYEKFPFSFFDKNGKYVQALLTANTRSK 891

Query: 827  AEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKL 886
             +GK IG FCF+QI   ++Q A E Q  ++   YA++KELAYI QE+KNPL+GIRF + L
Sbjct: 892  MDGKSIGAFCFLQIASTEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSL 951

Query: 887  LESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQ 946
            L+ + ++++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVVSQ
Sbjct: 952  LQMTDLNDDQRQFLETSSACEKQMSKIVKDASLQSIEDGSLVLEQSEFSLGDVMNAVVSQ 1011

Query: 947  VMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLP 1006
             M+LLR+++L L+ DIP+EIK  S  GD+ R+Q VL+DFL  +VR APS +GWVEI+V P
Sbjct: 1012 AMLLLRERDLQLIRDIPDEIKDASAYGDQCRIQQVLADFLLSMVRSAPSENGWVEIQVRP 1071

Query: 1007 GLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNG 1066
             +K   D        FR   PGEG+P+ +++DM++  +QW+T EG+GL   RK+L +M G
Sbjct: 1072 NVKQNSDGTNTELFIFRFACPGEGLPADVVQDMFSN-SQWSTQEGVGLSTCRKILKLMGG 1130

Query: 1067 RVRYVRENSKCYFVIDLE 1084
             V+Y+RE+ + +F+I LE
Sbjct: 1131 EVQYIRESERSFFLIVLE 1148


>gi|57791646|gb|AAW56591.1| phytochrome B [Arabidopsis lyrata]
          Length = 1160

 Score = 1353 bits (3501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/1127 (58%), Positives = 838/1127 (74%), Gaps = 57/1127 (5%)

Query: 9    TTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV 68
            TTN+  GG       S    ++P       I  Y  DA L A FEQS  SGKSF+YS+S+
Sbjct: 18   TTNNRRGGEQAQ--SSGTKSLRPRESMSKAIQQYTVDARLHAVFEQSGESGKSFDYSQSL 75

Query: 69   ISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS 126
             +   G  VPE+QITAYLS+IQRGG IQPFGCM+AV+E +FRIIGYSEN  EML L  +S
Sbjct: 76   KTTTYGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGLMPQS 135

Query: 127  ----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAI 182
                E  E+  + G D R+LFT  S   L +A  +REI+LLNP+ +HS  ++  KPFYAI
Sbjct: 136  VPTLEKPEILAM-GTDVRSLFTSSSSILLERAFVAREITLLNPVWIHS--KNTGKPFYAI 192

Query: 183  LHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
            LHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE V
Sbjct: 193  LHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESV 252

Query: 243  QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
            + LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI
Sbjct: 253  RDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRMI 312

Query: 303  CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS----- 357
             DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN      
Sbjct: 313  VDCNAKPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEEDG 372

Query: 358  ------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNI 411
                  + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +
Sbjct: 373  SNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRV 432

Query: 412  LRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAW 471
            LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD+  
Sbjct: 433  LRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKDVVE 492

Query: 472  WLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWG 531
            WLL NH D TGLSTDSL +AGYP AA LG AVCGMA A IT +DFLFWFRSHTAKE+KWG
Sbjct: 493  WLLANHADSTGLSTDSLGDAGYPDAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWG 552

Query: 532  GAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEE 591
            GAKHHPE KD+G +MHPR SF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E  
Sbjct: 553  GAKHHPEDKDDGQRMHPRLSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEAA 612

Query: 592  NDSK-VQGNTQ--QNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
             +SK V G  Q  ++ +  QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+A
Sbjct: 613  MNSKAVDGAVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIA 672

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q   V
Sbjct: 673  ELTGLSVEEAMGKSLVSDLIYKENEETVNKLLSRALRGDEEKNVEVKLKTFSPELQGKAV 732

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+
Sbjct: 733  FVVVNACFSKDYLNNIVGVCFVGQDVTGQKLVMDKFINIQGDYKAIVHSPNPLIPPIFAA 792

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EVIG                              I GQ
Sbjct: 793  DENTCCLEWNMAMEKLTGWSRSEVIGKMLVGEVFGSCCMLKGPDALTKFMIVLHNAIGGQ 852

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+ FPF FF+R G+FV+  LTA++R   +GKVIG FCF+QI  P+LQ AL  Q  +D +
Sbjct: 853  ETDKFPFPFFDRNGKFVQALLTANKRVSLDGKVIGAFCFLQIPSPELQQALAVQRRQDTE 912

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             + K KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS +CE+QI  I+  MD
Sbjct: 913  CFTKAKELAYICQVIKNPLSGMRFANSLLEATDLNEDQKQLLETSVSCEKQISRIVGDMD 972

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE+G+ ELK  EF LG++++A+VSQ M LLRD+ L L+ DIPEEIK++ + GD+IR+
Sbjct: 973  LESIEDGSFELKMAEFFLGSVINAIVSQAMFLLRDRGLQLIRDIPEEIKSIVVFGDQIRI 1032

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIED 1038
            Q +L++FL  ++R+APS + WVEI +    K   D    +  +FR+  PGEG+P  L+ D
Sbjct: 1033 QQLLAEFLLSIIRYAPSQE-WVEIHLSQVSKQAADGFTAIRTEFRMACPGEGLPPELVRD 1091

Query: 1039 MYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            M++  ++WT+PEGLGL + RK+L +MNG V+Y+RE+ + YF I LEL
Sbjct: 1092 MFHS-SRWTSPEGLGLSVCRKILKLMNGEVQYIRESERSYFFIILEL 1137


>gi|33333478|gb|AAQ11872.1| phytochrome B [Stellaria longipes]
          Length = 1128

 Score = 1352 bits (3500), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1111 (59%), Positives = 835/1111 (75%), Gaps = 52/1111 (4%)

Query: 31   PVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV--ISPPEGVPEEQITAYLSKIQ 88
            P +     I  Y  DA L A FEQS  SGKSF+YS+SV   +  E VPE+QITAYLSKIQ
Sbjct: 19   PSDTMSRAIAQYTIDARLHAVFEQSGESGKSFDYSQSVKTYTSAESVPEQQITAYLSKIQ 78

Query: 89   RGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL---------IGIDA 139
            RGGLIQPFGCMLA+++ T+RII YS+N +E+L   + +    +  L         +G D 
Sbjct: 79   RGGLIQPFGCMLAIDDLTYRIIAYSQNSVELLGFITTTTTTAVPSLEAVQQRIIAVGTDI 138

Query: 140  RTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKS 199
            R+LF   S   L KA ++REI+LLNP+ +HS +    KPFYAILHRIDVGIVIDLEP+++
Sbjct: 139  RSLFMSSSCVLLEKAFSAREITLLNPVWIHSKANG--KPFYAILHRIDVGIVIDLEPART 196

Query: 200  GDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDD 259
             DPALS+AGAVQSQKLAV AIS+LQ+LPGGD+ LLCDTVVE V++L  YDRVM+Y FH+D
Sbjct: 197  EDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKLLCDTVVESVRQLAAYDRVMVYKFHED 256

Query: 260  DHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELK 319
            +HGEVV+E +R+DLEPYLG+H+PA DIPQA+RFLFKQNRVRMI DCHA  V V+Q + L+
Sbjct: 257  EHGEVVAESKRADLEPYLGLHYPATDIPQASRFLFKQNRVRMIVDCHADSVSVVQDERLR 316

Query: 320  QPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-------SMKLWGLVVCHHT 372
            QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D       +M+LWGLVVCHHT
Sbjct: 317  QPLCLVGSTLRAPHGCHSQYMANMGSIASLVMAVIINGNDDEGSTRNAMRLWGLVVCHHT 376

Query: 373  SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVT 432
            SPR IPFPLRYACEFL+QAF LQL MELQ++ Q+ EK +LRTQ LLCDM+LR++P  IVT
Sbjct: 377  SPRSIPFPLRYACEFLMQAFGLQLNMELQLSAQVLEKRVLRTQTLLCDMILRESPTGIVT 436

Query: 433  QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
            QSPSIMDLVKCDGAAL + G+ + +GVTPTE QLKDI  WLL+NHGD TGLSTDSLA+AG
Sbjct: 437  QSPSIMDLVKCDGAALLFCGKYYPLGVTPTELQLKDIVQWLLSNHGDSTGLSTDSLADAG 496

Query: 493  YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
            YPGA  L  AVCGMA A IT  DFLFWFRSH AKE+KWGGAKHHPE KD+  +M+PRSSF
Sbjct: 497  YPGALALADAVCGMAVAFITRSDFLFWFRSHPAKEIKWGGAKHHPEDKDDVQRMNPRSSF 556

Query: 553  KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612
            KAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ EE   SK   + Q     MQG+DE
Sbjct: 557  KAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKD-EETTHSKAIVHDQAGDVAMQGIDE 615

Query: 613  LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
            LSSVA EMVRLIETA APIF VD+ G INGWNAK +EL GL   EAMGKSL+ ++V E+S
Sbjct: 616  LSSVAKEMVRLIETAMAPIFAVDADGCINGWNAKASELIGLSVEEAMGKSLVHDLVCEDS 675

Query: 673  QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQ 732
            +   + L+  AL G+EDKNVE+KL+ F  Q+    VY++VNAC S+DY N + GVCFVG 
Sbjct: 676  KNVTQELLLHALQGDEDKNVEIKLKAFGSQQHKKAVYVVVNACCSKDYTNKIVGVCFVGH 735

Query: 733  DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV 792
            D+T +K +MDKF+ +QGDY+AI+ S +PLIPPIFASDEN+CC+EWN AME +TG+ + +V
Sbjct: 736  DVTGQKNVMDKFVNIQGDYKAIVHSPSPLIPPIFASDENSCCTEWNTAMEILTGYGKEDV 795

Query: 793  IG------------------------------ITGQGTENFPFGFFNRQGQFVEVALTAS 822
            IG                              I GQ ++ FPF F+NR G++V+  LTA+
Sbjct: 796  IGKTLVGEIFGSICRLKGHDSLTKFMVVLHNAIGGQDSDKFPFSFYNRGGRYVQGLLTAN 855

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +RT+ +G + G FCF+QI   DLQ ALE Q  ++   + ++KELAY+ QE+KNPLNGIRF
Sbjct: 856  KRTNIDGHITGAFCFLQIASSDLQQALEIQRQQENVCFERMKELAYLCQEIKNPLNGIRF 915

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
             + LLE++S+ E+Q+Q++ETS+ACE+QI  I+  + L  ++E   EL   EF+LGNI++A
Sbjct: 916  ANSLLEATSLGEDQKQFIETSNACEKQIKKILGDIHLESVDESPFELVKTEFMLGNIINA 975

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
            VVSQVM+ LR++ L L+ DIPEEIK L++ GD+IR+Q +L++FL  +VR+APSPDGWVEI
Sbjct: 976  VVSQVMIPLRERELQLIRDIPEEIKTLAVCGDQIRIQQILAEFLVNMVRYAPSPDGWVEI 1035

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
             VLP LK + D     ++++RL  PGEG+P  L++DM++  ++WTT EGLGL + RK+L 
Sbjct: 1036 HVLPRLKQVADGATVAYIEYRLVSPGEGLPPDLVQDMFHN-SRWTTQEGLGLSMCRKILK 1094

Query: 1063 MMNGRVRYVRENSKCYFVIDLELKTRGRQKM 1093
            +MNG V+Y+RE+ + YF + LEL+   +Q M
Sbjct: 1095 LMNGEVQYIRESERSYFFVILELRMPPKQLM 1125


>gi|414866482|tpg|DAA45039.1| TPA: phytochromeB1 [Zea mays]
          Length = 1161

 Score = 1352 bits (3499), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1098 (60%), Positives = 830/1098 (75%), Gaps = 55/1098 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+YS+S+ +PP    E+QI AYLS+IQRGG IQPFGC
Sbjct: 54   VAQYTLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPFGC 113

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL------IGIDARTLFTPPSGASL 151
             LAV ++ +FR++ +SEN  ++LDL        L+        +G DAR LF+P S   L
Sbjct: 114  TLAVADDSSFRLLAFSENSPDLLDLSPHHSVPSLDSSAPPHVSLGADARLLFSPSSAVLL 173

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             +A A+REISLLNPI +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQ
Sbjct: 174  ERAFAAREISLLNPIWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQ 231

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            SQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR 
Sbjct: 232  SQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRRD 291

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            +LEPYLG+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR+
Sbjct: 292  NLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGLSQPLCLVGSTLRA 351

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPF 379
            PHGCH QYM NMGSIASLVMAVII+S              +MKLWGLVVCHHTSPR IPF
Sbjct: 352  PHGCHAQYMANMGSIASLVMAVIISSGGDDEQTGRGGISSAMKLWGLVVCHHTSPRCIPF 411

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSIMD
Sbjct: 412  PLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMD 471

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAALYY G+ + +GVTPTESQ+KDI  WL   HGD TGLSTDSLA+AGY GAA L
Sbjct: 472  LVKCDGAALYYHGKYYPLGVTPTESQIKDIIEWLTVFHGDSTGLSTDSLADAGYLGAAAL 531

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G+AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVV
Sbjct: 532  GEAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVV 591

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELSSV 616
            K+RS PWE +E++AIHSLQ+++RDSF++  E  N+SK  V G  Q    +++G++ELSSV
Sbjct: 592  KSRSLPWENAEMDAIHSLQLILRDSFRDAAEGTNNSKAIVNGQVQLRELELRGINELSSV 651

Query: 617  ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
            A EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+++++ +ES+  V
Sbjct: 652  AREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEATV 711

Query: 677  ENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736
            E L+ RAL GEEDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+T 
Sbjct: 712  EKLLSRALRGEEDKNVEIKLKTFGSEQYKGPIFVVVNACSSRDYTQNIVGVCFVGQDVTG 771

Query: 737  EKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-- 794
            +KV+MDKF+ +QGDY+AI+ + NPLIPPIFASDEN  CSEWN AMEK+TGW R EV+G  
Sbjct: 772  QKVVMDKFVNIQGDYKAIVHNPNPLIPPIFASDENTSCSEWNTAMEKLTGWSRGEVVGKF 831

Query: 795  ----------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTD 826
                                        I GQ  E FPF FF++ G++V+  LTA+ R+ 
Sbjct: 832  LIGEVFGNCCRLKGPDALTKFMVIIHNAIGGQDYEKFPFSFFDKNGKYVQALLTANTRSK 891

Query: 827  AEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKL 886
             +GK IG FCF+QI   ++Q A E Q  ++   YA++KELAYI QE+KNPL+GIRF + L
Sbjct: 892  MDGKSIGAFCFLQIASTEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSL 951

Query: 887  LESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQ 946
            L+ + ++++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVVSQ
Sbjct: 952  LQMTDLNDDQRQFLETSSACEKQMSKIVKDASLQSIEDGSLVLEQSEFSLGDVMNAVVSQ 1011

Query: 947  VMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLP 1006
             M+LLR+++L L+ DIP+EIK  S  GD+ R+Q VL+DFL  +VR APS +GWVEI+V P
Sbjct: 1012 AMLLLRERDLQLIRDIPDEIKDASAYGDQCRIQQVLADFLLSMVRSAPSENGWVEIQVRP 1071

Query: 1007 GLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNG 1066
             +K   D        FR   PGEG+P+ +++DM++  +QW+T EG+GL   RK+L +M G
Sbjct: 1072 NVKQNSDGTNTELFIFRFACPGEGLPADVVQDMFSN-SQWSTQEGVGLSTCRKILKLMGG 1130

Query: 1067 RVRYVRENSKCYFVIDLE 1084
             V+Y+RE+ + +F+I LE
Sbjct: 1131 EVQYIRESERSFFLIVLE 1148


>gi|11134029|sp|P93527.2|PHYB_SORBI RecName: Full=Phytochrome B
 gi|7110162|gb|AAB41398.2| phytochrome B [Sorghum bicolor]
          Length = 1178

 Score = 1352 bits (3499), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1099 (59%), Positives = 830/1099 (75%), Gaps = 55/1099 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+YS+S+ +PP    E+QI AYLS+IQRGG IQPFGC
Sbjct: 71   VAQYTLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPFGC 130

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL------IGIDARTLFTPPSGASL 151
             LAV ++ +FR++ +SEN  ++LDL        L+        +G DAR LF+P S   L
Sbjct: 131  TLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSAAPPPVSLGADARLLFSPSSAVLL 190

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQ
Sbjct: 191  ERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQ 248

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            SQKLAV AISRLQALPGGDI LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR 
Sbjct: 249  SQKLAVRAISRLQALPGGDIKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRRD 308

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            +LEPYLG+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   + QPLCLV STLR+
Sbjct: 309  NLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGMSQPLCLVGSTLRA 368

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPF 379
            PHGCH QYM NMGSIASLVMAVII+S              +MKLWGLVVCHHTSPR IPF
Sbjct: 369  PHGCHAQYMANMGSIASLVMAVIISSGGDDEQTGRGGISSAMKLWGLVVCHHTSPRCIPF 428

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSIMD
Sbjct: 429  PLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMD 488

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAALYY G+ + +GVTPTESQ+KDI  WL   HGD TGLSTDSLA+AGY GAA L
Sbjct: 489  LVKCDGAALYYHGKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADAGYLGAAAL 548

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVV
Sbjct: 549  GDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVV 608

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELSSV 616
            K+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G++ELSSV
Sbjct: 609  KSRSLPWENAEMDAIHSLQLILRDSFRDAAEGTSNSKAIVNGQVQLGELELRGINELSSV 668

Query: 617  ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
            A EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+++++ +ES+  V
Sbjct: 669  AREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEEIV 728

Query: 677  ENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736
            E L+ RAL GEEDKNVE+KL+ F  ++ +  ++++VNAC+SRDY  N+ GVCFVGQD+T 
Sbjct: 729  EKLLSRALRGEEDKNVEIKLKTFGSEQSNGAIFVIVNACSSRDYTQNIVGVCFVGQDVTG 788

Query: 737  EKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-- 794
            +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN  CSEWN AMEK+TGW R EV+G  
Sbjct: 789  QKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTSCSEWNTAMEKLTGWSRGEVVGKF 848

Query: 795  ----------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTD 826
                                        I GQ  E FPF FF++ G++V+  LTA+ R+ 
Sbjct: 849  LIGEVFGSFCRLKGPDALTKFMVVIHNAIGGQDYEKFPFSFFDKNGKYVQALLTANTRSK 908

Query: 827  AEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKL 886
             +GK IG FCF+QI   ++Q A E Q  ++   YA++KELAYI QE+KNPL+GIRF + L
Sbjct: 909  MDGKSIGAFCFLQIASAEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSL 968

Query: 887  LESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQ 946
            L+ + ++++QRQ+LET  ACE Q+  I+    L+ IE+G++ L+  EF  G++++AVVSQ
Sbjct: 969  LQMTDLNDDQRQFLETCSACEEQMSKIVKDATLQSIEDGSLVLEKSEFSFGDVMNAVVSQ 1028

Query: 947  VMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLP 1006
             M+LLR+++L L+ DIP+EIK  S  GD+ R+Q VL+DFL  +VR APS +GWVEI+V P
Sbjct: 1029 AMLLLRERDLQLIRDIPDEIKDASAYGDQFRIQQVLADFLLSMVRSAPSENGWVEIQVRP 1088

Query: 1007 GLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNG 1066
             +K   D        FR T+PGEG+P+ +++DM++  +QW+T EG+GL   RK+L +M G
Sbjct: 1089 NVKQNSDGTDTELFIFRFTYPGEGLPADIVQDMFSN-SQWSTQEGVGLSTCRKILKLMGG 1147

Query: 1067 RVRYVRENSKCYFVIDLEL 1085
             V+Y+RE+ + +F+I LEL
Sbjct: 1148 EVQYIRESERSFFLIVLEL 1166


>gi|62199070|gb|AAX76779.1| putative phytochrome B [Triticum aestivum]
          Length = 1166

 Score = 1352 bits (3498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 831/1101 (75%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DAGL A FEQS ASG+SF+YS+S+++PP    E+QI AYLS+IQRGG IQPFGC
Sbjct: 57   VAQYTLDAGLHAVFEQSGASGRSFDYSQSLLAPPTPSSEQQIAAYLSRIQRGGHIQPFGC 116

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ +SEN  ++LDL        L+         +G DAR LF+P SG  
Sbjct: 117  TLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSSAAPPPVSLGADARLLFSPSSGVL 176

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 177  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 234

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FHDD+HGEV++E RR
Sbjct: 235  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYKFHDDEHGEVLAESRR 294

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
             DLEPYLG+H+PA DIPQA+RFLF+QNRVRMI DCHA  V VIQ   + QPLCLV STLR
Sbjct: 295  GDLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHAAAVRVIQDPAMPQPLCLVGSTLR 354

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 355  SPHGCHAQYMANMGSIASLVMAVIISSGGEDEHNMTRGVIPSAMKLWGLVVCHHTSPRCI 414

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK++LRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 415  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHMLRTQTLLCDMLLRDSPTGIVTQSPSI 474

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAAL+Y G+ + +GVTPTE+Q+KDI  WL   HGD TGLSTDSLA+AGYPGA 
Sbjct: 475  MDLVKCDGAALFYHGKYYPLGVTPTEAQIKDIIEWLTVCHGDSTGLSTDSLADAGYPGAT 534

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 535  ALGDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 594

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEM-EEENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 595  VVKSRSLPWENAEMDAIHSLQLILRDSFRDAGEGTSNSKAIVNGQVQLGELELRGIDELS 654

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+ +++ +ES+ 
Sbjct: 655  SVAREMVRLIETATVPIFAVDTYGCINGWNAKVAELTGLTVEEAMGKSLVKDLIFKESEE 714

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             VE L+ +AL GEE  NVE+KL+ F  ++    ++++VNAC+SRDY  ++ GVCFVGQDI
Sbjct: 715  IVEKLLSQALKGEEGTNVEIKLKTFGSEQSKGPIFVIVNACSSRDYTKSIVGVCFVGQDI 774

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKF+ +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 775  TGQKVVMDKFVNIQGDYKAIVHNPNPLIPPIFASDENICCSEWNTAMEKLTGWSRGEVVG 834

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ +E  PF FF++ G++V+  LTA+ R
Sbjct: 835  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDSEKSPFSFFDKNGKYVQALLTANTR 894

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q  ++   YA++KELAYI QE+KNPL+GIRF +
Sbjct: 895  SKMDGETIGAFCFLQIASPELQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTN 954

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LGN+++AVV
Sbjct: 955  SLLEMTDLKDDQRQFLETSAACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGNVMNAVV 1014

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+LLR+++L L+ DIP+EIK  S  GD+ R+Q VLSDFL  +VR AP+ +GWVEI+V
Sbjct: 1015 SQVMILLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLSDFLLSMVRFAPTENGWVEIQV 1074

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D  + +   FR   PGEG+P  +++DM++   +WTT EG+GL + RK+L +M
Sbjct: 1075 RPNVKQNSDGTETMLFLFRFACPGEGLPPDIVQDMFSN-ARWTTQEGIGLSVCRKILKLM 1133

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G  +Y+RE+ + +F+I LEL
Sbjct: 1134 GGEEQYIRESERSFFLIVLEL 1154


>gi|422898335|dbj|BAM67033.1| phytochrome b [Chrysanthemum seticuspe f. boreale]
          Length = 1130

 Score = 1351 bits (3496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1108 (59%), Positives = 838/1108 (75%), Gaps = 49/1108 (4%)

Query: 27   AKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPP---EGVPEEQITAY 83
            A    VN     I  Y  DA L A +EQS  SGKSF+YS+S+ +     + + E+Q+TAY
Sbjct: 27   ASTSVVNSMSKAIAQYAVDARLHAVYEQSGGSGKSFDYSQSIKTSATNDDSIAEQQMTAY 86

Query: 84   LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDA 139
            LSKIQRGG IQPFGCM+A++  TF++I +SEN  E L L  +S    E  E+   IG D 
Sbjct: 87   LSKIQRGGHIQPFGCMIAIDNVTFKVIAFSENARERLGLAPQSVPSLEKPEIL-TIGTDV 145

Query: 140  RTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKS 199
            +TLF   S   L  A  +REI+L NP LV S +    KPFYAILHRIDVGIVIDLEP ++
Sbjct: 146  KTLFMNSSVLKLEHAFRAREITLSNPHLVQSKNSG--KPFYAILHRIDVGIVIDLEPVRT 203

Query: 200  GDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDD 259
             DP +S AG+VQSQKLAV AIS++QALPGGDI LLCDTVV++V++LTGYDRVM+Y FH+D
Sbjct: 204  EDPGISGAGSVQSQKLAVRAISKVQALPGGDIKLLCDTVVQNVRELTGYDRVMVYKFHED 263

Query: 260  DHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELK 319
            +HGEVV+E +R+DL+PY+G+H+PA DIPQA+RFLF+QNRVRMI DC+A PV V+Q   L 
Sbjct: 264  EHGEVVAESKRADLDPYIGLHYPATDIPQASRFLFRQNRVRMIVDCYANPVRVVQDDALM 323

Query: 320  QPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-------SMKLWGLVVCHHT 372
            QPLCLV STLR+PHGCH QYM NMGS ASL +AVIIN  +       +M LWGLVVCHHT
Sbjct: 324  QPLCLVGSTLRAPHGCHAQYMANMGSRASLALAVIINGNEDGAGGRGTMGLWGLVVCHHT 383

Query: 373  SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVT 432
            S R IPFPLR+ACEFL+QAF LQL +ELQ+A Q++EK ILRTQ LLCDMLLRD+P  IVT
Sbjct: 384  SARCIPFPLRHACEFLMQAFGLQLNLELQLASQMSEKRILRTQTLLCDMLLRDSPTGIVT 443

Query: 433  QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
            QSPSIMDLVKCDGAALYY G+ + +G+TPTESQ+KDI  WLL  H D TGLSTDSLA+AG
Sbjct: 444  QSPSIMDLVKCDGAALYYQGKYYPIGITPTESQIKDIVDWLLACHTDSTGLSTDSLADAG 503

Query: 493  YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
            YPGAA LG AVCGMA A ITSKDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSF
Sbjct: 504  YPGAATLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSF 563

Query: 553  KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612
             AFLEVVK+RS PWE SE++AIHSLQ+++RDSF++ +E N SK     Q +   +QG+DE
Sbjct: 564  NAFLEVVKSRSLPWENSEMDAIHSLQLILRDSFKDSDESN-SKAVIKVQIDEMGLQGMDE 622

Query: 613  LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
            LSSVA EMVRLIETATAPIF VD  G INGWNAK+AELTGL  +EAMGKSL+ +++++ES
Sbjct: 623  LSSVAREMVRLIETATAPIFAVDVEGRINGWNAKIAELTGLSVNEAMGKSLVQDLIYKES 682

Query: 673  QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQ 732
            +  V  L+  A+ GEEDKNVE+KL+ F L ++   V+++VNAC+S+DY +N+ GVCFVGQ
Sbjct: 683  EETVVKLLQNAIQGEEDKNVEIKLKTFNLAQEDDAVFVVVNACSSKDYTDNIVGVCFVGQ 742

Query: 733  DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV 792
            D+T +KV+MDKF+++QGDY+AII S N LIPPIFASDEN CCSEWN AMEK+TGW R +V
Sbjct: 743  DVTRQKVVMDKFVQIQGDYKAIIHSPNALIPPIFASDENTCCSEWNTAMEKLTGWGREDV 802

Query: 793  IG------------------------------ITGQGTENFPFGFFNRQGQFVEVALTAS 822
            IG                              I GQ T+ +PF FF+R+G++V+  LTA+
Sbjct: 803  IGKMLVGEIFGSCCRLKGPDSLTKFMIILHNAIGGQDTDKYPFSFFDRRGKYVQALLTAN 862

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +R +  G+V G FCF+QI  P+LQ A + Q  ++   + ++KELAYI  E+KNPL+GIRF
Sbjct: 863  KRVNLGGEVTGAFCFVQIASPELQQAFKIQRQQENKCFERMKELAYICHEIKNPLSGIRF 922

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
             + LLE++ ++E+Q+Q LETS AC++Q++ II  +D+  I+EG++EL+  +FLLGN++DA
Sbjct: 923  ANSLLEATDLTEDQKQLLETSAACQKQMLKIIKDVDMENIQEGHLELEKHDFLLGNVIDA 982

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
            VVSQVM++LRD+ + L+ DIPE+IK L++ GD+ R+Q VL++FL  +VRH+PSP+GWVEI
Sbjct: 983  VVSQVMLILRDRGVQLIRDIPEDIKTLTVYGDQTRVQQVLTNFLLNMVRHSPSPNGWVEI 1042

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
            +V   LK I D    VH+ FR+  PG G+P  L++DM++  +QWTT EGLGL + RK+L 
Sbjct: 1043 QVRSTLKQIFDGMTIVHIDFRMVCPGNGLPPELVQDMFHS-SQWTTEEGLGLSMCRKILK 1101

Query: 1063 MMNGRVRYVRENSKCYFVIDLELKTRGR 1090
            +MNG V+Y+RE+ +CYF I LEL    R
Sbjct: 1102 LMNGDVQYIRESERCYFHIVLELPLPNR 1129


>gi|240119393|dbj|BAH79245.1| phytochrome B [Cardamine nipponica]
 gi|240119395|dbj|BAH79246.1| phytochrome B [Cardamine nipponica]
 gi|240119397|dbj|BAH79247.1| phytochrome B [Cardamine nipponica]
          Length = 1184

 Score = 1351 bits (3496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1097 (60%), Positives = 832/1097 (75%), Gaps = 55/1097 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEG--VPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ +   G  VPE+QITAYLS+IQRGG IQPF
Sbjct: 67   IQQYTVDARLHAVFEQSGGSGKSFDYSQSLKTTTYGSSVPEQQITAYLSRIQRGGFIQPF 126

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GCM+AV+E TFRIIGYSEN  EML L  +S    E  E+  + G D R+LF P S   L 
Sbjct: 127  GCMIAVDESTFRIIGYSENAREMLGLMPQSVPSLEKPEILAM-GTDVRSLFAPSSSILLE 185

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +R+I++LNP+ +HS  ++  KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQS
Sbjct: 186  RAFVARDITILNPVWIHS--KNTGKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQS 243

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AISRLQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R D
Sbjct: 244  QKLAVRAISRLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDD 303

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV+++Q   L Q +CLV STLR+P
Sbjct: 304  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVLLVQDDRLSQSMCLVGSTLRAP 363

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCHHTSPRYIPFPL 381
            HGCH QYM NMGSIASL MAVIIN            ++SMKLWGLVVCHHTS R IPFPL
Sbjct: 364  HGCHSQYMANMGSIASLAMAVIINGNEEDGSNAGGGRNSMKLWGLVVCHHTSSRCIPFPL 423

Query: 382  RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
            RYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQSPSIMDLV
Sbjct: 424  RYACEFLMQAFGLQLNMELQLALQMSEKRVLRMQTLLCDMLLRDSPAGIVTQSPSIMDLV 483

Query: 442  KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
            KCDGAA  Y G+ + +GV PTE+Q+KDI  WLL NH D TGLSTDSL EAGYPGAA LG 
Sbjct: 484  KCDGAAFLYHGKYYPLGVAPTEAQIKDIVDWLLANHADSTGLSTDSLGEAGYPGAAALGD 543

Query: 502  AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
            AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+
Sbjct: 544  AVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKS 603

Query: 562  RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK-VQGNTQ--QNGSKMQGVDELSSVAC 618
            RS PWE +E++AIHSLQ+++RDSF+E E   +SK V G  Q  ++ S  QG DEL +VA 
Sbjct: 604  RSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKAVDGAVQPCRDMSGEQGNDELGAVAR 663

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+ +++++E++  V  
Sbjct: 664  EMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEETVNK 723

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            L+ RAL G+EDKNVE+KL+ F  + Q   V+++VNAC+S+DY NN+ GVCFVGQD+T +K
Sbjct: 724  LLSRALRGDEDKNVEVKLKTFSPELQGKAVFMIVNACSSKDYLNNIVGVCFVGQDVTGQK 783

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794
            ++MDKFI +QGDY+AI+ + NPLIPPIFA+DEN  C EWNAA+EK+TG  R EVIG    
Sbjct: 784  IVMDKFINIQGDYKAIVHNPNPLIPPIFAADENTICLEWNAALEKLTGVSRGEVIGKMLV 843

Query: 795  --------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAE 828
                                      I GQ TE FPF FF+R G+FV+  LTA++R   +
Sbjct: 844  GEVFGNCCRLKGPDALTRFMIVLHNAIGGQETEKFPFPFFDRNGKFVQALLTANKRVSLD 903

Query: 829  GKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLE 888
            GKVIG FCF+QI  P+LQ AL  Q  +D + + K KELAYI Q +K+PL+G+RF + LLE
Sbjct: 904  GKVIGAFCFLQIPSPELQQALAVQRRQDTECFTKAKELAYICQVIKSPLSGLRFANSLLE 963

Query: 889  SSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVM 948
            +++++E+Q+Q+LETS +CE+QI  I+  MDL  IE+G+ EL   EF LG+I++A+VSQ M
Sbjct: 964  ATNLNEDQKQFLETSVSCEKQISRIVGDMDLESIEDGSFELVRAEFFLGSIINAIVSQAM 1023

Query: 949  VLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGL 1008
             LLR++ L L+ DIPEEIK+ ++ GD+ R+Q +L++FL  ++R+APS + WVEI +    
Sbjct: 1024 FLLRERGLQLIRDIPEEIKSTAVYGDQTRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVS 1082

Query: 1009 KLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRV 1068
            K   D  + +  +FR+  PGEG+P  L+ DM++  ++WT+PEGLGL + RK+L +MNG V
Sbjct: 1083 KQTADGLRAIRTEFRMACPGEGLPPELVRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEV 1141

Query: 1069 RYVRENSKCYFVIDLEL 1085
            +Y+RE+ + YF+I LEL
Sbjct: 1142 QYIRESERSYFLIILEL 1158


>gi|388458328|gb|AFK31030.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1350 bits (3495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 662/1101 (60%), Positives = 826/1101 (75%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADVLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLPVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458330|gb|AFK31031.1| phytochrome b, partial [Oryza rufipogon]
 gi|388458368|gb|AFK31050.1| phytochrome b, partial [Oryza rufipogon]
 gi|388458370|gb|AFK31051.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1350 bits (3493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 662/1101 (60%), Positives = 826/1101 (75%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|240119391|dbj|BAH79244.1| phytochrome B [Cardamine nipponica]
          Length = 1184

 Score = 1350 bits (3493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1097 (59%), Positives = 832/1097 (75%), Gaps = 55/1097 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEG--VPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ +   G  VPE+QITAYLS+IQRGG IQPF
Sbjct: 67   IQQYTVDARLHAVFEQSGGSGKSFDYSQSLKTTTYGSSVPEQQITAYLSRIQRGGFIQPF 126

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GCM+AV+E TFRIIGYSEN  EML L  +S    E  E+  + G D R+LF P S   L 
Sbjct: 127  GCMIAVDESTFRIIGYSENAREMLGLMPQSVPSLEKPEILAM-GTDVRSLFAPSSSILLE 185

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +R+I++LNP+ +HS  ++  KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQS
Sbjct: 186  RAFVARDITILNPVWIHS--KNTGKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQS 243

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AISRLQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R D
Sbjct: 244  QKLAVRAISRLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDD 303

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV+++Q   L Q +CLV STLR+P
Sbjct: 304  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVLLVQDDRLSQSMCLVGSTLRAP 363

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCHHTSPRYIPFPL 381
            HGCH QYM NMGSIASL MAVIIN            ++SMKLWGLVVCHHT+ R IPFPL
Sbjct: 364  HGCHSQYMANMGSIASLAMAVIINGNEEDGSNAGGGRNSMKLWGLVVCHHTTSRCIPFPL 423

Query: 382  RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
            RYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQSPSIMDLV
Sbjct: 424  RYACEFLMQAFGLQLNMELQLALQMSEKRVLRMQTLLCDMLLRDSPAGIVTQSPSIMDLV 483

Query: 442  KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
            KCDGAA  Y G+ + +GV PTE+Q+KDI  WLL NH D TGLSTDSL EAGYPGAA LG 
Sbjct: 484  KCDGAAFLYHGKYYPLGVAPTEAQIKDIVDWLLANHADSTGLSTDSLGEAGYPGAAALGD 543

Query: 502  AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
            AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+
Sbjct: 544  AVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKS 603

Query: 562  RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK-VQGNTQ--QNGSKMQGVDELSSVAC 618
            RS PWE +E++AIHSLQ+++RDSF+E E   +SK V G  Q  ++ S  QG DEL +VA 
Sbjct: 604  RSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKAVDGAVQPCRDMSGEQGNDELGAVAR 663

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+ +++++E++  V  
Sbjct: 664  EMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEETVNK 723

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            L+ RAL G+EDKNVE+KL+ F  + Q   V+++VNAC+S+DY NN+ GVCFVGQD+T +K
Sbjct: 724  LLSRALRGDEDKNVEVKLKTFSPELQGKAVFMIVNACSSKDYLNNIVGVCFVGQDVTGQK 783

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794
            ++MDKFI +QGDY+AI+ + NPLIPPIFA+DEN  C EWNAA+EK+TG  R EVIG    
Sbjct: 784  IVMDKFINIQGDYKAIVHNPNPLIPPIFAADENTICLEWNAALEKLTGVSRGEVIGKMLV 843

Query: 795  --------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAE 828
                                      I GQ TE FPF FF+R G+FV+  LTA++R   +
Sbjct: 844  GEVFGNCCRLKGPDALTRFMIVLHNAIGGQETEKFPFPFFDRNGKFVQALLTANKRVSLD 903

Query: 829  GKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLE 888
            GKVIG FCF+QI  P+LQ AL  Q  +D + + K KELAYI Q +K+PL+G+RF + LLE
Sbjct: 904  GKVIGAFCFLQIPSPELQQALAVQRRQDTECFTKAKELAYICQVIKSPLSGLRFANSLLE 963

Query: 889  SSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVM 948
            +++++E+Q+Q+LETS +CE+QI  I+  MDL  IE+G+ EL   EF LG+I++A+VSQ M
Sbjct: 964  ATNLNEDQKQFLETSVSCEKQISRIVGDMDLESIEDGSFELVRAEFFLGSIINAIVSQAM 1023

Query: 949  VLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGL 1008
             LLR++ L L+ DIPEEIK+ ++ GD+ R+Q +L++FL  ++R+APS + WVEI +    
Sbjct: 1024 FLLRERGLQLIRDIPEEIKSTAVYGDQTRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVS 1082

Query: 1009 KLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRV 1068
            K   D  + +  +FR+  PGEG+P  L+ DM++  ++WT+PEGLGL + RK+L +MNG V
Sbjct: 1083 KQTADGLRAIRTEFRMACPGEGLPPELVRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEV 1141

Query: 1069 RYVRENSKCYFVIDLEL 1085
            +Y+RE+ + YF+I LEL
Sbjct: 1142 QYIRESERSYFLIILEL 1158


>gi|240119399|dbj|BAH79248.1| phytochrome B [Cardamine nipponica]
          Length = 1184

 Score = 1349 bits (3492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1097 (60%), Positives = 832/1097 (75%), Gaps = 55/1097 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEG--VPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ +   G  VPE+QITAYLS+IQRGG IQPF
Sbjct: 67   IQQYTVDARLHAVFEQSGGSGKSFDYSQSLKTTTYGSSVPEQQITAYLSRIQRGGFIQPF 126

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GCM+AV+E TFRIIGYSEN  EML L  +S    E  E+  + G D R+LF P S   L 
Sbjct: 127  GCMIAVDESTFRIIGYSENAREMLGLMPQSVPSLEKPEILAM-GTDVRSLFAPSSSILLE 185

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +R+I++LNP+ +HS  ++  KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQS
Sbjct: 186  RAFVARDITILNPVWIHS--KNTGKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQS 243

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AISRLQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R D
Sbjct: 244  QKLAVRAISRLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDD 303

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV+++Q   L Q +CLV STLR+P
Sbjct: 304  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVLLVQDDRLSQSMCLVGSTLRAP 363

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCHHTSPRYIPFPL 381
            HGCH QYM NMGSIASL MAVIIN            ++SMKLWGLVVCHHTS R IPFPL
Sbjct: 364  HGCHSQYMANMGSIASLAMAVIINGNEEDGSNAGGGRNSMKLWGLVVCHHTSSRCIPFPL 423

Query: 382  RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
            RYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQSPSIMDLV
Sbjct: 424  RYACEFLMQAFGLQLNMELQLALQMSEKRVLRMQTLLCDMLLRDSPAGIVTQSPSIMDLV 483

Query: 442  KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
            KCDGAA  Y G+ + +GV PTE+Q+KDI  WLL NH D TGLSTDSL EAGYPGAA LG 
Sbjct: 484  KCDGAAFLYHGKYYPLGVAPTEAQIKDIVDWLLANHADSTGLSTDSLGEAGYPGAAALGD 543

Query: 502  AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
            AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+
Sbjct: 544  AVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKS 603

Query: 562  RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK-VQGNTQ--QNGSKMQGVDELSSVAC 618
            RS PWE +E++AIHSLQ+++RDSF+E E   +SK V G  Q  ++ S  QG DEL +VA 
Sbjct: 604  RSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKAVDGAVQPCRDMSGEQGNDELGAVAR 663

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+ +++++E++  V  
Sbjct: 664  EMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEETVNK 723

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            L+ RAL G+EDKNVE+KL+ F  + Q   V+++VNAC+S+DY NN+ GVCFVGQD+T +K
Sbjct: 724  LLSRALRGDEDKNVEVKLKTFSPELQGKAVFMIVNACSSKDYLNNIVGVCFVGQDVTGQK 783

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794
            ++MDKFI +QGDY+AI+ + NPLIPPIFA+DEN  C EWNAA+EK+TG  R EVIG    
Sbjct: 784  IVMDKFINIQGDYKAIVHNPNPLIPPIFAADENTICLEWNAALEKLTGVSRGEVIGKMLV 843

Query: 795  --------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAE 828
                                      I GQ TE FPF FF+R G+FV+  LTA++R   +
Sbjct: 844  GEVFGNCCRLKGPDALTRFMIVLHNAIGGQETEKFPFPFFDRNGKFVQALLTANKRVSLD 903

Query: 829  GKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLE 888
            GKVIG FCF+QI  P+LQ AL  Q  +D + + K KELAYI Q +K+PL+G+RF + LLE
Sbjct: 904  GKVIGAFCFLQIPSPELQQALAVQRRQDTECFTKAKELAYICQVIKSPLSGLRFANSLLE 963

Query: 889  SSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVM 948
            +++++E+Q+Q+LETS +CE+QI  I+  MDL  IE+G+ EL   EF LG+I++A+VSQ M
Sbjct: 964  ATNLNEDQKQFLETSVSCEKQISRIVGDMDLESIEDGSFELVRAEFFLGSIINAIVSQAM 1023

Query: 949  VLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGL 1008
             LLR++ L L+ DIPEEIK+ ++ GD+ R+Q +L++FL  ++R+APS + WVEI +    
Sbjct: 1024 FLLRERGLQLIRDIPEEIKSTAVYGDQTRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVS 1082

Query: 1009 KLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRV 1068
            K   D  + +  +FR+  PGEG+P  L+ DM++  ++WT+PEGLGL + RK+L +MNG V
Sbjct: 1083 KQTGDGLRAIRTEFRMACPGEGLPPELVRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEV 1141

Query: 1069 RYVRENSKCYFVIDLEL 1085
            +Y+RE+ + YF+I LEL
Sbjct: 1142 QYIRESERSYFLIILEL 1158


>gi|158513196|sp|A2XFW2.2|PHYB_ORYSI RecName: Full=Phytochrome B
          Length = 1171

 Score = 1349 bits (3492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 826/1101 (75%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFPFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458362|gb|AFK31047.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1349 bits (3492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 662/1101 (60%), Positives = 826/1101 (75%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSDASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458210|gb|AFK30971.1| phytochrome b, partial [Oryza sativa Indica Group]
          Length = 1171

 Score = 1349 bits (3492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 826/1101 (75%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVTESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE+Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEAQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|240119403|dbj|BAH79250.1| phytochrome B [Cardamine nipponica]
          Length = 1184

 Score = 1349 bits (3492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1097 (59%), Positives = 831/1097 (75%), Gaps = 55/1097 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEG--VPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ +   G  VPE+QITAYLS+IQRGG IQPF
Sbjct: 67   IQQYTVDARLHAVFEQSGGSGKSFDYSQSLKTTTYGSSVPEQQITAYLSRIQRGGFIQPF 126

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GCM+AV+E TFRIIGYSEN  EML L  +S    E  E+  + G D R+LF P S   L 
Sbjct: 127  GCMIAVDESTFRIIGYSENAREMLGLMPQSVPSLEKPEILAM-GTDVRSLFAPSSSILLE 185

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +R+I++LNP+ +HS  ++  KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQS
Sbjct: 186  RAFVARDITILNPVWIHS--KNTGKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQS 243

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AISRLQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R D
Sbjct: 244  QKLAVRAISRLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDD 303

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV+++Q   L Q +CLV STLR+P
Sbjct: 304  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVLLVQDDRLSQSMCLVGSTLRAP 363

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCHHTSPRYIPFPL 381
            HGCH QYM NMGSIASL MAVIIN            ++SMKLWGLVVCHHTS R IPFPL
Sbjct: 364  HGCHSQYMANMGSIASLAMAVIINGNEEDGSNAGGGRNSMKLWGLVVCHHTSSRCIPFPL 423

Query: 382  RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
            RYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQSPSIMD V
Sbjct: 424  RYACEFLMQAFGLQLNMELQLALQMSEKRVLRMQTLLCDMLLRDSPAGIVTQSPSIMDFV 483

Query: 442  KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
            KCDGAA  Y G+ + +GV PTE+Q+KDI  WLL NH D TGLSTDSL EAGYPGAA LG 
Sbjct: 484  KCDGAAFLYHGKYYPLGVAPTEAQIKDIVDWLLANHADSTGLSTDSLGEAGYPGAAALGD 543

Query: 502  AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
            AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+
Sbjct: 544  AVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKS 603

Query: 562  RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK-VQGNTQ--QNGSKMQGVDELSSVAC 618
            RS PWE +E++AIHSLQ+++RDSF+E E   +SK V G  Q  ++ S  QG DEL +VA 
Sbjct: 604  RSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKAVDGAVQPCRDMSGEQGNDELGAVAR 663

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+ +++++E++  V  
Sbjct: 664  EMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEETVNK 723

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            L+ RAL G+EDKNVE+KL+ F  + Q   V+++VNAC+S+DY NN+ GVCFVGQD+T +K
Sbjct: 724  LLSRALRGDEDKNVEVKLKTFSPELQGKAVFMIVNACSSKDYLNNIVGVCFVGQDVTGQK 783

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794
            ++MDKFI +QGDY+AI+ + NPLIPPIFA+DEN  C EWNAA+EK+TG  R EVIG    
Sbjct: 784  IVMDKFINIQGDYKAIVHNPNPLIPPIFAADENTICLEWNAALEKLTGVSRGEVIGKMLV 843

Query: 795  --------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAE 828
                                      I GQ TE FPF FF+R G+FV+  LTA++R   +
Sbjct: 844  GEVFGNCCRLKGPDALTRFMIVLHNAIGGQETEKFPFPFFDRNGKFVQALLTANKRVSLD 903

Query: 829  GKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLE 888
            GKVIG FCF+QI  P+LQ AL  Q  +D + + K KELAYI Q +K+PL+G+RF + LLE
Sbjct: 904  GKVIGAFCFLQIPSPELQQALAVQRRQDTECFTKAKELAYICQVIKSPLSGLRFANSLLE 963

Query: 889  SSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVM 948
            +++++E+Q+Q+LETS +CE+QI  I+  MDL  IE+G+ EL   EF LG+I++A+VSQ M
Sbjct: 964  ATNLNEDQKQFLETSVSCEKQISRIVGDMDLESIEDGSFELVRAEFFLGSIINAIVSQAM 1023

Query: 949  VLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGL 1008
             LLR++ L L+ DIPEEIK+ ++ GD+ R+Q +L++FL  ++R+APS + WVEI +    
Sbjct: 1024 FLLRERGLQLIRDIPEEIKSTAVYGDQTRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVS 1082

Query: 1009 KLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRV 1068
            K   D  + +  +FR+  PGEG+P  L+ DM++  ++WT+PEGLGL + RK+L +MNG V
Sbjct: 1083 KQTADGLRAIRTEFRMACPGEGLPPELVRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEV 1141

Query: 1069 RYVRENSKCYFVIDLEL 1085
            +Y+RE+ + YF+I LEL
Sbjct: 1142 QYIRESERSYFLIILEL 1158


>gi|388458316|gb|AFK31024.1| phytochrome b, partial [Oryza nivara]
          Length = 1171

 Score = 1349 bits (3491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 663/1101 (60%), Positives = 825/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQDI
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDI 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+QI  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQISKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|240119401|dbj|BAH79249.1| phytochrome B [Cardamine nipponica]
          Length = 1184

 Score = 1349 bits (3491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1097 (59%), Positives = 832/1097 (75%), Gaps = 55/1097 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEG--VPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ +   G  VPE+QITAYLS+IQRGG IQPF
Sbjct: 67   IQQYTVDARLHAVFEQSGGSGKSFDYSQSLKTTTYGSSVPEQQITAYLSRIQRGGFIQPF 126

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GCM+AV+E TFRIIGYSEN  EML L  +S    E  E+  + G D R+LF P S   L 
Sbjct: 127  GCMIAVDESTFRIIGYSENAREMLGLMPQSVPSLEKPEILAM-GTDVRSLFAPSSSILLE 185

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +R+I++LNP+ +HS  ++  KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQS
Sbjct: 186  RAFVARDITILNPVWIHS--KNTGKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQS 243

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AISRLQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R D
Sbjct: 244  QKLAVRAISRLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRDD 303

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV+++Q   L Q +CLV STLR+P
Sbjct: 304  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVLLVQDDRLSQSMCLVGSTLRAP 363

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCHHTSPRYIPFPL 381
            HGCH QYM NMGSIASL MAVIIN            ++SMKLWGLVVCHHTS R IPFPL
Sbjct: 364  HGCHSQYMANMGSIASLAMAVIINGNEEDGSNAGGGRNSMKLWGLVVCHHTSSRCIPFPL 423

Query: 382  RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
            RYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQSPSIMDLV
Sbjct: 424  RYACEFLMQAFGLQLNMELQLALQMSEKRVLRMQTLLCDMLLRDSPAGIVTQSPSIMDLV 483

Query: 442  KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
            KCDGAA  Y G+ + +GV PTE+Q+KDI  WLL NH D TGLSTDSL EAGYPGAA LG 
Sbjct: 484  KCDGAAFLYHGKYYPLGVAPTEAQIKDIVDWLLANHADSTGLSTDSLGEAGYPGAAALGD 543

Query: 502  AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
            AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+
Sbjct: 544  AVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKS 603

Query: 562  RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK-VQGNTQ--QNGSKMQGVDELSSVAC 618
            RS PWE +E++AIHSLQ+++RDSF+E E   +SK V G  Q  ++ S  QG DEL +VA 
Sbjct: 604  RSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKAVDGAVQPCRDMSGEQGNDELGAVAR 663

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+ +++++E++  V  
Sbjct: 664  EMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEETVNK 723

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            L+ RAL G+EDKNVE+KL+ F  + Q   V+++VNAC+S+DY NN+ GVCFVGQD+T +K
Sbjct: 724  LLSRALRGDEDKNVEVKLKTFSPELQGKAVFMIVNACSSKDYLNNIVGVCFVGQDVTGQK 783

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794
            ++MDKFI +QGDY+AI+ + NPLIPPIFA+D+N  C EWNAA+EK+TG  R EVIG    
Sbjct: 784  IVMDKFINIQGDYKAIVHNPNPLIPPIFAADDNTICLEWNAALEKLTGVSRGEVIGKMLV 843

Query: 795  --------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAE 828
                                      I GQ TE FPF FF+R G+FV+  LTA++R   +
Sbjct: 844  GEVFGNCCRLKGPDALTRFMIVLHNAIGGQETEKFPFPFFDRNGKFVQALLTANKRVSLD 903

Query: 829  GKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLE 888
            GKVIG FCF+QI  P+LQ AL  Q  +D + + K KELAYI Q +K+PL+G+RF + LLE
Sbjct: 904  GKVIGAFCFLQIPSPELQQALAVQRRQDTECFTKAKELAYICQVIKSPLSGLRFANSLLE 963

Query: 889  SSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVM 948
            +++++E+Q+Q+LETS +CE+QI  I+  MDL  IE+G+ EL   EF LG+I++A+VSQ M
Sbjct: 964  ATNLNEDQKQFLETSVSCEKQISRIVGDMDLESIEDGSFELVRAEFFLGSIINAIVSQAM 1023

Query: 949  VLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGL 1008
             LLR++ L L+ DIPEEIK+ ++ GD+ R+Q +L++FL  ++R+APS + WVEI +    
Sbjct: 1024 FLLRERGLQLIRDIPEEIKSTAVYGDQTRIQQLLAEFLLSIIRYAPSQE-WVEIHLSQVS 1082

Query: 1009 KLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRV 1068
            K   D  + +  +FR+  PGEG+P  L+ DM++  ++WT+PEGLGL + RK+L +MNG V
Sbjct: 1083 KQTADGLRAIRTEFRMACPGEGLPPELVRDMFHS-SRWTSPEGLGLSVCRKILKLMNGEV 1141

Query: 1069 RYVRENSKCYFVIDLEL 1085
            +Y+RE+ + YF+I LEL
Sbjct: 1142 QYIRESERSYFLIILEL 1158


>gi|388458318|gb|AFK31025.1| phytochrome b, partial [Oryza nivara]
          Length = 1171

 Score = 1349 bits (3491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 825/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRRI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|39777267|gb|AAR30903.1| phytochrome B [Sorghum bicolor]
          Length = 1178

 Score = 1349 bits (3491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1099 (59%), Positives = 829/1099 (75%), Gaps = 55/1099 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+YS+S+ +PP    E+QI AYLS+IQRGG IQPFGC
Sbjct: 71   VAQYTLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPFGC 130

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL------IGIDARTLFTPPSGASL 151
             LAV ++ +FR++ +SEN  ++LDL        L+        +G DAR LF+P S   L
Sbjct: 131  TLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSAAPPPVSLGADARLLFSPSSAVLL 190

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQ
Sbjct: 191  ERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQ 248

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            SQKLAV AISRLQALPGGDI LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR 
Sbjct: 249  SQKLAVRAISRLQALPGGDIKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRRD 308

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            +LEPYLG+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   + QPLCLV STLR+
Sbjct: 309  NLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGMSQPLCLVGSTLRA 368

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPF 379
            PHGCH QYM NMGSIASLVMAVII+S              +MKLWGLVVCHHTSPR IPF
Sbjct: 369  PHGCHAQYMANMGSIASLVMAVIISSGGDDEQTGRGGISSAMKLWGLVVCHHTSPRCIPF 428

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSIMD
Sbjct: 429  PLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMD 488

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAALYY G+ + +GVTPTESQ+KDI  WL   HGD TGLSTDSLA+AGY GAA L
Sbjct: 489  LVKCDGAALYYHGKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADAGYLGAAAL 548

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVV
Sbjct: 549  GDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVV 608

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELSSV 616
            K+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G++ELSSV
Sbjct: 609  KSRSLPWENAEMDAIHSLQLILRDSFRDAAEGTSNSKAIVNGQVQLGELELRGINELSSV 668

Query: 617  ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
            A EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+++++ +ES+  V
Sbjct: 669  AREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEEIV 728

Query: 677  ENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736
            E L+ RAL GEEDKNVE+KL+ F  ++ +  ++++VNAC+SRDY  N+ GVCFVGQD+T 
Sbjct: 729  EKLLSRALRGEEDKNVEIKLKTFGSEQSNGAIFVIVNACSSRDYTQNIVGVCFVGQDVTG 788

Query: 737  EKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-- 794
            +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN  CSEWN AMEK+TGW R EV+G  
Sbjct: 789  QKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTSCSEWNTAMEKLTGWSRGEVVGKF 848

Query: 795  ----------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTD 826
                                        I GQ  E FPF FF++ G++V+  LTA+ R+ 
Sbjct: 849  LIGEVFGSFCRLKGPDALTKFMVVIHNAIGGQDYEKFPFSFFDKNGKYVQALLTANTRSK 908

Query: 827  AEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKL 886
             +GK IG FCF+QI   ++Q A E Q  ++   YA++KELAYI QE+KNPL+GIRF + L
Sbjct: 909  MDGKSIGAFCFLQIASAEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSL 968

Query: 887  LESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQ 946
            L+ + ++++QRQ+LET  ACE+Q+  I+    L+ IE+G++ L+  EF  G++++AVVSQ
Sbjct: 969  LQMTDLNDDQRQFLETCSACEKQMSKIVKDTTLQSIEDGSLVLEKSEFSFGDVMNAVVSQ 1028

Query: 947  VMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLP 1006
             M+LLR+++L L+ DIP+EIK  S  GD+ R+Q VL+DFL  +VR APS +GWVEI+V P
Sbjct: 1029 AMLLLRERDLQLIRDIPDEIKDASAYGDQFRIQQVLADFLLSMVRSAPSENGWVEIQVRP 1088

Query: 1007 GLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNG 1066
             +K   D        FR   PGEG+P+ +++DM++  +QW+T EG+GL   RK+L +M G
Sbjct: 1089 NVKQNSDGTDTELFIFRFACPGEGLPADIVQDMFSN-SQWSTQEGVGLSTCRKILKLMGG 1147

Query: 1067 RVRYVRENSKCYFVIDLEL 1085
             V+Y+RE+ + +F+I LEL
Sbjct: 1148 EVQYIRESERSFFLIVLEL 1166


>gi|39777291|gb|AAR30915.1| phytochrome B [Sorghum bicolor subsp. x drummondii]
          Length = 1177

 Score = 1348 bits (3490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1099 (59%), Positives = 829/1099 (75%), Gaps = 55/1099 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+YS+S+ +PP    E+QI AYLS+IQRGG IQPFGC
Sbjct: 70   VAQYTLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPFGC 129

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL------IGIDARTLFTPPSGASL 151
             LAV ++ +FR++ +SEN  ++LDL        L+        +G DAR LF+P S   L
Sbjct: 130  TLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSAAPPPVSLGADARLLFSPSSAVLL 189

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQ
Sbjct: 190  ERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQ 247

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            SQKLAV AISRLQALPGGDI LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR 
Sbjct: 248  SQKLAVRAISRLQALPGGDIKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRRD 307

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            +LEPYLG+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   + QPLCLV STLR+
Sbjct: 308  NLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGMSQPLCLVGSTLRA 367

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPF 379
            PHGCH QYM NMGSIASLVMAVII+S              +MKLWGLVVCHHTSPR IPF
Sbjct: 368  PHGCHAQYMANMGSIASLVMAVIISSGGDDEQTGRGGISSAMKLWGLVVCHHTSPRCIPF 427

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSIMD
Sbjct: 428  PLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMD 487

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAALYY G+ + +GVTPTESQ+KDI  WL   HGD TGLSTDSLA+AGY GAA L
Sbjct: 488  LVKCDGAALYYHGKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADAGYLGAAAL 547

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVV
Sbjct: 548  GDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVV 607

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELSSV 616
            K+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G++ELSSV
Sbjct: 608  KSRSLPWENAEMDAIHSLQLILRDSFRDAAEGTSNSKAIVNGQVQLGELELRGINELSSV 667

Query: 617  ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
            A EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+++++ +ES+  V
Sbjct: 668  AREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEEIV 727

Query: 677  ENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736
            E L+ RAL GEEDKNVE+KL+ F  ++ +  ++++VNAC+SRDY  N+ GVCFVGQD+T 
Sbjct: 728  EKLLSRALRGEEDKNVEIKLKTFGSEQSNGAIFVIVNACSSRDYTQNIVGVCFVGQDVTG 787

Query: 737  EKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-- 794
            +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN  CSEWN AMEK+TGW R EV+G  
Sbjct: 788  QKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTSCSEWNTAMEKLTGWSRGEVVGKF 847

Query: 795  ----------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTD 826
                                        I GQ  E FPF FF++ G++V+  LTA+ R+ 
Sbjct: 848  LIGEVFGSFCRLKGPDALTKFMVVIHNAIGGQDYEKFPFSFFDKNGKYVQALLTANTRSK 907

Query: 827  AEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKL 886
             +GK IG FCF+QI   ++Q A E Q  ++   YA++KELAYI QE+KNPL+GIRF + L
Sbjct: 908  MDGKSIGAFCFLQIASAEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSL 967

Query: 887  LESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQ 946
            L+ + ++++QRQ+LET  ACE+Q+  I+    L+ IE+G++ L+  EF  G++++AVVSQ
Sbjct: 968  LQMTDLNDDQRQFLETCSACEKQMSKIVKDATLQSIEDGSLVLEKSEFSFGDVMNAVVSQ 1027

Query: 947  VMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLP 1006
             M+LLR+++L L+ DIP+EIK  S  GD+ R+Q VL+DFL  +VR APS +GWVEI+V P
Sbjct: 1028 AMLLLRERDLQLIRDIPDEIKDASAYGDQFRIQQVLADFLLSMVRSAPSENGWVEIQVRP 1087

Query: 1007 GLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNG 1066
             +K   D        FR   PGEG+P+ +++DM++  +QW+T EG+GL   RK+L +M G
Sbjct: 1088 NVKQNSDGTDTELFIFRFACPGEGLPADIVQDMFSN-SQWSTQEGVGLSTCRKILKLMGG 1146

Query: 1067 RVRYVRENSKCYFVIDLEL 1085
             V+Y+RE+ + +F+I LEL
Sbjct: 1147 EVQYIRESERSFFLIVLEL 1165


>gi|242041157|ref|XP_002467973.1| hypothetical protein SORBIDRAFT_01g037340 [Sorghum bicolor]
 gi|39777261|gb|AAR30900.1| phytochrome B [Sorghum bicolor]
 gi|39777263|gb|AAR30901.1| phytochrome B [Sorghum bicolor]
 gi|39777265|gb|AAR30902.1| phytochrome B [Sorghum bicolor]
 gi|39777269|gb|AAR30904.1| phytochrome B [Sorghum bicolor]
 gi|39777275|gb|AAR30907.1| phytochrome B [Sorghum bicolor subsp. verticilliflorum]
 gi|39777277|gb|AAR30908.1| phytochrome B [Sorghum bicolor subsp. verticilliflorum]
 gi|39777279|gb|AAR30909.1| phytochrome B [Sorghum bicolor subsp. verticilliflorum]
 gi|39777281|gb|AAR30910.1| phytochrome B [Sorghum bicolor subsp. verticilliflorum]
 gi|39777283|gb|AAR30911.1| phytochrome B [Sorghum bicolor subsp. verticilliflorum]
 gi|39777285|gb|AAR30912.1| phytochrome B [Sorghum bicolor subsp. verticilliflorum]
 gi|39777287|gb|AAR30913.1| phytochrome B [Sorghum bicolor subsp. verticilliflorum]
 gi|241921827|gb|EER94971.1| hypothetical protein SORBIDRAFT_01g037340 [Sorghum bicolor]
          Length = 1178

 Score = 1348 bits (3490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1099 (59%), Positives = 829/1099 (75%), Gaps = 55/1099 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+YS+S+ +PP    E+QI AYLS+IQRGG IQPFGC
Sbjct: 71   VAQYTLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPFGC 130

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL------IGIDARTLFTPPSGASL 151
             LAV ++ +FR++ +SEN  ++LDL        L+        +G DAR LF+P S   L
Sbjct: 131  TLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSAAPPPVSLGADARLLFSPSSAVLL 190

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQ
Sbjct: 191  ERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQ 248

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            SQKLAV AISRLQALPGGDI LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR 
Sbjct: 249  SQKLAVRAISRLQALPGGDIKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRRD 308

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            +LEPYLG+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   + QPLCLV STLR+
Sbjct: 309  NLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGMSQPLCLVGSTLRA 368

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPF 379
            PHGCH QYM NMGSIASLVMAVII+S              +MKLWGLVVCHHTSPR IPF
Sbjct: 369  PHGCHAQYMANMGSIASLVMAVIISSGGDDEQTGRGGISSAMKLWGLVVCHHTSPRCIPF 428

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSIMD
Sbjct: 429  PLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMD 488

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAALYY G+ + +GVTPTESQ+KDI  WL   HGD TGLSTDSLA+AGY GAA L
Sbjct: 489  LVKCDGAALYYHGKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADAGYLGAAAL 548

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVV
Sbjct: 549  GDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVV 608

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELSSV 616
            K+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G++ELSSV
Sbjct: 609  KSRSLPWENAEMDAIHSLQLILRDSFRDAAEGTSNSKAIVNGQVQLGELELRGINELSSV 668

Query: 617  ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
            A EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+++++ +ES+  V
Sbjct: 669  AREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEEIV 728

Query: 677  ENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736
            E L+ RAL GEEDKNVE+KL+ F  ++ +  ++++VNAC+SRDY  N+ GVCFVGQD+T 
Sbjct: 729  EKLLSRALRGEEDKNVEIKLKTFGSEQSNGAIFVIVNACSSRDYTQNIVGVCFVGQDVTG 788

Query: 737  EKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-- 794
            +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN  CSEWN AMEK+TGW R EV+G  
Sbjct: 789  QKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTSCSEWNTAMEKLTGWSRGEVVGKF 848

Query: 795  ----------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTD 826
                                        I GQ  E FPF FF++ G++V+  LTA+ R+ 
Sbjct: 849  LIGEVFGSFCRLKGPDALTKFMVVIHNAIGGQDYEKFPFSFFDKNGKYVQALLTANTRSK 908

Query: 827  AEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKL 886
             +GK IG FCF+QI   ++Q A E Q  ++   YA++KELAYI QE+KNPL+GIRF + L
Sbjct: 909  MDGKSIGAFCFLQIASAEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSL 968

Query: 887  LESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQ 946
            L+ + ++++QRQ+LET  ACE+Q+  I+    L+ IE+G++ L+  EF  G++++AVVSQ
Sbjct: 969  LQMTDLNDDQRQFLETCSACEKQMSKIVKDATLQSIEDGSLVLEKSEFSFGDVMNAVVSQ 1028

Query: 947  VMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLP 1006
             M+LLR+++L L+ DIP+EIK  S  GD+ R+Q VL+DFL  +VR APS +GWVEI+V P
Sbjct: 1029 AMLLLRERDLQLIRDIPDEIKDASAYGDQFRIQQVLADFLLSMVRSAPSENGWVEIQVRP 1088

Query: 1007 GLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNG 1066
             +K   D        FR   PGEG+P+ +++DM++  +QW+T EG+GL   RK+L +M G
Sbjct: 1089 NVKQNSDGTDTELFIFRFACPGEGLPADIVQDMFSN-SQWSTQEGVGLSTCRKILKLMGG 1147

Query: 1067 RVRYVRENSKCYFVIDLEL 1085
             V+Y+RE+ + +F+I LEL
Sbjct: 1148 EVQYIRESERSFFLIVLEL 1166


>gi|39777289|gb|AAR30914.1| phytochrome B [Sorghum bicolor subsp. verticilliflorum]
          Length = 1178

 Score = 1348 bits (3490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1099 (59%), Positives = 829/1099 (75%), Gaps = 55/1099 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+YS+S+ +PP    E+QI AYLS+IQRGG IQPFGC
Sbjct: 71   VAQYTLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPFGC 130

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL------IGIDARTLFTPPSGASL 151
             LAV ++ +FR++ +SEN  ++LDL        L+        +G DAR LF+P S   L
Sbjct: 131  TLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSAAPPPVSLGADARLLFSPSSAVLL 190

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQ
Sbjct: 191  ERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQ 248

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            SQKLAV AISRLQALPGGDI LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR 
Sbjct: 249  SQKLAVRAISRLQALPGGDIKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRRD 308

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            +LEPYLG+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   + QPLCLV STLR+
Sbjct: 309  NLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGMSQPLCLVGSTLRA 368

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPF 379
            PHGCH QYM NMGSIASLVMAVII+S              +MKLWGLVVCHHTSPR IPF
Sbjct: 369  PHGCHAQYMANMGSIASLVMAVIISSGGDDEQTGRGGISSAMKLWGLVVCHHTSPRCIPF 428

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSIMD
Sbjct: 429  PLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMD 488

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAALYY G+ + +GVTPTESQ+KDI  WL   HGD TGLSTDSLA+AGY GAA L
Sbjct: 489  LVKCDGAALYYHGKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADAGYLGAAAL 548

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVV
Sbjct: 549  GDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVV 608

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELSSV 616
            K+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G++ELSSV
Sbjct: 609  KSRSLPWENAEMDAIHSLQLILRDSFRDAAEGTSNSKAIVNGQVQLGELELRGINELSSV 668

Query: 617  ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
            A EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+++++ +ES+  V
Sbjct: 669  AREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEEIV 728

Query: 677  ENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736
            E L+ RAL GEEDKNVE+KL+ F  ++ +  ++++VNAC+SRDY  N+ GVCFVGQD+T 
Sbjct: 729  EKLLSRALRGEEDKNVEIKLKTFGSEQSNGAIFVIVNACSSRDYTQNIVGVCFVGQDVTG 788

Query: 737  EKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-- 794
            +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN  CSEWN AMEK+TGW R EV+G  
Sbjct: 789  QKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTSCSEWNTAMEKLTGWSRGEVVGKF 848

Query: 795  ----------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTD 826
                                        I GQ  E FPF FF++ G++V+  LTA+ R+ 
Sbjct: 849  LIGEVFGSFCRLKGPDALTKFMVVIHNAIGGQDYEKFPFSFFDKNGKYVQALLTANTRSK 908

Query: 827  AEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKL 886
             +GK IG FCF+QI   ++Q A E Q  ++   YA++KELAYI QE+KNPL+GIRF + L
Sbjct: 909  MDGKSIGAFCFLQIASAEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSL 968

Query: 887  LESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQ 946
            L+ + ++++QRQ+LET  ACE+Q+  I+    L+ IE+G++ L+  EF  G++++AVVSQ
Sbjct: 969  LQMTDLNDDQRQFLETCSACEKQMSKIVKDATLQSIEDGSLVLEKSEFSFGDVMNAVVSQ 1028

Query: 947  VMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLP 1006
             M+LLR+++L L+ DIP+EIK  S  GD+ R+Q VL+DFL  +VR APS +GWVEI+V P
Sbjct: 1029 AMLLLRERDLQLIRDIPDEIKDASAYGDQFRIQQVLADFLLSMVRSAPSENGWVEIQVRP 1088

Query: 1007 GLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNG 1066
             +K   D        FR   PGEG+P+ +++DM++  +QW+T EG+GL   RK+L +M G
Sbjct: 1089 NVKQNSDGTDTELFIFRFACPGEGLPADIVQDMFSN-SQWSTQEGVGLSTCRKILKLMGG 1147

Query: 1067 RVRYVRENSKCYFVIDLEL 1085
             V+Y+RE+ + +F+I LEL
Sbjct: 1148 EVQYIRESERSFFLIVLEL 1166


>gi|388458276|gb|AFK31004.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1348 bits (3490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 826/1101 (75%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458324|gb|AFK31028.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1348 bits (3489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 825/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQ +RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQTSRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458262|gb|AFK30997.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1348 bits (3489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 825/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELN-------GLIGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPASLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  ++ DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVHDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458232|gb|AFK30982.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1348 bits (3489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 826/1101 (75%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LD+        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDVSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458234|gb|AFK30983.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1348 bits (3488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 825/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYGFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRRI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|122247122|sp|Q10MG9.1|PHYB_ORYSJ RecName: Full=Phytochrome B
 gi|30578178|dbj|BAC76432.1| phytochrome B [Oryza sativa Japonica Group]
 gi|57506674|dbj|BAD86669.1| phytochrome B [Oryza sativa Japonica Group]
 gi|108707763|gb|ABF95558.1| Phytochrome B, putative, expressed [Oryza sativa Japonica Group]
 gi|388458242|gb|AFK30987.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458278|gb|AFK31005.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458280|gb|AFK31006.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458284|gb|AFK31008.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1348 bits (3488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 826/1101 (75%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458230|gb|AFK30981.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458288|gb|AFK31010.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458292|gb|AFK31012.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458294|gb|AFK31013.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458296|gb|AFK31014.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458300|gb|AFK31016.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458306|gb|AFK31019.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458364|gb|AFK31048.1| phytochrome b, partial [Oryza rufipogon]
 gi|388458372|gb|AFK31052.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1347 bits (3487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 825/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458248|gb|AFK30990.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458250|gb|AFK30991.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1347 bits (3487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 825/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  ++ DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVHDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458346|gb|AFK31039.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1347 bits (3486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV V Q   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVTQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    + ++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPILVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458350|gb|AFK31041.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1347 bits (3486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 826/1101 (75%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM +MGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMADMGSIASLVMAVIISSGGDDDHNIARGSVPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLPRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|222624796|gb|EEE58928.1| hypothetical protein OsJ_10581 [Oryza sativa Japonica Group]
          Length = 1128

 Score = 1347 bits (3486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 826/1101 (75%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 19   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 78

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 79   TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 138

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 139  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 196

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 197  QSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRR 256

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 257  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 316

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 317  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVCHHTSPRCI 376

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 377  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 436

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 437  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 496

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 497  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 556

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 557  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 616

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 617  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 676

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 677  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 736

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 737  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 796

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 797  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 856

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 857  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 916

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 917  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 976

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 977  SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1036

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1037 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1095

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1096 GGEVQYIRESERSFFHIVLEL 1116


>gi|388458304|gb|AFK31018.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1347 bits (3485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 825/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGA+
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAI 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458236|gb|AFK30984.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458286|gb|AFK31009.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458310|gb|AFK31021.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1347 bits (3485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 825/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458258|gb|AFK30995.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1347 bits (3485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINSK-------------DSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSILSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  ++ DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVHDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|39777271|gb|AAR30905.1| phytochrome B [Sorghum bicolor]
 gi|39777273|gb|AAR30906.1| phytochrome B [Sorghum bicolor]
          Length = 1178

 Score = 1347 bits (3485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1099 (59%), Positives = 828/1099 (75%), Gaps = 55/1099 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+YS+S+ +PP    E+QI AYLS+IQRGG IQPFGC
Sbjct: 71   VAQYTLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPFGC 130

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL------IGIDARTLFTPPSGASL 151
             LAV ++ +FR++ +SEN  ++LDL        L+        +G DAR LF+P S   L
Sbjct: 131  TLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSAAPPPVSLGADARLLFSPSSAVLL 190

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQ
Sbjct: 191  ERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQ 248

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            SQKLAV AISRLQALPGGDI LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR 
Sbjct: 249  SQKLAVRAISRLQALPGGDIKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRRD 308

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            +LEPYLG+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   + QPLCLV STLR+
Sbjct: 309  NLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGMSQPLCLVGSTLRA 368

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPF 379
            PHGCH QYM NMGSIASLVMAVII+S              +MKLWGLVVCHHTSPR IPF
Sbjct: 369  PHGCHAQYMANMGSIASLVMAVIISSGGDDEQTGRGGISSAMKLWGLVVCHHTSPRCIPF 428

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSIMD
Sbjct: 429  PLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMD 488

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAALYY G+ + +GVTPTESQ+KDI  WL   HGD TGLSTDSLA+AGY GAA L
Sbjct: 489  LVKCDGAALYYHGKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADAGYLGAAAL 548

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVV
Sbjct: 549  GDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVV 608

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELSSV 616
            K+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G++ELSSV
Sbjct: 609  KSRSLPWENAEMDAIHSLQLILRDSFRDAAEGTSNSKAIVNGQAQLGELELRGINELSSV 668

Query: 617  ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
              EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+++++ +ES+  V
Sbjct: 669  PREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEEIV 728

Query: 677  ENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736
            E L+ RAL GEEDKNVE+KL+ F  ++ +  ++++VNAC+SRDY  N+ GVCFVGQD+T 
Sbjct: 729  EKLLSRALRGEEDKNVEIKLKTFGSEQSNGAIFVIVNACSSRDYTQNIVGVCFVGQDVTG 788

Query: 737  EKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-- 794
            +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN  CSEWN AMEK+TGW R EV+G  
Sbjct: 789  QKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTSCSEWNTAMEKLTGWSRGEVVGKF 848

Query: 795  ----------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTD 826
                                        I GQ  E FPF FF++ G++V+  LTA+ R+ 
Sbjct: 849  LIGEVFGSFCRLKGPDALTKFMVVIHNAIGGQDYEKFPFSFFDKNGKYVQALLTANTRSK 908

Query: 827  AEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKL 886
             +GK IG FCF+QI   ++Q A E Q  ++   YA++KELAYI QE+KNPL+GIRF + L
Sbjct: 909  MDGKSIGAFCFLQIASAEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSL 968

Query: 887  LESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQ 946
            L+ + ++++QRQ+LET  ACE+Q+  I+    L+ IE+G++ L+  EF  G++++AVVSQ
Sbjct: 969  LQMTDLNDDQRQFLETCSACEKQMSKIVKDATLQSIEDGSLVLEKSEFSFGDVMNAVVSQ 1028

Query: 947  VMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLP 1006
             M+LLR+++L L+ DIP+EIK  S  GD+ R+Q VL+DFL  +VR APS +GWVEI+V P
Sbjct: 1029 AMLLLRERDLQLIRDIPDEIKDASAYGDQFRIQQVLADFLLSMVRSAPSENGWVEIQVRP 1088

Query: 1007 GLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNG 1066
             +K   D        FR   PGEG+P+ +++DM++  +QW+T EG+GL   RK+L +M G
Sbjct: 1089 NVKQNSDGTDTELFIFRFACPGEGLPADIVQDMFSN-SQWSTQEGVGLSTCRKILKLMGG 1147

Query: 1067 RVRYVRENSKCYFVIDLEL 1085
             V+Y+RE+ + +F+I LEL
Sbjct: 1148 EVQYIRESERSFFLIVLEL 1166


>gi|388458216|gb|AFK30974.1| phytochrome b, partial [Oryza sativa Indica Group]
 gi|388458218|gb|AFK30975.1| phytochrome b, partial [Oryza sativa Indica Group]
 gi|388458220|gb|AFK30976.1| phytochrome b, partial [Oryza sativa Indica Group]
 gi|388458260|gb|AFK30996.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458268|gb|AFK31000.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1346 bits (3484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  ++ DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVHDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458254|gb|AFK30993.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1346 bits (3484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 825/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRL ALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLHALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 KPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|39777293|gb|AAR30916.1| phytochrome B [Sorghum propinquum]
          Length = 1177

 Score = 1346 bits (3484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1099 (59%), Positives = 828/1099 (75%), Gaps = 55/1099 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+YS+S+ +PP    E+QI AYLS+IQRGG IQPFGC
Sbjct: 70   VAQYTLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPFGC 129

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL------IGIDARTLFTPPSGASL 151
             LAV ++ +FR++ +SEN  ++LDL        L+        +G DAR LF+P S   L
Sbjct: 130  TLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSAAPPHVSLGADARLLFSPSSAVLL 189

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             +A A+REISLLNP+ +HS  R    PFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQ
Sbjct: 190  ERAFAAREISLLNPLWIHS--RVSSNPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQ 247

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            SQKLAV AISRLQALPGGDI LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR 
Sbjct: 248  SQKLAVRAISRLQALPGGDIKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRRD 307

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            +LEPYLG+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   + QPLCLV STLR+
Sbjct: 308  NLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGMSQPLCLVGSTLRA 367

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPF 379
            PHGCH QYM NMGSIASLVMAVII+S              +MKLWGLVVCHHTSPR IPF
Sbjct: 368  PHGCHAQYMANMGSIASLVMAVIISSGGDDEQTGRGGISSAMKLWGLVVCHHTSPRCIPF 427

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSIMD
Sbjct: 428  PLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMD 487

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAALYY G+ + +GVTPTESQ+KDI  WL   HGD TGLSTDSLA+AGY GAA L
Sbjct: 488  LVKCDGAALYYHGKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADAGYLGAAAL 547

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVV
Sbjct: 548  GDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVV 607

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELSSV 616
            K+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G++ELSSV
Sbjct: 608  KSRSLPWENAEMDAIHSLQLILRDSFRDAAEGTSNSKAIVNGQVQLGELELRGINELSSV 667

Query: 617  ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
            A EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+++++ +ES+  V
Sbjct: 668  AREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEEIV 727

Query: 677  ENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736
            E L+ RAL GEEDKNVE+KL+ F  ++ +  ++++VNAC+SRDY  N+ GVCFVGQD+T 
Sbjct: 728  EKLLSRALRGEEDKNVEIKLKTFGSEQSNGAIFVIVNACSSRDYTQNIVGVCFVGQDVTG 787

Query: 737  EKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-- 794
            +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN  CSEWN AMEK+TGW R EV+G  
Sbjct: 788  QKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTSCSEWNTAMEKLTGWSRGEVVGKF 847

Query: 795  ----------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTD 826
                                        I GQ  E FPF FF++ G++V+  LTA+ R+ 
Sbjct: 848  LIGEVFGSFCRLKGPDALTKFMVVIHNAIGGQDYEKFPFSFFDKNGKYVQALLTANTRSK 907

Query: 827  AEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKL 886
             +GK IG FCF+QI   ++Q A E Q  ++   YA++KELAYI QE+KNPL+GIRF + L
Sbjct: 908  MDGKSIGAFCFLQIASAEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSL 967

Query: 887  LESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQ 946
            L+ + ++++QRQ+LET  ACE+Q+  I+    L+ IE+G++ L+  EF  G++++AVVSQ
Sbjct: 968  LQMTDLNDDQRQFLETCSACEKQMSKIVKDATLQSIEDGSLVLEKSEFSFGDVMNAVVSQ 1027

Query: 947  VMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLP 1006
             M+LLR+++L L+ DIP+EIK  S  GD+ R+Q VL+DFL  +VR APS +GWVEI+V P
Sbjct: 1028 AMLLLRERDLQLIRDIPDEIKDASAYGDQFRIQQVLADFLLSMVRSAPSENGWVEIQVRP 1087

Query: 1007 GLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNG 1066
             +K   D        FR   PGEG+P+ +++DM++  +QW+T EG+GL   RK+L +M G
Sbjct: 1088 NVKQNSDGTDTELFIFRFACPGEGLPADIVQDMFSN-SQWSTQEGVGLSTCRKILKLMGG 1146

Query: 1067 RVRYVRENSKCYFVIDLEL 1085
             V+Y+RE+ + +F+I LEL
Sbjct: 1147 EVQYIRESERSFFLIVLEL 1165


>gi|388458270|gb|AFK31001.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1346 bits (3484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 825/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  +MLDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADMLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +M+LWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMELWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL +ELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNIELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|297600820|ref|NP_001049910.2| Os03g0309200 [Oryza sativa Japonica Group]
 gi|255674454|dbj|BAF11824.2| Os03g0309200, partial [Oryza sativa Japonica Group]
          Length = 1120

 Score = 1346 bits (3484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/1109 (59%), Positives = 829/1109 (74%), Gaps = 58/1109 (5%)

Query: 32   VNKGKTIID-HYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRG 90
            V +GK      Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRG
Sbjct: 3    VRRGKNRTHPQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRG 62

Query: 91   GLIQPFGCMLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTL 142
            G IQPFGC LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR L
Sbjct: 63   GHIQPFGCTLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLL 122

Query: 143  FTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDP 202
            F P S   L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DP
Sbjct: 123  FAPSSAVLLERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDP 180

Query: 203  ALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHG 262
            ALS+AGAVQSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HG
Sbjct: 181  ALSIAGAVQSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHG 240

Query: 263  EVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPL 322
            EVV+E RR++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPL
Sbjct: 241  EVVAESRRNNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPL 300

Query: 323  CLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVC 369
            CLV STLRSPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVC
Sbjct: 301  CLVGSTLRSPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVC 360

Query: 370  HHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFS 429
            HHTSPR IPFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  
Sbjct: 361  HHTSPRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTG 420

Query: 430  IVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLA 489
            IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA
Sbjct: 421  IVTQSPSIMDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLA 480

Query: 490  EAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPR 549
            +AGYPGAA LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPR
Sbjct: 481  DAGYPGAAALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPR 540

Query: 550  SSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSK 606
            SSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +
Sbjct: 541  SSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELE 600

Query: 607  MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
            ++G+DELSSVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++
Sbjct: 601  LRGIDELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVND 660

Query: 667  VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
            ++ +ES+  V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ G
Sbjct: 661  LIFKESEETVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVG 720

Query: 727  VCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTG 786
            VCFVGQD+T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TG
Sbjct: 721  VCFVGQDVTGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTG 780

Query: 787  WMRHEVIG------------------------------ITGQGTENFPFGFFNRQGQFVE 816
            W R EV+G                              I GQ  E FPF FF++ G++V+
Sbjct: 781  WSRGEVVGKLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQ 840

Query: 817  VALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNP 876
              LTA+ R+  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNP
Sbjct: 841  ALLTANTRSRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNP 900

Query: 877  LNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLL 936
            LNGIRF + LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF L
Sbjct: 901  LNGIRFTNSLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSL 960

Query: 937  GNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSP 996
            G++++AVVSQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ 
Sbjct: 961  GSVMNAVVSQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAE 1020

Query: 997  DGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKL 1056
            +GWVEI+V P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL +
Sbjct: 1021 NGWVEIQVRPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSI 1079

Query: 1057 SRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             RK+L +M G V+Y+RE+ + +F I LEL
Sbjct: 1080 CRKILKLMGGEVQYIRESERSFFHIVLEL 1108


>gi|388458322|gb|AFK31027.1| phytochrome b, partial [Oryza officinalis]
          Length = 1171

 Score = 1346 bits (3484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 825/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QITAYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQITAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDGHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWEDAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T ++V+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQRVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458244|gb|AFK30988.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1346 bits (3484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 825/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRL ALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLHALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458212|gb|AFK30972.1| phytochrome b, partial [Oryza sativa Indica Group]
          Length = 1171

 Score = 1346 bits (3483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRTQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458312|gb|AFK31022.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1345 bits (3482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 826/1101 (75%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  +++DL        L+         +G DAR LF P S   
Sbjct: 122  PLAVADDSSFRLLAYSENTADLVDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSADL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458320|gb|AFK31026.1| phytochrome b, partial [Oryza nivara]
          Length = 1171

 Score = 1345 bits (3482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 825/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SP+GCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPYGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458282|gb|AFK31007.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1345 bits (3482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 826/1101 (75%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               ++KLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAIKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458272|gb|AFK31002.1| phytochrome b, partial [Oryza sativa Indica Group]
          Length = 1171

 Score = 1345 bits (3482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 823/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+RE SLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAARETSLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  ++ DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVHDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458366|gb|AFK31049.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1345 bits (3481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+V DLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVTDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHGDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF++NRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRRNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458336|gb|AFK31034.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1345 bits (3481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ L+CDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLICDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES  
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESGE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS A E+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTASEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458332|gb|AFK31032.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1345 bits (3481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIP IFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPLIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++ VV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNVVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458264|gb|AFK30998.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1345 bits (3481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
             PHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  LPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  ++ DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVHDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458348|gb|AFK31040.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1345 bits (3480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LL DMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLRDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +   G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMNGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458238|gb|AFK30985.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458308|gb|AFK31020.1| phytochrome b, partial [Oryza sativa Japonica Group]
 gi|388458376|gb|AFK31054.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1345 bits (3480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
                L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TENKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458290|gb|AFK31011.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1345 bits (3480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 825/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VI+LEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVINLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458374|gb|AFK31053.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1344 bits (3479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CC EWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCLEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458274|gb|AFK31003.1| phytochrome b, partial [Oryza sativa Indica Group]
          Length = 1171

 Score = 1344 bits (3479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1101 (59%), Positives = 823/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEF +QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD P  IVTQSPSI
Sbjct: 420  PFPLRYACEFFMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDTPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+K+I  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKNIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458302|gb|AFK31017.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1344 bits (3479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
                L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TENKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458340|gb|AFK31036.1| phytochrome b, partial [Oryza rufipogon]
 gi|388458342|gb|AFK31037.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1344 bits (3478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+ A DIPQA+RFLF+QN VRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYFATDIPQASRFLFRQNHVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458356|gb|AFK31044.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1344 bits (3478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1101 (59%), Positives = 823/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL ME  +A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMECSLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458334|gb|AFK31033.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1344 bits (3478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1101 (60%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y+RS+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTRSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHFVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYFGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I  EL
Sbjct: 1139 GGEVQYIRESERSFFHIVPEL 1159


>gi|388458344|gb|AFK31038.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1343 bits (3477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+ A DIPQA+RFLF+QN VRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYFATDIPQASRFLFRQNHVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458352|gb|AFK31042.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1343 bits (3477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1101 (59%), Positives = 823/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLL D+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLWDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L  + DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQFIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458256|gb|AFK30994.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1343 bits (3477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPPSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+R ISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAARGISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  ++ DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVHDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458354|gb|AFK31043.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1343 bits (3476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPIPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+ IDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVAIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDT+VE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTIVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKPFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458226|gb|AFK30979.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1343 bits (3476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHS Q+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSSQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPL+GIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRPHEKKCYARMKELAYIFQEIKNPLHGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458338|gb|AFK31035.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1343 bits (3476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1101 (59%), Positives = 823/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+ A DIPQA+RFLF+QN VRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYFATDIPQASRFLFRQNHVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++     +++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPTFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458314|gb|AFK31023.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1343 bits (3475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1101 (59%), Positives = 823/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTS R I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSARCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
                L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TENKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458266|gb|AFK30999.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1343 bits (3475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFYYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G +AR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGANARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
                L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TENRLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458298|gb|AFK31015.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1342 bits (3474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G +AR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGANARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CC EWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCLEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458228|gb|AFK30980.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1342 bits (3474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1101 (59%), Positives = 823/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RF F+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFPFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GW EI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWEEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458326|gb|AFK31029.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1342 bits (3473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1101 (59%), Positives = 823/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QP CLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPQCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFW RSHTAKE+KWGGAKHHPE KD+G +MH RSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWIRSHTAKEIKWGGAKHHPEDKDDGQRMHSRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKPFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458252|gb|AFK30992.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1342 bits (3473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRL ALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLHALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPH CH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHDCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458246|gb|AFK30989.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1342 bits (3473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1101 (59%), Positives = 823/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A F QS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFGQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHR+DVG+VIDLEP+++ DPALS+AGA 
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRVDVGVVIDLEPARTEDPALSIAGAA 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            ++LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  NNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINSK-------------DSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSILSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGYPGAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  ++ DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVHDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458214|gb|AFK30973.1| phytochrome b, partial [Oryza sativa Indica Group]
 gi|388458222|gb|AFK30977.1| phytochrome b, partial [Oryza sativa Indica Group]
          Length = 1171

 Score = 1342 bits (3472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1101 (59%), Positives = 823/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VI LEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIGLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ L CDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLPCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458360|gb|AFK31046.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1341 bits (3471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1101 (59%), Positives = 823/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSDASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+L WFRSHTAKE+KWGGAKHHPE KD+G +M PRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLSWFRSHTAKEIKWGGAKHHPEDKDDGQRMRPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458224|gb|AFK30978.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1341 bits (3471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1101 (59%), Positives = 823/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+V DLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVNDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QS KLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSLKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458358|gb|AFK31045.1| phytochrome b, partial [Oryza rufipogon]
          Length = 1171

 Score = 1339 bits (3466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1101 (59%), Positives = 824/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SP+GC+ QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPNGCYAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLST SLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTVSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|6469491|emb|CAA40795.2| phytochrome B [Oryza sativa Indica Group]
          Length = 1171

 Score = 1338 bits (3462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1101 (59%), Positives = 822/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R    PFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSNPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKL V AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLVVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHGQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRT  LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTGTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  DLGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC++RDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSTRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFPFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|388458208|gb|AFK30970.1| phytochrome b, partial [Oryza sativa Indica Group]
          Length = 1171

 Score = 1337 bits (3461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 658/1101 (59%), Positives = 821/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VI LEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIGLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ L CDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLPCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKL GLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSTPSAMKLRGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQALLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKFLKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|293336623|ref|NP_001168077.1| phytochromeB2 [Zea mays]
 gi|37926881|gb|AAP06789.1| phytochrome B2 apoprotein [Zea mays]
 gi|413955930|gb|AFW88579.1| phytochromeB2 [Zea mays]
          Length = 1166

 Score = 1337 bits (3461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/1099 (59%), Positives = 825/1099 (75%), Gaps = 55/1099 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  YN DA L A FEQS ASG+SF+YS+S+ +PP    E+QI AYLS+IQRGG IQP GC
Sbjct: 56   VAQYNLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPLGC 115

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL------IGIDARTLFTPPSGASL 151
             LAV ++ +FR++ +SEN  ++LDL        L+ +      +G DAR  F+P S   L
Sbjct: 116  TLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSVALPPVSLGADARLYFSPSSAVLL 175

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             +A A+REISLLNP+ +HS  R+  KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQ
Sbjct: 176  ERAFAAREISLLNPLWIHS--RASSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQ 233

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            SQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR 
Sbjct: 234  SQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYKFHEDEHGEVVAESRRD 293

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            +LEPYLG+H+PA DIPQA+RFLF+QNRVRMI DCHAIPV VIQ   L Q LCLV STLR+
Sbjct: 294  NLEPYLGLHYPATDIPQASRFLFQQNRVRMIADCHAIPVRVIQDPGLSQQLCLVGSTLRA 353

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPF 379
            PHGCH QYM NMGSIASLVMAVII+S              SMKLWGLVVCHHTSPR IPF
Sbjct: 354  PHGCHAQYMANMGSIASLVMAVIISSGGDDERTGRGAISSSMKLWGLVVCHHTSPRCIPF 413

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  I+TQSPS+MD
Sbjct: 414  PLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPAGIITQSPSVMD 473

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAALYY G+ + +GVTPTESQ+KDI  WL   HGD TGLSTDSLA+AGY GA  L
Sbjct: 474  LVKCDGAALYYRGKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADAGYLGAVAL 533

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVV
Sbjct: 534  GDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVV 593

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELSSV 616
            K+RS  WE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G++ELSSV
Sbjct: 594  KSRSLSWENAEMDAIHSLQLILRDSFRDAAEGTSNSKAIVNGQRQLGELELRGINELSSV 653

Query: 617  ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
            A EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+++++ +E    V
Sbjct: 654  AREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKECDDIV 713

Query: 677  ENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736
            E L+ RAL GEEDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+T 
Sbjct: 714  EKLLSRALRGEEDKNVEIKLKTFGSEQSKGAIFVIVNACSSRDYTQNIVGVCFVGQDVTG 773

Query: 737  EKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-- 794
            +KV+MDKFI +QGDY+AI+ + NPL+PPIFASDEN  CSEWN AMEK+TGW R EV+G  
Sbjct: 774  QKVVMDKFINIQGDYKAIVHNPNPLLPPIFASDENTSCSEWNTAMEKLTGWSREEVVGKF 833

Query: 795  ----------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTD 826
                                        I G  +E FPF FF++ G++V+  LTA+ R+ 
Sbjct: 834  LIGEVFGNCCRLKGPDALTKFMVVIHNAIEGHDSEKFPFSFFDKNGKYVQALLTANTRSK 893

Query: 827  AEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKL 886
             +GK IG FCF+QI   ++Q A E Q  ++   YA++KELAYI QE+KNPL+GIRF + L
Sbjct: 894  MDGKSIGAFCFLQIASAEIQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFTNSL 953

Query: 887  LESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQ 946
            L+ + ++++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++AVVSQ
Sbjct: 954  LQMTDLNDDQRQFLETSSACEKQMSKIVKDASLKSIEDGSLVLEKSEFSLGDVMNAVVSQ 1013

Query: 947  VMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLP 1006
             M LLR+++L L+ DIP+EIK  S  GD+ R+Q VL+DFL  + + APS +GWVEI+V P
Sbjct: 1014 TMSLLRERDLQLIRDIPDEIKDASAYGDQFRIQQVLADFLLSMAQSAPSENGWVEIQVRP 1073

Query: 1007 GLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNG 1066
             +K   D        FR   PGEG+P+ +++DM++  +QW+T EG+GL   RK+L +M G
Sbjct: 1074 NVKQNYDGTDTELFIFRFACPGEGLPADIVQDMFSN-SQWSTQEGVGLSTCRKILKLMGG 1132

Query: 1067 RVRYVRENSKCYFVIDLEL 1085
             V+Y+RE+ + +F+I LEL
Sbjct: 1133 EVQYIRESERSFFLIVLEL 1151


>gi|388458240|gb|AFK30986.1| phytochrome b, partial [Oryza sativa Japonica Group]
          Length = 1171

 Score = 1337 bits (3460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1101 (59%), Positives = 821/1101 (74%), Gaps = 57/1101 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS ASG+SF+Y++S+ + P    E+QI AYLS+IQRGG IQPFGC
Sbjct: 62   VAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFGC 121

Query: 99   MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
             LAV ++ +FR++ YSEN  ++LDL        L+         +G DAR LF P S   
Sbjct: 122  TLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAVL 181

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 182  LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 239

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QSQKLAV AISRLQALPGGD+ LLCDTVV  V++L GYDRVM+Y FH+D+HGEVV+E RR
Sbjct: 240  QSQKLAVRAISRLQALPGGDVKLLCDTVVGHVRELIGYDRVMVYRFHEDEHGEVVAESRR 299

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            S+LEPY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR
Sbjct: 300  SNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLR 359

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
            SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 360  SPHGCHAQYMANMGSIASLVMAVIISSGGDDDHNIARGSIPSAMKLWGLVVCHHTSPRCI 419

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
            PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 420  PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 479

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY G+ + +GVTPTE Q+KDI  WL   HGD TGLSTDSLA+AGY GAA
Sbjct: 480  MDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYSGAA 539

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG AV GMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 540  ALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 599

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELS 614
            VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 600  VVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELS 659

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SVA EMVRLIETAT PIF V + G INGWNAKVAELTGL   EAMGKSL+++++ +ES+ 
Sbjct: 660  SVAREMVRLIETATVPIFAVGTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEE 719

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  L+ RAL G+EDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+
Sbjct: 720  TVNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDV 779

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +KV+MDKFI +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AMEK+TGW R EV+G
Sbjct: 780  TGQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVG 839

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          I GQ  E FPF FF++ G++V+  LTA+ R
Sbjct: 840  KLLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTR 899

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            +  +G+ IG FCF+QI  P+LQ A E Q   +   YA++KELAYI QE+KNPLNGIRF +
Sbjct: 900  SRMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTN 959

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  EF LG++++ VV
Sbjct: 960  SLLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNVVV 1019

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQVM+ LR+++L L+ DIP+EIK  S  GD+ R+Q VL DFL  +VR AP+ +GWVEI+V
Sbjct: 1020 SQVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQV 1079

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
             P +K   D    +   FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M
Sbjct: 1080 RPNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLM 1138

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
             G V+Y+RE+ + +F I LEL
Sbjct: 1139 GGEVQYIRESERSFFHIVLEL 1159


>gi|302818893|ref|XP_002991119.1| hypothetical protein SELMODRAFT_161430 [Selaginella moellendorffii]
 gi|300141213|gb|EFJ07927.1| hypothetical protein SELMODRAFT_161430 [Selaginella moellendorffii]
          Length = 1143

 Score = 1336 bits (3458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1110 (58%), Positives = 821/1110 (73%), Gaps = 68/1110 (6%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            +    ADA L A +E+S  SG SF+Y++SV    S  E +P + +TAYL ++QRGGL+QP
Sbjct: 22   VAQTTADAKLHAVYEESGESGDSFDYTKSVNATKSTGESIPAQAVTAYLQRMQRGGLVQP 81

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRS------EDFELNGLIGIDARTLFTPPSGA 149
            FGCMLAVEE +FR+I +S+N  EMLDL  +S         +L G IG DAR+LFTP S +
Sbjct: 82   FGCMLAVEEGSFRVIAFSDNAGEMLDLMPQSVPSLGAGQQDLLG-IGSDARSLFTPASAS 140

Query: 150  SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPAL-SLAG 208
            +L KAA + ++S+LNPI VH  + +  KPFYAI+HRIDVG+V+DLEP K+ D ++ S AG
Sbjct: 141  ALEKAAGAIDVSMLNPISVHCKTSA--KPFYAIVHRIDVGLVLDLEPVKASDTSVGSAAG 198

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AISRLQ+LPGGDIGLLCDTVVE+V++LTGYDRVM Y FHDD+HGEVV+EI
Sbjct: 199  ALQSHKLAAKAISRLQSLPGGDIGLLCDTVVEEVRELTGYDRVMAYKFHDDEHGEVVAEI 258

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
            RRSDLEPYLG+H+PA DIPQA+RFLF +NRVRMICDC A PV + Q K+L+QP+ L  ST
Sbjct: 259  RRSDLEPYLGLHYPATDIPQASRFLFMKNRVRMICDCSAAPVKISQDKDLRQPISLAGST 318

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDS--------------------MKLWGLVV 368
            LR+PHGCH QYM NMGS+ASLVMAVIIN  D                      KLWG+VV
Sbjct: 319  LRAPHGCHAQYMGNMGSVASLVMAVIINDNDDEYRSSSGGGGGGGGAYQQKGRKLWGMVV 378

Query: 369  CHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPF 428
            CHHTSPR +PFPLR ACEFL+Q F LQL ME+++A QL EK+ILRTQ LLCDMLLRDAP 
Sbjct: 379  CHHTSPRSVPFPLRSACEFLMQVFGLQLNMEVELAAQLREKHILRTQTLLCDMLLRDAPI 438

Query: 429  SIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSL 488
             IV+QSP+IMDLVKCDGAALYYG R WL+GVTP+E+Q+KDIA WLL +H D TGLSTDSL
Sbjct: 439  GIVSQSPNIMDLVKCDGAALYYGKRFWLLGVTPSEAQIKDIADWLLEHHKDSTGLSTDSL 498

Query: 489  AEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHP 548
            A+AGYPGAA LG  VCGMA A+IT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G KMHP
Sbjct: 499  ADAGYPGAASLGDEVCGMAAAKITAKDFLFWFRSHTAKEIKWGGAKHDPDDKDDGRKMHP 558

Query: 549  RSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQ 608
            RSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SF ++++ +D+K   + + N  K+Q
Sbjct: 559  RSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSFHDIDD-SDTKTMIHARLNDLKLQ 617

Query: 609  GVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVV 668
            G+DELS+VA EMVRLIETATAPI  VDSSG INGWNAKVAELTGLP +EAMG+SL  ++V
Sbjct: 618  GMDELSTVANEMVRLIETATAPILAVDSSGFINGWNAKVAELTGLPVTEAMGRSLAKDLV 677

Query: 669  HEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVC 728
             +ES   VE L+  AL G+E++NVELKL+ F +QK    V ++VNAC SRD  +NV GVC
Sbjct: 678  LQESADMVERLLYLALQGDEEQNVELKLKTFGVQKDKEAVILVVNACASRDVSDNVVGVC 737

Query: 729  FVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWM 788
            FVGQD+T +KV+MDKF R+QGDY+AI+Q+ NPLIPPIF +DE   CSEWN AMEK++GW 
Sbjct: 738  FVGQDVTGQKVVMDKFTRIQGDYKAIVQNPNPLIPPIFGADEFGYCSEWNPAMEKLSGWK 797

Query: 789  RHEVIG---------------------------------ITGQGTENFPFGFFNRQGQFV 815
            R EV+G                                   GQ TE FPF FF+RQG++V
Sbjct: 798  REEVLGKMLVGEIFGIQMMYCRLKGQDAVTKFMIVLNSAADGQDTEKFPFAFFDRQGKYV 857

Query: 816  EVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKN 875
            E  LTA++R DAEG + G FCF+ I   +LQ AL  Q   +    +K+KELAYIRQE+KN
Sbjct: 858  EALLTATKRADAEGSITGVFCFLHIASAELQQALTVQRATEKVALSKLKELAYIRQEIKN 917

Query: 876  PLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFL 935
            PL GI F   L+E++ +SE+Q+QY+ET   CE+QI  I+D MDL  IE+G +EL + EF+
Sbjct: 918  PLYGIMFTRTLMETTDLSEDQKQYVETGAVCEKQIRKILDDMDLESIEDGYLELDTTEFM 977

Query: 936  LGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS 995
            +G ++DAV+SQ M+  ++KNL L+ + P+EIKA+ L GD++RLQ VL+DFL   +R  PS
Sbjct: 978  MGTVMDAVISQGMITSKEKNLQLIRETPKEIKAMFLYGDQVRLQQVLADFLLNAIRFTPS 1037

Query: 996  PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLK 1055
             + WV IKV    K +      +H++FR+THPG G+P  L+++M++ R +  T EGLGL 
Sbjct: 1038 SENWVGIKVATSRKRLGGGVHVMHLEFRITHPGVGLPEELVQEMFD-RGRGMTQEGLGLS 1096

Query: 1056 LSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + RKL+ +MNG V Y+RE  K +F++ LEL
Sbjct: 1097 MCRKLVKLMNGEVEYLREPGKNFFLVSLEL 1126


>gi|302819945|ref|XP_002991641.1| hypothetical protein SELMODRAFT_161807 [Selaginella moellendorffii]
 gi|300140490|gb|EFJ07212.1| hypothetical protein SELMODRAFT_161807 [Selaginella moellendorffii]
          Length = 1142

 Score = 1335 bits (3455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/1109 (58%), Positives = 821/1109 (74%), Gaps = 67/1109 (6%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            +    ADA L A +E+S  SG SF+Y++SV    S  E +P + +TAYL ++QRGGL+QP
Sbjct: 22   VAQTTADAKLHAVYEESGESGDSFDYTKSVNATKSTGESIPAQAVTAYLQRMQRGGLVQP 81

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRS------EDFELNGLIGIDARTLFTPPSGA 149
            FGCMLAVEE +FR+I +S+N  EMLDL  +S         +L G IG DAR+LFTP S +
Sbjct: 82   FGCMLAVEEGSFRVIAFSDNAGEMLDLMPQSVPSLGAGQQDLLG-IGSDARSLFTPASAS 140

Query: 150  SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPAL-SLAG 208
            +L KAA + ++S+LNPI VH  + +  KPFYAI+HRIDVG+V+DLEP K+ D ++ S AG
Sbjct: 141  ALEKAAGAIDVSMLNPISVHCKTSA--KPFYAIVHRIDVGLVLDLEPVKASDTSVGSAAG 198

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AISRLQ+LPGGDIGLLCDTVVE+V++LTGYDRVM Y FHDD+HGEVV+EI
Sbjct: 199  ALQSHKLAAKAISRLQSLPGGDIGLLCDTVVEEVRELTGYDRVMAYKFHDDEHGEVVAEI 258

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
            RRSDLEPYLG+H+PA DIPQA+RFLF +NRVRMICDC A PV + Q K+L+QP+ L  ST
Sbjct: 259  RRSDLEPYLGLHYPATDIPQASRFLFMKNRVRMICDCSAAPVKISQDKDLRQPISLAGST 318

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------------MKLWGLVVC 369
            LR+PHGCH QYM NMGS+ASLVMAVIIN  D                     KLWG+VVC
Sbjct: 319  LRAPHGCHAQYMGNMGSVASLVMAVIINDNDDEYRSSSGGGGGGGAYQQKGRKLWGMVVC 378

Query: 370  HHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFS 429
            HHTSPR +PFPLR ACEFL+Q F LQL ME+++A QL EK+ILRTQ LLCDMLLRDAP  
Sbjct: 379  HHTSPRSVPFPLRSACEFLMQVFGLQLNMEVELAAQLREKHILRTQTLLCDMLLRDAPIG 438

Query: 430  IVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLA 489
            IV+QSP+IMDLVKC+GAALYYG R WL+GVTP+E+Q+KDIA WLL +H D TGLSTDSLA
Sbjct: 439  IVSQSPNIMDLVKCNGAALYYGKRFWLLGVTPSEAQIKDIADWLLEHHKDSTGLSTDSLA 498

Query: 490  EAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPR 549
            +AGYPGAA LG  VCGMA A+IT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G KMHPR
Sbjct: 499  DAGYPGAASLGDEVCGMAAAKITAKDFLFWFRSHTAKEIKWGGAKHDPDDKDDGRKMHPR 558

Query: 550  SSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQG 609
            SSFKAFLEVVK RS PWE  E++AIHSLQ+++R SF ++++ +D+K   + + N  K+QG
Sbjct: 559  SSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSFHDIDD-SDTKTMIHARLNDLKLQG 617

Query: 610  VDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVH 669
            +DELS+VA EMVRLIETATAPI  VDSSG INGWNAKVAELTGLP +EAMG+SL  ++V 
Sbjct: 618  MDELSTVANEMVRLIETATAPILAVDSSGFINGWNAKVAELTGLPVTEAMGRSLAKDLVL 677

Query: 670  EESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCF 729
            +ES   VE L+  AL G+E++NVELKL+ F +QK    V ++VNAC SRD  +NV GVCF
Sbjct: 678  QESADMVERLLYLALQGDEEQNVELKLKTFGVQKDKEAVILVVNACASRDVSDNVVGVCF 737

Query: 730  VGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMR 789
            VGQD+T +KV+MDKF R+QGDY+AI+Q+ NPLIPPIF +DE   CSEWN AMEK++GW R
Sbjct: 738  VGQDVTGQKVVMDKFTRIQGDYKAIVQNPNPLIPPIFGADEFGYCSEWNPAMEKLSGWKR 797

Query: 790  HEVIG---------------------------------ITGQGTENFPFGFFNRQGQFVE 816
             EV+G                                   GQ TE FPF FF+RQG++VE
Sbjct: 798  EEVLGKMLVGEIFGIQMMYCRLKGQDAVTKFMIVLNSAADGQDTEKFPFAFFDRQGKYVE 857

Query: 817  VALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNP 876
              LTA++R DAEG + G FCF+ I   +LQ AL  Q   +    +K+KELAYIRQE+KNP
Sbjct: 858  ALLTATKRADAEGSITGVFCFLHIASAELQQALTVQRATEKVALSKLKELAYIRQEIKNP 917

Query: 877  LNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLL 936
            L GI F   L+E++ +SE+Q+QY+ET   CE+QI  I+D MDL  IE+G +EL + EF++
Sbjct: 918  LYGIMFTRTLMETTDLSEDQKQYVETGAVCEKQIRKILDDMDLESIEDGYLELDTTEFMM 977

Query: 937  GNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSP 996
            G ++DAV+SQ M+  ++KNL L+ + P+EIKA+ L GD++RLQ VL+DFL   +R  PS 
Sbjct: 978  GTVMDAVISQGMITSKEKNLQLIRETPKEIKAMFLYGDQVRLQQVLADFLLNAIRFTPSS 1037

Query: 997  DGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKL 1056
            + WV IKV    K +      +H++FR+THPG G+P  L+++M++ R +  T EGLGL +
Sbjct: 1038 ENWVGIKVATSRKRLGGGVHVMHLEFRITHPGVGLPEELVQEMFD-RGRGMTQEGLGLSM 1096

Query: 1057 SRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             RKL+ +MNG V Y+RE  K +F++ LEL
Sbjct: 1097 CRKLVKLMNGEVEYLREPGKNFFLVSLEL 1125


>gi|13429830|dbj|BAB39687.1| phytochrome [Marchantia paleacea subsp. diptera]
          Length = 1126

 Score = 1331 bits (3444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1103 (59%), Positives = 809/1103 (73%), Gaps = 56/1103 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            I    ADA L A FE+S  SG SF+Y++S+    S  E VP + +TAYL ++QRGGL Q 
Sbjct: 22   IVQTTADAKLQAVFEESGESGDSFDYTKSINASKSTGESVPAQAVTAYLQRMQRGGLTQT 81

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASL 151
            FGCMLAVEE TFR++ YSEN  EMLDL  ++       ++ G IG DARTLF   S  +L
Sbjct: 82   FGCMLAVEELTFRVLAYSENAPEMLDLMPQAVPCVGQQDVLG-IGTDARTLFNSASAVAL 140

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             KAA + ++S+ NPI V   S    KPFYAI+HRID G+VID+EP +  DP++S AGA+Q
Sbjct: 141  EKAAGALDVSMFNPISVQCKSSG--KPFYAIVHRIDAGLVIDIEPVRPSDPSVSAAGALQ 198

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            S KLA  AISRLQ+LPGGDIGLLCDTVVE+V++LTGYDRVM Y FH+D+HGEVV+EIRRS
Sbjct: 199  SHKLAAKAISRLQSLPGGDIGLLCDTVVEEVRELTGYDRVMAYKFHEDEHGEVVAEIRRS 258

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            DLEPYLG+H+PA DIPQA+RFLF +NRVRMICDC A PV VIQ KEL+QPL L  STLR+
Sbjct: 259  DLEPYLGLHYPATDIPQASRFLFMKNRVRMICDCCAQPVQVIQDKELRQPLSLAGSTLRA 318

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINSKD-----------SMKLWGLVVCHHTSPRYIPFP 380
            PHGCH QYM NMGSIASLVMAVIIN  D             KLWGLVVCHHT+PR +PFP
Sbjct: 319  PHGCHAQYMGNMGSIASLVMAVIINVNDEEYSSRGYHHKGRKLWGLVVCHHTTPRSVPFP 378

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LR ACEFL+Q F LQL ME+++A QL EK ILRTQ LLCDMLLRDAP  IV+QSP+IMDL
Sbjct: 379  LRSACEFLMQVFGLQLNMEVELAAQLREKRILRTQTLLCDMLLRDAPIGIVSQSPNIMDL 438

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKCDGAALYYG R W++G TPTE Q+KDIA WLL  H D TGLSTDSLA+AGYPGAA LG
Sbjct: 439  VKCDGAALYYGKRYWVLGTTPTELQIKDIADWLLEYHKDSTGLSTDSLADAGYPGAASLG 498

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
             AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKH P+ KD+G KMHPRSSFKAFLEVVK
Sbjct: 499  DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHDPDDKDDGRKMHPRSSFKAFLEVVK 558

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
             RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+QG+DELS+VA EM
Sbjct: 559  RRSLPWEDVEMDAIHSLQLILRGSFQDI-DDSDTKTMIHARLNDLKLQGMDELSTVANEM 617

Query: 621  VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
            VRLIETATAPI  VDSSG INGWNAKVAELTGLP SEAMG+SL+ ++  EES   VE L+
Sbjct: 618  VRLIETATAPILAVDSSGFINGWNAKVAELTGLPVSEAMGRSLVKDLALEESVETVERLL 677

Query: 681  CRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVL 740
              AL GEE++NVE+KL+ +  QK    V ++VNAC+SRD   NV GVCFVGQD+T +KV+
Sbjct: 678  YLALQGEEEQNVEIKLQTYGAQKDKGAVILIVNACSSRDVTENVVGVCFVGQDVTGQKVV 737

Query: 741  MDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------ 794
            MDKF R+QGDY+AI+Q+ NPLIPPIF SDE   CSEWN AMEK+ GW R EVIG      
Sbjct: 738  MDKFTRIQGDYKAIVQNPNPLIPPIFGSDEFGYCSEWNPAMEKLAGWKREEVIGKMLVGE 797

Query: 795  ---------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       + GQ +E FPF FF+RQG+FVE  LTA++RTD+
Sbjct: 798  IFGTQMMCCRLKGQDAMTKFMIVLNSAMDGQDSEKFPFAFFDRQGKFVEALLTANKRTDS 857

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            EG   G FCF+QI   +L  AL  Q   +   ++K+KELAYIRQE+KNPL GI F   L+
Sbjct: 858  EGAFTGVFCFLQIASMELLQALTVQRATEKVAFSKLKELAYIRQEIKNPLYGIMFTRNLV 917

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E ++++E Q+Q++ETS  CERQ+  I+D MDL  IE+G +EL + EF++G ++DAV+SQ 
Sbjct: 918  EDTNLTEEQKQFIETSALCERQLRRILDDMDLESIEDGYLELDTAEFIMGTVMDAVISQG 977

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M+  R+K L L+ D P + K L L GD++RLQ VL+DFL   +R  PS +GWV IK +  
Sbjct: 978  MITSREKGLQLIWDTPRDTKNLCLFGDQVRLQQVLADFLLNAIRFTPSSEGWVGIKGVSS 1037

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
                      VH +FR+THPG G+P  L+++M++ R +  T EGLGL + RKLL +M+G 
Sbjct: 1038 RHRQGGGVHVVHFEFRVTHPGAGLPEELVQEMFD-RGRGMTQEGLGLNMCRKLLKLMSGD 1096

Query: 1068 VRYVRENSKCYFVIDLELKTRGR 1090
            V+Y+RE  KCYF++++EL    R
Sbjct: 1097 VQYIREAGKCYFLVNVELPIAQR 1119


>gi|5757903|gb|AAD50631.1|AF122901_1 phytochrome B2 [Solanum lycopersicum]
          Length = 1121

 Score = 1330 bits (3443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/1088 (59%), Positives = 820/1088 (75%), Gaps = 48/1088 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            +  Y  DA L A FEQS  SGK+F+YS+SV +  E V E QITAYL+K+QRGG IQPFGC
Sbjct: 36   VAQYTTDARLHAAFEQSGESGKNFDYSQSVRNSTESVTEHQITAYLNKMQRGGHIQPFGC 95

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL--IGIDARTLFTPPSGASLAKAA 155
             +AVEE +F +I YSEN  EMLD+  +S    E N +  IG D RTLF+  S   L  A 
Sbjct: 96   TIAVEEASFCVIAYSENACEMLDIMPQSVPSLEKNEILKIGTDVRTLFSSSSSGLLEGAF 155

Query: 156  ASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKL 215
             +REI+LLNPI VHS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKL
Sbjct: 156  GAREITLLNPIWVHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKL 213

Query: 216  AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP 275
            AV AIS LQ+LPGGDI LLCDTVV+ V++LTGYDRVM+Y FHDD+HGEVV+E RRSDLEP
Sbjct: 214  AVRAISLLQSLPGGDIDLLCDTVVKSVRELTGYDRVMVYKFHDDEHGEVVAESRRSDLEP 273

Query: 276  YLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGC 335
            Y+G+H+PA DIPQA+RFLFKQNRVRMI DC AIPV VIQ + L QPLCLV STLR+PHGC
Sbjct: 274  YIGLHYPATDIPQASRFLFKQNRVRMIVDCTAIPVRVIQDESLMQPLCLVGSTLRAPHGC 333

Query: 336  HLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEF 387
            H QYM NMG++ASL +AV+IN  D        +M+LWGLVV HH+S R+IPFPLRYACEF
Sbjct: 334  HPQYMVNMGNVASLTLAVVINGNDDEVVGGRNAMRLWGLVVGHHSSARFIPFPLRYACEF 393

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L+QAF LQL MELQ+A QLAEK +LRTQ +LCDMLLRD+P  IVTQ+PSI+DLVKCDGAA
Sbjct: 394  LMQAFGLQLNMELQLASQLAEKRVLRTQTVLCDMLLRDSPTGIVTQNPSIVDLVKCDGAA 453

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY GR + +G+TPT +Q+K I  WLL  H D TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 454  LYYQGRYYPLGITPTAAQIKGIVEWLLTCHVDSTGLSTDSLADAGYPEAASLGAAVCGMA 513

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
             A +TSK FLFWFRSHTA E+KWGGAKHHPE KD+  KMHPRSSFKAFLEVVKNRS PWE
Sbjct: 514  VAYVTSKYFLFWFRSHTASEIKWGGAKHHPEDKDDWQKMHPRSSFKAFLEVVKNRSLPWE 573

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             +E++AIHSLQ+++RDSF++    ++SK     Q     +QG+DEL SVA EMVRL+ETA
Sbjct: 574  NAEMDAIHSLQLILRDSFKDA---SNSKSIVRVQLREEGLQGMDELRSVAREMVRLVETA 630

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
            TAPIF VD  G IN WNAKVAELT L   EA+GKSL+ ++VHEESQ   +NL+ +AL GE
Sbjct: 631  TAPIFAVDVEGRINAWNAKVAELTELSVEEAIGKSLVHDLVHEESQTTAQNLLRKALRGE 690

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            EDKN+E+KLR F  ++    V++ VNAC+++DY NN+ GV F+GQDIT +KV++DKF+R+
Sbjct: 691  EDKNIEIKLRTFGAEQLKKTVFVEVNACSNKDYTNNIVGVSFIGQDITAQKVVLDKFVRI 750

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY+AI+ S NPLIPPIF SDEN CC EWN AMEK++GW + E+IG             
Sbjct: 751  QGDYKAIMHSPNPLIPPIFVSDENTCCFEWNTAMEKLSGWNKEEIIGKMLVGEIFGTFCR 810

Query: 795  -----------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCF 837
                             I GQ  + FPF F +R G+FV+  LTA++R + +G++IG FCF
Sbjct: 811  LKGPDDMTNFMIMLHKAIGGQEIDKFPFSFSDRNGKFVQALLTANKRVNVDGQIIGAFCF 870

Query: 838  MQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQR 897
            +QI  P+LQ  L  Q  ++      +KELAYI +E+KNPLNGIRF + LLE++ ++ENQ+
Sbjct: 871  LQIASPELQKTL-MQRQQEKTSNIHMKELAYICRELKNPLNGIRFTNSLLEATELTENQK 929

Query: 898  QYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLH 957
            Q+LETS ACERQ+  II  +DL  IE+G++EL+  EF L +++DAVVSQVM+LLR++ + 
Sbjct: 930  QFLETSAACERQMSKIIRDIDLDNIEDGSLELEKGEFFLASVIDAVVSQVMLLLRERGVQ 989

Query: 958  LLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQF 1017
            L+ DIP+EIK L + GD++R+Q V +DFL  +  +AP  +GWVE+ + P +K I D    
Sbjct: 990  LIRDIPDEIKTLRVYGDQVRIQQVFADFLQIMASYAPPREGWVEVHLRPSIKQISDGVTI 1049

Query: 1018 VHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKC 1077
            VH++FR+  PGEG+P  LI+DM++  + W T +GLGL + R++L +MNG+V+Y+RE+ +C
Sbjct: 1050 VHIEFRIVCPGEGLPPELIQDMFHN-SLWVTQQGLGLSMCRRILQLMNGQVQYIRESERC 1108

Query: 1078 YFVIDLEL 1085
            +F+I L+L
Sbjct: 1109 FFLIILQL 1116


>gi|78643878|emb|CAJ21302.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1330 bits (3441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/1065 (61%), Positives = 801/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCKLKGPNSLTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643898|emb|CAJ21312.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1329 bits (3440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/1065 (61%), Positives = 801/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNIKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643894|emb|CAJ21310.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1329 bits (3440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/1065 (61%), Positives = 801/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643884|emb|CAJ21305.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1328 bits (3437), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/1065 (61%), Positives = 801/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGNCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643906|emb|CAJ21316.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1328 bits (3436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/1065 (61%), Positives = 801/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNIKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643918|emb|CAJ21322.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1327 bits (3435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/1065 (61%), Positives = 799/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643912|emb|CAJ21319.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1327 bits (3434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/1065 (61%), Positives = 801/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGCINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNIKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643916|emb|CAJ21321.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1327 bits (3434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/1065 (61%), Positives = 801/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643900|emb|CAJ21313.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1327 bits (3434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/1065 (61%), Positives = 799/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643856|emb|CAJ21291.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1327 bits (3433), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/1065 (61%), Positives = 801/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRLIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643876|emb|CAJ21301.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1326 bits (3431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1065 (61%), Positives = 799/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW + EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSKGEVVGKMLVGEVFGNCCKLKGPNALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKPEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643890|emb|CAJ21308.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1325 bits (3430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/1035 (62%), Positives = 791/1035 (76%), Gaps = 46/1035 (4%)

Query: 31   PVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRG 90
            P       I  Y  DA L A FEQS  +GKSF+YS+SV +P + VPEEQITAYLSKIQRG
Sbjct: 31   PTESVSKAIAQYTVDAQLHAVFEQSGGTGKSFDYSKSVRTPNQSVPEEQITAYLSKIQRG 90

Query: 91   GLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPP 146
            G IQPFGCM+A +E +FR+I YSEN  +ML L  +S    E  E+   +G D R LF P 
Sbjct: 91   GHIQPFGCMIAADEQSFRVIAYSENAKDMLGLTPQSVPSLEKQEIL-FVGADVRILFRPS 149

Query: 147  SGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSL 206
            S   L KA  +REI+LLNPI +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+
Sbjct: 150  SAVLLEKAFGAREITLLNPIWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSI 207

Query: 207  AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
            AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVV+ V++LTGYDRVM+Y FH+D+HGEVV+
Sbjct: 208  AGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVDSVRELTGYDRVMVYKFHEDEHGEVVA 267

Query: 267  EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
            E +R DLEPY+G+H+P+ DIPQA+RFLFKQNRVRMI DCHAIPV VIQ + L QPLCLV 
Sbjct: 268  ENKRVDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHAIPVSVIQDEGLMQPLCLVG 327

Query: 327  STLRSPHGCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIP 378
            STLR+PHGCH QYM NMGSIASL MAVII   D        SM+LWGLVVCHHTS R IP
Sbjct: 328  STLRAPHGCHAQYMENMGSIASLAMAVIIYGNDEEAIGGRNSMRLWGLVVCHHTSARCIP 387

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+QAF LQL MELQ+A QL EK++LRTQ LLCDMLLRD+P  IVTQSPSIM
Sbjct: 388  FPLRYACEFLMQAFGLQLNMELQLASQLLEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIM 447

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALYY G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA 
Sbjct: 448  DLVKCDGAALYYQGQYYPLGVTPTEAQIKDIVEWLLTLHGDPTGLSTDSLADAGYPGAAF 507

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
            LG AVCGMA A I  +DFLFWFRSHTAKEVKWGGAKHHPE KD+G +MHPRSSFKAFLEV
Sbjct: 508  LGDAVCGMAVAYIAERDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSSFKAFLEV 567

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
            VK+RS PWE +E++AIHSLQ+++RDSF++ E  N   V  N Q    ++QG+DELSSVA 
Sbjct: 568  VKSRSLPWENAEMDAIHSLQLILRDSFRDAEATNSKAVVHN-QLKDMELQGMDELSSVAR 626

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETATAPIF VD  G INGWNAKVAELTGL   EAMGKSL+ ++V++E +  V+ 
Sbjct: 627  EMVRLIETATAPIFAVDVDGRINGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDK 686

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            LI RA+ GEEDKNVE+KLR F  + Q   V+++VNAC+S+DY +N+ GVCFVGQD+T +K
Sbjct: 687  LIHRAVKGEEDKNVEIKLRTFCSEHQKKAVFVVVNACSSKDYMDNIVGVCFVGQDVTGQK 746

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794
            V+MDK++ +QGDY+AI+ S NP IPPIFASDEN CC EWN A+EK+TGW R EV+G    
Sbjct: 747  VVMDKYVLIQGDYKAIVHSPNPSIPPIFASDENTCCLEWNTALEKLTGWSRGEVVGKMLV 806

Query: 795  --------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAE 828
                                      I G  T+  PF FF+R  + V+  LTA++R + +
Sbjct: 807  GEVFGSCCKLKGPDALTKFMIALHNAIGGIDTDKLPFSFFDRNEKNVQTLLTANKRVNMK 866

Query: 829  GKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLE 888
            G +IG FCF+QI  P+LQP+L+ Q  ++   +A++KELAYI QE+KNPL+GI F + LLE
Sbjct: 867  GDIIGAFCFLQIASPELQPSLKVQKQQEKKSFARMKELAYICQEIKNPLSGIHFTNSLLE 926

Query: 889  SSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVM 948
            ++ ++E+Q+Q+LETS ACE+QI+ II  +DL  IE G++EL+  EFLLG++++AVVSQ M
Sbjct: 927  NTDLTEDQQQFLETSAACEKQILKIIRDIDLESIENGSLELEKAEFLLGSVINAVVSQAM 986

Query: 949  VLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGL 1008
            +LLR++NL LL DIPEEIK L++ GD+ R+Q VL+DFL  +VR+APS  GWVEI V P L
Sbjct: 987  LLLRERNLQLLRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYAPSSAGWVEIHVCPTL 1046

Query: 1009 KLIKDADQFVHVQFR 1023
            K I D    VH +FR
Sbjct: 1047 KQISDGHTLVHTEFR 1061


>gi|78643896|emb|CAJ21311.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1325 bits (3430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/1065 (61%), Positives = 800/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSH AKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHPAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNIKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTGLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643914|emb|CAJ21320.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1325 bits (3430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1065 (61%), Positives = 800/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSTRCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGCINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGNCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF +I  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFFRIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +F+
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFK 1061


>gi|78643886|emb|CAJ21306.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1325 bits (3429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/1065 (61%), Positives = 799/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSTRCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNIKGDIIGPFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643938|emb|CAJ21332.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1325 bits (3429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1065 (61%), Positives = 800/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+   F FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLTFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643908|emb|CAJ21317.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1325 bits (3429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1065 (61%), Positives = 800/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFK 
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKH 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643910|emb|CAJ21318.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1325 bits (3428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1065 (61%), Positives = 800/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH  YM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAHYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643892|emb|CAJ21309.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1324 bits (3427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1065 (61%), Positives = 798/1065 (74%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ D ALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDSALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643858|emb|CAJ21292.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1324 bits (3426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1065 (61%), Positives = 797/1065 (74%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS      
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKDSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH  YM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAHYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643930|emb|CAJ21328.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1323 bits (3424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/1065 (61%), Positives = 800/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EA+GKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAVGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+   F FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLTFSFFDRNEKNVQTLLTANKRVNIKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643934|emb|CAJ21330.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1323 bits (3424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1065 (61%), Positives = 797/1065 (74%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQAPRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+ QP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNIKGDIIGPFCFLQIASPEFQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643922|emb|CAJ21324.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1323 bits (3423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/1065 (61%), Positives = 798/1065 (74%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+   F FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLTFSFFDRNEKNVQTLLTANKRVNIKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643904|emb|CAJ21315.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1323 bits (3423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1065 (61%), Positives = 798/1065 (74%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL ME Q+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMEFQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R +V+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGQVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNIKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643888|emb|CAJ21307.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1322 bits (3421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1065 (61%), Positives = 799/1065 (75%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + +PEEQITAYLSKIQRGG IQPFGCM A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSLPEEQITAYLSKIQRGGHIQPFGCMSAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIGLHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI   +LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASLELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643940|emb|CAJ21333.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1321 bits (3420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/1065 (61%), Positives = 796/1065 (74%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A  E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAANEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQAPRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH  YM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAHYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCKLKGPNSLTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643920|emb|CAJ21323.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1321 bits (3420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/1065 (61%), Positives = 798/1065 (74%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+   IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSHTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643880|emb|CAJ21303.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1321 bits (3420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/1035 (62%), Positives = 790/1035 (76%), Gaps = 46/1035 (4%)

Query: 31   PVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRG 90
            P       I  Y  DA L A FEQS  +GKSF+YS+SV +P + VPEEQITAYLSKIQRG
Sbjct: 31   PTESVSKAIAQYTVDAQLHAVFEQSGGTGKSFDYSKSVRTPNQSVPEEQITAYLSKIQRG 90

Query: 91   GLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPP 146
            G IQPFGCM+A +E +FR+I YSEN  +ML L  +S    E  E+   +G D R LF P 
Sbjct: 91   GHIQPFGCMIAADEQSFRVIAYSENAKDMLGLTPQSVPSLEKQEIL-FVGADVRILFRPS 149

Query: 147  SGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSL 206
            S   L KA  +REI+LLNPI +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+
Sbjct: 150  SAVLLEKAFGAREITLLNPIWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSI 207

Query: 207  AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
            AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVV+ V++LTGYDRVM+Y FH+D+HGEVV+
Sbjct: 208  AGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVDSVRELTGYDRVMVYKFHEDEHGEVVA 267

Query: 267  EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
            E +R DLEPY+G+H+P+ DIPQA+RFLFKQNRVRMI DCHAIPV VIQ + L QPLCLV 
Sbjct: 268  ENKRVDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHAIPVSVIQDEGLMQPLCLVG 327

Query: 327  STLRSPHGCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIP 378
            STLR+PHGCH QYM NMGSIASL MAVII   D        SM+LWGLVVCHHTS R IP
Sbjct: 328  STLRAPHGCHAQYMENMGSIASLAMAVIIYGNDEEAIGGRNSMRLWGLVVCHHTSARCIP 387

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+QAF LQL MELQ+A QL EK++LRTQ LLCDMLLRD+P  IVTQSPSIM
Sbjct: 388  FPLRYACEFLMQAFGLQLNMELQLASQLLEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIM 447

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALYY G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA 
Sbjct: 448  DLVKCDGAALYYQGQYYPLGVTPTEAQIKDIVEWLLTLHGDPTGLSTDSLADAGYPGAAF 507

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
            LG AVCGMA A I  +DFLFWFRSHTAKEVKWGGAKHHPE KD+G +MHPRSSFKAFLEV
Sbjct: 508  LGDAVCGMAVAYIAERDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSSFKAFLEV 567

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
            VK+RS PWE +E++AIHSLQ+++RDSF++ E  N SK   +TQ    ++QG+DELSSVA 
Sbjct: 568  VKSRSLPWENAEMDAIHSLQLILRDSFRDAEATN-SKAVVHTQLKDMELQGMDELSSVAR 626

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETATAPIF VD  G INGWNAKVAELTGL   EAMGKSL+ ++V++E +  V+ 
Sbjct: 627  EMVRLIETATAPIFAVDVEGRINGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDK 686

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            LI RA+ GEEDKNVE+KLR F  + Q   V+++VNAC+S+DY +N+ GVCFVGQD+T +K
Sbjct: 687  LIHRAVKGEEDKNVEIKLRTFCSEHQKKAVFVVVNACSSKDYMDNIVGVCFVGQDVTGQK 746

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794
            V+MDK++ +QGDY+AI+ S NP IPPIFASDEN CC EWN AMEK+TGW R EV+G    
Sbjct: 747  VVMDKYVLIQGDYKAIVHSPNPSIPPIFASDENTCCLEWNTAMEKLTGWSRGEVVGKMLV 806

Query: 795  --------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAE 828
                                      I G  T+  PF FF+R  + V+  LTA++R + +
Sbjct: 807  GEVFGSCCRLKGPDALTKFMIALHNAIGGIDTDKLPFSFFDRNEKNVQTLLTANKRVNMK 866

Query: 829  GKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLE 888
            G +IG FCF+QI  P+LQP+L+ Q  ++   +A++KELAYI QE+KNPL+GI F + LLE
Sbjct: 867  GDIIGAFCFLQIASPELQPSLKVQKQQEKKSFARMKELAYICQEIKNPLSGIHFTNSLLE 926

Query: 889  SSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVM 948
            ++ ++E+Q+Q+LETS ACE+QI+ II  +DL  IE G++EL+  EFLLG++++AVVSQ M
Sbjct: 927  NTDLTEDQQQFLETSAACEKQILKIIRDIDLESIENGSLELEKAEFLLGSVINAVVSQAM 986

Query: 949  VLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGL 1008
            +LLR++NL LL DIPEEIK L++ GD+ R+Q VL+DFL  +V +  S  GWVEI V P L
Sbjct: 987  LLLRERNLQLLRDIPEEIKTLAVYGDQARIQQVLADFLLNMVSYTQSSAGWVEIHVCPTL 1046

Query: 1009 KLIKDADQFVHVQFR 1023
            K I D    VH +FR
Sbjct: 1047 KQISDGHTLVHTEFR 1061


>gi|78643866|emb|CAJ21296.1| phytochrome B2 [Populus tremula]
          Length = 1144

 Score = 1321 bits (3419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/1065 (61%), Positives = 799/1065 (75%), Gaps = 48/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R +    +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNI--NIIGAFCFLQIASPELQPSLKVQKQQEKK 894

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 895  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 954

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 955  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1014

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1015 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1059


>gi|78643874|emb|CAJ21300.1| phytochrome B2 [Populus tremula]
          Length = 1144

 Score = 1321 bits (3419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/1065 (61%), Positives = 799/1065 (75%), Gaps = 48/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R +    +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNM--NIIGAFCFLQIASPELQPSLKVQKQQEKK 894

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 895  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 954

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 955  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1014

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1015 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1059


>gi|224108734|ref|XP_002314949.1| phytochrome B2 [Populus trichocarpa]
 gi|10954093|gb|AAG25726.1|AF309807_1 phytochrome B2 [Populus trichocarpa]
 gi|222863989|gb|EEF01120.1| phytochrome B2 [Populus trichocarpa]
          Length = 1146

 Score = 1321 bits (3419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 647/1027 (62%), Positives = 789/1027 (76%), Gaps = 46/1027 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            I  Y  DA L A FEQS  +G+SF+YS+SV +  + VPE+QITAYLSKIQRGG IQPFGC
Sbjct: 39   IAQYTVDAQLHAVFEQSGGTGRSFDYSKSVRTTNQSVPEQQITAYLSKIQRGGHIQPFGC 98

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
            M+A +E +FR+I YSEN  +ML L  +S    E  E+   +G D R LF P S   L KA
Sbjct: 99   MIAADEQSFRVIAYSENAKDMLGLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKA 157

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
              +REI+LLNPI +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQK
Sbjct: 158  FGAREITLLNPIWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQK 215

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LAV AIS+LQ+LPGGDI LLCDTVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLE
Sbjct: 216  LAVRAISQLQSLPGGDIKLLCDTVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLE 275

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PY+G+H+P+ DIPQA+RFLFKQNRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHG
Sbjct: 276  PYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHAIPVRVIQDEALMQPLCLVGSTLRAPHG 335

Query: 335  CHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYACE 386
            CH QYM NMGSIASL MAVII   D        SM+LWGLVVCHHTS R IPFPLRYACE
Sbjct: 336  CHAQYMENMGSIASLAMAVIIYGNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACE 395

Query: 387  FLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGA 446
            FL+QAF LQL MELQ+A QL EK++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGA
Sbjct: 396  FLMQAFGLQLNMELQLASQLLEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGA 455

Query: 447  ALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGM 506
            ALYY G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGM
Sbjct: 456  ALYYQGQYYPLGVTPTETQIKDIVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGM 515

Query: 507  ATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPW 566
            A A I  +DFLFWFRSHTAKEVKWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PW
Sbjct: 516  AVAYIAERDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPW 575

Query: 567  EVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIET 626
            E +E++AIHSLQ+++RDSF++ E  N SK   +TQ    ++QG+DELSSVA EMVRLIET
Sbjct: 576  ENAEMDAIHSLQLILRDSFRDAEATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIET 634

Query: 627  ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
            ATAPIF VD  G INGWNAKVAELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ G
Sbjct: 635  ATAPIFAVDVDGRINGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKG 694

Query: 687  EEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIR 746
            EEDKNVE+KLR F  + Q   V+++VNAC+S+DY +N+ GVCFVGQDIT +KV+MDK++ 
Sbjct: 695  EEDKNVEIKLRTFCSEHQKKAVFVVVNACSSKDYMDNIVGVCFVGQDITGQKVVMDKYVL 754

Query: 747  LQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------ 794
            +QGDY+AI+ S NP IPPIFASDEN CC EWN AMEK+TGW R EV+G            
Sbjct: 755  IQGDYKAIVHSPNPSIPPIFASDENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCC 814

Query: 795  ------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFC 836
                              I G  T+  PF FF+R  + V+  LTA++R + EG +IG FC
Sbjct: 815  RLKGPDALTKFMIALHNAIGGIDTDKLPFSFFDRNEKNVQTLLTANKRVNMEGDIIGAFC 874

Query: 837  FMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQ 896
            F+QI  P+LQ  L+ Q  ++   +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q
Sbjct: 875  FLQIASPELQQTLKVQKQQEKKSFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQ 934

Query: 897  RQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNL 956
            +Q+LETS ACE+QI+ II  +DL  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL
Sbjct: 935  QQFLETSAACEKQILKIIRDIDLESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNL 994

Query: 957  HLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQ 1016
             LL DIPEEIK L++ GD+ R+Q VL+DFL  +VR+APS  GWVEI V P LK I D   
Sbjct: 995  QLLRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHT 1054

Query: 1017 FVHVQFR 1023
             VH +F+
Sbjct: 1055 LVHTEFK 1061


>gi|78643946|emb|CAJ21336.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1321 bits (3419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/1035 (62%), Positives = 791/1035 (76%), Gaps = 46/1035 (4%)

Query: 31   PVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRG 90
            P       I  Y  DA L A FEQS  +GKSF+YS+SV +P + VPEEQITAYLSKIQRG
Sbjct: 31   PTESVSKAIAQYTVDAQLHAVFEQSGGTGKSFDYSKSVRTPNQSVPEEQITAYLSKIQRG 90

Query: 91   GLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPP 146
            G IQPFGCM+A +E +FR+I YSEN  +ML L  +S    E  E+   +G D R LF P 
Sbjct: 91   GHIQPFGCMIAADEQSFRVIAYSENAKDMLGLTPQSVPSLEKQEIL-FVGADVRILFRPS 149

Query: 147  SGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSL 206
            S   L KA  +REI+LLNPI +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+
Sbjct: 150  SAVLLEKAFGAREITLLNPIWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSI 207

Query: 207  AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
            AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVV+ V++LTGYDRVM+Y FH+D+HGEVV+
Sbjct: 208  AGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVDSVRELTGYDRVMVYKFHEDEHGEVVA 267

Query: 267  EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
            E +R DLEPY+G+H+P+ DIPQA RFLFKQNRVRMI DCHAIPV VIQ + L QPLCLV 
Sbjct: 268  ENKRVDLEPYIGLHYPSTDIPQAPRFLFKQNRVRMIVDCHAIPVSVIQDEGLMQPLCLVG 327

Query: 327  STLRSPHGCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIP 378
            STLR+PHGCH QYM NMGSIASL MAVII   D        SM+LWGLVVCHHTS R IP
Sbjct: 328  STLRAPHGCHAQYMENMGSIASLAMAVIIYGNDEEAIGGRNSMRLWGLVVCHHTSARCIP 387

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+QAF LQL MELQ+A QL EK++LRTQ LLCDMLLRD+P  IVTQSPSIM
Sbjct: 388  FPLRYACEFLMQAFGLQLNMELQLASQLLEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIM 447

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALYY G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA 
Sbjct: 448  DLVKCDGAALYYQGQYYPLGVTPTEAQIKDIVEWLLTLHGDPTGLSTDSLADAGYPGAAF 507

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
            LG AVCGMA A I  +DFLFWFRSHTAKEVKWGGAKHHPE KD+G +MHPRSSFKAFLEV
Sbjct: 508  LGDAVCGMAVAYIAERDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSSFKAFLEV 567

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
            VK+RS PWE +E++AIHSLQ+++RDSF++ E  N SK   +TQ    ++QG+DELSSVA 
Sbjct: 568  VKSRSLPWENAEMDAIHSLQLILRDSFRDAEATN-SKAVVHTQLKDMELQGMDELSSVAR 626

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETATAPIF VD  G INGWNAKVAELTGL   EAMGKSL+ ++V++E +  V+ 
Sbjct: 627  EMVRLIETATAPIFAVDVDGRINGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDK 686

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            LI RA+ GEEDKNVE+KLR F  + Q   V+++VNAC+S+DY +N+ GVCFVGQD+T +K
Sbjct: 687  LIHRAVKGEEDKNVEIKLRTFCSEHQKKAVFVVVNACSSKDYMDNIVGVCFVGQDVTGQK 746

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794
            V+MDK++ +QGDY+AI+ S NP IPPIFASDEN CC EWN A+EK+TGW R EV+G    
Sbjct: 747  VVMDKYVLIQGDYKAIVHSPNPSIPPIFASDENTCCLEWNTALEKLTGWSRGEVVGKMLV 806

Query: 795  --------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAE 828
                                      I G  T+  PF FF+R  + V+  LTA++R + +
Sbjct: 807  GEVFGSCCRLKGPDALTKFMIALHNAIGGIDTDKLPFSFFDRNEKNVQTLLTANKRVNIK 866

Query: 829  GKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLE 888
            G +IG FCF+QI  P+LQ +L+ Q  ++   +A++KELAYI QE+KNPL+GI F + LLE
Sbjct: 867  GDIIGPFCFLQIASPELQQSLKVQKQQEKKSFARMKELAYICQEIKNPLSGIHFTNSLLE 926

Query: 889  SSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVM 948
            ++ ++E+Q+Q+LETS ACE+QI+ II  +DL  IE G++EL+  EFLLG++++AVVSQ M
Sbjct: 927  NTDLTEDQQQFLETSAACEKQILKIIRDIDLESIENGSLELEKAEFLLGSVINAVVSQAM 986

Query: 949  VLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGL 1008
            +LLR++NL LL DIPEEIK L++ GD+ R+Q VL+DFL  +VR+APS  GWVEI V P L
Sbjct: 987  LLLRERNLQLLRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYAPSSAGWVEIHVCPTL 1046

Query: 1009 KLIKDADQFVHVQFR 1023
            K I D    VH +FR
Sbjct: 1047 KQISDGHTLVHTEFR 1061


>gi|78643902|emb|CAJ21314.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1321 bits (3419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/1065 (61%), Positives = 798/1065 (74%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI   +LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASLELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643868|emb|CAJ21297.1| phytochrome B2 [Populus tremula]
          Length = 1144

 Score = 1321 bits (3418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1065 (61%), Positives = 800/1065 (75%), Gaps = 48/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R +    +IG FCF+QI+ P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNM--NIIGAFCFLQIVSPELQPSLKVQKQQEKK 894

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 895  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 954

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 955  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1014

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1015 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1059


>gi|78643864|emb|CAJ21295.1| phytochrome B2 [Populus tremula]
          Length = 1144

 Score = 1321 bits (3418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1035 (62%), Positives = 791/1035 (76%), Gaps = 48/1035 (4%)

Query: 31   PVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRG 90
            P       I  Y  DA L A FEQS  +GKSF+YS+SV +P + VPEEQITAYLSKIQRG
Sbjct: 31   PTESVSKAIAQYTVDAQLHAVFEQSGGTGKSFDYSKSVRTPNQSVPEEQITAYLSKIQRG 90

Query: 91   GLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPP 146
            G IQPFGCM+A +E +FR+I YSEN  +ML L  +S    E  E+   +G D R LF P 
Sbjct: 91   GHIQPFGCMIAADEQSFRVIAYSENAKDMLGLTPQSVPSLEKQEIL-FVGADVRILFRPS 149

Query: 147  SGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSL 206
            S   L KA  +REI+LLNPI +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+
Sbjct: 150  SAVLLEKAFGAREITLLNPIWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSI 207

Query: 207  AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
            AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVV+ V++LTGYDRVM+Y FH+D+HGEVV+
Sbjct: 208  AGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVDSVRELTGYDRVMVYKFHEDEHGEVVA 267

Query: 267  EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
            E +R DLEPY+G+H+P+ DIPQA+RFLFKQNRVRMI DCHAIPV VIQ + L QPLCLV 
Sbjct: 268  ENKRVDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHAIPVSVIQDEGLMQPLCLVG 327

Query: 327  STLRSPHGCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIP 378
            STLR+PHGCH QYM NMGSIASL MAVII   D        SM+LWGLVVCHHTS R IP
Sbjct: 328  STLRAPHGCHAQYMENMGSIASLAMAVIIYGNDEEAIGGRNSMRLWGLVVCHHTSARCIP 387

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+QAF LQL MELQ+A QL EK++LRTQ LLCDMLLRD+P  IVTQSPSIM
Sbjct: 388  FPLRYACEFLMQAFGLQLNMELQLASQLLEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIM 447

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALYY G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA 
Sbjct: 448  DLVKCDGAALYYQGQYYPLGVTPTEAQIKDIVEWLLTLHGDPTGLSTDSLADAGYPGAAF 507

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
            LG AVCGMA A I  +DFLFWFRSHTAKEVKWGGAKHHPE KD+G +MHPRSSFKAFLEV
Sbjct: 508  LGDAVCGMAVAYIAERDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSSFKAFLEV 567

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
            VK+RS PWE +E++AIHSLQ+++RDSF++ E  N SK   +TQ    ++QG+DELSSVA 
Sbjct: 568  VKSRSLPWENAEMDAIHSLQLILRDSFRDAEATN-SKAVVHTQLKDMELQGMDELSSVAR 626

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETATAPIF VD  G INGWNAKVAELTGL   EAMGKSL+ ++V++E +  V+ 
Sbjct: 627  EMVRLIETATAPIFAVDVEGRINGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDK 686

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            LI RA+ GEEDKNVE+KLR F  + Q   V+++VNAC+S+DY +N+ GVCFVGQD+T +K
Sbjct: 687  LIHRAVKGEEDKNVEIKLRTFCSEHQKKAVFVVVNACSSKDYMDNIVGVCFVGQDVTGQK 746

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794
            V+MDK++ +QGDY+AI+ S NP IPPIFASDEN CC EWN AMEK+TGW R EV+G    
Sbjct: 747  VVMDKYVLIQGDYKAIVHSPNPSIPPIFASDENTCCLEWNTAMEKLTGWSRGEVVGKMLV 806

Query: 795  --------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAE 828
                                      I G  T+  PF FF+R  + V+  LTA++R +  
Sbjct: 807  GEVFGSCCRLKGPDALTKFMIALHNAIGGIDTDKLPFSFFDRNEKNVQTLLTANKRVNI- 865

Query: 829  GKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLE 888
              +IG FCF+QI  P+LQP+L+ Q  ++   +A++KELAYI QE+KNPL+GI F + LLE
Sbjct: 866  -NIIGAFCFLQIASPELQPSLKVQKQQEKKSFARMKELAYICQEIKNPLSGIHFTNSLLE 924

Query: 889  SSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVM 948
            ++ ++E+Q+Q+LETS ACE+QI+ II  +DL  IE G++EL+  EFLLG++++AVVSQ M
Sbjct: 925  NTDLTEDQQQFLETSAACEKQILKIIRDIDLESIENGSLELEKAEFLLGSVINAVVSQAM 984

Query: 949  VLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGL 1008
            +LLR++NL LL DIPEEIK L++ GD+ R+Q VL+DFL  +VR+APS  GWVEI V P L
Sbjct: 985  LLLRERNLQLLRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYAPSSAGWVEIHVCPTL 1044

Query: 1009 KLIKDADQFVHVQFR 1023
            K I D    VH +FR
Sbjct: 1045 KQISDGHTLVHTEFR 1059


>gi|78643932|emb|CAJ21329.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1320 bits (3417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1065 (61%), Positives = 796/1065 (74%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFK 
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKH 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH  YM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAHYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFERNEKNVQTLLTANKRVNMKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|297740631|emb|CBI30813.3| unnamed protein product [Vitis vinifera]
          Length = 877

 Score = 1320 bits (3416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/872 (71%), Positives = 732/872 (83%), Gaps = 33/872 (3%)

Query: 252  MLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVM 311
            M+Y FHDDDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVR+ICDC+A  V 
Sbjct: 1    MVYKFHDDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRIICDCNAKAVR 60

Query: 312  VIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHH 371
            VIQS+ELKQPLCLVNSTLRSPHGCHLQYM NMG IASL MAV+IN  D+ KLWGLVVCHH
Sbjct: 61   VIQSEELKQPLCLVNSTLRSPHGCHLQYMFNMGCIASLAMAVVINGNDATKLWGLVVCHH 120

Query: 372  TSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIV 431
            TSPRY+PFPLRYACEFL+QAF LQLYMELQ+A QLAEK ILR Q LLCDMLLR+AP  IV
Sbjct: 121  TSPRYVPFPLRYACEFLMQAFGLQLYMELQLASQLAEKKILRMQTLLCDMLLREAPLGIV 180

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            T SPSIMDL+KCDGAALYYGGRCWL+GVTPTESQ+KDIA WLL  HGD TGLSTDSLA+A
Sbjct: 181  THSPSIMDLLKCDGAALYYGGRCWLLGVTPTESQVKDIAEWLLTEHGDSTGLSTDSLADA 240

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
            GYPGAALLG AVCGMATARITSKDFL WFRSHTAKEVKWGGAKHHPE KD+GG+MHPRSS
Sbjct: 241  GYPGAALLGDAVCGMATARITSKDFLLWFRSHTAKEVKWGGAKHHPEDKDDGGRMHPRSS 300

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVD 611
            FKAFLEVVK+RS PWEVS+INAIHSLQ++MRDSFQ++E+ +  KV  +TQ+  S+MQG++
Sbjct: 301  FKAFLEVVKSRSLPWEVSDINAIHSLQLIMRDSFQDIEDSS-GKVMVHTQKYDSEMQGLN 359

Query: 612  ELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEE 671
            EL SVACEMV+LIETATAPIFGVDSSG INGWNAK+AELTGL A EAMGKSL+DE+VHE+
Sbjct: 360  ELGSVACEMVKLIETATAPIFGVDSSGCINGWNAKIAELTGLQAKEAMGKSLVDEIVHED 419

Query: 672  SQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVG 731
             +GAV+NL+CRAL G+EDKNVELKL+ F L +Q S +YI+VNACTSRDY N++ GVCFVG
Sbjct: 420  LRGAVDNLLCRALQGKEDKNVELKLKNFGLNQQDSALYIVVNACTSRDYTNDIVGVCFVG 479

Query: 732  QDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHE 791
            QDIT EK++MDKFIRLQGDY+AI+Q +NPLIPPIFASD NACCSEWN ++EK+TG MRHE
Sbjct: 480  QDITSEKIVMDKFIRLQGDYKAIVQCLNPLIPPIFASDGNACCSEWNTSLEKLTGCMRHE 539

Query: 792  VI------------------------------GITGQGTENFPFGFFNRQGQFVEVALTA 821
            VI                               I+GQ TE FPFGFF++ G+ VEV LTA
Sbjct: 540  VIRKMLPGEVFGGLCPLKSQDTLTRFTILLYQAISGQDTEKFPFGFFDKSGKLVEVLLTA 599

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++RTDA G VIGCFCF+QI  PD    L   G E  + ++K KELAYIRQE+KNPLNGIR
Sbjct: 600  NKRTDANGNVIGCFCFLQIDTPDKHQGL-GHGPEYRECFSKFKELAYIRQEMKNPLNGIR 658

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F HKLLE+++ S  Q+Q+LETS+ACERQ+M+II  +D+  IEEG+MEL  EEFLLGN+LD
Sbjct: 659  FTHKLLETTATSVYQKQFLETSEACERQMMSIIADIDMGIIEEGSMELNVEEFLLGNVLD 718

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
            AVVSQVM+LL++K L L+ +IPEEIK L L+GD+I+LQ VLSDFLH +V HAPS DGW+E
Sbjct: 719  AVVSQVMMLLKEKKLQLVCEIPEEIKTLPLSGDQIKLQQVLSDFLHNIVHHAPSSDGWIE 778

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            IK+  GLK+I+D ++FVH+QFR+TH G+G+P  LI+DM+ G +QW T EGLGL LSRKLL
Sbjct: 779  IKISTGLKMIQDFNEFVHLQFRMTHIGQGLPPDLIQDMFEGGDQWNTQEGLGLNLSRKLL 838

Query: 1062 IMMNGRVRYVRENSKCYFVIDLELKT-RGRQK 1092
              MNGRV+YVRE+ KCYF++D++LK  R R+K
Sbjct: 839  SAMNGRVQYVREHGKCYFLVDIDLKNRRAREK 870


>gi|78643860|emb|CAJ21293.1| phytochrome B2 [Populus tremula]
          Length = 1144

 Score = 1320 bits (3415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/1065 (61%), Positives = 798/1065 (74%), Gaps = 48/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A  E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAANEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R +    +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNM--NIIGAFCFLQIASPELQPSLKVQKQQEKK 894

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 895  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 954

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 955  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1014

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1015 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1059


>gi|78643924|emb|CAJ21325.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1320 bits (3415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1065 (61%), Positives = 795/1065 (74%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEHSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH  YM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAHYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSTRCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF R  + V+  LTA++R + +G +IG FCF QI  P+ QP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFERNEKNVQTLLTANKRVNIKGDIIGPFCFFQIASPEFQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643870|emb|CAJ21298.1| phytochrome B2 [Populus tremula]
          Length = 1144

 Score = 1319 bits (3413), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/1065 (61%), Positives = 797/1065 (74%), Gaps = 48/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R +    +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNI--NIIGAFCFLQIASPELQPSLKVQKQQEKK 894

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 895  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 954

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 955  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1014

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1015 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1059


>gi|78643882|emb|CAJ21304.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1318 bits (3411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1065 (61%), Positives = 798/1065 (74%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS   IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSTTCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPNALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+   F FF+R  + V+  LTA++R + +G +IG FCF+QI   +LQP+L+ Q  ++  
Sbjct: 837  DTDKLTFSFFDRNEKNVQTLLTANKRVNIKGDIIGAFCFLQIASLELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|78643928|emb|CAJ21327.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1318 bits (3410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1065 (61%), Positives = 795/1065 (74%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS   IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSTTCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+   IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSHTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF QI  P+ QP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNIKGDIIGPFCFFQIASPEFQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|168042146|ref|XP_001773550.1| phytochrome 4 [Physcomitrella patens subsp. patens]
 gi|139001628|dbj|BAF51710.1| phytochrome4 [Physcomitrella patens]
 gi|162675089|gb|EDQ61588.1| phytochrome 4 [Physcomitrella patens subsp. patens]
          Length = 1126

 Score = 1316 bits (3407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/1104 (58%), Positives = 815/1104 (73%), Gaps = 56/1104 (5%)

Query: 33   NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQR 89
            +K    +    ADA L A +E+S  SG SF+YS+SV    S  E VP   +TAYL ++QR
Sbjct: 16   SKHSVRVAQTTADAKLQAVYEESGDSGDSFDYSKSVHASKSTGENVPALAVTAYLQRMQR 75

Query: 90   GGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTP 145
            GGL+Q FGCML V+E +FR+I YSEN  EMLDL  ++       E+ G IG DARTLFTP
Sbjct: 76   GGLVQTFGCMLCVDESSFRVIAYSENAPEMLDLMPQAVPSVGQQEVLG-IGTDARTLFTP 134

Query: 146  PSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALS 205
             S A+L K A + ++++LNPI VH   RS  KPFYAILHRIDVG+VID EP +  D  +S
Sbjct: 135  SSAAALEKCAGAVDVTMLNPISVHC--RSSGKPFYAILHRIDVGLVIDFEPVRPNDAVVS 192

Query: 206  LAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVV 265
             AGA+QS KLA  AISRLQALPGGDIGLLCDTVVE+V++L+GYDRVM Y FH+D+HGEV+
Sbjct: 193  SAGALQSHKLAAKAISRLQALPGGDIGLLCDTVVEEVRQLSGYDRVMAYKFHEDEHGEVL 252

Query: 266  SEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLV 325
            +EIRRSDLEPYLG+H+PA DIPQA+RFLF +NRVRMI DC+A PV V+Q K+L+QP+ L 
Sbjct: 253  AEIRRSDLEPYLGLHYPATDIPQASRFLFMKNRVRMIGDCYAPPVKVVQDKDLRQPISLA 312

Query: 326  NSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-----------SMKLWGLVVCHHTSP 374
             STLR+PHGCH QYM NM SIASLVMAVI+N  D             KLWGLVVCHHTSP
Sbjct: 313  GSTLRAPHGCHAQYMGNMNSIASLVMAVIVNDPDEDPNSRGGQQRGRKLWGLVVCHHTSP 372

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            R + FPLR ACEFL+Q F LQL ME+++A QL EK+ILRTQ LLCDMLLRDAP  IV+QS
Sbjct: 373  RTVSFPLRSACEFLMQVFGLQLNMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQS 432

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYP 494
            P+IMDLVKCDGAALYYG R WL+G+TP E Q+K+IA WLL +H D TGLSTDSLA+AGYP
Sbjct: 433  PNIMDLVKCDGAALYYGKRFWLLGITPNEVQIKEIADWLLEHHQDSTGLSTDSLADAGYP 492

Query: 495  GAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKA 554
            GAA LG AVCGMA A+IT +DFLFWFRSHTAKE+KWGGAKH P+ KD+G KMHPRSSFKA
Sbjct: 493  GAAQLGDAVCGMAAAKITPRDFLFWFRSHTAKEIKWGGAKHDPDEKDDGRKMHPRSSFKA 552

Query: 555  FLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELS 614
            FLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+QG+DELS
Sbjct: 553  FLEVVKRRSLPWEDIEMDAIHSLQLILRGSFQDI-DDSDTKTMIHARLNDLKLQGMDELS 611

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            +VA EMVRLIETATAPI  VDSSG INGWNAKVAELTGLP  EAMG+SL+ +++ EES  
Sbjct: 612  TVANEMVRLIETATAPILAVDSSGFINGWNAKVAELTGLPVGEAMGRSLVKDLILEESID 671

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V+ L+  AL GEE++N+E++L+ F  QK+   V ++VNAC+SRD ++NV GVCFVGQD+
Sbjct: 672  VVQRLLYLALQGEEEQNIEIQLKTFGPQKEKGAVILIVNACSSRDVQDNVVGVCFVGQDV 731

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +K ++DKF R+QGDY+AI+Q+ NPLIPPIF +DE   CSEWN +MEK+TGW R EV+G
Sbjct: 732  TGQKQVLDKFTRIQGDYKAIVQNPNPLIPPIFGTDEYGYCSEWNPSMEKLTGWKREEVLG 791

Query: 795  ---------------------------------ITGQGTENFPFGFFNRQGQFVEVALTA 821
                                             + GQ T+ FPF FF+RQG++V+  LT 
Sbjct: 792  KLLVGEIFGMQLMCCRLKGQDAMTKFMIALNSAMDGQDTDRFPFSFFDRQGKYVDALLTV 851

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++RTDAEG + G FCF+     +L  AL  Q   +   +AK+KELAYIRQE+KNPL GI 
Sbjct: 852  NKRTDAEGSITGVFCFLHTTSVELLQALTVQRATEKVAFAKLKELAYIRQEIKNPLYGIM 911

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F   L+E + +SE+QRQ++ETS  CERQ+  ++D MDL  IE+G +EL + EF++G ++D
Sbjct: 912  FTRNLMEDTDLSEDQRQFVETSAVCERQLRKVLDDMDLESIEDGYLELDTNEFVMGTVMD 971

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
            AVVSQ M+  R+K L L+ + P EIK + L GD++RLQ VL+DFL   VR  PS +GWV 
Sbjct: 972  AVVSQGMITSREKGLQLIRETPREIKNMCLFGDQVRLQQVLADFLLNAVRFTPSSEGWVG 1031

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            IKV+P  K +      +H++FR+TH G G+P  L+ +M++ R +  T EGLGL + RKL+
Sbjct: 1032 IKVVPTKKRLGGGIHVMHLEFRVTHSGMGLPEELVHEMFD-RGRGMTQEGLGLSMCRKLV 1090

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
             +MNG V+Y+RE  K YF++++EL
Sbjct: 1091 KLMNGNVQYIRETGKSYFLVEVEL 1114


>gi|78643862|emb|CAJ21294.1| phytochrome B2 [Populus tremula]
          Length = 1144

 Score = 1316 bits (3406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1065 (61%), Positives = 796/1065 (74%), Gaps = 48/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+ GAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSITGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EA+GKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAVGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R +    +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNI--NIIGAFCFLQIASPELQPSLKVQKQQEKK 894

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 895  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 954

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 955  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1014

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1015 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1059


>gi|57791668|gb|AAW56602.1| phytochrome D [Arabidopsis thaliana]
          Length = 1164

 Score = 1315 bits (3404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1098 (58%), Positives = 822/1098 (74%), Gaps = 55/1098 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPP--EGVPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ + P    VPE+QITAYLS+IQRGG  QPF
Sbjct: 60   IQQYTVDARLHAVFEQSGESGKSFDYSQSLKTAPYDSSVPEQQITAYLSRIQRGGYTQPF 119

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GC++AVEE TF IIGYSEN  EML L S+S    ED      IG D R+LF   S   L 
Sbjct: 120  GCLIAVEESTFTIIGYSENAREMLGLMSQSVPSIEDKSEVLTIGTDLRSLFKSSSYLLLE 179

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +REI+LLNPI +HSN+    KPFYAILHR+DVGI+IDLEP+++ DPALS+AGAVQS
Sbjct: 180  RAFVAREITLLNPIWIHSNNTG--KPFYAILHRVDVGILIDLEPARTEDPALSIAGAVQS 237

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AIS LQ+LP GDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R+D
Sbjct: 238  QKLAVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRND 297

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V+Q   L Q +CLV STLR+P
Sbjct: 298  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQSICLVGSTLRAP 357

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPFP 380
            HGCH QYMTNMGSIASL MAVIIN             ++SM+LWGLVVCHHTS R IPFP
Sbjct: 358  HGCHAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFP 417

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQ PSIMDL
Sbjct: 418  LRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVTQRPSIMDL 477

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKC+GAA  Y G+ + +GVTPT+SQ+ DI  WLL NH D TGLSTDSL +AGYP AA LG
Sbjct: 478  VKCNGAAFLYQGKYYSLGVTPTDSQINDIVEWLLANHSDSTGLSTDSLGDAGYPRAAALG 537

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
             AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +M+PRSSF+AFLEVVK
Sbjct: 538  DAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMNPRSSFQAFLEVVK 597

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVA 617
            +R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA
Sbjct: 598  SRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVA 657

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRLI+TAT PIF VD  G INGWNAK+AELTGL   +AMGKSL+ E++++E +  V+
Sbjct: 658  REMVRLIKTATVPIFAVDIDGCINGWNAKIAELTGLSVEDAMGKSLVRELIYKEYKETVD 717

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             L+  AL G+E KNVE+KL+ F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T  
Sbjct: 718  RLLSSALKGDEGKNVEVKLKTFGSELQGKAMFVVVNACSSKDYLNNIVGVCFVGQDVTGH 777

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--- 794
            K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TGW R EVIG   
Sbjct: 778  KIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWPRSEVIGKLL 837

Query: 795  ---------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       I GQ T+ FPF FF+R+G+F++  LT ++R   
Sbjct: 838  VREVFGSYCRLKGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRKGEFIQALLTLNKRVSV 897

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            +GK+IG FCF+QI  P+LQ ALE Q  ++ + +++ KELAYI Q +KNPL+G+RF + LL
Sbjct: 898  DGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKELAYIFQVIKNPLSGLRFTNSLL 957

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E + ++E+Q+Q LETS +CE+QI  I+  MD++ I++G+  L+  EF +GN+ +AVVSQV
Sbjct: 958  EDTDLNEDQKQLLETSVSCEKQISKIVGDMDVKSIDDGSFLLERTEFFIGNVTNAVVSQV 1017

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M+++R++NL L+ +IP E+K++++ GD+IRLQ VL++FL  +VR+AP  +G VE+ + P 
Sbjct: 1018 MLVVRERNLQLIRNIPTEVKSMAVYGDQIRLQQVLAEFLLSIVRYAPM-EGSVELHLCPT 1076

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
            L  + D    V ++FR+   GEG+P   ++DM++  ++WT+PEGLGL + RK+L +MNG 
Sbjct: 1077 LNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHS-SRWTSPEGLGLSVCRKILKLMNGG 1135

Query: 1068 VRYVRENSKCYFVIDLEL 1085
            V+Y+RE  + YF+I +EL
Sbjct: 1136 VQYIREFERSYFLIVIEL 1153


>gi|78643872|emb|CAJ21299.1| phytochrome B2 [Populus tremula]
          Length = 1144

 Score = 1315 bits (3404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/1065 (61%), Positives = 798/1065 (74%), Gaps = 48/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N SK   +TQ    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R +    +IG FCF+QI   +LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNI--NIIGAFCFLQIASLELQPSLKVQKQQEKK 894

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 895  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 954

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 955  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1014

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+AP+  GWVEI V P LK I D    VH +FR
Sbjct: 1015 QQVLADFLLNMVRYAPASAGWVEIHVCPTLKQISDGHTLVHTEFR 1059


>gi|57791652|gb|AAW56594.1| phytochrome D [Arabidopsis thaliana]
 gi|57791654|gb|AAW56595.1| phytochrome D [Arabidopsis thaliana]
          Length = 1164

 Score = 1315 bits (3404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/1098 (58%), Positives = 821/1098 (74%), Gaps = 55/1098 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPP--EGVPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S  + P    VPE+QITAYLS+IQRGG  QPF
Sbjct: 60   IQQYTVDARLHAVFEQSGESGKSFDYSQSRKTAPYDSSVPEQQITAYLSRIQRGGYTQPF 119

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GC++AVEE TF IIGYSEN  EML L S+S    ED      IG D R+LF   S   L 
Sbjct: 120  GCLIAVEESTFTIIGYSENAREMLGLMSQSVPSIEDKSEVLTIGTDLRSLFKSSSYLLLE 179

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +REI+LLNPI +HSN+    KPFYAILHR+DVGI+IDLEP+++ DPALS+AGAVQS
Sbjct: 180  RAFVAREITLLNPIWIHSNNTG--KPFYAILHRVDVGILIDLEPARTEDPALSIAGAVQS 237

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AIS LQ+LP GDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R+D
Sbjct: 238  QKLAVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRND 297

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V+Q   L Q +CLV STLR+P
Sbjct: 298  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQSICLVGSTLRAP 357

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPFP 380
            HGCH QYMTNMGSIASL MAVIIN             ++SM+LWGLVVCHHTS R IPFP
Sbjct: 358  HGCHAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFP 417

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQ PSIMDL
Sbjct: 418  LRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVTQRPSIMDL 477

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKC+GAA  Y G+ + +GVTPT+SQ+ DI  WLL NH D TGLSTDSL +AGYP AA LG
Sbjct: 478  VKCNGAAFLYQGKYYSLGVTPTDSQINDIVEWLLANHSDSTGLSTDSLGDAGYPRAAALG 537

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
             AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +M+PRSSF+AFLEVVK
Sbjct: 538  DAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMNPRSSFQAFLEVVK 597

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVA 617
            +R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA
Sbjct: 598  SRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVA 657

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRLIETAT PIF VD  G INGWNAK+AELTGL   +AMGKSL+ E++++E +  V+
Sbjct: 658  REMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEDAMGKSLVRELIYKEYKETVD 717

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             L+  AL G+E KNVE+KL+ F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T  
Sbjct: 718  RLLSSALKGDEGKNVEVKLKTFGSELQGKAMFVVVNACSSKDYLNNIVGVCFVGQDVTGH 777

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--- 794
            K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TGW R EVIG   
Sbjct: 778  KIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWPRSEVIGKLL 837

Query: 795  ---------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       I GQ T+ FPF FF+R+G+F++  LT ++R   
Sbjct: 838  VREVFGSYCRLKGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRKGEFIQALLTLNKRVSV 897

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            +GK+IG FCF+QI  P+LQ ALE Q  ++ + +++ KELAYI Q +KNPL+G+RF + LL
Sbjct: 898  DGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKELAYIFQVIKNPLSGLRFTNSLL 957

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E + ++E+Q+Q LETS +CE+QI  I+  MD++ I++G+  L+  EF +GN+ +AVVSQV
Sbjct: 958  EDTDLNEDQKQLLETSVSCEKQISKIVGDMDVKSIDDGSFLLERTEFFIGNVTNAVVSQV 1017

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M+++R++NL L+ +IP E+K++++ GD+IRLQ VL++FL  +VR+AP  +G VE+ + P 
Sbjct: 1018 MLVVRERNLQLIRNIPTEVKSMAVYGDQIRLQQVLAEFLLSIVRYAPM-EGSVELHLCPT 1076

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
            L  + D    V ++FR+   GEG+P   ++DM++  ++WT+PEGLGL + RK+L +MNG 
Sbjct: 1077 LNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHS-SRWTSPEGLGLSVCRKILKLMNGG 1135

Query: 1068 VRYVRENSKCYFVIDLEL 1085
            V+Y+RE  + YF+I +EL
Sbjct: 1136 VQYIREFERSYFLIVIEL 1153


>gi|78643942|emb|CAJ21334.1| phytochrome B2 [Populus tremula]
          Length = 1144

 Score = 1315 bits (3403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1065 (61%), Positives = 796/1065 (74%), Gaps = 48/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFK 
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKH 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCKLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R +    +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNM--NIIGAFCFLQIASPELQPSLKVQKQQEKK 894

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 895  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 954

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 955  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1014

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1015 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1059


>gi|78643936|emb|CAJ21331.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1315 bits (3402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 645/1035 (62%), Positives = 787/1035 (76%), Gaps = 46/1035 (4%)

Query: 31   PVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRG 90
            P       I  Y  DA L A FEQS  +GKSF+YS+SV +P + VPEEQITAYLSKIQRG
Sbjct: 31   PTESVSKAIAQYTVDAQLHAVFEQSGGTGKSFDYSKSVRTPNQSVPEEQITAYLSKIQRG 90

Query: 91   GLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPP 146
            G IQPFGCM+A +E +FR+I YSEN  +ML L  +S    E  E+   +G D R LF P 
Sbjct: 91   GHIQPFGCMIAADEQSFRVIAYSENAKDMLGLTPQSVPSLEKQEIL-FVGADVRILFRPS 149

Query: 147  SGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSL 206
            S   L KA  +REI+LLNPI +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+
Sbjct: 150  SAVLLEKAFGAREITLLNPIWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSI 207

Query: 207  AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
            AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVV+ V++LTGYDRVM+Y FH+D+HGEVV+
Sbjct: 208  AGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVDSVRELTGYDRVMVYKFHEDEHGEVVA 267

Query: 267  EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
            E +R DLEPY+G+H+P+ DIPQA+RFLFK NRVRMI DCHAIPV VIQ + L QPLCLV 
Sbjct: 268  ENKRVDLEPYIGLHYPSTDIPQASRFLFKHNRVRMIVDCHAIPVSVIQDEGLMQPLCLVG 327

Query: 327  STLRSPHGCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIP 378
            STLR+PHGCH QYM NMGSIASL MAVII   D        SM+LWGLVVCHHTS R IP
Sbjct: 328  STLRAPHGCHAQYMENMGSIASLAMAVIIYGNDEEAIGGRNSMRLWGLVVCHHTSARCIP 387

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+QAF LQL MELQ+A QL EK++LRTQ LLCDMLLRD+P  IVTQSPSIM
Sbjct: 388  FPLRYACEFLMQAFGLQLNMELQLASQLLEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIM 447

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALYY G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA 
Sbjct: 448  DLVKCDGAALYYQGQYYPLGVTPTEAQIKDIVEWLLTLHGDPTGLSTDSLADAGYPGAAF 507

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
            LG AVCGMA A I  +DFLFWFRSHTAKEVKWGGAKHHPE KD+G +MHPRSSFKAFLEV
Sbjct: 508  LGDAVCGMAVAYIAERDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSSFKAFLEV 567

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
            VK+RS PWE +E++AIHSLQ+++RDSF++ E  N   V  N Q    ++QG+DELSSVA 
Sbjct: 568  VKSRSLPWENAEMDAIHSLQLILRDSFRDAEATNSKAVVHN-QLKDMELQGMDELSSVAR 626

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETATAPIF VD  G INGWNAKVAELTGL   EAMGKSL+ ++V++E +  V+ 
Sbjct: 627  EMVRLIETATAPIFAVDVDGRINGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDK 686

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            LI RA+ GEEDKNVE+KLR F  + Q   V+++VNAC+S+DY +N+ GVCFVGQD+T +K
Sbjct: 687  LIHRAVKGEEDKNVEIKLRTFCSEHQKKAVFVVVNACSSKDYMDNIVGVCFVGQDVTGQK 746

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794
            V+MDK++ +QGDY+AI+ S NP IPPIFASDEN CC EWN A+EK+TGW R EV+G    
Sbjct: 747  VVMDKYVLIQGDYKAIVHSPNPSIPPIFASDENTCCLEWNTALEKLTGWSRGEVVGKMLV 806

Query: 795  --------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAE 828
                                      I G  T+  PF FF+R  + V+  LTA++R + +
Sbjct: 807  GEVFGSCCKLKGPNSLTKFMIALHNAIGGIDTDKLPFSFFDRNEKNVQTLLTANKRVNMK 866

Query: 829  GKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLE 888
            G +IG FCF+QI  P+LQP+L+ Q  ++   +A++KELAYI QE+KNPL+GI F + LLE
Sbjct: 867  GDIIGAFCFLQIASPELQPSLKVQKQQEKKSFARMKELAYICQEIKNPLSGIHFTNSLLE 926

Query: 889  SSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVM 948
            ++ ++E+Q+Q+LETS ACE+QI+ II  +DL  IE G++EL+  EFLLG++++AVVSQ M
Sbjct: 927  NTDLTEDQQQFLETSAACEKQILKIIRDIDLESIENGSLELEKAEFLLGSVINAVVSQAM 986

Query: 949  VLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGL 1008
            +LLR++NL LL DIPEEIK L++ GD+ R+Q VL+DFL  +V +  S  GWVEI V P L
Sbjct: 987  LLLRERNLQLLRDIPEEIKTLAVYGDQARIQQVLADFLLNMVIYTQSSAGWVEIHVCPTL 1046

Query: 1009 KLIKDADQFVHVQFR 1023
            K I D    VH +FR
Sbjct: 1047 KQISDGHTLVHTEFR 1061


>gi|57791679|gb|AAW56607.1| phytochrome B [Cleome hassleriana]
          Length = 1045

 Score = 1315 bits (3402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/1048 (61%), Positives = 803/1048 (76%), Gaps = 55/1048 (5%)

Query: 58   SGKSFNYSRSVISPPEG--VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSEN 115
            SGKSF+YSRS+ +   G  VPE+QITAYLSKIQRGG IQPFGCM+AV+E TF+II YSEN
Sbjct: 3    SGKSFDYSRSLKTTTYGSSVPEKQITAYLSKIQRGGYIQPFGCMIAVDESTFKIISYSEN 62

Query: 116  CLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSN 171
              EML L  +S    E  E+   IG D R+LFTP S   L +A  +REI+LLNP+ +HS 
Sbjct: 63   AREMLGLMPQSVPSIEKPEILA-IGTDVRSLFTPSSTVLLERAFVAREITLLNPVWIHS- 120

Query: 172  SRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDI 231
             ++  KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI
Sbjct: 121  -KNTGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDI 179

Query: 232  GLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAAR 291
             LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R+DLEPY+G+H+PA DIPQA+R
Sbjct: 180  KLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRADLEPYIGLHYPATDIPQASR 239

Query: 292  FLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVM 351
            FLFKQNRVRMI DCHA PV VIQ + L QPLCLV STLR+PHGCH QYM NMGS+ASL M
Sbjct: 240  FLFKQNRVRMIVDCHATPVCVIQDERLTQPLCLVGSTLRAPHGCHAQYMANMGSLASLAM 299

Query: 352  AVIINS-----------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMEL 400
            AVIIN            ++SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MEL
Sbjct: 300  AVIINGNEEEAGSVAGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMEL 359

Query: 401  QVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVT 460
            Q+A+Q++EK +LRTQ LLCDMLLRD+P  IVTQ PSIMDLVKCDGAA  Y GR + +GV 
Sbjct: 360  QLALQMSEKRVLRTQTLLCDMLLRDSPTGIVTQKPSIMDLVKCDGAAFLYQGRYYPLGVA 419

Query: 461  PTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWF 520
            P+E+Q+KDI  WLL NHGD TGLSTDSLA+AGYPGAA LG AVCGMA A IT KDFLFWF
Sbjct: 420  PSEAQIKDIVEWLLANHGDSTGLSTDSLADAGYPGAATLGDAVCGMAVAYITRKDFLFWF 479

Query: 521  RSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIV 580
            RSHTAKE+KWGGAKHHPE KD+  +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ++
Sbjct: 480  RSHTAKEIKWGGAKHHPEDKDDSQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLI 539

Query: 581  MRDSFQEMEEENDSKVQGNTQQNGSKM--QGVDELSSVACEMVRLIETATAPIFGVDSSG 638
            +RDSF+E E  N ++V     Q G  M  QG+DELS+VA EMVRLIETAT PI  VD  G
Sbjct: 540  LRDSFKESETVN-TRVAVRADQPGGDMAVQGLDELSAVAREMVRLIETATVPILAVDVEG 598

Query: 639  TINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRK 698
             INGWN K+AELTGL   EAMGKSL+ +++++E +  VE L+  AL GEEDKNVE+K++ 
Sbjct: 599  RINGWNGKIAELTGLSVEEAMGKSLVRDLIYKEYEETVEKLLSHALRGEEDKNVEIKMKT 658

Query: 699  FELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSV 758
            F  + +   V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S 
Sbjct: 659  FSRELEGQAVFVVVNACSSKDYLNNIVGVCFVGQDVTGQKIVMDKFIHIQGDYKAIVHSP 718

Query: 759  NPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------------------ 794
            NPLIPPIFA+DEN CC EWN AMEK+TGW R EVIG                        
Sbjct: 719  NPLIPPIFAADENTCCLEWNTAMEKLTGWSRAEVIGKMLVGEVFGSCCRLKGPDTLTKFM 778

Query: 795  ------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPA 848
                  I G+ T+ F F FF+R G+FV+  LTA++R   +GK+ G FCFMQI  P+LQ A
Sbjct: 779  IVLHNAIGGEETDKFSFPFFDRNGKFVQALLTANKRVSIDGKITGAFCFMQIPSPELQQA 838

Query: 849  LEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACER 908
            L  Q  ++ +  ++ KELAYI Q +KNPL+G+RF + LLE++ +SE+Q+Q LETS +CE+
Sbjct: 839  LAVQRQQETECISRAKELAYICQVIKNPLSGLRFTNLLLEATGLSEDQKQLLETSVSCEK 898

Query: 909  QIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKA 968
            QI  II  M+L  IE+G +E++ EEF++G++++AVVSQVM+L+R++ L L+ DIPEEIK 
Sbjct: 899  QISRIIGDMNLETIEDGLVEVEKEEFIMGSVINAVVSQVMMLVRERGLQLIRDIPEEIKT 958

Query: 969  LSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPG 1028
            +++ GD++R+Q VL++FL  ++++APS  GWVEI + P LK + D    +  +FR+   G
Sbjct: 959  MAVYGDQMRIQQVLAEFLLSIIKYAPS-QGWVEIHLNPILKHLPDGSSSLRSEFRMACGG 1017

Query: 1029 EGIPSHLIEDMYNGRNQWTTPEGLGLKL 1056
            EG+P  L+ DM++G ++WTTPEGLGL +
Sbjct: 1018 EGLPPELVRDMFHG-SRWTTPEGLGLSV 1044


>gi|57791670|gb|AAW56603.1| phytochrome D [Arabidopsis thaliana]
 gi|57791672|gb|AAW56604.1| phytochrome D [Arabidopsis thaliana]
          Length = 1164

 Score = 1313 bits (3398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1098 (58%), Positives = 822/1098 (74%), Gaps = 55/1098 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPP--EGVPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ + P    VPE+QITAYLS+IQRGG  QPF
Sbjct: 60   IQQYTVDARLHAVFEQSGESGKSFDYSQSLKTAPYDSSVPEQQITAYLSRIQRGGYTQPF 119

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GC++A+EE TF IIGYSEN  EML L S+S    ED      IG D R+LF   S   L 
Sbjct: 120  GCLIAIEESTFTIIGYSENAREMLGLMSQSVPSIEDKSEVLTIGTDLRSLFKSSSYLLLE 179

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +REI+LLNPI +HSN+    KPFYAILHR+DVGI+IDLEP+++ DPALS+AGAVQS
Sbjct: 180  RAFVAREITLLNPIWIHSNNTG--KPFYAILHRVDVGILIDLEPARTEDPALSIAGAVQS 237

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AIS LQ+LP GDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEV++E +R+D
Sbjct: 238  QKLAVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVLAESKRND 297

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V+Q   L Q +CLV STLR+P
Sbjct: 298  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQSICLVGSTLRAP 357

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPFP 380
            HGCH QYMTNMGSIASL MAVIIN             ++SM+LWGLVVCHHTS R IPFP
Sbjct: 358  HGCHAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFP 417

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQ PSIMDL
Sbjct: 418  LRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVTQRPSIMDL 477

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKC+GAA  Y G+ + +GVTPT+SQ+ DI  WLL NH D TGLSTDSL +AGYP AA LG
Sbjct: 478  VKCNGAAFLYQGKYYSLGVTPTDSQINDIVEWLLANHSDSTGLSTDSLGDAGYPRAAALG 537

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
             AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +M+PRSSF+AFLEVVK
Sbjct: 538  DAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMNPRSSFQAFLEVVK 597

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVA 617
            +R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA
Sbjct: 598  SRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVA 657

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRLI+TAT PIF VD  G INGWNAK+AELTGL   +AMGKSL+ E++++E +  V+
Sbjct: 658  REMVRLIKTATVPIFAVDIDGCINGWNAKIAELTGLSVEDAMGKSLVRELIYKEYKETVD 717

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             L+  AL G+E KNVE+KL+ F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T  
Sbjct: 718  RLLSSALKGDEGKNVEVKLKTFGSELQGKAMFVVVNACSSKDYLNNIVGVCFVGQDVTGH 777

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--- 794
            K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TGW R EVIG   
Sbjct: 778  KIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWPRSEVIGKLL 837

Query: 795  ---------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       I GQ T+ FPF FF+R+G+F++  LT ++R   
Sbjct: 838  VREVFGSYCRLKGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRKGEFIQALLTLNKRVSV 897

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            +GK+IG FCF+QI  P+LQ ALE Q  ++ + +++ KELAYI Q +KNPL+G+RF + LL
Sbjct: 898  DGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKELAYIFQVIKNPLSGLRFTNSLL 957

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E + ++E+Q+Q LETS +CE+QI  I+  MD++ I++G+  L+  EF +GN+ +AVVSQV
Sbjct: 958  EDTDLNEDQKQLLETSVSCEKQISKIVGDMDVKSIDDGSFLLERTEFFIGNVTNAVVSQV 1017

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M+++R++NL L+ +IP E+K++++ GD+IRLQ VL++FL  +VR+AP  +G VE+ + P 
Sbjct: 1018 MLVVRERNLQLIRNIPTEVKSMAVYGDQIRLQQVLAEFLLSIVRYAPM-EGSVELHLCPT 1076

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
            L  + D    V ++FR+   GEG+P   ++DM++  ++WT+PEGLGL + RK+L +MNG 
Sbjct: 1077 LNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHS-SRWTSPEGLGLSVCRKILKLMNGG 1135

Query: 1068 VRYVRENSKCYFVIDLEL 1085
            V+Y+RE  + YF+I +EL
Sbjct: 1136 VQYIREFERSYFLIVIEL 1153


>gi|78643926|emb|CAJ21326.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1312 bits (3395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 647/1065 (60%), Positives = 793/1065 (74%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR+I YSEN  +ML
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L KA  +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+ GAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSITGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRGLTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+   IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSHTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCKLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNIKGDIIGAFCFLQIASPELQPSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +V +  S  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVIYTQSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|297800528|ref|XP_002868148.1| phytochrome D [Arabidopsis lyrata subsp. lyrata]
 gi|297313984|gb|EFH44407.1| phytochrome D [Arabidopsis lyrata subsp. lyrata]
          Length = 1165

 Score = 1311 bits (3392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/1142 (56%), Positives = 834/1142 (73%), Gaps = 62/1142 (5%)

Query: 2    GLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKG------KTIIDHYNADAGLLAEFEQS 55
            G + NR    S     ++          +P N G         I  Y  DA L A FEQS
Sbjct: 18   GHRVNRSRHTSAEQAQSSASKAQRSQNQQPQNHGAGTESTSKAIQQYTVDARLHAVFEQS 77

Query: 56   VASGKSFNYSRSVISPP--EGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYS 113
              SGKSF+YS+S+ + P    VPE+QITAYLS+IQRGG  QPFGC++AVEE TF IIGYS
Sbjct: 78   GESGKSFDYSQSLKTAPYDPSVPEQQITAYLSRIQRGGYTQPFGCLIAVEESTFTIIGYS 137

Query: 114  ENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVH 169
            EN  EML L S+S    ++      IG D R+LF   S   L +A  +REI+LLNPI +H
Sbjct: 138  ENAREMLGLMSQSVPSIKEISEVLTIGTDLRSLFKSSSIVLLERAFVAREITLLNPIWIH 197

Query: 170  SNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGG 229
            S  ++  KPFYAILHR+DVGI+IDLEP+++ DPALS+AGAVQSQKLAV AIS LQ+LPGG
Sbjct: 198  S--KNTGKPFYAILHRVDVGILIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGG 255

Query: 230  DIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQA 289
            DI LLCDTVV+ V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA
Sbjct: 256  DIKLLCDTVVDSVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQA 315

Query: 290  ARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASL 349
            +RFLFKQNRVRMI DC+A PV V+Q   L Q +CLV STLR+PHGCH QYMTNMGSIASL
Sbjct: 316  SRFLFKQNRVRMIVDCYASPVRVVQDDRLTQSICLVGSTLRAPHGCHAQYMTNMGSIASL 375

Query: 350  VMAVIINS-------------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQL 396
             MAVIIN              ++SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL
Sbjct: 376  AMAVIINGNEEDGNGGVNTGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQL 435

Query: 397  YMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWL 456
             MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQ PSIMDLVKC+GAA  Y G+ + 
Sbjct: 436  NMELQLALQVSEKRVLRMQTLLCDMLLRDSPTGIVTQRPSIMDLVKCNGAAFLYQGKYYS 495

Query: 457  VGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDF 516
            +GV PTE+Q+ DI  WLL NH D TGLSTDSL +AGYP AA LG AVCGMA A IT +DF
Sbjct: 496  LGVAPTEAQINDIVEWLLANHSDSTGLSTDSLGDAGYPRAAALGDAVCGMAVACITKRDF 555

Query: 517  LFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHS 576
            LFWFRSHT KE+KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK++  PWE +E++AIHS
Sbjct: 556  LFWFRSHTEKEIKWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSQCQPWETAEMDAIHS 615

Query: 577  LQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVACEMVRLIETATAPIFG 633
            LQ+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA EM+RLIETAT PIF 
Sbjct: 616  LQLILRDSFKESEAMDSKASAPGGVQPHGDDMAEQGMQEIGAVAREMIRLIETATVPIFA 675

Query: 634  VDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVE 693
            VD  G INGWNAK+AELTGL   EAMGKSL+ +++++E +   + L+  AL G+E KNVE
Sbjct: 676  VDIDGCINGWNAKIAELTGLSVEEAMGKSLVRDLIYKEYKETADRLLSCALKGDEGKNVE 735

Query: 694  LKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEA 753
            +KL+ F  + Q   V+++VNAC+S+DY NN+ GVCFVGQD+T  K +MDKFI +QGDY+A
Sbjct: 736  VKLKTFGPELQGKAVFVVVNACSSKDYLNNIVGVCFVGQDVTGHKFVMDKFINIQGDYKA 795

Query: 754  IIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------------- 794
            II S NPLIPPIFA+DEN CC EWN AMEK+TGW R EVIG                   
Sbjct: 796  IIHSPNPLIPPIFAADENTCCIEWNTAMEKLTGWPRSEVIGKLLVREVFGSCCRLKGPDA 855

Query: 795  -----------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVP 843
                       I GQ T+ FPF FF+R+G+F++  LT ++R   +GK+IG FCF+QI  P
Sbjct: 856  LTKFMIVLHNAIGGQETDKFPFPFFDREGKFIQALLTLNKRVSVDGKIIGAFCFLQIPSP 915

Query: 844  DLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETS 903
            +LQ ALE Q  ++ + +++ KELAYI Q +KNPL+G+RF + LLE+++++E+Q+Q LETS
Sbjct: 916  ELQQALEVQRRQESEYFSRRKELAYIFQFIKNPLSGLRFTNSLLEATNLNEDQKQLLETS 975

Query: 904  DACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIP 963
             +CE+QI  I+  MD++ IE+G+  L+  EF +G++++AVVSQVM ++R++N+ L+ +IP
Sbjct: 976  VSCEKQISKIVGEMDVKSIEDGSFLLERTEFFIGSVINAVVSQVMFVVRERNIQLIRNIP 1035

Query: 964  EEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
             EIK++++ GD+IRLQ VL++FL  +VR+AP  +G VE+ + P LK + D    + ++FR
Sbjct: 1036 AEIKSMAVYGDQIRLQQVLAEFLLSIVRYAPL-EGSVELHLCPVLKQMADGFSAIRLEFR 1094

Query: 1024 LTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDL 1083
            +   GEG+P   ++DM++  ++WT+PEGLGL + RK+L +MNGRV+Y+RE  + YF+I +
Sbjct: 1095 MACAGEGVPPEKVQDMFHS-SRWTSPEGLGLSVCRKILKLMNGRVQYIREFERSYFLIVI 1153

Query: 1084 EL 1085
            EL
Sbjct: 1154 EL 1155


>gi|57791674|gb|AAW56605.1| phytochrome D [Arabidopsis thaliana]
          Length = 1164

 Score = 1310 bits (3391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1098 (58%), Positives = 820/1098 (74%), Gaps = 55/1098 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPP--EGVPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ + P    VPE+QITAYLS+IQRGG  QPF
Sbjct: 60   IQQYTVDARLHAVFEQSGESGKSFDYSQSLKTAPYDSSVPEQQITAYLSRIQRGGYTQPF 119

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GC++AVEE TF IIGYSEN  EML L S+S    ED      IG D R+LF   S   L 
Sbjct: 120  GCLIAVEESTFTIIGYSENAREMLGLMSQSVPSIEDKSEVLTIGTDLRSLFKSSSYLLLE 179

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +REI+LLNPI +HSN+    KPFYAILHR+DV I+IDLEP+++ DPALS+AGAVQS
Sbjct: 180  RAFVAREITLLNPIWIHSNNTG--KPFYAILHRVDVEILIDLEPARTEDPALSIAGAVQS 237

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AIS LQ+LP GDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R+D
Sbjct: 238  QKLAVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRND 297

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V+Q   L Q +CLV STLR+P
Sbjct: 298  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQSICLVGSTLRAP 357

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPFP 380
            HGCH QYMTNMGSIASL MAVIIN             ++SM+LWGLVVCHHTS R IPFP
Sbjct: 358  HGCHAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFP 417

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVT  PSIMDL
Sbjct: 418  LRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVTXRPSIMDL 477

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKC+GAA  Y G+ + +GVTPT+SQ+ DI  WLL NH D TGLSTDSL +AGYP AA LG
Sbjct: 478  VKCNGAAFLYQGKYYSLGVTPTDSQINDIVEWLLANHSDSTGLSTDSLGDAGYPRAAALG 537

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
             AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +M+PRSSF+AFLEVVK
Sbjct: 538  DAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMNPRSSFQAFLEVVK 597

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVA 617
            +R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA
Sbjct: 598  SRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVA 657

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRLIETAT PIF VD  G INGWNAK+AELTGL   +AMGKSL+ E++++E +  V+
Sbjct: 658  REMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEDAMGKSLVRELIYKEYKETVD 717

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             L+  AL G+E KNVE+KL+ F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T  
Sbjct: 718  RLLSSALKGDEGKNVEVKLKTFGSELQGKAMFVVVNACSSKDYLNNIVGVCFVGQDVTGH 777

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--- 794
            K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TGW R EVIG   
Sbjct: 778  KIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWPRSEVIGKLL 837

Query: 795  ---------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       I GQ T+ FPF FF+R+G+F++  LT ++R   
Sbjct: 838  VREVFGSYCRLKGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRKGEFIQALLTLNKRVSV 897

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            +GK+IG FCF+QI  P+LQ ALE Q  ++ + +++ KELAYI Q +KNPL+G+RF + LL
Sbjct: 898  DGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKELAYIFQVIKNPLSGLRFTNSLL 957

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E + ++E+Q+Q LETS +CE+QI  I+  MD++ I++G+  L+  EF +GN+ +AVVSQV
Sbjct: 958  EDTDLNEDQKQLLETSVSCEKQISKIVGDMDVKSIDDGSFLLERTEFFIGNVTNAVVSQV 1017

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M+++R++NL L+ +IP E+K++++ GD+IRLQ VL++FL  +VR+AP  +G VE+ + P 
Sbjct: 1018 MLVVRERNLQLIRNIPTEVKSMAVYGDQIRLQQVLAEFLLSIVRYAPM-EGSVELHLCPT 1076

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
            L  + D    V ++FR+   GEG+P   ++DM++  ++WT+PEGLGL + RK+L +MNG 
Sbjct: 1077 LNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHS-SRWTSPEGLGLSVCRKILKLMNGG 1135

Query: 1068 VRYVRENSKCYFVIDLEL 1085
            V+Y+RE  + YF+I +EL
Sbjct: 1136 VQYIREFERSYFLIVIEL 1153


>gi|57791664|gb|AAW56600.1| phytochrome D [Arabidopsis thaliana]
          Length = 1164

 Score = 1310 bits (3391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1098 (58%), Positives = 819/1098 (74%), Gaps = 55/1098 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPP--EGVPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ + P    VPE+QITAYLS+IQRGG  QPF
Sbjct: 60   IQQYTVDARLHAVFEQSGESGKSFDYSQSLKTAPYDSSVPEQQITAYLSRIQRGGYTQPF 119

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GC++AVEE TF IIGYSEN  EML L S+S    ED      IG D R+LF   S   L 
Sbjct: 120  GCLIAVEESTFTIIGYSENAREMLGLMSQSVPSIEDKSEVLTIGTDLRSLFKSSSYLLLE 179

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +REI+LLNPI +HSN+    KPFYAILHR+DVGI+IDLEP+++ DPALS+AGAVQS
Sbjct: 180  RAFVAREITLLNPIWIHSNNTG--KPFYAILHRVDVGILIDLEPARTEDPALSIAGAVQS 237

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AIS LQ+LP GDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R+D
Sbjct: 238  QKLAVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRND 297

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V+Q   L Q +CLV STLR+P
Sbjct: 298  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQSICLVGSTLRAP 357

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPFP 380
            HGCH QYMTNMGSIASL MAVIIN             ++SM+LWGLVVCHHTS R IPFP
Sbjct: 358  HGCHAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFP 417

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQ PSIMDL
Sbjct: 418  LRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVTQRPSIMDL 477

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKC+GAA  Y G+ + +GVTPT+SQ+ DI  WLL NH D TGLSTDSL +AGYP AA LG
Sbjct: 478  VKCNGAAFLYQGKYYSLGVTPTDSQINDIVEWLLANHSDSTGLSTDSLGDAGYPRAAALG 537

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
             AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +M+PRSSF+AFLEVVK
Sbjct: 538  DAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMNPRSSFQAFLEVVK 597

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVA 617
            +R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA
Sbjct: 598  SRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVA 657

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRLI TAT PIF VD  G INGWNAK+AELTGL   +A GKSL+ E++ +E +  V+
Sbjct: 658  REMVRLIXTATVPIFAVDIDGCINGWNAKIAELTGLSVEDAXGKSLVRELISKEYKETVD 717

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             L+  AL G+E KNVE+KL+ F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T  
Sbjct: 718  RLLSSALKGDEGKNVEVKLKTFGSELQGKAMFVVVNACSSKDYLNNIVGVCFVGQDVTGH 777

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--- 794
            K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TGW R EVIG   
Sbjct: 778  KIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWPRSEVIGKLL 837

Query: 795  ---------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       I GQ T+ FPF FF+R+G+F++  LT ++R   
Sbjct: 838  VREVFGSYCRLKGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRKGEFIQALLTLNKRVSV 897

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            +GK+IG FCF+QI  P+LQ ALE Q  ++ + +++ KELAYI Q +KNPL+G+RF + LL
Sbjct: 898  DGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKELAYIFQVIKNPLSGLRFTNSLL 957

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E + ++E+Q+Q LETS +CE+QI  I+  MD++ I++G+  L+  EF +GN+ +AVVSQV
Sbjct: 958  EDTDLNEDQKQLLETSVSCEKQISKIVGDMDVKSIDDGSFLLERTEFFIGNVTNAVVSQV 1017

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M+++R++NL L+ +IP E+K++++ GD+IRLQ VL++FL  +VR+AP  +G VE+ + P 
Sbjct: 1018 MLVVRERNLQLIRNIPTEVKSMAVYGDQIRLQQVLAEFLLSIVRYAPM-EGSVELHLCPT 1076

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
            L  + D    V ++FR+   GEG+P   ++DM++  ++WT+PEGLGL + RK+L +MNG 
Sbjct: 1077 LNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHS-SRWTSPEGLGLSVCRKILKLMNGG 1135

Query: 1068 VRYVRENSKCYFVIDLEL 1085
            V+Y+RE  + YF+I +EL
Sbjct: 1136 VQYIREFERSYFLIVIEL 1153


>gi|57791648|gb|AAW56592.1| phytochrome D [Arabidopsis thaliana]
          Length = 1164

 Score = 1310 bits (3390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1098 (58%), Positives = 819/1098 (74%), Gaps = 55/1098 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPP--EGVPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ + P    VPE+QITAYLS+IQRGG  QPF
Sbjct: 60   IQQYTVDARLHAVFEQSGESGKSFDYSQSLKTAPYDSSVPEQQITAYLSRIQRGGYTQPF 119

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GC++AVEE TF IIGYSEN  EML L S+S    ED      IG D R+LF   S   L 
Sbjct: 120  GCLIAVEESTFTIIGYSENAREMLGLMSQSVPSIEDKSEVLTIGTDLRSLFKSSSYLLLE 179

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +REI+LLNPI +HSN+    KPFYAILHR+DVGI+IDLEP+++ DPALS+AGAVQS
Sbjct: 180  RAFVAREITLLNPIWIHSNNTG--KPFYAILHRVDVGILIDLEPARTEDPALSIAGAVQS 237

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AIS LQ+LP GDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R+D
Sbjct: 238  QKLAVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRND 297

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V+Q   L Q +CLV STLR+P
Sbjct: 298  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQSICLVGSTLRAP 357

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPFP 380
            HGCH QYMTNMGSIASL MAVIIN             ++SM+LWGLVVCHHTS R IPFP
Sbjct: 358  HGCHAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFP 417

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQ PSIMDL
Sbjct: 418  LRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVTQRPSIMDL 477

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKC+GAA  Y G+ + +GVTPT+SQ+ DI  WLL NH D TGLSTDSL + GYP AA LG
Sbjct: 478  VKCNGAAFLYQGKYYSLGVTPTDSQINDIVEWLLANHSDSTGLSTDSLGDGGYPRAAALG 537

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
             AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +M+PR SF+ FLEVVK
Sbjct: 538  DAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMNPRCSFQTFLEVVK 597

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVA 617
            +R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA
Sbjct: 598  SRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVA 657

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRLIETAT PIF VD  G INGWNAK+AELTGL   +AMGKSL+ E++++E +  V+
Sbjct: 658  REMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEDAMGKSLVRELIYKEYKETVD 717

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             L+  AL G+E KNVE+KL+ F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T  
Sbjct: 718  RLLSSALKGDEGKNVEVKLKTFGSELQGKAMFVVVNACSSKDYLNNIVGVCFVGQDVTGH 777

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--- 794
            K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TGW R EVIG   
Sbjct: 778  KIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWPRSEVIGKLL 837

Query: 795  ---------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       I GQ T+ FPF FF+R+G+F++  LT ++R   
Sbjct: 838  VREVFGSYCRLKGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRKGEFIQALLTLNKRVSV 897

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            +GK+IG FCF+QI  P+LQ ALE Q  ++ + +++ KELAYI Q +KNPL+G+RF + LL
Sbjct: 898  DGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKELAYIFQVIKNPLSGLRFTNSLL 957

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E + ++E+Q+Q LETS +CE+QI  I+  MD++ I++G+  L+  EF +GN+ +AVVSQV
Sbjct: 958  EDTDLNEDQKQLLETSVSCEKQISKIVGDMDVKSIDDGSFLLERTEFFIGNVTNAVVSQV 1017

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M+++R++NL L+ +IP E+K++++ GD+IRLQ VL++FL  +VR+AP  +G VE+ + P 
Sbjct: 1018 MLVVRERNLQLIRNIPTEVKSMAVYGDQIRLQQVLAEFLLSIVRYAPM-EGSVELHLCPT 1076

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
            L  + D    V ++FR+   GEG+P   ++DM++  ++WT+PEGLGL + RK+L +MNG 
Sbjct: 1077 LNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHS-SRWTSPEGLGLSVCRKILKLMNGG 1135

Query: 1068 VRYVRENSKCYFVIDLEL 1085
            V+Y+RE  + YF+I +EL
Sbjct: 1136 VQYIREFERSYFLIVIEL 1153


>gi|78643950|emb|CAJ21338.1| phytochrome B2 [Populus tremula]
          Length = 1144

 Score = 1310 bits (3390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 649/1065 (60%), Positives = 793/1065 (74%), Gaps = 48/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR I Y+EN   M 
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRGIAYNENAKNMR 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L K   +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGGDVRILFRPSSAVLLEKTFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGCINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN AMEK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCKLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R +    +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNI--NIIGAFCFLQIASPELQPSLKVQKQQEKK 894

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 895  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 954

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 955  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1014

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1015 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1059


>gi|57791666|gb|AAW56601.1| phytochrome D [Arabidopsis thaliana]
          Length = 1164

 Score = 1310 bits (3390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1098 (58%), Positives = 819/1098 (74%), Gaps = 55/1098 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPP--EGVPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ + P    VPE+QITAYLS+IQRGG  QPF
Sbjct: 60   IQQYTVDARLHAVFEQSGESGKSFDYSQSLKTAPYDSSVPEQQITAYLSRIQRGGYTQPF 119

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GC++AVEE TF IIGYSEN  EML L S+S    ED      IG D R+LF   S   L 
Sbjct: 120  GCLIAVEESTFTIIGYSENAREMLGLMSQSVPSIEDKSEVLTIGTDLRSLFKSSSYLLLE 179

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +REI+LLNPI +HSN+    KPFYAILHR+DVGI+IDLEP+++ DPALS+AGAVQS
Sbjct: 180  RAFVAREITLLNPIWIHSNNTG--KPFYAILHRVDVGILIDLEPARTEDPALSIAGAVQS 237

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AIS LQ+LP GDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R+D
Sbjct: 238  QKLAVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRND 297

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V+Q   L Q +CLV STLR+P
Sbjct: 298  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQSICLVGSTLRAP 357

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPFP 380
            HGCH QYMTNMGSIASL MAVIIN             ++SM+LWGLVVCHHTS R IPFP
Sbjct: 358  HGCHAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFP 417

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQ PSIMDL
Sbjct: 418  LRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVTQRPSIMDL 477

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKC+GAA  Y G+ + +GVTPT+SQ+ DI  WLL NH D TGLSTDSL +AGYP AA LG
Sbjct: 478  VKCNGAAFLYQGKYYSLGVTPTDSQINDIVEWLLANHSDSTGLSTDSLGDAGYPRAAALG 537

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
             AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +M+PRSSF+AFLEVVK
Sbjct: 538  DAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMNPRSSFQAFLEVVK 597

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVA 617
            +R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA
Sbjct: 598  SRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVA 657

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRLIETAT PIF VD  G INGWNAK+AELTGL   +A+GKSL+ E++ +E +  V+
Sbjct: 658  REMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEDALGKSLVRELISKEYKETVD 717

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             L+  AL G+E KNVE+KL+ F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T  
Sbjct: 718  RLLSSALKGDEGKNVEVKLKTFGSELQGKAMFVVVNACSSKDYLNNIVGVCFVGQDVTGH 777

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--- 794
            K++MDKFI +QGDY+AII S NPLI PIFA+DEN CC EWN AMEK+TGW R EVIG   
Sbjct: 778  KIVMDKFINIQGDYKAIIHSPNPLILPIFAADENTCCLEWNTAMEKLTGWPRSEVIGKLL 837

Query: 795  ---------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       I GQ T+ FPF FF+R+G+F++  LT ++R   
Sbjct: 838  VREVFGSYCRLKGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRKGEFIQALLTLNKRVSV 897

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            +GK+IG FCF+QI  P+LQ ALE Q  ++ + +++ KELAYI Q +KNPL+G+RF + LL
Sbjct: 898  DGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKELAYIFQVIKNPLSGLRFTNSLL 957

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E + ++E+Q+Q LETS +CE+QI  I+  MD++ I++G+  L+  EF +GN+ +AVVSQV
Sbjct: 958  EDTDLNEDQKQLLETSVSCEKQISKIVGDMDVKSIDDGSFLLERTEFFIGNVTNAVVSQV 1017

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M+++R++NL L+ +IP E+K++++ GD+IRLQ VL++FL  +VR+AP  +G VE+ + P 
Sbjct: 1018 MLVVRERNLQLIRNIPTEVKSMAVYGDQIRLQQVLAEFLLSIVRYAPM-EGSVELHLCPT 1076

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
            L  + D    V ++FR+   GEG+P   ++DM++  ++WT PEGLGL + RK+L +MNG 
Sbjct: 1077 LNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHS-SRWTXPEGLGLSVCRKILKLMNGG 1135

Query: 1068 VRYVRENSKCYFVIDLEL 1085
            V+Y+RE  + YF+I +EL
Sbjct: 1136 VQYIREFERSYFLIVIEL 1153


>gi|57791650|gb|AAW56593.1| phytochrome D [Arabidopsis thaliana]
          Length = 1164

 Score = 1310 bits (3389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1098 (58%), Positives = 819/1098 (74%), Gaps = 55/1098 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPP--EGVPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ + P    VPE+QITAYLS+IQRGG  QPF
Sbjct: 60   IQQYTVDARLHAVFEQSGESGKSFDYSQSLKTAPYDSSVPEQQITAYLSRIQRGGYTQPF 119

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GC++AVEE TF IIGYSEN  EML L S+S    ED      IG D R+LF   S   L 
Sbjct: 120  GCLIAVEESTFTIIGYSENAREMLGLMSQSVPSIEDKSEVLTIGTDLRSLFKSSSYLLLE 179

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +REI+LLNPI +HSN+    KPFYAILHR+DVGI+IDLEP+++ DPALS+AGAVQS
Sbjct: 180  RAFVAREITLLNPIWIHSNNTG--KPFYAILHRVDVGILIDLEPARTEDPALSIAGAVQS 237

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AIS LQ+LP GDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R+D
Sbjct: 238  QKLAVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRND 297

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V+Q   L Q +CLV STLR+P
Sbjct: 298  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQSICLVGSTLRAP 357

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPFP 380
            HGCH QYMTNMGSIASL MAVIIN             ++SM+LWGLVVCHHTS R IPFP
Sbjct: 358  HGCHAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFP 417

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQ PSIMDL
Sbjct: 418  LRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVTQRPSIMDL 477

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKC+GAA  Y G+ + +GVTPT+SQ+ DI  WLL NH D TGLSTDSL + GYP AA LG
Sbjct: 478  VKCNGAAFLYQGKYYSLGVTPTDSQINDIVEWLLANHSDSTGLSTDSLGDGGYPRAAALG 537

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
             AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +M+PRSSF+ FLEVVK
Sbjct: 538  DAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMNPRSSFQTFLEVVK 597

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVA 617
            +R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA
Sbjct: 598  SRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVA 657

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRLIETAT PIF VD  G INGWNAK+AELTGL   +AMGKSL+ E++++E +  V+
Sbjct: 658  REMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEDAMGKSLVRELIYKEYKETVD 717

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             L+  AL G+E KNVE+KL+ F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T  
Sbjct: 718  RLLSSALKGDEGKNVEVKLKTFGSELQGKAMFVVVNACSSKDYLNNIVGVCFVGQDVTGH 777

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--- 794
            K++MDKFI +QGDY+AII S NPLIPPI A+DEN CC EWN AMEK+TGW R EVIG   
Sbjct: 778  KIVMDKFINIQGDYKAIIHSPNPLIPPILAADENTCCLEWNTAMEKLTGWPRSEVIGKLL 837

Query: 795  ---------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       I GQ T+ FPF FF+R+G+F++  LT ++R   
Sbjct: 838  VREVFGSYCRLKGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRKGEFIQALLTLNKRVSV 897

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            +GK+IG FCF+QI  P+LQ ALE Q  ++ + +++ KELAYI Q +KNPL+G+RF + LL
Sbjct: 898  DGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKELAYIFQVIKNPLSGLRFTNSLL 957

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E + ++E+Q+Q LETS +CE+QI  I+  MD++ I++G+  L+  EF +GN+ +AVVSQV
Sbjct: 958  EDTDLNEDQKQLLETSVSCEKQISKIVGDMDVKSIDDGSFLLERTEFFIGNVTNAVVSQV 1017

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M+++R++NL L+ +IP E+K++++ GD+IRLQ VL++FL  +VR+AP  +G VE+ + P 
Sbjct: 1018 MLVVRERNLQLIRNIPTEVKSMAVYGDQIRLQQVLAEFLLSIVRYAPM-EGSVELHLCPT 1076

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
            L  + D    V ++FR+   GEG+P   ++DM++  ++WT+PEGLGL + RK+L +MNG 
Sbjct: 1077 LNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHS-SRWTSPEGLGLSVCRKILKLMNGG 1135

Query: 1068 VRYVRENSKCYFVIDLEL 1085
            V+Y+RE  + YF+I +EL
Sbjct: 1136 VQYIREFERSYFLIVIEL 1153


>gi|57791656|gb|AAW56596.1| phytochrome D [Arabidopsis thaliana]
 gi|57791658|gb|AAW56597.1| phytochrome D [Arabidopsis thaliana]
          Length = 1164

 Score = 1308 bits (3386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1098 (58%), Positives = 820/1098 (74%), Gaps = 55/1098 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPP--EGVPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ + P    VPE+QITAYLS+IQRGG  QPF
Sbjct: 60   IQQYTVDARLHAVFEQSGESGKSFDYSQSLKTAPYDSSVPEQQITAYLSRIQRGGYTQPF 119

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GC++AVEE TF IIGYSEN  EML L S+S    ED      IG D R+LF   S   L 
Sbjct: 120  GCLIAVEESTFTIIGYSENAREMLGLMSQSVPSIEDKSEVLTIGTDLRSLFKSSSYLLLE 179

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +REI+LLNPI +HSN+    KPFYAILHR+DVGI+IDLEP+++ DPALS+AGAVQS
Sbjct: 180  RAFVAREITLLNPIWIHSNNTG--KPFYAILHRVDVGILIDLEPARTEDPALSIAGAVQS 237

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AIS LQ+LP GDI LLCDTVVE V+ LTGYDRVM+Y F +D+HGEVV+E +R+D
Sbjct: 238  QKLAVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRVMVYKFREDEHGEVVAESKRND 297

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A  V V+Q   L Q +CLV STLR+P
Sbjct: 298  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASAVRVVQDDRLTQSICLVGSTLRAP 357

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPFP 380
            HGCH QYMTNMGSIASL MAVIIN             ++SM+LWGLVVCHHTS R IPFP
Sbjct: 358  HGCHAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFP 417

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQ PSIMDL
Sbjct: 418  LRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVTQRPSIMDL 477

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKC+GAA  Y G+ + +GVTPT+SQ+ DI  WLL NH D TGLSTDSL +AGYP AA LG
Sbjct: 478  VKCNGAAFLYQGKYYSLGVTPTDSQINDIVEWLLANHSDSTGLSTDSLGDAGYPRAAALG 537

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
             AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +M+PRSSF+AFLEVVK
Sbjct: 538  DAVCGMAIACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMNPRSSFQAFLEVVK 597

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVA 617
            +R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA
Sbjct: 598  SRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVA 657

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRLIETAT PIF VD  G INGWNAK+AELTGL   +A+GKSL+ E++++E +  V+
Sbjct: 658  REMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEDAIGKSLVRELIYKEYKETVD 717

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             L+  AL G+E KNVE+KL+ F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T  
Sbjct: 718  RLLSSALKGDEGKNVEVKLKTFGSELQGKAMFVVVNACSSKDYLNNIVGVCFVGQDVTGH 777

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--- 794
            K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TGW R EVIG   
Sbjct: 778  KIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWPRSEVIGKLL 837

Query: 795  ---------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       I GQ T+ FPF FF+R+G+F++  LT ++R   
Sbjct: 838  VREVFGSYCRLKGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRKGEFIQALLTLNKRVSV 897

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            +GK+IG FCF+QI  P+LQ ALE Q  ++ + +++ KELAYI Q +KNPL+G+RF + LL
Sbjct: 898  DGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKELAYIFQVIKNPLSGLRFTNSLL 957

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E + ++E+Q+Q LETS +CE+QI  I+  MD++ I++G+  L+  EF +GN+ +AVVSQV
Sbjct: 958  EDTDLNEDQKQLLETSVSCEKQISKIVGDMDVKSIDDGSFLLERTEFFIGNVTNAVVSQV 1017

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M+++R++NL L+ +IP E+K++++ GD+IRLQ VL++FL  +VR+AP  +G VE+ + P 
Sbjct: 1018 MLVVRERNLQLIRNIPTEVKSMAVYGDQIRLQQVLAEFLLSIVRYAPM-EGSVELHLCPT 1076

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
            L  + D    V ++FR+   GEG+P   ++DM++  ++WT+PEGLGL + RK+L +MNG 
Sbjct: 1077 LNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHS-SRWTSPEGLGLSVCRKILKLMNGG 1135

Query: 1068 VRYVRENSKCYFVIDLEL 1085
            V+Y+RE  + YF+I +EL
Sbjct: 1136 VQYIREFERSYFLIVIEL 1153


>gi|57791662|gb|AAW56599.1| phytochrome D [Arabidopsis thaliana]
          Length = 1164

 Score = 1308 bits (3386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1098 (58%), Positives = 820/1098 (74%), Gaps = 55/1098 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPP--EGVPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ + P    VPE+QITAYLS+IQRGG  QPF
Sbjct: 60   IQQYTVDARLHAVFEQSGESGKSFDYSQSLKTAPYDSSVPEQQITAYLSRIQRGGYTQPF 119

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GC++AVEE TF IIGYSEN  EML L S+S    ED      IG D R+LF   S   L 
Sbjct: 120  GCLIAVEESTFTIIGYSENAREMLGLMSQSVPSIEDKSEVLTIGTDLRSLFKSSSYLLLE 179

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +REI+LLNPI +HSN+    KPFYAILHR+DVGI+IDLEP+++ DPALS+AGAVQS
Sbjct: 180  RAFVAREITLLNPIWIHSNNTG--KPFYAILHRVDVGILIDLEPARTEDPALSIAGAVQS 237

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AIS LQ+LP GDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R+D
Sbjct: 238  QKLAVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRND 297

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V+Q   L Q +CLV STLR+P
Sbjct: 298  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQSICLVGSTLRAP 357

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPFP 380
            HGCH QYMTNM SIASL MAVIIN             ++SM+LWGLVVCHHTS R IPFP
Sbjct: 358  HGCHAQYMTNMCSIASLAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFP 417

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQ PSIMDL
Sbjct: 418  LRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVTQRPSIMDL 477

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKC+GAA  Y G+ + +G+TPT+SQ+ DI  WLL NH D TGLSTDSL +AGYP AA LG
Sbjct: 478  VKCNGAAFLYQGKYYSLGMTPTDSQINDIVEWLLANHSDSTGLSTDSLGDAGYPRAAALG 537

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
             AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +M+PRSSF+AFLEVVK
Sbjct: 538  DAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMNPRSSFQAFLEVVK 597

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVA 617
            +R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA
Sbjct: 598  SRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVXQGMQEIGAVA 657

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRLIETAT PIF VD  G INGWNAK+AELTGL   +AMGKSL+ E++++E +  V+
Sbjct: 658  REMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEDAMGKSLVRELIYKEYKETVD 717

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             L+  AL G+E KNVE+KL+ F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T  
Sbjct: 718  RLLSSALKGDEGKNVEVKLKTFGSELQGKAMFVVVNACSSKDYLNNIVGVCFVGQDVTGH 777

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--- 794
            K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TGW R EVIG   
Sbjct: 778  KIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWPRSEVIGKLL 837

Query: 795  ---------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       I GQ T+ F F FF+R+G+F++  LT ++R   
Sbjct: 838  VREVFGSYCRLKGPDALTKFMIVLHNAIGGQDTDKFSFPFFDRKGEFIQALLTLNKRVSV 897

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            +GK+IG FCF+QI  P+LQ ALE Q  ++ + +++ KELAYI Q +KNPL+G+RF + LL
Sbjct: 898  DGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKELAYIFQVIKNPLSGLRFTNSLL 957

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E + ++E+Q+Q LETS +CE+QI  I+  MD++ I++G+  L+  EF +GN+ +AVVSQV
Sbjct: 958  EDTDLNEDQKQLLETSVSCEKQISKIVGDMDVKSIDDGSFLLERTEFFIGNVTNAVVSQV 1017

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M+++R++NL L+ +IP E+K++++ GD+IRLQ VL++FL  +VR+AP  +G VE+ + P 
Sbjct: 1018 MLVVRERNLQLIRNIPTEVKSIAVYGDQIRLQQVLAEFLLSIVRYAPM-EGSVELHLCPT 1076

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
            L  + D    V ++FR+   GEG+P   ++DM++  ++WT+PEGLGL + RK+L +MNG 
Sbjct: 1077 LNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHS-SRWTSPEGLGLSVCRKILKLMNGG 1135

Query: 1068 VRYVRENSKCYFVIDLEL 1085
            V+Y+RE  + YF+I +EL
Sbjct: 1136 VQYIREFERSYFLIVIEL 1153


>gi|25986843|gb|AAM94952.1| phytochrome [Physcomitrella patens]
          Length = 1126

 Score = 1308 bits (3385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/1104 (57%), Positives = 811/1104 (73%), Gaps = 56/1104 (5%)

Query: 33   NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQR 89
            +K    +    ADA L A +E+S  SG SF+YS+SV    S  E VP   +TAYL ++QR
Sbjct: 16   SKHSVRVAQTTADAKLQAVYEESGDSGDSFDYSKSVHASKSTGENVPALAVTAYLQRMQR 75

Query: 90   GGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTP 145
            GGL+Q FGCML V+E +FR+I YSEN  EMLDL  ++       E+ G IG DARTLFTP
Sbjct: 76   GGLVQTFGCMLCVDESSFRVIAYSENAPEMLDLMPQAVPSVGQQEVLG-IGTDARTLFTP 134

Query: 146  PSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALS 205
             S A+L K A + ++++LNPI VH   RS  KPFYAILHRIDVG+VID EP +  D  +S
Sbjct: 135  SSAAALEKCAGAVDVTMLNPISVHC--RSSGKPFYAILHRIDVGLVIDFEPVRPNDAVVS 192

Query: 206  LAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVV 265
             AGA+QS KLA  AISRLQALPGGDIGLLCDTVVE+V++L+GYDRVM Y FH+D+HGEV+
Sbjct: 193  SAGALQSHKLAAKAISRLQALPGGDIGLLCDTVVEEVRQLSGYDRVMAYKFHEDEHGEVL 252

Query: 266  SEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLV 325
            +EIRRSDLEPYLG+H+PA DIPQA+RFLF +NRVRMI DC+A PV V+Q K+L+QP+ L 
Sbjct: 253  AEIRRSDLEPYLGLHYPATDIPQASRFLFMKNRVRMIGDCYAPPVKVVQDKDLRQPISLA 312

Query: 326  NSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-----------SMKLWGLVVCHHTSP 374
             STLR+PHGCH QYM NM SIASLVMAVI+N  D             KLWGLVVCHHTSP
Sbjct: 313  GSTLRAPHGCHAQYMGNMNSIASLVMAVIVNDPDEDPNSRGGQQRGRKLWGLVVCHHTSP 372

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            R + FPLR ACEFL+  F LQL ME+++A QL EK+ILRTQ LLCDMLLRDAP  IV+QS
Sbjct: 373  RTVSFPLRSACEFLMLVFGLQLNMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQS 432

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYP 494
            P+IMDLVKCDGAALYYG R WL+G+TP E Q+K+IA W L +H D TGLSTDSLA+AGYP
Sbjct: 433  PNIMDLVKCDGAALYYGKRFWLLGITPNEVQIKEIADWFLEHHQDSTGLSTDSLADAGYP 492

Query: 495  GAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKA 554
            GAA LG AVCGMA A+IT +DFLFWFRSHTAKE+KWGGAKH P+ KD+G KMHPRSSFKA
Sbjct: 493  GAAQLGDAVCGMAAAKITPRDFLFWFRSHTAKEIKWGGAKHDPDEKDDGRKMHPRSSFKA 552

Query: 555  FLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELS 614
            FLEVVK RS PWE  E++AIHSLQ++ R SFQ++ +++D+K   + + N  K+QG+DELS
Sbjct: 553  FLEVVKRRSLPWEDIEMDAIHSLQLISRGSFQDI-DDSDTKTMIHARLNDLKLQGMDELS 611

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            +VA EMVRLIETATAPI  VDSSG INGWNAKVAELTGLP  EAMG+SL+ +++ EES  
Sbjct: 612  TVANEMVRLIETATAPILAVDSSGFINGWNAKVAELTGLPVGEAMGRSLVKDLILEESID 671

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V+ L+  AL GEE++N+E++L+ F  QK+   V ++VNAC+SRD ++NV GVCFVGQD+
Sbjct: 672  VVQRLLYLALQGEEEQNIEIQLKTFGPQKEKGAVILIVNACSSRDVQDNVVGVCFVGQDV 731

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +K ++DKF R+QGDY+AI+Q+ NPLIPPIF +DE   CSEWN +MEK+TGW R EV+G
Sbjct: 732  TGQKQVLDKFTRIQGDYKAIVQNPNPLIPPIFGTDEYGYCSEWNPSMEKLTGWKREEVLG 791

Query: 795  ---------------------------------ITGQGTENFPFGFFNRQGQFVEVALTA 821
                                             + GQ T+ FPF FF+RQG++V+  LT 
Sbjct: 792  KLLVGEIFGMQLMCCRLKGQDAMTKFMIALNSAMDGQDTDRFPFSFFDRQGKYVDALLTV 851

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++RTDAEG + G FCF+     +L  AL  Q   +   +AK+KELAYIRQE+KNPL GI 
Sbjct: 852  NKRTDAEGSITGVFCFLHTTSVELLQALTVQRATEKVAFAKLKELAYIRQEIKNPLYGIM 911

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F   L+E + +SE+QRQ++ETS  CERQ+  ++D MDL  IE+G +EL + EF++G ++D
Sbjct: 912  FTRNLMEDTDLSEDQRQFVETSAVCERQLRKVLDDMDLESIEDGYLELDTNEFVMGTVMD 971

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
            AVVSQ M+  R+K L L+ + P EIK + L GD++RLQ VL+DFL   V+  PS  GWV 
Sbjct: 972  AVVSQGMITSREKGLQLIRETPREIKNMCLFGDQVRLQQVLADFLLNAVKFTPSSGGWVG 1031

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            IKV+P  K +      +H++FR+TH G G+P  L+ +M++ R +  T EGLGL + RKL+
Sbjct: 1032 IKVVPTKKRLGGGIHVMHLEFRVTHSGMGLPEELVHEMFD-RGRGMTQEGLGLSMCRKLV 1090

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
             +MNG V+Y+RE  K YF++++EL
Sbjct: 1091 KLMNGNVQYIRETGKSYFLVEVEL 1114


>gi|78643948|emb|CAJ21337.1| phytochrome B2 [Populus tremula]
          Length = 1144

 Score = 1308 bits (3385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 648/1065 (60%), Positives = 793/1065 (74%), Gaps = 48/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A +E +FR I Y+EN   M 
Sbjct: 61   SFDYSKSVRTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAADEQSFRGIAYNENAKNMR 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R LF P S   L K   +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGGDVRILFRPSSAVLLEKTFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGCINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R +    +IG FCF+QI  P+LQP+L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNI--NIIGAFCFLQIASPELQPSLKVQKQQEKK 894

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 895  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 954

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 955  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1014

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +FR
Sbjct: 1015 QQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1059


>gi|15234859|ref|NP_193360.1| phytochrome D [Arabidopsis thaliana]
 gi|12644264|sp|P42497.2|PHYD_ARATH RecName: Full=Phytochrome D
 gi|2244983|emb|CAB10404.1| phytochrome D [Arabidopsis thaliana]
 gi|7268374|emb|CAB78667.1| phytochrome D [Arabidopsis thaliana]
 gi|332658321|gb|AEE83721.1| phytochrome D [Arabidopsis thaliana]
          Length = 1164

 Score = 1307 bits (3382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1098 (58%), Positives = 820/1098 (74%), Gaps = 55/1098 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPP--EGVPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ + P    VPE+QITAYLS+IQRGG  QPF
Sbjct: 60   IQQYTVDARLHAVFEQSGESGKSFDYSQSLKTAPYDSSVPEQQITAYLSRIQRGGYTQPF 119

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GC++AVEE TF IIGYSEN  EML L S+S    ED      IG D R+LF   S   L 
Sbjct: 120  GCLIAVEESTFTIIGYSENAREMLGLMSQSVPSIEDKSEVLTIGTDLRSLFKSSSYLLLE 179

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +REI+LLNPI +HSN+    KPFYAILHR+DVGI+IDLEP+++ DPALS+AGAVQS
Sbjct: 180  RAFVAREITLLNPIWIHSNNTG--KPFYAILHRVDVGILIDLEPARTEDPALSIAGAVQS 237

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AIS LQ+LP GDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R+D
Sbjct: 238  QKLAVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRND 297

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V+Q   L Q +CLV STLR+P
Sbjct: 298  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQFICLVGSTLRAP 357

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPFP 380
            HGCH QYMTNMGSIASL MAVIIN             ++SM+LWGLVVCHHTS R IPFP
Sbjct: 358  HGCHAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFP 417

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQ PSIMDL
Sbjct: 418  LRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVTQRPSIMDL 477

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKC+GAA  Y G+ + +GVTPT+SQ+ DI  WL+ NH D TGLSTDSL +AGYP AA LG
Sbjct: 478  VKCNGAAFLYQGKYYPLGVTPTDSQINDIVEWLVANHSDSTGLSTDSLGDAGYPRAAALG 537

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
             AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +M+PRSSF+ FLEVVK
Sbjct: 538  DAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMNPRSSFQTFLEVVK 597

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVA 617
            +R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA
Sbjct: 598  SRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVA 657

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRLIETAT PIF VD  G INGWNAK+AELTGL   +AMGKSL+ E++++E +  V+
Sbjct: 658  REMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEDAMGKSLVRELIYKEYKETVD 717

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             L+  AL G+E KNVE+KL+ F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T  
Sbjct: 718  RLLSCALKGDEGKNVEVKLKTFGSELQGKAMFVVVNACSSKDYLNNIVGVCFVGQDVTGH 777

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--- 794
            K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TGW R EVIG   
Sbjct: 778  KIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWPRSEVIGKLL 837

Query: 795  ---------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       I GQ T+ FPF FF+R+G+F++  LT ++R   
Sbjct: 838  VREVFGSYCRLKGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRKGEFIQALLTLNKRVSI 897

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            +GK+IG FCF+QI  P+LQ ALE Q  ++ + +++ KELAYI Q +KNPL+G+RF + LL
Sbjct: 898  DGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKELAYIFQVIKNPLSGLRFTNSLL 957

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E   ++E+Q+Q LETS +CE+QI  I+  MD++ I++G+  L+  EF +GN+ +AVVSQV
Sbjct: 958  EDMDLNEDQKQLLETSVSCEKQISKIVGDMDVKSIDDGSFLLERTEFFIGNVTNAVVSQV 1017

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M+++R++NL L+ +IP E+K++++ GD+IRLQ VL++FL  +VR+AP  +G VE+ + P 
Sbjct: 1018 MLVVRERNLQLIRNIPTEVKSMAVYGDQIRLQQVLAEFLLSIVRYAPM-EGSVELHLCPT 1076

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
            L  + D    V ++FR+   GEG+P   ++DM++  ++WT+PEGLGL + RK+L +MNG 
Sbjct: 1077 LNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHS-SRWTSPEGLGLSVCRKILKLMNGG 1135

Query: 1068 VRYVRENSKCYFVIDLEL 1085
            V+Y+RE  + YF+I +EL
Sbjct: 1136 VQYIREFERSYFLIVIEL 1153


>gi|452814|emb|CAA54072.1| phytochrome D [Arabidopsis thaliana]
          Length = 1164

 Score = 1306 bits (3381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1098 (58%), Positives = 819/1098 (74%), Gaps = 55/1098 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPP--EGVPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ + P    VPE+QITAYLS+IQRGG  QPF
Sbjct: 60   IQQYTVDARLHAVFEQSGESGKSFDYSQSLKTAPYDSSVPEQQITAYLSRIQRGGYTQPF 119

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GC++AVEE TF IIGYSEN  EML L S+S    ED      IG D R+LF   S   L 
Sbjct: 120  GCLIAVEESTFTIIGYSENAREMLGLMSQSVPSIEDKSEVLTIGTDLRSLFKSSSYLLLE 179

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +REI+LLNPI +HSN+    KPFYAILHR+DVGI+IDLEP+++ DPALS+AGAVQS
Sbjct: 180  RAFVAREITLLNPIWIHSNNTG--KPFYAILHRVDVGILIDLEPARTEDPALSIAGAVQS 237

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AIS LQ+LP GDI LLCDTVVE V+ LTGYDRVM+Y FH+D+HGEVV+E +R+D
Sbjct: 238  QKLAVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVVAESKRND 297

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V+Q   L Q +CLV STLR+P
Sbjct: 298  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQFICLVGSTLRAP 357

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPFP 380
            HGCH QYMTNMGSIASL MAVIIN             ++SM+LWGLVVCHHTS R IPFP
Sbjct: 358  HGCHAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFP 417

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYACEF +QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQ PSIMDL
Sbjct: 418  LRYACEFFMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVTQRPSIMDL 477

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKC+GAA  Y G+ + +GVTPT+SQ+ DI  WL+ NH D TGLSTDSL +AGYP AA LG
Sbjct: 478  VKCNGAAFLYQGKYYPLGVTPTDSQINDIVEWLVANHSDSTGLSTDSLGDAGYPRAAALG 537

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
             AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +M+PRSSF+ FLEVVK
Sbjct: 538  DAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMNPRSSFQTFLEVVK 597

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVA 617
            +R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA
Sbjct: 598  SRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVA 657

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRLIETAT PIF VD  G INGWNAK+AELTGL   +AMGKSL+ E++++E +  V+
Sbjct: 658  REMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEDAMGKSLVRELIYKEYKETVD 717

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             L+  AL G+E KNVE+KL+ F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T  
Sbjct: 718  RLLSCALKGDEGKNVEVKLKTFGSELQGKAMFVVVNACSSKDYLNNIVGVCFVGQDVTGH 777

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--- 794
            K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TGW R EVIG   
Sbjct: 778  KIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWPRSEVIGKLL 837

Query: 795  ---------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       I GQ T+ FPF FF+R+G+F++  LT ++R   
Sbjct: 838  VREVFGSYCRLKGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRKGEFIQALLTLNKRVSI 897

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            +GK+IG FCF+QI  P+LQ ALE Q  ++ + +++ KELAYI Q +KNPL+G+RF + LL
Sbjct: 898  DGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKELAYIFQVIKNPLSGLRFTNSLL 957

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E   ++E+Q+Q LETS +CE+QI  I+  MD++ I++G+  L+  EF +GN+ +AVVSQV
Sbjct: 958  EDMDLNEDQKQLLETSVSCEKQISKIVGDMDVKSIDDGSFLLERTEFFIGNVTNAVVSQV 1017

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M+++R++NL L+ +IP E+K++++ GD+IRLQ VL++FL  +VR+AP  +G VE+ + P 
Sbjct: 1018 MLVVRERNLQLIRNIPTEVKSMAVYGDQIRLQQVLAEFLLSIVRYAPM-EGSVELHLCPT 1076

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
            L  + D    V ++FR+   GEG+P   ++DM++  ++WT+PEGLGL + RK+L +MNG 
Sbjct: 1077 LNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHS-SRWTSPEGLGLSVCRKILKLMNGG 1135

Query: 1068 VRYVRENSKCYFVIDLEL 1085
            V+Y+RE  + YF+I +EL
Sbjct: 1136 VQYIREFERSYFLIVIEL 1153


>gi|78643944|emb|CAJ21335.1| phytochrome B2 [Populus tremula]
          Length = 1146

 Score = 1306 bits (3379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1065 (60%), Positives = 790/1065 (74%), Gaps = 46/1065 (4%)

Query: 1    MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGK 60
            M  Q  R++         ++   +      P       I  Y  DA L A FEQS  +GK
Sbjct: 1    MASQSQRQSNQPAHNQAQSSGTSNMRQHHHPTESVSKAIAQYTVDAQLHAVFEQSGGTGK 60

Query: 61   SFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEML 120
            SF+YS+SV +P + VPEEQITAYLSKIQRGG IQPFGCM+A  E +FR I YSEN   ML
Sbjct: 61   SFDYSKSVKTPNQSVPEEQITAYLSKIQRGGHIQPFGCMIAANEQSFRGIAYSENAKNML 120

Query: 121  DLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIE 176
             L  +S    E  E+   +G D R  F P S   L K   +REI+LLNPI +HS +    
Sbjct: 121  GLTPQSVPSLEKQEIL-FVGGDVRIFFRPSSAVLLEKTFGAREITLLNPIWIHSKNSG-- 177

Query: 177  KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
            KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCD
Sbjct: 178  KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCD 237

Query: 237  TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
            TVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+P+ DIPQA+RFLFKQ
Sbjct: 238  TVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQ 297

Query: 297  NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
            NRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHGCH QYM NMGSIASL MAVII 
Sbjct: 298  NRVRMIVDCHAIPVSVIQDEGLMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIY 357

Query: 357  SKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
              D        SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 358  GNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLE 417

Query: 409  KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            K++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAALYY G+ + +GVTPTE+Q+KD
Sbjct: 418  KHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTEAQIKD 477

Query: 469  IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
            I  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A I  +DFLFWFRSHTAKEV
Sbjct: 478  IVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEV 537

Query: 529  KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
            KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ 
Sbjct: 538  KWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDA 597

Query: 589  EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            E  N   V  N Q    ++QG+DELSSVA EMVRLIETATAPIF VD  G INGWNAKVA
Sbjct: 598  EATNSKAVVHN-QLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVA 656

Query: 649  ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
            ELTGL   EAMGKSL+ ++V++E +  V+ LI RA+ GEEDKNVE+KLR F  + Q   V
Sbjct: 657  ELTGLSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAV 716

Query: 709  YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
            +++VNAC+S+DY +N+ GVCFVGQD+T +KV+MDK++ +QGDY+AI+ S NP IPPIFAS
Sbjct: 717  FVVVNACSSKDYMDNIVGVCFVGQDVTGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFAS 776

Query: 769  DENACCSEWNAAMEKVTGWMRHEVIG------------------------------ITGQ 798
            DEN CC EWN A+EK+TGW R EV+G                              I G 
Sbjct: 777  DENTCCLEWNTALEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGI 836

Query: 799  GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858
             T+  PF FF+R  + V+  LTA++R + +G +IG FCF+QI  P+LQ +L+ Q  ++  
Sbjct: 837  DTDKLPFSFFDRNEKNVQTLLTANKRVNIKGDIIGAFCFLQIASPELQQSLKVQKQQEKK 896

Query: 859  IYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMD 918
             +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+QI+ II  +D
Sbjct: 897  SFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDID 956

Query: 919  LRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRL 978
            L  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L++ GD+ R+
Sbjct: 957  LESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARI 1016

Query: 979  QLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFR 1023
            Q VL+DFL  +V +  S  GWVEI V P LK I D    VH +FR
Sbjct: 1017 QQVLADFLLNMVIYTQSSAGWVEIHVCPTLKQISDGHTLVHTEFR 1061


>gi|1172496|sp|P42499.1|PHYB_SOYBN RecName: Full=Phytochrome B
 gi|516103|gb|AAA34000.1| phytochrome B [Glycine max]
          Length = 1156

 Score = 1303 bits (3372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 654/1119 (58%), Positives = 814/1119 (72%), Gaps = 76/1119 (6%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            I  Y  D G+ A FEQS  SG+SFNYS S+    E VPE+QITAYL KIQRGG IQPFG 
Sbjct: 42   IAQYTED-GVHAVFEQSGESGRSFNYSESIRIASESVPEQQITAYLVKIQRGGFIQPFGS 100

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS---------EDFELNG--------------LI 135
            M+AV+EP+FRI+GYS+N  +ML +  +S           F L                 +
Sbjct: 101  MIAVDEPSFRILGYSDNARDMLGITPQSVPSLDDKNDAAFALGPQSVPSLDDKNDAAFAL 160

Query: 136  GIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLE 195
            G D R LFT  S   L KA ++REISL+NPI +HS  R+  KPFY ILHRIDVGIVIDLE
Sbjct: 161  GTDVRALFTHSSALLLEKAFSAREISLMNPIWIHS--RTSGKPFYGILHRIDVGIVIDLE 218

Query: 196  PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
            P+++ DPALS+AGAVQSQ+  V AIS+LQ+LP  D+ LLCDTVVE V++LTGYDRVM+Y 
Sbjct: 219  PARTEDPALSIAGAVQSQEALVRAISQLQSLPSADVKLLCDTVVESVRELTGYDRVMVYK 278

Query: 256  FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
            FH+D+HGEVVSE +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA  V V+Q 
Sbjct: 279  FHEDEHGEVVSESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASAVRVVQD 338

Query: 316  KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLV 367
            + L QPLCLV STL +PHGCH QYM NMGSIASLVMAVIIN  D        SM+LWGLV
Sbjct: 339  EALVQPLCLVGSTLGAPHGCHAQYMANMGSIASLVMAVIINGNDEEGVGGRSSMRLWGLV 398

Query: 368  VCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAP 427
            VCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A Q  EK +LRTQ LLCDMLLRD+P
Sbjct: 399  VCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSP 458

Query: 428  FSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDS 487
              IVTQSPSIMDLVKCDGAALY+ G  + +GVTPTE+Q++DI  WLL  HGD TGLSTDS
Sbjct: 459  TGIVTQSPSIMDLVKCDGAALYFQGNYYPLGVTPTEAQIRDIIEWLLAFHGDSTGLSTDS 518

Query: 488  LAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMH 547
            L +AGYPG   LG    G   A IT KDFLFWFRSHTAKE+KWGGAK     +  G +MH
Sbjct: 519  LGDAGYPGLPRLGMQFVGWQVAYITEKDFLFWFRSHTAKEIKWGGAKLILRTRMMGQRMH 578

Query: 548  PRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM 607
            P SSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ E  N SK   +   +  ++
Sbjct: 579  PLSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDAEHRN-SKAVVDPHVSEQEL 637

Query: 608  QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
            QGVDELSSVA EMVRLIETATAPIF VD  G +NGWNAKV+ELTGLP  EAMGKSL+ ++
Sbjct: 638  QGVDELSSVAREMVRLIETATAPIFAVDVDGHVNGWNAKVSELTGLPVEEAMGKSLVHDL 697

Query: 668  VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGV 727
            V +ES+  V  L+ R    EEDKNVE K+R F  + Q+   +++VNAC+S+ + NNV GV
Sbjct: 698  VFKESEETVNKLLSR----EEDKNVETKMRTFGKEHQNKAAFLVVNACSSKHFTNNVVGV 753

Query: 728  CFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEK---- 783
            CFVGQ++T +K++M KFI +QGDY+AI+ S NPLIPPIFASD+N CC EWN AMEK    
Sbjct: 754  CFVGQNVTGQKIVMHKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNTAMEKLDPS 813

Query: 784  ----------VTGWMR-HEVIG---------------------ITGQGTENFPFGFFNRQ 811
                      V G M   EV G                     + GQ T+ FPF F +R 
Sbjct: 814  NENVTVGGVDVIGKMLVGEVFGSCCQLKGSDSITKFMIVLHNALGGQDTDKFPFSFLDRH 873

Query: 812  GQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQ 871
            G++V+  LTA++R + EG++IG FCF+QI+ P+LQ AL+AQ  ++ +   ++KELAYI Q
Sbjct: 874  GKYVQTFLTANKRVNMEGQIIGAFCFLQIMSPELQQALKAQRQQEKEFLGRMKELAYICQ 933

Query: 872  EVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKS 931
             VK PL+GIRF + LLE++S++  Q+Q+LETS ACE+Q++ II  +DL  IE+G++EL+ 
Sbjct: 934  GVKKPLSGIRFTNSLLEATSLTNEQKQFLETSVACEKQMLKIIRDVDLESIEDGSLELEK 993

Query: 932  EEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVR 991
             EFLLGN+++AVVSQV++LLR++NL L+ DIPEEIK L++ GD++R+Q VLSDFL  +VR
Sbjct: 994  GEFLLGNVINAVVSQVILLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLSDFLLNIVR 1053

Query: 992  HAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEG 1051
            +APSPDGWVEI V P +K I D    +H +FR+  PGEG+P  LI+DM+N  ++W T EG
Sbjct: 1054 YAPSPDGWVEIHVRPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDMFNN-SRWGTQEG 1112

Query: 1052 LGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRGR 1090
            LGL +SRK+L +MNG V+Y+RE  +CYF + LEL    R
Sbjct: 1113 LGLSMSRKILKLMNGEVQYIREAERCYFYVLLELPVTRR 1151


>gi|400792|sp|Q01549.1|PHY1_SELMA RecName: Full=Phytochrome 1
 gi|22603|emb|CAA43698.1| phytochrome [Selaginella martensii]
          Length = 1134

 Score = 1303 bits (3372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/1102 (58%), Positives = 807/1102 (73%), Gaps = 61/1102 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            +    ADA L A +E+S  SG SF+YS+S+    S  E +P + +TAYL ++QRGGL+QP
Sbjct: 22   VAQTTADAKLHAVYEESGESGDSFDYSKSINATKSTGETIPAQAVTAYLQRMQRGGLVQP 81

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNG-----LIGIDARTLFTPPSGAS 150
            FGCMLAVEE +FR+I +S+N  EMLDL  +S     +G      IG DARTLFT  + A 
Sbjct: 82   FGCMLAVEEGSFRVIAFSDNAGEMLDLMPQSVPSLGSGQQDVLTIGTDARTLFTAAASAL 141

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPAL-SLAGA 209
               A A  ++S+LNPI V S + +  KPFYAI+HRIDVG+V+DLEP K+ D  + S AGA
Sbjct: 142  EKAAGAV-DLSMLNPIWVQSKTSA--KPFYAIVHRIDVGLVMDLEPVKASDTRVGSAAGA 198

Query: 210  VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
            +QS KLA  AISRLQ+LPGGDIGLLCDTVVE+V+ +TGYD VM Y FH+D+HGEVV+EIR
Sbjct: 199  LQSHKLAAKAISRLQSLPGGDIGLLCDTVVEEVRDVTGYDLVMAYKFHEDEHGEVVAEIR 258

Query: 270  RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            RSDLEPYLG+H+PA DIPQA+RFLF +NRVRMICDC A PV + Q KEL+QP+ L  STL
Sbjct: 259  RSDLEPYLGLHYPATDIPQASRFLFMKNRVRMICDCSAPPVKITQDKELRQPISLAGSTL 318

Query: 330  RSPHGCHLQYMTNMGSIASLVMAVIINSKD-------------SMKLWGLVVCHHTSPRY 376
            R+PHGCH QYM NMGS+ASLVMA+IIN  D               +LWGLVVCHHTSPR 
Sbjct: 319  RAPHGCHAQYMGNMGSVASLVMAMIINDNDEPSGGGGGGGQHKGRRLWGLVVCHHTSPRS 378

Query: 377  IPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPS 436
            +PF LR ACEFL+Q F LQL ME  VA  + EK+ILRTQ LLCDMLLRDAP  IV+QSP+
Sbjct: 379  VPF-LRSACEFLMQVFGLQLNMEAAVAAHVREKHILRTQTLLCDMLLRDAPIGIVSQSPN 437

Query: 437  IMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGA 496
            IMDLVKCDGAALYYG R WL+G+TP+E+Q+KDIA WLL +H D TGLSTDSLA+AGYPGA
Sbjct: 438  IMDLVKCDGAALYYGKRFWLLGITPSEAQIKDIAEWLLEHHKDSTGLSTDSLADAGYPGA 497

Query: 497  ALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFL 556
            A LG  VCGMA A+IT+KDFLFWFRSHTAKEVKWGGAKH P+ KD+G KMHPRSSFKAFL
Sbjct: 498  ASLGDEVCGMAAAKITAKDFLFWFRSHTAKEVKWGGAKHDPDDKDDGRKMHPRSSFKAFL 557

Query: 557  EVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSV 616
            EVVK RS PWE  E++AIHSLQ+++R SFQ++++ +D+K   + + N  K+QG+DELS+V
Sbjct: 558  EVVKRRSLPWEDVEMDAIHSLQLILRGSFQDIDD-SDTKTMIHARLNDLKLQGMDELSTV 616

Query: 617  ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
            A EMVRLIETATAPI  VDSSG INGWNAKVA++TGLP +EAMG+SL  E+V  ES   V
Sbjct: 617  ANEMVRLIETATAPILAVDSSGFINGWNAKVADVTGLPVTEAMGRSLAKELVLHESADMV 676

Query: 677  ENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736
            E L+  AL G+E++NVELKL+ F  QK    V ++VNAC SRD  +NV GVCFVGQD+T 
Sbjct: 677  ERLLYLALQGDEEQNVELKLKTFGGQKDKEAVILVVNACASRDVSDNVVGVCFVGQDVTG 736

Query: 737  EKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-- 794
            +KV+MDKF R+QGDY+AI+Q+ NPLIPPIF +DE   CSEWN AMEK++GW R EV+G  
Sbjct: 737  QKVVMDKFTRIQGDYKAIVQNPNPLIPPIFGADEFGYCSEWNPAMEKLSGWRREEVLGKM 796

Query: 795  -------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASR 823
                                             GQ TE FPF FF+RQG++VE  LTA++
Sbjct: 797  LVGEIFGIQMMYCRLKGQDAVTKFMIVLNSAADGQDTEKFPFAFFDRQGKYVEALLTATK 856

Query: 824  RTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFV 883
            R DAEG + G FCF+ I   +LQ AL  Q   +    +K+KELAYIRQE+KNPL GI F 
Sbjct: 857  RADAEGSITGVFCFLHIASAELQQALTVQRATEKVALSKLKELAYIRQEIKNPLYGIMFT 916

Query: 884  HKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAV 943
              L+E++ +SE+Q+QY+ET   CE+QI  I+D MDL  IE+G +EL + EF++G ++DAV
Sbjct: 917  RTLMETTDLSEDQKQYVETGAVCEKQIRKILDDMDLESIEDGYLELDTTEFMMGTVMDAV 976

Query: 944  VSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIK 1003
            +SQ M+  ++KNL L+ + P+EIKA+ L GD++RLQ VL+DFL   +R  PS + WV IK
Sbjct: 977  ISQGMITSKEKNLQLIRETPKEIKAMFLYGDQVRLQQVLADFLLNAIRFTPSSENWVGIK 1036

Query: 1004 VLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIM 1063
            V    K +      +H++FR+THPG G+P  L+++M++ R +  T EGLGL + RKL+ +
Sbjct: 1037 VATSRKRLGGVVHVMHLEFRITHPGVGLPEELVQEMFD-RGRGMTQEGLGLSMCRKLVKL 1095

Query: 1064 MNGRVRYVRENSKCYFVIDLEL 1085
            MNG V Y+RE  K YF++ LEL
Sbjct: 1096 MNGEVEYIREAGKNYFLVSLEL 1117


>gi|2499554|sp|Q39557.1|PHY2_CERPU RecName: Full=Phytochrome 2
 gi|1314837|gb|AAB67863.1| phytochrome photoreceptor CERPU;PHY0;2 [Ceratodon purpureus]
          Length = 1121

 Score = 1299 bits (3362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1117 (57%), Positives = 808/1117 (72%), Gaps = 49/1117 (4%)

Query: 19   TTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEE 78
            + P K+  +     +K    +    ADA L A +E S  SG SF+YS+SV    E VP  
Sbjct: 2    SAPKKTYSSTTSAKSKHSVRVAQTTADAALEAVYEMSGDSGDSFDYSKSVGQSAESVPAG 61

Query: 79   QITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS--EDFELNGL-I 135
             +TAYL ++QRGGLIQ FGCM+AVEEP F +I YSEN  E LDL  ++     E++ L I
Sbjct: 62   AVTAYLQRMQRGGLIQTFGCMVAVEEPNFCVIAYSENASEFLDLMPQAVPSMGEMDVLGI 121

Query: 136  GIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLE 195
            G D RTLFTP SGA+L KAAA+++ISLLNPI VH   R   KP YAI HRID+GIVID E
Sbjct: 122  GTDIRTLFTPSSGAALEKAAATQDISLLNPITVHC--RRSGKPLYAIAHRIDIGIVIDFE 179

Query: 196  PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
              K  D ++S AGA+QS KLA  AI+RLQALPGGDIGLLCDTVVE+V++LTGYDRVM Y 
Sbjct: 180  AVKMNDVSVSAAGALQSHKLAAKAITRLQALPGGDIGLLCDTVVEEVRELTGYDRVMAYK 239

Query: 256  FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
            FH+D+HGEVV+EIRR DLEPYLG+H+PA DIPQA+RFLF +NRVR+I DC A PV +IQ 
Sbjct: 240  FHEDEHGEVVAEIRRMDLEPYLGLHYPATDIPQASRFLFMKNRVRVIADCCASPVKLIQD 299

Query: 316  KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
             ++KQP+ L  STLR+PHGCH QYM NMGSIASLVMAVIIN  +           KLWGL
Sbjct: 300  PDIKQPVSLAGSTLRAPHGCHAQYMGNMGSIASLVMAVIINDNEEDSRGAIQRGRKLWGL 359

Query: 367  VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
            VVCHHTSPR +PFPLR ACEFL+Q F +QL ME+++A QL EK+ILRTQ LLCDMLLRDA
Sbjct: 360  VVCHHTSPRTVPFPLRSACEFLMQVFGMQLNMEVELAAQLREKHILRTQTLLCDMLLRDA 419

Query: 427  PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
            P  IV+Q+P+IMDLVKCDGAALYYG R WL+G TPTE+Q+KDIA WLL  H D TGLSTD
Sbjct: 420  PIGIVSQTPNIMDLVKCDGAALYYGKRFWLLGTTPTENQIKDIAEWLLEYHKDSTGLSTD 479

Query: 487  SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
            SLA+A YPGA LLG AVCGMA A+IT+KDFLFWFRSHTAKEVKWGGAKH P  KD+G KM
Sbjct: 480  SLADANYPGAHLLGDAVCGMAAAKITAKDFLFWFRSHTAKEVKWGGAKHDPAEKDDGRKM 539

Query: 547  HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
            HPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K
Sbjct: 540  HPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSFQDI-DDSDTKTMIHARLNDLK 598

Query: 607  MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
            + G+DELS VA EMVRLIETATAPI  VDS+G INGWNAK+A +TGLP SEAMG+SL+ +
Sbjct: 599  LHGMDELSVVANEMVRLIETATAPILAVDSTGMINGWNAKIAHVTGLPVSEAMGRSLVKD 658

Query: 667  VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
            +V +ES   VE L+  A  GEE++NVE+KL+ F  Q +   V ++VNAC+SRD  ++V G
Sbjct: 659  LVLDESVVVVERLLYLASQGEEEQNVEIKLKTFGTQTEKEAVILIVNACSSRDVSDSVVG 718

Query: 727  VCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTG 786
            VCFVGQD+T +K+ MDKF R+QGDY+ I+++ +PLIPPIF  DE   C EWN AME +TG
Sbjct: 719  VCFVGQDVTGQKMFMDKFTRIQGDYKTIVKNPHPLIPPIFGGDEYGYCFEWNPAMEALTG 778

Query: 787  WMRHEVIG---------------------------------ITGQGTENFPFGFFNRQGQ 813
            W   EV+G                                 + G  T+ F F F NR+G+
Sbjct: 779  WKHDEVVGKLLVGEIFGMEMMCCRLKSQDSMTKFMISLNNAMDGTNTDKFSFSFCNREGK 838

Query: 814  FVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEV 873
            FVE  L+ ++RT+A+G + G FCF+QI   +LQ AL  Q   +    AK+KELAYIRQE+
Sbjct: 839  FVEALLSTNKRTNADGVITGVFCFLQIASSELQQALTVQRATEKVAIAKLKELAYIRQEI 898

Query: 874  KNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEE 933
            KNPL GI F  +LLE + +S++Q+Q+L+TS  CE+Q+  +++ MDL  IE+G +EL + E
Sbjct: 899  KNPLCGITFTRQLLEDTDLSDDQKQFLDTSAVCEQQLQKVLNDMDLESIEDGYLELDTAE 958

Query: 934  FLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHA 993
            F +G ++DAV+SQ M   R+K L ++ + P EI  + L GD+IRLQ VLSDFL   +R  
Sbjct: 959  FEMGTVMDAVISQGMTTSREKGLQIIRETPREISTMRLFGDQIRLQQVLSDFLINAIRFT 1018

Query: 994  PSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLG 1053
            PS +GWV+IKV+P  K +      +H++FR++HPG G+P  L+ +MY+ R +  T EGLG
Sbjct: 1019 PSSEGWVKIKVVPTRKRLGGNVHVMHLEFRVSHPGGGLPDELVLEMYD-RAKGMTQEGLG 1077

Query: 1054 LKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRGR 1090
            L + RKL+ +MNG V+YVREN++CYFV+ +EL    R
Sbjct: 1078 LNMCRKLVRLMNGDVQYVRENAQCYFVVYVELPMAQR 1114


>gi|57791676|gb|AAW56606.1| phytochrome D [Arabidopsis halleri]
          Length = 1165

 Score = 1297 bits (3357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 638/1141 (55%), Positives = 829/1141 (72%), Gaps = 61/1141 (5%)

Query: 2    GLQGNRETTNSIGGGHNTTPFKSSDAKMKPVNKG------KTIIDHYNADAGLLAEFEQS 55
            G + NR    S     ++          +P N G         I  Y  DA L A FEQS
Sbjct: 18   GHRVNRSRHTSAEQAQSSASKAQRSQNQQPQNHGAGTESTSKAIQQYTVDARLHAVFEQS 77

Query: 56   VASGKSFNYSRSVISPP--EGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYS 113
              SGKSF+YS+S+ + P    VPE+QITAYLS+IQRGG  QPFGC++AVEE TF IIGYS
Sbjct: 78   GESGKSFDYSQSLKTAPYDPSVPEQQITAYLSRIQRGGYTQPFGCLIAVEESTFTIIGYS 137

Query: 114  ENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVH 169
            EN  EML L S+S    E+      IG D R+LF   S   L +A  +REI+LLNPI +H
Sbjct: 138  ENAREMLGLMSQSVPSIEEISEVLTIGTDLRSLFKSSSIVLLERAFVAREITLLNPIWIH 197

Query: 170  SNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGG 229
            S  ++  KPFYAILHR+DVGI+IDLEP+++ DPALS+AGAVQSQKLAV AIS LQ+LPGG
Sbjct: 198  S--KNTGKPFYAILHRVDVGILIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGG 255

Query: 230  DIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQA 289
            DI LLCDTVV+ V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA
Sbjct: 256  DIKLLCDTVVDSVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQA 315

Query: 290  ARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASL 349
            +RFLFKQNRVRMI DC+A PV V+Q   L Q +CLV STLR+PHGCH QYMTNMGSIASL
Sbjct: 316  SRFLFKQNRVRMIVDCYASPVRVVQDDRLTQSICLVGSTLRAPHGCHAQYMTNMGSIASL 375

Query: 350  VMAVIINS------------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLY 397
             MA+IIN             ++SM+LWGLVVCHHTS R IPFPLR ACEFL+QAF LQL 
Sbjct: 376  AMAIIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFPLRCACEFLMQAFGLQLN 435

Query: 398  MELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLV 457
            MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQ PSIMDLVKC+GAA  Y G+ + +
Sbjct: 436  MELQLALQVSEKRVLRMQTLLCDMLLRDSPTGIVTQRPSIMDLVKCNGAAFLYQGKYYSL 495

Query: 458  GVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFL 517
            GV PTE+Q+ DI  WLL NH D TGLSTDSL +AGYP AA LG AVCGMA A IT +DFL
Sbjct: 496  GVAPTEAQINDIVEWLLANHSDSTGLSTDSLGDAGYPRAAALGDAVCGMAVACITKRDFL 555

Query: 518  FWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSL 577
            FWFRSHT KE+KWGGAKHHPE KD+G +M PR+SF+AFLEVVK+R  PWE +E++AIHSL
Sbjct: 556  FWFRSHTEKEIKWGGAKHHPEDKDDGQRMXPRASFQAFLEVVKSRCQPWETAEMDAIHSL 615

Query: 578  QIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVACEMVRLIETATAPIFGV 634
            Q+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA EM+RLIETAT PIF V
Sbjct: 616  QLILRDSFKESEAMDSKASAPGGVQPHGDDMAEQGLQEIGTVAREMIRLIETATVPIFAV 675

Query: 635  DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVEL 694
            D  G INGWNAK+AELTGL   EAMGKSL+ +++++E +   + L+  AL G+E KNVE+
Sbjct: 676  DIDGCINGWNAKIAELTGLSVEEAMGKSLVRDLIYKEYEETADRLLSCALKGDEGKNVEV 735

Query: 695  KLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAI 754
            KL+ F  + Q   V+++VNAC+S+DY NN+ GVCFVGQD+T  K++MDKFI +QGDY+AI
Sbjct: 736  KLKTFAPELQGKAVFVVVNACSSKDYLNNIVGVCFVGQDVTGHKIVMDKFINIQGDYKAI 795

Query: 755  IQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-------------------- 794
            I S NPLIPPIFA+DEN CC EWN AMEK+TGW R EVIG                    
Sbjct: 796  IHSPNPLIPPIFAADENTCCIEWNTAMEKLTGWPRSEVIGKLLVREVFGSCCRLKGPDAL 855

Query: 795  ----------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPD 844
                      I GQ T+ FPF FF+R+G+F++  LT ++R   +GK+IG FCF+QI  P+
Sbjct: 856  TKFMIVLHNAIGGQETDKFPFPFFDREGKFIQALLTLNKRVSVDGKIIGAFCFLQIPSPE 915

Query: 845  LQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSD 904
            LQ ALE Q  ++ + +++ KELAYI Q +KNPL+G+RF + LLE++ ++E+Q+Q LETS 
Sbjct: 916  LQQALEVQRRQESEYFSRRKELAYIFQFIKNPLSGLRFTNSLLEATDLNEDQKQLLETSV 975

Query: 905  ACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPE 964
            +CE+QI  I+  MD+  I +G+  L+  EF +G++++AVVSQV+ ++R++N+ L+ +IP 
Sbjct: 976  SCEKQISKIVGEMDVISIGDGSFLLERTEFFIGSVINAVVSQVIFVVRERNIQLIRNIPA 1035

Query: 965  EIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRL 1024
            EIK++++ GD+IRLQ VL++FL  +VR+AP  +G VE+ + P LK + D    + ++FR+
Sbjct: 1036 EIKSMAVYGDQIRLQQVLAEFLLSIVRYAPL-EGSVELHLCPVLKQMADGFSAIRLEFRM 1094

Query: 1025 THPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLE 1084
               GEG+P   ++DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE  + YF+I +E
Sbjct: 1095 ACAGEGVPPEKVQDMFHS-SRWTSPEGLGLSVCRKILKLMNGGVQYIREFERSYFLIVIE 1153

Query: 1085 L 1085
            L
Sbjct: 1154 L 1154


>gi|168060714|ref|XP_001782339.1| phytochrome 2 [Physcomitrella patens subsp. patens]
 gi|139001623|dbj|BAF51708.1| phytochrome2 [Physcomitrella patens]
 gi|162666198|gb|EDQ52859.1| phytochrome 2 [Physcomitrella patens subsp. patens]
          Length = 1130

 Score = 1296 bits (3355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/1118 (57%), Positives = 814/1118 (72%), Gaps = 56/1118 (5%)

Query: 19   TTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGV 75
            +TP  +  +     +K    +    ADA L A +E+S  SG SF+YS+SV    S  E V
Sbjct: 2    STPKLAYSSGSSVKSKHSVRVAQTTADAKLQAVYEESGDSGDSFDYSKSVHASKSTGENV 61

Query: 76   PEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFEL 131
              + +TAYL ++QRGGL+Q FGCML VEE  FR+I +SEN  EMLDL  ++       E+
Sbjct: 62   SAQAVTAYLQRMQRGGLMQTFGCMLCVEESNFRVIAFSENAPEMLDLMPQAVPSVGQQEV 121

Query: 132  NGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIV 191
             G IG DARTLFTP S A+L K A + ++++LNPI VH   RS  KPFYAILHRIDVG+V
Sbjct: 122  LG-IGTDARTLFTPSSAAALEKCAGAVDVTMLNPISVHC--RSSGKPFYAILHRIDVGLV 178

Query: 192  IDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRV 251
            ID EP +S D  +S AG +QS KLA  AISRLQALPGGDIGLLCD VV++V++L+GYDRV
Sbjct: 179  IDFEPVRSNDAIVSSAGVLQSHKLAAKAISRLQALPGGDIGLLCDIVVQEVRELSGYDRV 238

Query: 252  MLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVM 311
            M Y FH+D+HGEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF +N+VRMI DC A PV 
Sbjct: 239  MAYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMIGDCFASPVK 298

Query: 312  VIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-----------S 360
            VIQ K+L+QP+ L  STLR+PHGCH QYM NM SIASLVMAVI+N  D            
Sbjct: 299  VIQDKDLRQPISLAGSTLRAPHGCHAQYMGNMNSIASLVMAVIVNDPDEDPNARGGQQRG 358

Query: 361  MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCD 420
             KLWGLVVCHHTSPR + FPLR ACEFL+Q F LQL ME+++A QL EK+ILRTQ LLCD
Sbjct: 359  RKLWGLVVCHHTSPRTVSFPLRSACEFLMQVFGLQLNMEVELAAQLREKHILRTQTLLCD 418

Query: 421  MLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDC 480
            MLLRDAP  IV+QSP+IMDLVKCDGAALYYG R WL+G+TP ++Q+K+IA WLL +H D 
Sbjct: 419  MLLRDAPIGIVSQSPNIMDLVKCDGAALYYGKRFWLLGITPNDAQIKEIADWLLEHHQDS 478

Query: 481  TGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHK 540
            TGLSTDSLA+AGYPGAA LG AVCGMA A+ITSKDFLFWFRSHTAKE+KWGGAKH P+ K
Sbjct: 479  TGLSTDSLADAGYPGAAQLGDAVCGMAAAKITSKDFLFWFRSHTAKEIKWGGAKHDPDEK 538

Query: 541  DNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNT 600
            D+G KMHPRSSFKAFL VVK RS PWE  E++AIHSLQ+++R SFQ++++ +D+K   + 
Sbjct: 539  DDGRKMHPRSSFKAFLVVVKRRSLPWEDIEMDAIHSLQLILRGSFQDIDD-SDTKTMIHA 597

Query: 601  QQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMG 660
            + N  K+QG+DELS+VA EMVRLIETATAPI  VDS G INGWNAKVAELTGLP  EAMG
Sbjct: 598  RLNDLKLQGMDELSTVANEMVRLIETATAPILAVDSGGFINGWNAKVAELTGLPVEEAMG 657

Query: 661  KSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDY 720
            +SL+ +++  ES   V+ L+  AL G+E++N+E++L+ F  QK+   V ++VNAC+SRD 
Sbjct: 658  RSLVKDLILNESIDVVQRLLHLALQGDEEQNIEIQLKTFGPQKEKGAVILIVNACSSRDV 717

Query: 721  KNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAA 780
            ++NV GVCFVGQD+T +K ++DKF R+QGDY+AI+Q+ NPLIPPIF +DE   CSEWN +
Sbjct: 718  QDNVVGVCFVGQDVTGQKQVLDKFTRIQGDYKAIVQNPNPLIPPIFGTDEYGYCSEWNPS 777

Query: 781  MEKVTGWMRHEVIG---------------------------------ITGQGTENFPFGF 807
            MEK+TGW R EVIG                                 + GQ T+ FPF F
Sbjct: 778  MEKLTGWKREEVIGKLLVGEIFGIQLMCCRLKSQDAMTKFMIVLNGAMDGQDTDRFPFSF 837

Query: 808  FNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELA 867
            F+RQG++V+  LT ++RTDAEG + G FCF+     +L  AL  Q   +   +AK+KELA
Sbjct: 838  FDRQGKYVDPLLTVNKRTDAEGSITGVFCFLHTTSVELLQALTVQRSTEKVAFAKLKELA 897

Query: 868  YIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNM 927
            YIRQE+KNPL GI F   L+E + +S +QRQ++ETS  CERQ+  I+D +DL  IE+G +
Sbjct: 898  YIRQEIKNPLYGIVFTRNLMEDTDLSVDQRQFVETSAVCERQLRKILDDLDLESIEDGYL 957

Query: 928  ELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLH 987
            EL + EF +G ++DAVVSQ M+  R+K L L+ + P EIK + L GD++RLQ VL+DFL 
Sbjct: 958  ELDTTEFEMGTVMDAVVSQGMITSREKGLQLIRETPSEIKNMCLYGDQVRLQQVLADFLL 1017

Query: 988  CVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWT 1047
              VR  PS +GWV IKV+P  K +      +H++FR+THPG G+P  L+ +M+ GR +  
Sbjct: 1018 NAVRFTPSSEGWVGIKVVPTKKRLGRGVHVMHLEFRVTHPGLGLPEELVHEMF-GRGRGM 1076

Query: 1048 TPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            T EGLGL + RKL+ +MNG V+Y+RE  K  F++++EL
Sbjct: 1077 TQEGLGLSMCRKLVKLMNGTVQYIRETGKSCFLVEVEL 1114


>gi|168017219|ref|XP_001761145.1| phytochrome 5a [Physcomitrella patens subsp. patens]
 gi|162687485|gb|EDQ73867.1| phytochrome 5a [Physcomitrella patens subsp. patens]
          Length = 1123

 Score = 1296 bits (3354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/1101 (57%), Positives = 809/1101 (73%), Gaps = 53/1101 (4%)

Query: 33   NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV----ISPPEGVPEEQITAYLSKIQ 88
            +K    +    ADA L A +E+S  SG SF+YS+SV     S  + VP + +TAYL ++Q
Sbjct: 16   SKHSVRVQQTTADAKLQAAYEESNDSGDSFDYSKSVGQAAKSTVQQVPAQAVTAYLQRMQ 75

Query: 89   RGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFT 144
            RGGL Q FGCMLAVEE TFR+I YSEN L+MLDL  ++       ++ G IG D+R+LFT
Sbjct: 76   RGGLTQTFGCMLAVEENTFRVIAYSENALDMLDLMPQAVPSVGQQDVLG-IGTDSRSLFT 134

Query: 145  PPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPAL 204
            P S A+L +A    ++S++NP+ VHS  RS  KPFYAILHRIDVGIV+D EP +  D  +
Sbjct: 135  PSSAAALERATQQSDLSMVNPVSVHS--RSSGKPFYAILHRIDVGIVMDFEPVRPNDVVV 192

Query: 205  SLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEV 264
            S AG + S KLA  AISRLQ+LPGGDIGLLCDTVVE+V++LTGYDRVM Y FH+D+HGEV
Sbjct: 193  SSAGTIHSHKLAAKAISRLQSLPGGDIGLLCDTVVEEVRELTGYDRVMAYKFHEDEHGEV 252

Query: 265  VSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCL 324
            ++EIRRSDLEPYLG+H+PA DIPQA+RFLF +NR RMI DC+A PV VIQ K+L+QPL L
Sbjct: 253  LAEIRRSDLEPYLGLHYPATDIPQASRFLFMKNRFRMIVDCYAPPVKVIQDKDLRQPLTL 312

Query: 325  VNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN-------SKDSMKLWGLVVCHHTSPRYI 377
              STLR+PHGCH QYM NMGSIAS+ MAV++N       S+ + +LWGLVVCHHTS R I
Sbjct: 313  AGSTLRAPHGCHAQYMGNMGSIASVTMAVVVNDQEDDGGSQKARRLWGLVVCHHTSARMI 372

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
             FPLR ACEFL+Q F LQL ME+++A QL EK+ILRTQ LLCDMLLRDAP  IV+QSP+I
Sbjct: 373  SFPLRSACEFLMQVFGLQLNMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQSPNI 432

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYYG R WL+G+TP+E Q+K+IA WLL  H D TGLSTDSLA+AGYPGA 
Sbjct: 433  MDLVKCDGAALYYGNRFWLLGITPSEQQIKEIADWLLECHKDSTGLSTDSLADAGYPGAN 492

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
            LLG AVCGMA ARIT KDFLFWFRSHTAKE+KWGGAKH  + +D+G KM PRSSF AFLE
Sbjct: 493  LLGDAVCGMAAARITPKDFLFWFRSHTAKEIKWGGAKHDADDRDDGRKMTPRSSFNAFLE 552

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVA 617
            VVK RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+QG+DELS+VA
Sbjct: 553  VVKRRSVPWEDIEMDAIHSLQLILRGSFQDI-DDSDTKTMIHARLNDLKLQGMDELSTVA 611

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRLIETAT PI  VDSSG INGWNAKVAELTGL   +AMG+SL+ +++ EES   V+
Sbjct: 612  NEMVRLIETATTPILAVDSSGFINGWNAKVAELTGLSVGDAMGRSLVKDLILEESVEDVQ 671

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             L+  AL GEE++NVE++LR F  QK    V ++VNAC+SRD + NV GVCFVGQD+T +
Sbjct: 672  RLLYLALQGEEEQNVEIRLRTFGPQKAKGAVILIVNACSSRDVQENVVGVCFVGQDVTGQ 731

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--- 794
            K+L DKF R+ GDY++I+Q+ NPLIPPIF SD+   C+EW+ +MEK+TGW R EV+G   
Sbjct: 732  KMLHDKFTRIHGDYKSIVQNPNPLIPPIFGSDDLGYCTEWSPSMEKLTGWKRDEVLGKML 791

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          + GQ T+ +PF FF+RQG+FVE  LTA++R
Sbjct: 792  VGEVFGMHLMCCRLKGQDAVTKFMIVLNNAMDGQDTDKYPFSFFDRQGKFVEALLTANKR 851

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            TDA+G + G FCF+ I  P+L  AL  Q   +   +AK+KELAYIRQE+KNPL GI F  
Sbjct: 852  TDADGYITGVFCFLHIASPELLQALTVQRATEKVAFAKLKELAYIRQEIKNPLYGIMFTR 911

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             L+E + +S++Q+Q+++TS  CERQ+  I+D MDL  IE+G +EL++ EF +G+++DAVV
Sbjct: 912  NLMEDTDLSDDQKQFMDTSAVCERQLRKILDDMDLESIEDGYLELETAEFEMGSMMDAVV 971

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQ MV  R+K L L+ + P EIK + L GD++RLQ VL+DFL   VR  PS +GWV IKV
Sbjct: 972  SQGMVTSREKGLQLIRETPREIKDMCLFGDQVRLQQVLADFLLNAVRFTPSSEGWVGIKV 1031

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
            +   + +      VH++FR+THPG G+P  LI +M++ R +  T EGLGL + RKL+ +M
Sbjct: 1032 VATKRRLGGGFHVVHLEFRVTHPGSGLPEELIHEMFD-RGRGMTQEGLGLNMCRKLVKLM 1090

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
            NG V+Y RE  K YF++ LEL
Sbjct: 1091 NGNVQYKRETGKSYFLVTLEL 1111


>gi|1674478|gb|AAB19058.1| phytochrome photoreceptor [Ceratodon purpureus]
          Length = 1121

 Score = 1294 bits (3349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 637/1117 (57%), Positives = 807/1117 (72%), Gaps = 49/1117 (4%)

Query: 19   TTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEE 78
            + P K+  +     +K    +    ADA L A +E S  SG SF+YS+SV    E VP  
Sbjct: 2    SAPKKTYSSTTSAKSKHSVRVAQTTADAALEAVYEMSGDSGDSFDYSKSVGQSAESVPAG 61

Query: 79   QITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS--EDFELNGL-I 135
             +TAYL ++QRGGLIQ FGCM+AVEEP F +I YSEN  E LDL  ++     E++ L I
Sbjct: 62   AVTAYLQRMQRGGLIQTFGCMVAVEEPNFCVIAYSENASEFLDLMPQAVPSMGEMDVLGI 121

Query: 136  GIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLE 195
            G D RTLFTP SGA+L KAAA+++ISLLNPI VH   R   KP YAI HRID+GIVID E
Sbjct: 122  GTDIRTLFTPSSGAALEKAAATQDISLLNPITVHC--RRSGKPLYAIAHRIDIGIVIDFE 179

Query: 196  PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
              K  D ++S AGA+QS KLA  AI+RLQALPGGDIGLLCDTVVE+V++LTGYDRVM Y 
Sbjct: 180  AVKMNDVSVSAAGALQSHKLAAKAITRLQALPGGDIGLLCDTVVEEVRELTGYDRVMAYK 239

Query: 256  FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
            FH+D+HGEVV+EIRR DLEPYLG+H+PA DIPQA+RFLF +NRVR+I DC A PV +IQ 
Sbjct: 240  FHEDEHGEVVAEIRRMDLEPYLGLHYPATDIPQASRFLFMKNRVRVIADCCASPVKLIQD 299

Query: 316  KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
             ++KQP+ L  STLR+PHGCH QYM NMGSIASLVMAVIIN  +           KLWGL
Sbjct: 300  PDIKQPVSLAGSTLRAPHGCHAQYMGNMGSIASLVMAVIINDNEEDSRGAIQRGRKLWGL 359

Query: 367  VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
            VVCHHTSPR +PFPLR ACEFL+Q F +QL ME+++A QL EK+ILRTQ LLCDMLLRDA
Sbjct: 360  VVCHHTSPRTVPFPLRSACEFLMQVFGMQLNMEVELAAQLREKHILRTQTLLCDMLLRDA 419

Query: 427  PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
            P  IV+Q+P+IMDLVKCDGAALYYG R WL+G TPTE+Q+KDIA WLL  H D TGLSTD
Sbjct: 420  PIGIVSQTPNIMDLVKCDGAALYYGKRFWLLGTTPTENQIKDIAEWLLEYHKDSTGLSTD 479

Query: 487  SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
            SLA+  YPGA LLG AVCGMA A+IT+KDFLFWFRSHTAKEVKWGGAKH P  KD+G KM
Sbjct: 480  SLADRNYPGAHLLGDAVCGMAAAKITAKDFLFWFRSHTAKEVKWGGAKHDPAEKDDGRKM 539

Query: 547  HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
            HPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K
Sbjct: 540  HPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSFQDI-DDSDTKTMIHARLNDLK 598

Query: 607  MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
            + G+DELS VA EMVRLIETATAPI  VDS+G INGWNAK+A +TGLP SEAMG+SL+ +
Sbjct: 599  LHGMDELSVVANEMVRLIETATAPILAVDSTGMINGWNAKIAHVTGLPVSEAMGRSLVKD 658

Query: 667  VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
            +V +ES   VE L+  A  GEE++NVE+KL+ F  Q +   V ++VNAC+SRD  ++V G
Sbjct: 659  LVLDESVVVVERLLYLASQGEEEQNVEIKLKTFGTQTEKEAVILIVNACSSRDVSDSVVG 718

Query: 727  VCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTG 786
            VCFVGQD+T +K+ MDKF R+QGDY+ I+++ +PLIPPIF  DE   C EWN AME +TG
Sbjct: 719  VCFVGQDVTGQKMFMDKFTRIQGDYKTIVKNPHPLIPPIFGGDEYGYCFEWNPAMEALTG 778

Query: 787  WMRHEVIG---------------------------------ITGQGTENFPFGFFNRQGQ 813
            W   E++G                                 + G  T+ F F F NR+G+
Sbjct: 779  WKHDELVGKLLVGEIFGMEMMCCRLKSQDSMTKFMISLNNAMDGTNTDKFSFSFCNREGK 838

Query: 814  FVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEV 873
            FVE  L+ ++RT+A+G + G FCF+QI   +LQ AL  Q   +    AK+KELAYIRQE+
Sbjct: 839  FVEALLSTNKRTNADGVITGVFCFLQIASSELQQALTVQRATEKVAIAKLKELAYIRQEI 898

Query: 874  KNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEE 933
            KNPL GI F  +LLE + +S++Q+Q+L+TS  CE+Q+  +++ MDL  IE+G +EL + E
Sbjct: 899  KNPLCGITFTRQLLEDTDLSDDQKQFLDTSAVCEQQLQKVLNDMDLESIEDGYLELDTAE 958

Query: 934  FLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHA 993
            F +G ++DAV+SQ M   R+K L ++ + P EI  + L GD+IRLQ VLSDFL   +R  
Sbjct: 959  FEMGTVMDAVISQGMTTSREKGLQIIRETPREISTMRLFGDQIRLQQVLSDFLINAIRFT 1018

Query: 994  PSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLG 1053
            PS +GWV+IKV+P  K +      +H++FR++HPG G+P  L+ +MY+ R +  T EGLG
Sbjct: 1019 PSSEGWVKIKVVPTRKRLGGNVHVMHLEFRVSHPGGGLPDELVLEMYD-RGKGMTQEGLG 1077

Query: 1054 LKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRGR 1090
            L + RKL+ +MNG V+YVREN++CYFV+ +EL    R
Sbjct: 1078 LNMCRKLVRLMNGDVQYVRENAQCYFVVYVELPMAQR 1114


>gi|25986847|gb|AAM94954.1| phytochrome [Physcomitrella patens]
          Length = 1130

 Score = 1291 bits (3340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1118 (57%), Positives = 812/1118 (72%), Gaps = 56/1118 (5%)

Query: 19   TTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGV 75
            +TP  +  +     +K    +    ADA L A +E+S  SG SF+YS+SV    S  E V
Sbjct: 2    STPKLAYSSGSSVKSKHSVRVAQTTADAKLQAVYEESGDSGDSFDYSKSVHASKSTGENV 61

Query: 76   PEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFEL 131
              + +TAYL ++QRGGL+Q FGCML VEE  FR+I +SEN  EMLDL  ++       E+
Sbjct: 62   SAQAVTAYLQRMQRGGLMQTFGCMLCVEESNFRVIAFSENAPEMLDLMPQAVPSVGQQEV 121

Query: 132  NGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIV 191
             G IG DARTLFTP S A+L K A + ++++LNPI VH   RS  KPFYAILHRIDVG+V
Sbjct: 122  LG-IGTDARTLFTPSSAAALEKCAGTVDVTMLNPISVHC--RSSGKPFYAILHRIDVGLV 178

Query: 192  IDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRV 251
            ID EP +S D  +S AG +QS KLA  AISRLQALPGGDIGLLCD VV++V++L+GYDRV
Sbjct: 179  IDFEPVRSNDAIVSSAGVLQSHKLAAKAISRLQALPGGDIGLLCDIVVQEVRELSGYDRV 238

Query: 252  MLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVM 311
            M Y FH+D+HGEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF +N+VRMI DC A PV 
Sbjct: 239  MAYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMIGDCFASPVK 298

Query: 312  VIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-----------S 360
            VIQ K+L+QP+ L  STLR+PHGCH QYM NM SIASLVMAVI+N  D            
Sbjct: 299  VIQDKDLRQPISLAGSTLRAPHGCHAQYMGNMNSIASLVMAVIVNDPDEDPNARGGQQRG 358

Query: 361  MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCD 420
             KLWGLVVCHHTSPR + FPLR ACEFL+Q F LQL ME+++A QL EK+ILRTQ LLCD
Sbjct: 359  RKLWGLVVCHHTSPRTVSFPLRSACEFLMQVFGLQLNMEVELAAQLREKHILRTQTLLCD 418

Query: 421  MLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDC 480
            MLLRDAP  IV+QSP+IMDLVKCDGAAL+YG R WL+G+TP ++Q+K+IA WLL +H D 
Sbjct: 419  MLLRDAPIGIVSQSPNIMDLVKCDGAALHYGKRFWLLGITPNDAQIKEIADWLLEHHQDS 478

Query: 481  TGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHK 540
            TGLSTDSLA+AGYPGAA LG AVCGMA A+ITSKDFLFWFRSHTAKE+KWGGAKH P+ K
Sbjct: 479  TGLSTDSLADAGYPGAAQLGDAVCGMAAAKITSKDFLFWFRSHTAKEIKWGGAKHDPDEK 538

Query: 541  DNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNT 600
            D+G KMHPRSSFKAFL VVK RS PWE  E++AIHSLQ+++R SFQ++++ +D+K   + 
Sbjct: 539  DDGRKMHPRSSFKAFLVVVKRRSLPWEDIEMDAIHSLQLILRGSFQDIDD-SDTKTMIHA 597

Query: 601  QQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMG 660
            + N  K+Q +DELS+VA EMVRLIETATAPI  VDS G INGWNAKVAELTGLP  EAMG
Sbjct: 598  RLNDLKLQDMDELSTVANEMVRLIETATAPILAVDSGGFINGWNAKVAELTGLPVEEAMG 657

Query: 661  KSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDY 720
            +SL+ +++  ES   V+ L+  AL G+E++N+E++L+ F  QK+   V ++VNAC+SRD 
Sbjct: 658  RSLVKDLILNESIDVVQRLLHLALQGDEEQNIEIQLKTFGPQKEKGAVILIVNACSSRDV 717

Query: 721  KNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAA 780
            ++NV GVCFVGQD+T +K ++DKF R+QGDY+AI+Q+ NPLIPPIF +DE   CSEWN +
Sbjct: 718  QDNVVGVCFVGQDVTGQKQVLDKFTRIQGDYKAIVQNPNPLIPPIFGTDEYGYCSEWNPS 777

Query: 781  MEKVTGWMRHEVIG---------------------------------ITGQGTENFPFGF 807
            MEK+TGW R EVIG                                 + GQ T+ FPF F
Sbjct: 778  MEKLTGWKREEVIGKLLVGEIFGIQLMCCRLKSQDAMTKFMIVLNGAMDGQDTDRFPFSF 837

Query: 808  FNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELA 867
            F+RQG++V+  LT ++RTDAEG + G FCF+     +L  AL  Q   +   +AK+KELA
Sbjct: 838  FDRQGKYVDPLLTVNKRTDAEGSITGVFCFLHTTSVELLQALTVQRSTEKVAFAKLKELA 897

Query: 868  YIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNM 927
            YIRQE+KNPL GI F   L+E + +S +QRQ +ETS  CERQ+  I+D +DL  IE+G +
Sbjct: 898  YIRQEIKNPLYGIVFTRNLMEDTDLSVDQRQLVETSAVCERQLRKILDDLDLESIEDGYL 957

Query: 928  ELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLH 987
            EL + EF +G ++DAVVSQ M+  R+K L L+ + P EIK + L GD++RLQ VL+DFL 
Sbjct: 958  ELDTTEFEMGTVMDAVVSQGMITSREKGLQLIRETPSEIKNMCLYGDQVRLQQVLADFLL 1017

Query: 988  CVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWT 1047
              VR  PS +GWV IKV+P  K +      +HV+FR+THPG G+P  L+ +M+ GR +  
Sbjct: 1018 NAVRFTPSSEGWVGIKVVPTKKRLGRGVHVMHVEFRVTHPGLGLPEELVHEMF-GRGRGM 1076

Query: 1048 TPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            T EGLGL + RKL+ +MNG V+Y+RE  K  F++++EL
Sbjct: 1077 TQEGLGLSMCRKLVKLMNGTVQYIRETGKSCFLVEVEL 1114


>gi|168051425|ref|XP_001778155.1| phytochrome 1 [Physcomitrella patens subsp. patens]
 gi|139001617|dbj|BAF51707.1| phytochrome1 [Physcomitrella patens]
 gi|162670477|gb|EDQ57045.1| phytochrome 1 [Physcomitrella patens subsp. patens]
          Length = 1123

 Score = 1286 bits (3329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 635/1098 (57%), Positives = 800/1098 (72%), Gaps = 50/1098 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVI-SPPEGVPEEQITAYLSKIQRGGLIQPFG 97
            +    ADA L A FE+S  SG SF+YS+SV  S  E +P   +TAYL ++QRGGL Q FG
Sbjct: 23   VAQTTADAALQAVFEKSGDSGDSFDYSKSVSKSTAESLPSGAVTAYLQRMQRGGLTQSFG 82

Query: 98   CMLAVEEPTFRIIGYSENCLEMLDLRSRS--EDFELNGL-IGIDARTLFTPPSGASLAKA 154
            CM+AVE   FR+I YSEN  E+LDL  ++     E++ L IG D RTLFT  S ASL KA
Sbjct: 83   CMIAVEGTGFRVIAYSENAPEILDLVPQAVPSVGEMDTLRIGTDVRTLFTASSVASLEKA 142

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
            A ++E+SLLNPI V  N R   K  YAI HRID+GIVID E  K+ D  +S AGA+QS K
Sbjct: 143  AEAQEMSLLNPITV--NCRRSGKQLYAIAHRIDIGIVIDFEAVKTDDHLVSAAGALQSHK 200

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AI+RLQALPGGDIGLLCDTVVE+V++LTGYDRVM Y FH+D+HGEVV+EIRR+DLE
Sbjct: 201  LAAKAITRLQALPGGDIGLLCDTVVEEVRELTGYDRVMAYRFHEDEHGEVVAEIRRADLE 260

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PYLG+H+P  DIPQA+RFLF +N+VR+I DC A PV VIQ   L+QP+ L  STLRSPHG
Sbjct: 261  PYLGLHYPGTDIPQASRFLFMKNKVRIIADCSAPPVKVIQDPTLRQPVSLAGSTLRSPHG 320

Query: 335  CHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGLVVCHHTSPRYIPFPLRYAC 385
            CH QYM NMGSIASLVMAVIIN  +           KLWGLVVCHHTSPR +PFPLR AC
Sbjct: 321  CHAQYMGNMGSIASLVMAVIINDNEEDSHGSVQRGRKLWGLVVCHHTSPRTVPFPLRSAC 380

Query: 386  EFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDG 445
             FL+Q F LQL ME+++A QL EK+ILRTQ LLCDMLLRDAP  IV+Q P+IMDLVKCDG
Sbjct: 381  GFLMQVFGLQLNMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQIPNIMDLVKCDG 440

Query: 446  AALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCG 505
            AALYYG R WL+G TPTESQ+KDIA WLL  H D TGLSTDSLA+A YP A LLG AVCG
Sbjct: 441  AALYYGKRFWLLGTTPTESQIKDIAEWLLEYHKDSTGLSTDSLADANYPAAHLLGDAVCG 500

Query: 506  MATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFP 565
            MA A+IT+KDFLFWFRSHTAKE+KWGGAKH P  KD+G KMHPRSSFKAFLEVVK RS P
Sbjct: 501  MAAAKITAKDFLFWFRSHTAKEIKWGGAKHDPGEKDDGRKMHPRSSFKAFLEVVKRRSLP 560

Query: 566  WEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
            WE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+  +DELS VA EMVRLIE
Sbjct: 561  WEDVEMDAIHSLQLILRGSFQDI-DDSDTKTMIHARLNDLKLHDMDELSVVANEMVRLIE 619

Query: 626  TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
            TATAPI  VDS+G INGWNAK+A++TGLP SEAMG+SL+ ++V +ES   VE L+  AL 
Sbjct: 620  TATAPILAVDSNGMINGWNAKIAQVTGLPVSEAMGRSLVKDLVTDESVAVVERLLYLALR 679

Query: 686  GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
            GEE++NVE+KL+ F  Q +  VV ++VNAC+SRD   NV GVCFVGQD+T +K+ MDKF 
Sbjct: 680  GEEEQNVEIKLKTFGTQTEKGVVILIVNACSSRDVSENVVGVCFVGQDVTGQKMFMDKFT 739

Query: 746  RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
            R+QGDY+ I+Q+ +PLIPPIF +DE   C EWN AME +TGW + EV+G           
Sbjct: 740  RIQGDYKTIVQNPHPLIPPIFGADEFGYCFEWNPAMEGLTGWKKDEVVGKLLVGEIFGMQ 799

Query: 795  ----------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVI 832
                                  + GQ T+ F F FF+R+G++V+V L+ ++RT+A+G + 
Sbjct: 800  MMCCRMKSQDAMTKFMIALNTAMDGQSTDKFTFSFFDREGKYVDVLLSTNKRTNADGVIT 859

Query: 833  GCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSI 892
            G FCF+QI   +LQ AL+ Q   +    AK+KELAYIRQE+KNPL GI F  +LLE + +
Sbjct: 860  GVFCFLQIASSELQQALKVQRATEKVAVAKLKELAYIRQEIKNPLCGITFTRQLLEDTDL 919

Query: 893  SENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLR 952
            S++Q+Q+L+TS  CE+Q+  +++ MDL  IE+G +EL + EF +G +++AV+SQ M   R
Sbjct: 920  SDDQQQFLDTSAVCEQQLQKVLNDMDLESIEDGYLELDTAEFEMGTVMNAVISQGMTTSR 979

Query: 953  DKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIK 1012
            +K L +  + P EI  + L GD+IRLQ VLSDFL   VR  PSP+GWV+IKV+P  K + 
Sbjct: 980  EKGLQIFRETPREINTMRLLGDQIRLQQVLSDFLLNTVRFTPSPEGWVKIKVVPTRKRLG 1039

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVR 1072
             +   VH++FR++HPG G+P  L+ +MY+ R +  T EGLGL + RKL+ +MNG V YVR
Sbjct: 1040 GSVHVVHLEFRVSHPGAGLPEELVLEMYD-RGKGMTQEGLGLNMCRKLVRLMNGDVHYVR 1098

Query: 1073 ENSKCYFVIDLELKTRGR 1090
            E  +CYFV+++EL    R
Sbjct: 1099 EAMQCYFVVNVELPMAQR 1116


>gi|168003331|ref|XP_001754366.1| phytochrome 5c [Physcomitrella patens subsp. patens]
 gi|162694468|gb|EDQ80816.1| phytochrome 5c [Physcomitrella patens subsp. patens]
          Length = 1124

 Score = 1281 bits (3316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1101 (56%), Positives = 804/1101 (73%), Gaps = 54/1101 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEG----VPEEQITAYLSKIQRGGLIQ 94
            +    ADA L A +E+S  SG +FNYS+SV    +     VP + +++YL ++QRGGL Q
Sbjct: 22   VQQTTADAKLQAVYEESNDSGDAFNYSKSVGQAAKATVQQVPAQAVSSYLQRMQRGGLTQ 81

Query: 95   PFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGAS 150
             FGCMLAVEE TFR+I YSEN  EMLDL   +       ++ G IG DAR+LFTP S ++
Sbjct: 82   TFGCMLAVEESTFRVIAYSENAPEMLDLVPHAVPSVGQQDVLG-IGADARSLFTPSSASA 140

Query: 151  LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
            L +AA++ ++S++NPI VHS  RS  KPFYAI+HRIDVG+VID EP +  D  +S AGA+
Sbjct: 141  LERAASTSDLSMVNPISVHS--RSSGKPFYAIVHRIDVGVVIDFEPVRPNDVIISTAGAL 198

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
             S KLA  A++RLQ+LPGGDIGLLCD VVE+V++LTGYDRVM Y FHDD+HGEV++EIRR
Sbjct: 199  HSHKLAAKAVARLQSLPGGDIGLLCDAVVEEVRELTGYDRVMAYKFHDDEHGEVLAEIRR 258

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            SDLE YLG+H+P+ DIPQA+RFLF +NRVRMI DC A PV VIQ K+L+QP+ L  STLR
Sbjct: 259  SDLESYLGLHYPSTDIPQASRFLFMKNRVRMIADCCAPPVKVIQDKDLRQPITLAGSTLR 318

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLR 382
            +PHGCH QYM NMGS+AS+ +AVI+N ++          +LWGLVVCHHTS R I FPLR
Sbjct: 319  APHGCHAQYMGNMGSVASITLAVIVNDQEEDFGVQQKGRRLWGLVVCHHTSARTISFPLR 378

Query: 383  YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
             ACEFL+Q F LQL ME+++  Q+ EK+ILRTQ LLCDMLLRDAP  IV+QSP+IMDLVK
Sbjct: 379  SACEFLMQVFGLQLNMEVELQAQVKEKHILRTQTLLCDMLLRDAPIGIVSQSPNIMDLVK 438

Query: 443  CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
            CDGAALYYG R WL+G TPTE Q+ +IA WLL  H D TGLSTDSLA+AGYPGA LLG A
Sbjct: 439  CDGAALYYGKRFWLLGTTPTEQQITEIADWLLEYHKDSTGLSTDSLADAGYPGANLLGDA 498

Query: 503  VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
            VCGMA ARIT KDFLFWFRSHTAKE+KWGGAKH  + KD+G KM PRSSF AFLEVVK R
Sbjct: 499  VCGMAAARITPKDFLFWFRSHTAKEIKWGGAKHDADEKDDGRKMAPRSSFNAFLEVVKRR 558

Query: 563  SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVR 622
            S PWE  E++AIHSLQ+++R SFQ++++ +D K   + + +  K+QG+DELS+VA EMVR
Sbjct: 559  SVPWEDIEMDAIHSLQLILRGSFQDIDD-SDGKTMIHARLHDLKLQGMDELSTVANEMVR 617

Query: 623  LIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICR 682
            LIETAT PI  VDSSG INGWNAKVAELTGLP  +AMG+SL+ +++ EES  AVE L+  
Sbjct: 618  LIETATVPILAVDSSGFINGWNAKVAELTGLPVGDAMGRSLVKDLILEESVEAVERLLYL 677

Query: 683  ALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742
            AL GEE++NVE++L+ F  QK   V+ ++VNAC+SRD + NV GVCFVGQD+T +K++ D
Sbjct: 678  ALQGEEEQNVEVRLKTFGQQKSKGVLILIVNACSSRDVQENVVGVCFVGQDVTGQKMVHD 737

Query: 743  KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-------- 794
            KF R+ GDY++I+Q+ NPLIPPIF  DE   C+EW+ +MEK+TGW R EV+G        
Sbjct: 738  KFTRIHGDYKSIVQNPNPLIPPIFGGDELGYCTEWSPSMEKLTGWKREEVLGKMLVGEVF 797

Query: 795  -------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEG 829
                                     + GQ T+ FPF FF+RQG+FVE  LTA++RTDA+ 
Sbjct: 798  GVQLMCCRLKGQDAVTKFMIVLNNAMDGQDTDKFPFSFFDRQGKFVEALLTANKRTDADD 857

Query: 830  KVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLES 889
             + G FCF+    P+L  AL  Q   +   +AK+KELAYIRQE+KNPL GI F   L+E 
Sbjct: 858  YITGVFCFLHTASPELLQALTVQRATEKVAFAKLKELAYIRQEIKNPLYGIMFTRNLMED 917

Query: 890  SSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMV 949
            + +SE Q+Q+++TS  CERQ+  I+D MDL  IE+G +EL++ EF +G+++DAVVSQ M+
Sbjct: 918  TDLSEEQKQFMDTSAVCERQLRKILDDMDLESIEDGYLELETAEFDMGSMMDAVVSQGMI 977

Query: 950  LLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLK 1009
              R+K L L+ + P EIK + L GD++RLQ VL+D+L   VR  PS +GWV IKV+   K
Sbjct: 978  TSREKGLQLIRETPREIKGMCLFGDQVRLQQVLADYLLNAVRFTPSSEGWVGIKVVSTKK 1037

Query: 1010 LIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVR 1069
             +      VH++FR+THPG G+P  L+ +M++ R +  T EGLGL + RKL+ +MNG V+
Sbjct: 1038 RLVGGFHVVHLEFRVTHPGSGLPEELVCEMFD-RGRGMTQEGLGLSMCRKLVKLMNGEVK 1096

Query: 1070 YVRENSKCYFVIDLELKTRGR 1090
            Y+R+  K YF+++LEL   GR
Sbjct: 1097 YIRDAGKSYFLVNLELPLAGR 1117


>gi|3724346|dbj|BAA33775.1| phytochrome 2 [Adiantum capillus-veneris]
          Length = 1140

 Score = 1275 bits (3299), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1108 (56%), Positives = 803/1108 (72%), Gaps = 62/1108 (5%)

Query: 36   KTIIDHYNADAGLLAEFEQSVA----SGKSFNYSRSVISP-----PEGVPEEQITAYLSK 86
            + ++    ADA L A FEQ+ +     G SF+Y RS+         E VP + +TAYL +
Sbjct: 30   RVVVAQTTADAKLHAVFEQAQSEGDTGGSSFDYMRSIEDARGSVLSERVPAQAVTAYLQR 89

Query: 87   IQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL---IGIDARTL 142
            +QRGGLIQPFGCMLA+EE +FR+I YSEN  EMLDL  +S     +  L   IG DARTL
Sbjct: 90   MQRGGLIQPFGCMLALEEGSFRVIAYSENAAEMLDLMPQSVPSVGVQVLVLGIGTDARTL 149

Query: 143  FTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDP 202
            FT  S A+L KA+ + ++S+LNPI VH   RS  KPF AI+HRIDVG+VID EP +  D 
Sbjct: 150  FTYASAAALEKASGAVDVSMLNPITVHC--RSSSKPFNAIVHRIDVGLVIDFEPVRPADV 207

Query: 203  AL-SLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
            A+ + AGA+QS KLA  AISRLQALP GDI LLCD+VVE+V++LTGYDRVM Y FH+D+H
Sbjct: 208  AVWAAAGALQSHKLAAKAISRLQALPVGDIDLLCDSVVEEVRELTGYDRVMAYKFHEDEH 267

Query: 262  GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
            GEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF +NRVRMICDC A+PV VIQ KEL+QP
Sbjct: 268  GEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMKNRVRMICDCRALPVRVIQDKELRQP 327

Query: 322  LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-----------MKLWGLVVCH 370
            L L  STLR+PHGCH QYM NMGSIASLVMAV++N  D             +LWGLVVCH
Sbjct: 328  LSLAGSTLRAPHGCHSQYMANMGSIASLVMAVVVNDNDEDVSNRSQQPKMRRLWGLVVCH 387

Query: 371  HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
            HT+PR +PF LR ACEFL+Q F LQL MEL++A Q+ EK+ILRTQ LLCDMLLRDAP  I
Sbjct: 388  HTTPRAVPFALRSACEFLMQVFGLQLNMELELAAQMREKHILRTQTLLCDMLLRDAPIGI 447

Query: 431  VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
            V++SP+IMDLVKCDGAALYYG   WL+G TP E+Q+KD+A WLL+ H D TGLSTDSLA+
Sbjct: 448  VSESPNIMDLVKCDGAALYYGKNFWLLGTTPIEAQIKDLAEWLLDVHRDSTGLSTDSLAD 507

Query: 491  AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
            AGYPGAA LG AVCGMA A+IT++DFLFWFRSHTAKE+KWGGAKH PE +D+G KMHPRS
Sbjct: 508  AGYPGAAALGDAVCGMAAAKITTRDFLFWFRSHTAKEIKWGGAKHDPEDRDDGRKMHPRS 567

Query: 551  SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGV 610
            SFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+ G+
Sbjct: 568  SFKAFLEVVKRRSLPWEDMEMDAIHSLQLILRGSFQDI-DDSDTKTMIHARLNDLKLHGM 626

Query: 611  DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
            DELS+VA EMVRLIETATAPIF VD+ G INGWNAKVAELTGL   EAM +SL+ +VV  
Sbjct: 627  DELSTVANEMVRLIETATAPIFAVDAGGFINGWNAKVAELTGLTVEEAMSRSLVRDVVVN 686

Query: 671  ESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFV 730
             S    E ++  AL G+E++NVE+KL+ +  Q     V ++VNAC+SRD+ +NV GVCFV
Sbjct: 687  ASMETAERVLDLALQGQEEQNVEIKLKTYGDQAIKGPVILIVNACSSRDFTDNVVGVCFV 746

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
            GQD+T +KV+MDKF R+QGDY+ I+Q+ NPLIPPIF +DE   CSEWN AMEK +GW R 
Sbjct: 747  GQDVTGQKVVMDKFTRIQGDYKTIVQNPNPLIPPIFGADEFGYCSEWNPAMEKFSGWKRE 806

Query: 791  EVIG---------------------------------ITGQGTENFPFGFFNRQGQFVEV 817
            +VIG                                 + G+ ++ FPFGFF+R G++ E 
Sbjct: 807  DVIGKMLIGEVFGSDLACCKLRGQDSMTKFMIILNAAMGGRDSDRFPFGFFDRYGKYAEA 866

Query: 818  ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPL 877
             L A++RTD++G + G FCF+    P+LQ AL+ Q         ++KE+AY++QE++NPL
Sbjct: 867  LLIANKRTDSDGAITGVFCFLHTASPELQQALQVQKRSARTALDRLKEVAYMKQEIRNPL 926

Query: 878  NGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLG 937
             GI F  KLL+++++++ Q+Q +ETS  CE+Q+  I+D  +   +++GN++L + EF +G
Sbjct: 927  YGIVFTRKLLDNTNLTDEQKQIMETSSLCEKQLQNILDEDNFEKLDQGNVDLDTLEFTMG 986

Query: 938  NILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPD 997
             ++DAV+SQ M+  R+K L L+ +   EIK   L GD+ RLQ VL+DFL   +R   S D
Sbjct: 987  TVMDAVISQGMIRSREKGLQLIRETHVEIKNTRLFGDQYRLQQVLADFLTTAIRFTSSSD 1046

Query: 998  GWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLS 1057
            GWV IKV+P +K +KD    VH +FR++HPG GIP  L++ MY+ R+Q  T EG+GL +S
Sbjct: 1047 GWVGIKVVPTIKNMKDGLHIVHFEFRVSHPGSGIPEDLVQQMYD-RSQEITQEGMGLSVS 1105

Query: 1058 RKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            RKL+ +MNG V+Y RE   CYF++ +EL
Sbjct: 1106 RKLVKLMNGDVKYTREAGVCYFLVTVEL 1133


>gi|159147355|gb|ABW91071.1| phytochrome-4 [Ceratodon purpureus]
          Length = 1125

 Score = 1275 bits (3298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1112 (56%), Positives = 810/1112 (72%), Gaps = 57/1112 (5%)

Query: 24   SSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPE-----GVPEE 78
            SS A +K  +K    +    ADA L A +E+S  SG SF+YS+SV    +      VP +
Sbjct: 9    SSGASVK--SKHSVRVAQTTADAKLFAVYEESNNSGDSFDYSKSVGQAAKPAVQAQVPAQ 66

Query: 79   QITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL 134
             +TAYL ++QRGGL Q FGCM+AVEE TFR+I YSEN  E+LDL  ++       E+ G 
Sbjct: 67   AVTAYLQRMQRGGLTQTFGCMIAVEENTFRVIAYSENAPELLDLMPQAVPSVGQQEVLG- 125

Query: 135  IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
            IG DAR+LFTP S A+L +AA++ +++++NPI VH+  RS  KPFYAI+HRIDVG+V+D 
Sbjct: 126  IGTDARSLFTPSSVAALERAASTHDLTMVNPISVHT--RSSGKPFYAIVHRIDVGVVMDF 183

Query: 195  EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
            EP +  D  +S AG + S KLA  AI+RLQ+LPGGDIGLLCDTVVE+V++LTGYDRVM Y
Sbjct: 184  EPVRPNDVVISTAGTLHSHKLAAKAIARLQSLPGGDIGLLCDTVVEEVRELTGYDRVMAY 243

Query: 255  NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
             FHDD+HGEV++EIRRSDLE YLG+H+P+ DIPQA+RFLF +NRVRMI DC A P  VIQ
Sbjct: 244  KFHDDEHGEVLAEIRRSDLESYLGLHYPSTDIPQASRFLFMKNRVRMIADCCAPPXKVIQ 303

Query: 315  SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS--------MKLWGL 366
             K+L+QP+ L  STLR+PHGCH QYM NMGS+AS+ +AVI+N ++          +LWGL
Sbjct: 304  DKDLRQPVTLAGSTLRAPHGCHAQYMGNMGSVASITLAVIVNDQEDDFGVQQKGRRLWGL 363

Query: 367  VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
            VVCHHTS R I +PLR ACEFL+Q F LQL ME+++  Q+ EK+ILRTQ LLCDMLLRDA
Sbjct: 364  VVCHHTSARTISYPLRCACEFLMQVFGLQLNMEVELQAQMREKHILRTQTLLCDMLLRDA 423

Query: 427  PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
            P  IV+QSP+IMDLVKCDGAALYY  R WL+G+TP+E Q+KD+A WLL NH D TGLSTD
Sbjct: 424  PIGIVSQSPNIMDLVKCDGAALYYNDRFWLLGITPSEQQIKDVAEWLLENHKDSTGLSTD 483

Query: 487  SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
            SLA+AGYP A LLG AVCGMA ARI+  DFLFWFRSHTAKE+KWGGAK   + KD+G KM
Sbjct: 484  SLADAGYPSANLLGDAVCGMAAARISPSDFLFWFRSHTAKEIKWGGAKQEADEKDDGRKM 543

Query: 547  HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
             PRSS  AFLEVVK RS PWE  E++AIHSLQ+++R SFQE++ ++ SK   + + +  K
Sbjct: 544  TPRSSLNAFLEVVKRRSLPWEDIEMDAIHSLQLILRGSFQEIDGDS-SKSMIHARLHDMK 602

Query: 607  MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
            +QG+DELS+VA EMVRLIETATAPI  VDS+G INGWNAKVAELTGLP  +AMG+SL+++
Sbjct: 603  LQGMDELSTVANEMVRLIETATAPILAVDSNGFINGWNAKVAELTGLPVGDAMGRSLVND 662

Query: 667  VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
            ++ +ES   VE L+  AL GEE++N+E++LR F  QK    V ++VNAC+SRD + NV G
Sbjct: 663  LILDESVEVVERLLYLALQGEEEQNIEVQLRTFGPQKSKGAVILIVNACSSRDVQENVVG 722

Query: 727  VCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTG 786
            VCFVGQD+T +K++ DKF R+ GDY++I+Q+ NPLIPPIF SDE   C+EW+ +MEK+TG
Sbjct: 723  VCFVGQDVTGQKMVHDKFTRIHGDYKSIVQNPNPLIPPIFGSDELGSCTEWSPSMEKLTG 782

Query: 787  WMRHEVIG---------------------------------ITGQGTENFPFGFFNRQGQ 813
            W R EV+G                                 + GQ T+ +PF FF+R G+
Sbjct: 783  WKREEVLGKMLVGEVFGMQQMCCRLKGQDAVTKFMIVINNAMDGQDTDKYPFSFFDRNGK 842

Query: 814  FVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEV 873
            FVE  LTA++RTDA+G + G FCF+ I  P+L  AL  Q   +   +AK+KELAYIRQE+
Sbjct: 843  FVEALLTANKRTDADGYITGVFCFLHIASPELLQALTVQRATEKVAFAKLKELAYIRQEI 902

Query: 874  KNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEE 933
            KNPL GI F   L+E + +S+ Q+Q+++TS  CERQ+  I+D MDL  IE+G +EL++ E
Sbjct: 903  KNPLYGIMFTRNLMEDTDLSDEQKQFMDTSAVCERQLRKILDDMDLESIEDGYLELETAE 962

Query: 934  FLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHA 993
            F +G+++DAVVSQ MV  R+K L L+ + P EIK + L GD++RLQ VL+DFL   VR  
Sbjct: 963  FEMGSMMDAVVSQGMVTSREKGLQLIRETPREIKNMCLFGDQVRLQQVLADFLLNAVRFT 1022

Query: 994  PSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLG 1053
            PS +GWV IKV+P  K +      VH++FR+THPG G+P  L+ +M++ R +  T EGLG
Sbjct: 1023 PSSEGWVGIKVVPTKKRLGGGFHVVHLEFRVTHPGSGLPEELVHEMFD-RGRGMTQEGLG 1081

Query: 1054 LKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            L + RKL+ +MNG V+Y+R+  K YF+++LEL
Sbjct: 1082 LSMCRKLVKLMNGEVKYIRDTGKSYFLVNLEL 1113


>gi|25986845|gb|AAM94953.1| phytochrome [Physcomitrella patens]
          Length = 1123

 Score = 1274 bits (3296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 630/1098 (57%), Positives = 797/1098 (72%), Gaps = 50/1098 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVI-SPPEGVPEEQITAYLSKIQRGGLIQPFG 97
            +    ADA L A FE+S  SG SF+YS+SV  S  E +P   +TAYL ++QRGGL Q FG
Sbjct: 23   VAQTTADAALQAVFEKSGDSGDSFDYSKSVSKSTAESLPSGAVTAYLQRMQRGGLTQSFG 82

Query: 98   CMLAVEEPTFRIIGYSENCLEMLDLRSRS--EDFELNGL-IGIDARTLFTPPSGASLAKA 154
            CM+AVE   FR+I YSEN  E+LDL  ++     E++ L IG D RTLFT  S ASL KA
Sbjct: 83   CMIAVEGTGFRVIAYSENAPEILDLVPQAVPSVGEMDTLRIGTDVRTLFTASSVASLEKA 142

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
            A ++E+SLLNPI V  N R   K  YAI HRID+GIVID E  K+ D  +S AGA+QS K
Sbjct: 143  AEAQEMSLLNPITV--NCRRSGKQLYAIAHRIDIGIVIDFEAVKTDDHLVSAAGALQSHK 200

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AI+RLQALPGG+IGLLCDTVVE+V++LTGYDRVM Y FH+D+HGEVV+EIRR+DLE
Sbjct: 201  LAAKAITRLQALPGGNIGLLCDTVVEEVRELTGYDRVMAYRFHEDEHGEVVAEIRRADLE 260

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PYLG+H+P  DIPQA+RFLF +N+VR+I DC A PV VIQ   L+QP+ L  STLRSPHG
Sbjct: 261  PYLGLHYPGTDIPQASRFLFMKNKVRIIADCSAPPVKVIQDPTLRQPVSLAGSTLRSPHG 320

Query: 335  CHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGLVVCHHTSPRYIPFPLRYAC 385
            CH QYM NMGSIASLVMAVIIN  +           KLWGLVVCHHTSPR +PFPLR AC
Sbjct: 321  CHAQYMGNMGSIASLVMAVIINDNEEDSHGSVQRGRKLWGLVVCHHTSPRTVPFPLRSAC 380

Query: 386  EFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDG 445
             FL+Q F LQL ME+++A QL EK+ILRTQ LLCDMLLRDAP  IV+Q P+IMDLVKCDG
Sbjct: 381  GFLMQVFGLQLNMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQIPNIMDLVKCDG 440

Query: 446  AALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCG 505
            AALYYG R WL+G TPTESQ+KDIA WLL  H D TGLSTDSLA+A YP A LLG AVCG
Sbjct: 441  AALYYGKRFWLLGTTPTESQIKDIAEWLLEYHKDSTGLSTDSLADANYPAAHLLGDAVCG 500

Query: 506  MATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFP 565
            MA A+IT+KDFLFWFRSHTAKE+KWGGAKH P  KD+G KMHPRSSFKAFLEVVK RS P
Sbjct: 501  MAAAKITAKDFLFWFRSHTAKEIKWGGAKHDPGEKDDGRKMHPRSSFKAFLEVVKRRSLP 560

Query: 566  WEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
            WE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+  +DELS VA EMVRLIE
Sbjct: 561  WEDVEMDAIHSLQLILRGSFQDI-DDSDTKTMIHARLNDLKLHDMDELSVVANEMVRLIE 619

Query: 626  TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
            TATAPI  VDS+G INGWNAK+A++TGLP SEA G+SL+ ++V +ES   VE L+  AL 
Sbjct: 620  TATAPILAVDSNGMINGWNAKIAQVTGLPVSEAHGRSLVKDLVTDESVAVVERLLYLALR 679

Query: 686  GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
            GEE++NVE+KL+ F  Q +  VV ++V+AC+S     NV GVCFVGQD+T +K+ MDKF 
Sbjct: 680  GEEEQNVEIKLKTFGTQTEKGVVILIVDACSSIHVSENVVGVCFVGQDVTGQKMFMDKFT 739

Query: 746  RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
            R+QGDY+ I+Q+ +PLIPPIF +DE   C EWN AME +TGW + EV+G           
Sbjct: 740  RIQGDYKTIVQNPHPLIPPIFGADEFGYCFEWNPAMEGLTGWKKDEVVGKLLVGEIFGMQ 799

Query: 795  ----------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVI 832
                                  + GQ T+ F F FF+R+G++V+V L+ ++RT+A+G + 
Sbjct: 800  MMCCRMKSQDAMTKFMIALNTAMDGQSTDKFTFSFFDREGKYVDVLLSTNKRTNADGVIT 859

Query: 833  GCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSI 892
            G FCF+QI   +LQ AL+ Q   +    AK+KELAYIRQE+KNPL GI F  +LLE + +
Sbjct: 860  GVFCFLQIASSELQQALKVQRATEKVAVAKLKELAYIRQEIKNPLCGITFTRQLLEDTDL 919

Query: 893  SENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLR 952
            S++Q+Q+L+TS  CE+Q+  +++ MDL  IE+G +EL + EF +G +++AV+SQ M   R
Sbjct: 920  SDDQQQFLDTSAVCEQQLQKVLNDMDLESIEDGYLELDTAEFEMGTVMNAVISQGMTTSR 979

Query: 953  DKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIK 1012
            +K L +  + P EI  + L GD+IRLQ VLSDFL   VR  PSP+GWV+IKV+P  K + 
Sbjct: 980  EKGLQIFRETPREINTMRLLGDQIRLQQVLSDFLLNTVRFTPSPEGWVKIKVVPTRKRLG 1039

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVR 1072
             +   VH++FR++HPG G+P  L+ +MY+ R +  T EGLGL + RKL+ +MNG V YVR
Sbjct: 1040 GSVHVVHLEFRVSHPGAGLPEELVLEMYD-RGKGMTQEGLGLNMCRKLVRLMNGDVHYVR 1098

Query: 1073 ENSKCYFVIDLELKTRGR 1090
            E  +CYFV+++EL    R
Sbjct: 1099 EAMQCYFVVNVELPMAQR 1116


>gi|57791660|gb|AAW56598.1| phytochrome D [Arabidopsis thaliana]
          Length = 1126

 Score = 1273 bits (3293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/1071 (57%), Positives = 797/1071 (74%), Gaps = 55/1071 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPP--EGVPEEQITAYLSKIQRGGLIQPF 96
            I  Y  DA L A FEQS  SGKSF+YS+S+ + P    VPE+QITAYLS+IQRGG  QPF
Sbjct: 60   IQQYTVDARLHAVFEQSGESGKSFDYSQSLKTAPYDSSVPEQQITAYLSRIQRGGYTQPF 119

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLA 152
            GC++AVEE TF IIGYSEN  EML L S+S    ED      IG D R+LF   S   L 
Sbjct: 120  GCLIAVEESTFTIIGYSENAREMLGLMSQSVPSIEDKSEVLTIGTDLRSLFKSSSYLLLE 179

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            +A  +REI+LLNPI +HSN+    KPFYAILHR+DVGI+IDLEP+++ DPALS+AGAVQS
Sbjct: 180  RAFVAREITLLNPIWIHSNNTG--KPFYAILHRVDVGILIDLEPARTEDPALSIAGAVQS 237

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
            QKLAV AIS LQ+LP GDI LLCDTVVE V+ LTGYDRVM+Y F +D+HGEVV+E +R+D
Sbjct: 238  QKLAVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRVMVYKFREDEHGEVVAESKRND 297

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A  V V+Q   L Q +CLV STLR+P
Sbjct: 298  LEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASAVRVVQDDRLTQSICLVGSTLRAP 357

Query: 333  HGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPFP 380
            HGCH QYMTNMGSIASL MAVIIN             ++SM+LWGLVVCHHTS R IPFP
Sbjct: 358  HGCHAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVCHHTSARCIPFP 417

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVTQ PSIMDL
Sbjct: 418  LRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVTQRPSIMDL 477

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKC+GAA  Y G+ + +GVTPT+SQ+ DI  WLL NH D TGLSTDSL +AGYP AA LG
Sbjct: 478  VKCNGAAFLYQGKYYSLGVTPTDSQINDIVEWLLANHSDSTGLSTDSLGDAGYPRAAALG 537

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
             AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +M+PRSSF+AFLEVVK
Sbjct: 538  DAVCGMAIACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMNPRSSFQAFLEVVK 597

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QGVDELSSVA 617
            +R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M  QG+ E+ +VA
Sbjct: 598  SRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGDDMVQQGMQEIGAVA 657

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRLIETAT PIF VD  G INGWNAK+AELTGL   +A+GKSL+ E++++E +  V+
Sbjct: 658  REMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEDAIGKSLVRELIYKEYKETVD 717

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             L+  AL G+E KNV +KL+ F  + Q   ++++VNAC+S+DY NN+ GVCFVGQD+T  
Sbjct: 718  RLLSXALKGDEGKNVXVKLKTFGSELQGKAMFVVVNACSSKDYLNNIVGVCFVGQDVTGH 777

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--- 794
            K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TGW R EVIG   
Sbjct: 778  KIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWPRSEVIGKLL 837

Query: 795  ---------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       I GQ T+ FPF FF+R+G+F++  LT ++R   
Sbjct: 838  VREVFGSYCRLKGPDALTKFMIVLHNAIGGQDTDKFPFPFFDRKGEFIQALLTLNKRVSV 897

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            +GK+IG FCF+QI  P+LQ ALE Q  ++ + +++ KELAYI Q +KNPL+G+RF + LL
Sbjct: 898  DGKIIGAFCFLQIPSPELQQALEVQRRQESEYFSRRKELAYIFQVIKNPLSGLRFTNSLL 957

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E + ++E+Q+Q LETS +CE+QI  I+  MD++ I++G+  L+  EF +GN+ +AVVSQV
Sbjct: 958  EDTDLNEDQKQLLETSVSCEKQISKIVGDMDVKSIDDGSFLLERTEFFIGNVTNAVVSQV 1017

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M+++R++NL L+ +IP E+K++++ GD+IRLQ VL++FL  +VR+AP  +G VE+ + P 
Sbjct: 1018 MLVVRERNLQLIRNIPTEVKSMAVYGDQIRLQQVLAEFLLSIVRYAPM-EGSVELHLCPT 1076

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSR 1058
            L  + D    V ++FR+   GEG+P   ++DM++  ++W +PEGLGL + R
Sbjct: 1077 LNQMADGFSAVRLEFRMACAGEGVPPEKVQDMFHS-SRWPSPEGLGLSVCR 1126


>gi|168029421|ref|XP_001767224.1| phytochrome 5b3 [Physcomitrella patens subsp. patens]
 gi|162681479|gb|EDQ67905.1| phytochrome 5b3 [Physcomitrella patens subsp. patens]
          Length = 1131

 Score = 1269 bits (3284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1101 (56%), Positives = 801/1101 (72%), Gaps = 52/1101 (4%)

Query: 33   NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV----ISPPEGVPEEQITAYLSKIQ 88
            +K    +    ADA L A +E+S  SG SF+YS+SV     S  + VP + +TAYL ++Q
Sbjct: 16   SKHSVRVQQTTADAKLQAVYEESNDSGDSFDYSKSVGQATKSTVQQVPAQAVTAYLQRMQ 75

Query: 89   RGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGLIGI--DARTLFTP 145
            RGGL Q FGCMLAVEE TFR+I YSEN  EMLDL  ++     L  ++GI  DAR LFTP
Sbjct: 76   RGGLTQNFGCMLAVEESTFRVIAYSENAPEMLDLMPQAVPSVGLKEVLGIGTDARLLFTP 135

Query: 146  PSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALS 205
             S ++L +AAA+ +++++NPI VHS  R+  KPFYAI+HRIDVGIVID EP +S D  +S
Sbjct: 136  SSASTLERAAATSDLTMVNPISVHS--RNSGKPFYAIVHRIDVGIVIDFEPVRSNDVVIS 193

Query: 206  LAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVV 265
             AGA+ S KLA  A+SRLQ+LPGGDIGLLCD VVE+V++LTGYDRVM Y FHDD+HGEV+
Sbjct: 194  TAGALHSHKLAAKAVSRLQSLPGGDIGLLCDAVVEEVRELTGYDRVMAYKFHDDEHGEVL 253

Query: 266  SEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLV 325
            +EIRRSDLE YLG+H+P+ DIPQA+RFLF +NRVRMI DC A PV VIQ K+L+QP+ L 
Sbjct: 254  AEIRRSDLESYLGLHYPSTDIPQASRFLFMKNRVRMIADCCAPPVKVIQDKDLRQPITLA 313

Query: 326  NSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYI 377
             STLR+PHGCH QYM NMGS+AS+ +AVI++ ++          +LWGLVVCHHTSPR I
Sbjct: 314  GSTLRAPHGCHAQYMGNMGSVASITLAVIVHDQEEDFGVQQKGRRLWGLVVCHHTSPRTI 373

Query: 378  PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
             FPLR ACEFL+Q F LQL ME+++  Q+ EK+ILRTQ LLCDMLLRDAP  IV+QSP+I
Sbjct: 374  SFPLRSACEFLMQVFGLQLNMEVELQAQMKEKHILRTQTLLCDMLLRDAPVGIVSQSPNI 433

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDLVKCDGAALYY  + WL+G TP+E Q+++IA WLL +H D TGLSTDSLA+AGYPGA 
Sbjct: 434  MDLVKCDGAALYYENQFWLLGTTPSEEQIEEIAAWLLEHHKDSTGLSTDSLADAGYPGAN 493

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
            LLG AVCGMA ARI+SKDFL WFRSH+AKE+KWGGAKH  E +D+  KM PRSSF AFLE
Sbjct: 494  LLGDAVCGMAAARISSKDFLLWFRSHSAKEIKWGGAKHDAEDRDDSRKMTPRSSFNAFLE 553

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVA 617
            VVK RS PWE  E++AIHSLQ+++R SFQ+++     K   +++ +  K+QG+DELS+VA
Sbjct: 554  VVKRRSVPWEDIEMDAIHSLQLILRGSFQDVDGSG-GKTMIHSRLHDLKLQGMDELSTVA 612

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRLIETATAPI  VDS+G INGWNAKVAELTGLP  EAMG+SL+ +++ EE    VE
Sbjct: 613  NEMVRLIETATAPILAVDSNGFINGWNAKVAELTGLPVGEAMGRSLVKDLILEEYVEVVE 672

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             L+  AL GEE++N+E+ L+ F  QK    V ++VNAC+SRD + NV GVCFVGQD+T +
Sbjct: 673  RLLYLALQGEEEQNIEVSLKTFGAQKAKGAVILVVNACSSRDVQENVVGVCFVGQDVTGQ 732

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--- 794
            K++ DKF R+ GDY++I+QS NPLIPPIF SDE   C EW+ +MEK+TGW R EV+G   
Sbjct: 733  KMVHDKFTRIHGDYKSIVQSPNPLIPPIFGSDELGYCIEWSPSMEKLTGWKREEVLGKML 792

Query: 795  ------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          + GQ T+ +PF F +RQG+ VE  LTA++R
Sbjct: 793  VGEIFGVHQMCCRLKGQDAVTKFMIVLNNAMDGQDTDKYPFSFHDRQGKLVEALLTANKR 852

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            TDA+G + G FCF+ I  P+L  AL  Q   +   +AK+KELAYIRQE+KNPL GI F  
Sbjct: 853  TDADGYITGVFCFLHIASPELLQALTVQRATEKVAFAKLKELAYIRQEIKNPLYGIMFTR 912

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
             L+E + +S+ Q+QY++TS  CERQ+  I+D MDL  IE+G +EL++ EF +G+++DAVV
Sbjct: 913  NLMEDTDLSDEQKQYMDTSAVCERQLRKILDDMDLESIEDGYLELETMEFEMGSMMDAVV 972

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQ MV  R+K L L+ + P EI+ + L GD++RLQ VL+DFL   VR  PS +GWV IKV
Sbjct: 973  SQGMVTSREKGLQLIRETPREIQGMCLFGDQVRLQQVLADFLLNAVRFTPSSEGWVGIKV 1032

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
            +P  K +      VH++FR+THPG G+P  L+ +M++ R +  T EGLGL + RKL+ +M
Sbjct: 1033 VPTRKRLGGGFHVVHLEFRVTHPGSGLPEELVHEMFD-RGRGMTQEGLGLSMCRKLVKLM 1091

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
            NG V+Y+R+  K  F++ LEL
Sbjct: 1092 NGEVKYIRDTGKSCFLVSLEL 1112


>gi|139001625|dbj|BAF51709.1| phytochrome3 [Physcomitrella patens]
          Length = 1122

 Score = 1265 bits (3274), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1093 (56%), Positives = 788/1093 (72%), Gaps = 51/1093 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEG-VPEEQITAYLSKIQRGGLIQPFG 97
            +    ADA L A FE+S  SG +F+YS+SV     G +    +TAYL ++QRGGL Q FG
Sbjct: 23   VAQTTADAALHAVFEKSGVSGDNFDYSKSVSKSTAGSLHTGAVTAYLQRMQRGGLTQSFG 82

Query: 98   CMLAVEEPTFRIIGYSENCLEMLDLRSRS--EDFELNGL-IGIDARTLFTPPSGASLAKA 154
            CM+AVEE  FR+I YSEN  E LDL  ++     E+N L IG D RTLFTP S ASL KA
Sbjct: 83   CMVAVEETGFRVIAYSENAPEFLDLMPQAVPNIGEINTLGIGTDVRTLFTPSSAASLEKA 142

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
            A ++EISLLNPI V+  S+   KP YAI HRID+GIVID E     D  +S  GA+QS K
Sbjct: 143  AETQEISLLNPITVYCRSK---KPLYAIAHRIDIGIVIDFEAVNMNDVTISADGALQSHK 199

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AI+RLQALPGGDIGLLCDTVVE+V++LTGYDRVM Y FH+D+HGEVV+EIRR+DLE
Sbjct: 200  LAAKAITRLQALPGGDIGLLCDTVVEEVRELTGYDRVMAYKFHEDEHGEVVAEIRRTDLE 259

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PYLG+H+PA DIPQA+RFLF +NRVRMI DC A PV ++Q   L+QP+ L  STLRSPHG
Sbjct: 260  PYLGLHYPATDIPQASRFLFMKNRVRMIGDCSAPPVKIVQDPNLRQPVSLAGSTLRSPHG 319

Query: 335  CHLQYMTNMGSIASLVMAVIINSKDS---------MKLWGLVVCHHTSPRYIPFPLRYAC 385
            CH QYM NMGSI+S+VMAVIIN  +           KLWGLVVCHHTSPR +PFPLR AC
Sbjct: 320  CHAQYMGNMGSISSIVMAVIINDNEDDSRGSVQRGRKLWGLVVCHHTSPRTVPFPLRSAC 379

Query: 386  EFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDG 445
            EFL+Q F LQL ME+++A QL EK+ILRTQ LLCDMLLRDAP  IV+Q P+IMDLVKCDG
Sbjct: 380  EFLMQVFGLQLNMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQVPNIMDLVKCDG 439

Query: 446  AALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCG 505
            AALYYG R WL+G TPTESQ+KDIA WLL  H D TGLSTDSLA+A YP A LLG AVCG
Sbjct: 440  AALYYGKRFWLLGTTPTESQIKDIAEWLLEYHKDSTGLSTDSLADANYPAAHLLGDAVCG 499

Query: 506  MATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFP 565
            MA A+ITSKDFLFWFRSHTAKE+KWGGAKH P  KD+  KMHPRSSFKAFLEVVK RS P
Sbjct: 500  MAAAKITSKDFLFWFRSHTAKEIKWGGAKHDPGEKDDNRKMHPRSSFKAFLEVVKRRSLP 559

Query: 566  WEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
            WE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+  +DELS VA EMVRLIE
Sbjct: 560  WEDVEMDAIHSLQLILRGSFQDI-DDSDTKTMIHARLNDLKLHDMDELSIVANEMVRLIE 618

Query: 626  TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
            TATAPI  VDS+G INGWNAK+A+ TGLP +EAMG+SL+ ++V +ES   VE L+  AL 
Sbjct: 619  TATAPILAVDSNGMINGWNAKIAQETGLPVAEAMGRSLVKDLVMDESLEVVERLLYLALR 678

Query: 686  GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
            GEE++ VE+KL+ F  Q     V ++VNAC SRD   NV GVCFVGQD+T +K+ MDKF 
Sbjct: 679  GEEEQGVEIKLKTFGAQTVKGAVILIVNACASRDVSENVVGVCFVGQDVTGQKMFMDKFT 738

Query: 746  RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
            R+QGDY+ I+Q+ +PLIPPIF +DE   C EWN AME +TGW R EVIG           
Sbjct: 739  RIQGDYKTIVQNPHPLIPPIFGADEFGYCFEWNPAMEGLTGWKRDEVIGKLLVGEIFGMQ 798

Query: 795  ----------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVI 832
                                  + GQ T+ F   FF+R+G++V+  L+ ++RT+A+G + 
Sbjct: 799  KMCCQMKSQDAMTKFMISLNSAMDGQNTDKFSLSFFDREGRYVDALLSTNKRTNADGAIT 858

Query: 833  GCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSI 892
            G  CF+QI   +LQ AL  Q   +    AK+KELAYIRQE+KNPL GI F  +LLE + +
Sbjct: 859  GVICFLQIASSELQQALRVQQATEKVAIAKLKELAYIRQEIKNPLCGITFTRQLLEDTDL 918

Query: 893  SENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLR 952
            S +Q+Q+L+TS  CE+Q+  +++ +DL  IE+G +EL + EF +  ++DAV+SQ M + R
Sbjct: 919  SNDQKQFLDTSAVCEQQLQKVLNDLDLESIEDGYLELDTAEFEMRTVMDAVISQGMTISR 978

Query: 953  DKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIK 1012
            +K L ++ + P EI  + L GD++RLQ VLSDFL   VR  PS +GWV+IKV+P  K + 
Sbjct: 979  EKGLQIIRETPREIITMRLFGDQVRLQQVLSDFLLNAVRFTPSSEGWVKIKVVPTRKRLG 1038

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVR 1072
              +  +H++FR++HPG G+P  L+ +M++ + +  T EGLGL + RKL+ +MNG V+YVR
Sbjct: 1039 GNEHVMHLEFRVSHPGAGLPEELVLEMFD-KGKGMTQEGLGLNICRKLVRLMNGDVQYVR 1097

Query: 1073 ENSKCYFVIDLEL 1085
            E  +CYFV+ +EL
Sbjct: 1098 EAMQCYFVLYVEL 1110


>gi|168027033|ref|XP_001766035.1| phytochrome 3 [Physcomitrella patens subsp. patens]
 gi|162682678|gb|EDQ69094.1| phytochrome 3 [Physcomitrella patens subsp. patens]
          Length = 1123

 Score = 1261 bits (3263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1094 (56%), Positives = 788/1094 (72%), Gaps = 52/1094 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEG-VPEEQITAYLSKIQRGGLIQPFG 97
            +    ADA L A FE+S  SG +F+YS+SV     G +    +TAYL ++QRGGL Q FG
Sbjct: 23   VAQTTADAALHAVFEKSGVSGDNFDYSKSVSKSTAGSLHTGAVTAYLQRMQRGGLTQSFG 82

Query: 98   CMLAVEEPTFRIIGYSENCLEMLDLRSRS--EDFELNGL-IGIDARTLFTPPSGASLAKA 154
            CM+AVEE  FR+I YSEN  E LDL  ++     E+N L IG D RTLFTP S ASL KA
Sbjct: 83   CMVAVEETGFRVIAYSENAPEFLDLMPQAVPNIGEINTLGIGTDVRTLFTPSSAASLEKA 142

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
            A ++EISLLNPI V+  S+   KP YAI HRID+GIVID E     D  +S  GA+QS K
Sbjct: 143  AETQEISLLNPITVYCRSK---KPLYAIAHRIDIGIVIDFEAVNMNDVTISADGALQSHK 199

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AI+RLQALPGGDIGLLCDTVVE+V++LTGYDRVM Y FH+D+HGEVV+EIRR+DLE
Sbjct: 200  LAAKAITRLQALPGGDIGLLCDTVVEEVRELTGYDRVMAYKFHEDEHGEVVAEIRRTDLE 259

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PYLG+H+PA DIPQA+RFLF +NRVRMI DC A PV ++Q   L+QP+ L  STLRSPHG
Sbjct: 260  PYLGLHYPATDIPQASRFLFMKNRVRMIGDCSAPPVKIVQDPNLRQPVSLAGSTLRSPHG 319

Query: 335  CHLQYMTNMGSIASLVMAVIINSKDS---------MKLWGLVVCHHTSPRYIPFPLRYAC 385
            CH QYM NMGSI+S+VMAVIIN  +           KLWGLVVCHHTSPR +PFPLR AC
Sbjct: 320  CHAQYMGNMGSISSIVMAVIINDNEDDSRGSVQRGRKLWGLVVCHHTSPRTVPFPLRSAC 379

Query: 386  EFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDG 445
            EFL+Q F LQL ME+++A QL EK+ILRTQ LLCDMLLRDAP  IV+Q P+IMDLVKCDG
Sbjct: 380  EFLMQVFGLQLNMEVELAAQLREKHILRTQTLLCDMLLRDAPIGIVSQVPNIMDLVKCDG 439

Query: 446  AALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCG 505
            AALYYG R WL+G TPTESQ+KDIA WLL  H D TGLSTDSLA+A YP A LLG AVCG
Sbjct: 440  AALYYGKRFWLLGTTPTESQIKDIAEWLLEYHKDSTGLSTDSLADANYPAAHLLGDAVCG 499

Query: 506  MATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFP 565
            MA A+ITSKDFLFWFRSHTAKE+KWGGAKH P  KD+  KMHPRSSFKAFLEVVK RS P
Sbjct: 500  MAAAKITSKDFLFWFRSHTAKEIKWGGAKHDPGEKDDNRKMHPRSSFKAFLEVVKRRSLP 559

Query: 566  WEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
            WE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+  +DELS VA EMVRLIE
Sbjct: 560  WEDVEMDAIHSLQLILRGSFQDI-DDSDTKTMIHARLNDLKLHDMDELSIVANEMVRLIE 618

Query: 626  TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
            TATAPI  VDS+G INGWNAK+A+ TGLP +EAMG+SL+ ++V +ES   VE L+  AL 
Sbjct: 619  TATAPILAVDSNGMINGWNAKIAQETGLPVAEAMGRSLVKDLVMDESLEVVERLLYLALR 678

Query: 686  G-EEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKF 744
            G EE++ VE+KL+ F  Q     V ++VNAC SRD   NV GVCFVGQD+T +K+ MDKF
Sbjct: 679  GSEEEQGVEIKLKTFGAQTVKGAVILIVNACASRDVSENVVGVCFVGQDVTGQKMFMDKF 738

Query: 745  IRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---------- 794
             R+QGDY+ I+Q+ +PLIPPIF +DE   C EWN AME +TGW R EVIG          
Sbjct: 739  TRIQGDYKTIVQNPHPLIPPIFGADEFGYCFEWNPAMEGLTGWKRDEVIGKLLVGEIFGM 798

Query: 795  -----------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKV 831
                                   + GQ T+ F   FF+R+G++V+  L+ ++RT+A+G +
Sbjct: 799  QKMCCQMKSQDAMTKFMISLNSAMDGQNTDKFSLSFFDREGRYVDALLSTNKRTNADGAI 858

Query: 832  IGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSS 891
             G  CF+QI   +LQ AL  Q   +    AK+KELAYIRQE+KNPL GI F  +LLE + 
Sbjct: 859  TGVICFLQIASSELQQALRVQQATEKVAIAKLKELAYIRQEIKNPLCGITFTRQLLEDTD 918

Query: 892  ISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLL 951
            +S +Q+Q+L+TS  CE+Q+  +++ +DL  IE+G +EL + EF +  ++DAV+SQ M + 
Sbjct: 919  LSNDQKQFLDTSAVCEQQLQKVLNDLDLESIEDGYLELDTAEFEMRTVMDAVISQGMTIS 978

Query: 952  RDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLI 1011
            R+K L ++ + P EI  + L GD++RLQ VLSDFL   VR  PS +GWV+IKV+P  K +
Sbjct: 979  REKGLQIIRETPREIITMRLFGDQVRLQQVLSDFLLNAVRFTPSSEGWVKIKVVPTRKRL 1038

Query: 1012 KDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYV 1071
               +  +H++FR++HPG G+P  L+ +M++ + +  T EGLGL + RKL+ +MNG V+YV
Sbjct: 1039 GGNEHVMHLEFRVSHPGAGLPEELVLEMFD-KGKGMTQEGLGLNICRKLVRLMNGDVQYV 1097

Query: 1072 RENSKCYFVIDLEL 1085
            RE  +CYFV+ +EL
Sbjct: 1098 REAMQCYFVLYVEL 1111


>gi|25986851|gb|AAM94956.1| phytochrome [Ceratodon purpureus]
          Length = 1126

 Score = 1259 bits (3259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1098 (56%), Positives = 801/1098 (72%), Gaps = 56/1098 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEG-----VPEEQITAYLSKIQRGGLI 93
            +    +DA L A +E+S  SG SF+YS+SV    +      VP + +TAYL ++QRGGL 
Sbjct: 22   VAQTTSDAKLQAVYEESNDSGDSFDYSKSVAQAAKSTGQQQVPAQAVTAYLQRMQRGGLT 81

Query: 94   QPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGA 149
            Q FGCMLAVEE TFR+I YSEN  E+LD+  ++       ++ G IG DAR+LFTP S  
Sbjct: 82   QTFGCMLAVEENTFRVIAYSENAPELLDVMPQAVPSLGQQDVLG-IGTDARSLFTPSSAT 140

Query: 150  SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
            +L +AA + ++SL+NPI VHS  R+  KPFYAI+HRIDVGIV+  EP +  D  +S AG 
Sbjct: 141  ALERAAGAADLSLVNPISVHS--RASGKPFYAIIHRIDVGIVMGFEPVRPNDVIVSTAGT 198

Query: 210  VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
            + S KLA  AI+RLQAL GGDIGLLCDTVVE+V++LTGYDRVM Y FH+D+HGEV++EIR
Sbjct: 199  LHSHKLAAKAIARLQALSGGDIGLLCDTVVEEVRELTGYDRVMAYKFHEDEHGEVLAEIR 258

Query: 270  RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            RSDLEPYLG+H+P+ DIPQA+RFLF +NRVRMI DC A PV VIQ K+L+QP+ L  STL
Sbjct: 259  RSDLEPYLGLHYPSTDIPQASRFLFMKNRVRMIVDCWAPPVKVIQDKDLRQPISLAGSTL 318

Query: 330  RSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGLVVCHHTSPRYIPFP 380
            R+PHGCH QYM NMGS+AS+ MAVI N ++         + +LWGLVVCHHTS R I FP
Sbjct: 319  RAPHGCHAQYMGNMGSVASVTMAVIXNDQEDDFGGQQTRARRLWGLVVCHHTSARTISFP 378

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LR ACEFL+Q F LQL ME+++  Q  EK+ILRTQ +LCDMLLRDAP  IV+Q P+IMDL
Sbjct: 379  LRSACEFLMQVFGLQLNMEVELENQKREKHILRTQTMLCDMLLRDAPVGIVSQCPNIMDL 438

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKCDGAALYYG R WL+G+TP+E Q+++IA WLL +H D TGLSTDSLA+AGYPGA LLG
Sbjct: 439  VKCDGAALYYGKRFWLLGITPSEEQIEEIANWLLEHHQDSTGLSTDSLADAGYPGANLLG 498

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
             AVCGMA ARIT  DFLFWFRSHTAKE+K GGAKH  + KD+G KM PRSSF AFLEV+K
Sbjct: 499  DAVCGMAAARITPTDFLFWFRSHTAKEIKRGGAKHEADDKDDGRKMTPRSSFNAFLEVMK 558

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
             RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+QG+DELS+VA EM
Sbjct: 559  RRSVPWEDIEMDAIHSLQLILRGSFQDI-DDSDTKTMIHARLNDLKLQGMDELSTVANEM 617

Query: 621  VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
            VRLIETATAPI  VDS+G INGWNAKVAELTGLP  +AMG+SL+ +++ +ES   VE L+
Sbjct: 618  VRLIETATAPILAVDSNGFINGWNAKVAELTGLPVGDAMGRSLVQDLIVDESVEVVERLL 677

Query: 681  CRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVL 740
              AL G+E+++VE++LR F  QK    V ++VNAC+SRD ++NV GVCFVGQD+T +K +
Sbjct: 678  YLALQGDEEQDVEIQLRTFGPQKGKGAVILIVNACSSRDVQDNVVGVCFVGQDVTSQKQV 737

Query: 741  MDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------ 794
             DKF R+ GDY++I+Q+ NPLIPPIF SDE   C+EW+ +MEK+TGW R EV+G      
Sbjct: 738  HDKFTRIHGDYKSIVQNPNPLIPPIFGSDELGYCTEWSPSMEKLTGWKRDEVLGKMLVGE 797

Query: 795  ---------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       + GQ T+ +PF F++RQG+FVE  LTA++RTDA
Sbjct: 798  VFGTQQICCRLKGQDSVTKFMIVLNNAMDGQDTDKYPFSFYDRQGKFVEALLTANKRTDA 857

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            +G + G FCF+ I  P+L  AL  Q   +   +AK+KELAYIRQE+KNPL GI F   L+
Sbjct: 858  DGYITGVFCFLHIASPELLQALTVQRATEKVAFAKLKELAYIRQEIKNPLYGIMFTRNLM 917

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E + +S+ Q+Q+++TS  CERQ+  I+D MDL  IE+G +EL++ E  LG+++DAVVSQ 
Sbjct: 918  EDTDLSDEQKQFMDTSAVCERQLRKILDDMDLESIEDGYLELETAESELGSMMDAVVSQG 977

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M+  R+K L L+ + P EI  +SL GD++RLQ VL+DFL   VR  PS +GWV IKV+P 
Sbjct: 978  MITSREKGLQLIRETPREINDMSLFGDQVRLQHVLADFLLNAVRLTPSSEGWVGIKVVPT 1037

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
             K +      VH++FR+ HPG G+P  L+ +M++ R +  T EGLGL + RKL+ +MNG 
Sbjct: 1038 KKRLGGGFHVVHLEFRVAHPGSGLPEELVHEMFD-RGRGMTQEGLGLSMCRKLVKLMNGE 1096

Query: 1068 VRYVRENSKCYFVIDLEL 1085
            V+Y+R+  K YF+++LEL
Sbjct: 1097 VKYIRDTGKSYFLVNLEL 1114


>gi|25986849|gb|AAM94955.1| phytochrome [Physcomitrella patens]
          Length = 1122

 Score = 1258 bits (3255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/1093 (56%), Positives = 785/1093 (71%), Gaps = 51/1093 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEG-VPEEQITAYLSKIQRGGLIQPFG 97
            +    ADA L A FE+S  SG +F+YS+SV     G +    +TAYL ++QRGGL Q FG
Sbjct: 23   VAQTTADAALHAVFEKSGVSGDNFDYSKSVSKSTAGSLHTGAVTAYLQRMQRGGLTQSFG 82

Query: 98   CMLAVEEPTFRIIGYSENCLEMLDLRSRS--EDFELNGL-IGIDARTLFTPPSGASLAKA 154
            CM+AVEE  FR+I YSEN  E LDL  ++     E+N L IG D RTLFTP S ASL KA
Sbjct: 83   CMVAVEETGFRVIAYSENAPEFLDLMPQAVPNIGEINTLGIGTDVRTLFTPSSAASLEKA 142

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
            A ++EISLLNPI V+  S+   KP YAI HRID+GIVID E     D  +S  GA+QS K
Sbjct: 143  AETQEISLLNPITVYCRSK---KPLYAIAHRIDIGIVIDFEAVNMNDVTISADGALQSHK 199

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AI+RLQALPGGDIGLLCDTVVE+V++LTGYDRVM Y FH+D+HGEVV+EIRR+DLE
Sbjct: 200  LAAKAITRLQALPGGDIGLLCDTVVEEVRELTGYDRVMAYKFHEDEHGEVVAEIRRTDLE 259

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PYLG+H+PA DIPQA+RFLF +NRVRMI DC A P  ++Q   L+QP+ L  STLRSPHG
Sbjct: 260  PYLGLHYPATDIPQASRFLFMKNRVRMIGDCSAPPEKIVQDPNLRQPVSLAGSTLRSPHG 319

Query: 335  CHLQYMTNMGSIASLVMAVIINSKDS---------MKLWGLVVCHHTSPRYIPFPLRYAC 385
            CH QYM NMGSI+S+VMAVIIN  +           K WGLVVCHHTSPR +PFPLR AC
Sbjct: 320  CHAQYMGNMGSISSIVMAVIINDNEDDSRGSVQRGRKQWGLVVCHHTSPRTVPFPLRSAC 379

Query: 386  EFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDG 445
            EFL+Q F LQL ME+++A QL EK+ILRTQ LLCDMLLRDAP  IV+Q P+IMDLVKCDG
Sbjct: 380  EFLMQVFGLQLNMEVELAAQLREKHILRTQTLLCDMLLRDAPTGIVSQVPNIMDLVKCDG 439

Query: 446  AALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCG 505
            AALYYG R WL+G TPTESQ+KDIA WLL  H D TGLSTDSLA+A YP A LLG AVCG
Sbjct: 440  AALYYGKRFWLLGTTPTESQIKDIAEWLLEYHKDSTGLSTDSLADANYPAAHLLGDAVCG 499

Query: 506  MATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFP 565
            MA A+ITSKDFLFWFRSHTAKE+KWGGAKH P  KD+  KMHPRS FKAFLEVVK RS P
Sbjct: 500  MAAAKITSKDFLFWFRSHTAKEIKWGGAKHDPGEKDDNRKMHPRSPFKAFLEVVKRRSLP 559

Query: 566  WEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
            WE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+  +DELS VA EMVRLIE
Sbjct: 560  WEDVEMDAIHSLQLILRGSFQDI-DDSDTKTMIHARLNDLKLHDMDELSIVANEMVRLIE 618

Query: 626  TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
            TATAPI  VDS+G INGWNAK+A+ TGLP +EAMG+SL+ ++V +ES   VE L+  AL 
Sbjct: 619  TATAPILAVDSNGMINGWNAKIAQETGLPVAEAMGRSLVKDLVMDESLEVVERLLYLALR 678

Query: 686  GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
            GEE++ VE+KL+ F  Q     V ++VNAC SRD   NV GVCFVGQD+T +K+ MDKF 
Sbjct: 679  GEEEQGVEIKLKTFGAQTVKGAVTLIVNACASRDVSENVVGVCFVGQDVTGQKMFMDKFT 738

Query: 746  RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
            R+QGDY+ I+Q+ +PLIPPIF +DE   C EWN AME +TGW R EVIG           
Sbjct: 739  RIQGDYKTIVQNPHPLIPPIFGADEFGYCFEWNPAMEGLTGWKRDEVIGKLLVGEIFGMQ 798

Query: 795  ----------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVI 832
                                  + GQ T+ F   FF+R+G++V+  L+ ++RT+A+G + 
Sbjct: 799  KMCCQMKSQDAMTKFMISLNSAMDGQNTDKFSLSFFDREGRYVDALLSTNKRTNADGAIT 858

Query: 833  GCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSI 892
            G  CF+QI   +LQ AL  Q   +    AK+KELAYIRQE+KNPL GI F  +LLE + +
Sbjct: 859  GVICFLQIASSELQQALRVQQATEKVAIAKLKELAYIRQEIKNPLCGITFTRQLLEDTDL 918

Query: 893  SENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLR 952
            S +Q+Q+L+TS  CE+Q+  +++ +DL  IE+G +EL + EF +  ++DAV+SQ M + R
Sbjct: 919  SNDQKQFLDTSAVCEQQLQKVLNDLDLESIEDGYLELDTAEFEMRTVMDAVISQGMTISR 978

Query: 953  DKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIK 1012
            +K L ++ + P EI  + L GD++RLQ VLSDFL   VR  PS +GWV+IKV+P  K + 
Sbjct: 979  EKGLQIIRETPREIITMRLFGDQVRLQQVLSDFLLNAVRFTPSSEGWVKIKVVPTRKRLG 1038

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVR 1072
              +  +H++FR++HPG G+P  L+ +M++ + +  T EGLGL + RKL+ +MNG V+YVR
Sbjct: 1039 GNEHVMHLEFRVSHPGAGLPEELVLEMFD-KGKGMTQEGLGLNICRKLVRLMNGDVQYVR 1097

Query: 1073 ENSKCYFVIDLEL 1085
            E  +CYFV+ +EL
Sbjct: 1098 EAMQCYFVLYVEL 1110


>gi|548512|sp|P36505.1|PHY1_PHYPA RecName: Full=Phytochrome 1
 gi|402606|emb|CAA52933.1| phytochrome [Physcomitrella patens]
          Length = 1132

 Score = 1256 bits (3249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 624/1098 (56%), Positives = 790/1098 (71%), Gaps = 50/1098 (4%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVI-SPPEGVPEEQITAYLSKIQRGGLIQPFG 97
            +    ADA L A FE+S  SG SF+YS+SV  S  E +P   +TAYL ++QRGGL Q FG
Sbjct: 23   VAQTTADAALQAVFEKSGDSGDSFDYSKSVSKSTAESLPSGAVTAYLQRMQRGGLTQSFG 82

Query: 98   CMLAVEEPTFRIIGYSENCLEMLDLRSRS--EDFELNGL-IGIDARTLFTPPSGASLAKA 154
            CM+AVE   FR+I YSEN  E+LDL  ++     E++ L IG D RTLFT  S ASL KA
Sbjct: 83   CMIAVEGTGFRVIAYSENAPEILDLVPQAVPSVGEMDTLRIGTDVRTLFTASSVASLEKA 142

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
            A ++E+SLLNPI V  N R   K  YAI HRID+GIVID E  K+ D  +S AGA+QS K
Sbjct: 143  AEAQEMSLLNPITV--NCRRSGKQLYAIAHRIDIGIVIDFEAVKTDDHLVSAAGALQSHK 200

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AI+RLQALPGG+IGLLCDTVVE+V++LTGYDRVM Y FH+D+HGEVV+EIRR+DLE
Sbjct: 201  LAAKAITRLQALPGGNIGLLCDTVVEEVRELTGYDRVMAYRFHEDEHGEVVAEIRRADLE 260

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PYLG+H+P  DIPQA+RFLF +N+VR+I DC A PV VIQ   L+QP+ L  STLRSPHG
Sbjct: 261  PYLGLHYPGTDIPQASRFLFMKNKVRIIADCSAPPVKVIQDPTLRQPVSLAGSTLRSPHG 320

Query: 335  CHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGLVVCHHTSPRYIPFPLRYAC 385
            CH QYM NMGSIASLVMAVIIN  +           KLWGLVVCHHTSPR +PFPLR AC
Sbjct: 321  CHAQYMGNMGSIASLVMAVIINDNEEDSHGSVQRGRKLWGLVVCHHTSPRTVPFPLRSAC 380

Query: 386  EFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDG 445
             FL+Q F LQL ME++ A QL EK+ILRTQ LLCDMLLRDAP  IV+Q P+IMDLVKCDG
Sbjct: 381  GFLMQVFGLQLNMEVESAAQLREKHILRTQTLLCDMLLRDAPIGIVSQIPNIMDLVKCDG 440

Query: 446  AALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCG 505
            AALYYG   WL+G TPTESQ+KDIA WLL  H D TGLSTDSLA+A YP A LLG AVCG
Sbjct: 441  AALYYGKPFWLLGTTPTESQIKDIAEWLLEYHKDSTGLSTDSLADANYPAAHLLGDAVCG 500

Query: 506  MATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFP 565
            MA A+IT+KDFLFWFRSHTAKE+KWGGAKH P    +G KMHPRSSFKAFLEVVK RS P
Sbjct: 501  MAAAKITAKDFLFWFRSHTAKEIKWGGAKHDPGENHDGRKMHPRSSFKAFLEVVKRRSLP 560

Query: 566  WEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
            WE  E++AIHSLQ+++R SFQ++  ++D+K   + + N  K+  +DELS VA EMVRLIE
Sbjct: 561  WEDVEMDAIHSLQLILRGSFQDI-ADSDTKTMIHARLNDLKLHDMDELSVVANEMVRLIE 619

Query: 626  TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
            TATAPI  VDS+G INGWNAK+A++TGLP SEA G+SL+ ++V +ES   VE L+  AL 
Sbjct: 620  TATAPILAVDSNGMINGWNAKIAQVTGLPVSEAHGRSLVKDLVTDESVAVVERLLYLALR 679

Query: 686  GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
            GEE++NVE+KL+ F  Q +  VV ++V+AC+S     NV GVCFVGQD+T +K+ MDKF 
Sbjct: 680  GEEEQNVEIKLKTFGTQTEKGVVILIVDACSSIHVSENVVGVCFVGQDVTGQKMFMDKFT 739

Query: 746  RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
            R+QGDY+ I+Q+ +PLIPPIF +DE   C EWN AME +TGW + EV+G           
Sbjct: 740  RIQGDYKTIVQNPHPLIPPIFGADEFGYCFEWNPAMEGLTGWKKDEVVGKLLVGEIFGMQ 799

Query: 795  ----------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVI 832
                                  + GQ T+ F F FF+R+G++V+V L+ ++RT+A+G + 
Sbjct: 800  MMCCRMKSQDAMTKFMIALNTAMDGQSTDKFTFSFFDREGKYVDVLLSTNKRTNADGVIT 859

Query: 833  GCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSI 892
            G FCF+QI   +LQ AL+ Q   +    AK+KELAYI +E+KNPL G+ F  +LLE + +
Sbjct: 860  GVFCFLQIASSELQQALKVQRATEKVAVAKLKELAYIVREIKNPLCGLTFTRQLLEDTDL 919

Query: 893  SENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLR 952
            S++Q+Q+L+TS  CE+Q+   ++ MDL  IE+G +EL + EF +G +++AV+SQ M   R
Sbjct: 920  SDDQQQFLDTSAVCEQQLQKSLNDMDLESIEDGYLELDTAEFEMGTVMNAVISQGMTTSR 979

Query: 953  DKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIK 1012
            +K L +  + P EI  + L GD+IRLQ VLSDFL   VR  PSP+GWV+IKV+P  K + 
Sbjct: 980  EKGLQIFRETPREINTMRLLGDQIRLQQVLSDFLLNTVRFTPSPEGWVKIKVVPTRKRLG 1039

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVR 1072
             +   VH++FR++HPG G+P  L+ +MY+ R +  T EGLGL + RKL+ +MNG V YVR
Sbjct: 1040 GSVHVVHLEFRVSHPGAGLPEELVLEMYD-RGKGMTQEGLGLNMCRKLVRLMNGDVHYVR 1098

Query: 1073 ENSKCYFVIDLELKTRGR 1090
            E  +CYFV+++EL    R
Sbjct: 1099 EAMQCYFVVNVELPMAQR 1116


>gi|1125699|gb|AAC49128.1| phytochrome [Mesotaenium caldariorum]
 gi|1587953|prf||2207374B phytochrome photoreceptor
          Length = 1142

 Score = 1236 bits (3199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1138 (54%), Positives = 796/1138 (69%), Gaps = 67/1138 (5%)

Query: 18   NTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISP----PE 73
            +T+    S  +     K +  +    ADA L   FE S A G SF+Y++SV +      E
Sbjct: 2    STSRMSQSSGESTAKTKREVRVAQATADAKLNTAFEASAAVGGSFDYTKSVGASLNAGSE 61

Query: 74   GVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELN 132
             +P   +TAYL ++QRGG+ Q FGCML VEE +FR+  +SEN  EMLDL  ++       
Sbjct: 62   AIPSSAVTAYLQRMQRGGITQTFGCMLMVEEGSFRVRAFSENAGEMLDLVPQAVPSMGQQ 121

Query: 133  GLI--GIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
             LI  G D RTLFT  S + L KAA + ++S++NP+ + S  R+ +KPF+A+LHRIDVG+
Sbjct: 122  SLIAVGTDIRTLFTSASVSLLEKAAMATDVSVMNPVSLQS--RAAKKPFFAVLHRIDVGL 179

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            V+DLEP +  DP +S AGA+QS KLA  AISRLQ+LPGGDIGLLCD VVE+V++LTGYDR
Sbjct: 180  VVDLEPVRPSDPNVSAAGAMQSHKLAAKAISRLQSLPGGDIGLLCDAVVEEVRELTGYDR 239

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+D+HGEV++EIRRSDLEPYLG+H+PA DIPQAARFLF +NRVR+ICDC A PV
Sbjct: 240  VMAYKFHEDEHGEVIAEIRRSDLEPYLGLHYPATDIPQAARFLFMKNRVRIICDCSAPPV 299

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------- 360
             VIQ   +K P+ L  STLR  HGCH QYM NMGS+ASLVMAVIIN   S          
Sbjct: 300  KVIQDPTMKHPISLAGSTLRGVHGCHAQYMANMGSVASLVMAVIINDNSSEEGATAAGGI 359

Query: 361  ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                 KLWGLVVCHH+SPRY+PFPLR ACEFL+Q F LQL ME++++ QL EK+ILRTQ 
Sbjct: 360  LHKGRKLWGLVVCHHSSPRYVPFPLRSACEFLMQVFGLQLNMEVELSSQLREKHILRTQT 419

Query: 417  LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
            LLCDMLLRDAP  IV+QSP+I DLVKCDGAAL+Y GR WL+GVTP+E+Q++DIA WLL++
Sbjct: 420  LLCDMLLRDAPMGIVSQSPNITDLVKCDGAALFYHGRAWLLGVTPSEAQVRDIAAWLLDS 479

Query: 477  HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
            H D TGLSTDSLA+AGYP A  LG +VCGMA ARITSKDFLFWFRSH  KEVKW GAK  
Sbjct: 480  HKDSTGLSTDSLADAGYPNADSLGVSVCGMAAARITSKDFLFWFRSHAQKEVKWAGAKQE 539

Query: 537  PEHKDN-----GGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM--- 588
            P  +D      GG+MHPRSSF+AFLEVVK RS PWE  E++AIHSLQ+++R SFQ+M   
Sbjct: 540  PGDRDREEGEEGGRMHPRSSFQAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSFQDMEGE 599

Query: 589  --EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAK 646
                +  +K   N + N  K+QG+DELS+VA EMVRLIETATAPI  VDS G +NGWNAK
Sbjct: 600  GGGSQQGNKRMINARLNDLKLQGMDELSTVANEMVRLIETATAPILAVDSLGCVNGWNAK 659

Query: 647  VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKF--ELQKQ 704
            V+ELTGLP SEAMGKSL+ ++V  ES+ AVE ++  AL GEE++NVE++L+ +  +L   
Sbjct: 660  VSELTGLPVSEAMGKSLVKDLVQRESREAVERVLYMALNGEEEQNVEIQLKTWGPQLHSH 719

Query: 705  HSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPP 764
               V ++VNAC SRD   +V GVCFVGQD+T EK ++DKFIR+QGDY  I++S N LIPP
Sbjct: 720  GGTVILVVNACASRDVSESVVGVCFVGQDVTGEKEVLDKFIRIQGDYTTIVRSRNSLIPP 779

Query: 765  IFASDENACCSEWNAAMEKVTGWMRHEVIG------------------------------ 794
            IF SDE  CC+EWN AMEK+TG  R +VIG                              
Sbjct: 780  IFGSDEYGCCTEWNPAMEKLTGVRREDVIGRMLMGDVFGSALRLRGSDGLTQFMIVLNRA 839

Query: 795  ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGL 854
            + G  T+ FPF F++R+G+ V+  LTA++RTDA+G + G FCF+  +  +LQ AL  Q  
Sbjct: 840  MDGADTDKFPFTFYDREGKCVDSLLTANKRTDADGAITGVFCFLHTVSLELQQALSVQKA 899

Query: 855  EDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTII 914
             +    AK KELAYIRQE++NPL+GI F    +E + +SE+Q+Q +ETS  CE+Q+  I+
Sbjct: 900  AERVAEAKAKELAYIRQEIQNPLDGIHFARSFIEHTELSEDQKQLMETSATCEKQLRRIL 959

Query: 915  DGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGD 974
            D MDL  IEEG +EL++ EF++  ++++VVSQ MV    K L L  D P E K++ + GD
Sbjct: 960  DDMDLESIEEGYLELETGEFMMATVMNSVVSQGMVQSSKKGLQLFCDTPPEFKSMCVFGD 1019

Query: 975  RIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSH 1034
            ++RLQ VL+DFL   V+  P+  GWVEIKV+P ++ +       H++FR+TH GEG+P  
Sbjct: 1020 QVRLQQVLADFLMNAVQFTPA-SGWVEIKVVPNVRSLPGGITMAHMEFRVTHSGEGLPED 1078

Query: 1035 LIEDMYNGRNQWT-TPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRGRQ 1091
            L+  M++  +  + + EGLGL + RK++ +M+G VRYVRE  K YF++ L+L    R+
Sbjct: 1079 LVHQMFDRADAHSKSQEGLGLSMCRKIVRLMSGEVRYVREPGKSYFLVLLDLPLAQRE 1136


>gi|6226671|sp|P42496.2|PHY_ADICA RecName: Full=Phytochrome 1
 gi|3327373|dbj|BAA31710.1| phytochrome [Adiantum capillus-veneris]
 gi|3337115|dbj|BAA31856.1| phytochrome 1 [Adiantum capillus-veneris]
          Length = 1118

 Score = 1209 bits (3129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/1093 (54%), Positives = 781/1093 (71%), Gaps = 63/1093 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            I   +ADA L A +E+S  SG SF+YS+SV +  EG+  + +TAYL ++QRGGL+Q FGC
Sbjct: 22   IAQTSADAKLYAAYEESSESG-SFDYSQSVSAGKEGISSQLVTAYLQRMQRGGLVQQFGC 80

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRSEDF--ELNGL-IGIDARTLFTPPSGASLAKAA 155
            ++AVEE TFR++ Y  N  EMLD+ +++     + + L IG D RTL +P S ++L +  
Sbjct: 81   LIAVEEETFRVLAYGANAPEMLDVATQAVPTMGQYSRLCIGADVRTLLSPASASALDRVI 140

Query: 156  ASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKL 215
               ++S+ NPI V S  RS  KPFYAILHR DVG+VIDLEP +  D +++  GA+QS KL
Sbjct: 141  GVVDVSMFNPITVQS--RSSGKPFYAILHRNDVGLVIDLEPIRPDDASIT-GGALQSHKL 197

Query: 216  AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP 275
            A  AI+RLQ+LPGGDIGLLCD+VVE+V +LTG+DRVM Y FH+D+HGEVV+EIRR+DLEP
Sbjct: 198  AAKAIARLQSLPGGDIGLLCDSVVEEVHELTGFDRVMAYKFHEDEHGEVVAEIRRTDLEP 257

Query: 276  YLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGC 335
            Y+G+H+PA DIPQAARFLF +NRVRMICDC   PV +IQ K L QP+ L  S LR+PHGC
Sbjct: 258  YIGLHYPATDIPQAARFLFMKNRVRMICDCRLPPVKLIQDKTLSQPMSLTGSKLRAPHGC 317

Query: 336  HLQYMTNMGSIASLVMAVIINSKDS---------MKLWGLVVCHHTSPRYIPFPLRYACE 386
            H QYM NM SI+SLVMAVI+N  D          +KLWGLVVCHHTSPRY+PFP+R ACE
Sbjct: 318  HTQYMANMNSISSLVMAVIVNDSDDDSPGHSSQGIKLWGLVVCHHTSPRYVPFPVRSACE 377

Query: 387  FLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGA 446
            FL+Q FSLQL ME+ +A Q+ EK+ILRTQ LLCDMLLRDAP  IV+QSP+IMDLV CDGA
Sbjct: 378  FLMQVFSLQLNMEVGMAAQVREKHILRTQTLLCDMLLRDAPIGIVSQSPNIMDLVTCDGA 437

Query: 447  ALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGM 506
            ALYYG +CWL+G TPTE+Q+ DIA WLL+ H D TGLSTDSLA+ GYP A+ LG AVCG+
Sbjct: 438  ALYYGKKCWLLGTTPTEAQIVDIAAWLLDCHKDSTGLSTDSLAKTGYPEASCLGDAVCGL 497

Query: 507  ATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPW 566
            A A+IT+ DFLFWFRSHTAKEV+WGGA+H PE +D+G +MHPRSSFKAFLEVVK +S PW
Sbjct: 498  AAAKITATDFLFWFRSHTAKEVRWGGARHDPEERDDGRRMHPRSSFKAFLEVVKQQSLPW 557

Query: 567  EVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIET 626
            E  E++AIHSLQ+++R SFQ++++ N +K   + + N  K+QG+DELS+VA EMVRLIET
Sbjct: 558  EDVEMDAIHSLQLILRGSFQDIDDSN-TKTMIHARLNDLKLQGLDELSTVASEMVRLIET 616

Query: 627  ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
            ATAPI  VD  G INGWN KVAELTGL    AMGKSL  E+VHEES+  VE ++  AL G
Sbjct: 617  ATAPILAVDGQGLINGWNGKVAELTGLSFETAMGKSLAKELVHEESKTIVERVLHLALEG 676

Query: 687  EEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIR 746
            EE++++E+ LR ++  KQ  VV ++VN C SRD  NNV GVCFVGQD+T +K+++D+FIR
Sbjct: 677  EEEQDIEIHLRTYDQHKQKGVVILIVNTCCSRDVSNNVVGVCFVGQDVTGQKLVLDRFIR 736

Query: 747  LQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------ 794
            +QGDY+AI+QS+NPLIPPIF +DE   CSEWNAAMEK++ W R EV+G            
Sbjct: 737  IQGDYKAIVQSLNPLIPPIFGADEYGFCSEWNAAMEKLSNWRREEVLGKMLVGEIFGLQM 796

Query: 795  ---------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                 + GQ +E FP  F++R G+ VE  L AS+RTDA+G++ G
Sbjct: 797  VCCRLQGQDVVTKLMIVLNDAVNGQESEKFPLVFYDRNGRRVEALLIASKRTDADGRITG 856

Query: 834  CFCFMQILVPDL-QPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSI 892
             FCF+    P+L Q  +  +  E +D     KEL+Y+++E+K PL G+ F   +LE +++
Sbjct: 857  VFCFLHTASPELLQALIIKRAKEKVD-----KELSYVKEELKKPLEGLAFTRTVLEGTNL 911

Query: 893  SENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLR 952
            +  QRQ ++T+  CERQ+  I++  DL  IEEG M+L+  EF +G+++DAV+SQ M   R
Sbjct: 912  TIEQRQLIKTNAWCERQLRKILED-DLNNIEEGYMDLEMSEFFMGSVIDAVISQGMAASR 970

Query: 953  DKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPD----GWVEIKVLPGL 1008
             K + +L +IP ++K + L GD+ RLQ VL+D L C + HA + +     WV IKV    
Sbjct: 971  GKGVQILTEIPNDVKLMCLFGDQARLQQVLADLLFCAINHATTTNEDEKDWVTIKVSRTK 1030

Query: 1009 KLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRV 1068
              + D    +H +FR++H G+GI   L+E+M N   +W TPEGL + +S  L+ +MNG V
Sbjct: 1031 TRLDDGVHLMHFEFRISHSGQGISEALVEEMTNKSQKW-TPEGLAISISCTLIRLMNGDV 1089

Query: 1069 RYVRE-NSKCYFV 1080
            +Y  +  +KC+ V
Sbjct: 1090 KYTTDAGNKCFLV 1102


>gi|2499556|sp|Q40762.1|PHY_PICAB RecName: Full=Phytochrome
 gi|1399958|gb|AAB03339.1| phytochrome [Picea abies]
          Length = 1136

 Score = 1201 bits (3108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/1110 (55%), Positives = 785/1110 (70%), Gaps = 71/1110 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEG--VPEEQITAYLSKIQRGGLIQP 95
            +I     DA L AEFE SV    SF+Y++S+    +   VP E + AYL ++Q+  LIQP
Sbjct: 28   VITQTPVDAKLQAEFEGSV---HSFDYTKSIDISGDSSSVPSETVKAYLQRLQKEMLIQP 84

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--------------IGIDART 141
            FGC+LAVEE +  ++GYSEN  EMLD+   +      G               IG+DART
Sbjct: 85   FGCVLAVEEGSCAVVGYSENAPEMLDVVGGAHAVPSIGGQQQEGGGGGGGLLRIGMDART 144

Query: 142  LFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGD 201
            LF P S A+L KAA   ++ L+NPI V  N     KPFYAIL+RID G+VID EP    D
Sbjct: 145  LFKPASAAALQKAATFADMHLVNPIFVRCNRSG--KPFYAILNRIDAGLVIDFEPVMPSD 202

Query: 202  PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
              +S AGA+QS KLA  AISRLQ+LPGGDI LLCDTVV++V++LTGYDRVM Y FH+D+H
Sbjct: 203  VPVSAAGALQSYKLAAKAISRLQSLPGGDIRLLCDTVVQEVRELTGYDRVMAYRFHEDEH 262

Query: 262  GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
            GEVV+E+RR DLEPYLG+H+PA DIPQA+RFLF +NRVRMICDC A PV VIQ K L+QP
Sbjct: 263  GEVVAEMRRPDLEPYLGLHYPATDIPQASRFLFMKNRVRMICDCCAPPVNVIQDKRLRQP 322

Query: 322  LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVV 368
            L L  STLR+PHGCH QYM NMGSIASLVM+V  N              ++  KLWGLVV
Sbjct: 323  LSLCGSTLRAPHGCHAQYMANMGSIASLVMSVTTNENGDDSEGGGQQQPQNRRKLWGLVV 382

Query: 369  CHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPF 428
            CHHTSPR IPFPLRYACEFL+Q F +QL  E+++A QL EK+ILR Q +LCDMLLRDAP 
Sbjct: 383  CHHTSPRVIPFPLRYACEFLMQVFGIQLNKEVELAAQLREKHILRVQPVLCDMLLRDAPV 442

Query: 429  SIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSL 488
             IV+Q+P+IMDLVKCDGAAL YG R WL+G TPTE+Q+ DIA WLL +H D TGLSTDSL
Sbjct: 443  GIVSQTPNIMDLVKCDGAALLYGKRLWLLGTTPTEAQILDIADWLLEHHRDSTGLSTDSL 502

Query: 489  AEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHP 548
            AEAGYPGAA LG AVCG+A ARITSKDFLFWFRSHTAKE+ WGGAKH P  KD+G +MHP
Sbjct: 503  AEAGYPGAASLGDAVCGIAAARITSKDFLFWFRSHTAKEIIWGGAKHDPNDKDDGRRMHP 562

Query: 549  RSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQ 608
            RSSFKAFLEVVK RS PWE  E++AIHSLQ+++RDSF ++++ +DSK   + + N  ++Q
Sbjct: 563  RSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRDSFHDIDD-SDSKTMIHARLNDLRLQ 621

Query: 609  GVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVV 668
            G+DELS+V  EMVRLIETAT PI  +DS+G +NGWN K AELTGL A E +G+ LID V 
Sbjct: 622  GIDELSAVTNEMVRLIETATVPILAIDSNGLVNGWNTKAAELTGLLADEVIGRPLIDLVQ 681

Query: 669  HEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVC 728
            H+  +  V+ ++  AL GEE++NVE+KL+ F +Q++   V ++VNAC+SRD + NV GVC
Sbjct: 682  HDSVE-IVKKMLYLALQGEEEQNVEIKLKTFGIQEEKGPVVLIVNACSSRDLEENVVGVC 740

Query: 729  FVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWM 788
            FV QD+T +++ MDKF  LQGDY AI+Q+ NPLIPPIF +DE   CSEWN AMEK+TGW 
Sbjct: 741  FVAQDVTWQRIAMDKFTHLQGDYRAIVQNPNPLIPPIFGADEYGYCSEWNPAMEKLTGWK 800

Query: 789  RHEVIG---------------------------------ITGQGTENFPFGFFNRQGQFV 815
            R EVIG                                 + G+ TE FPF FF+R G+  
Sbjct: 801  REEVIGKMLVGEVFGIHRMSCQLKGQDGLTKLRIVLNNAMAGKETEKFPFSFFDRHGKNT 860

Query: 816  EVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKN 875
            E  L+A++RTDAEG + G FCF+ +   +LQ AL+ Q + +     ++KELAYIRQE++N
Sbjct: 861  EALLSANKRTDAEGIITGVFCFLHVTSTELQQALQVQRMAEQAAMDRLKELAYIRQEIRN 920

Query: 876  PLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFL 935
            PL GI F  KL+ES+ +SE Q+Q ++TS  C+RQ++ ++D  DL  IE+G +EL + EF 
Sbjct: 921  PLYGIIFTRKLMESTDLSEEQKQIVQTSALCQRQLVKVLDDADLESIEDGYLELDTIEFT 980

Query: 936  LGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS 995
            LG +LDAVVSQ M+L R+K L L+ D PEEIK + L GD++RLQ +LS+FL   +R + S
Sbjct: 981  LGTVLDAVVSQGMILSREKGLQLIRDSPEEIKTMCLYGDQLRLQQILSNFLINALRFSTS 1040

Query: 996  PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLK 1055
             +GWV  KV+P  + +      +H++FR+TH G+GIP  LI++M+   NQ    EGLGL 
Sbjct: 1041 -EGWVGNKVVPTKRHLGSGVNVMHMEFRITHSGQGIPEELIKEMFV-HNQDMFQEGLGLY 1098

Query: 1056 LSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + ++L+ +MNG V+Y+RE  +  F+I++E 
Sbjct: 1099 MCQQLVKIMNGDVQYLREAGRSSFIINVEF 1128


>gi|158321996|gb|ABW33477.1| phytochrome P [Pinus sylvestris]
 gi|158321998|gb|ABW33478.1| phytochrome P [Pinus sylvestris]
 gi|158322000|gb|ABW33479.1| phytochrome P [Pinus sylvestris]
 gi|158322002|gb|ABW33480.1| phytochrome P [Pinus sylvestris]
 gi|158322004|gb|ABW33481.1| phytochrome P [Pinus sylvestris]
 gi|158322006|gb|ABW33482.1| phytochrome P [Pinus sylvestris]
 gi|158322008|gb|ABW33483.1| phytochrome P [Pinus sylvestris]
 gi|158322010|gb|ABW33484.1| phytochrome P [Pinus sylvestris]
 gi|158322012|gb|ABW33485.1| phytochrome P [Pinus sylvestris]
 gi|158322014|gb|ABW33486.1| phytochrome P [Pinus sylvestris]
 gi|158322016|gb|ABW33487.1| phytochrome P [Pinus sylvestris]
 gi|158322020|gb|ABW33489.1| phytochrome P [Pinus sylvestris]
 gi|158322022|gb|ABW33490.1| phytochrome P [Pinus sylvestris]
          Length = 864

 Score = 1198 bits (3100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/865 (67%), Positives = 689/865 (79%), Gaps = 49/865 (5%)

Query: 58  SGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCL 117
           SGKSF+Y+RS+ S  E VPE+QITAYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +
Sbjct: 3   SGKSFDYTRSIKSTTESVPEQQITAYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAV 62

Query: 118 EMLDLRSRS----EDFELNGL-IGIDARTLFTPPSGASLAKAAASREISLLNPILVH-SN 171
           EMLDL  +S    E  + + L IG D RTLFT  S  SL KAA ++EISL+NPI VH  N
Sbjct: 63  EMLDLAPQSVPSMEKPQQDVLTIGTDVRTLFTAASAHSLEKAAVAQEISLMNPIWVHCKN 122

Query: 172 SRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDI 231
           SR   KPFYAI+HRIDVG+VIDLEP ++GD  +S AGAVQSQKLAV AISRLQ+LP GD+
Sbjct: 123 SR---KPFYAIVHRIDVGMVIDLEPLRTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDV 179

Query: 232 GLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAAR 291
           GLLCDTVVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+R
Sbjct: 180 GLLCDTVVENVRELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASR 239

Query: 292 FLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVM 351
           FLF QNRVRMICDC A PV VIQS+EL QPLCLV STLR+PHGCH QYM NMGSIASLVM
Sbjct: 240 FLFMQNRVRMICDCMATPVKVIQSEELMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVM 299

Query: 352 AVIINSKD---------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402
           AVIIN  D         SMKLWGLVVCHHTSPR +PFPLRYACEFL+QA  LQL MELQ+
Sbjct: 300 AVIINGNDDEGGGSGRNSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQALGLQLNMELQL 359

Query: 403 AMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPT 462
           A QL EK+ILRTQ LLCDMLLRDAP  IVTQSPSI DLVKCDGAALYYGG CW++GVTPT
Sbjct: 360 AAQLTEKHILRTQTLLCDMLLRDAPMGIVTQSPSIKDLVKCDGAALYYGGMCWMLGVTPT 419

Query: 463 ESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRS 522
           E+Q+KDIA WLL +HGD TGLSTDSLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRS
Sbjct: 420 EAQIKDIADWLLEHHGDSTGLSTDSLADAGYPGAASLGDAVCGMASARITSKDFLFWFRS 479

Query: 523 HTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMR 582
           HTAKE+KWGGAKHHP+ KD+  +MHPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R
Sbjct: 480 HTAKEMKWGGAKHHPDDKDDARRMHPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILR 539

Query: 583 DSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTING 642
            SF+++++   +K   +++ N  ++QG+DELSSVA EMVRLIETATAPI  VD +G +NG
Sbjct: 540 GSFRDIDDSG-TKTMVHSRLNDLRLQGIDELSSVASEMVRLIETATAPILAVDYNGLVNG 598

Query: 643 WNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQ 702
           WNAKVAELTGLP  EAMG SL+ ++V E+S   VE ++  AL GEE+KNVE+ L+ F  Q
Sbjct: 599 WNAKVAELTGLPVGEAMGMSLVQDLVFEQSVERVEKMLHNALRGEEEKNVEMMLKTFGPQ 658

Query: 703 KQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLI 762
           K+   V ++VNAC+SRD+ +N+ GVCFVGQD+T +KV+MDKFIR+QGDY +I+QS NPLI
Sbjct: 659 KEKEAVILVVNACSSRDFTDNIVGVCFVGQDVTSQKVVMDKFIRIQGDYRSIVQSPNPLI 718

Query: 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIG---------------------------- 794
           PPIFASDE ACCSEWNAAMEKVTGW   EVIG                            
Sbjct: 719 PPIFASDEYACCSEWNAAMEKVTGWTHDEVIGKMLVGEIFGGCCRLKGQDAVTKFTIVLH 778

Query: 795 --ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQ 852
             I GQ  E FPF FF++QG++VE  LTA++RTDA+G++ G FCF+QI   +LQ ALE Q
Sbjct: 779 SAIDGQEIEKFPFAFFDKQGKYVEALLTANKRTDADGRITGSFCFLQIASSELQHALEVQ 838

Query: 853 GLEDMDIYAKIKELAYIRQEVKNPL 877
             ++   +A++KELAYIRQE+KNPL
Sbjct: 839 RQQEKKCFARLKELAYIRQEIKNPL 863


>gi|158322024|gb|ABW33491.1| phytochrome P [Pinus sylvestris]
          Length = 864

 Score = 1198 bits (3100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/865 (67%), Positives = 689/865 (79%), Gaps = 49/865 (5%)

Query: 58  SGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCL 117
           SGKSF+Y+RS+ S  E VPE+QITAYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +
Sbjct: 3   SGKSFDYTRSIKSTTESVPEQQITAYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAV 62

Query: 118 EMLDLRSRS----EDFELNGL-IGIDARTLFTPPSGASLAKAAASREISLLNPILVH-SN 171
           EMLDL  +S    E  + + L IG D RTLFT  S  SL KAA ++EISL+NPI VH  N
Sbjct: 63  EMLDLAPQSVPSMEKPQQDVLTIGTDVRTLFTAASAHSLEKAAVAQEISLMNPIWVHCKN 122

Query: 172 SRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDI 231
           SR   KPFYAI+HRIDVG+VIDLEP ++GD  +S AGAVQSQKLAV AISRLQ+LP GD+
Sbjct: 123 SR---KPFYAIVHRIDVGMVIDLEPLRTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDV 179

Query: 232 GLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAAR 291
           GLLCDTVVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+R
Sbjct: 180 GLLCDTVVENVRELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASR 239

Query: 292 FLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVM 351
           FLF QNRVRMICDC A PV VIQS+EL QPLCLV STLR+PHGCH QYM NMGSIASLVM
Sbjct: 240 FLFMQNRVRMICDCMATPVKVIQSEELMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVM 299

Query: 352 AVIINSKD---------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402
           AVIIN  D         SMKLWGLVVCHHTSPR +PFPLRYACEFL+QA  LQL MELQ+
Sbjct: 300 AVIINGNDDEGGGSGRNSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQALGLQLNMELQL 359

Query: 403 AMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPT 462
           A QL EK+ILRTQ LLCDMLLRDAP  IVTQSPSI DLVKCDGAALYYGG CWL+GVTPT
Sbjct: 360 AAQLTEKHILRTQTLLCDMLLRDAPMGIVTQSPSIKDLVKCDGAALYYGGMCWLLGVTPT 419

Query: 463 ESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRS 522
           E+Q+KDIA WLL +HGD TGLSTDSLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRS
Sbjct: 420 EAQIKDIADWLLEHHGDSTGLSTDSLADAGYPGAASLGDAVCGMASARITSKDFLFWFRS 479

Query: 523 HTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMR 582
           HTAKE+KWGGAKHHP+ KD+  +MHPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R
Sbjct: 480 HTAKEMKWGGAKHHPDDKDDARRMHPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILR 539

Query: 583 DSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTING 642
            SF+++++   +K   +++ N  ++QG+DELSSVA EMVRLIETATAPI  VD +G +NG
Sbjct: 540 GSFRDIDDSG-TKTMVHSRLNDLRLQGIDELSSVASEMVRLIETATAPILAVDYNGLVNG 598

Query: 643 WNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQ 702
           WNAKVAELTGLP  EAMG SL+ ++V E+S   VE ++  AL GEE+KNVE+ L+ F  Q
Sbjct: 599 WNAKVAELTGLPVGEAMGMSLVQDLVFEQSVERVEKMLHNALRGEEEKNVEMMLKTFGPQ 658

Query: 703 KQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLI 762
           K+   V ++VNAC+SRD+ +N+ GVCFVGQD+T +KV+MDKFIR+QGDY +I+QS NPLI
Sbjct: 659 KEKEAVILVVNACSSRDFTDNIVGVCFVGQDVTSQKVVMDKFIRIQGDYRSIVQSPNPLI 718

Query: 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIG---------------------------- 794
           PPIFASDE ACCSEWNAAMEKVTGW   EVIG                            
Sbjct: 719 PPIFASDEYACCSEWNAAMEKVTGWTHDEVIGKMLVGEIFGGCCRLKGQDAVTKFTIVLH 778

Query: 795 --ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQ 852
             I GQ  E FPF FF++QG++VE  LTA++RTDA+G++ G FCF+QI   +LQ ALE Q
Sbjct: 779 SAIDGQEIEKFPFAFFDKQGKYVEALLTANKRTDADGRITGSFCFLQIASSELQHALEVQ 838

Query: 853 GLEDMDIYAKIKELAYIRQEVKNPL 877
             ++   +A++KELAYIRQE+KNPL
Sbjct: 839 RQQEKKCFARLKELAYIRQEIKNPL 863


>gi|740579|prf||2005378A phytochrome
          Length = 1117

 Score = 1198 bits (3099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/1093 (54%), Positives = 780/1093 (71%), Gaps = 64/1093 (5%)

Query: 39   IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
            I   +A+A L A +E+S  SG SF+YS+SV +  EG+  + +TAYL ++QRGGL+Q FGC
Sbjct: 22   IAQTSANAKLYAAYEESSESG-SFDYSQSVSAGKEGISSQLVTAYLQRMQRGGLVQQFGC 80

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRSEDF--ELNGL-IGIDARTLFTPPSGASLAKAA 155
            ++AVEE TFR++   E   EMLD+ +++     + + L IG D RTL +P S ++L +  
Sbjct: 81   LIAVEEETFRVLHMCE-APEMLDVATQAVPTMGQYSRLCIGADVRTLLSPASASALDRVI 139

Query: 156  ASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKL 215
               ++S+ NPI V S  RS  KPFYAILHR DVG+VIDLEP +  D +++  GA+QS KL
Sbjct: 140  GVVDVSMFNPITVQS--RSSGKPFYAILHRNDVGLVIDLEPIRPDDASIT-GGALQSHKL 196

Query: 216  AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP 275
            A  AI+RLQ+LPGGDIGLLCD+VVE+V +LTG+DRVM Y FH+D+HGEVV+EIRR+DLEP
Sbjct: 197  AAKAIARLQSLPGGDIGLLCDSVVEEVHELTGFDRVMAYKFHEDEHGEVVAEIRRTDLEP 256

Query: 276  YLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGC 335
            Y+G+H+PA DIPQAARFLF +NRVRMICDC   PV +IQ K L QP+ L  STLR+PHGC
Sbjct: 257  YIGLHYPATDIPQAARFLFMKNRVRMICDCRLPPVKLIQDKTLSQPMSLTGSTLRAPHGC 316

Query: 336  HLQYMTNMGSIASLVMAVIINSKDS---------MKLWGLVVCHHTSPRYIPFPLRYACE 386
            H QYM NM SI+SLVMAVI+N  D          +KLWGLVVCHHTSPRY+PFP+R ACE
Sbjct: 317  HTQYMANMNSISSLVMAVIVNDSDDDSAGHSSQGIKLWGLVVCHHTSPRYVPFPVRSACE 376

Query: 387  FLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGA 446
            FL+Q FSLQL ME+ +A Q+ EK+ILRTQ LLCDMLLRDAP  IV+QSP+IMDLV CDGA
Sbjct: 377  FLMQVFSLQLNMEVGMAAQVREKHILRTQTLLCDMLLRDAPIGIVSQSPNIMDLVTCDGA 436

Query: 447  ALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGM 506
            ALYYG +CWL+G TPTE+Q+ DIA WLL+ H D TGLSTDSLA+ GYP A+ LG AVCG+
Sbjct: 437  ALYYGKKCWLLGTTPTEAQIVDIAAWLLDCHKDSTGLSTDSLAKTGYPEASCLGDAVCGL 496

Query: 507  ATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPW 566
            A A+IT+ DFLFWFRSHTAKEV+WGGA+H PE +D+G +MHPRSSFKAFLEVVK +S PW
Sbjct: 497  AAAKITATDFLFWFRSHTAKEVRWGGARHDPEERDDGRRMHPRSSFKAFLEVVKQQSLPW 556

Query: 567  EVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIET 626
            E  E++AIHSLQ+++R SFQ++++ N +K   + + N  K+QG+DELS+VA EMVRLIET
Sbjct: 557  EDVEMDAIHSLQLILRGSFQDIDDSN-TKTMIHARLNDLKLQGLDELSTVASEMVRLIET 615

Query: 627  ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
            ATAPI  VD  G INGWN KVAELTGL    AMGKSL  E+VHEES+  VE ++  AL G
Sbjct: 616  ATAPILAVDGQGLINGWNGKVAELTGLSFETAMGKSLAKELVHEESKTIVERVLHLALEG 675

Query: 687  EEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIR 746
            EE++++E+ LR ++  KQ  VV ++VN C SRD  NNV GVCFVGQD+T +K+++D+FIR
Sbjct: 676  EEEQDIEIHLRTYDQHKQKGVVILIVNTCCSRDVSNNVVGVCFVGQDVTGQKLVLDRFIR 735

Query: 747  LQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------ 794
            +QGDY+AI+QS+NPLIPPIF +DE   CSEWNAAMEK++ W R EV+G            
Sbjct: 736  IQGDYKAIVQSLNPLIPPIFGADEYGFCSEWNAAMEKLSNWRREEVLGKMLVGEIFGLQM 795

Query: 795  ---------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                 + GQ +E FP  F++R G+ VE  L AS+RTDA+G++ G
Sbjct: 796  VCCRLQGQDVVTKLMIVLNDAVNGQESEKFPLVFYDRNGRRVEALLIASKRTDADGRITG 855

Query: 834  CFCFMQILVPDL-QPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSI 892
             FCF+    P+L Q  +  +  E +D     KEL+Y+++E+K PL G+ F   +LE +++
Sbjct: 856  VFCFLHTASPELLQALIIKRAKEKVD-----KELSYVKEELKKPLEGLAFTRTVLEGTNL 910

Query: 893  SENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLR 952
            +  QRQ ++T+  CERQ+  I++  DL  IEEG M+L+  EF +G+++DAV+SQ M   R
Sbjct: 911  TIEQRQLIKTNAWCERQLRKILED-DLNNIEEGYMDLEMSEFFMGSVIDAVISQGMAASR 969

Query: 953  DKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPD----GWVEIKVLPGL 1008
             K + +L +IP ++K + L GD+ RLQ VL+D L C + HA + +     WV IKV    
Sbjct: 970  GKGVQILTEIPNDVKLMCLFGDQARLQQVLADLLFCAINHATTTNEDEKDWVTIKVSRTK 1029

Query: 1009 KLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRV 1068
              + D    +H + R++H G+GI   L+E+M N   +WT PEGL + +S  L+ +MNG V
Sbjct: 1030 TRLDDGVHLMHFESRISHSGQGISEALVEEMTNKSQKWT-PEGLAISISCTLIRLMNGDV 1088

Query: 1069 RYVRE-NSKCYFV 1080
            +Y  +  +KC+ V
Sbjct: 1089 KYTTDAGNKCFLV 1101


>gi|158322018|gb|ABW33488.1| phytochrome P [Pinus sylvestris]
          Length = 864

 Score = 1197 bits (3098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/866 (67%), Positives = 691/866 (79%), Gaps = 49/866 (5%)

Query: 58  SGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCL 117
           SGKSF+Y+RS+ S  E VPE+QITAYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +
Sbjct: 3   SGKSFDYTRSIKSTTESVPEQQITAYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAV 62

Query: 118 EMLDLRSRS----EDFELNGL-IGIDARTLFTPPSGASLAKAAASREISLLNPILVH-SN 171
           EMLDL  +S    E  + + L IG D RTLFT  S  SL KAA ++EISL+NPI VH  N
Sbjct: 63  EMLDLAPQSVPSMEKPQQDVLTIGTDVRTLFTAASAHSLEKAAVAQEISLMNPIWVHCKN 122

Query: 172 SRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDI 231
           SR   KPFYAI+HRIDVG+VIDLEP ++GD  +S AGAVQSQKLAV AISRLQ+LP GD+
Sbjct: 123 SR---KPFYAIVHRIDVGMVIDLEPLRTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDV 179

Query: 232 GLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAAR 291
           GLLCDTVVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+R
Sbjct: 180 GLLCDTVVENVRELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASR 239

Query: 292 FLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVM 351
           FLF QNRVRMICDC A PV VIQS+EL QPLCLV STLR+PHGCH QYM NMGSIASLVM
Sbjct: 240 FLFMQNRVRMICDCMATPVKVIQSEELMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVM 299

Query: 352 AVIINSKD---------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402
           AVIIN  D         SMKLWGLVVCHHTSPR +PFPLRYACEFL+QA  LQL MELQ+
Sbjct: 300 AVIINGNDDEGGGSGRNSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQALGLQLNMELQL 359

Query: 403 AMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPT 462
           A QL EK+ILRTQ LLCDMLLRDAP  IVTQSPSI DLVKCDGAALYYGG CW++GVTPT
Sbjct: 360 AAQLTEKHILRTQTLLCDMLLRDAPMGIVTQSPSIKDLVKCDGAALYYGGMCWMLGVTPT 419

Query: 463 ESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRS 522
           E+Q+KDIA WLL +HGD TGLSTDSLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRS
Sbjct: 420 EAQIKDIADWLLEHHGDSTGLSTDSLADAGYPGAASLGDAVCGMASARITSKDFLFWFRS 479

Query: 523 HTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMR 582
           HTAKE+KWGGAKHHP+ KD+  +MHPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R
Sbjct: 480 HTAKEMKWGGAKHHPDDKDDARRMHPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILR 539

Query: 583 DSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTING 642
            SF+++++   +K   +++ N  ++QG+DELSSVA EMVRLIETATAPI  VD +G +NG
Sbjct: 540 GSFRDIDDSG-TKTMVHSRLNDLRLQGIDELSSVASEMVRLIETATAPILAVDYNGLVNG 598

Query: 643 WNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQ 702
           WNAKVAELTGLP  EAMG SL+ ++V E+S   VE ++  AL GEE+KNVE+ L+ F  Q
Sbjct: 599 WNAKVAELTGLPVGEAMGMSLVQDLVFEQSVERVEKMLHNALRGEEEKNVEMMLKTFGPQ 658

Query: 703 KQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLI 762
           K+   V ++VNAC+SRD+ +N+ GVCFVGQD+T +KV+MDKFIR+QGDY +I+QS NPLI
Sbjct: 659 KEKEAVILVVNACSSRDFTDNIVGVCFVGQDVTSQKVVMDKFIRIQGDYRSIVQSPNPLI 718

Query: 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIG---------------------------- 794
           PPIFASDE ACCSEWNAAMEKVTGW+  EVIG                            
Sbjct: 719 PPIFASDEYACCSEWNAAMEKVTGWIHDEVIGKMPVGEIFGGCCRLKGQDAVTKFTIVLH 778

Query: 795 --ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQ 852
             I GQ  E FPF FF++QG++VE  LTA++RTDA+G++ G FCF+QI   +LQ ALE Q
Sbjct: 779 SAIDGQEIEKFPFAFFDKQGKYVEALLTANKRTDADGRITGSFCFLQIASSELQHALEVQ 838

Query: 853 GLEDMDIYAKIKELAYIRQEVKNPLN 878
             ++   +A++KELAYIRQE+KNPL+
Sbjct: 839 RQQEKKCFARLKELAYIRQEIKNPLH 864


>gi|183239026|gb|ACC60971.1| phytochrome C [Vitis riparia]
          Length = 1123

 Score = 1149 bits (2973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/1119 (51%), Positives = 767/1119 (68%), Gaps = 61/1119 (5%)

Query: 17   HNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPE 73
            + T   +SS A+ K    G  ++     DA L   FE+S    + F+YS S+   IS   
Sbjct: 7    NKTNCSRSSSARSK---HGARVVAQTPIDAQLHVNFEES---ERHFDYSASIDFNISSST 60

Query: 74   G-VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDF 129
            G VP   ++AYL K+QRG LIQPFGCM+AV+E    ++ YSEN  EMLDL      S + 
Sbjct: 61   GDVPSSTVSAYLQKMQRGNLIQPFGCMIAVDEQNLTVLAYSENAPEMLDLAPHAVPSIEQ 120

Query: 130  ELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVG 189
            +    IG D RTLF     A+L KAA   E++LLNPILVH   R+  KPFYAILHRIDVG
Sbjct: 121  QEALAIGTDVRTLFRSSGAAALQKAANFGEVNLLNPILVHC--RNSGKPFYAILHRIDVG 178

Query: 190  IVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYD 249
            ++IDLEP    D  ++ AGA++S KLA  AISRLQ+LP G+I LLCD +V++  +LTGYD
Sbjct: 179  LIIDLEPVNPADVPITAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVKEASELTGYD 238

Query: 250  RVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIP 309
            RVM+Y FH+D+HGEV++E R+ DLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A P
Sbjct: 239  RVMVYKFHEDEHGEVIAECRKPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLAPP 298

Query: 310  VMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS--------- 360
            V VIQ+K L QPL L  STLRSPHGCH QYM NMGS+ASLVM+V IN +D          
Sbjct: 299  VKVIQNKRLAQPLSLCGSTLRSPHGCHAQYMANMGSVASLVMSVTINEEDDDTESEQQKG 358

Query: 361  MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCD 420
             KLWGLVVCH+TSPR++PFPLRYACEFLVQ F +Q+  E+++A Q+ EK+IL+TQ +LCD
Sbjct: 359  RKLWGLVVCHNTSPRFVPFPLRYACEFLVQVFGVQISKEMELAAQMKEKHILQTQTVLCD 418

Query: 421  MLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDC 480
            MLLRDAP  IVTQSP++MDLV+CDGAALYY  + WL+GVTPTE+Q++DI  WLL  H   
Sbjct: 419  MLLRDAPVGIVTQSPNVMDLVRCDGAALYYQKKFWLLGVTPTEAQIRDIVEWLLEYHSGS 478

Query: 481  TGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHK 540
            TGLSTDSL EAGYP A +LG AVCG+A  +I S DFLFWFRSHTAKE+KWGGAKH P+ K
Sbjct: 479  TGLSTDSLMEAGYPAALVLGDAVCGIAAVKINSNDFLFWFRSHTAKEIKWGGAKHDPDDK 538

Query: 541  DNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNT 600
            D+G KMHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R S Q+ +  +DSK+  N 
Sbjct: 539  DDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSLQD-KSADDSKMIVNV 597

Query: 601  QQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMG 660
                + ++  D+L  V  EMVRLIETA+ PI  VD++G INGWN K AELTGL   +A+G
Sbjct: 598  PSVDASIKMADDLRIVTNEMVRLIETASVPILAVDAAGCINGWNNKAAELTGLIMQQAIG 657

Query: 661  KSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDY 720
              LID +V  +S   V+ ++  AL G E++NVE+KL+ F  Q+ +  V ++VNAC SRD 
Sbjct: 658  MPLID-LVENDSADMVKKMLSMALQGIEEQNVEIKLKTFGPQENNGPVILVVNACCSRDI 716

Query: 721  KNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAA 780
            K+NV GVCFVGQDIT +K++MDK+ R+QGDY  I+++ + LIPPIF  DE+  C EWN A
Sbjct: 717  KDNVVGVCFVGQDITGQKMVMDKYTRIQGDYVGIVRNPSALIPPIFMMDEHGRCLEWNDA 776

Query: 781  MEKVTGWMRHEVI---------------------------------GITGQGTENFPFGF 807
            M+ ++G  R E                                    I GQ  +   FGF
Sbjct: 777  MQNLSGLKREEATDRMLLGEVFTVNNFGCQVKDHDTLTKLRILLNGAIAGQDAQKLLFGF 836

Query: 808  FNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELA 867
            F++ G+++E  L+A++RTDAEGK+ G  CF+ +  P+LQ A++ Q + +      +K+LA
Sbjct: 837  FDQHGKYIEALLSANKRTDAEGKITGVLCFLHVASPELQHAMQVQRISEQAAADSLKKLA 896

Query: 868  YIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNM 927
            YIRQ+++ PLNGI F+  L++SS +S++Q+++L TS  C+ Q+  I+D  DL  IEE  M
Sbjct: 897  YIRQQIRKPLNGIMFIQNLMDSSELSQDQKKFLRTSMMCQEQLTKIVDDTDLESIEECYM 956

Query: 928  ELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLH 987
            EL S EF LG +L+ V+SQ M+L R++ + +++D P E+ ++ L GD +RLQ VLSDFL 
Sbjct: 957  ELNSAEFNLGEVLEVVISQAMILSRERRVEIIYDSPAEVSSMFLYGDNLRLQQVLSDFLT 1016

Query: 988  CVVRHAPSPDG-WVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQW 1046
              +   P+ +G  V ++V+P  + I      VH++FR+ HP  GIP  LI+ M++ R Q 
Sbjct: 1017 NALLFTPAFEGSSVALRVIPRRESIGTKVHIVHLEFRIAHPAPGIPEDLIQQMFHHR-QG 1075

Query: 1047 TTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             + EGLGL +++KL+ +MNG V+Y+RE     F+I +E 
Sbjct: 1076 VSREGLGLYINQKLVKIMNGTVQYLREAQGSSFIILIEF 1114


>gi|225447543|ref|XP_002268724.1| PREDICTED: phytochrome C [Vitis vinifera]
          Length = 1118

 Score = 1138 bits (2943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/1119 (51%), Positives = 766/1119 (68%), Gaps = 61/1119 (5%)

Query: 17   HNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV----ISPP 72
            + T   +SS A+ K    G  ++     DA L   FE+S    + F+YS SV     S  
Sbjct: 7    NKTNCSRSSSARSK---HGARVVAQTPIDAQLHVNFEES---ERHFDYSASVDFNISSST 60

Query: 73   EGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDF 129
              VP   ++AYL K+QRG LIQPFGCM+AV+E    ++ YSEN  EMLDL      S + 
Sbjct: 61   SDVPSSTVSAYLQKMQRGNLIQPFGCMIAVDEQNLTVLAYSENAPEMLDLAPHAVPSIEQ 120

Query: 130  ELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVG 189
            +    IG D RTLF     A+L KAA   E++LLNPILVH   R+  KPFYAILHRIDVG
Sbjct: 121  QEALAIGTDVRTLFRSSGAAALQKAANFGEVNLLNPILVHC--RNSGKPFYAILHRIDVG 178

Query: 190  IVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYD 249
            ++IDLEP    D  ++ AGA++S KLA  AISRLQ+LP G+I LLCD +V++  +LTGYD
Sbjct: 179  LIIDLEPVNPADVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVKEASELTGYD 238

Query: 250  RVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIP 309
            RVM+Y FH+D+HGEV++E R+ DLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A P
Sbjct: 239  RVMVYKFHEDEHGEVIAECRKPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLAPP 298

Query: 310  VMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS--------- 360
            V VIQ+K L QPL L  STLRSPHGCH QYM NMGS+ASLVM+V IN +D          
Sbjct: 299  VKVIQNKRLAQPLSLCGSTLRSPHGCHAQYMANMGSVASLVMSVTINEEDDDTESEQQKG 358

Query: 361  MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCD 420
             KLWGLVVCH+TSPR++PFPLRYACEFLVQ F +Q+  E+++A Q+ EK+IL+TQ +LCD
Sbjct: 359  RKLWGLVVCHNTSPRFVPFPLRYACEFLVQVFGVQISKEMELAAQMKEKHILQTQTVLCD 418

Query: 421  MLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDC 480
            MLLRDAP  IVTQSP++MDLV+CDGAALYY  + WL+GVTPTE+Q++DI  WLL  H   
Sbjct: 419  MLLRDAPVGIVTQSPNVMDLVRCDGAALYYQKKFWLLGVTPTEAQIRDIVEWLLEYHSGS 478

Query: 481  TGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHK 540
            TGLSTDSL EAGYP A++LG AVCG+A  +I S DFLFWFRSHTAKE+KWGGAKH P+ K
Sbjct: 479  TGLSTDSLMEAGYPAASVLGDAVCGIAAVKINSNDFLFWFRSHTAKEIKWGGAKHDPDDK 538

Query: 541  DNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNT 600
            D+G KMHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R S Q+ +  +DSK+  N 
Sbjct: 539  DDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSLQD-KSADDSKMIVNV 597

Query: 601  QQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMG 660
                + ++  D+L  V  EMVRLIETA+ PI  VD++G INGWN K AELTGL   +A+G
Sbjct: 598  PSVDASIKMADDLRIVTNEMVRLIETASVPILAVDAAGCINGWNNKAAELTGLIMQQAIG 657

Query: 661  KSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDY 720
              LI+ +V  +S   V+ ++  AL G E++NVE+KL+ F  Q+ +  V ++VNAC SRD 
Sbjct: 658  MPLIN-LVENDSADMVKKMLSMALQGIEEQNVEIKLKTFGPQENNGPVILVVNACCSRDI 716

Query: 721  KNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAA 780
            K+NV GVCFVGQDIT +K++MDK+ R+QGDY  I+++ + LIPPIF  DE+  C EWN A
Sbjct: 717  KDNVVGVCFVGQDITGQKMVMDKYTRIQGDYVGIVRNPSALIPPIFMMDEHGRCLEWNDA 776

Query: 781  MEKVTGWMRHEVI---------------------------------GITGQGTENFPFGF 807
            M+ ++G  R E                                    I GQ  +   FGF
Sbjct: 777  MQNLSGLKREEATDRMLLGEVFTVNNFGCQVKDHDTLTKLRILLNGAIAGQDAQKLLFGF 836

Query: 808  FNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELA 867
            F++ G+++E  L+A++RTDAEGK+ G  CF+ +  P+LQ A++ Q + +      +K+LA
Sbjct: 837  FDQHGKYIEALLSANKRTDAEGKITGVLCFLHVASPELQHAMQVQRISEQAAADSLKKLA 896

Query: 868  YIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNM 927
            YIRQ+++ PLNGI F+  L++SS +S++Q+++L TS  C+ Q+  I+D  DL  IEE  M
Sbjct: 897  YIRQQIRKPLNGIMFIQNLMDSSELSQDQKKFLRTSMMCQEQLTKIVDDTDLESIEECYM 956

Query: 928  ELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLH 987
            EL S EF LG +L+ V+SQ M+L R++ + +++D P E+ ++ L GD +RLQ VLSDFL 
Sbjct: 957  ELNSGEFNLGEVLEVVISQAMILSRERRVEIIYDSPAEVSSMLLYGDNLRLQQVLSDFLT 1016

Query: 988  CVVRHAPSPDG-WVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQW 1046
              +   P+ +G  V ++V+P  + I      VH++FR+ HP  GIP  LI+ M++  +Q 
Sbjct: 1017 NALLFTPAFEGSSVALRVIPRRECIGTKVHIVHLEFRIAHPAPGIPEDLIQQMFH-HSQG 1075

Query: 1047 TTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             + EGLGL +++KL+ +MNG V+Y+RE     F+I +E 
Sbjct: 1076 VSREGLGLYINQKLVKIMNGTVQYLREAQGSSFIILIEF 1114


>gi|183239018|gb|ACC60967.1| phytochrome C [Vitis vinifera]
          Length = 1118

 Score = 1137 bits (2942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/1119 (51%), Positives = 767/1119 (68%), Gaps = 61/1119 (5%)

Query: 17   HNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV----ISPP 72
            + T   +SS A+ K    G  ++     DA L   FE+S    + F+YS SV     S  
Sbjct: 7    NKTNCSRSSSARSK---HGARVVAQTPIDAQLHVNFEES---ERHFDYSASVDFNISSST 60

Query: 73   EGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDF 129
              VP   ++AYL K+QRG LIQPFGCM+AV+E    ++ YSEN  EMLDL      S + 
Sbjct: 61   SDVPSSTVSAYLQKMQRGNLIQPFGCMIAVDEQNLTVLAYSENAPEMLDLAPHAVPSIEQ 120

Query: 130  ELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVG 189
            +    IG D RTLF     A+L KAA   E++LLNPILVH   R+  KPFYAILHRIDVG
Sbjct: 121  QEALAIGTDVRTLFRSSGAAALQKAANFGEVNLLNPILVHC--RNSGKPFYAILHRIDVG 178

Query: 190  IVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYD 249
            ++IDLEP    D  ++ AGA++S KLA  AISRLQ+LP G+I LLCD +V++  +LTGYD
Sbjct: 179  LIIDLEPVNPADVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVKEASELTGYD 238

Query: 250  RVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIP 309
            RVM+Y FH+D+HGEV++E R+ DLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A P
Sbjct: 239  RVMVYKFHEDEHGEVIAECRKPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLAPP 298

Query: 310  VMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS--------- 360
            V VIQ+K L QPL L  STLRSPHGCH QYM NMGS+ASLVM+V IN +D          
Sbjct: 299  VKVIQNKRLAQPLSLCGSTLRSPHGCHAQYMANMGSVASLVMSVTINEEDDDTESKQQKG 358

Query: 361  MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCD 420
             KLWGLVVCH+TSPR++PFPLRYACEFLVQ F +Q+  E+++A Q+ EK+IL+TQ +LCD
Sbjct: 359  RKLWGLVVCHNTSPRFVPFPLRYACEFLVQVFGVQISKEMELAAQMKEKHILQTQTVLCD 418

Query: 421  MLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDC 480
            MLLRDAP  IVTQSP++MDLV+CDGAALYY  + WL+GVTPTE+Q++DI  WLL +H   
Sbjct: 419  MLLRDAPVGIVTQSPNVMDLVRCDGAALYYQKKFWLLGVTPTEAQIRDIVEWLLEHHSGS 478

Query: 481  TGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHK 540
            TGLSTDSL EAGYP A++LG AVCG+A  +I S DFLFWFRSHTAKE+KWGGAKH P+ K
Sbjct: 479  TGLSTDSLMEAGYPAASVLGDAVCGIAAVKINSNDFLFWFRSHTAKEIKWGGAKHDPDDK 538

Query: 541  DNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNT 600
            D+G KMHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R S Q+ +  +DSK+  N 
Sbjct: 539  DDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSLQD-KSADDSKMIVNV 597

Query: 601  QQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMG 660
                + ++  D+L  V  EMVRLIETA+ PI  VD++G INGWN K AELTGL   +A+G
Sbjct: 598  PSVDASIKMADDLRIVTNEMVRLIETASVPILAVDAAGCINGWNNKAAELTGLIMQQAIG 657

Query: 661  KSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDY 720
              LI+ +V  +S   V+ ++  AL G E++NVE+KL+ F  Q+ +  V ++VNAC SRD 
Sbjct: 658  MPLIN-LVENDSADMVKKMLSMALQGIEEQNVEIKLKTFGPQENNGPVILVVNACCSRDI 716

Query: 721  KNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAA 780
            K+NV GVCFVGQDIT +K++MDK+ R+QGDY  I+++ + LIPPIF  DE+  C EWN A
Sbjct: 717  KDNVVGVCFVGQDITGQKMVMDKYTRIQGDYVGIVRNPSALIPPIFMMDEHGRCLEWNDA 776

Query: 781  MEKVTGWMRHEVI---------------------------------GITGQGTENFPFGF 807
            M+ ++G  R E                                    I GQ  +   FGF
Sbjct: 777  MQNLSGLKREEATDRMLLGEVFTVNNFGCQVKDHDTLTKLRILLNGAIAGQDAQKLLFGF 836

Query: 808  FNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELA 867
            F++ G+++E  L+A++RTDAEGK+ G  CF+ +  P+LQ A++ Q + +      +K+LA
Sbjct: 837  FDQHGKYIEALLSANKRTDAEGKITGVLCFLHVASPELQHAMQVQRISEQAAADSLKKLA 896

Query: 868  YIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNM 927
            YIRQ+++ P+NGI F+  L++SS +S++Q+++L TS  C+ Q+  I+D  DL  IEE  M
Sbjct: 897  YIRQQIRKPINGIMFIQNLMDSSELSQDQKKFLRTSMMCQEQLTKIVDDTDLESIEECYM 956

Query: 928  ELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLH 987
            EL S EF LG +L+ V+SQ M+L R++ + +++D P E+ ++ L GD +RLQ VLSDFL 
Sbjct: 957  ELNSGEFNLGEVLEVVISQAMILSRERRVEIIYDSPAEVSSMLLYGDNLRLQQVLSDFLT 1016

Query: 988  CVVRHAPSPDG-WVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQW 1046
              +   P+ +G  V ++V+P  + I      VH++FR+ HP  GIP  LI+ M++  +Q 
Sbjct: 1017 NALLFTPAFEGSSVALRVIPRRESIGTKVHIVHLEFRIAHPAPGIPEDLIQQMFH-HSQG 1075

Query: 1047 TTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             + EGLGL +++KL+ +MNG V+Y+RE     F+I +E 
Sbjct: 1076 VSREGLGLYINQKLVKIMNGTVQYLREAQGSSFIILIEF 1114


>gi|73760088|dbj|BAE20162.1| phytochrome [Mougeotia scalaris]
 gi|73760098|dbj|BAE20167.1| phytochrome [Mougeotia scalaris]
          Length = 1124

 Score = 1137 bits (2942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/1095 (52%), Positives = 764/1095 (69%), Gaps = 53/1095 (4%)

Query: 39   IDHYNADAGLLAEFE-QSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQ 94
            +   +ADA L   FE  S + G SF+Y++SV   ++P E +  + +TAYL ++QRG +IQ
Sbjct: 23   VTQASADAKLSTAFEVSSSSGGDSFDYTKSVTASLNPTEPLAAKSVTAYLQRMQRGSIIQ 82

Query: 95   PFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS--EDFELNGL-IGIDARTLFTPPSGASL 151
             FGCM+AVE  TFRII YSEN  EML +  +S     + N + IG D R+L +P S + +
Sbjct: 83   SFGCMMAVEPGTFRIIAYSENVSEMLGVTPQSVPTGDQQNAIGIGTDVRSLLSPSSVSVV 142

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEP-SKSGDPALSLAGAV 210
             KA A+ ++S++NPI V+S   + +KPF+AILH  DVG+VIDLEP S S D A+  AGAV
Sbjct: 143  EKAVAANDVSMMNPITVYS--LATQKPFFAILHMNDVGLVIDLEPISSSSDSAMFSAGAV 200

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QS KLA  AISRLQ+LPGGDI  LCD VVE+V++LTGYDRVM Y FHDD+HGEVV+EIRR
Sbjct: 201  QSHKLAAKAISRLQSLPGGDICGLCDVVVEEVRELTGYDRVMAYKFHDDEHGEVVAEIRR 260

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            SDLEPYLG+H+PA DIPQA+RFLF +NR+RMICDC +  V V+Q   + Q + L  ST+R
Sbjct: 261  SDLEPYLGLHYPATDIPQASRFLFIKNRIRMICDCTSPQVKVVQDSRIPQEMSLAGSTMR 320

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINSKDSM---------KLWGLVVCHHTSPRYIPFPL 381
              HGCH QYM NMGS ASLVM+V IN  + +         KLWGL+VCHH++PR+IPFP+
Sbjct: 321  GVHGCHTQYMMNMGSTASLVMSVTINDTNEIAGGPGMKGRKLWGLIVCHHSTPRHIPFPI 380

Query: 382  RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
            R ACEFL+Q F LQL ME+++A Q  EK+ILRTQ LLCDMLLRDAP  IV+QSP++MDLV
Sbjct: 381  RSACEFLMQVFGLQLNMEVELAAQHREKHILRTQTLLCDMLLRDAPMGIVSQSPNVMDLV 440

Query: 442  KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
            KCDGAAL +GGRCWL+G++PT+ Q+KDIA WL+++H D TGLSTDSL +AGYP A  LG 
Sbjct: 441  KCDGAALLFGGRCWLLGISPTQEQVKDIATWLISSHTDTTGLSTDSLVDAGYPKARELGV 500

Query: 502  AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
             VCGMA ARIT  DFLFWFR H  KEVKW GAK     +D G +MHPRSSFKAFLEVVK 
Sbjct: 501  DVCGMAAARITENDFLFWFRGHAQKEVKWAGAKDGGSEED-GSRMHPRSSFKAFLEVVKQ 559

Query: 562  RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMV 621
            RS PWE  E++AIHSLQ+++R SFQ++E++ D K+  + +     +QG++ELSSVA EMV
Sbjct: 560  RSLPWEDVEMDAIHSLQLILRGSFQDIEDKEDRKIV-HARLKEMHLQGMEELSSVASEMV 618

Query: 622  RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLIC 681
            RLIETATAPI  VD++G +NGWN K++ELTGL   E MGKSL+ ++ H  S+  VE L+ 
Sbjct: 619  RLIETATAPILAVDTAGCVNGWNFKISELTGLSIPEVMGKSLVKDLTHPSSKDTVEKLLY 678

Query: 682  RALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLM 741
             AL GEE++NVE++L+ + +Q+    V ++VNAC SRD    V GVCFV QD+T EK++ 
Sbjct: 679  MALNGEEEQNVEIRLKTWGMQQGKGPVILMVNACASRDVSEKVVGVCFVAQDVTGEKIVQ 738

Query: 742  DKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------- 794
            DKF R+QGDY  I++S N LIPPIF SDE+  C EWN AME+++G  R E IG       
Sbjct: 739  DKFTRIQGDYTTIVRSHNSLIPPIFGSDESGFCVEWNPAMERLSGVKREEAIGKMLTREL 798

Query: 795  -----------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKV 831
                                   ++   T+ FPF F++R G+ VEV LT S+R ++EG V
Sbjct: 799  FGGILRLKNVDGLTKFMIVLNAAMSSHDTDKFPFTFYDRSGKIVEVLLTTSKRCNSEGVV 858

Query: 832  IGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSS 891
             G FCF+     +LQ AL  Q   +     K KELAYIRQE++NPL+GI F    +E + 
Sbjct: 859  TGVFCFLHTASSELQQALTVQKAAERVAEVKAKELAYIRQEIQNPLDGIHFARSFMEHTV 918

Query: 892  ISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLL 951
            +SE+Q+Q +ETS  CE+Q+  I+  MDL  IE+G +EL++ EF +  ++++VVSQ M+  
Sbjct: 919  LSEDQKQLIETSATCEKQLRRILADMDLASIEKGYLELETGEFSMATVMNSVVSQGMIQS 978

Query: 952  RDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLI 1011
              KNL L  D P + K+LS+ GD++RLQ VL+DFL   V+  P P GWVEIKV P +K +
Sbjct: 979  TQKNLQLYCDTPPDFKSLSVFGDQVRLQQVLADFLLNAVQFTP-PSGWVEIKVEPVVKKL 1037

Query: 1012 KDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRN-QWTTPEGLGLKLSRKLLIMMNGRVRY 1070
                    + FR++HPGEG+P  LI+ M++  + +  + EGLGL + RKL+ +MNG V+Y
Sbjct: 1038 PGGVSVAKLDFRVSHPGEGLPEDLIDQMFDRADARVKSQEGLGLSICRKLVRLMNGEVQY 1097

Query: 1071 VRENSKCYFVIDLEL 1085
             RE  + +F++ LEL
Sbjct: 1098 RREGERNFFLLQLEL 1112


>gi|2507185|sp|P33529.2|PHY_MOUSC RecName: Full=Phytochrome
 gi|1419681|emb|CAA64796.1| phytochrome [Mougeotia scalaris]
          Length = 1124

 Score = 1135 bits (2936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/1095 (52%), Positives = 763/1095 (69%), Gaps = 53/1095 (4%)

Query: 39   IDHYNADAGLLAEFE-QSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQ 94
            +   +ADA L   FE  S + G SF+Y++SV   ++P E +  + +TAYL ++QRG +IQ
Sbjct: 23   VTQASADAKLSTAFEVSSSSGGDSFDYTKSVTASLNPTEPLAAKSVTAYLQRMQRGSIIQ 82

Query: 95   PFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGASL 151
             FGCM+AVE  TFRII YSEN  EML +  +S    D +    IG D R+L +P S + +
Sbjct: 83   SFGCMMAVEPGTFRIIAYSENVSEMLGVTPQSVPTGDHQNAIGIGTDVRSLLSPSSVSVV 142

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEP-SKSGDPALSLAGAV 210
             KA A+ ++S++NPI V+S   + +K F+AILH  DVG+VIDLEP S S D A+  AGAV
Sbjct: 143  EKAVAANDVSMMNPIAVYS--LATQKLFFAILHMNDVGLVIDLEPISSSSDSAMFSAGAV 200

Query: 211  QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
            QS KLA  AISRLQ+LPGGDI  LCD VVE+V++LTGYDRVM Y FHDD+HGEVV+EIRR
Sbjct: 201  QSHKLAAKAISRLQSLPGGDICGLCDVVVEEVRELTGYDRVMAYKFHDDEHGEVVAEIRR 260

Query: 271  SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            SDLEPYLG+H+PA DIPQA+RFLF +NR+RMICDC +  V V+Q   + Q + L  ST+R
Sbjct: 261  SDLEPYLGLHYPATDIPQASRFLFIKNRIRMICDCTSPQVKVVQDSRIPQEMSLAGSTMR 320

Query: 331  SPHGCHLQYMTNMGSIASLVMAVIINSKDSM---------KLWGLVVCHHTSPRYIPFPL 381
              HGCH QYM NMGS ASLVM+V IN  + +         KLWGL+VCHH++PR+IPFP+
Sbjct: 321  GVHGCHTQYMMNMGSTASLVMSVTINDTNEIAGGPGMKGRKLWGLIVCHHSTPRHIPFPI 380

Query: 382  RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
            R ACEFL+Q F LQL ME+++A Q  EK+ILRTQ LLCDMLLRDAP  IV+QSP++MDLV
Sbjct: 381  RSACEFLMQVFGLQLNMEVELAAQHREKHILRTQTLLCDMLLRDAPMGIVSQSPNVMDLV 440

Query: 442  KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
            KCDGAAL +GGRCWL+G++PT+ Q+KDIA WL+++H D TGLSTDSL +AGYP A  LG 
Sbjct: 441  KCDGAALLFGGRCWLLGISPTQEQVKDIATWLISSHTDTTGLSTDSLVDAGYPKARELGV 500

Query: 502  AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
             VCGMA ARIT  DFLFWFR H  KEVKW GAK     +D G +MHPRSSFKAFLEVVK 
Sbjct: 501  DVCGMAAARITENDFLFWFRGHAQKEVKWAGAKDGGSEED-GSRMHPRSSFKAFLEVVKQ 559

Query: 562  RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMV 621
            RS PWE  E++AIHSLQ+++R SFQ++E++ D K+  + +     +QG++ELSSVA EMV
Sbjct: 560  RSLPWEDVEMDAIHSLQLILRGSFQDIEDKEDRKIV-HARLKEMHLQGMEELSSVASEMV 618

Query: 622  RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLIC 681
            RLIETATAPI  VD++G +NGWN K++ELTGL   E MGKSL+ ++ H  S+  VE L+ 
Sbjct: 619  RLIETATAPILAVDTAGCVNGWNFKISELTGLSIPEVMGKSLVKDLTHPSSKDTVEKLLY 678

Query: 682  RALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLM 741
             AL GEE++NVE++L+ + +Q+    V ++VNAC SRD    V GVCFV QD+T EK++ 
Sbjct: 679  MALNGEEEQNVEIRLKTWGMQQGKGPVILMVNACASRDVSEKVVGVCFVAQDVTGEKIVQ 738

Query: 742  DKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------- 794
            DKF R+QGDY  I++S N LIPPIF SDE+  C EWN AME+++G  R E IG       
Sbjct: 739  DKFTRIQGDYTTIVRSHNSLIPPIFGSDESGFCVEWNPAMERLSGVKREEAIGKMLTREL 798

Query: 795  -----------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKV 831
                                   ++   T+ FPF F++R G+ VEV LT S+R ++EG V
Sbjct: 799  FGGILRLKNVDGLTKFMIVLNAAMSSHDTDKFPFTFYDRSGKIVEVLLTTSKRCNSEGVV 858

Query: 832  IGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSS 891
             G FCF+     +LQ AL  Q   +     K KELAYIRQE++NPL+GI F    +E + 
Sbjct: 859  TGVFCFLHTASSELQQALTVQKAAERVAEVKAKELAYIRQEIQNPLDGIHFARSFMEHTV 918

Query: 892  ISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLL 951
            +SE+Q+Q +ETS  CE+Q+  I+  MDL  IE+G +EL++ EF +  ++++VVSQ M+  
Sbjct: 919  LSEDQKQLIETSATCEKQLRRILADMDLASIEKGYLELETGEFSMATVMNSVVSQGMIQS 978

Query: 952  RDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLI 1011
              KNL L  D P + K+LS+ GD++RLQ VL+DFL   V+  P P GWVEIKV P +K +
Sbjct: 979  TQKNLQLYCDTPPDFKSLSVFGDQVRLQQVLADFLLNAVQFTP-PSGWVEIKVEPVVKKL 1037

Query: 1012 KDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRN-QWTTPEGLGLKLSRKLLIMMNGRVRY 1070
                   +V FR++HPGEG+P  LI+ M++  + +  + EGLGL + RKL+ +MNG V+Y
Sbjct: 1038 PGGVSVANVDFRVSHPGEGLPEDLIDQMFDRADARVKSQEGLGLSICRKLVRLMNGEVQY 1097

Query: 1071 VRENSKCYFVIDLEL 1085
             RE  + +F++ LEL
Sbjct: 1098 RREGERNFFLLQLEL 1112


>gi|356555999|ref|XP_003546315.1| PREDICTED: phytochrome B-like isoform 2 [Glycine max]
          Length = 867

 Score = 1133 bits (2930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/870 (62%), Positives = 675/870 (77%), Gaps = 46/870 (5%)

Query: 99  MLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAK 153
           M+AV+EP+FRI+ YS+N  +ML +  +S     +  +    +G D RTLFT  S   L K
Sbjct: 1   MIAVDEPSFRILAYSDNARDMLGITPQSVPSLDDKNDAAFALGTDIRTLFTHSSAVLLEK 60

Query: 154 AAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQ 213
           A ++REISL+NPI +HS  R+  KPFY ILHRIDVGIVIDLEP+++ DPALS+AGAVQSQ
Sbjct: 61  AFSAREISLMNPIWIHS--RTSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQ 118

Query: 214 KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL 273
           KLAV AIS+LQ+LPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E +R DL
Sbjct: 119 KLAVRAISQLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYRFHEDEHGEVVAETKRPDL 178

Query: 274 EPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPH 333
           EPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA  V V+Q + L QPLCLV STLR+PH
Sbjct: 179 EPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASAVRVVQDEALVQPLCLVGSTLRAPH 238

Query: 334 GCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYAC 385
           GCH QYM NMGS ASLVMAVIIN  D        SM+LWGLVVCHHTS R IPFPLRYAC
Sbjct: 239 GCHAQYMANMGSTASLVMAVIINGNDEEGVGGRTSMRLWGLVVCHHTSARCIPFPLRYAC 298

Query: 386 EFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDG 445
           EFL+QAF LQL MELQ+A Q  EK +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDG
Sbjct: 299 EFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDG 358

Query: 446 AALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCG 505
           AALYY G  + +GVTPTE+Q++DI  WLL  H D TGLSTDSLA+AGYPGAA LG AVCG
Sbjct: 359 AALYYQGNYYPLGVTPTEAQIRDIIEWLLAFHRDSTGLSTDSLADAGYPGAASLGDAVCG 418

Query: 506 MATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFP 565
           MA A IT KDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS P
Sbjct: 419 MAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLP 478

Query: 566 WEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
           WE +E++AIHSLQ+++RDSF++ E  N SK   + + +  ++QGVDELSSVA EMVRLIE
Sbjct: 479 WENAEMDAIHSLQLILRDSFKDAEHSN-SKAVLDPRMSELELQGVDELSSVAREMVRLIE 537

Query: 626 TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
           TATAPIF VD  G INGWNAKV+ELTGLP  EAMGKSL+ ++V +ES+  V+ L+ RAL 
Sbjct: 538 TATAPIFAVDVDGRINGWNAKVSELTGLPVEEAMGKSLVRDLVFKESEETVDKLLSRALK 597

Query: 686 GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
           GEEDKNVE+K+R F  + Q+  V+++VNAC+S+DY NNV GVCFVGQD+T +K++MDKFI
Sbjct: 598 GEEDKNVEIKMRTFGPEHQNKAVFVVVNACSSKDYTNNVVGVCFVGQDVTGQKIVMDKFI 657

Query: 746 RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
            +QGDY+AI+ + NPLIPPIFASD+N CC EWN AMEK+TGW R +VIG           
Sbjct: 658 NIQGDYKAIVHNPNPLIPPIFASDDNTCCLEWNTAMEKLTGWSRADVIGKMLVGEVFGSC 717

Query: 795 -------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCF 835
                              + G  T+ FPF F +R G+ V+  LTA++R + +G++IG F
Sbjct: 718 CQLKGSDSITKFMIVLHNALGGHDTDRFPFSFLDRYGKHVQAFLTANKRVNMDGQIIGAF 777

Query: 836 CFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISEN 895
           CF+QI+ P+LQ AL+AQ  ++ + +A++KELAYI Q VKNPL+GIRF + LLE++ +S  
Sbjct: 778 CFLQIVSPELQQALKAQRQQEKNSFARMKELAYICQGVKNPLSGIRFTNSLLEATCLSNE 837

Query: 896 QRQYLETSDACERQIMTIIDGMDLRCIEEG 925
           Q+Q+LETS ACE+Q++ II  +D+  IE+G
Sbjct: 838 QKQFLETSAACEKQMLKIIHDVDIESIEDG 867


>gi|190586169|gb|ACE79201.1| phytochrome B-4 [Glycine max]
          Length = 867

 Score = 1133 bits (2930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/870 (62%), Positives = 675/870 (77%), Gaps = 46/870 (5%)

Query: 99  MLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAK 153
           M+AV+EP+FRI+ YS+N  +ML +  +S     +  +    +G D RTLFT  S   L K
Sbjct: 1   MIAVDEPSFRILAYSDNARDMLGITPQSVPSLDDKNDAAFALGTDIRTLFTHSSAVLLEK 60

Query: 154 AAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQ 213
           A ++REISL+NPI +HS  R+  KPFY ILHRIDVGIVIDLEP+++ DPALS+AGAVQSQ
Sbjct: 61  AFSAREISLMNPIWIHS--RTSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQ 118

Query: 214 KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL 273
           KLAV AIS+LQ+LPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E +R DL
Sbjct: 119 KLAVRAISQLQSLPGGDVKLLCDTVVESVRELTGYDRVMVYRFHEDEHGEVVAETKRPDL 178

Query: 274 EPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPH 333
           EPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA  V V+Q + L QPLCLV STLR+PH
Sbjct: 179 EPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASAVRVVQDEALVQPLCLVGSTLRAPH 238

Query: 334 GCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYAC 385
           GCH QYM NMGS ASLVMAVIIN  D        SM+LWGLV+CHHTS R IPFPLRYAC
Sbjct: 239 GCHAQYMANMGSTASLVMAVIINGNDEEGVGGRTSMRLWGLVICHHTSARCIPFPLRYAC 298

Query: 386 EFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDG 445
           EFL+QAF LQL MELQ+A Q  EK +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDG
Sbjct: 299 EFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDG 358

Query: 446 AALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCG 505
           AALYY G  + +GVTPTE+Q++DI  WLL  H D TGLSTDSLA+AGYPGAA LG AVCG
Sbjct: 359 AALYYQGNYYPLGVTPTEAQIRDIIEWLLAFHRDSTGLSTDSLADAGYPGAASLGDAVCG 418

Query: 506 MATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFP 565
           MA A IT KDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS P
Sbjct: 419 MAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLP 478

Query: 566 WEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
           WE +E++AIHSLQ+++RDSF++ E  N SK   + + +  ++QGVDELSSVA EMVRLIE
Sbjct: 479 WESAEMDAIHSLQLILRDSFKDAEHSN-SKAVLDPRMSELELQGVDELSSVAREMVRLIE 537

Query: 626 TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
           TATAPIF VD  G INGWNAKV+ELTGLP  EAMGKSL+ ++V +ES+  V+ L+ RAL 
Sbjct: 538 TATAPIFAVDVDGRINGWNAKVSELTGLPVEEAMGKSLVRDLVFKESEETVDKLLSRALK 597

Query: 686 GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
           GEEDKNVE+K+R F  + Q+  V+++VNAC+S+DY NNV GVCFVGQD+T +K++MDKFI
Sbjct: 598 GEEDKNVEIKMRTFGPEHQNKAVFVVVNACSSKDYTNNVVGVCFVGQDVTGQKIVMDKFI 657

Query: 746 RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
            +QGDY+AI+ + NPLIPPIFASD+N CC EWN AMEK+TGW R +VIG           
Sbjct: 658 NIQGDYKAIVHNPNPLIPPIFASDDNTCCLEWNTAMEKLTGWSRADVIGKMLVGEVFGSC 717

Query: 795 -------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCF 835
                              + G  T+ FPF F +R G+ V+  LTA++R + +G++IG F
Sbjct: 718 CQLKGSDSITKFMIVLHNALGGHDTDRFPFSFLDRYGKHVQAFLTANKRVNMDGQIIGAF 777

Query: 836 CFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISEN 895
           CF+QI+ P+LQ AL+AQ  ++ + +A++KELAYI Q VKNPL+GIRF + LLE++ +S  
Sbjct: 778 CFLQIVSPELQQALKAQRQQEKNSFARMKELAYICQGVKNPLSGIRFTNSLLEATCLSNE 837

Query: 896 QRQYLETSDACERQIMTIIDGMDLRCIEEG 925
           Q+Q+LETS ACE+Q++ II  +D+  IE+G
Sbjct: 838 QKQFLETSAACEKQMLKIIHDVDIESIEDG 867


>gi|3724336|dbj|BAA33774.1| phytochrome 2 [Adiantum capillus-veneris]
          Length = 973

 Score = 1113 bits (2878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/938 (57%), Positives = 688/938 (73%), Gaps = 61/938 (6%)

Query: 36  KTIIDHYNADAGLLAEFEQSVA----SGKSFNYSRSVISP-----PEGVPEEQITAYLSK 86
           + ++    ADA L A FEQ+ +     G SF+Y RS+         E VP + +TAYL +
Sbjct: 30  RVVVAQTTADAKLHAVFEQAQSEGDTGGSSFDYMRSIEDARGSVLSERVPAQAVTAYLQR 89

Query: 87  IQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL---IGIDARTL 142
           +QRGGLIQPFGCMLA+EE +FR+I YSEN  EMLDL  +S     +  L   IG DARTL
Sbjct: 90  MQRGGLIQPFGCMLALEEGSFRVIAYSENAAEMLDLMPQSVPSVGVQVLVLGIGTDARTL 149

Query: 143 FTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDP 202
           FT  S A+L KA+ + ++S+LNPI VH   RS  KPF AI+HRIDVG+VID EP +  D 
Sbjct: 150 FTYASAAALEKASGAVDVSMLNPITVHC--RSSSKPFNAIVHRIDVGLVIDFEPVRPADV 207

Query: 203 AL-SLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           A+ + AGA+QS KLA  AISRLQALP GDI LLCD+VVE+V++LTGYDRVM Y FH+D+H
Sbjct: 208 AVWAAAGALQSHKLAAKAISRLQALPVGDIDLLCDSVVEEVRELTGYDRVMAYKFHEDEH 267

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF +NRVRMICDC A+PV VIQ KEL+QP
Sbjct: 268 GEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMKNRVRMICDCRALPVRVIQDKELRQP 327

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-----------MKLWGLVVCH 370
           L L  STLR+PHGCH QYM NMGSIASLVMAV++N  D             +LWGLVVCH
Sbjct: 328 LSLAGSTLRAPHGCHSQYMANMGSIASLVMAVVVNDNDEDVSNRSQQPKMRRLWGLVVCH 387

Query: 371 HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
           HT+PR +PF LR ACEFL+Q F LQL MEL++A Q+ EK+ILRTQ LLCDMLLRDAP  I
Sbjct: 388 HTTPRAVPFALRSACEFLMQVFGLQLNMELELAAQMREKHILRTQTLLCDMLLRDAPIGI 447

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           V++SP+IMDLVKCDGAALYYG   WL+G TP E+Q+KD+A WLL+ H D TGLSTDSLA+
Sbjct: 448 VSESPNIMDLVKCDGAALYYGKNFWLLGTTPIEAQIKDLAEWLLDVHRDSTGLSTDSLAD 507

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYPGAA LG AVCGMA A+IT++DFLFWFRSHTAKE+KWGGAKH PE +D+G KMHPRS
Sbjct: 508 AGYPGAAALGDAVCGMAAAKITTRDFLFWFRSHTAKEIKWGGAKHDPEDRDDGRKMHPRS 567

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGV 610
           SFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+ G+
Sbjct: 568 SFKAFLEVVKRRSLPWEDMEMDAIHSLQLILRGSFQDI-DDSDTKTMIHARLNDLKLHGM 626

Query: 611 DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
           DELS+VA EMVRLIETATAPIF VD+ G INGWNAKVAELTGL   EAM +SL+ +VV  
Sbjct: 627 DELSTVANEMVRLIETATAPIFAVDAGGFINGWNAKVAELTGLTVEEAMSRSLVRDVVVN 686

Query: 671 ESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFV 730
            S    E ++  AL G+E++NVE+KL+ +  Q     V ++VNAC+SRD+ +NV GVCFV
Sbjct: 687 ASMETAERVLDLALQGQEEQNVEIKLKTYGDQAIKGPVILIVNACSSRDFTDNVVGVCFV 746

Query: 731 GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
           GQD+T +KV+MDKF R+QGDY+ I+Q+ NPLIPPIF +DE   CSEWN AMEK +GW R 
Sbjct: 747 GQDVTGQKVVMDKFTRIQGDYKTIVQNPNPLIPPIFGADEFGYCSEWNPAMEKFSGWKRE 806

Query: 791 EVIG---------------------------------ITGQGTENFPFGFFNRQGQFVEV 817
           +VIG                                 + G+ ++ FPFGFF+R G++ E 
Sbjct: 807 DVIGKMLIGEVFGSDLACCKLRGQDSMTKFMIILNAAMGGRDSDRFPFGFFDRYGKYAEA 866

Query: 818 ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPL 877
            L A++RTD++G + G FCF+    P+LQ AL+ Q         ++KE+AY++QE++NPL
Sbjct: 867 LLIANKRTDSDGAITGVFCFLHTASPELQQALQVQKRSARTALDRLKEVAYMKQEIRNPL 926

Query: 878 NGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID 915
            GI F  KLL+++++++ Q+Q +ETS  CE+Q+  I+D
Sbjct: 927 YGIVFTRKLLDNTNLTDEQKQIMETSSLCEKQLQNILD 964


>gi|51556875|gb|AAU06208.1| phytochrome C [Triticum aestivum]
 gi|51556889|gb|AAU06215.1| phytochrome C [Triticum aestivum]
          Length = 1139

 Score = 1092 bits (2824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1103 (50%), Positives = 733/1103 (66%), Gaps = 63/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV--ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            ++     DA L AEFE    S + F+YS SV  ++         ++AYL  +QRG  IQP
Sbjct: 26   VVAQTPVDARLHAEFE---GSHRHFDYSSSVSALNRSGASTSSAVSAYLQNMQRGRYIQP 82

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASLA 152
            FGC+LA+   +F ++ YSEN  EMLDL   +    D      +G D RTLF   S  +L 
Sbjct: 83   FGCLLAIHPESFALLAYSENAAEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSAVALH 142

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++S
Sbjct: 143  KAAVFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKS 200

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
             KLA  AISRLQ+LPGG++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV++E RRSD
Sbjct: 201  YKLAAKAISRLQSLPGGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVIAECRRSD 260

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A PV +IQ   L QP+ L  ST+R+P
Sbjct: 261  LEPYLGLHYPATDIPQASRFLFMKNKVRMICDCAASPVKLIQDDNLSQPISLCGSTMRAP 320

Query: 333  HGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPRYIPF 379
            HGCH QYM NMGSIASLVM++ IN  +               KLWGLVVCHHTSPR++PF
Sbjct: 321  HGCHAQYMANMGSIASLVMSITINEDEDEDGDTGSDQQPKGRKLWGLVVCHHTSPRFVPF 380

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++MD
Sbjct: 381  PLRYACEFLLQVFGIQLNKEVELASQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVMD 440

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAAL Y  +  ++G TP+E ++K I  WLL  H   TGLSTDSL EAGYPGA+ L
Sbjct: 441  LVKCDGAALCYQNQIMVLGSTPSEGEIKKIVAWLLECHDGSTGLSTDSLLEAGYPGASAL 500

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLEV 558
            G+ VCGMA  +I+SK F+FWFRSHTAKE+KWGGAKH P +  DNG +MHPRSSF+AFLEV
Sbjct: 501  GEVVCGMAAIKISSKGFIFWFRSHTAKEIKWGGAKHEPGDADDNGRRMHPRSSFRAFLEV 560

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELSS 615
            VK RS PWE  E++AIHSLQ+++R S Q+ E+ ND+  +   +    +  K+QG+ EL  
Sbjct: 561  VKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANDNTARSIVEAPSDDIKKIQGLLELKI 619

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETATAPI  VD  G INGWN KVAE+TGLP +EA+G  L+D +V  +S   
Sbjct: 620  VTNEMVRLIETATAPILAVDIVGNINGWNNKVAEITGLPTTEAIGMLLVD-LVEGDSVEV 678

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+ ++  AL G E++N+E+KL+ F  Q+    V ++VNAC SRD  + V GVCFV QD+T
Sbjct: 679  VKQMLNSALQGTEEQNLEIKLKTFHQQESKGPVVLMVNACCSRDLSDKVVGVCFVAQDLT 738

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG- 794
              K++MDK+ R+QGDY AI+++ N LIPPIF  ++   C EWN AM+K+TG  R + I  
Sbjct: 739  GHKMVMDKYTRIQGDYVAIVKNPNELIPPIFMINDLGSCLEWNEAMQKITGIKREDAIDK 798

Query: 795  --------------------------------ITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            I+GQ  E   FGFFN  G+++E  LTA+
Sbjct: 799  LLIGEVFTLHDYGCRVKDQVTLTKLSILMNTVISGQEPEKLAFGFFNTNGKYMESLLTAN 858

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YIRQE+KNPLNG++F
Sbjct: 859  KRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAATHSFKELTYIRQELKNPLNGMQF 918

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              KLLE S ++E QRQ   ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+ 
Sbjct: 919  TRKLLEPSDLTEEQRQLFASNVLCQEQLKKILHDNDLEGIEQCYMEMNTVEFNLEEALNT 978

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
            V+ Q M L ++K + L  D P E+ ++ L GD +RLQ VL+D+L C ++     +G + +
Sbjct: 979  VLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVL 1038

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
            +V+P  + I    Q  H++FRL HP  G+P  LI++M+       + EGLGL +S+KL+ 
Sbjct: 1039 QVIPKKEHIGSGMQIAHLEFRLVHPAPGVPEALIQEMFR-HGPGVSREGLGLHISQKLVK 1097

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
             M+G V+Y+RE     F++ +E 
Sbjct: 1098 TMSGTVQYLREAESSSFIVLVEF 1120


>gi|115455391|ref|NP_001051296.1| Os03g0752100 [Oryza sativa Japonica Group]
 gi|122246759|sp|Q10CQ8.1|PHYC_ORYSJ RecName: Full=Phytochrome C
 gi|21070927|gb|AAM34402.1|AF377947_8 phytochrome C [Oryza sativa Japonica Group]
 gi|4190974|dbj|BAA74448.1| phytochrome C [Oryza sativa Japonica Group]
 gi|31712054|gb|AAP68360.1| phytochrome C [Oryza sativa Japonica Group]
 gi|40538982|gb|AAR87239.1| phytochrome C [Oryza sativa Japonica Group]
 gi|108711120|gb|ABF98915.1| Phytochrome C, putative, expressed [Oryza sativa Japonica Group]
 gi|113549767|dbj|BAF13210.1| Os03g0752100 [Oryza sativa Japonica Group]
 gi|125587941|gb|EAZ28605.1| hypothetical protein OsJ_12592 [Oryza sativa Japonica Group]
          Length = 1137

 Score = 1091 bits (2822), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/1117 (48%), Positives = 740/1117 (66%), Gaps = 64/1117 (5%)

Query: 23   KSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPPEGVPEEQIT 81
            +SS A+ K       ++     DA L AEFE    S + F+YS SV  +   G     ++
Sbjct: 14   RSSSARSK---HSARVVAQTPMDAQLHAEFE---GSQRHFDYSSSVGAANRSGATTSNVS 67

Query: 82   AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGID 138
            AYL  +QRG  +QPFGC+LAV   TF ++ YSEN  EMLDL   +    D      +G D
Sbjct: 68   AYLQNMQRGRFVQPFGCLLAVHPETFALLAYSENAAEMLDLTPHAVPTIDQREALAVGTD 127

Query: 139  ARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSK 198
             RTLF   S  +L KAA   +++LLNPILVH+  R+  KPFYAI+HRIDVG+VIDLEP  
Sbjct: 128  VRTLFRSHSFVALQKAATFGDVNLLNPILVHA--RTSGKPFYAIMHRIDVGLVIDLEPVN 185

Query: 199  SGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHD 258
              D  ++  GA++S KLA  AI+RLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+
Sbjct: 186  PVDLPVTATGAIKSYKLAARAIARLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHE 245

Query: 259  DDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKEL 318
            D+HGEV++E +RSDLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A PV +IQ   L
Sbjct: 246  DEHGEVIAECKRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATPVKIIQDDSL 305

Query: 319  KQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSM-------------KLWG 365
             QP+ +  STLR+PHGCH QYM +MGS+ASLVM+V IN  +               KLWG
Sbjct: 306  TQPISICGSTLRAPHGCHAQYMASMGSVASLVMSVTINEDEDDDGDTGSDQQPKGRKLWG 365

Query: 366  LVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRD 425
            L+VCHHTSPR++PFPLRYACEFL+Q F +Q+  E+++A Q  E++ILRTQ LLCDMLLRD
Sbjct: 366  LMVCHHTSPRFVPFPLRYACEFLLQVFGIQINKEVELAAQAKERHILRTQTLLCDMLLRD 425

Query: 426  APFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLST 485
            AP  I TQSP++MDLVKCDGAALYY  + W++G TP+E+++K+I  WL   H   TGLST
Sbjct: 426  APVGIFTQSPNVMDLVKCDGAALYYQNQLWVLGSTPSEAEIKNIVAWLQEYHDGSTGLST 485

Query: 486  DSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGG 544
            DSL EAGYPGAA LG  VCGMA  +I+SKDF+FWFRSHTAKE+KWGGAKH P +  DNG 
Sbjct: 486  DSLVEAGYPGAAALGDVVCGMAAIKISSKDFIFWFRSHTAKEIKWGGAKHEPIDADDNGR 545

Query: 545  KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME---EENDSKVQGNTQ 601
            KMHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R S Q+ +     N   +     
Sbjct: 546  KMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANKNNNAKSIVTAPS 605

Query: 602  QNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGK 661
             +  K+QG+ EL +V  EMVRLIETATAPI  VD +G+INGWN K AELTGLP  EA+GK
Sbjct: 606  DDMKKIQGLLELRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPVMEAIGK 665

Query: 662  SLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYK 721
             L+D V+ ++S   V+ ++  AL G E++N+++KL+ F  Q+ +  V ++VNAC SRD  
Sbjct: 666  PLVDLVI-DDSVEVVKQILNSALQGIEEQNLQIKLKTFNHQENNGPVILMVNACCSRDLS 724

Query: 722  NNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAM 781
              V GVCFV QD+T + ++MDK+ R+QGDY AI+++ + LIPPIF  ++   C EWN AM
Sbjct: 725  EKVVGVCFVAQDMTGQNIIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNEAM 784

Query: 782  EKVTGWMRHEVIG---------------------------------ITGQGTENFPFGFF 808
            +K+TG  R + +                                  I+GQ  E   FGFF
Sbjct: 785  QKITGIKREDAVDKLLIGEVFTHHEYGCRVKDHGTLTKLSILMNTVISGQDPEKLLFGFF 844

Query: 809  NRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAY 868
            N  G+++E  +TA++RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL Y
Sbjct: 845  NTDGKYIESLMTATKRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAAMNSFKELTY 904

Query: 869  IRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNME 928
            IRQE++NPLNG++F   LLE S ++E QR+ L ++  C+ Q+  I+   DL  IE+   E
Sbjct: 905  IRQELRNPLNGMQFTRNLLEPSDLTEEQRKLLASNVLCQEQLKKILHDTDLESIEQCYTE 964

Query: 929  LKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHC 988
            + + +F L   L+ V+ Q M   ++K + +  D P E+  + L GD +RLQ VL+DFL C
Sbjct: 965  MSTVDFNLEEALNTVLMQAMPQSKEKQISIDRDWPAEVSCMHLCGDNLRLQQVLADFLAC 1024

Query: 989  VVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTT 1048
            +++     +G + ++V+P ++ I    Q  H++FRL HP  G+P  LI++M+   +   +
Sbjct: 1025 MLQFTQPAEGPIVLQVIPRMENIGSGMQIAHLEFRLVHPAPGVPEALIQEMFR-HSPGAS 1083

Query: 1049 PEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             EGLGL +S+KL+  M+G V+Y+RE+    F++ +E 
Sbjct: 1084 REGLGLYISQKLVKTMSGTVQYLRESESSSFIVLVEF 1120


>gi|7672696|gb|AAF66603.1|AF141942_1 phytochrome C [Oryza sativa Indica Group]
          Length = 1137

 Score = 1091 bits (2821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/1117 (48%), Positives = 738/1117 (66%), Gaps = 64/1117 (5%)

Query: 23   KSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPPEGVPEEQIT 81
            +SS A+ K       ++     DA L AEFE    S + F+YS SV  +   G     ++
Sbjct: 14   RSSSARSK---HSARVVAQTPMDAQLHAEFE---GSQRHFDYSSSVGAANRSGATTSNVS 67

Query: 82   AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGID 138
            AYL  +QRG  +QPFGC+LAV   TF ++ YSEN  EMLDL   +    D      +G D
Sbjct: 68   AYLQNMQRGRFVQPFGCLLAVHPETFALLAYSENAAEMLDLTPHAVPTIDQREALAVGTD 127

Query: 139  ARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSK 198
             RTLF   S  +L KAA   +++LLNPILVH+  R+  KPFYAI+HRIDVG+VIDLEP  
Sbjct: 128  VRTLFRSHSFVALQKAATFGDVNLLNPILVHA--RTSGKPFYAIMHRIDVGLVIDLEPVN 185

Query: 199  SGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHD 258
              D  ++  GA++S KLA  AI+RLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+
Sbjct: 186  PVDLPVTATGAIKSYKLAARAIARLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHE 245

Query: 259  DDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKEL 318
            D+HGEV++E +RSDLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A PV +IQ   L
Sbjct: 246  DEHGEVIAECKRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATPVKIIQDDSL 305

Query: 319  KQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSM-------------KLWG 365
             QP+ +  STLR+PHGCH QYM +MGS+ASLVM+V IN  +               KLWG
Sbjct: 306  TQPISICGSTLRAPHGCHAQYMASMGSVASLVMSVTINEDEDDDGDTGSDQQPKGRKLWG 365

Query: 366  LVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRD 425
            L+VCHHTSPR++PFPLRYACEFL+Q F +Q+  E+++A Q  E++ILRTQ LLCDMLLRD
Sbjct: 366  LMVCHHTSPRFVPFPLRYACEFLLQVFGIQINKEVELAAQAKERHILRTQTLLCDMLLRD 425

Query: 426  APFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLST 485
            AP  I TQSP++MDLVKCDGAALYY  + W++G TP+E+++K+I  WL   H   TGLST
Sbjct: 426  APVGIFTQSPNVMDLVKCDGAALYYQNQLWVLGSTPSEAEIKNIVAWLQEYHDGSTGLST 485

Query: 486  DSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGG 544
            DSL EAGYPGAA LG  VCGMA  +I+SKDF+FWFRSHTAKE+KWGGAKH P +  DNG 
Sbjct: 486  DSLVEAGYPGAAALGDVVCGMAAIKISSKDFIFWFRSHTAKEIKWGGAKHEPIDADDNGR 545

Query: 545  KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME---EENDSKVQGNTQ 601
            KMHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R S Q+ +     N   +     
Sbjct: 546  KMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANKNNNAKSIVTAPS 605

Query: 602  QNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGK 661
             +  K+QG+ EL +V  EMVRLIETATAPI  VD +G+INGWN K AELTGLP  EA+GK
Sbjct: 606  DDMKKIQGLLELRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPVMEAIGK 665

Query: 662  SLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYK 721
             L+D V+ ++S   V+ ++  AL G E++N+++KL+ F  Q+ +  V ++VNAC SRD  
Sbjct: 666  PLVDLVI-DDSVEVVKQILNSALQGIEEQNLQIKLKTFNHQENNGPVILMVNACCSRDLS 724

Query: 722  NNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAM 781
              V GVCFV QD+T + ++MDK+ R+QGDY AI+++ + LIPPIF  ++   C EWN AM
Sbjct: 725  EKVVGVCFVAQDMTGQNIIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNEAM 784

Query: 782  EKVTGWMRHEVIG---------------------------------ITGQGTENFPFGFF 808
            +K+TG  R + +                                  I+GQ  E   FGFF
Sbjct: 785  QKITGIKREDAVDKLLIGEVFTHHEYGCRVKDHGTLTKLSILMNTVISGQDPEKLLFGFF 844

Query: 809  NRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAY 868
            N  G+++E  +TA++RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL Y
Sbjct: 845  NTDGKYIESLMTATKRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAAMNSFKELTY 904

Query: 869  IRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNME 928
            IRQE++NPLNG++F   LLE S ++E QR+ L ++  C+ Q+  I+   DL  IE+   E
Sbjct: 905  IRQELRNPLNGMQFTRNLLEPSDLTEEQRKLLASNVLCQEQLKKILHDTDLESIEQCYTE 964

Query: 929  LKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHC 988
            + + +F L   L+ V+ Q M   ++K + +  D P E+  + L GD +RLQ VL+DFL C
Sbjct: 965  MSTVDFNLEEALNTVLMQAMPQSKEKQISIDRDWPAEVSCMHLCGDNLRLQQVLADFLAC 1024

Query: 989  VVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTT 1048
             ++     +G + ++V+P ++ I    Q  H++FRL HP  G+P  LI++M+   +   +
Sbjct: 1025 TLQFTQPAEGPIVLQVIPRMENIGSGMQIAHLEFRLVHPAPGVPEALIQEMFR-HSPGAS 1083

Query: 1049 PEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             EGLGL +S+KL+  M+G V+Y+RE     F++ +E 
Sbjct: 1084 REGLGLYISQKLVKTMSGTVQYLREAESSSFIVLVEF 1120


>gi|6671484|gb|AAC49301.2| phytochrome F [Solanum lycopersicum]
          Length = 1118

 Score = 1090 bits (2819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1095 (50%), Positives = 732/1095 (66%), Gaps = 57/1095 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV--ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            +I     DA L  EFE+S    + F+YS SV   +    VP   ++ YL K+QRG LIQP
Sbjct: 26   VIAQTPVDAKLHVEFEES---EQQFDYSSSVNLSNSTSNVPSSTVSDYLQKMQRGSLIQP 82

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLA 152
            FGCM+A++   F +I YSEN  EMLDL      S + +     G D R LF     ++L 
Sbjct: 83   FGCMIAIDAQNFAVIAYSENAPEMLDLTPHAVPSIEQQEALTFGTDVRKLFRSSGASALE 142

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            KA +  E+SLLNPILVH  +    KPFYAILHRI+VG+VIDLEP    +  ++ AGA++S
Sbjct: 143  KAVSFGELSLLNPILVHCKNSG--KPFYAILHRIEVGLVIDLEPVDPHEVPVTTAGAIKS 200

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
             KLA  AI +LQ+LP GDI LLCD +V +V  LTGYDRVM+Y FH+D+HGEVV+E R  +
Sbjct: 201  YKLAAKAIRKLQSLPSGDISLLCDVLVREVSHLTGYDRVMVYKFHEDEHGEVVAECRTPE 260

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A P+ VIQ   L Q L L  STLR+P
Sbjct: 261  LEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLAPPIRVIQDPRLAQSLSLGGSTLRAP 320

Query: 333  HGCHLQYMTNMGSIASLVMAVIINSKDS---------MKLWGLVVCHHTSPRYIPFPLRY 383
            HGCH QYMTNMG++AS+ M+V+IN +D           KLWGLVVCHHT PR++ FPLRY
Sbjct: 321  HGCHAQYMTNMGTVASMAMSVMINEQDDELDSDQQVGRKLWGLVVCHHTCPRFLSFPLRY 380

Query: 384  ACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKC 443
            A EFL+Q FS+Q+  E+++A QL EK IL+ Q +LCDMLLRDAP  IVTQSP++MDLVKC
Sbjct: 381  ASEFLLQVFSVQVNKEVEMAAQLKEKQILQIQTVLCDMLLRDAPMGIVTQSPNVMDLVKC 440

Query: 444  DGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAV 503
            DGAALYY  + WL GVTP ESQ++DIA WL  +HGD TGL+TDSL EAG+PGA++LG AV
Sbjct: 441  DGAALYYRNKLWLHGVTPAESQIRDIAEWLNESHGDSTGLNTDSLMEAGFPGASVLGDAV 500

Query: 504  CGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRS 563
            CGMA  +ITSKDFLFWFRSHTAKE+KWGGAKH P  KD+G KMHPRSSFKAFLEVVK RS
Sbjct: 501  CGMAAVKITSKDFLFWFRSHTAKEIKWGGAKHLPGDKDDGRKMHPRSSFKAFLEVVKRRS 560

Query: 564  FPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRL 623
             PWE  E++AIHSLQ+++R S Q+ E  + SK+  N     + +  VD L     +MVRL
Sbjct: 561  LPWEDVEMDAIHSLQLILRGSLQD-EAADCSKMIVNVPAVDTIIDRVDTLH--INDMVRL 617

Query: 624  IETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRA 683
            +ETA+ P+  VD+SG INGWN+KV+ELTGLP    +G  L+D V+   +   ++ ++  A
Sbjct: 618  VETASMPVLAVDTSGRINGWNSKVSELTGLPVENVIGVPLVDLVIG-GTTNTIKRVLSLA 676

Query: 684  LLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDK 743
            L G+E+KNVE+KLR    Q++   + I+VNAC SRD+K N+ GVCF G+D+T  K++ DK
Sbjct: 677  LQGKEEKNVEIKLRTLGPQEKVGSISIVVNACCSRDFKQNIVGVCFTGKDVTGLKLIKDK 736

Query: 744  FIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--------- 794
            + R+QGDY  II S +PLIPPIF  DE   C EWN AM K+TG  R EVI          
Sbjct: 737  YSRVQGDYVGIIHSPSPLIPPIFVMDEQGRCVEWNDAMHKLTGSKREEVIDQMLLGEVFT 796

Query: 795  ------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGK 830
                                    I G   E   FG FN+Q +++E  ++A+++ D +G+
Sbjct: 797  VNSFGCRVKDQDTLTQLTILLNRVIAGGEGEKLFFGLFNKQDKYIEALISANKKVDDDGR 856

Query: 831  VIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESS 890
            V G  CF+ +  P+LQ A+  Q L +      +K+LAY+R E+KNPLNGI  +  LL+SS
Sbjct: 857  VTGVLCFLHVPSPELQYAMHVQKLSEQAAKNSLKKLAYVRLELKNPLNGINCIQNLLKSS 916

Query: 891  SISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVL 950
             +S++QRQ L+TS  C++Q+  IID  D+  IEE   E+ S EF LG ++  V++QVM+L
Sbjct: 917  DLSKDQRQLLKTSTMCQKQLAKIIDDTDIESIEECYTEMNSCEFNLGEVVTVVINQVMIL 976

Query: 951  LRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKL 1010
             +++ + +  D P E+  L L GD +RLQ VLSDFL   +   P  D  V  +V+P  + 
Sbjct: 977  SQERKVQVTWDSPVEVSQLYLIGDNLRLQQVLSDFLTTAILFTPFEDSSVHFRVIPRKER 1036

Query: 1011 IKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRY 1070
            I      +H++FR+THP  GIP  LI+ M++  ++  + EG GL +S+KL+ +M+G V+Y
Sbjct: 1037 IGTKMYIMHLEFRITHPSPGIPDDLIQHMFH-YSRSISREGFGLYISQKLVKIMDGTVQY 1095

Query: 1071 VRENSKCYFVIDLEL 1085
            +RE  +  F+I +E 
Sbjct: 1096 LREADRSSFIILVEF 1110


>gi|158513185|sp|A2XM23.2|PHYC_ORYSI RecName: Full=Phytochrome C
          Length = 1137

 Score = 1087 bits (2811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/1117 (48%), Positives = 739/1117 (66%), Gaps = 64/1117 (5%)

Query: 23   KSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPPEGVPEEQIT 81
            +SS A+ K       ++     DA L AEFE    S + F+YS SV  +   G     ++
Sbjct: 14   RSSSARSK---HSARVVAQTPMDAQLHAEFE---GSQRHFDYSSSVGAANRSGATTSNVS 67

Query: 82   AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGID 138
            AYL  +QRG  +QPFGC+LAV   TF ++ YSEN  EMLDL   +    D      +G D
Sbjct: 68   AYLQNMQRGRFVQPFGCLLAVHPETFALLAYSENAAEMLDLTPHAVPTIDQREALAVGTD 127

Query: 139  ARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSK 198
             RTLF   S  +L KAA   +++LLNPILVH+  R+  KPFYAI+HRIDVG+VIDLEP  
Sbjct: 128  VRTLFRSHSFVALQKAATFGDVNLLNPILVHA--RTSGKPFYAIMHRIDVGLVIDLEPVN 185

Query: 199  SGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHD 258
              D  ++  GA++S KLA  AI+RLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+
Sbjct: 186  PVDLPVTATGAIKSYKLAARAIARLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHE 245

Query: 259  DDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKEL 318
            D+HGEV++E +RSDLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A PV +IQ   L
Sbjct: 246  DEHGEVIAECKRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATPVKIIQDDSL 305

Query: 319  KQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSM-------------KLWG 365
             QP+ +  STLR+PHGCH QYM +MGS+ASLVM+V IN  +               KLWG
Sbjct: 306  TQPISICGSTLRAPHGCHAQYMASMGSVASLVMSVTINEDEDDDGDTGSDQQPKGRKLWG 365

Query: 366  LVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRD 425
            L+VCHHTSPR++PFPLRYACEFL+Q F +Q+  E+++A Q  E++ILRTQ LLCDMLLRD
Sbjct: 366  LMVCHHTSPRFVPFPLRYACEFLLQVFGIQINKEVELAAQAKERHILRTQTLLCDMLLRD 425

Query: 426  APFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLST 485
            AP  I TQSP++MDLVKCDGAALYY  + W++G TP+E+++K+I  WL   H   TGLST
Sbjct: 426  APVGIFTQSPNVMDLVKCDGAALYYQNQLWVLGSTPSEAEIKNIVAWLQEYHDGSTGLST 485

Query: 486  DSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGG 544
            DSL EAGYPGAA LG  V GMA  +I+SKDF+FWFRSHTAKE+KWGGAKH P +  DNG 
Sbjct: 486  DSLVEAGYPGAAALGDVVYGMAAIKISSKDFIFWFRSHTAKEIKWGGAKHEPIDADDNGR 545

Query: 545  KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME---EENDSKVQGNTQ 601
            KMHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R S Q+ +     N   +     
Sbjct: 546  KMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANKNNNAKSIVTAPS 605

Query: 602  QNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGK 661
             +  K+QG+ EL +V  EMVRLIETATAPI  VD +G+INGWN K AELTGLP  EA+GK
Sbjct: 606  DDMKKIQGLLELRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPVMEAIGK 665

Query: 662  SLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYK 721
             L+D V+ ++S   V+ ++  AL G E++N+++KL+ F  Q+ +  V ++VNAC SRD  
Sbjct: 666  PLVDLVI-DDSVEVVKQILNSALQGIEEQNLQIKLKTFNHQENNGPVILMVNACCSRDLS 724

Query: 722  NNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAM 781
              V GVCFV QD+T + ++MDK+ R+QGDY AI+++ + LIPPIF  ++   C EWN AM
Sbjct: 725  EKVVGVCFVAQDMTGQNIIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNEAM 784

Query: 782  EKVTGWMRHEVIG---------------------------------ITGQGTENFPFGFF 808
            +K+TG  R + +                                  I+GQ  E   FGFF
Sbjct: 785  QKITGIKREDAVDKLLIGEVFTHHEYGCRVKDHGTLTKLSILMNTVISGQDPEKLLFGFF 844

Query: 809  NRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAY 868
            N  G+++E  +TA++RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL Y
Sbjct: 845  NTDGKYIESLMTATKRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAAMNSFKELTY 904

Query: 869  IRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNME 928
            IRQE++NPLNG++F   LLE S ++E QR+ L ++  C+ Q+  I+   DL  IE+   E
Sbjct: 905  IRQELRNPLNGMQFTRNLLEPSDLTEEQRKLLASNVLCQEQLKKILHDTDLESIEQCYTE 964

Query: 929  LKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHC 988
            + + +F L   L+ V+ Q M   ++K + +  D P E+  + L GD +RLQ VL+DFL C
Sbjct: 965  MSTVDFNLEEALNTVLMQAMPQSKEKQISIDRDWPAEVSCMHLCGDNLRLQQVLADFLAC 1024

Query: 989  VVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTT 1048
            +++     +G + ++V+P ++ I    Q  H++FRL HP  G+P  LI++M+   +   +
Sbjct: 1025 MLQFTQPAEGPIVLQVIPRMENIGSGMQIAHLEFRLVHPAPGVPEALIQEMFR-HSPGAS 1083

Query: 1049 PEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             EGLGL +S+KL+  M+G V+Y+RE+    F++ +E 
Sbjct: 1084 REGLGLYISQKLVKTMSGTVQYLRESESSSFIVLVEF 1120


>gi|51556879|gb|AAU06210.1| phytochrome C [Triticum aestivum]
 gi|51556881|gb|AAU06211.1| phytochrome C [Triticum aestivum]
          Length = 1139

 Score = 1083 bits (2801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/1103 (49%), Positives = 731/1103 (66%), Gaps = 63/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV--ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            ++     DA L AEFE    S + F+YS SV  ++         ++AYL  +QRG  IQP
Sbjct: 26   VVAQTPVDARLHAEFE---GSQRHFDYSSSVSALNRSGASTSSAVSAYLQNMQRGRYIQP 82

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASLA 152
            FGC+LA+   +F ++ YSEN  E+LDL   +    D      +G D RTLF   S  +L 
Sbjct: 83   FGCLLAIHPESFALLAYSENAAEILDLTPHAVPTIDQRDALAVGADVRTLFRSQSAVALH 142

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++S
Sbjct: 143  KAAVFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKS 200

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
             KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV++E RRSD
Sbjct: 201  YKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVIAECRRSD 260

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A PV +IQ   L QP+ L  ST+R+P
Sbjct: 261  LEPYLGLHYPATDIPQASRFLFMKNKVRMICDCAASPVKLIQDDNLSQPISLCGSTMRAP 320

Query: 333  HGCHLQYMTNMGSIASLVMAVIINSKDSM-------------KLWGLVVCHHTSPRYIPF 379
            HGCH QYM NMGSIASLVM++ IN  D               KLWGLVVCHHTSPR++PF
Sbjct: 321  HGCHAQYMANMGSIASLVMSITINEDDDEDGDTGSDQQPKGRKLWGLVVCHHTSPRFVPF 380

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++MD
Sbjct: 381  PLRYACEFLLQVFGIQLNKEVELASQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVMD 440

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAAL Y  +  ++G TP+E ++K I  WLL  H   TGLSTDSL EAGYPGA+ L
Sbjct: 441  LVKCDGAALCYQNQIMVLGSTPSEGEIKKIVAWLLECHDGSTGLSTDSLLEAGYPGASAL 500

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLEV 558
            G+ VCGMA  +I+SK F+FWFRSHTAKE+KWGGAKH P +  DNG +MHPRSSF+AFLEV
Sbjct: 501  GEVVCGMAAIKISSKGFIFWFRSHTAKEIKWGGAKHEPGDADDNGRRMHPRSSFRAFLEV 560

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELSS 615
            VK RS PWE  E++AIHSLQ+++R S Q+ E+ ND+  +   +    +  K+QG+ EL  
Sbjct: 561  VKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANDNNARSIVEAPSDDIKKIQGLLELKI 619

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETATAPI  VD  G INGWN KVAE+TGLP +EA+G  L+D +V  +S   
Sbjct: 620  VTNEMVRLIETATAPILAVDIVGNINGWNNKVAEITGLPTTEAIGMLLVD-LVEGDSVEV 678

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+ ++  AL G E++N+E+KL+    Q+    V ++VNAC SRD  + V GVCFV QD+T
Sbjct: 679  VKQMLNSALQGTEEQNLEIKLKTMHQQESKGPVVLMVNACCSRDLSDKVVGVCFVAQDLT 738

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG- 794
              K++MDK+ R+QGDY AI+++ N LIPPIF  ++   C EWN AM+K+TG  R + I  
Sbjct: 739  GHKMVMDKYTRIQGDYVAIVKNPNELIPPIFMINDLGSCLEWNEAMQKITGIKREDAIDK 798

Query: 795  --------------------------------ITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            I+GQ  E   FGFFN  G+++E  LTA+
Sbjct: 799  LLIGELFTLHDYGCRVKDQVTLTKLSILMNTVISGQEPEKLAFGFFNTDGKYMESLLTAN 858

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YIRQE+KNPLNG++F
Sbjct: 859  KRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAATHSFKELTYIRQELKNPLNGMQF 918

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              KLLE S ++E QRQ   ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+ 
Sbjct: 919  TRKLLEPSDLTEEQRQLFASNVLCQEQLKKILHDNDLEGIEQCYMEMNTVEFNLEEALNT 978

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
            V+ Q M + ++K + L  D P E+ ++ L GD +RLQ VL+D+L C ++     +G + +
Sbjct: 979  VLMQGMSVSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVL 1038

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
            +V+P  + I    Q  H++FRL HP  G+P  LI++M+       + EGLGL +S+KL+ 
Sbjct: 1039 QVIPKKEHIGSGMQIAHLEFRLVHPAPGVPEALIQEMFR-HGPGVSREGLGLHISQKLVK 1097

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
             M+G V+Y+RE     F++ +E 
Sbjct: 1098 TMSGTVQYLREAESSSFIVLVEF 1120


>gi|119926110|emb|CAC82798.2| phytochrome C [Triticum aestivum]
          Length = 1139

 Score = 1083 bits (2800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1103 (50%), Positives = 733/1103 (66%), Gaps = 63/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV--ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            ++     DA L AEFE    S + F+YS SV  ++         ++AY+  +QRG  IQP
Sbjct: 26   VVAQTPVDARLHAEFE---GSQRHFDYSSSVSALNRSGASTSSAVSAYIQNMQRGRYIQP 82

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASLA 152
            FGC+LA+   +F ++ YSEN  E+LDL   +    D      +G D RTLF   S  +L 
Sbjct: 83   FGCLLAIHPESFALLAYSENAAEILDLTPHAVPTIDQRDALAVGADVRTLFRSQSAVALH 142

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++S
Sbjct: 143  KAAVFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKS 200

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
             KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV++E RRSD
Sbjct: 201  YKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVIAECRRSD 260

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A PV +IQ   L QP+ L  ST+R+P
Sbjct: 261  LEPYLGLHYPATDIPQASRFLFMKNKVRMICDCAASPVKLIQDDNLSQPISLCGSTMRAP 320

Query: 333  HGCHLQYMTNMGSIASLVMAVIINSKDSM-------------KLWGLVVCHHTSPRYIPF 379
            HGCH QYM NMGSIASLVM++ IN  D               KLWGLVVCHHTSPR++PF
Sbjct: 321  HGCHAQYMANMGSIASLVMSITINEDDDEDGDTGSDQQPKGRKLWGLVVCHHTSPRFVPF 380

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++MD
Sbjct: 381  PLRYACEFLLQVFGIQLNKEVELASQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVMD 440

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAAL Y  +  ++G TP+E ++K I  WLL  H   TGLSTDSL EAGYPGA+ L
Sbjct: 441  LVKCDGAALCYQNQIMVLGSTPSEGEIKKIVAWLLECHDGSTGLSTDSLLEAGYPGASAL 500

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLEV 558
            G+ VCGMA  +I+SK F+FWFRSHTAKE+KWGGAKH P +  DNG +MHPRSSF+AFLEV
Sbjct: 501  GEVVCGMAAIKISSKGFIFWFRSHTAKEIKWGGAKHEPGDADDNGRRMHPRSSFRAFLEV 560

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELSS 615
            VK RS PWE  E++AIHSLQ+++R S Q+ E+ ND+  +   +    +  K+QG+ EL  
Sbjct: 561  VKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANDNNARSIVEAPSDDIKKIQGLLELKI 619

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETATAPI  VD  G INGWN KVAE+TGLP +EA+G  L+D +V  +S   
Sbjct: 620  VTNEMVRLIETATAPILAVDIVGNINGWNNKVAEITGLPTTEAIGMLLVD-LVEGDSVEV 678

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+ ++  AL G E++N+E+KL+    Q+    V ++VNAC SRD  + V GVCFV QD+T
Sbjct: 679  VKQMLNSALQGTEEQNLEIKLKTMHQQESKGPVVLMVNACCSRDLSDKVVGVCFVAQDLT 738

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHE---- 791
              K++MDK+ R+QGDY AI+++ N LIPPIF  ++   C EWN AM+K+TG  R +    
Sbjct: 739  GHKMVMDKYTRIQGDYVAIVKNPNELIPPIFMINDLGSCLEWNEAMQKITGIKREDAIDK 798

Query: 792  -VIG----------------------------ITGQGTENFPFGFFNRQGQFVEVALTAS 822
             VIG                            I+GQ  E   FGFFN  G+++E  LTA+
Sbjct: 799  LVIGELFTLHDYGCRVKDQVTLTKLSILMNTVISGQEPEKLAFGFFNTDGKYMESLLTAN 858

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YIRQE+KNPLNG++F
Sbjct: 859  KRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAATHSFKELTYIRQELKNPLNGMQF 918

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              KLLE S ++E QRQ   ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+ 
Sbjct: 919  TRKLLEPSDLTEEQRQLFASNVLCQEQLKKILHDNDLEGIEQCYMEMNTVEFNLEEALNT 978

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
            V+ Q M + ++K + L  D P E+ ++ L GD +RLQ VL+D+L C ++     +G + +
Sbjct: 979  VLMQGMSVSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVL 1038

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
            +V+P  + I    Q  H++FRL HP  G+P  LI++M+       + EGLGL +S+KL+ 
Sbjct: 1039 QVIPKKEHIGSGMQIAHLEFRLVHPAPGVPEALIQEMFR-HGPGVSREGLGLHISQKLVK 1097

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
             M+G V+Y+RE     F++ +E 
Sbjct: 1098 TMSGTVQYLREAESSSFIVLVEF 1120


>gi|357115337|ref|XP_003559446.1| PREDICTED: phytochrome C-like [Brachypodium distachyon]
          Length = 1140

 Score = 1083 bits (2800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/1103 (49%), Positives = 729/1103 (66%), Gaps = 62/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPE--GVPEEQITAYLSKIQRGGLIQP 95
            ++     DA L AEFE    S + F+YS SV +           ++AYL  +QRG  IQP
Sbjct: 26   VVAQTPVDARLHAEFE---GSQRRFDYSSSVSAANRSGASTSTAVSAYLQNMQRGRYIQP 82

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASLA 152
            FGC+LA    TF ++ YSEN  EMLDL   +    D      +G+D RTLF   S  +L 
Sbjct: 83   FGCLLAAHPETFALLAYSENAAEMLDLTPHAVPTIDQRDALTVGVDVRTLFRSQSAVALH 142

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++S
Sbjct: 143  KAAVFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKS 200

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
             KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV++E RRSD
Sbjct: 201  YKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVIAECRRSD 260

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A+PV +IQ   L QP+ L  ST+R+P
Sbjct: 261  LEPYLGLHYPATDIPQASRFLFMKNKVRMICDCAAVPVKLIQDDNLSQPISLCGSTMRAP 320

Query: 333  HGCHLQYMTNMGSIASLVMAVIINSKD-------------SMKLWGLVVCHHTSPRYIPF 379
            HGCH QYM NMGS+ASLVM++ IN  +               KLWGLVVCHH+SPR++PF
Sbjct: 321  HGCHAQYMANMGSVASLVMSITINEDEEEDGDTGSDQQPKGRKLWGLVVCHHSSPRFVPF 380

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++MD
Sbjct: 381  PLRYACEFLLQVFGIQLNKEVELASQAKERHILRTQTLLCDMLLRDAPIGIFTQSPNVMD 440

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAAL Y  +  ++G TP+E ++K+I  WL   H   TGLSTDSL EAGYPGA+ L
Sbjct: 441  LVKCDGAALCYRNQIMVLGSTPSEGEIKNIVAWLQEYHDGSTGLSTDSLVEAGYPGASAL 500

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLEV 558
            G+ VCGMA  +I+SK F+ WFRSHTAKE+KWGGAKH P +  DNG KMHPRSSF+AFLEV
Sbjct: 501  GEIVCGMAAIKISSKGFILWFRSHTAKEIKWGGAKHEPGDADDNGRKMHPRSSFRAFLEV 560

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELSS 615
            VK RS PWE  E++AIHSLQ+++R S Q+ +  N++ V    +    +  K+QG+ EL  
Sbjct: 561  VKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANNNNNVMSIVEAPSDDMKKIQGLLELRI 620

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETATAPI  VD  G INGWN K AE+TGLP +EA+G  L+ +VVH +S   
Sbjct: 621  VTNEMVRLIETATAPILAVDIVGNINGWNNKAAEITGLPTTEAIGMPLV-QVVHGDSVEV 679

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V  ++  AL G E++N+E+KL+ F   + +  V ++VNAC SRD    V GVCFV QD+T
Sbjct: 680  VTQILNSALQGVEEQNLEIKLKTFHHLESNGPVILMVNACCSRDLSEKVVGVCFVAQDLT 739

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG- 794
             +K+++DK+ R+QGDY AI+++ N LIPPIF  ++   C EWN AM+++TG  R + I  
Sbjct: 740  GQKMILDKYTRIQGDYVAIVKNPNELIPPIFMINDLGSCLEWNEAMQRITGIKREDAIDK 799

Query: 795  --------------------------------ITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            I+GQ  E  PFGFF+  G+ +E  LTA+
Sbjct: 800  LLIGEVFTLHDYGCRVKDHATLTKLSILMNTVISGQDPEKLPFGFFDADGKCMESLLTAN 859

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YIRQE+KNPLNG++F
Sbjct: 860  KRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAATHSFKELTYIRQELKNPLNGMQF 919

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
               LLE S ++E QRQ L ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+ 
Sbjct: 920  TRNLLEPSELTEEQRQLLASNVLCQEQLKKILHDNDLEGIEQCYMEMNTVEFNLEEALNT 979

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
            V+ Q M L ++K + L  D P E+ ++ L GD +RLQ VL+DFL C ++     +G + +
Sbjct: 980  VLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADFLACTLQFTQPAEGPIVL 1039

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
            +V+P  + I    Q  H++FRL HP  G+P  LI++M+       + EGLGL +S+KL+ 
Sbjct: 1040 QVIPRKESIGSGMQIAHLEFRLNHPVPGVPETLIQEMFR-HGPGVSREGLGLHISQKLVK 1098

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
             M+G V+Y+RE     F++ +E 
Sbjct: 1099 TMSGTVQYLREAEISSFIVLVEF 1121


>gi|51556885|gb|AAU06213.1| phytochrome C [Triticum aestivum]
          Length = 1139

 Score = 1082 bits (2798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/1103 (49%), Positives = 731/1103 (66%), Gaps = 63/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV--ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            ++     DA L AEFE    S + F+YS SV  ++         ++AY+  +QRG  IQP
Sbjct: 26   VVAQTPVDARLHAEFE---GSQRHFDYSSSVSALNRSGASTSSAVSAYIQNMQRGRYIQP 82

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASLA 152
            FGC+LA+   +F ++ YSEN  E+LDL   +    D      +G D RTLF   S  +L 
Sbjct: 83   FGCLLAIHPESFALLAYSENAAEILDLTPHAVPTIDQRDALAVGADVRTLFRSQSAVALH 142

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++S
Sbjct: 143  KAAVFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKS 200

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
             KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV++E RRSD
Sbjct: 201  YKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVIAECRRSD 260

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A PV +IQ   L QP+ L  ST+R+P
Sbjct: 261  LEPYLGLHYPATDIPQASRFLFMKNKVRMICDCAASPVKLIQDDNLSQPISLCGSTMRAP 320

Query: 333  HGCHLQYMTNMGSIASLVMAVIINSKDSM-------------KLWGLVVCHHTSPRYIPF 379
            HGCH QYM NMGSIASLVM++ IN  D               KLWGLVVCHHTSPR++PF
Sbjct: 321  HGCHAQYMANMGSIASLVMSITINEDDDEDGDTGSDQQPKGRKLWGLVVCHHTSPRFVPF 380

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++MD
Sbjct: 381  PLRYACEFLLQVFGIQLNKEVELASQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVMD 440

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAAL Y  +  ++G TP+E ++K I  WLL  H   TGLSTDSL EAGYPGA+ L
Sbjct: 441  LVKCDGAALCYQNQIMVLGSTPSEGEIKKIVAWLLECHDGSTGLSTDSLLEAGYPGASAL 500

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLEV 558
            G+ VCGMA  +I+SK F+FWFRSHTAKE+KWGGAKH P +  DNG +MHPRSSF+AFLEV
Sbjct: 501  GEVVCGMAAIKISSKGFIFWFRSHTAKEIKWGGAKHEPGDADDNGRRMHPRSSFRAFLEV 560

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELSS 615
            VK RS PWE  E++AIHSLQ+++R S Q+ E+ ND+  +   +    +  K+QG+ EL  
Sbjct: 561  VKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANDNNARSIVEAPSDDIKKIQGLLELKI 619

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETATAPI  VD  G INGWN KVAE+TGLP +EA+G  L+D +V  +S   
Sbjct: 620  VTNEMVRLIETATAPILAVDIVGNINGWNNKVAEITGLPTTEAIGMLLVD-LVEGDSVEV 678

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+ ++  AL G E++N+E+KL+    Q+    V ++VNAC SRD  + V GVCFV QD+T
Sbjct: 679  VKQMLNSALQGTEEQNLEIKLKTMHQQESKGPVVLMVNACCSRDLSDKVVGVCFVAQDLT 738

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG- 794
              K++MDK+ R+QGDY AI+++ N LIPPIF  ++   C EWN AM+K+TG  R + I  
Sbjct: 739  GHKMVMDKYTRIQGDYVAIVKNPNELIPPIFMINDLGSCLEWNEAMQKITGIKREDAIDK 798

Query: 795  --------------------------------ITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            I+GQ  E   FGFFN  G+++E  LTA+
Sbjct: 799  LLIGELFTLHDYGCRVKDQVTLTKLSILMNTVISGQEPEKLAFGFFNTDGKYMESLLTAN 858

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YIRQE+KNPLNG++F
Sbjct: 859  KRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAATHSFKELTYIRQELKNPLNGMQF 918

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              KLLE S ++E QRQ   ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+ 
Sbjct: 919  TRKLLEPSDLTEEQRQLFASNVLCQEQLKKILHDNDLEGIEQCYMEMNTVEFNLEEALNT 978

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
            V+ Q M + ++K + L  D P E+ ++ L GD +RLQ VL+D+L C ++     +G + +
Sbjct: 979  VLMQGMSVSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVL 1038

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
            +V+P  + I    Q  H++FRL HP  G+P  LI++M+       + EGLGL +S+KL+ 
Sbjct: 1039 QVIPKKEHIGSGMQIAHLEFRLVHPAPGVPEALIQEMFR-HGPGVSREGLGLHISQKLVK 1097

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
             M+G V+Y+RE     F++ +E 
Sbjct: 1098 TMSGTVQYLREAESSSFIVLVEF 1120


>gi|51556883|gb|AAU06212.1| phytochrome C [Triticum aestivum]
          Length = 1139

 Score = 1082 bits (2797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/1103 (49%), Positives = 731/1103 (66%), Gaps = 63/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV--ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            ++     DA L AEFE    S + F+YS SV  ++         ++AYL  +QRG  IQP
Sbjct: 26   VVAQTPVDARLHAEFE---GSQRHFDYSSSVSALNRSGASTSSAVSAYLQNMQRGRYIQP 82

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASLA 152
            FGC+LA+   +F ++ YSEN  E+LDL   +    D      +G D RTLF   S  +L 
Sbjct: 83   FGCLLAIHPESFALLAYSENAAEILDLTPHAVPTIDQRDALAVGADVRTLFRSQSAVALH 142

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++S
Sbjct: 143  KAAVFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKS 200

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
             KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV++E RRSD
Sbjct: 201  YKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVIAECRRSD 260

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A PV +IQ  +L QP+ L  ST+R+P
Sbjct: 261  LEPYLGLHYPATDIPQASRFLFMKNKVRMICDCAASPVKLIQDDDLSQPISLCGSTMRAP 320

Query: 333  HGCHLQYMTNMGSIASLVMAVIINSKDSM-------------KLWGLVVCHHTSPRYIPF 379
            HGCH QYM NMGSIASLVM++ IN  D               KLWGLVVCHHTSPR++PF
Sbjct: 321  HGCHAQYMANMGSIASLVMSITINEDDDEDGDTGSDQQPKGRKLWGLVVCHHTSPRFVPF 380

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++MD
Sbjct: 381  PLRYACEFLLQVFGIQLNKEVELASQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVMD 440

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAAL Y  +  ++G TP+E ++  I  WLL  H   TGLSTDSL EAGYPGA+ L
Sbjct: 441  LVKCDGAALCYQNQIMVLGSTPSEGEITKIVAWLLECHDGSTGLSTDSLLEAGYPGASAL 500

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLEV 558
            G+ VCGMA  +I+SK F+FWFRSHTAKE+KWGGAKH P +  DNG +MHPRSSF+AFLEV
Sbjct: 501  GEVVCGMAAIKISSKGFIFWFRSHTAKEIKWGGAKHEPGDADDNGRRMHPRSSFRAFLEV 560

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELSS 615
            VK RS PWE  E++AIHSLQ+++R S Q+ E+ ND+  +   +    +  K+QG+ EL  
Sbjct: 561  VKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANDNNARSIVEAPSDDIKKIQGLLELKI 619

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETATAPI  VD  G INGWN KVAE+TGLP +EA+G  L+D +V  +S   
Sbjct: 620  VTNEMVRLIETATAPILAVDIVGNINGWNNKVAEITGLPTTEAIGMLLVD-LVEGDSVEV 678

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+ ++  AL G E++N+E+KL+    Q+    V ++VNAC SRD  + V GVCFV QD+T
Sbjct: 679  VKQMLNSALQGTEEQNLEIKLKTMHQQESKGPVVLMVNACCSRDLSDKVVGVCFVAQDLT 738

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG- 794
              K++MDK+ R+QGDY AI+++ N LIPPIF  ++   C EWN AM+K+TG  R + I  
Sbjct: 739  GHKMVMDKYTRIQGDYVAIVKNPNELIPPIFMINDLGSCLEWNEAMQKITGIKREDAIDK 798

Query: 795  --------------------------------ITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            I+GQ  E   FGFFN  G+++E  LTA+
Sbjct: 799  LLIGELFTLHDYGCRVKDQVTLTKLSILMNTVISGQEPEKLAFGFFNTDGKYMESLLTAN 858

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YIRQE+KNPLNG++F
Sbjct: 859  KRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAATHSFKELTYIRQELKNPLNGMQF 918

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              KLLE S ++E QRQ   ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+ 
Sbjct: 919  TRKLLEPSDLTEEQRQLFASNVLCQEQLKKILHDNDLEGIEQCYMEMNTVEFNLEEALNT 978

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
            V+ Q M + ++K + L  D P E+ ++ L GD +RLQ VL+D+L C ++     +G + +
Sbjct: 979  VLMQGMSVSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVL 1038

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
            +V+P  + I    Q  H++FRL HP  G+P  LI++M+       + EGLGL +S+KL+ 
Sbjct: 1039 QVIPKKEHIGSGMQIAHLEFRLVHPAPGVPEALIQEMFR-HGPGVSREGLGLHISQKLVK 1097

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
             M+G V+Y+RE     F++ +E 
Sbjct: 1098 TMSGTVQYLREAESSSFIVLVEF 1120


>gi|51556887|gb|AAU06214.1| phytochrome C [Triticum aestivum]
          Length = 1139

 Score = 1082 bits (2797), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/1102 (49%), Positives = 725/1102 (65%), Gaps = 61/1102 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV--ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            ++     DA L AEFE    S + F+YS SV  ++         ++AYL  +QRG  IQP
Sbjct: 26   VVAQTPVDARLHAEFE---GSQRHFDYSSSVSALNRSGASTSSAVSAYLQNMQRGRYIQP 82

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASLA 152
            FGC+LA+   +F ++ YSEN  EMLDL   +    D      +G D RTLF   S  +L 
Sbjct: 83   FGCLLAIHSESFALLAYSENAAEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSAVALH 142

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++S
Sbjct: 143  KAAVFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKS 200

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
             KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV++E RRSD
Sbjct: 201  YKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVIAECRRSD 260

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A PV +IQ   L QP+ L  ST+R+P
Sbjct: 261  LEPYLGLHYPATDIPQASRFLFMKNKVRMICDCAASPVKLIQDDNLSQPISLCGSTMRAP 320

Query: 333  HGCHLQYMTNMGSIASLVMAVIINSK-------------DSMKLWGLVVCHHTSPRYIPF 379
            HGCH QYM NMGSIASLVM++ IN                  KLWGLVVCHHTSPR++PF
Sbjct: 321  HGCHAQYMANMGSIASLVMSITINEDDDEDGDTGSDQQPKGRKLWGLVVCHHTSPRFVPF 380

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++MD
Sbjct: 381  PLRYACEFLLQVFGIQLNKEVELASQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVMD 440

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAAL Y  +  ++G TP+E ++K I  WLL  H   TGLSTDSL EAGYPGA+ L
Sbjct: 441  LVKCDGAALCYQNQIMVLGSTPSEGEIKKIVAWLLECHDGSTGLSTDSLLEAGYPGASAL 500

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLEV 558
            G+ VCGMA  +I+SK F+FWFRSHTAKE+KWGGAK  P +  DNG +MHPRSSF+AFLEV
Sbjct: 501  GEVVCGMAAIKISSKGFIFWFRSHTAKEIKWGGAKQEPGDADDNGRRMHPRSSFRAFLEV 560

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEME--EENDSKVQGNTQQNGSKMQGVDELSSV 616
            VK RS PWE  E++AIHSLQ+++R S Q+ +  + N   +      +  K+QG+ EL  V
Sbjct: 561  VKWRSVPWEDVEMDAIHSLQLILRGSLQDEDATDNNAGSIVEAPSDDIKKIQGLLELRIV 620

Query: 617  ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
              EMVRLIETATAPI  VD  G INGWN KVAE+TGLP +EA+G  L+D +V  +S   V
Sbjct: 621  TNEMVRLIETATAPILAVDIVGNINGWNNKVAEITGLPTTEAIGMLLVD-LVEGDSVEVV 679

Query: 677  ENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736
            + ++  AL G E++N+E+KL+ F  Q+    V ++VNAC SRD    V GVC V QD+T 
Sbjct: 680  KQMLNSALQGTEEQNLEIKLKTFHQQESKGPVVLMVNACCSRDLSEKVVGVCLVAQDLTG 739

Query: 737  EKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-- 794
             K++MDK+ R+QGDY AI+++ N LIPPIF  ++   C EWN AM+K+TG  R + I   
Sbjct: 740  HKMIMDKYTRIQGDYVAIVKNPNELIPPIFMINDLGSCLEWNEAMQKITGIKREDAIDKL 799

Query: 795  -------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASR 823
                                           I+GQ  E   FGFFN  G+++E  LTA++
Sbjct: 800  LIGEVFTLHDYGCRVKDQATLTKLSILMNTVISGQEPEKLAFGFFNTDGKYMESLLTANK 859

Query: 824  RTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFV 883
            RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YIRQE+KNPLNG++F 
Sbjct: 860  RTDAEGKITGALCFLHVASPELQHALQVQKMSEQAATHSFKELTYIRQELKNPLNGMQFT 919

Query: 884  HKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAV 943
             KLLE S ++E QRQ   ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+ V
Sbjct: 920  RKLLEPSDLTEEQRQLFASNVLCQEQLKKILHDNDLEGIEQCYMEMNAVEFNLEEALNTV 979

Query: 944  VSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIK 1003
            + Q M L ++K + L  D P E+ ++ L GD +RLQ VL+D+L C ++     +G + ++
Sbjct: 980  LMQGMSLSKEKQISLDRDWPVEVSSIYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVLQ 1039

Query: 1004 VLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIM 1063
            V+P  + I    Q  H++FRL HP  G+P  LI++M+       + EGLGL +S+KL+  
Sbjct: 1040 VIPKKEHIGSGMQIAHLEFRLVHPAPGVPEALIQEMFR-HGPGVSREGLGLHISQKLVKT 1098

Query: 1064 MNGRVRYVRENSKCYFVIDLEL 1085
            M+G V+Y+RE     F++ +E 
Sbjct: 1099 MSGTVQYLREAESSSFIVLVEF 1120


>gi|82491942|gb|ABB77851.1| phytochrome C [Hordeum vulgare subsp. vulgare]
          Length = 1147

 Score = 1081 bits (2795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/1103 (49%), Positives = 734/1103 (66%), Gaps = 63/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV--ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            ++     DA L AEFE   +S + F+YS SV  ++         ++A+L  +QRG  IQP
Sbjct: 26   VVAQTPVDAQLHAEFE---SSHRHFDYSSSVSALNRSGASTSSAVSAFLQNMQRGRYIQP 82

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASLA 152
            FGC+LA+   +F ++ YSEN  EMLDL   +    D      +G D RTLF   S  +L 
Sbjct: 83   FGCLLAIHPESFALLAYSENAAEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSAVALH 142

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++S
Sbjct: 143  KAAVFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKS 200

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
             KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV++E RRSD
Sbjct: 201  YKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVIAECRRSD 260

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A PV +IQ   L QP+ L  ST+R+P
Sbjct: 261  LEPYLGLHYPATDIPQASRFLFMKNKVRMICDCAASPVKLIQDGNLSQPISLCGSTMRAP 320

Query: 333  HGCHLQYMTNMGSIASLVMAVIINSKDSM-------------KLWGLVVCHHTSPRYIPF 379
            HGCH QYM NMGSIASLVM+V +N  D               KLWGLVVCHHTSPR++PF
Sbjct: 321  HGCHAQYMANMGSIASLVMSVTVNEDDDEDGDTGSDQQPKGRKLWGLVVCHHTSPRFVPF 380

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++MD
Sbjct: 381  PLRYACEFLLQVFGIQLNKEVELASQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVMD 440

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAAL Y  +  ++G  P+E ++K IA WLL  H   TGLSTDSL EAGYPGA+ L
Sbjct: 441  LVKCDGAALCYQNQIMVLGSAPSEGEIKKIAAWLLECHDGSTGLSTDSLLEAGYPGASAL 500

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLEV 558
            G+ VCGMA  +I+SK F+FWFRSHTAKE+KW GAKH P +  DNG +MHPRSSF+AFLEV
Sbjct: 501  GEVVCGMAAIKISSKGFIFWFRSHTAKEIKWSGAKHEPGDADDNGRRMHPRSSFRAFLEV 560

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELSS 615
            VK RS PWE  E++AIHSLQ+++R S Q+ E+ ND+ V+   +    +  K+QG+ EL  
Sbjct: 561  VKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANDNNVRSIVEAPSDDVRKIQGLLELRI 619

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETATAPI  VD  G+INGWN KVAE+TGLP +EA+G  L+D +V  +S   
Sbjct: 620  VTNEMVRLIETATAPILAVDIVGSINGWNGKVAEITGLPTTEAIGMLLVD-LVEGDSVEV 678

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            ++ ++  A+ G E++N E+KL+ F  Q+ +  V ++VNAC SRD  + V GVCFV QD+T
Sbjct: 679  IKQMLNSAMQGTEEQNFEIKLKTFHQQESNGPVVLMVNACCSRDLSDKVVGVCFVAQDLT 738

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG- 794
              K++MDK+ ++QGDY AI+++ N LIPPIF  ++   C EWN AM+K+TG  R + I  
Sbjct: 739  GHKMVMDKYTQIQGDYVAIVKNPNELIPPIFMINDLGSCLEWNEAMQKITGIKREDAIDK 798

Query: 795  --------------------------------ITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            I+GQ  E   FGFF+  G+++E  LTA+
Sbjct: 799  LLIGEVFTLHDYGCRVKDQATITKLSILMNTVISGQEPEKLAFGFFSTDGKYMESLLTAN 858

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YIRQE+KNPLNG++F
Sbjct: 859  KRTDAEGKITGALCFLHVPSPELQHALQVQKMSEQAAARSFKELTYIRQELKNPLNGMQF 918

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              KLLE S ++E QRQ   ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+ 
Sbjct: 919  TRKLLEPSDLTEEQRQLFASNVLCQEQLKKILHDNDLEGIEQCYMEMNTVEFNLEEALNT 978

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
            V+ Q M L ++K + L  D P E+ ++ L GD +RLQ VL+D+L C ++     +G + +
Sbjct: 979  VLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVL 1038

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
            +V+P  + I    Q  H++FR+ HP  G+P  LI++M+       + EGLGL +S+KL+ 
Sbjct: 1039 QVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFR-HGPGVSREGLGLHISQKLVK 1097

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
             M+G V+Y+RE     F++ +E 
Sbjct: 1098 TMSGTVQYLREAESSSFIVLVEF 1120


>gi|77963970|gb|ABB13327.1| phytochrome C [Hordeum vulgare subsp. vulgare]
          Length = 1139

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/1103 (49%), Positives = 734/1103 (66%), Gaps = 63/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV--ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            ++     DA L AEFE   +S + F+YS SV  ++         ++A+L  +QRG  IQP
Sbjct: 26   VVAQTPVDAQLHAEFE---SSHRHFDYSSSVSALNRSGASTSSAVSAFLQNMQRGRYIQP 82

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASLA 152
            FGC+LA+   +F ++ YSEN  EMLDL   +    D      +G D RTLF   S  +L 
Sbjct: 83   FGCLLAIHPESFALLAYSENAAEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSAVALH 142

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++S
Sbjct: 143  KAAVFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKS 200

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
             KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV++E RRSD
Sbjct: 201  YKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVIAECRRSD 260

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A PV +IQ   L QP+ L  ST+R+P
Sbjct: 261  LEPYLGLHYPATDIPQASRFLFMKNKVRMICDCAASPVKLIQDGNLSQPISLCGSTMRAP 320

Query: 333  HGCHLQYMTNMGSIASLVMAVIINSKDSM-------------KLWGLVVCHHTSPRYIPF 379
            HGCH QYM NMGSIASLVM+V +N  D               KLWGLVVCHHTSPR++PF
Sbjct: 321  HGCHAQYMANMGSIASLVMSVTVNEDDDEDGDTGSDQQPKGRKLWGLVVCHHTSPRFVPF 380

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++MD
Sbjct: 381  PLRYACEFLLQVFGIQLNKEVELASQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVMD 440

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAAL Y  +  ++G  P+E ++K IA WLL  H   TGLSTDSL EAGYPGA+ L
Sbjct: 441  LVKCDGAALCYQNQIMVLGSAPSEGEIKKIAAWLLECHDGSTGLSTDSLLEAGYPGASAL 500

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLEV 558
            G+ VCGMA  +I+SK F+FWFRSHTAKE+KW GAKH P +  DNG +MHPRSSF+AFLEV
Sbjct: 501  GEVVCGMAAIKISSKGFIFWFRSHTAKEIKWSGAKHEPGDADDNGRRMHPRSSFRAFLEV 560

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELSS 615
            VK RS PWE  E++AIHSLQ+++R S Q+ E+ ND+ V+   +    +  K+QG+ EL  
Sbjct: 561  VKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANDNNVRSIVEAPSDDVRKIQGLLELRI 619

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETATAPI  VD  G+INGWN KVAE+TGLP +EA+G  L+D +V  +S   
Sbjct: 620  VTNEMVRLIETATAPILAVDIVGSINGWNGKVAEITGLPTTEAIGMLLVD-LVEGDSVEV 678

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            ++ ++  A+ G E++N E+KL+ F  Q+ +  V ++VNAC SRD  + V GVCFV QD+T
Sbjct: 679  IKQMLNSAMQGTEEQNFEIKLKTFHQQESNGPVVLMVNACCSRDLSDKVVGVCFVAQDLT 738

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG- 794
              K++MDK+ ++QGDY AI+++ N LIPPIF  ++   C EWN AM+K+TG  R + I  
Sbjct: 739  GHKMVMDKYTQIQGDYVAIVKNPNELIPPIFMINDLGSCLEWNEAMQKITGIKREDAIDK 798

Query: 795  --------------------------------ITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            I+GQ  E   FGFF+  G+++E  LTA+
Sbjct: 799  LLIGEVFTLHDYGCRVKDQATITKLSILMNTVISGQEPEKLAFGFFSTDGKYMESLLTAN 858

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YIRQE+KNPLNG++F
Sbjct: 859  KRTDAEGKITGALCFLHVPSPELQHALQVQKMSEQAAARSFKELTYIRQELKNPLNGMQF 918

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              KLLE S ++E QRQ   ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+ 
Sbjct: 919  TRKLLEPSDLTEEQRQLFASNVLCQEQLKKILHDNDLEGIEQCYMEMNTVEFNLEEALNT 978

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
            V+ Q M L ++K + L  D P E+ ++ L GD +RLQ VL+D+L C ++     +G + +
Sbjct: 979  VLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVL 1038

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
            +V+P  + I    Q  H++FR+ HP  G+P  LI++M+       + EGLGL +S+KL+ 
Sbjct: 1039 QVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFR-HGPGVSREGLGLHISQKLVK 1097

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
             M+G V+Y+RE     F++ +E 
Sbjct: 1098 TMSGTVQYLREAESSSFIVLVEF 1120


>gi|51556877|gb|AAU06209.1| phytochrome C [Triticum spelta]
          Length = 1139

 Score = 1080 bits (2792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/1103 (49%), Positives = 731/1103 (66%), Gaps = 63/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV--ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            ++     DA L AEFE    S + F+YS SV  ++         ++AYL  +QRG  IQP
Sbjct: 26   VVAQTPVDARLHAEFE---GSQRHFDYSSSVSALNRSGASTSSAVSAYLQNMQRGRYIQP 82

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASLA 152
            FGC+LA+   +F ++ Y+EN  E+LDL   +    D      +G D RTLF   S  +L 
Sbjct: 83   FGCLLAIHPESFALLAYNENAAEILDLTPHAVPTIDQRDALAVGADVRTLFRSQSAVALH 142

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++S
Sbjct: 143  KAAVFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKS 200

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
             KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV++E RRSD
Sbjct: 201  YKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVIAECRRSD 260

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A PV +IQ   L QP+ L  ST+R+P
Sbjct: 261  LEPYLGLHYPATDIPQASRFLFMKNKVRMICDCAASPVKLIQDDNLSQPISLCGSTMRAP 320

Query: 333  HGCHLQYMTNMGSIASLVMAVIINSKDSM-------------KLWGLVVCHHTSPRYIPF 379
            HGCH QYM NMGSIASLVM++ IN  D               KLWGLVVCHHTSPR++PF
Sbjct: 321  HGCHAQYMANMGSIASLVMSITINEDDDEDGDTGSDQQPKGRKLWGLVVCHHTSPRFVPF 380

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++MD
Sbjct: 381  PLRYACEFLLQVFGIQLNKEVELASQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVMD 440

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAAL Y  +  ++G TP+E ++K I  WLL  H   TGLSTDSL EAGYPGA+ L
Sbjct: 441  LVKCDGAALCYQNQIMVLGSTPSEGEIKKIVAWLLECHDGSTGLSTDSLLEAGYPGASAL 500

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLEV 558
            G+ VCGMA  +I+SK F+FWFRSHTAKE+KWGGAKH P +  DNG +MHPRSSF+AFLEV
Sbjct: 501  GEVVCGMAAIKISSKGFIFWFRSHTAKEIKWGGAKHEPGDADDNGRRMHPRSSFRAFLEV 560

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELSS 615
            VK RS PWE  E++AIHSLQ+++R S Q+ E+ ND+  +   +    +  K+QG+ EL  
Sbjct: 561  VKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANDNNARSIVEAPSDDIKKIQGLLELKI 619

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETATAPI  VD  G I+GWN KVAE+TGLP +EA+G  L+D +V  +S   
Sbjct: 620  VTNEMVRLIETATAPILAVDIVGNISGWNNKVAEITGLPTTEAIGMLLVD-LVEGDSVEV 678

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+ ++  AL G E++N+E+KL+    Q+    V ++VNAC SRD  + V GVCFV QD+T
Sbjct: 679  VKQMLNSALQGTEEQNLEIKLKTMHQQESKGPVVLMVNACCSRDLSDKVVGVCFVAQDLT 738

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG- 794
              K++MDK+ R+QGDY AI+++ N LIPPIF  ++   C EWN AM+K+TG  R + I  
Sbjct: 739  GHKMVMDKYTRIQGDYVAIVKNPNELIPPIFMINDLGSCLEWNEAMQKITGIKREDAIDK 798

Query: 795  --------------------------------ITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            I+GQ  E   FGFFN  G+++E  LTA+
Sbjct: 799  LLIGELFTLHDYGCRVKDQVTLTKLSILMNTVISGQEPEKLAFGFFNTDGKYMESLLTAN 858

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YIRQE+KNPLNG++F
Sbjct: 859  KRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAATHSFKELTYIRQELKNPLNGMQF 918

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              KLLE S ++E QRQ   ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+ 
Sbjct: 919  TRKLLEPSDLTEEQRQLFASNVLCQEQLKKILHDNDLEGIEQCYMEMNTVEFNLEEALNT 978

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
            V+ Q M + ++K + L  D P E+ ++ L GD +RLQ VL+D+L C ++     +G + +
Sbjct: 979  VLMQGMSVSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVL 1038

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
            +V+P  + I    Q  H++FRL HP  G+P  LI++M+       + EGLGL +S+KL+ 
Sbjct: 1039 QVIPKKEHIGSGMQIAHLEFRLVHPAPGVPEALIQEMFR-HGPGVSREGLGLHISQKLVK 1097

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
             M+G V+Y+RE     F++ +E 
Sbjct: 1098 TMSGTVQYLREAESSSFIVLVEF 1120


>gi|38037242|gb|AAR08427.1| phytochrome A [Monotropastrum globosum]
          Length = 1130

 Score = 1078 bits (2789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/1135 (48%), Positives = 744/1135 (65%), Gaps = 84/1135 (7%)

Query: 18   NTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV--------- 68
            ++ P +SS +  +  +  + II     DA L A+FE+S   G SF+YS SV         
Sbjct: 3    SSRPTQSSGSSGRSKHSAR-IIAQTTVDAKLHADFEES---GGSFDYSTSVRFTGTVGGD 58

Query: 69   ISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-- 126
            I P     ++  TAYL +IQRG LIQPFGC+LAV+E TF++I YSEN  EML + S +  
Sbjct: 59   IQPRS---DKVTTAYLHQIQRGKLIQPFGCLLAVDEKTFKVIAYSENAPEMLTMVSHAVP 115

Query: 127  --EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILH 184
               D  L G IG D RT+FT PS A+L KA    E+SLLNPILVH  +    KPFYAI+H
Sbjct: 116  SVGDHPLLG-IGTDVRTIFTNPSAAALQKAMGYGEVSLLNPILVHCKTSG--KPFYAIVH 172

Query: 185  RIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQK 244
            R+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G++ +LCD +V++V +
Sbjct: 173  RVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGNMRILCDAMVQEVFE 232

Query: 245  LTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICD 304
            LTGYDRVM+Y FHDDDHGEV SE+ +  LEPYLG+H+PA DIPQAARFLF +N++RMICD
Sbjct: 233  LTGYDRVMVYKFHDDDHGEVFSELTKPGLEPYLGLHYPATDIPQAARFLFMKNKIRMICD 292

Query: 305  CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSM--- 361
            CHA  V VIQ  +L   L L  STLR+PH CHLQYM NM SIASLVM+V++N  D     
Sbjct: 293  CHAKQVKVIQDDKLPIDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVNEGDEEGDG 352

Query: 362  --------------KLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLA 407
                          +LWGL+VCH+T+PR++PFPLRYACEFL Q F++ +  EL++  Q+ 
Sbjct: 353  GGSSVSSNQQQKIKRLWGLLVCHNTTPRFVPFPLRYACEFLAQVFTIHVNKELELENQIH 412

Query: 408  EKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLK 467
            EKNILRTQ LLCDML+RDAP  IV+QSP++MDLVKCDGA L Y  + + +G TPT+ QL+
Sbjct: 413  EKNILRTQTLLCDMLMRDAPLGIVSQSPNVMDLVKCDGAVLLYKDKTYRMGTTPTDFQLR 472

Query: 468  DIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKE 527
            DI +WL   H D TGLSTDSL +AGYPGA   G  VCGMA  +ITS D LFWF++ TA E
Sbjct: 473  DIVYWLSEYHTDSTGLSTDSLYDAGYPGALAFGDGVCGMAAVKITSNDMLFWFKAQTAAE 532

Query: 528  VKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQE 587
            ++WGGAKH    +D+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++
Sbjct: 533  IQWGGAKHESGERDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKD 592

Query: 588  MEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
             +  + +    +T+ +  K++G++EL +V  EMVRLIETAT PI  VD  G +NGWN K+
Sbjct: 593  TKAMDATTDVIHTRLHDLKIEGMEELEAVTSEMVRLIETATVPILAVDVDGLVNGWNLKI 652

Query: 648  AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
            AELTGLP  +A+G+ L+  +V + S G V+ ++  AL G+E++N++ +L+  E ++    
Sbjct: 653  AELTGLPVDKAIGRDLL-SLVEDSSTGIVKKMLDLALQGKEEQNIQFELKTDESRRDSGP 711

Query: 708  VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFA 767
            + ++VNAC SRD+  NV GVCFV QDIT  K +MDKF R++GDY+AI+Q+ NPLIPPI  
Sbjct: 712  ISLVVNACASRDHHENVVGVCFVAQDITGHKTVMDKFTRIEGDYKAIVQNPNPLIPPILG 771

Query: 768  SDENACCSEWNAAMEKVTGWMRHEVI---------------------------------G 794
            +DE   CSEWN AMEK++GW R +VI                                  
Sbjct: 772  TDEFGWCSEWNLAMEKISGWNREDVINKMLLGEVFGTHVVCCRLKNQEAFVNLGIVLNNA 831

Query: 795  ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGL 854
            +TG+ +E   FGFF R G++VE  L AS++ D EG V G FC +Q+  P+LQ AL  Q L
Sbjct: 832  VTGRESEKISFGFFARNGKYVECILCASKKIDGEGAVTGVFCLLQLASPELQQALHVQRL 891

Query: 855  EDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTII 914
             +     + KELAYIR++ +  L+GI +  +L+E + + E Q+Q L TS  C+ Q+  I+
Sbjct: 892  TEQTALKRFKELAYIRRQTRASLSGIMYSWRLMEGTDLRERQKQLLHTSAQCQHQLTKIL 951

Query: 915  DGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGD 974
            D  DL CI +G ++L+  EF L  +L A +SQV +    K +H+ + + EE    +L GD
Sbjct: 952  DDTDLDCIIDGYLDLEMVEFTLYEVLSASISQVTLKSNGKGIHIANPLQEEKMPATLYGD 1011

Query: 975  RIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKD----ADQFVHVQFRLTHPGEG 1030
             +RLQ V++DFL   V   P+       +++    L KD    + Q VHV+ R+TH G G
Sbjct: 1012 NLRLQQVIADFLSISVNFTPNGG-----QIVASASLTKDRLGQSVQLVHVEIRITHMGGG 1066

Query: 1031 IPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            +P  L+  M+ G    T+ EG+ L +SRKL+ +MNG V+Y+RE  K  F+I +EL
Sbjct: 1067 VPEGLLNQMFGGDTD-TSEEGISLLVSRKLVKLMNGDVQYLREAGKSTFIISVEL 1120


>gi|326491833|dbj|BAJ98141.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1147

 Score = 1077 bits (2786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/1103 (49%), Positives = 732/1103 (66%), Gaps = 63/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV--ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            ++     DA L AEFE   +S + F+YS SV  ++         ++A+L  +QRG  IQP
Sbjct: 26   VVAQTPVDAQLHAEFE---SSHRHFDYSSSVSALNRSGASTSSAVSAFLQNMQRGRYIQP 82

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASLA 152
            FGC+LA+   +F ++ YSEN  EMLDL   +    D      +G D RTLF   S  +L 
Sbjct: 83   FGCLLAIHPESFALLAYSENAAEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSAVALH 142

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++S
Sbjct: 143  KAAVFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKS 200

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
             KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV++E RRSD
Sbjct: 201  YKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVIAECRRSD 260

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A PV +IQ   L QP+ L  ST+R+P
Sbjct: 261  LEPYLGLHYPATDIPQASRFLFMKNKVRMICDCAASPVKLIQDGNLSQPISLCGSTMRAP 320

Query: 333  HGCHLQYMTNMGSIASLVMAVIINSK-------------DSMKLWGLVVCHHTSPRYIPF 379
            HGCH QYM NMGSIASLVM+V +N                  KLWGLVVCHHTSPR++P 
Sbjct: 321  HGCHAQYMANMGSIASLVMSVTVNEDDDEDGDTGSDQQPKGRKLWGLVVCHHTSPRFVPS 380

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++MD
Sbjct: 381  PLRYACEFLLQVFGIQLNKEVELASQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVMD 440

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAAL Y  +  ++G  P+E ++K IA WLL  H   TGLSTDSL EAGYPGA+ L
Sbjct: 441  LVKCDGAALCYQNQIMVLGSAPSEGEIKKIAAWLLECHDGSTGLSTDSLLEAGYPGASAL 500

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLEV 558
            G+ VCGMA  +I+SK F+FWFRSHTAKE+KW GAKH P +  DNG +MHPRSSF+AFLEV
Sbjct: 501  GEVVCGMAAIKISSKGFIFWFRSHTAKEIKWSGAKHEPGDADDNGRRMHPRSSFRAFLEV 560

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELSS 615
            VK RS PWE  E++AIHSLQ+++R S Q+ E+ ND+ V+   +    +  K+QG+ EL  
Sbjct: 561  VKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANDNNVRSIVEAPSDDVRKIQGLLELRI 619

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETATAPI  VD  G+INGWN KVAE+TGLP +EA+G  L+D +V  +S   
Sbjct: 620  VTNEMVRLIETATAPILAVDIVGSINGWNGKVAEITGLPTTEAIGMLLVD-LVEGDSVEV 678

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            ++ ++  A+ G E++N E+KL+ F  Q+ +  V ++VNAC SRD  + V GVCFV QD+T
Sbjct: 679  IKQMLNSAMQGTEEQNFEIKLKTFHQQESNGPVVLMVNACCSRDLSDKVVGVCFVAQDLT 738

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG- 794
              K++MDK+ ++QGDY AI+++ N LIPPIF  ++   C EWN AM+K+TG  R + I  
Sbjct: 739  GHKMVMDKYTQIQGDYVAIVKNPNELIPPIFMINDLGSCLEWNEAMQKITGIKREDAIDK 798

Query: 795  --------------------------------ITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            I+GQ  E   FGFF+  G+++E  LTA+
Sbjct: 799  LLIGEVFTLHDYGCRVKDQATITKLSILMNTVISGQEPEKLAFGFFSTDGKYMESLLTAN 858

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YIRQE+KNPLNG++F
Sbjct: 859  KRTDAEGKITGALCFLHVPSPELQHALQVQKMSEQAAARSFKELTYIRQELKNPLNGMQF 918

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              KLLE S ++E QRQ   ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+ 
Sbjct: 919  TRKLLEPSDLTEEQRQLFASNVLCQEQLKKILHDNDLEGIEQCYMEMNTVEFNLEEALNT 978

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
            V+ Q M L ++K + L  D P E+ ++ L GD +RLQ VL+D+L C ++     +G + +
Sbjct: 979  VLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVL 1038

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
            +V+P  + I    Q  H++FR+ HP  G+P  LI++M+       + EGLGL +S+KL+ 
Sbjct: 1039 QVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFR-HGPGVSREGLGLHISQKLVK 1097

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
             M+G V+Y+RE     F++ +E 
Sbjct: 1098 TMSGTVQYLREAESSSFIVLVEF 1120


>gi|77963968|gb|ABB13326.1| phytochrome C [Hordeum vulgare subsp. vulgare]
          Length = 1139

 Score = 1077 bits (2784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/1103 (49%), Positives = 733/1103 (66%), Gaps = 63/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV--ISPPEGVPEEQITAYLSKIQRGGLIQP 95
            ++     DA L AEFE   +S + F+YS SV  ++         ++A+L  +QRG  IQP
Sbjct: 26   VVAQTPVDAQLHAEFE---SSHRHFDYSSSVSALNRSGASTSSAVSAFLQNMQRGRYIQP 82

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASLA 152
            FGC+LA+   +F ++ YSEN  EMLDL   +    D      +G D RTLF   S  +L 
Sbjct: 83   FGCLLAIHPESFALLAYSENAAEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSAVALH 142

Query: 153  KAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQS 212
            KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++S
Sbjct: 143  KAAVFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPADVPVTAAGALKS 200

Query: 213  QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD 272
             KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV++E RRSD
Sbjct: 201  YKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVIAECRRSD 260

Query: 273  LEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSP 332
            LEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A PV +I    L QP+ L  ST+R+P
Sbjct: 261  LEPYLGLHYPATDIPQASRFLFMKNKVRMICDCAASPVKLIHDGNLSQPISLCGSTMRAP 320

Query: 333  HGCHLQYMTNMGSIASLVMAVIINSKDSM-------------KLWGLVVCHHTSPRYIPF 379
            HGCH QYM NMGSIASLVM+V +N  D               KLWGLVVCHHTSPR++PF
Sbjct: 321  HGCHAQYMANMGSIASLVMSVTVNEDDDEDGDTGSDQQPKGRKLWGLVVCHHTSPRFVPF 380

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++MD
Sbjct: 381  PLRYACEFLLQVFGIQLNKEVELASQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVMD 440

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAAL Y  +  ++G  P+E ++K IA WLL  H   TGLSTDSL EAGYPGA+ L
Sbjct: 441  LVKCDGAALCYQNQIMVLGSAPSEGEIKKIAAWLLECHDGSTGLSTDSLLEAGYPGASAL 500

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLEV 558
            G+ VCGMA  +I+SK F+FWFRSHTAKE+KW GAKH P +  DNG +MHPRSSF+AFLEV
Sbjct: 501  GEVVCGMAAIKISSKGFIFWFRSHTAKEIKWSGAKHEPGDADDNGRRMHPRSSFRAFLEV 560

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELSS 615
            VK RS PWE  E++AIHSLQ+++R S Q+ E+ ND+ V+   +    +  K+QG+ EL  
Sbjct: 561  VKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANDNNVRSIVEAPSDDVRKIQGLLELRI 619

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETATAPI  VD  G+INGWN KVAE+TGLP +EA+G  L+D +V  +S   
Sbjct: 620  VTNEMVRLIETATAPILAVDIVGSINGWNGKVAEITGLPTTEAIGMLLVD-LVEGDSVEV 678

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            ++ ++  A+ G E++N E+KL+ F  Q+ +  V ++VNAC SRD  + V GVCFV QD+T
Sbjct: 679  IKQMLNSAMQGTEEQNFEIKLKTFHQQESNGPVVLMVNACCSRDLSDKVVGVCFVAQDLT 738

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG- 794
              K++MDK+ ++QGDY AI+++ N LIPPIF  ++   C EWN AM+K+TG  R + I  
Sbjct: 739  GHKMVMDKYTQIQGDYVAIVKNPNELIPPIFMINDLGSCLEWNEAMQKITGIKREDAIDK 798

Query: 795  --------------------------------ITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            I+GQ  E   FGFF+  G+++E  LTA+
Sbjct: 799  LLIGEVFTLHDYGCRVKDQATITKLSILMNTVISGQEPEKLAFGFFSTDGKYMESLLTAN 858

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YIRQE+KNPLNG++F
Sbjct: 859  KRTDAEGKITGALCFLHVPSPELQHALQVQKMSEQAAARSFKELTYIRQELKNPLNGMQF 918

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              KLLE S ++E QRQ   ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+ 
Sbjct: 919  TRKLLEPSDLTEEQRQLFASNVLCQEQLKKILHDNDLEGIEQCYMEMNTVEFNLEEALNT 978

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
            V+ Q M L ++K + L  D P E+ ++ L GD +RLQ VL+D+L C ++     +G + +
Sbjct: 979  VLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDNLRLQQVLADYLACTLQFTRPAEGPIVL 1038

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
            +V+P  + I    +  H++FR+ HP  G+P  LI++M+       + EGLGL +S+KL+ 
Sbjct: 1039 QVIPKKEHIGSGMRIAHLEFRVVHPAPGVPEALIQEMFR-HGPGVSREGLGLHISQKLVK 1097

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
             M+G V+Y+RE     F++ +E 
Sbjct: 1098 TMSGTVQYLREAESSSFIVLVEF 1120


>gi|37926897|gb|AAP06790.1| phytochrome C1 apoprotein [Zea mays]
 gi|414872852|tpg|DAA51409.1| TPA: phytochromeC1 [Zea mays]
          Length = 1135

 Score = 1075 bits (2779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/1128 (49%), Positives = 741/1128 (65%), Gaps = 65/1128 (5%)

Query: 12   SIGGGHNTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-IS 70
            S+   +  T  +SS A+ K       ++     DA L AEFE    S + F+YS SV  +
Sbjct: 2    SLPSNNRRTCSRSSSARSK---HSARVVAQTPVDAQLHAEFE---GSQRHFDYSSSVGAA 55

Query: 71   PPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDF- 129
                     ++ YL  +QRG  IQPFGC+LAV   TF ++ YSEN  EMLDL   +    
Sbjct: 56   NRPSASTSTVSTYLQNMQRGRYIQPFGCLLAVHPDTFALLAYSENAPEMLDLTPHAVPTI 115

Query: 130  -ELNGL-IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
             + + L IG+D RTLF   S  +L KAAA  E++LLNPILVH+  R+  KPFYAILHRID
Sbjct: 116  DQRDALGIGVDVRTLFRSQSSVALHKAAAFGEVNLLNPILVHA--RTSGKPFYAILHRID 173

Query: 188  VGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTG 247
            VG+VIDLEP    D  ++ AGA++S KLA  AISRLQ+LP G++ LLCD +V +V +LTG
Sbjct: 174  VGLVIDLEPVNPADVPVTAAGALKSYKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTG 233

Query: 248  YDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHA 307
            YDRVM Y F++D+HGEV+SE RRSDLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A
Sbjct: 234  YDRVMAYKFYEDEHGEVISECRRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCCA 293

Query: 308  IPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------- 360
             PV VIQ   L QPL L  STLR+ HGCH QYM NMGS+ASL M+V IN  +        
Sbjct: 294  TPVKVIQDDSLAQPLSLCGSTLRASHGCHAQYMANMGSVASLAMSVTINEDEEEDGDTGS 353

Query: 361  ------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRT 414
                   KLWGLVVCHHTSPR++PFPLRYACEFL+Q F +QL  E+++A Q  E++ILRT
Sbjct: 354  DQQPKGRKLWGLVVCHHTSPRFVPFPLRYACEFLLQVFGIQLNKEVELAAQAKERHILRT 413

Query: 415  QVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLL 474
            Q LLCDMLLRDAP  I T+SP++MDLVKCDGAALYY  +  ++G TP+ES++K IA WL 
Sbjct: 414  QTLLCDMLLRDAPVGIFTRSPNVMDLVKCDGAALYYQNQLLVLGSTPSESEIKSIATWLQ 473

Query: 475  NNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAK 534
            +NH   TGLSTDSL EAGYPGA  L + VCGMA  +I+SKDF+FWFRSHT KE+KWGGAK
Sbjct: 474  DNHDGSTGLSTDSLVEAGYPGAVALREVVCGMAAIKISSKDFIFWFRSHTTKEIKWGGAK 533

Query: 535  HHP-EHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEND 593
            H P +  D+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R S  + E+ N 
Sbjct: 534  HEPVDADDDGRRMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLPD-EDANR 592

Query: 594  SKVQGNTQ---QNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAEL 650
            + V+   +    +  K+QG+ EL +V  EMVRLIETATAP+  VD +G INGWN K AEL
Sbjct: 593  NNVRSIVKAPSDDMKKIQGLLELRTVTNEMVRLIETATAPVLAVDIAGNINGWNNKAAEL 652

Query: 651  TGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYI 710
            TGLP  EA+G+ LID VV  +S   V+ ++  AL G E++N+E+KL+ F   + +  V +
Sbjct: 653  TGLPVMEAIGRPLIDLVV-TDSIEVVKQILDSALQGIEEQNMEIKLKTFHEHECNGPVIL 711

Query: 711  LVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDE 770
             VN+C SRD    V GVCFV QD+T +K++MDK+ R+QGDY AI+++   LIPPIF  ++
Sbjct: 712  KVNSCCSRDLSEKVIGVCFVAQDLTRQKMIMDKYTRIQGDYVAIVKNPTELIPPIFMIND 771

Query: 771  NACCSEWNAAMEKVTGWMRHEVIG---------------------------------ITG 797
               C EWN AM+K+TG  R + I                                  I+G
Sbjct: 772  LGSCLEWNKAMQKITGIKREDAINKLLIGEVFTLHDYGCRVKDHATLTKLSILMNAVISG 831

Query: 798  QGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDM 857
            Q  E   FGFF+  G+++E  LT ++RTDAEGK+ G  CF+ +  P+LQ AL+ Q + + 
Sbjct: 832  QDPEKLFFGFFDTDGKYIESLLTVNKRTDAEGKITGALCFLHVASPELQHALQVQKMSEQ 891

Query: 858  DIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGM 917
                  KEL YIRQE++NPLNG++F   LL+ S ++E QRQ L ++  C+ Q+  I+   
Sbjct: 892  AATNSFKELTYIRQELRNPLNGMQFTCNLLKPSELTEEQRQLLSSNVLCQDQLKKILHDT 951

Query: 918  DLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIR 977
            DL  IE+  ME+ + EF L   L+ V+ Q + L ++K + +  + P E+  + L GD +R
Sbjct: 952  DLESIEQCYMEMNTVEFNLEQALNTVLMQGIPLGKEKQISIERNWPVEVSCMYLYGDNLR 1011

Query: 978  LQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIE 1037
            LQ +L+D+L C ++   + +G + ++V+   + I    Q  H++FR+ HP  G+P  LI+
Sbjct: 1012 LQQILADYLACALQFTQTAEGPIVLQVMSKKENIGSGMQIAHLEFRIVHPAPGVPEALIQ 1071

Query: 1038 DMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            +M+   N   + EGLGL +S+KL+  M+G V+Y+RE     F+I +E 
Sbjct: 1072 EMFQ-HNPGVSREGLGLYISQKLVKTMSGTVQYLREADTSSFIILMEF 1118


>gi|212722792|ref|NP_001131622.1| uncharacterized protein LOC100192976 [Zea mays]
 gi|37926916|gb|AAP06791.1| phytochrome C2 apoprotein [Zea mays]
 gi|413933056|gb|AFW67607.1| phytochromeC2 [Zea mays]
          Length = 1135

 Score = 1073 bits (2776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/1116 (49%), Positives = 730/1116 (65%), Gaps = 63/1116 (5%)

Query: 23   KSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPPEGVPEEQIT 81
            +SS A+ K       ++     DA L A+FE    S + F+YS SV  +         ++
Sbjct: 13   RSSSARSK---HSARVVAQTPVDAQLHADFE---GSQRHFDYSSSVGAANRPSASTSTVS 66

Query: 82   AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGID 138
             YL  +QRG  IQPFGC+LAV   TF ++ YSEN  EMLDL   +    D      IG D
Sbjct: 67   TYLQNMQRGRYIQPFGCLLAVHPDTFALLAYSENAPEMLDLTPHAVPTIDQRDALTIGAD 126

Query: 139  ARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSK 198
             RTLF   S  +L KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP  
Sbjct: 127  VRTLFRSQSSVALHKAATFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPFN 184

Query: 199  SGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHD 258
              D  ++ AGA++S KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+
Sbjct: 185  PADVPVTAAGALKSYKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHE 244

Query: 259  DDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKEL 318
            D+HGEV+SE RRSDLEPYLG+H+PA DIPQA+RFLF +N++RMICD  A PV++IQ   L
Sbjct: 245  DEHGEVISECRRSDLEPYLGLHYPATDIPQASRFLFMKNKMRMICDFSATPVLIIQDGSL 304

Query: 319  KQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSM-------------KLWG 365
             QP+ L  STLR+ HGCH QYM NMGS+ASLVM+V IN  +               KLWG
Sbjct: 305  AQPVSLCGSTLRASHGCHAQYMANMGSVASLVMSVTINDDEEEDGDTDSDQQPKGRKLWG 364

Query: 366  LVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRD 425
            LVVCHHTSPR++PFPLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRD
Sbjct: 365  LVVCHHTSPRFVPFPLRYACEFLLQVFGIQLSKEVELAAQAKERHILRTQTLLCDMLLRD 424

Query: 426  APFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLST 485
            A   I TQSP++MDLVKCDGAALYY  +  ++G TP+ES++K IA WL  NH   TGLST
Sbjct: 425  ALVGIFTQSPNVMDLVKCDGAALYYQNQVLVLGSTPSESEIKSIATWLQENHDGSTGLST 484

Query: 486  DSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGG 544
            DSL EAGYPGAA L + VCGM   +I+SK+F+FWFRSHT KE+KW GAKH P +  DNG 
Sbjct: 485  DSLVEAGYPGAAALREVVCGMVAIKISSKNFIFWFRSHTTKEIKWSGAKHEPFDADDNGR 544

Query: 545  KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQ--EMEEENDSKVQGNTQQ 602
            KMHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++RDS Q  +    N   +      
Sbjct: 545  KMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRDSLQGEDANRNNIRSIVKAPSD 604

Query: 603  NGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKS 662
            +  K+QG+ EL +V  EMVRLIETATAP+  VD +G INGWN K AELTGLP  EA+G+ 
Sbjct: 605  DMKKLQGLLELRTVTNEMVRLIETATAPVLAVDIAGNINGWNKKAAELTGLPVMEAIGRP 664

Query: 663  LIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKN 722
            LID VV  +S   V+ ++  AL G E++N+E+KL+ F  Q+    V +++N+C SRD   
Sbjct: 665  LIDLVV-ADSVEVVKQILDSALQGIEEQNLEIKLKTFHEQECCGPVILMINSCCSRDLSE 723

Query: 723  NVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAME 782
             V GVCFV QD+T +K++MDK+ R+QGDY AII++ + LIPPIF  ++   C EWN AM+
Sbjct: 724  KVIGVCFVAQDLTRQKMIMDKYTRIQGDYVAIIKNPSELIPPIFMINDLGSCLEWNKAMQ 783

Query: 783  KVTGWMRHEVIG---------------------------------ITGQGTENFPFGFFN 809
            K+TG  R + I                                  I+GQ  E   FGFF 
Sbjct: 784  KITGMKREDAINKLLIGEVFTLHDYGCRVKDHATLTKLSILMNAVISGQDPEKLLFGFFG 843

Query: 810  RQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYI 869
              G+++E  LT ++RT+AEGK+ G  CF+ +  P+LQ ALE Q + +       KEL YI
Sbjct: 844  TGGKYIESLLTVNKRTNAEGKITGALCFLHVASPELQHALEVQKMSEQAATNSFKELTYI 903

Query: 870  RQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMEL 929
            RQE++NPLNG++F + LL+ S ++E+QRQ + ++  C+ Q+  I+   DL  IE+  ME 
Sbjct: 904  RQELRNPLNGMQFTYNLLKPSELTEDQRQLVSSNVLCQDQLKKILHDTDLESIEQCYMET 963

Query: 930  KSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCV 989
             + EF L   L+ V+ Q + L ++K + +  D P E+  + + GD IRLQ VL+D+L C 
Sbjct: 964  NTVEFNLEEALNTVLMQGIPLGKEKRISIERDWPVEVSHMYIYGDNIRLQQVLADYLACA 1023

Query: 990  VRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTP 1049
            ++     +G + ++V+P  + I    Q  H++FR+ HP  G+P  LI++M+   N   + 
Sbjct: 1024 LQFTQPAEGHIVLQVIPKKENIGSGMQIAHLEFRIVHPAPGVPEALIQEMFQ-HNPGVSR 1082

Query: 1050 EGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            EGLGL +S+KL+  M+G ++Y+RE     F+I +E 
Sbjct: 1083 EGLGLYISQKLVKTMSGTLQYLREADTSSFIILIEF 1118


>gi|2499555|sp|P93673.1|PHYA_LATSA RecName: Full=Phytochrome type A
 gi|1848273|gb|AAB47994.1| phytochrome type A [Lathyrus sativus]
          Length = 1124

 Score = 1070 bits (2768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/1131 (48%), Positives = 737/1131 (65%), Gaps = 66/1131 (5%)

Query: 18   NTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSR------SVISP 71
             T P +SS+   +  N  + II     DA L A FE+S   G SF+YS       SV   
Sbjct: 3    TTRPSQSSNNSGRSRNSAR-IIAQTTVDAKLHATFEES---GSSFDYSSWVRVSGSVDGD 58

Query: 72   PEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----E 127
             +    +  TAYL+ IQRG  IQPFGC+LA++E T +++ YSEN  EML + S +     
Sbjct: 59   QQPRSNKVTTAYLNHIQRGKQIQPFGCLLALDEKTCKVVAYSENAPEMLTMVSHAVPSVG 118

Query: 128  DFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
            D    G IG D RT+FT PS ++L KA    E+SLLNPILVH  +    KPFYAI+HR+ 
Sbjct: 119  DHPALG-IGTDIRTVFTAPSASALQKALGFAEVSLLNPILVHCKTSG--KPFYAIIHRVT 175

Query: 188  VGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTG 247
              ++ID EP K  +  ++ AGA+QS KLA  AI+RLQ+L  G +  LCDT+V++V +LTG
Sbjct: 176  GSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLASGSMERLCDTMVQEVFELTG 235

Query: 248  YDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHA 307
            YDRVM Y FH+DDHGEV++EI +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A
Sbjct: 236  YDRVMAYKFHEDDHGEVIAEIAKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNA 295

Query: 308  IPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-------- 359
              V V+Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N  D        
Sbjct: 296  KHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADA 355

Query: 360  -----SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRT 414
                   +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRT
Sbjct: 356  VLPQKKKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQILEKNILRT 415

Query: 415  QVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLL 474
            Q LLCDML+RDAP  IV+QSP+IMDLVKCDGAAL+Y  + WL+G TPTE Q+++IA W+ 
Sbjct: 416  QTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALFYRNKLWLLGATPTEYQIREIALWMS 475

Query: 475  NNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAK 534
              H D TGLSTDSL +AG+PGA  L   VCGMA  RITSKD +FWFRSHTA E++WGGAK
Sbjct: 476  EYHTDSTGLSTDSLLDAGFPGALSLSDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAK 535

Query: 535  HHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDS 594
            H P  +D+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++ ++ +  + +
Sbjct: 536  HEPGEQDDGRKMHPRSSFKAFLEVVKARSVPWKDFEMDAIHSLQLILRNASKDTDIIDLN 595

Query: 595  KVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLP 654
                NT+ N  K++G+ EL +V  EMVRLIETAT PI  VD  GT+NGWN K+AELTGLP
Sbjct: 596  TKAINTRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGTVNGWNIKIAELTGLP 655

Query: 655  ASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNA 714
              EA+GK L+  +V + S   V+ ++  AL GEE+KNV+ +++    Q +   + ++VNA
Sbjct: 656  VGEAIGKHLL-TLVEDSSTDIVKKMLNLALQGEEEKNVQFEIKTHGDQVEFGPISLIVNA 714

Query: 715  CTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACC 774
            C SRD + NV GVCFV QDIT +K +MDKF R++GDY+AI+Q+ N LIPPIF +DE   C
Sbjct: 715  CASRDLRENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWC 774

Query: 775  SEWNAAMEKVTGWMRHEVI---------------------------------GITGQGTE 801
             EWNAAM K+TGW R EV+                                  +TG  TE
Sbjct: 775  CEWNAAMIKLTGWKREEVMDKMLLGEVFGTQMSCCRLKNQEAFVNFGIVLNKAMTGLETE 834

Query: 802  NFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYA 861
               FGFF+R+G++VE  L+ S++ DAEG V G FCF+Q+  P+LQ AL  Q L +     
Sbjct: 835  KVAFGFFSRKGKYVECLLSVSKKIDAEGLVTGVFCFLQLASPELQQALHIQRLSEQTALK 894

Query: 862  KIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRC 921
            ++K L Y++++++NPL GI F  K+LE + +   Q+Q + TS  C+RQ+  I+D  DL  
Sbjct: 895  RLKVLTYMKRQIRNPLAGIVFSSKMLEGTDLETEQKQIVNTSSQCQRQLSKILDDSDLDG 954

Query: 922  IEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLV 981
            I +G ++L+  EF L  +L   +SQVM     K + + +D+ E I   SL GD +RLQ V
Sbjct: 955  IIDGYLDLEMAEFTLHEVLVTSLSQVMNRSNTKGIRIANDVAEHIAKESLYGDSLRLQQV 1014

Query: 982  LSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYN 1041
            L+DFL   +   P+    V    L   +L K     V+++  +TH G G+P   +  M+ 
Sbjct: 1015 LADFLLISINSTPNGGQVVIASSLTKEQLGKSV-HLVNLELSITHGGSGVPEAALNQMF- 1072

Query: 1042 GRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRGRQK 1092
            G N   + EG+ L +SRKLL +MNG VRY++E  K  F++ +EL    + K
Sbjct: 1073 GNNVLESEEGISLHISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAHKLK 1123


>gi|225450405|ref|XP_002278610.1| PREDICTED: phytochrome A1 [Vitis vinifera]
 gi|147838424|emb|CAN76586.1| hypothetical protein VITISV_020287 [Vitis vinifera]
 gi|183239014|gb|ACC60965.1| phytochrome A [Vitis vinifera]
 gi|296089871|emb|CBI39690.3| unnamed protein product [Vitis vinifera]
          Length = 1124

 Score = 1070 bits (2767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 547/1104 (49%), Positives = 734/1104 (66%), Gaps = 66/1104 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVP--EEQITAYLSKIQRGGLIQP 95
            II     DA L A+FE+S +S    +  R   +  +  P  ++  TAYL  IQ+G LIQP
Sbjct: 22   IIAQTTVDAKLHADFEESGSSFDYSSSVRFTPAGGDQQPRSDKVTTAYLHHIQKGKLIQP 81

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASL 151
            FG +LA++E TF++I YSEN  EML + S +     +  + G IG D RT+F+ PS ++L
Sbjct: 82   FGSLLALDEKTFKVIAYSENAPEMLTMVSHAVPSVGEHPVLG-IGTDVRTIFSGPSASAL 140

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             KA    E+SLLNPILVH  +    KPFYAI+HR+   ++ID EP K  +  ++ AGA+Q
Sbjct: 141  HKALGFGEVSLLNPILVHCKTSG--KPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQ 198

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            S KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FHDDDHGEVVSEI + 
Sbjct: 199  SYKLAAKAITRLQSLPSGSLERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEITKP 258

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
             LEPYLG+H+PA DIPQAARFLF +N+VRMICDC A  + V+Q ++L   L L  STLR+
Sbjct: 259  GLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHIQVLQDEKLPFDLTLCGSTLRA 318

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPRYIP 378
            PH CH+QYM NM SIASLVMAV++N  D               +LWGLVVCHHT+PR++P
Sbjct: 319  PHSCHVQYMENMNSIASLVMAVVVNDGDEEGESSNSGQPQKRKRLWGLVVCHHTTPRFVP 378

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLCDML+RDAP  IV+QSP++M
Sbjct: 379  FPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNVM 438

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAAL Y  + W +G+TP++ QL DI  WL   H D TGLSTDSL +AGYPGA  
Sbjct: 439  DLVKCDGAALLYKNKVWRLGITPSDFQLHDICSWLSEYHMDSTGLSTDSLYDAGYPGALA 498

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
            LG AVCGMA  +ITSKD LFWFRSHTA EV+WGGAKH P  KD+G KMHPRSSFKAFLEV
Sbjct: 499  LGDAVCGMAAVKITSKDTLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKAFLEV 558

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
            VK RS PW+  E++AIHSLQ+++R++F++ E  + +    +T+ N  K++G+ EL +V  
Sbjct: 559  VKTRSLPWKDYEMDAIHSLQLILRNAFKDSEAMDVNTNAIHTKLNDLKIEGMQELEAVTS 618

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETA+ PI  VD  G +NGWN K++ELT LP  +A+G  L+  +V + S   V+ 
Sbjct: 619  EMVRLIETASVPILAVDVDGLVNGWNTKISELTSLPVDKAIGMHLL-TLVEDSSADTVKK 677

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            ++  AL G+E++NV+ +++    ++    + ++VNAC SRD   NV GVCFV QDIT +K
Sbjct: 678  MLHLALQGQEEQNVQFEIKTHGSKRDSGPISLVVNACASRDLHENVVGVCFVAQDITSQK 737

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV------ 792
             +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN AM K++GW R EV      
Sbjct: 738  TVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMVKLSGWNREEVMDKMLL 797

Query: 793  ---------------------IGI------TGQGTENFPFGFFNRQGQFVEVALTASRRT 825
                                 +GI      TG+ +E   FGFF++ G++VE  L+ S++ 
Sbjct: 798  GEVFGTHMACCRLKNREAFVGLGIVLNSVMTGRESEKVSFGFFSKSGKYVECLLSVSKKL 857

Query: 826  DAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHK 885
            D EG V G FCF+Q+   +LQ AL  Q L +     ++K LAYI++++KNPL+GI F  K
Sbjct: 858  DREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKALAYIKRQIKNPLSGIIFSRK 917

Query: 886  LLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVS 945
            ++E + + E Q+Q L TS  C+RQ+  I+D  DL  I EG ++L+  EF L  +L A +S
Sbjct: 918  MMEDTDLGEEQQQILHTSAQCQRQLSKILDDHDLDSIIEGYLDLEMVEFTLREVLVASIS 977

Query: 946  QVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVL 1005
            QVM+    K + +++D  E I   +L GD +RLQ VL+DFL   V   P   G  ++ V 
Sbjct: 978  QVMIKSNGKGIQIVNDAEEGIMTETLYGDGLRLQQVLADFLLISVNFTP---GGGQLSV- 1033

Query: 1006 PGLKLIKD----ADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
                LIKD    +   VH++ R+TH G G+P  L+  M+ G N   + EG+ L +SRKL+
Sbjct: 1034 -AASLIKDRLGESVHLVHLELRITHAGNGVPEQLLNQMF-GNNGDASEEGISLLISRKLV 1091

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
             +MNG V+Y+RE  K  F+I +EL
Sbjct: 1092 KLMNGDVQYLREAGKSTFIISIEL 1115


>gi|183239022|gb|ACC60969.1| phytochrome A [Vitis riparia]
          Length = 1124

 Score = 1068 bits (2762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/1104 (49%), Positives = 734/1104 (66%), Gaps = 66/1104 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVP--EEQITAYLSKIQRGGLIQP 95
            II     DA L A+FE+S +S    +  R   +  +  P  ++  TAYL  IQ+G LIQP
Sbjct: 22   IIAQTTVDAKLHADFEESGSSFDYSSSVRFTPAGGDQQPRSDKVTTAYLHHIQKGKLIQP 81

Query: 96   FGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASL 151
            FG +LA+++ TF++I YSEN  EML + S +     +  + G IG D RT+F+ PS ++L
Sbjct: 82   FGSLLALDDKTFKVIAYSENAPEMLTMVSHAVPSVGEHPVLG-IGTDVRTIFSGPSASAL 140

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             KA    E+SLLNPILVH  +    KPFYAI+HR+   ++ID EP K  +  ++ AGA+Q
Sbjct: 141  HKALGFGEVSLLNPILVHCKTSG--KPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQ 198

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            S KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FHDDDHGEVVSEI + 
Sbjct: 199  SYKLAAKAITRLQSLPSGSLERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEITKP 258

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
             LEPYLG+H+PA DIPQAARFLF +N+VRMICDC A  + V+Q ++L   L L  STLR+
Sbjct: 259  GLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHIQVLQDEKLPFDLTLCGSTLRA 318

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPRYIP 378
            PH CH+QYM NM SIASLVMAV++N  D               +LWGLVVCHHT+PR++P
Sbjct: 319  PHSCHVQYMENMNSIASLVMAVVVNDGDEEGESSNSGQPQKRKRLWGLVVCHHTTPRFVP 378

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLCDML+RDAP  IV+QSP++M
Sbjct: 379  FPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNVM 438

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAAL Y  + W +G+TP++ QL DI  WL   H D TGLSTDSL +AGYPGA  
Sbjct: 439  DLVKCDGAALLYKNKVWRLGITPSDFQLHDICSWLSEYHMDSTGLSTDSLYDAGYPGALA 498

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
            LG AVCGMA  +ITSKD LFWFRSHTA EV+WGGAKH P  KD+G KMHPRSSFKAFLEV
Sbjct: 499  LGDAVCGMAAVKITSKDTLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKAFLEV 558

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
            VK RS PW+  E++AIHSLQ+++R++F++ E  + +    +T+ N  K++G+ EL +V  
Sbjct: 559  VKTRSLPWKDYEMDAIHSLQLILRNAFKDSEAMDVNTNAIHTKLNDLKIEGMQELEAVTS 618

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETA+ PI  VD  G +NGWN K++ELT LP  +A+G  L+  +V + S   V+ 
Sbjct: 619  EMVRLIETASVPILAVDVDGLVNGWNTKISELTSLPVDKAIGMHLL-TLVEDSSADTVKK 677

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            ++  AL G+E++NV+ +++    ++    + ++VNAC SRD   NV GVCFV QDIT +K
Sbjct: 678  MLHLALQGQEEQNVQFEIKTHGSKRDSGPISLVVNACASRDLDENVVGVCFVAQDITSQK 737

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV------ 792
             +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN AM K++GW R EV      
Sbjct: 738  TVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMVKLSGWNREEVMDKMLL 797

Query: 793  ---------------------IGI------TGQGTENFPFGFFNRQGQFVEVALTASRRT 825
                                 +GI      TG+ +E   FGFF++ G++VE  L+ S++ 
Sbjct: 798  GEVFGTHMACCRLKNREAFVGLGIVLNSVMTGRESEKVSFGFFSKSGKYVECLLSVSKKL 857

Query: 826  DAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHK 885
            D EG V G FCF+Q+   +LQ AL  Q L +     ++K LAYI++++KNPL+GI F  K
Sbjct: 858  DREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKALAYIKRQIKNPLSGIIFSRK 917

Query: 886  LLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVS 945
            ++E + + E Q+Q L TS  C+RQ+  I+D  DL  I EG ++L+  EF L  +L A +S
Sbjct: 918  MMEDTDLGEEQQQILHTSAQCQRQLSKILDDHDLDSIIEGYLDLEMVEFTLREVLVASIS 977

Query: 946  QVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVL 1005
            QVM+    K + +++D  E I   +L GD +RLQ VL+DFL   V   P   G  ++ V 
Sbjct: 978  QVMIKSNGKGIQIVNDAEEGIMTETLYGDGLRLQQVLADFLLISVNFTP---GGGQLSV- 1033

Query: 1006 PGLKLIKD----ADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
                LIKD    +   VH++ R+TH G G+P  L+  M+ G N   + EG+ L +SRKL+
Sbjct: 1034 -AASLIKDRLGESVHLVHLELRITHAGNGVPEQLLNQMF-GNNGDASEEGISLLISRKLV 1091

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
             +MNG V+Y+RE  K  F+I +EL
Sbjct: 1092 KLMNGDVQYLREAGKSTFIISIEL 1115


>gi|77963962|gb|ABB13323.1| phytochrome B [Hordeum vulgare subsp. vulgare]
 gi|77963964|gb|ABB13324.1| phytochrome B [Hordeum vulgare subsp. vulgare]
 gi|77963966|gb|ABB13325.1| phytochrome B [Hordeum vulgare subsp. vulgare]
          Length = 814

 Score = 1068 bits (2761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/780 (66%), Positives = 621/780 (79%), Gaps = 26/780 (3%)

Query: 39  IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
           +  Y  DAGL A FEQS ASG+SF+YS+S+++PP    E+QI AYLS+IQRGG IQPFGC
Sbjct: 2   VAQYTLDAGLHAVFEQSGASGRSFDYSQSLLAPPTPSSEQQIAAYLSRIQRGGHIQPFGC 61

Query: 99  MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL-------IGIDARTLFTPPSGAS 150
            LAV ++ +FR++ +SEN  ++LDL        L+         +G DAR LF+P SG  
Sbjct: 62  TLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSSAAPPPVSLGADARLLFSPSSGVL 121

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L +A A+REISLLNP+ +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAV
Sbjct: 122 LERAFAAREISLLNPLWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAV 179

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FHDD+HGEV++E RR
Sbjct: 180 QSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYKFHDDEHGEVLAESRR 239

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
            DLEPYLG+H+PA DIPQA+RFLF+QNRVRMI DCHA  V VIQ   + QPLCLV STLR
Sbjct: 240 GDLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHAAAVRVIQDPAMPQPLCLVGSTLR 299

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVVCHHTSPRYI 377
           SPHGCH QYM NMGSIASLVMAVII+S               +MKLWGLVVCHHTSPR I
Sbjct: 300 SPHGCHAQYMANMGSIASLVMAVIISSGGEDEHNMTRGVIPSAMKLWGLVVCHHTSPRCI 359

Query: 378 PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
           PFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSI
Sbjct: 360 PFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSI 419

Query: 438 MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
           MDLVKCDGAAL+Y G+ + +GVTPTE+Q+KDI  WL   HGD TGLSTDSLA+AGYPGA 
Sbjct: 420 MDLVKCDGAALFYHGKYYPLGVTPTEAQIKDIIEWLTVCHGDSTGLSTDSLADAGYPGAT 479

Query: 498 LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
            LG AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLE
Sbjct: 480 ALGDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLE 539

Query: 558 VVKNRSFPWEVSEINAIHSLQIVMRDSFQEM-EEENDSK--VQGNTQQNGSKMQGVDELS 614
           VVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DELS
Sbjct: 540 VVKSRSLPWENAEMDAIHSLQLILRDSFRDAGEGTSNSKAIVNGQVQLGELELRGIDELS 599

Query: 615 SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
           SVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSLI +++ +ES+ 
Sbjct: 600 SVAREMVRLIETATVPIFAVDTYGCINGWNAKVAELTGLTVEEAMGKSLIKDLIFKESEE 659

Query: 675 AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
            VE L+ +AL GEE  NVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQDI
Sbjct: 660 IVEKLLSQALRGEEGTNVEIKLKTFGSEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDI 719

Query: 735 THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
           T +KV+MDKF+ +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AME +TGW R EV+G
Sbjct: 720 TGQKVVMDKFVNIQGDYKAIVHNPNPLIPPIFASDENICCSEWNTAMENLTGWSRGEVVG 779


>gi|261865351|gb|ACY01932.1| phytochrome A [Beta vulgaris]
          Length = 1125

 Score = 1066 bits (2756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1138 (48%), Positives = 741/1138 (65%), Gaps = 83/1138 (7%)

Query: 18   NTTPFKSSDAKMKPVNKGKT-----IIDHYNADAGLLAEFEQSVASGKSFNYSRSVIS-- 70
            ++TP + S+      N G++     I+     DA L A+FE+S +     +  R+  S  
Sbjct: 3    SSTPSQGSN------NSGRSKHSVRIMAQTIVDAKLHADFEESSSEFDYSSSVRATTSSS 56

Query: 71   ----PPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS 126
                PP+   ++  ++YL +IQ+G LIQPFGC+LA++E TFR++ YS+N  EML + S +
Sbjct: 57   AGKQPPKS--DKVTSSYLLQIQKGKLIQPFGCLLALDEKTFRVVAYSDNAPEMLTMVSHA 114

Query: 127  ----EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAI 182
                 D  + G IG D RT+FT PS ++L KA    ++SLLNPILVH  +    KPFYAI
Sbjct: 115  VPSVGDHPVIG-IGTDVRTIFTAPSASALQKALGFADVSLLNPILVHCKTSG--KPFYAI 171

Query: 183  LHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
            +HR+   +VID EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G+I  L DT+V++V
Sbjct: 172  IHRVTGSLVIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGNISRLVDTMVQEV 231

Query: 243  QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
             +LTGYDRVM Y FHDDDHGEV+SEI + DLEPYLG+H+PA DIPQAARFLF +N+VRMI
Sbjct: 232  YELTGYDRVMAYKFHDDDHGEVISEITKPDLEPYLGLHYPATDIPQAARFLFMKNKVRMI 291

Query: 303  CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-- 360
            CDC A  V VIQ ++L   L L  STLR+PHGCH QYM NM SI SLVMAV++N +D   
Sbjct: 292  CDCRAKYVQVIQDEKLPFDLTLCGSTLRAPHGCHAQYMENMNSIGSLVMAVVVNDEDEDD 351

Query: 361  -----------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEK 409
                        +LWGLVVCHHTSPR++PFPLRYACEFL Q F++ +  EL++  Q  EK
Sbjct: 352  NASAPPQSQKRKRLWGLVVCHHTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQFLEK 411

Query: 410  NILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDI 469
             ILRTQ LLCDML+RD P  IVTQSP+IMDLVKCDGA L Y    W +GVTPT+ Q++DI
Sbjct: 412  KILRTQTLLCDMLMRDVPLGIVTQSPNIMDLVKCDGAVLLYNSNIWKIGVTPTDYQIRDI 471

Query: 470  AWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVK 529
            A WL  +H D TGLSTDSL +AGYPGA  LG  VCGMA  RIT KD LFWFRSHTA EVK
Sbjct: 472  AVWLSLDHQDSTGLSTDSLYDAGYPGALALGDTVCGMAAVRITLKDMLFWFRSHTAAEVK 531

Query: 530  WGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME 589
            WGGAKH P  KD+G KMHPRSSFKAFLEVVKNRS PW+  E++AIHSLQ+++R++F++ E
Sbjct: 532  WGGAKHQPGEKDDGAKMHPRSSFKAFLEVVKNRSVPWKDFEMDAIHSLQLILRNAFKDKE 591

Query: 590  EENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAE 649
              + +    +++ +  K+ G  EL +V  EMVRLIETAT PIF VD+ G +NGWN K++E
Sbjct: 592  AADLNTSVIHSKISDLKIDGYRELEAVTGEMVRLIETATVPIFAVDADGLVNGWNTKISE 651

Query: 650  LTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVY 709
            LTGLP +EA+GK  I  +V + S   V NL+  AL G+E+K+V+ ++++ +       + 
Sbjct: 652  LTGLPVTEAVGKH-IAALVEDCSIDTVRNLLQLALQGKEEKDVQFEIKRHQSMVDTGPIS 710

Query: 710  ILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASD 769
            ++VNAC S+D   NV GVCF+ QDIT +K +MDKF R++GDY+AI+Q+ NPLIPPIF +D
Sbjct: 711  LVVNACASKDVNGNVIGVCFIAQDITGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTD 770

Query: 770  ENACCSEWNAAMEKVTGWMRHEVI---------------------------------GIT 796
            E   CSEWN AM K+TG+ R EV+                                  ++
Sbjct: 771  EFGWCSEWNPAMSKLTGYKREEVMDKMLLGEVFGTHKSCCRLKNQEAFVNLGVVLNGAMS 830

Query: 797  GQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLED 856
            GQ TE  P GFF R G+++E  L  +++ D EG V G FCF+Q+   DLQ AL  Q L +
Sbjct: 831  GQDTEKVPIGFFTRTGKYIECLLCVNKKLDREGAVTGVFCFLQLASQDLQHALHVQRLAE 890

Query: 857  MDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDG 916
                 ++K LAY++++++NPL GI F  KLLE + + E QR  L TS  C+RQ+  I+D 
Sbjct: 891  QAASKRLKALAYMKRQIRNPLCGIMFSRKLLEGTDLGEEQRLLLHTSAQCQRQLNKILDD 950

Query: 917  MDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRI 976
             DL CI +G +EL+  EF + ++L A +SQVM    +K + +  +  EE    +L GD +
Sbjct: 951  SDLDCIIDGYLELEMVEFSMQDVLVASISQVMTKSNEKGIRIKSECGEECMRETLYGDSV 1010

Query: 977  RLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKD----ADQFVHVQFRLTHPGEGIP 1032
            RLQ +L+DFL   V   P+  G V I V    +LIKD    + Q  +++FR+ H G GI 
Sbjct: 1011 RLQQILADFLLISVNCTPA-GGDVGITV----RLIKDKIGESVQLGNLEFRILHTGGGIS 1065

Query: 1033 SHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRGR 1090
              L+  M+       T +G+ L +SRKL+ +MNG ++Y+R      F+I +EL    R
Sbjct: 1066 EELLGQMFESTGD-ATEDGISLLISRKLVKLMNGDIQYLRSAGSSTFIISVELAVADR 1122


>gi|464383|sp|P30733.2|PHYA_SOLTU RecName: Full=Phytochrome A
 gi|7550158|gb|AAB21533.2| type A phytochrome [Solanum tuberosum]
          Length = 1123

 Score = 1065 bits (2755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/1104 (49%), Positives = 732/1104 (66%), Gaps = 65/1104 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV----ISPPEGVPEEQ--ITAYLSKIQRGG 91
            II   + DA L A+FE+S   G SF+YS SV    ++  E  P+     TAYL +IQ+G 
Sbjct: 22   IIAQTSIDAKLHADFEES---GDSFDYSSSVRVTNVAEGEQRPKSDKVTTAYLHQIQKGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
             IQPFGC+LA++E T ++I +SEN  EML + S +     +  + G IGID RT+FT PS
Sbjct: 79   FIQPFGCLLALDEKTLKVIAFSENAPEMLTMVSHAVPSVGEHPVLG-IGIDIRTIFTGPS 137

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
            GA+L KA    E+SLLNP+LVH  +    KPFYAI+HR+   ++ID EP K  +  ++ A
Sbjct: 138  GAALQKALGFGEVSLLNPVLVHCKNSG--KPFYAIVHRVTGSLIIDFEPVKPYEVPMTAA 195

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FHDDDHGEVVSE
Sbjct: 196  GALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMGYKFHDDDHGEVVSE 255

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  LEPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V V+Q ++L   L L  S
Sbjct: 256  ITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLCGS 315

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSP 374
            TLR+PH CHLQYM NM SIASLVMAV++N  D               +LWGLVV H+T+P
Sbjct: 316  TLRAPHYCHLQYMENMNSIASLVMAVVVNDGDEEGESSDSSQSQKRKRLWGLVVSHNTTP 375

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            R+ PFPLRYACEFL Q F++ +  EL++  Q  EKNILRTQ LLCDML+RDAP  IV+QS
Sbjct: 376  RFAPFPLRYACEFLAQVFAILVNKELELENQFLEKNILRTQTLLCDMLMRDAPLGIVSQS 435

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYP 494
            P+IMDL+KCDGAAL Y  +   +G+ P++ QL DI  WL   H D TGLSTDSL +AG+P
Sbjct: 436  PNIMDLIKCDGAALLYKNKIHRLGMNPSDFQLHDIVSWLCEYHTDSTGLSTDSLYDAGFP 495

Query: 495  GAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKA 554
            GA  LG AVCGMA  RI+ KD+LFW+RSHTA EV+WGGAKH P  KD+G KMHPRSSFK 
Sbjct: 496  GALALGDAVCGMAAVRISDKDWLFWYRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKG 555

Query: 555  FLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELS 614
            FLEVVK RS PW+  E++ IHSLQ+++R++F++ +  N + +  +T+ N  K+ G+ EL 
Sbjct: 556  FLEVVKTRSIPWKDYEMDRIHSLQLILRNAFKDADAVNSNTISIHTKLNDLKIDGMQELE 615

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            +V  EMVRLIETA+ PIF VD  G +NGWN KVAELTGLP  EA+GK L+  +V + S  
Sbjct: 616  AVTAEMVRLIETASVPIFAVDVDGQVNGWNTKVAELTGLPVDEAIGKHLL-TLVEDSSVD 674

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  ++  AL G+E++NVE +++     +  S + ++VNAC S+D +++V GVCF+ QDI
Sbjct: 675  TVNKMLELALQGQEERNVEFEIKTHGPSRDSSPISLIVNACASKDVRDSVVGVCFIAQDI 734

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI- 793
            T +K +MDKF R++GDY AIIQ+ +PLIPPIF +D+   CSEWN+AM  +TGW R +V+ 
Sbjct: 735  TGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTMLTGWRRDDVMD 794

Query: 794  --------------------------------GITGQGTENFPFGFFNRQGQFVEVALTA 821
                                             ITGQ +E  PFGFF R G++VE  L  
Sbjct: 795  KMLLGEVFGTQAACCRLKNQEAFVNFGVILNNAITGQESEKIPFGFFARYGKYVECLLCV 854

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            S+R D EG V G FCF+Q+   +LQ AL  Q L +     ++K LAYIR++++NPL+GI 
Sbjct: 855  SKRLDKEGAVTGLFCFLQLASHELQQALHVQRLSEQTALKRLKVLAYIRRQIRNPLSGII 914

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F  K+LE +S+ E Q+  L TS  C+RQ+  I+D  DL  I EG ++L+  EF L  +L 
Sbjct: 915  FSRKMLEGTSLGEEQKNILHTSAQCQRQLDKILDDTDLDSIIEGYLDLEMLEFKLHEVLV 974

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
            A +SQVM+    KN+ + +D+ E++   +L GD  RLQ VL++FL   V   PS  G + 
Sbjct: 975  ASISQVMMKSNGKNIMISNDMVEDLLNETLYGDSPRLQQVLANFLLVSVNSTPS-GGKLS 1033

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            I        I ++ Q   ++FR+ H G G+P  L+  M+ G     + EG+ L +SRKL+
Sbjct: 1034 ISGKLTKDRIGESVQLALLEFRIRHTGGGVPEELLSQMF-GSEADASEEGISLLVSRKLV 1092

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
             +MNG V+Y+RE  +  F+I +EL
Sbjct: 1093 KLMNGEVQYLREAGRSTFIISVEL 1116


>gi|39980618|gb|AAR33029.1| phytochrome C [Sorghum bicolor subsp. verticilliflorum]
          Length = 1135

 Score = 1065 bits (2755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/1104 (50%), Positives = 734/1104 (66%), Gaps = 66/1104 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQ 94
            ++     DA L AEFE   +S ++F+YS SV   I P   V    ++ Y   +QRG  IQ
Sbjct: 25   VVAQTPVDAQLHAEFE---SSQRNFDYSSSVSAAIRP--SVSTSTVSTYHQTMQRGLYIQ 79

Query: 95   PFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASL 151
            PFGC+LAV   TF ++ YSEN  EMLDL   +    D      +G D RTLF   S  +L
Sbjct: 80   PFGCLLAVHPDTFTLLAYSENAPEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSSVAL 139

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++
Sbjct: 140  HKAATFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPVDVPVTAAGALK 197

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            S KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV+SE RRS
Sbjct: 198  SYKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVISECRRS 257

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            DLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A  V +IQ   L QPL L  STLR+
Sbjct: 258  DLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATLVKIIQDDSLAQPLSLCGSTLRA 317

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPRYIP 378
             HGCH QYM NMGS+ASLVM+V I++ +               KLWGLVVCHHTSPR++P
Sbjct: 318  SHGCHAQYMANMGSVASLVMSVTISNDEEEDVDTGSDQQPKGRKLWGLVVCHHTSPRFVP 377

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++M
Sbjct: 378  FPLRYACEFLLQVFGIQLNKEVELAAQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVM 437

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALYY  +  L+G TP+ES++K IA WL  NH   TGLSTDSL EAGYPGAA 
Sbjct: 438  DLVKCDGAALYYQNQLLLLGSTPSESEIKSIATWLQENHDGSTGLSTDSLVEAGYPGAAA 497

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLE 557
            L + VCGMA  +I+SKDF+FWFRSHT KE+KWGGAKH P +  DNG KMHPRSSFKAFLE
Sbjct: 498  LREVVCGMAAIKISSKDFIFWFRSHTTKEIKWGGAKHEPVDADDNGRKMHPRSSFKAFLE 557

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELS 614
            VVK RS PWE  EI+AIHSLQ+++R S Q+ E+ N + V+   +    +  K+QG+ EL 
Sbjct: 558  VVKWRSVPWEDVEIDAIHSLQLILRGSLQD-EDANRNNVRSIVKAPPDDTKKIQGLLELR 616

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            +V  EMVRLIETATAP+  VD +G INGWN K AELTGLP  EA+G+ LID VV  +S  
Sbjct: 617  TVTNEMVRLIETATAPVLAVDIAGNINGWNNKAAELTGLPVMEAIGRPLIDLVV-VDSIE 675

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V+ ++  AL G E++N+E+KL+ F  Q+ +  + ++VN+C SRD    V GVCFVGQD+
Sbjct: 676  VVKRILDSALQGIEEQNLEIKLKAFHEQECNGPIILMVNSCCSRDLSEKVIGVCFVGQDL 735

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +K++MDK+ R+QGDY AI+++ + LIPPIF  ++   C EWN AM+K+TG  R +VI 
Sbjct: 736  TTQKMIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNKAMQKITGIQREDVID 795

Query: 795  ---------------------------------ITGQGTENFPFGFFNRQGQFVEVALTA 821
                                             I+GQ  E   FGFF+  G+++E  LT 
Sbjct: 796  KLLIGEVFTLHDYGCRVKDHATLTKLSILMNAVISGQDPEKLLFGFFDTDGKYIESLLTV 855

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++R +AEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YI QE++NPLNG++
Sbjct: 856  NKRINAEGKITGAICFLHVASPELQHALQVQKMSEQAATNSFKELTYIHQELRNPLNGMQ 915

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F   LLE S ++E QR+ L ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+
Sbjct: 916  FTCNLLEPSELTEEQRKLLSSNILCQDQLKKILHDTDLESIEQCYMEMNTVEFNLEEALN 975

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
             V+ Q + L ++K + +  D P EI  + L GD +RLQ VL+D+L C ++     +G + 
Sbjct: 976  TVLMQGIPLGKEKRISIERDWPVEISRMYLYGDNLRLQQVLADYLACALQFTQPAEGPIV 1035

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            ++V+P  + I    Q  H++FR+ HP  G+P  LI++M+   N   + EGLGL + +KL+
Sbjct: 1036 LQVIPKKENIGSGMQIAHLEFRIVHPAPGVPEALIQEMFR-HNPEVSREGLGLYICQKLV 1094

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
              M+G V+Y+RE     F+I +E 
Sbjct: 1095 KTMSGTVQYLREADTSSFIILIEF 1118


>gi|76574169|gb|ABA46868.1| phytochrome A [Solanum tuberosum]
          Length = 1123

 Score = 1065 bits (2754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/1104 (49%), Positives = 733/1104 (66%), Gaps = 65/1104 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV----ISPPEGVPEEQ--ITAYLSKIQRGG 91
            II   + DA L A+FE+S   G SF+YS SV    ++  E  P+     TAYL +IQ+G 
Sbjct: 22   IIAQTSIDAKLHADFEES---GDSFDYSSSVRVTSVAGDEERPKSDKVTTAYLHQIQKGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
             IQPFG +LA++E T ++I +SEN  EML + S +     +  + G IG D RT+FT PS
Sbjct: 79   FIQPFGSLLALDEKTLKVIAFSENAPEMLTMVSHAVPSVGEHPVLG-IGTDIRTIFTGPS 137

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
            GA+L KA    E+SLLNP+LVH  +    KPFYAI+HR+   ++ID EP K  +  ++ A
Sbjct: 138  GAALQKALGFGEVSLLNPVLVHCKNSG--KPFYAIVHRVTGSLIIDFEPVKPYEVPMTAA 195

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FHDDDHGEVVSE
Sbjct: 196  GALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMGYKFHDDDHGEVVSE 255

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  LEPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V V+Q ++L   L L  S
Sbjct: 256  ITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLCGS 315

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSP 374
            TLR+PH CHLQYM NM S+ASLVMAV++N  D               +LWGLVVCH+T+P
Sbjct: 316  TLRAPHYCHLQYMENMNSVASLVMAVVVNDGDEEGESSDSSQSQKRKRLWGLVVCHNTTP 375

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            R++PFPLRYACEFL Q F++ +  EL++  Q  EKNILRTQ LLCDML+RDAP  IV+QS
Sbjct: 376  RFVPFPLRYACEFLAQVFAIHVNKELELENQFLEKNILRTQTLLCDMLMRDAPLGIVSQS 435

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYP 494
            P+IMDLVKCDGAAL Y  +   +G+ P++ QL DI  WL   H D TGLSTDSL +AG+P
Sbjct: 436  PNIMDLVKCDGAALLYKNKIHRLGMNPSDFQLHDIVSWLCEYHTDSTGLSTDSLYDAGFP 495

Query: 495  GAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKA 554
            GA  LG AVCGMA  RI+ KD+LFW+RSHTA EV+WGGAKH P  KD+G KMHPRSSFKA
Sbjct: 496  GALALGDAVCGMAAVRISDKDWLFWYRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKA 555

Query: 555  FLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELS 614
            FLEVVK RS PW+  E++AIHSLQ+++R++F++ +  N +    +T+ N  ++ G+ EL 
Sbjct: 556  FLEVVKTRSIPWKDYEMDAIHSLQLILRNAFKDADAVNSNTNSIHTKLNDLRIDGMQELE 615

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            +V  EM+RLIETA+ PIF VD  G +NGWN KVAELTGLP  EA+GK L+  +V + S  
Sbjct: 616  AVTAEMIRLIETASVPIFAVDVDGQVNGWNTKVAELTGLPVDEAIGKHLL-TLVEDSSVD 674

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  ++  AL G+E++NVE +++     +  S + ++VNAC S+D +++V GVCF+ QDI
Sbjct: 675  TVNKMLELALQGKEERNVEFEIKAHGPSRDSSPISLIVNACASKDVRDSVVGVCFIAQDI 734

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI- 793
            T +K +MDKF R++GDY AIIQ+ +PLIPPIF +D+   CSEWN+AM K+TGW R +V+ 
Sbjct: 735  TGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTKLTGWRRDDVMD 794

Query: 794  --------------------------------GITGQGTENFPFGFFNRQGQFVEVALTA 821
                                             ITGQ +E  PFGFF R G++VE  L  
Sbjct: 795  KMLLGEVFGTQAACCRLKNQEAFVNFGVILNNAITGQESEKIPFGFFGRYGKYVECLLCV 854

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            S+R D EG V G FCF+Q+   +LQ AL  Q L +     ++K LAYIR+++KNPL+GI 
Sbjct: 855  SKRLDKEGAVTGLFCFLQLASHELQQALHVQRLSEQTALKRLKVLAYIRRQIKNPLSGII 914

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F  K+LE +S+ E Q+  L TS  C+RQ+  I+D  DL  I EG ++L+  EF L  +L 
Sbjct: 915  FSWKMLEGTSLGEEQKNILHTSAQCQRQLNKILDDTDLDSIIEGYLDLEMLEFKLHEVLV 974

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
            A +SQVM+    KN+ + +D+ E++   +L GD  RLQ VL++FL   V   PS  G + 
Sbjct: 975  ASISQVMMKSNGKNIMISNDMVEDLLNETLYGDSPRLQQVLANFLLVSVNSTPS-GGQLS 1033

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            I        I ++ Q   ++FR+ H G G+P  L+  M  G     + EG+ L +SRKL+
Sbjct: 1034 ISGRLTKDRIGESVQLALLEFRIRHTGGGVPEELLSQML-GSEVDASEEGIFLLVSRKLV 1092

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
             +MNG V+Y+RE  +  F+I +EL
Sbjct: 1093 KLMNGEVQYLREAGRSTFIISVEL 1116


>gi|242038093|ref|XP_002466441.1| hypothetical protein SORBIDRAFT_01g007850 [Sorghum bicolor]
 gi|39980596|gb|AAR33018.1| phytochrome C [Sorghum bicolor]
 gi|39980598|gb|AAR33019.1| phytochrome C [Sorghum bicolor]
 gi|39980600|gb|AAR33020.1| phytochrome C [Sorghum bicolor]
 gi|39980622|gb|AAR33031.1| phytochrome C [Sorghum bicolor subsp. x drummondii]
 gi|241920295|gb|EER93439.1| hypothetical protein SORBIDRAFT_01g007850 [Sorghum bicolor]
          Length = 1135

 Score = 1065 bits (2753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1104 (50%), Positives = 734/1104 (66%), Gaps = 66/1104 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQ 94
            ++     DA L AEFE   +S ++F+YS SV   I P   V    ++ Y   +QRG  IQ
Sbjct: 25   VVAQTPVDAQLHAEFE---SSQRNFDYSSSVSAAIRP--SVSTSTVSTYHQTMQRGLYIQ 79

Query: 95   PFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASL 151
            PFGC+LAV   TF ++ YSEN  EMLDL   +    D      +G D RTLF   S  +L
Sbjct: 80   PFGCLLAVHPDTFTLLAYSENAPEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSSVAL 139

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++
Sbjct: 140  HKAATFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPVDVPVTAAGALK 197

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            S KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV+SE RRS
Sbjct: 198  SYKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVISECRRS 257

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            DLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A  V +IQ   L QPL L  STLR+
Sbjct: 258  DLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATLVKIIQDDSLAQPLSLCGSTLRA 317

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPRYIP 378
             HGCH QYM NMGS+ASLVM+V I++ +               KLWGLVVCHHTSPR++P
Sbjct: 318  SHGCHAQYMANMGSVASLVMSVTISNDEEEDVDTGSDQQPKGRKLWGLVVCHHTSPRFVP 377

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++M
Sbjct: 378  FPLRYACEFLLQVFGIQLNKEVELAAQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVM 437

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALYY  +  L+G TP+ES++K IA WL  NH   TGLSTDSL EAGYPGAA 
Sbjct: 438  DLVKCDGAALYYQNQLLLLGSTPSESEIKSIATWLQENHDGSTGLSTDSLVEAGYPGAAA 497

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLE 557
            L + VCGMA  +I+SKDF+FWFRSHT KE+KWGGAKH P +  DNG KMHPRSSFKAFLE
Sbjct: 498  LREVVCGMAAIKISSKDFIFWFRSHTTKEIKWGGAKHEPVDADDNGRKMHPRSSFKAFLE 557

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELS 614
            VVK RS PWE  E++AIHSLQ+++R S Q+ E+ N + V+   +    +  K+QG+ EL 
Sbjct: 558  VVKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANRNNVRSIVKAPPDDTKKIQGLLELR 616

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            +V  EMVRLIETATAP+  VD +G INGWN K AELTGLP  EA+G+ LID VV  +S  
Sbjct: 617  TVTNEMVRLIETATAPVLAVDIAGNINGWNNKAAELTGLPVMEAIGRPLIDLVV-VDSIE 675

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V+ ++  AL G E++N+E+KL+ F  Q+ +  + ++VN+C SRD    V GVCFVGQD+
Sbjct: 676  VVKRILDSALQGIEEQNLEIKLKAFHEQECNGPIILMVNSCCSRDLSEKVIGVCFVGQDL 735

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +K++MDK+ R+QGDY AI+++ + LIPPIF  ++   C EWN AM+K+TG  R +VI 
Sbjct: 736  TTQKMIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNKAMQKITGIQREDVID 795

Query: 795  ---------------------------------ITGQGTENFPFGFFNRQGQFVEVALTA 821
                                             I+GQ  E   FGFF+  G+++E  LT 
Sbjct: 796  KLLIGEVFTLHDYGCRVKDHATLTKLSILMNAVISGQDPEKLLFGFFDTDGKYIESLLTV 855

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++R +AEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YI QE++NPLNG++
Sbjct: 856  NKRINAEGKITGAICFLHVASPELQHALQVQKMSEQAATNSFKELTYIHQELRNPLNGMQ 915

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F   LLE S ++E QR+ L ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+
Sbjct: 916  FTCNLLEPSELTEEQRKLLSSNILCQDQLKKILHDTDLESIEQCYMEMNTVEFNLEEALN 975

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
             V+ Q + L ++K + +  D P EI  + L GD +RLQ VL+D+L C ++     +G + 
Sbjct: 976  TVLMQGIPLGKEKRISIERDWPVEISRMYLYGDNLRLQQVLADYLACALQFTQPAEGPIV 1035

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            ++V+P  + I    Q  H++FR+ HP  G+P  LI++M+   N   + EGLGL + +KL+
Sbjct: 1036 LQVIPKKENIGSGMQIAHLEFRIVHPAPGVPEALIQEMFR-HNPEVSREGLGLYICQKLV 1094

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
              M+G V+Y+RE     F+I +E 
Sbjct: 1095 KTMSGTVQYLREADTSSFIILIEF 1118


>gi|39980612|gb|AAR33026.1| phytochrome C [Sorghum bicolor subsp. verticilliflorum]
 gi|39980614|gb|AAR33027.1| phytochrome C [Sorghum bicolor subsp. verticilliflorum]
 gi|39980616|gb|AAR33028.1| phytochrome C [Sorghum bicolor subsp. verticilliflorum]
          Length = 1135

 Score = 1064 bits (2752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1104 (50%), Positives = 734/1104 (66%), Gaps = 66/1104 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQ 94
            ++     DA L AEFE   +S ++F+YS SV   I P   V    ++ Y   +QRG  IQ
Sbjct: 25   VVAQTPVDAQLHAEFE---SSQRNFDYSSSVSAAIRP--SVSTSTVSTYHQTMQRGLYIQ 79

Query: 95   PFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASL 151
            PFGC+LAV   TF ++ YSEN  EMLDL   +    D      +G D RTLF   S  +L
Sbjct: 80   PFGCLLAVHPDTFTLLAYSENAPEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSSVAL 139

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++
Sbjct: 140  HKAATFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPVDVPVTAAGALK 197

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            S KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV+SE RRS
Sbjct: 198  SYKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVISECRRS 257

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            DLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A  V +IQ   L QPL L  STLR+
Sbjct: 258  DLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATLVKIIQDDSLAQPLSLCGSTLRA 317

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPRYIP 378
             HGCH QYM NMGS+ASLVM+V I++ +               KLWGLVVCHHTSPR++P
Sbjct: 318  SHGCHAQYMANMGSVASLVMSVTISNDEEEDVDTGSDQQPKGRKLWGLVVCHHTSPRFVP 377

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++M
Sbjct: 378  FPLRYACEFLLQVFGIQLNKEVELAAQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVM 437

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALYY  +  L+G TP+ES++K IA WL  NH   TGLSTDSL EAGYPGAA 
Sbjct: 438  DLVKCDGAALYYQNQLLLLGSTPSESEIKSIATWLQENHDGSTGLSTDSLVEAGYPGAAA 497

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLE 557
            L + VCGMA  +I+SKDF+FWFRSHT KE+KWGGAKH P +  DNG KMHPRSSFKAFLE
Sbjct: 498  LREVVCGMAAIKISSKDFIFWFRSHTTKEIKWGGAKHEPVDADDNGRKMHPRSSFKAFLE 557

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELS 614
            VVK RS PWE  E++AIHSLQ+++R S Q+ E+ N + V+   +    +  K+QG+ EL 
Sbjct: 558  VVKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANRNNVRSIVKAPPDDTKKIQGLLELR 616

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            +V  EMVRLIETATAP+  VD +G INGWN K AELTGLP  EA+G+ LID VV  +S  
Sbjct: 617  TVTNEMVRLIETATAPVLAVDIAGNINGWNNKAAELTGLPVMEAIGRPLIDLVV-VDSIE 675

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V+ ++  AL G E++N+E+KL+ F  Q+ +  + ++VN+C SRD    V GVCFVGQD+
Sbjct: 676  VVKRILDSALQGIEEQNLEIKLKAFHEQECNGPIILMVNSCCSRDLSEKVIGVCFVGQDL 735

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +K++MDK+ R+QGDY AI+++ + LIPPIF  ++   C EWN AM+K+TG  R +VI 
Sbjct: 736  TTQKMIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNKAMQKITGIQREDVID 795

Query: 795  ---------------------------------ITGQGTENFPFGFFNRQGQFVEVALTA 821
                                             I+GQ  E   FGFF+  G+++E  LT 
Sbjct: 796  KLLIGEVFTLHDYGCRVKDHATLTKLSILMNAVISGQDPEKLLFGFFDTDGKYIESLLTV 855

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++R +AEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YI QE++NPLNG++
Sbjct: 856  NKRINAEGKITGAICFLHVASPELQHALQVQKMSEQAATNSFKELTYIHQELRNPLNGMQ 915

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F   LLE S ++E QR+ L ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+
Sbjct: 916  FTCNLLEPSELTEEQRKLLSSNILCQDQLKKILHDTDLESIEQCYMEMNTVEFNLEEALN 975

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
             V+ Q + L ++K + +  D P EI  + L GD +RLQ VL+D+L C ++     +G + 
Sbjct: 976  TVLMQGIPLGKEKRISIERDWPVEISRMYLYGDNLRLQQVLADYLACALQFTQPAEGPIV 1035

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            ++V+P  + I    Q  H++FR+ HP  G+P  LI++M+   N   + EGLGL + +KL+
Sbjct: 1036 LQVIPKKENIGSGMQIAHLEFRIVHPAPGVPEALIQEMFR-HNPEVSREGLGLYICQKLV 1094

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
              M+G V+Y+RE     F+I +E 
Sbjct: 1095 KTMSGTVQYLREADTSSFIILIEF 1118


>gi|39980602|gb|AAR33021.1| phytochrome C [Sorghum bicolor]
 gi|39980604|gb|AAR33022.1| phytochrome C [Sorghum bicolor]
          Length = 1135

 Score = 1064 bits (2751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1104 (50%), Positives = 733/1104 (66%), Gaps = 66/1104 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQ 94
            ++     DA L AEFE   +S ++F+YS SV   I P   V    ++ Y   +QRG  IQ
Sbjct: 25   VVAQTPVDAQLHAEFE---SSQRNFDYSSSVSAAIRP--SVSTSTVSTYHQTMQRGLYIQ 79

Query: 95   PFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASL 151
            PFGC+LAV   TF ++ YSEN  EMLDL   +    D      +G D RTLF   S  +L
Sbjct: 80   PFGCLLAVHPDTFTLLAYSENAPEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSSVAL 139

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D   + AGA++
Sbjct: 140  HKAATFGEVNLLNPILVHA--RTSRKPFYAILHRIDVGLVIDLEPVNPVDVPATAAGALK 197

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            S KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV+SE RRS
Sbjct: 198  SYKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVISECRRS 257

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            DLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A  V +IQ   L QPL L  STLR+
Sbjct: 258  DLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATLVKIIQDDSLAQPLSLCGSTLRA 317

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPRYIP 378
             HGCH QYM NMGS+ASLVM+V I++ +               KLWGLVVCHHTSPR++P
Sbjct: 318  SHGCHAQYMANMGSVASLVMSVTISNDEEEDVDTGSDQQPKGRKLWGLVVCHHTSPRFVP 377

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++M
Sbjct: 378  FPLRYACEFLLQVFGIQLNKEVELAAQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVM 437

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALYY  +  L+G TP+ES++K IA WL  NH   TGLSTDSL EAGYPGAA 
Sbjct: 438  DLVKCDGAALYYQNQLLLLGSTPSESEIKSIATWLQENHDGSTGLSTDSLVEAGYPGAAA 497

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLE 557
            L + VCGMA  +I+SKDF+FWFRSHT KE+KWGGAKH P +  DNG KMHPRSSFKAFLE
Sbjct: 498  LREVVCGMAAIKISSKDFIFWFRSHTTKEIKWGGAKHEPVDADDNGRKMHPRSSFKAFLE 557

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELS 614
            VVK RS PWE  E++AIHSLQ+++R S Q+ E+ N + V+   +    +  K+QG+ EL 
Sbjct: 558  VVKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANRNNVRSIVKAPPDDTKKIQGLLELR 616

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            +V  EMVRLIETATAP+  VD +G INGWN K AELTGLP  EA+G+ LID VV  +S  
Sbjct: 617  TVTNEMVRLIETATAPVLAVDIAGNINGWNNKAAELTGLPVMEAIGRPLIDLVV-VDSIE 675

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V+ ++  AL G E++N+E+KL+ F  Q+ +  + ++VN+C SRD    V GVCFVGQD+
Sbjct: 676  VVKRILDSALQGIEEQNLEIKLKAFHEQECNGPIILMVNSCCSRDLSEKVIGVCFVGQDL 735

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +K++MDK+ R+QGDY AI+++ + LIPPIF  ++   C EWN AM+K+TG  R +VI 
Sbjct: 736  TTQKMIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNKAMQKITGIQREDVID 795

Query: 795  ---------------------------------ITGQGTENFPFGFFNRQGQFVEVALTA 821
                                             I+GQ  E   FGFF+  G+++E  LT 
Sbjct: 796  KLLIGEVFTLHDYGCRVKDHATLTKLSILMNAVISGQDPEKLLFGFFDTDGKYIESLLTV 855

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++R +AEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YI QE++NPLNG++
Sbjct: 856  NKRINAEGKITGAICFLHVASPELQHALQVQKMSEQAATNSFKELTYIHQELRNPLNGMQ 915

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F   LLE S ++E QR+ L ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+
Sbjct: 916  FTCNLLEPSELTEEQRKLLSSNILCQDQLKKILHDTDLESIEQCYMEMNTVEFNLEEALN 975

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
             V+ Q + L ++K + +  D P EI  + L GD +RLQ VL+D+L C ++     +G + 
Sbjct: 976  TVLMQGIPLGKEKRISIERDWPVEISRMYLYGDNLRLQQVLADYLACALQFTQPAEGPIV 1035

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            ++V+P  + I    Q  H++FR+ HP  G+P  LI++M+   N   + EGLGL + +KL+
Sbjct: 1036 LQVIPKKENIGSGMQIAHLEFRIVHPAPGVPEALIQEMFR-HNPEVSREGLGLYICQKLV 1094

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
              M+G V+Y+RE     F+I +E 
Sbjct: 1095 KTMSGTVQYLREADTSSFIILIEF 1118


>gi|350536201|ref|NP_001234490.1| alternative transcript type 3 [Solanum lycopersicum]
 gi|3492795|emb|CAA05086.1| phyA [Solanum lycopersicum]
 gi|3492797|emb|CAA05087.1| phyA [Solanum lycopersicum]
 gi|3492799|emb|CAA05088.1| phyA [Solanum lycopersicum]
 gi|3492801|emb|CAA05089.1| phyA [Solanum lycopersicum]
          Length = 1123

 Score = 1064 bits (2751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/1104 (49%), Positives = 728/1104 (65%), Gaps = 65/1104 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            I+   + DA L A+FE+S   G SF+YS SV        EE+       TAYL +IQ+G 
Sbjct: 22   IVAQTSIDAKLHADFEES---GDSFDYSSSVRVTSVAGDEEKPKSDKVTTAYLHQIQKGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
             IQPFGC+LA++E T ++I +SEN  EML + S +     +  + G IG D RT+FT PS
Sbjct: 79   FIQPFGCLLALDEKTLKVIAFSENAPEMLTMVSHAVPSVGEHPVLG-IGTDIRTIFTGPS 137

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
            GA+L KA    E+SLLNP+LVH  +    KPFYAI+HR+   +++D EP K  +  ++ A
Sbjct: 138  GAALQKALGFGEVSLLNPVLVHCKNSG--KPFYAIVHRVTGSLILDFEPVKPYEVPMTAA 195

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FH+DDHGEVVSE
Sbjct: 196  GALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMGYKFHEDDHGEVVSE 255

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  LEPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V V+Q ++L   L L  S
Sbjct: 256  ITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLCGS 315

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSP 374
            TLR+PH CHLQYM NM SIASLVMAV++N  D               +LWGLVVCH+T+P
Sbjct: 316  TLRAPHYCHLQYMENMNSIASLVMAVVVNDGDEEGESSDSSQSQKRKRLWGLVVCHNTTP 375

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            R++PFPLRYACEFL Q F++ +  EL++  Q  EKNILRTQ LLCDML+RDAP  IV+QS
Sbjct: 376  RFVPFPLRYACEFLAQVFAIHVNKELELENQFLEKNILRTQTLLCDMLMRDAPLGIVSQS 435

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYP 494
            P+IMDLVKCDGAAL Y  +   +G+ P++ QL+DI  WL   H D TGLSTDSL +AG+P
Sbjct: 436  PNIMDLVKCDGAALLYKNKIHRLGMNPSDFQLQDIVSWLCEYHTDSTGLSTDSLYDAGFP 495

Query: 495  GAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKA 554
            GA  LG AVCGMA  RI+ KD+LFWFRSHTA EV+WGGAKH P  KD+G KMHPRSSFKA
Sbjct: 496  GALALGDAVCGMAAVRISDKDWLFWFRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKA 555

Query: 555  FLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELS 614
            FLEVVK RS PW+  E++AIHSLQ+++R++F++ E  N +      + N  K+ G+ EL 
Sbjct: 556  FLEVVKTRSIPWKDYEMDAIHSLQLILRNAFKDAEVVNSNTNSIYKKLNDLKIDGMQELE 615

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            SV  EMVRLIETA  PI  VD  G +NGWN K+AELTGLP  EA+GK L+  +V + S  
Sbjct: 616  SVTAEMVRLIETALVPILAVDVDGQVNGWNTKIAELTGLPVDEAIGKHLL-TLVEDSSVD 674

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V  ++  AL G+E+KNVE +++     +  S + ++VNAC S+D ++NV GVCF+  DI
Sbjct: 675  TVNKMLELALQGKEEKNVEFEIKTHGPSRDSSPISLIVNACASKDVRDNVVGVCFMAHDI 734

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI- 793
            T +K +MDKF R++GDY AIIQ+ +PLIPPIF +D+   CSEWN AM K+TGW R +V+ 
Sbjct: 735  TGQKSIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNTAMTKLTGWRRDDVMD 794

Query: 794  --------------------------------GITGQGTENFPFGFFNRQGQFVEVALTA 821
                                             ITGQ +E  PFGFF R G++VE  L  
Sbjct: 795  KMLLGEVFGTQAACCRLKNQEAFVNFGVVLNNAITGQESEKIPFGFFARYGKYVECLLCV 854

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            S+R D EG V G FCF+Q+   +LQ AL  Q L +     ++K LAYIR++++NPL+GI 
Sbjct: 855  SKRLDKEGAVTGLFCFLQLASHELQQALYVQRLSEQTALKRLKVLAYIRRQIRNPLSGII 914

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F  K+LE +S+ E Q+  L TS  C+RQ+  I+D  DL  I +G ++L+  EF L  +L 
Sbjct: 915  FSRKMLEGTSLGEEQKNILHTSAQCQRQLNKILDDTDLDSIIDGYLDLEMLEFKLHEVLV 974

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
            A +SQVM+    KN+ + +D+ E++   +L GD  RLQ VL++FL   V   PS  G + 
Sbjct: 975  ASISQVMMKSNGKNIMISNDMVEDLLNETLYGDSPRLQQVLANFLLVSVNATPS-GGQLS 1033

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            I        I ++ Q   ++FR+ H G G+P  L+  M+ G     + EG+ L +SRKL+
Sbjct: 1034 ISGRLTKDRIGESVQLALLEFRIRHTGGGVPEELLGQMF-GSEADASEEGISLLVSRKLV 1092

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
             +MNG V+Y+RE  +  F+I +EL
Sbjct: 1093 KLMNGEVQYLREAGQSTFIISVEL 1116


>gi|449453752|ref|XP_004144620.1| PREDICTED: phytochrome C-like [Cucumis sativus]
          Length = 1119

 Score = 1063 bits (2748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/1099 (49%), Positives = 724/1099 (65%), Gaps = 57/1099 (5%)

Query: 35   GKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV----ISPPEGVPEEQITAYLSKIQRG 90
            G  ++     DA L  +FE    S + F+YS SV          V    + +YL  IQRG
Sbjct: 22   GAHVVAQTPIDAKLHVDFE---GSERLFDYSASVDFNAACSTSNVHASTVQSYLLNIQRG 78

Query: 91   GLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGLI--GIDARTLFTPPS 147
             L+QPFGCM+AV+     ++ YSEN  EMLDL   +  + E    +  G D RTLF  P 
Sbjct: 79   SLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPG 138

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             A+L KAA  +E++LLNPILVH   R+  KPFYAILHR+DVG++IDLEP    D  ++ A
Sbjct: 139  AAALQKAADFKEVNLLNPILVHC--RTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAA 196

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA++S KLA  AIS+LQ L  G+I LLC+ +V++V  LTGYDRVM+Y FHDD+HGEVV+E
Sbjct: 197  GALKSYKLAAKAISKLQNLQSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAE 256

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
              RSDLEPY G+H+PA DIPQA+RFLF +N+VRMICDC A PV V+Q + L QPL L  S
Sbjct: 257  CCRSDLEPYFGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLAQPLSLCGS 316

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------MKLWGLVVCHHTSPRYIP 378
             LR+PHGCH +YM NMGSIASLVM++ IN  DS          KLWGLVVCHHTSPR++P
Sbjct: 317  ALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKDRKLWGLVVCHHTSPRFVP 376

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+Q F +Q+  E+++  QL EK+ILR Q +LCDMLLRDAP  IVTQSP+IM
Sbjct: 377  FPLRYACEFLIQVFGIQINKEVELQAQLKEKHILRIQTVLCDMLLRDAPVGIVTQSPNIM 436

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALY+  + W +GVTPTE+Q+++IA WLL +H   TGLSTDSL EAG+ GA+ 
Sbjct: 437  DLVKCDGAALYFRKKFWSLGVTPTEAQIRNIADWLLKDHSGSTGLSTDSLTEAGFYGASA 496

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
            LG  +CGMA  RITSKDFLFWFRSH AKE++WGGAKH P  +D+G KMHPRSSFKAFLEV
Sbjct: 497  LGDEICGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPSDEDDGRKMHPRSSFKAFLEV 556

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
            VK RS PWE  E++AIHSLQ+++R S Q+ E E + KV         K Q +DEL  +  
Sbjct: 557  VKRRSQPWEDVEMDAIHSLQLILRGSLQD-EIEEECKVITTVPPVDEKTQQLDELRVITN 615

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETA  PI  VD  G INGWN+K  ELTGL   EA+G  L+D VV+ +S   V+ 
Sbjct: 616  EMVRLIETAAVPILAVDVFGKINGWNSKATELTGLAIQEAIGMPLVDCVVN-DSVKVVKK 674

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            ++  A+ G E+KNVE+KL+ F    Q+  V + VN+C SRD  NNV G+ F+GQD+T +K
Sbjct: 675  MLSLAIQGIEEKNVEIKLKTFGTAVQNGPVILEVNSCCSRDLNNNVVGISFIGQDVTKQK 734

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794
            ++M+++ ++QGDY  I+++ + LIPPIF +D    C EWN AMEK++G+ R E+      
Sbjct: 735  LVMNQYTQIQGDYTGIMRNPSALIPPIFMADGEGRCLEWNDAMEKLSGFRRVEMTNRMLL 794

Query: 795  ----------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTD 826
                                        I+GQ TE F F F +R+G +VE  LTAS+RTD
Sbjct: 795  GEVFTLENFGCRVKDHTLTKLRIILHRVISGQDTEKFLFRFCDREGNYVESLLTASKRTD 854

Query: 827  AEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKL 886
             EG V G F F+ +  P+LQ ALE Q + +      + +LAY+RQE++ PL+GI  +  L
Sbjct: 855  TEGTVTGVFFFLHVASPELQYALEMQRISEQATAENLHKLAYLRQEIRKPLDGIALMQNL 914

Query: 887  LESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQ 946
            + SS +S  Q+Q ++ +     Q+  I+   D++ IEE  ME    EF LG++LD V +Q
Sbjct: 915  ISSSDLSIEQKQLIKLNTLSREQLHKIVHDTDIQSIEECYMETNCSEFNLGDVLDVVTNQ 974

Query: 947  VMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLP 1006
             M L +++ + ++ +   ++ +L L GD +RLQ VLS+FL   +      +  V  K  P
Sbjct: 975  TMTLSQEREVKIICESLADVSSLHLYGDNLRLQQVLSEFLTNTLLFT-CKESSVIFKATP 1033

Query: 1007 GLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNG 1066
              + I      VH++ R+THP  GIP+HLI++M++  N  ++ EGLGL +S+KL+ +MNG
Sbjct: 1034 RKERIGKGIHIVHLELRITHPTPGIPAHLIQEMFDDNND-SSKEGLGLYISQKLVKIMNG 1092

Query: 1067 RVRYVRENSKCYFVIDLEL 1085
             V+Y+RE     F+I +E 
Sbjct: 1093 TVQYLREAETSSFIILIEF 1111


>gi|401782502|dbj|BAM36554.1| phytochrome A [Fragaria x ananassa]
          Length = 1124

 Score = 1063 bits (2748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/1106 (49%), Positives = 736/1106 (66%), Gaps = 69/1106 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            +I     DA L A FE+S   G SF+YS SV    E   ++Q       TAYL  IQ+G 
Sbjct: 22   VIAQTTVDAKLHANFEES---GSSFDYSNSVRVSSEVTGDQQPRSDKVTTAYLHHIQKGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA+++ TFR+I YSEN  EML + S +     D  + G IG D RT+FT PS
Sbjct: 79   LIQPFGCLLALDDKTFRVIAYSENAPEMLTMVSHAVPSVGDHPVLG-IGTDVRTIFTGPS 137

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             ++L KA    E+SLLNPILVH  S    KPFYAI+HR+   +VID EP K  +  ++ A
Sbjct: 138  ASALHKALGFGEVSLLNPILVHCKSSG--KPFYAIVHRVTGSLVIDFEPVKPYEVPMTAA 195

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FHDDDHGEVV+E
Sbjct: 196  GALQSYKLAAKAIARLQSLPSGSLERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVVAE 255

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            + ++ LEPYLG+H+P+ DIPQA+RFLF +N+VRMI DC A  V V+Q ++L   L L  S
Sbjct: 256  LTKTGLEPYLGLHYPSTDIPQASRFLFMKNKVRMIVDCCAKNVKVLQDEKLPLDLTLCGS 315

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-------------SMKLWGLVVCHHTSP 374
            TLR+PH CHLQYM NM SIASLVMAV+IN  D               +LWGLVVCH+T+P
Sbjct: 316  TLRAPHSCHLQYMENMNSIASLVMAVVINEGDYEVAGPDSAQTQKRKRLWGLVVCHNTTP 375

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            R++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLCDMLLRDAP  IV+Q+
Sbjct: 376  RFVPFPLRYACEFLAQVFAIHVNKELELEDQMIEKNILRTQTLLCDMLLRDAPLGIVSQT 435

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYP 494
            P+IMDLVKCDGAAL Y  + W +G+TP++ Q++DI+ WL   H D TGLSTDSL +AG+P
Sbjct: 436  PNIMDLVKCDGAALLYKNKIWRLGLTPSDFQIQDISLWLSECHMDSTGLSTDSLYDAGFP 495

Query: 495  GAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKA 554
            GA  LG   CGMA  +ITSKD +FWFRSHTA E++WGGAKH P+ KDNG KMHPRSSFKA
Sbjct: 496  GALALGDVACGMAAVKITSKDIIFWFRSHTAAEIRWGGAKHDPDEKDNGWKMHPRSSFKA 555

Query: 555  FLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEE--NDSKVQGNTQQNGSKMQGVDE 612
            FLEV K RS PW+  E++AIHSLQ+++R++F+++ +   N++ +Q   Q +  K+ GV E
Sbjct: 556  FLEVAKTRSLPWKDYEMDAIHSLQLILRNAFKDVGDMAVNNNGIQ--MQLSDLKIDGVQE 613

Query: 613  LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
            L +V  EMVRLIETA+ PI  VD  G++NGWN K++ELTGLP  +A+GK+L+  +V E S
Sbjct: 614  LEAVTGEMVRLIETASVPILAVDIEGSVNGWNTKISELTGLPVDKAIGKNLL-TLVEESS 672

Query: 673  QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQ 732
               V  ++  AL G+E++N++ +++    +     + ++VNAC SRD   NV GVCFV Q
Sbjct: 673  TSMVGRMLELALQGKEEQNIQFEIKTHGARADFGPISLVVNACASRDIHENVVGVCFVAQ 732

Query: 733  DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV 792
            DIT +K++MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN AM K+TGW R EV
Sbjct: 733  DITGQKIVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMTKLTGWKREEV 792

Query: 793  I---------------------------------GITGQGTENFPFGFFNRQGQFVEVAL 819
            +                                  +TG+ +E  PFGF+NR G++ E  L
Sbjct: 793  MDKMLLGEVFGIHMACCPLKNQEAFVNLGVVINRAMTGEVSEKVPFGFWNRGGKYTECLL 852

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
              S++ D+EG V G FCF+Q+  P+LQ AL  Q L +     + K LAYI+++++NPL+G
Sbjct: 853  CVSKKLDSEGAVTGVFCFLQLASPELQQALHVQRLSEQTAVKRFKALAYIKRQIRNPLSG 912

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNI 939
            I F  K++E + +   Q+Q + TS  C++Q+  I+D  DL  I +G ++L+  EF L  +
Sbjct: 913  ILFSRKMIEGTELGAEQKQLIHTSAQCQQQLSKILDDSDLDSIIDGYLDLEMVEFTLQEV 972

Query: 940  LDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW 999
            L A +SQVM+    K++  + D  EEI   +L GD +RLQ VL+DF+   V + P P G 
Sbjct: 973  LVASISQVMIKSNAKSIRTVQDANEEIMTETLYGDSLRLQQVLADFISVSVNYMP-PGGQ 1031

Query: 1000 VEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRK 1059
            + +        +  +    H++FR++H G G+P  L+  M+ G +   + EG+ L +SRK
Sbjct: 1032 LTLATNLTKDQLGQSVHLAHLEFRISHAGGGVPEELLNQMF-GTDGDISEEGISLLISRK 1090

Query: 1060 LLIMMNGRVRYVRENSKCYFVIDLEL 1085
            L+ +MNG V+Y+RE  K  F+I  EL
Sbjct: 1091 LVKLMNGDVQYLREAGKSTFIISAEL 1116


>gi|39980620|gb|AAR33030.1| phytochrome C [Sorghum bicolor subsp. verticilliflorum]
          Length = 1135

 Score = 1062 bits (2747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/1104 (50%), Positives = 733/1104 (66%), Gaps = 66/1104 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQ 94
            ++     DA L AEFE   +S ++F+YS SV   I P   V    ++ Y   +QRG  IQ
Sbjct: 25   VVAQTPVDAQLHAEFE---SSQRNFDYSSSVSAAIRP--SVSTSTVSTYHQTMQRGLYIQ 79

Query: 95   PFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASL 151
            PFGC+LAV   TF ++ YSEN  EMLDL   +    D      +G D RTLF   S  +L
Sbjct: 80   PFGCLLAVHPDTFTLLAYSENAPEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSSVAL 139

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++
Sbjct: 140  HKAATFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPVDVPVTAAGALK 197

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            S KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV+SE RRS
Sbjct: 198  SYKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVISECRRS 257

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            DLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A  V +IQ   L QPL L  STLR+
Sbjct: 258  DLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATLVKIIQDDSLAQPLSLCGSTLRA 317

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPRYIP 378
             HGCH QYM NMGS+ASLVM+V I++ +               KLWGLVVCHHTSPR++P
Sbjct: 318  SHGCHAQYMANMGSVASLVMSVTISNDEEEDVDTGSDQQPKGRKLWGLVVCHHTSPRFVP 377

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++ 
Sbjct: 378  FPLRYACEFLLQVFGIQLNKEVELAAQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVT 437

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALYY  +  L+G TP+ES++K IA WL  NH   TGLSTDSL EAGYPGAA 
Sbjct: 438  DLVKCDGAALYYQNQLLLLGSTPSESEIKSIATWLQENHDGSTGLSTDSLVEAGYPGAAA 497

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLE 557
            L + VCGMA  +I+SKDF+FWFRSHT KE+KWGGAKH P +  DNG KMHPRSSFKAFLE
Sbjct: 498  LREVVCGMAAIKISSKDFIFWFRSHTTKEIKWGGAKHEPVDADDNGRKMHPRSSFKAFLE 557

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELS 614
            VVK RS PWE  E++AIHSLQ+++R S Q+ E+ N + V+   +    +  K+QG+ EL 
Sbjct: 558  VVKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANRNNVRSIVKAPPDDTKKIQGLLELR 616

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            +V  EMVRLIETATAP+  VD +G INGWN K AELTGLP  EA+G+ LID VV  +S  
Sbjct: 617  TVTNEMVRLIETATAPVLAVDIAGNINGWNNKAAELTGLPVMEAIGRPLIDLVV-VDSIE 675

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V+ ++  AL G E++N+E+KL+ F  Q+ +  + ++VN+C SRD    V GVCFVGQD+
Sbjct: 676  VVKRILDSALQGIEEQNLEIKLKAFHEQECNGPIILMVNSCCSRDLSEKVIGVCFVGQDL 735

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +K++MDK+ R+QGDY AI+++ + LIPPIF  ++   C EWN AM+K+TG  R +VI 
Sbjct: 736  TTQKMIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNKAMQKITGIQREDVID 795

Query: 795  ---------------------------------ITGQGTENFPFGFFNRQGQFVEVALTA 821
                                             I+GQ  E   FGFF+  G+++E  LT 
Sbjct: 796  KLLIGEVFTLHDYGCRVKDHATLTKLSILMNAVISGQDPEKLLFGFFDTDGKYIESLLTV 855

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++R +AEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YI QE++NPLNG++
Sbjct: 856  NKRINAEGKITGAICFLHVASPELQHALQVQKMSEQAATNSFKELTYIHQELRNPLNGMQ 915

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F   LLE S ++E QR+ L ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+
Sbjct: 916  FTCNLLEPSELTEEQRKLLSSNILCQDQLKKILHDTDLESIEQCYMEMNTVEFNLEEALN 975

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
             V+ Q + L ++K + +  D P EI  + L GD +RLQ VL+D+L C ++     +G + 
Sbjct: 976  TVLMQGIPLGKEKRISIERDWPVEISRMYLYGDNLRLQQVLADYLACALQFTQPAEGPIV 1035

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            ++V+P  + I    Q  H++FR+ HP  G+P  LI++M+   N   + EGLGL + +KL+
Sbjct: 1036 LQVIPKKENIGSGMQIAHLEFRIVHPAPGVPEALIQEMFR-HNPEVSREGLGLYICQKLV 1094

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
              M+G V+Y+RE     F+I +E 
Sbjct: 1095 KTMSGTVQYLREADTSSFIILIEF 1118


>gi|224122788|ref|XP_002318913.1| phytochrome [Populus trichocarpa]
 gi|222857289|gb|EEE94836.1| phytochrome [Populus trichocarpa]
          Length = 1126

 Score = 1062 bits (2747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1103 (48%), Positives = 728/1103 (66%), Gaps = 63/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVIS-----PPEGVPEEQITAYLSKIQRGGL 92
            II     DA L A+FE+S +S    +  R   S     PP    ++  T YL  IQ+G L
Sbjct: 22   IIAQTTVDAKLHADFEESGSSFDYSSSVRVTDSVGGDQPPRS--DKVTTTYLHHIQKGKL 79

Query: 93   IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
            IQPFGC+LA++E TF+++ YSEN  E+L + S +     +  + G IG D RT+FT PS 
Sbjct: 80   IQPFGCLLALDEKTFKVVAYSENAPELLTMVSHAVPSVGEHPVLG-IGTDIRTIFTAPSA 138

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            ++L KA    ++SLLNPILVH  +    KPFYAI+HR+   ++ID EP K  +  ++ AG
Sbjct: 139  SALQKAMGFGDVSLLNPILVHCKTSG--KPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAG 196

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR M Y FHDDDHGEVVSE+
Sbjct: 197  ALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRAMAYKFHDDDHGEVVSEV 256

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             +  +EPYLG+H+PA DIPQA+RFLF +N+VRMI DCHA  V V+Q ++L   L L  ST
Sbjct: 257  TKPGMEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGST 316

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPR 375
            LR+PH CHLQYM NM SIASLVMAV++N  D               +LWGLVVCH+TSPR
Sbjct: 317  LRAPHSCHLQYMENMNSIASLVMAVVVNDGDEDGDTPDSVNPQKRKRLWGLVVCHNTSPR 376

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
            ++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLCDML+RDAP  IVTQSP
Sbjct: 377  FVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSP 436

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            +IMDLVKCDGA L+Y  + W +G+TP++ QL+DIA+WL   H D TGLSTDSL +AGYPG
Sbjct: 437  NIMDLVKCDGAVLFYRNKIWRLGITPSDLQLQDIAFWLSEYHMDSTGLSTDSLYDAGYPG 496

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            A  LG  VCGMA  RITSKD LFWFRS TA E++WGGAKH P  KD+G +MHPRSSFKAF
Sbjct: 497  ALALGDVVCGMAAVRITSKDMLFWFRSQTAAEIRWGGAKHEPGEKDDGRRMHPRSSFKAF 556

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK RS PW+  E++AIHSLQ+++R++F+++E  +      + + +  K++G+ EL +
Sbjct: 557  LEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDIETMDVDTKTIHARLSDLKIEGMQELEA 616

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETAT PI  VD  G +NGWN K++ELTGL   +A+GK L+  +V + S   
Sbjct: 617  VTSEMVRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAIGKHLL-TLVEDSSVDI 675

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+ ++  AL G+E++N++ +++    + +   + ++VNAC SRD   NV GVCFVGQDIT
Sbjct: 676  VKRMLFLALQGKEEQNIQFEIKTHGSKSECGPICLVVNACASRDLHENVVGVCFVGQDIT 735

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
             +K++MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN AM  +TGW R EV+  
Sbjct: 736  GQKMVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCSEWNPAMTNLTGWKREEVLDK 795

Query: 794  -------------------------------GITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            +TGQ +E   FGFF R G++VE  L  S
Sbjct: 796  MLLGEVFGLNMACCRLKNQEAFVNLGVVLNTAMTGQESEKVSFGFFARTGKYVECLLCVS 855

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            ++ D EG V G FCF+Q+   +LQ AL  Q L +     ++K LAY+++++ NPL+GI F
Sbjct: 856  KKLDREGAVTGVFCFLQLASQELQQALHVQRLSEQTALKRLKALAYLKRQIWNPLSGIIF 915

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              K++E + +   Q++ L TS  C+ Q+  I+D  DL  I EG ++L+  EF L  +L A
Sbjct: 916  SGKMMEGTELGAEQKELLHTSAQCQCQLSKILDDSDLDSIIEGYLDLEMVEFTLREVLVA 975

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
              SQVM+   +K + +++D  EE  A +L GD IRLQ VL+DFL   V   PS  G + +
Sbjct: 976  ATSQVMMKSNEKGIRIINDAAEETMAETLYGDSIRLQQVLADFLQMSVNFTPS-GGLLSV 1034

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
                    +  +   VH++ R+ HPG GIP  L++ M+ G +   + EG+ L +SRKL+ 
Sbjct: 1035 SASLTKDQLGQSVYLVHLELRIRHPGAGIPEALLDQMF-GEDTDASVEGISLVISRKLVK 1093

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
            +MNG VRY+RE  K  F+I +EL
Sbjct: 1094 LMNGDVRYMREAGKSSFIISVEL 1116


>gi|255543066|ref|XP_002512596.1| phytochrome A, putative [Ricinus communis]
 gi|223548557|gb|EEF50048.1| phytochrome A, putative [Ricinus communis]
          Length = 1124

 Score = 1062 bits (2747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/1114 (49%), Positives = 730/1114 (65%), Gaps = 74/1114 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPPEGV-----PEEQITAYLSKIQRGG 91
            II     DA L A+FE+S   G SF+YS SV ++   G+      ++  TAYL  IQ+G 
Sbjct: 22   IISQTAVDAKLHADFEES---GSSFDYSNSVHVTSSTGLDHAPRSDKVTTAYLHHIQKGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA++E T+++I YSEN  EML + S +     D  + G IG D RT+FT PS
Sbjct: 79   LIQPFGCLLALDEKTYKVIAYSENAPEMLTMVSHAVPSVGDHPVLG-IGTDIRTIFTAPS 137

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             ++L KA    ++SLLNPILVH  +    KPFYAI+HR+    +ID EP K  +  ++ A
Sbjct: 138  ASALQKALGFGDVSLLNPILVHCKTSG--KPFYAIVHRVTGSFIIDFEPVKPYEVPMTAA 195

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AISRLQ+LP G +  LCDT+V++V +LTGYDRVM Y FHDDDHGEV+SE
Sbjct: 196  GALQSYKLAAKAISRLQSLPSGSMERLCDTMVQEVFELTGYDRVMTYKFHDDDHGEVISE 255

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            + +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC A  V V+Q ++L   L L  S
Sbjct: 256  VTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVLQDEKLPLELTLCGS 315

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSP 374
            TLR+PH CHLQYM NM S+ASLVMAV++N  D               +LWGLVVCH+T+P
Sbjct: 316  TLRAPHSCHLQYMENMDSVASLVMAVVVNEGDEDDDSPTSVQPQKRKRLWGLVVCHNTTP 375

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
            R++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLCDMLLRDAP  I+TQS
Sbjct: 376  RFVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDMLLRDAPLGILTQS 435

Query: 435  PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYP 494
            P+I DLVKCDGAAL Y  + W +GVTP++ Q++DIA WL   H D TGLSTDSL +AGY 
Sbjct: 436  PNITDLVKCDGAALLYKNKIWRLGVTPSDLQIRDIAVWLSEYHMDSTGLSTDSLYDAGYS 495

Query: 495  GAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKA 554
             A  L   VCGMA  RITSKD LFWFR+ TA E++WGGAKH P  KD+G KMHPRSSFKA
Sbjct: 496  AALSLEDVVCGMAAVRITSKDMLFWFRAPTAAEIRWGGAKHEPGEKDDGRKMHPRSSFKA 555

Query: 555  FLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELS 614
            FLEVVK RS PW+  E++AIHSLQ+++R++F++ E  +      +++ +  K++G+ EL 
Sbjct: 556  FLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDAETMDADAKAIHSRLSDLKIEGMQELE 615

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            +V  EMVRLIETAT PI  VD  G +NGWN K+AELTGLP  +A+GK L+  +V + S  
Sbjct: 616  AVTSEMVRLIETATVPILAVDVDGLVNGWNTKIAELTGLPVDKAIGKHLL-TLVEDGSID 674

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V+N++  AL G+E++N++ +++    + +   + ++VNAC SRD   NV GVCFV QDI
Sbjct: 675  LVKNMLFSALQGKEEQNIQFEIKTHGSKVESGPISLVVNACASRDISENVVGVCFVAQDI 734

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI- 793
            T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN AM K+TGW R EV+ 
Sbjct: 735  TGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNPAMAKLTGWKREEVMD 794

Query: 794  --------------------------------GITGQGTENFPFGFFNRQGQFVEVALTA 821
                                             +T Q  E   F FF R  ++VE  L  
Sbjct: 795  KMLLGEVFGINRACCCLKNQEAFVNLGVLINNAMTSQVPEKVSFSFFARNKKYVECLLCV 854

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            S++ D EG V G FCF+Q+   +LQ AL  Q L +     ++K LAYI+++++NPL+GI 
Sbjct: 855  SKKLDREGAVTGVFCFLQLASQELQQALHIQRLSEQTALKRLKTLAYIKRQIQNPLSGIM 914

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F  KL+E + +   Q+Q L TS  C+RQ+  I+D  D+  I EG ++L+  EF L  +L 
Sbjct: 915  FSRKLMEITELDAEQKQLLHTSAQCQRQLSKILDDSDIDSIVEGYLDLEMVEFTLHEVLI 974

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
            A +SQV +  + K + +++D  E I   +L GD IRLQ VL+DFL   V   P P G + 
Sbjct: 975  AAISQVTIKSKGKGIRIVNDAAEVIMTETLYGDSIRLQQVLADFLAASVDFTP-PGGQLT 1033

Query: 1002 IKVLPGLKLIKD----ADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLS 1057
            I      K  KD    +   VH++ R+TH G GIP  L+  M+ G +   + EG+ L +S
Sbjct: 1034 IAA----KFTKDQLGQSVHLVHLELRITHAGGGIPEPLLNQMF-GSDGDVSDEGVSLFIS 1088

Query: 1058 RKLLIMMNGRVRYVRENSKCYFVIDLELKTRGRQ 1091
            RKL+ +MNG V+Y+RE  K  F++ +EL   GR+
Sbjct: 1089 RKLVKLMNGDVQYLREAGKSSFIVTVELAA-GRK 1121


>gi|39980606|gb|AAR33023.1| phytochrome C [Sorghum bicolor subsp. verticilliflorum]
 gi|39980608|gb|AAR33024.1| phytochrome C [Sorghum bicolor subsp. verticilliflorum]
 gi|39980610|gb|AAR33025.1| phytochrome C [Sorghum bicolor subsp. verticilliflorum]
          Length = 1135

 Score = 1061 bits (2745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1104 (50%), Positives = 733/1104 (66%), Gaps = 66/1104 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQ 94
            ++     DA L AEFE   +S ++F+YS SV   I P   V    ++ Y   +QRG  IQ
Sbjct: 25   VVAQTPVDAQLHAEFE---SSQRNFDYSSSVSAAIRP--SVSTSTVSTYHQTMQRGLYIQ 79

Query: 95   PFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASL 151
            PFGC+LAV   TF ++ YSEN  EMLDL   +    D      +G D RTLF   S  +L
Sbjct: 80   PFGCLLAVHPDTFTLLAYSENAPEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSSVAL 139

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++
Sbjct: 140  HKAATFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPVDVPVTAAGALK 197

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            S KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV+SE RRS
Sbjct: 198  SYKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVISECRRS 257

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            DLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A  V +IQ   L QPL L  STLR+
Sbjct: 258  DLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATLVKIIQDDSLAQPLSLCGSTLRA 317

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPRYIP 378
             HGCH QYM NMGS+ASLVM+V I++ +               KLWGLV+CHHTSPR++P
Sbjct: 318  SHGCHAQYMANMGSVASLVMSVTISNDEEEDVDTGSDQQPKGRKLWGLVICHHTSPRFVP 377

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLLRDAP  I TQSP++ 
Sbjct: 378  FPLRYACEFLLQVFGIQLNKEVELAAQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVT 437

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALYY  +  L+G TP+ES++K IA WL  NH   TGLSTDSL EAGYPGAA 
Sbjct: 438  DLVKCDGAALYYQNQLLLLGSTPSESEIKSIATWLQENHDGSTGLSTDSLVEAGYPGAAA 497

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLE 557
            L + VCGMA  +I+SKDF+FWFRSHT KE+KWGGAKH P +  DNG KMHPRSSFKAFLE
Sbjct: 498  LREVVCGMAAIKISSKDFIFWFRSHTTKEIKWGGAKHEPVDADDNGRKMHPRSSFKAFLE 557

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELS 614
            VVK RS PWE  E++AIHSLQ+++R S Q+ E+ N + V+   +    +  K+QG+ EL 
Sbjct: 558  VVKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANRNNVRSIVKAPPDDTKKIQGLLELR 616

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            +V  EMVRLIETATAP+  VD +G INGWN K AELTGLP  EA+G+ LID VV  +S  
Sbjct: 617  TVTNEMVRLIETATAPVLAVDIAGNINGWNNKAAELTGLPVMEAIGRPLIDLVV-VDSIE 675

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V+ ++  AL G E++N+E+KL+ F  Q+ +  + ++VN+C SRD    V GVCFVGQD+
Sbjct: 676  VVKRILDSALQGIEEQNLEIKLKAFHEQECNGPIILMVNSCCSRDLSEKVIGVCFVGQDL 735

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +K++MDK+ R+QGDY AI+++ + LIPPIF  ++   C EWN AM+K+TG  R +VI 
Sbjct: 736  TTQKMIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNKAMQKITGIQREDVID 795

Query: 795  ---------------------------------ITGQGTENFPFGFFNRQGQFVEVALTA 821
                                             I+GQ  E   FGFF+  G+++E  LT 
Sbjct: 796  KLLIGEVFTLHDYGCRVKDHATLTKLSILMNAVISGQDPEKLLFGFFDTDGKYIESLLTV 855

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++R +AEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YI QE++NPLNG++
Sbjct: 856  NKRINAEGKITGAICFLHVASPELQHALQVQKMSEQAATNSFKELTYIHQELRNPLNGMQ 915

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F   LLE S ++E QR+ L ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+
Sbjct: 916  FTCNLLEPSELTEEQRKLLSSNILCQDQLKKILHDTDLESIEQCYMEMNTVEFNLEEALN 975

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
             V+ Q + L ++K + +  D P EI  + L GD +RLQ VL+D+L C ++     +G + 
Sbjct: 976  TVLMQGIPLGKEKRISIERDWPVEISRMYLYGDNLRLQQVLADYLACALQFTQPAEGPIV 1035

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            ++V+P  + I    Q  H++FR+ HP  G+P  LI++M+   N   + EGLGL + +KL+
Sbjct: 1036 LQVIPKKENIGSGMQIAHLEFRIVHPAPGVPEALIQEMFR-HNPEVSREGLGLYICQKLV 1094

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
              M+G V+Y+RE     F+I +E 
Sbjct: 1095 KTMSGTVQYLREADTSSFIILIEF 1118


>gi|39980624|gb|AAR33032.1| phytochrome C [Sorghum propinquum]
          Length = 1135

 Score = 1061 bits (2744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1104 (50%), Positives = 732/1104 (66%), Gaps = 66/1104 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQ 94
            ++     DA L AEFE   +S ++F+YS SV   I P   V    ++ Y   +QRG  IQ
Sbjct: 25   VVAQTPVDAQLHAEFE---SSQRNFDYSSSVSAAIRP--SVSTSTVSTYHQTMQRGLYIQ 79

Query: 95   PFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASL 151
            PFGC+LAV   TF ++ YSEN  EMLDL   +    D      +G D RTLF   S  +L
Sbjct: 80   PFGCLLAVHPDTFTLLAYSENAPEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSSVAL 139

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++
Sbjct: 140  HKAATFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPVDVPVTAAGALK 197

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            S KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV+SE RRS
Sbjct: 198  SYKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVISECRRS 257

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            DLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A  V +IQ   L QPL L  STLR+
Sbjct: 258  DLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATLVKIIQDDSLAQPLSLCGSTLRA 317

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPRYIP 378
             HGCH QYM NMGS+ASLVM+V I++ +               KLWGLVVCHHTSPR++P
Sbjct: 318  SHGCHAQYMANMGSVASLVMSVTISNDEEEDGDPGSDQQPKGRKLWGLVVCHHTSPRFVP 377

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+Q F +QL  E+++  Q  E++ILRTQ LLCDMLLRDAP  I TQSP++M
Sbjct: 378  FPLRYACEFLLQVFGIQLNKEVELVAQAKERHILRTQTLLCDMLLRDAPVGIFTQSPNVM 437

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALYY  +  L+G TP+ES++K IA WL  NH   TGLSTDSL EAGYPGAA 
Sbjct: 438  DLVKCDGAALYYQNQLLLLGSTPSESEIKSIATWLQENHDGSTGLSTDSLVEAGYPGAAA 497

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLE 557
            L + VCGMA  +I+SKDF+FWFRSHT KE+KWGGAKH P +  DNG KMHPRSSFKAFLE
Sbjct: 498  LREVVCGMAAIKISSKDFIFWFRSHTTKEIKWGGAKHEPVDADDNGRKMHPRSSFKAFLE 557

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELS 614
            VVK RS PWE  E++AIHSLQ+++R S Q+ E+ N + V+   +    +  K+QG+ EL 
Sbjct: 558  VVKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANRNNVRSIVKAPLDDTKKIQGLLELR 616

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            +V  EMVRLIETATAP+  VD +G INGWN K AELTGLP  EA+G+ L+D VV  +S  
Sbjct: 617  TVTNEMVRLIETATAPVLAVDIAGNINGWNNKAAELTGLPVMEAIGRPLVDLVV-VDSIE 675

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V+ ++  AL G E++N+E+KL+ F  Q+ +  + ++VN+C SRD    V GVCFVGQD+
Sbjct: 676  VVKRILDSALQGIEEQNLEIKLKAFHEQECNGPIILMVNSCCSRDLSEKVIGVCFVGQDL 735

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +K++MDK+ R+QGDY AI+++ + LIPPIF   +   C EWN AM+K+TG  R +VI 
Sbjct: 736  TTQKMIMDKYTRIQGDYVAIVKNPSELIPPIFMISDLGSCLEWNKAMQKITGIQREDVID 795

Query: 795  ---------------------------------ITGQGTENFPFGFFNRQGQFVEVALTA 821
                                             I+GQ  E   FGFF+  G+++E  LT 
Sbjct: 796  KLLIGEVFTLHDYGCRVKDHATLTKLSILMNAVISGQDPEKLLFGFFDTDGKYIESLLTV 855

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++R +AEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YI QE++NPLNG++
Sbjct: 856  NKRINAEGKITGAICFLHVASPELQHALQVQKMSEQAATNSFKELTYIHQELRNPLNGMQ 915

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F   LLE S ++E QR+ L ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+
Sbjct: 916  FTCNLLEPSELTEEQRKLLSSNILCQDQLKKILHDTDLESIEQCYMEMNTVEFNLEEALN 975

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
             V+ Q + L ++K + +  D P EI  + L GD +RLQ VL+D+L C ++     +G + 
Sbjct: 976  TVLMQGIPLGKEKRISIERDWPVEISRMYLYGDNLRLQQVLADYLACALQFTQPAEGPIV 1035

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            ++V+P  + I    Q  H++FR+ HP  G+P  LI++M+   N   + EGLGL + +KL+
Sbjct: 1036 LQVIPKKENIGSGMQIAHLEFRIVHPAPGVPEALIQEMFR-HNPEVSREGLGLYICQKLV 1094

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
              M+G V+Y+RE     F+I +E 
Sbjct: 1095 KTMSGTVQYLREADTSSFIILIEF 1118


>gi|449506938|ref|XP_004162889.1| PREDICTED: LOW QUALITY PROTEIN: phytochrome C-like [Cucumis sativus]
          Length = 1119

 Score = 1060 bits (2742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/1099 (49%), Positives = 723/1099 (65%), Gaps = 57/1099 (5%)

Query: 35   GKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV----ISPPEGVPEEQITAYLSKIQRG 90
            G  ++     DA L  +FE    S + F+YS SV          V    + +YL  IQRG
Sbjct: 22   GAHVVAQTPIDAKLHVDFE---GSERLFDYSASVDFNAACSTSNVHASTVQSYLLNIQRG 78

Query: 91   GLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGLI--GIDARTLFTPPS 147
             L+QPFGCM+AV+     ++ YSEN  EMLDL   +  + E    +  G D RTLF  P 
Sbjct: 79   SLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPG 138

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             A+L KAA  +E++LLNPILVH   R+  KPFYAILHR+DVG++IDLEP    D  ++ A
Sbjct: 139  AAALQKAADFKEVNLLNPILVHC--RTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAA 196

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA++S KLA  AIS+LQ L  G+I LLC+ +V++V  LTGYDRVM+Y FHDD+HGEVV+E
Sbjct: 197  GALKSYKLAAKAISKLQNLQSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAE 256

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
              RSDLEPY G+H+PA DIPQA+RFLF +N+VRMICDC A PV V+Q + L QPL L  S
Sbjct: 257  CCRSDLEPYFGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLAQPLSLCGS 316

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------MKLWGLVVCHHTSPRYIP 378
             LR+PHGCH +YM NMGSIASLVM++ IN  DS          KLWGLVVCHHTSPR++P
Sbjct: 317  ALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKDRKLWGLVVCHHTSPRFVP 376

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+Q F +Q+  E+++  QL EK+ILR Q +LCDMLLRDAP  IVTQSP+IM
Sbjct: 377  FPLRYACEFLIQVFGIQINKEVELQAQLKEKHILRIQTVLCDMLLRDAPVGIVTQSPNIM 436

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALY+  + W +GVTPTE+Q+++IA WLL +H   TGLSTDSL EAG+ GA+ 
Sbjct: 437  DLVKCDGAALYFRKKFWSLGVTPTEAQIRNIADWLLKDHSGSTGLSTDSLTEAGFYGASA 496

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
            LG  +CGMA  RITSKDFLFWFRSH AKE++WGGAKH P  +D+G KMHPRSSFKAFLEV
Sbjct: 497  LGDEICGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPSDEDDGRKMHPRSSFKAFLEV 556

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
            VK RS PWE  E++AIHSLQ+++R S Q+ E E + KV         K Q +DEL  +  
Sbjct: 557  VKRRSQPWEDVEMDAIHSLQLILRGSLQD-EIEEECKVITTVPPVDEKTQQLDELRVITN 615

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETA  PI  VD  G INGWN+K  ELTGL   EA+G  L+D VV+ +S   V+ 
Sbjct: 616  EMVRLIETAAVPILAVDVFGKINGWNSKATELTGLAIQEAIGMPLVDCVVN-DSVKVVKK 674

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            ++  A+ G E+KNVE+KL+ F    Q+  V + VN+C SRD  NNV G+ F+GQD+T +K
Sbjct: 675  MLSLAIQGIEEKNVEIKLKTFGTAVQNGPVILEVNSCCSRDLNNNVVGIXFIGQDVTKQK 734

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794
            ++M+++ ++QGDY  I+++ + LIPP F +D    C EWN AMEK++G+ R E+      
Sbjct: 735  LVMNQYTQIQGDYTGIMRNPSALIPPXFMADGEGRCLEWNDAMEKLSGFRRVEMTNRMLL 794

Query: 795  ----------------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTD 826
                                        I+GQ TE F F F +R+G +VE  LTAS+RTD
Sbjct: 795  GEVFTLENFGCRVKDHTLTKLRIILHRVISGQDTEKFLFRFCDREGNYVESLLTASKRTD 854

Query: 827  AEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKL 886
             EG V G F F+ +  P+LQ ALE Q + +      + +LAY+RQE++ PL+GI  +  L
Sbjct: 855  TEGTVTGVFFFLHVASPELQYALEMQRISEQATAENLHKLAYLRQEIRKPLDGIALMQNL 914

Query: 887  LESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQ 946
            + SS +S  Q+Q ++ +     Q+  I+   D++ IEE  ME    EF LG++LD V +Q
Sbjct: 915  ISSSDLSIEQKQLIKLNTLSREQLHKIVHDTDIQSIEECYMETNCSEFNLGDVLDVVTNQ 974

Query: 947  VMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLP 1006
             M L +++ + ++ +   ++ +L L GD +RLQ VLS+FL   +      +  V  K  P
Sbjct: 975  TMTLSQEREVKIICESLADVSSLHLYGDNLRLQQVLSEFLTNTLLFT-CKESSVIFKATP 1033

Query: 1007 GLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNG 1066
              + I      VH++ R+THP  GIP+HLI++M++  N  ++ EGLGL +S+KL+ +MNG
Sbjct: 1034 RKERIGKGIHIVHLELRITHPTPGIPAHLIQEMFDDNND-SSKEGLGLYISQKLVKIMNG 1092

Query: 1067 RVRYVRENSKCYFVIDLEL 1085
             V+Y+RE     F+I +E 
Sbjct: 1093 TVQYLREAETSSFIILIEF 1111


>gi|130188|sp|P15001.1|PHYA_PEA RecName: Full=Phytochrome A
 gi|169132|gb|AAA33682.1| phytochrome [Pisum sativum]
 gi|295830|emb|CAA32242.1| phytochrome apoprotein [Pisum sativum]
 gi|51173514|gb|AAT97643.1| phytochrome A apoprotein [Pisum sativum]
 gi|226757|prf||1604466A phytochrome
          Length = 1124

 Score = 1060 bits (2742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/1128 (48%), Positives = 737/1128 (65%), Gaps = 60/1128 (5%)

Query: 18   NTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVI---SPPEG 74
             T P +SS+   +  N  + II     DA L A FE+S +S    +  R         + 
Sbjct: 3    TTRPSQSSNNSGRSRNSAR-IIAQTTVDAKLHATFEESGSSFDYSSSVRVSGSVDGDQQP 61

Query: 75   VPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFE 130
               +  TAYL+ IQRG  IQPFGC+LA++E T +++ YSEN  EML + S +     D  
Sbjct: 62   RSNKVTTAYLNHIQRGKQIQPFGCLLALDEKTCKVVAYSENAPEMLTMVSHAVPSVGDHP 121

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
              G IG D RT+FT PS ++L KA    E+SLLNPILVH  +    KPFYAI+HR+   +
Sbjct: 122  ALG-IGTDIRTVFTAPSASALQKALGFAEVSLLNPILVHCKTSG--KPFYAIIHRVTGSL 178

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            +ID EP K  +  ++ AGA+QS KLA  AI+RLQ+L  G +  LCDT+V++V +LTGYDR
Sbjct: 179  IIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLASGSMERLCDTMVQEVFELTGYDR 238

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+DDHGEV++EI +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V
Sbjct: 239  VMAYKFHEDDHGEVIAEIAKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHV 298

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------- 359
             V+Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N  D           
Sbjct: 299  KVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLP 358

Query: 360  --SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVL 417
                +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ L
Sbjct: 359  QKKKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQILEKNILRTQTL 418

Query: 418  LCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNH 477
            LCDML+RDAP  IV+QSP+IMDLVKCDGAAL+Y  + WL+G TPTESQL++IA W+   H
Sbjct: 419  LCDMLMRDAPLGIVSQSPNIMDLVKCDGAALFYRNKLWLLGATPTESQLREIALWMSEYH 478

Query: 478  GDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP 537
             D TGLSTDSL++AG+PGA  L   VCGMA  RITSKD +FWFRSHTA E++WGGAKH P
Sbjct: 479  TDSTGLSTDSLSDAGFPGALSLSDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEP 538

Query: 538  EHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQ 597
              +D+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++ ++ +  + +   
Sbjct: 539  GDQDDGRKMHPRSSFKAFLEVVKARSVPWKDFEMDAIHSLQLILRNASKDTDIIDLNTKA 598

Query: 598  GNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASE 657
             NT+ N  K++G+ EL +V  EMVRLIETAT PI  VD  GT+NGWN K+AELTGLP  E
Sbjct: 599  INTRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGTVNGWNIKIAELTGLPVGE 658

Query: 658  AMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTS 717
            A+GK L+  +V + S   V+ ++  AL GEE+KNV+ +++    Q +   + ++VNAC S
Sbjct: 659  AIGKHLL-TLVEDSSTDIVKKMLNLALQGEEEKNVQFEIKTHGDQVESGPISLIVNACAS 717

Query: 718  RDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEW 777
            +D + NV GVCFV QDIT +K +MDKF R++GDY+AI+Q+ N LIPPIF +DE   C EW
Sbjct: 718  KDLRENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEW 777

Query: 778  NAAMEKVTGWMRHEVI---------------------------------GITGQGTENFP 804
            NAAM K+TGW R EV+                                  +TG  TE  P
Sbjct: 778  NAAMIKLTGWKREEVMDKMLLGEVFGTQMSCCRLKNQEAFVNFGIVLNKAMTGLETEKVP 837

Query: 805  FGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIK 864
            FGFF+R+G++VE  L+ S++ DAEG V G FCF+Q+  P+LQ AL  Q L +     ++K
Sbjct: 838  FGFFSRKGKYVECLLSVSKKIDAEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLK 897

Query: 865  ELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEE 924
             L Y++++++NPL GI F  K+LE + +   Q++ + TS  C+RQ+  I+D  DL  I +
Sbjct: 898  VLTYMKRQIRNPLAGIVFSSKMLEGTDLETEQKRIVNTSSQCQRQLSKILDDSDLDGIID 957

Query: 925  GNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSD 984
            G ++L+  EF L  +L   +SQVM     K + + +D+ E I   +L GD +RLQ VL+D
Sbjct: 958  GYLDLEMAEFTLHEVLVTSLSQVMNRSNTKGIRIANDVAEHIARETLYGDSLRLQQVLAD 1017

Query: 985  FLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRN 1044
            FL   +   P+  G V I      + +  +   V+++  +TH G G+P   +  M+ G N
Sbjct: 1018 FLLISINSTPN-GGQVVIAASLTKEQLGKSVHLVNLELSITHGGSGVPEAALNQMF-GNN 1075

Query: 1045 QWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRGRQK 1092
               + EG+ L +SRKLL +MNG VRY++E  K  F++ +EL    + K
Sbjct: 1076 VLESEEGISLHISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAHKLK 1123


>gi|39980592|gb|AAR33016.1| phytochrome C [Sorghum bicolor]
 gi|39980594|gb|AAR33017.1| phytochrome C [Sorghum bicolor]
          Length = 1135

 Score = 1060 bits (2740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/1104 (50%), Positives = 733/1104 (66%), Gaps = 66/1104 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQ 94
            ++     DA L AEFE   +S ++F+YS SV   I P   V    ++ Y   +QRG  IQ
Sbjct: 25   VVAQTPVDAQLHAEFE---SSQRNFDYSSSVSAAIRP--SVSTSTVSTYHQTMQRGLYIQ 79

Query: 95   PFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASL 151
            PFGC+LAV   TF ++ YSEN  EMLDL   +    D      +G D RTLF   S  +L
Sbjct: 80   PFGCLLAVHPDTFTLLAYSENAPEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSSVAL 139

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++
Sbjct: 140  HKAATFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPVDVPVTAAGALK 197

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            S KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV+SE RRS
Sbjct: 198  SYKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVISECRRS 257

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            DLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A  V +IQ   L QPL L  STLR+
Sbjct: 258  DLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATLVKIIQDDSLAQPLSLCGSTLRA 317

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPRYIP 378
             HGCH QYM NMGS+ASLVM+V I++ +               KLWGLVVCHHTSPR++P
Sbjct: 318  SHGCHAQYMANMGSVASLVMSVTISNDEEEDVDTGSDQQPKGRKLWGLVVCHHTSPRFVP 377

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LL DMLLRDAP  I TQSP++M
Sbjct: 378  FPLRYACEFLLQVFGIQLNKEVELAAQAKERHILRTQTLLWDMLLRDAPVGIFTQSPNVM 437

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAALYY  +  L+G TP+ES++K IA WL  NH   TGLSTDSL EAGYPGAA 
Sbjct: 438  DLVKCDGAALYYQNQLLLLGSTPSESEIKSIATWLQENHDGSTGLSTDSLVEAGYPGAAA 497

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLE 557
            L + VCGMA  +I+SKDF+FWFRSHT KE+KWGGAKH P +  DNG KMHPRSSFKAFLE
Sbjct: 498  LREVVCGMAAIKISSKDFIFWFRSHTTKEIKWGGAKHEPVDADDNGRKMHPRSSFKAFLE 557

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELS 614
            VVK RS PWE  E++AIHSLQ+++R S Q+ E+ N + V+   +    +  K+QG+ EL 
Sbjct: 558  VVKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANRNNVRSIVKAPPDDTKKIQGLLELR 616

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            +V  EMVRLIETATAP+  VD +G INGWN K AELTGLP  EA+G+ LID VV  +S  
Sbjct: 617  TVTNEMVRLIETATAPVLAVDIAGNINGWNNKAAELTGLPVMEAIGRPLIDLVV-VDSIE 675

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V+ ++  AL G E++N+E+KL+ F  Q+ +  + ++VN+C SRD    V GVCFVGQD+
Sbjct: 676  VVKRILDSALQGIEEQNLEIKLKAFHEQECNGPIILMVNSCCSRDLSEKVIGVCFVGQDL 735

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +K++MDK+ R+QGDY AI+++ + LIPPIF  ++   C EWN AM+K+TG  R +VI 
Sbjct: 736  TTQKMIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNKAMQKITGIQREDVID 795

Query: 795  ---------------------------------ITGQGTENFPFGFFNRQGQFVEVALTA 821
                                             I+GQ  E   FGFF+  G+++E  LT 
Sbjct: 796  KLLIGEVFTLHDYGCRVKDHATLTKLSILMNAVISGQDPEKLLFGFFDTDGKYIESLLTV 855

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++R +AEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YI QE++NPLNG++
Sbjct: 856  NKRINAEGKITGAICFLHVASPELQHALQVQKMSEQAATNSFKELTYIHQELRNPLNGMQ 915

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F   LLE S ++E QR+ L ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+
Sbjct: 916  FTCNLLEPSELTEEQRKLLSSNILCQDQLKKILHDTDLESIEQCYMEMNTVEFNLEEALN 975

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
             V+ Q + L ++K + +  D P EI  + L GD +RLQ VL+D+L C ++     +G + 
Sbjct: 976  TVLMQGIPLGKEKRISIERDWPVEISRMYLYGDNLRLQQVLADYLACALQFTQPAEGPIV 1035

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            ++V+P  + I    Q  H++FR+ HP  G+P  LI++M+   N   + EGLGL + +KL+
Sbjct: 1036 LQVIPKKENIGSGMQIAHLEFRIVHPAPGVPEALIQEMFR-HNPEVSREGLGLYICQKLV 1094

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
              M+G V+Y+RE     F+I +E 
Sbjct: 1095 KTMSGTVQYLREADTSSFIILIEF 1118


>gi|340007753|gb|AEK26583.1| phytochrome A [Populus tremula]
          Length = 1109

 Score = 1059 bits (2738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1094 (49%), Positives = 724/1094 (66%), Gaps = 63/1094 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVIS-----PPEGVPEEQITAYLSKIQRGGL 92
            II     DA L A+FE+S +S    +  R   S     PP    ++  TAYL  IQ+G L
Sbjct: 22   IIAQTTVDAKLHADFEESGSSFDYSSSVRVTDSVGGDQPPRS--DKVTTAYLHHIQKGKL 79

Query: 93   IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
            IQPFGC+LA++E TFR++ YSEN  E+L + S +     +  + G IG D RT+FT PS 
Sbjct: 80   IQPFGCLLALDEKTFRVVAYSENAPELLTMVSHAVPSVGEHPVLG-IGTDIRTIFTAPSA 138

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            ++L KA    ++SLLNPILVH  +    KPFYAI+HR+   ++ID EP K  +  ++ AG
Sbjct: 139  SALQKAMGFGDVSLLNPILVHCKTSG--KPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAG 196

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR M Y FHDDDHGEVVSE+
Sbjct: 197  ALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRAMAYKFHDDDHGEVVSEV 256

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             +  +EPYLG+H+PA DIPQA+RFLF +N+VRMI DCHA  V V+Q ++L   L L  ST
Sbjct: 257  TKPGMEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGST 316

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPR 375
            LR+PH CHLQYM NM SIASLVMAV++N  D               +LWGLVVCH+TSPR
Sbjct: 317  LRAPHSCHLQYMENMNSIASLVMAVVVNDGDEDGDTPDSANPQKRKRLWGLVVCHNTSPR 376

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
            ++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLCDML+RDAP  IVTQSP
Sbjct: 377  FVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSP 436

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            +IMDLVKCDGA L+Y  + W +G+TP++ QL+DIA+WL   H D TGLSTDSL +AGYPG
Sbjct: 437  NIMDLVKCDGAVLFYRNKIWRLGITPSDLQLQDIAFWLSEYHMDSTGLSTDSLYDAGYPG 496

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            A  LG  VCGMA  RITSKD LFWFRS TA E++WGGAKH P  KD+G +MHPRSSFKAF
Sbjct: 497  ALALGDVVCGMAAVRITSKDMLFWFRSQTAAEIRWGGAKHEPGEKDDGRRMHPRSSFKAF 556

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK RS PW+  E++AIHSLQ+++R++F+++E  +      + + +  K++G+ EL +
Sbjct: 557  LEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDIETMDVDTKTIHARLSDLKIEGMQELEA 616

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETAT PI  VD  G +NGWN K++ELTGL   +A+GK L+  +V + S   
Sbjct: 617  VTSEMVRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAIGKHLL-TLVEDSSVDI 675

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+ ++  AL G+E++N++ +++    + +   + ++VNAC SRD   NV GVCFVGQDIT
Sbjct: 676  VKRMLFLALQGKEEQNIQFEIKTHGSKSECGPICLVVNACASRDLHENVVGVCFVGQDIT 735

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
             +K++MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN AM  +TGW R EV+  
Sbjct: 736  GQKMVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCSEWNPAMTNLTGWKREEVLDK 795

Query: 794  -------------------------------GITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            +TGQ +E   FGFF R G++VE  L  S
Sbjct: 796  MLLGEVFGLNMACCRLKNQEAFVNLGVVLNTAMTGQESEKVSFGFFARTGKYVECLLCVS 855

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            ++ D EG V G FCF+Q+   +LQ AL  Q L +     ++K LAY+++++ NPL+GI F
Sbjct: 856  KKLDREGAVTGVFCFLQLASQELQQALHVQRLSEQTALKRLKALAYLKKQIWNPLSGIIF 915

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              K++E + +   Q++ L TS  C+ Q+  I+D  DL  I EG ++L+  EF L  +L A
Sbjct: 916  SGKMMEGTELGAEQKELLHTSAQCQCQLSKILDDSDLDSIIEGYLDLEMVEFTLREVLVA 975

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
              SQVM+   +K + +++D  EE+ A +L GD IRLQ VL+DFL   V   PS  G + +
Sbjct: 976  ATSQVMMKSNEKGIRIINDAAEEMMAETLYGDSIRLQQVLADFLLMSVNFTPS-GGLLTV 1034

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
                    +  +   VH++ R+ HPG GIP  L++ MY G +   + EG+ L +SRKL+ 
Sbjct: 1035 SASFSKDQLGQSVYLVHLELRIRHPGAGIPEALLDQMY-GEDTGASVEGISLVISRKLVK 1093

Query: 1063 MMNGRVRYVRENSK 1076
            +MNG VRY+RE  K
Sbjct: 1094 LMNGDVRYMREAGK 1107


>gi|11134032|sp|P93528.1|PHYC_SORBI RecName: Full=Phytochrome C
 gi|1800219|gb|AAB41399.1| phytochrome C [Sorghum bicolor]
          Length = 1135

 Score = 1058 bits (2735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/1104 (50%), Positives = 732/1104 (66%), Gaps = 66/1104 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQ 94
            ++     DA L AEFE   +S ++F+YS SV   I P   V    ++ Y   +QRG  IQ
Sbjct: 25   VVAQTPVDAQLHAEFE---SSQRNFDYSSSVSAAIRP--SVSTSTVSTYHQTMQRGLYIQ 79

Query: 95   PFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGIDARTLFTPPSGASL 151
            PFGC+LAV   TF ++ YSEN  EMLDL   +    D      +G D RTLF   S  +L
Sbjct: 80   PFGCLLAVHPDTFTLLAYSENAPEMLDLTPHAVPTIDQRDALAVGADVRTLFRSQSSVAL 139

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             KAA   E++LLNPILVH+  R+  KPFYAILHRIDVG+VIDLEP    D  ++ AGA++
Sbjct: 140  HKAATFGEVNLLNPILVHA--RTSGKPFYAILHRIDVGLVIDLEPVNPVDVPVTAAGALK 197

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            S KLA  AISRLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+D+HGEV+SE RRS
Sbjct: 198  SYKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHEDEHGEVISECRRS 257

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
            DLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A  V +IQ   L QPL L  STLR+
Sbjct: 258  DLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATLVKIIQDDSLAQPLSLCGSTLRA 317

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPRYIP 378
             HGCH QYM NMGS+ASLVM+V I++ +               KLWGLVVCHHTSPR++P
Sbjct: 318  SHGCHAQYMANMGSVASLVMSVTISNDEEEDVDTGSDQQPKGRKLWGLVVCHHTSPRFVP 377

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LL DMLLRDAP  I TQSP++M
Sbjct: 378  FPLRYACEFLLQVFGIQLNKEVELAAQAKERHILRTQTLLWDMLLRDAPVGIFTQSPNVM 437

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDG ALYY  +  L+G TP+ES++K IA WL  NH   TGLSTDSL EAGYPGAA 
Sbjct: 438  DLVKCDGVALYYQNQLLLLGSTPSESEIKSIATWLQENHDGSTGLSTDSLVEAGYPGAAA 497

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAFLE 557
            L + VCGMA  +I+SKDF+FWFRSHT KE+KWGGAKH P +  DNG KMHPRSSFKAFLE
Sbjct: 498  LREVVCGMAAIKISSKDFIFWFRSHTTKEIKWGGAKHEPVDADDNGRKMHPRSSFKAFLE 557

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDELS 614
            VVK RS PWE  E++AIHSLQ+++R S Q+ E+ N + V+   +    +  K+QG+ EL 
Sbjct: 558  VVKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANRNNVRSIVKAPPDDTKKIQGLLELR 616

Query: 615  SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
            +V  EMVRLIETATAP+  VD +G INGWN K AELTGLP  EA+G+ LID VV  +S  
Sbjct: 617  TVTNEMVRLIETATAPVLAVDIAGNINGWNNKAAELTGLPVMEAIGRPLIDLVV-VDSIE 675

Query: 675  AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
             V+ ++  AL G E++N+E+KL+ F  Q+ +  + ++VN+C SRD    V GVCFVGQD+
Sbjct: 676  VVKRILDSALQGIEEQNLEIKLKAFHEQECNGPIILMVNSCCSRDLSEKVIGVCFVGQDL 735

Query: 735  THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
            T +K++MDK+ R+QGDY AI+++ + LIPPIF  ++   C EWN AM+K+TG  R +VI 
Sbjct: 736  TTQKMIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNKAMQKITGIQREDVID 795

Query: 795  ---------------------------------ITGQGTENFPFGFFNRQGQFVEVALTA 821
                                             I+GQ  E   FGFF+  G+++E  LT 
Sbjct: 796  KLLIGEVFTLHDYGCRVKDHATLTKLSILMNAVISGQDPEKLLFGFFDTDGKYIESLLTV 855

Query: 822  SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 881
            ++R +AEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YI QE++NPLNG++
Sbjct: 856  NKRINAEGKITGAICFLHVASPELQHALQVQKMSEQAATNSFKELTYIHQELRNPLNGMQ 915

Query: 882  FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILD 941
            F   LLE S ++E QR+ L ++  C+ Q+  I+   DL  IE+  ME+ + EF L   L+
Sbjct: 916  FTCNLLEPSELTEEQRKLLSSNILCQDQLKKILHDTDLESIEQCYMEMNTVEFNLEEALN 975

Query: 942  AVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE 1001
             V+ Q + L ++K + +  D P EI  + L GD +RLQ VL+D+L C ++     +G + 
Sbjct: 976  TVLMQGIPLGKEKRISIERDWPVEISRMYLYGDNLRLQQVLADYLACALQFTQPAEGPIV 1035

Query: 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL 1061
            ++V+P  + I    Q  H++FR+ HP  G+P  LI++M+   N   + EGLGL + +KL+
Sbjct: 1036 LQVIPKKENIGSGMQIAHLEFRIVHPAPGVPEALIQEMFR-HNPEVSREGLGLYICQKLV 1094

Query: 1062 IMMNGRVRYVRENSKCYFVIDLEL 1085
              M+G V+Y+RE     F+I +E 
Sbjct: 1095 KTMSGTVQYLREADTSSFIILIEF 1118


>gi|283131697|dbj|BAI63255.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1055 bits (2728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/654 (76%), Positives = 570/654 (87%), Gaps = 5/654 (0%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEML--DLRSRSEDFELNGLIGIDARTLFTPPSGAS 150
           IQPFGCMLA+EEP+F+IIGYSENC  +L  +L +  E  +  GLIGIDARTLF+P SG S
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFILLGLNLNNVFESNQERGLIGIDARTLFSPSSGVS 125

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP +SGDPALSLAGAV
Sbjct: 126 LVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPVRSGDPALSLAGAV 183

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR 
Sbjct: 184 QSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIRS 243

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTLR
Sbjct: 244 TDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTLR 303

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+Q
Sbjct: 304 APHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLMQ 363

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+Y
Sbjct: 364 AFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALFY 423

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
            G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGM TAR
Sbjct: 424 CGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMVTAR 483

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           ITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+SE
Sbjct: 484 ITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEISE 543

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           INAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+AP
Sbjct: 544 INAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASAP 602

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           IFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 603 IFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|422898333|dbj|BAM67032.1| phytochrome a [Chrysanthemum seticuspe f. boreale]
          Length = 1121

 Score = 1054 bits (2726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1130 (47%), Positives = 738/1130 (65%), Gaps = 69/1130 (6%)

Query: 18   NTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV------ISP 71
            ++ P +SS    +  +  + II     DA L A+FE+S   G SF+YS SV      I  
Sbjct: 3    SSRPTESSTNSARSKHSAR-IIQQTTVDAKLDADFEES---GDSFDYSSSVHVSTTVIDG 58

Query: 72   PEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----- 126
             +   ++  TAYL  IQ+G LIQPFGC+LA++E TF++I +SEN  EML + S +     
Sbjct: 59   QQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDEKTFKVIAFSENAPEMLTMVSHTVPTVG 118

Query: 127  EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRI 186
            E+  L   IG D RT+F  PS  +L KA    E+SLLNPILVH  +    KPFYAI+HR+
Sbjct: 119  ENPVLG--IGTDVRTIFAGPSATALFKALGFGEVSLLNPILVHCKTSG--KPFYAIIHRV 174

Query: 187  DVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLT 246
               ++ID EP    +  ++ AGA+QS K A  AI+RLQ+LP G I  LCDT+V++V +LT
Sbjct: 175  TGSLIIDFEPVMPNEVPMTAAGALQSYKHAAKAIARLQSLPSGSIERLCDTMVQEVFELT 234

Query: 247  GYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCH 306
            GYDRVM Y FHDDDHGEVV+EI +  L+PYLG+H+PA DIPQAARFLF +N+VRMICDC 
Sbjct: 235  GYDRVMAYKFHDDDHGEVVAEITKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMICDCR 294

Query: 307  AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------ 360
            A  V V+Q K+L   L L  S LR+PH CHLQYM NM SIASLVMAV+IN  D       
Sbjct: 295  AKNVKVVQDKKLPFDLTLCGSNLRAPHSCHLQYMDNMTSIASLVMAVVINDMDEEGQTSE 354

Query: 361  ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                 KLWGLVVCH+T+PR++PFPLR+ACEFL Q F++ +  EL++  Q+ EKNILRTQ 
Sbjct: 355  PQKRKKLWGLVVCHNTTPRFVPFPLRFACEFLAQVFAIHINKELELENQILEKNILRTQT 414

Query: 417  LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
            LLCD+L+RDAP  IV+QSP+IMDLVKCDGAAL Y  + + +GV+PT+SQ+ DI  WL   
Sbjct: 415  LLCDLLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKVYRMGVSPTDSQIHDIVSWLYEY 474

Query: 477  HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
            H D TGLSTDSL +AGYPGA  LG  VCGMA+ R+T KD LFWFRS+TA E++WGGAKH 
Sbjct: 475  HMDSTGLSTDSLYDAGYPGALALGDVVCGMASVRLTEKDILFWFRSNTASEIRWGGAKHE 534

Query: 537  PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQ--EMEEENDS 594
               KD+G +MHPRSSFKAFLEVV+ RSFPW+  E++AIHSLQ++MR++ +  E+ E    
Sbjct: 535  KGEKDDGKRMHPRSSFKAFLEVVRMRSFPWKDFEMDAIHSLQLIMRNALKDNEVAELKTD 594

Query: 595  KVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLP 654
             +Q     N  K+ G+ EL +V  EMVRLIETA+ PI  VD+ G++NGWN K+AELTGL 
Sbjct: 595  VIQAGF--NELKLDGMQELEAVTSEMVRLIETASVPILAVDADGSVNGWNTKIAELTGLT 652

Query: 655  ASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNA 714
              EA+G +L+  +V + S   V+ ++  AL G+E+  V+ +++ +  +++   + ++VNA
Sbjct: 653  VEEAIGSNLL-TLVEDSSVETVQKMLNLALEGKEESGVQFEIKTYGSRRESGPITLVVNA 711

Query: 715  CTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACC 774
            C SRD   NV GVC + QDITH+K +MDKF R++GDY+AI+ + NPLIPPIF +DE   C
Sbjct: 712  CASRDVHENVVGVCCIAQDITHQKTIMDKFTRIEGDYKAIVHNPNPLIPPIFGTDEFGWC 771

Query: 775  SEWNAAMEKVTGWMRHEVI---------------------------------GITGQGTE 801
            SEWN AM +++G  R +VI                                  +T +  E
Sbjct: 772  SEWNQAMTELSGLSREQVIDKMLLGEVFGTHAASCRLSNEESFINLSIVLNKAMTSEEAE 831

Query: 802  NFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYA 861
               FGFF + G++V+  L AS+R D+EG V G FCF+Q+   DLQ A+  Q + +     
Sbjct: 832  KISFGFFAKNGKYVDCMLCASKRVDSEGTVTGLFCFLQLASKDLQQAIHFQRMSEQIAAK 891

Query: 862  KIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRC 921
            ++K LAY+R+++KNPL+GI F  K++E + + + Q++ L TS  C++Q+  ++D  DL  
Sbjct: 892  RLKALAYVRRQIKNPLSGIIFSRKMMEGTELGDEQKELLHTSALCQKQLNKVLDDTDLDS 951

Query: 922  IEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLV 981
            I +G ++L+  EF L  IL A VSQVM       + +++++ E++    L GD +RLQ V
Sbjct: 952  IVDGYLDLEMTEFTLQQILGASVSQVMTKSNIMGIQIVNNVAEDMLLEKLYGDSVRLQQV 1011

Query: 982  LSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYN 1041
            L+DFL   V   P+  G + I    G  LI  + Q V+++ R+TH G G+P  L+  M+ 
Sbjct: 1012 LADFLSLSVSCTPA-GGVLAIAANLGKDLIAKSVQLVNLELRITHTGGGVPEELLRQMF- 1069

Query: 1042 GRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRGRQ 1091
            G +   T EG+ L +SR LL +M+G V+Y+RE +K  F+I +EL + G +
Sbjct: 1070 GSSMDATEEGISLVISRNLLKLMSGDVQYLREATKSTFIITVELASAGTR 1119


>gi|283131681|dbj|BAI63247.1| phytochrome E [Pieris nana]
 gi|283131757|dbj|BAI63238.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1054 bits (2725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/655 (77%), Positives = 572/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131701|dbj|BAI63257.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1053 bits (2724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/655 (77%), Positives = 571/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP +SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPVRSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131699|dbj|BAI63256.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1053 bits (2722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/655 (77%), Positives = 571/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGM TA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMVTA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131689|dbj|BAI63251.1| phytochrome E [Pieris nana]
 gi|283131707|dbj|BAI63260.1| phytochrome E [Pieris japonica]
          Length = 657

 Score = 1053 bits (2722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/655 (77%), Positives = 571/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGID RTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDVRTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|9049368|dbj|BAA99410.1| phytochrome A [Armoracia rusticana]
          Length = 1122

 Score = 1053 bits (2722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1126 (47%), Positives = 739/1126 (65%), Gaps = 75/1126 (6%)

Query: 21   PFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPP--EGVP- 76
            P +SS+   +  +  + II     DA L A+FE+S   G SF+YS SV ++ P  E  P 
Sbjct: 6    PSQSSEGSRRSRHSAR-IIAQTTVDAKLHADFEES---GSSFDYSTSVRVTGPVVENQPP 61

Query: 77   --EEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFE 130
              ++  T YL  IQ+G LIQPFGC+LA++E TF++I YSEN  E+L + S +     +  
Sbjct: 62   RSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMASHAVPSVGEHP 121

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
            + G IG D R+LFT PS ++L KA    ++SLLNPILVH  + +  KPFYAI+HR+   I
Sbjct: 122  VLG-IGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCKTSA--KPFYAIVHRVTGSI 178

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            ++D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR
Sbjct: 179  IVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDR 238

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+DDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A   
Sbjct: 239  VMAYKFHEDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHA 298

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------- 360
             V+Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D           
Sbjct: 299  RVLQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTQ 358

Query: 361  ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                 +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ 
Sbjct: 359  PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQT 418

Query: 417  LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
            LLCDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G TP+E  L++IA WL   
Sbjct: 419  LLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSELHLQEIASWLYEY 478

Query: 477  HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
            H D TGLSTDSL +AG+P A  LG AVCGMA  RI+ KD +FWFRSHTA EV+WGGAKH+
Sbjct: 479  HTDSTGLSTDSLHDAGFPKALSLGDAVCGMAAVRISLKDMIFWFRSHTAGEVRWGGAKHN 538

Query: 537  PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKV 596
            P+ +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +  
Sbjct: 539  PDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESTDVNTN 598

Query: 597  QGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPAS 656
              +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  
Sbjct: 599  IIHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVD 658

Query: 657  EAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACT 716
            EA+GK L+  +V + S   V+ ++  AL G E++NV+ +++  + +     + + VNAC 
Sbjct: 659  EAIGKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHQSRADAGTISLAVNACA 717

Query: 717  SRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776
            SRD   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+E
Sbjct: 718  SRDLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTE 777

Query: 777  WNAAMEKVTGWMRHEVI---------------------------------GITGQGTENF 803
            WN AM K+TG  R EVI                                  +T Q +E  
Sbjct: 778  WNPAMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFVNLGIVLNGAVTSQESEKV 837

Query: 804  PFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKI 863
             F FF R G+++E  L  S++ D EG V G FCF+Q+   +LQ AL  Q L +     ++
Sbjct: 838  SFAFFTRGGKYIECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTALKRL 897

Query: 864  KELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIE 923
            K +AYI+++++NPL+G+ F  +++E + +   QRQ L TS  C+ Q+  ++D  DL  I 
Sbjct: 898  KAIAYIKRQIRNPLSGVMFTREMIEGTELGPEQRQILHTSALCQEQLSKVLDDSDLESII 957

Query: 924  EGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLS 983
            EG ++L+ +EF L  +L A  SQVM+    K++ + ++  EE+ + +L GD IRLQ VL+
Sbjct: 958  EGCLDLEMKEFSLNEVLTASTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLA 1017

Query: 984  DFLHCVVRHAPSPDGWVEIKVLPGLKLIKD----ADQFVHVQFRLTHPGEGIPSHLIEDM 1039
            DF+   V   PS     ++ V   L+  KD    +    +++ RLTH G GIP  L+  M
Sbjct: 1018 DFMLMSVNFTPSGG---QLTVTASLR--KDQPGRSVHLAYLEIRLTHTGAGIPEFLLNQM 1072

Query: 1040 YNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + G  +  + EGL L +SRKL+ +MNG V+Y+R+  K  F+I  EL
Sbjct: 1073 F-GTEEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIISAEL 1117


>gi|9049366|dbj|BAA99409.1| phytochrome A [Armoracia rusticana]
          Length = 1122

 Score = 1052 bits (2721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1122 (47%), Positives = 735/1122 (65%), Gaps = 67/1122 (5%)

Query: 21   PFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPP--EGVP- 76
            P +SS+   +  +  + II     DA L A+FE+S   G SF+YS SV ++ P  E  P 
Sbjct: 6    PSQSSEGSRRSRHSAR-IIAQTTVDAKLHADFEES---GSSFDYSTSVRVTGPVVENQPP 61

Query: 77   --EEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFE 130
              ++  T YL  IQ+G LIQPFGC+LA++E TF++I YSEN  E+L + S +     +  
Sbjct: 62   RSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENSPELLTMASHAVPSVGEHP 121

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
            + G IG D R+LFT PS ++L KA    ++SLLNPILVH  + +  KPFYAI+HR+   I
Sbjct: 122  VLG-IGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCKTSA--KPFYAIVHRVTGSI 178

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            ++D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR
Sbjct: 179  IVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDR 238

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+DDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A   
Sbjct: 239  VMAYKFHEDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHA 298

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------- 360
             V+Q ++L   L L  STLR+PH CHLQYM NM SIAS VMAV++N +D           
Sbjct: 299  RVLQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASHVMAVVVNEEDGEGDATDSTTQ 358

Query: 361  ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                 +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ 
Sbjct: 359  PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQT 418

Query: 417  LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
            LLCDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G TP+E  L++IA WL   
Sbjct: 419  LLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSELHLQEIASWLYEY 478

Query: 477  HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
            H D TGLSTDSL +AG+P A  LG AVCGMA  RI+ KD +FWFRSHTA EV+WGGAKH+
Sbjct: 479  HTDSTGLSTDSLHDAGFPKALSLGDAVCGMAAVRISLKDMIFWFRSHTAGEVRWGGAKHN 538

Query: 537  PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKV 596
            P+ +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +  
Sbjct: 539  PDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESTDVNTN 598

Query: 597  QGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPAS 656
              +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  
Sbjct: 599  IIHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVD 658

Query: 657  EAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACT 716
            EA+GK L+  +V + S   V+ ++  AL G E++NV+ +++  + +     + + VNAC 
Sbjct: 659  EAIGKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHQSRADAGTISLAVNACA 717

Query: 717  SRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776
            SRD   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+E
Sbjct: 718  SRDLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTE 777

Query: 777  WNAAMEKVTGWMRHEVI---------------------------------GITGQGTENF 803
            WN AM K+TG  R EVI                                  +T Q +E  
Sbjct: 778  WNPAMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFVNLGIVLNGAVTSQESEKV 837

Query: 804  PFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKI 863
             F FF R G+++E  L  S++ D EG V G FCF+Q+   +LQ AL  Q L +     ++
Sbjct: 838  SFAFFTRGGKYIECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTALKRL 897

Query: 864  KELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIE 923
            K +AYI+++++NPL+G+ F  K++E + +   QRQ L TS  C+ Q+  ++D  DL  I 
Sbjct: 898  KAIAYIKRQIRNPLSGVMFTRKMMEGTELGPEQRQILHTSALCQEQLSKVLDDSDLESII 957

Query: 924  EGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLS 983
            EG ++L+ +EF L  +L A  SQVM+    K++ + ++  EE+ + +L GD IRLQ VL+
Sbjct: 958  EGCLDLEMKEFSLNEVLTASTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLA 1017

Query: 984  DFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGR 1043
            DF+   V   PS  G + +        +  +    +++ RLTH G GIP  L+  M+ G 
Sbjct: 1018 DFMLMSVNFTPS-GGQLTVTASLRKDQLGRSVHLAYLEIRLTHTGAGIPEFLLNQMF-GT 1075

Query: 1044 NQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             +  + EGL L +SRKL+ +MNG V+Y+R+  K  F+I  EL
Sbjct: 1076 EEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIISAEL 1117


>gi|283131679|dbj|BAI63246.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1052 bits (2721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/655 (77%), Positives = 570/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGID RTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDVRTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N  DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNDNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131691|dbj|BAI63252.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1052 bits (2721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/655 (77%), Positives = 570/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLEEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N  DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNDNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF  FLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNTFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131709|dbj|BAI63241.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1052 bits (2721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/655 (77%), Positives = 571/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSCGVVENLMCRAF 656


>gi|464380|sp|P33530.1|PHYA1_TOBAC RecName: Full=Phytochrome A1
 gi|297478|emb|CAA47284.1| type-A phytochrome [Nicotiana tabacum]
          Length = 1124

 Score = 1051 bits (2719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/1103 (49%), Positives = 728/1103 (66%), Gaps = 63/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV----ISPPEGVPEEQ--ITAYLSKIQRGG 91
            II     DA L A+FE+S   G SF+YS SV    ++  E  P+     TAYL++IQ+G 
Sbjct: 22   IIAQTTIDAKLHADFEES---GDSFDYSSSVRVTSVAGDERKPKSDRVTTAYLNQIQKGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS--EDFELNGL-IGIDARTLFTPPSG 148
             IQPFGC+LA++E TF++I +SEN  EML + S +     EL  L IG D RT+FT PS 
Sbjct: 79   FIQPFGCLLALDEKTFKVIAFSENAPEMLTMVSHAVPSVGELPALGIGTDIRTIFTGPSA 138

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            A+L KA    E+SLLNP+LVH  +    KP+YAI+HR+   ++ID EP K  +  ++ AG
Sbjct: 139  AALQKALGFGEVSLLNPVLVHCKTSG--KPYYAIVHRVTGSLIIDFEPVKPYEVPMTAAG 196

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AI+RLQALP G +  LCDT+V++V +LTGYDRVM Y FHDDDHGEVV+EI
Sbjct: 197  ALQSYKLAAKAITRLQALPSGSMERLCDTMVQEVFELTGYDRVMTYKFHDDDHGEVVAEI 256

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             +  L+PYLG+H+PA DIPQAARFLF +N+VRMICDC A  V V+Q ++L   L L  ST
Sbjct: 257  TKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLCGST 316

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPR 375
            LR+PH CHLQYM NM SIASLVMAV++N  D               +LWGLVVCH+T+PR
Sbjct: 317  LRAPHYCHLQYMENMSSIASLVMAVVVNDGDEEGESSDSTQSQKRKRLWGLVVCHNTTPR 376

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
            ++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLCDML+R AP  IV+QSP
Sbjct: 377  FVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRVAPLGIVSQSP 436

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            +IMDLVKCDGAAL Y  +   +G+TP++ QL DI  WL   H D TGLSTDSL +AG+PG
Sbjct: 437  NIMDLVKCDGAALLYKNKIHRLGMTPSDFQLHDIVSWLSEYHTDSTGLSTDSLYDAGFPG 496

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            A  LG  VCGMA  RI+ K +LFW+RSHTA EV+WGGAKH P  KD+G KMHPRSSFKAF
Sbjct: 497  ALALGDVVCGMAAVRISDKGWLFWYRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKAF 556

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK RS PW+  E++AIHSLQ+++R++ ++ +  + +    +T+ N  K+ G+ EL +
Sbjct: 557  LEVVKTRSVPWKDYEMDAIHSLQLILRNASKDADAMDSNTNIIHTKLNDLKIDGLQELEA 616

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETA+ PIF VD  G +NGWN K+AELTGLP  EA+G  L+  +V + S   
Sbjct: 617  VTAEMVRLIETASVPIFAVDVDGQLNGWNTKIAELTGLPVDEAIGNHLL-TLVEDSSVDT 675

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V  ++  AL G+E++NVE +++        S + ++VNAC SRD  ++V GVCF+ QDIT
Sbjct: 676  VSKMLELALQGKEERNVEFEIKTHGPSGDSSPISLIVNACASRDVGDSVVGVCFIAQDIT 735

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
             +K +MDKF R++GDY AIIQ+ +PLIPPIF +D+   CSEWN+AM K+TGW R +VI  
Sbjct: 736  GQKNIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTKLTGWRRDDVIDK 795

Query: 794  -------------------------------GITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            +TGQ      FGFF R G++VE  L  S
Sbjct: 796  MLLGEVFGTQAACCRLKNQEAFVNFGVVLNNAMTGQECAKISFGFFARNGKYVECLLCVS 855

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +R D EG V G FCF+Q+   +LQ AL  Q L +     ++K LAYIR++++NPL+GI F
Sbjct: 856  KRLDREGAVTGLFCFLQLASHELQQALHIQRLSEQTALKRLKVLAYIRRQIRNPLSGIIF 915

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              K+LE +++ E Q+  L TS  C+RQ+  I+D  DL  I +G ++L+  EF L  +L A
Sbjct: 916  SRKMLEGTNLGEEQKNILRTSSQCQRQLNKILDDTDLDSIIDGYLDLEMLEFKLHEVLVA 975

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
             +SQ+M+    KN+ +++D+ E++   +L GD  RLQ VL++FL   V   PS  G + I
Sbjct: 976  SISQIMMKSNGKNIMIVNDMVEDLLNETLYGDSPRLQQVLANFLLVCVNSTPS-GGQLSI 1034

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
                    I ++ Q   ++ R++H G G+P  L+  M+ G     + EG+ L +SRKL+ 
Sbjct: 1035 SGTLTKDRIGESVQLALLEVRISHTGGGVPEELLSQMF-GTEAEASEEGISLLISRKLVK 1093

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
            +MNG V+Y+RE  +  F+I +EL
Sbjct: 1094 LMNGEVQYLREAGRSTFIISVEL 1116


>gi|283131673|dbj|BAI63243.1| phytochrome E [Pieris nana]
 gi|283131695|dbj|BAI63254.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1051 bits (2718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/655 (77%), Positives = 570/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP +SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPVRSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGM TA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMVTA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131685|dbj|BAI63249.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1051 bits (2718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/655 (77%), Positives = 570/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP +SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPVRSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVGVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGM TA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMVTA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131761|dbj|BAI63236.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1051 bits (2718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/655 (77%), Positives = 571/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LP GDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPRGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131687|dbj|BAI63250.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1051 bits (2718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/655 (77%), Positives = 569/655 (86%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLEEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP +SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPVRSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N  DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNDNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGM TA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMVTA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131705|dbj|BAI63259.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1051 bits (2717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/655 (77%), Positives = 570/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP +SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPVRSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IV QSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVMQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131675|dbj|BAI63244.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1051 bits (2717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/655 (77%), Positives = 571/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +L  Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLWMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131671|dbj|BAI63242.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1050 bits (2716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/655 (77%), Positives = 569/655 (86%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPNFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP +SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPVRSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGM TA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMVTA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131693|dbj|BAI63253.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1050 bits (2716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/655 (76%), Positives = 570/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP +SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPVRSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGM TA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMVTA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITS+DFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSRDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131711|dbj|BAI63240.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1050 bits (2715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/655 (77%), Positives = 570/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LP GDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPRGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMFPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|130185|sp|P06592.1|PHYA_CUCPE RecName: Full=Phytochrome A
 gi|167501|gb|AAA33115.1| phytochrome [Cucurbita pepo]
 gi|225435|prf||1303260A phytochrome
          Length = 1124

 Score = 1050 bits (2715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1103 (48%), Positives = 726/1103 (65%), Gaps = 64/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            II   + DA + A+FE+S   G SF+YS SV    +   ++Q       TAYL  IQ+G 
Sbjct: 22   IIAQTSVDANVQADFEES---GNSFDYSSSVRVTSDVSGDQQPRSDKVTTAYLHHIQKGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA+++ TF++I YSEN  EML + S +     D+ + G IG D RT+FT PS
Sbjct: 79   LIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLG-IGTDVRTIFTAPS 137

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             ++L KA    E++LLNPILVH  +    KPFYAI+HR+   ++ID EP K  +  ++ A
Sbjct: 138  ASALLKALGFGEVTLLNPILVHCKTSG--KPFYAIVHRVTGSLIIDFEPVKPYEGPVTAA 195

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FHDDDHGEV+SE
Sbjct: 196  GALQSYKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISE 255

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            + +  L+PYLG+H+PA DIPQAARFLF +N+VRMI DC A  + V+Q ++L+  L L  S
Sbjct: 256  VAKPGLQPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGS 315

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------MKLWGLVVCHHTSPR 375
            TLR+PH CHLQYM NM SIASLVMAV++N  D              +LWGLVVCH++SPR
Sbjct: 316  TLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEENEGPALQQQKRKRLWGLVVCHNSSPR 375

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
            ++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLCDML+RDAP  IV++SP
Sbjct: 376  FVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSP 435

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            +IMDLVK DGAAL Y  + W +G+TP + QL DIA WL   H D TGLSTDSL +AGYPG
Sbjct: 436  NIMDLVKSDGAALLYKKKIWRLGLTPNDFQLLDIASWLSEYHMDSTGLSTDSLYDAGYPG 495

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            A  LG  VCGMA  RIT+ D +FWFRSHTA E++WGGAKH    KD+  KMHPRSSFKAF
Sbjct: 496  AIALGDEVCGMAAVRITNNDMIFWFRSHTASEIRWGGAKHEHGQKDDARKMHPRSSFKAF 555

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK RS PW+  E++AIHSLQ+++R++F++ +    ++    T     K++G  EL S
Sbjct: 556  LEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDATEINRKSIQTTLGDLKIEGRQELES 615

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETAT PI  VD  G INGWN K+AELTGLP  +A+GK L+  +V + S   
Sbjct: 616  VTSEMVRLIETATVPILAVDLDGLINGWNTKIAELTGLPVDKAIGKHLL-TLVEDSSVEV 674

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V  ++  AL G+E++NV+ +++      +   + ++VNAC SRD + NV GV FV QDIT
Sbjct: 675  VRKMLFLALQGQEEQNVQFEIKTHGSHIEVGSISLVVNACASRDLRENVVGVFFVAQDIT 734

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
             +K++MDKF RL+GDY+AI+Q+ NPLIPPIF SDE   CSEWN AM K+TGW R EVI  
Sbjct: 735  GQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMAKLTGWSREEVIDK 794

Query: 794  -------------------------------GITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            + GQ  E   FGF  R G +VE  L  +
Sbjct: 795  MLLGEVFGVHKSCCRLKNQEAFVNLGIVLNNAMCGQDPEKASFGFLARNGMYVECLLCVN 854

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +  D +G V G FCF+Q+   +LQ AL  Q L +     +++ L YI+++++NPL+GI F
Sbjct: 855  KILDKDGAVTGFFCFLQLPSHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIF 914

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              +LLE + +   Q++ L TS  C++QI  ++D  D+  I +G ++L+ +EF L  +L  
Sbjct: 915  SRRLLERTELGVEQKELLRTSGLCQKQISKVLDESDIDKIIDGFIDLEMDEFTLHEVLMV 974

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
             +SQVM+ ++ K + ++++ PEE  + +L GD +RLQ VL+DFL   V +APS  G + I
Sbjct: 975  SISQVMLKIKGKGIQIVNETPEEAMSETLYGDSLRLQQVLADFLLISVSYAPS-GGQLTI 1033

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
                    +  +   VH++FR+T+ G GIP  L+ +M+ G  +  + EG  L +SRKL+ 
Sbjct: 1034 STDVTKNQLGKSVHLVHLEFRITYAGGGIPESLLNEMF-GSEEDASEEGFSLLISRKLVK 1092

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
            +MNG VRY+RE  K  F+I +EL
Sbjct: 1093 LMNGDVRYMREAGKSSFIITVEL 1115


>gi|283131677|dbj|BAI63245.1| phytochrome E [Pieris nana]
 gi|283131773|dbj|BAI63230.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1050 bits (2714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/655 (77%), Positives = 571/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+  SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSLSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131755|dbj|BAI63239.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1049 bits (2713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/655 (77%), Positives = 570/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LP GDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPRGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSCGVVENLMCRAF 656


>gi|283131703|dbj|BAI63258.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1049 bits (2712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/655 (76%), Positives = 569/655 (86%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP +SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPVRSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSP Y+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPHYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGM TA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMVTA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131683|dbj|BAI63248.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1048 bits (2711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/655 (76%), Positives = 569/655 (86%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGID RTLF+P SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDVRTLFSPSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DI QAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDILQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N  DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNDNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131765|dbj|BAI63234.1| phytochrome E [Pieris nana]
 gi|283131769|dbj|BAI63232.1| phytochrome E [Pieris nana]
 gi|283131771|dbj|BAI63231.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1047 bits (2708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/655 (76%), Positives = 570/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+  SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSLSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D  GLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSKGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|258677125|gb|ACV87353.1| phytochrome A [Aquilegia formosa]
          Length = 1130

 Score = 1047 bits (2708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/1108 (47%), Positives = 727/1108 (65%), Gaps = 64/1108 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVI----SPPEGVPEEQITAYLSKIQRGGLI 93
            +I     DA L AEFE++   G SF+YSRSV     S  +   ++  TAYL +IQ+G  I
Sbjct: 22   VIAQTTVDAKLHAEFEET---GSSFDYSRSVSVTNSSNQQTRSDKVTTAYLHQIQKGKQI 78

Query: 94   QPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGA 149
            QPFGC+LA++E T ++I YSEN  EML + S +     +  + G IG D +T+ T PS +
Sbjct: 79   QPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGEHPVLG-IGTDLKTILTSPSAS 137

Query: 150  SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
            +L KA A  +++LLNPILVH  S    KPFYAI+HR+   ++ID EP K  +  ++ AGA
Sbjct: 138  ALQKALAFSDVTLLNPILVHCKSSG--KPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGA 195

Query: 210  VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
            +QS KLA  AI+RLQ+LP G I  LCDTVVE+V +LTGYDRVM+Y FHDDDHGEVVSE  
Sbjct: 196  LQSYKLAAKAIARLQSLPSGSIDRLCDTVVEEVFQLTGYDRVMVYKFHDDDHGEVVSETT 255

Query: 270  RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +  L PYLG+H+PA DIPQAARFLF +N++RMICDC A  V V+Q ++L   L L  STL
Sbjct: 256  KEGLPPYLGLHYPATDIPQAARFLFMKNKIRMICDCRAKHVRVLQDEKLPFELTLCGSTL 315

Query: 330  RSPHGCHLQYMTNMGSIASLVMAVIINSKDS--------------MKLWGLVVCHHTSPR 375
            R+PH CHLQYM NM SIASLVMAV+IN  D                +LWGLVVCH+T+PR
Sbjct: 316  RAPHSCHLQYMENMDSIASLVMAVVINDGDEEEGTVEGASQSQKRKRLWGLVVCHNTTPR 375

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
            ++PFPLRYACEFL+Q F++ +  E ++  Q+ EKNILRTQ LLCDML+R+AP  IV+QSP
Sbjct: 376  FVPFPLRYACEFLIQVFAIHVNKEFELENQILEKNILRTQTLLCDMLMRNAPIGIVSQSP 435

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            +IMDLVKCDGAAL Y  + W +G++P+ES ++DIA WL   H D TGLSTDSL +AG+PG
Sbjct: 436  NIMDLVKCDGAALLYQNKIWRLGLSPSESHIRDIASWLSEYHMDSTGLSTDSLYDAGFPG 495

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            A  +G  VCGMA  RI SKD LFWFRSHTA E++WGGAKH P  KD+G KMHPRSSFKAF
Sbjct: 496  ALSIGDTVCGMAAVRINSKDMLFWFRSHTAGEIRWGGAKHEPGEKDDGRKMHPRSSFKAF 555

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK RSFPW+  E++AIHSLQ+++R++F+++E  + +    ++Q +  K+ G++EL +
Sbjct: 556  LEVVKTRSFPWKDFEMDAIHSLQLILRNTFKDIETADGNTNVIHSQLDKLKIDGMEELEA 615

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETAT PI  VD +G INGWN K+AELTGLP  + +GK  + ++V E S   
Sbjct: 616  VTNEMVRLIETATVPILAVDINGLINGWNTKIAELTGLPVDQVIGKHFL-KLVEESSAET 674

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+ ++  ALLG+E++NV  +++    +K    V ++VNAC SRD + NV GVCFV  D+T
Sbjct: 675  VKRMLHLALLGKEEQNVHFEMKTHGSKKDSGPVSLVVNACASRDLQENVVGVCFVAHDLT 734

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
            ++K++MDKF R++GDY+AI+Q+ +PL PPIF +DE   C EWN AM K++GW R EV+  
Sbjct: 735  NQKMVMDKFTRIEGDYKAILQNPSPLYPPIFGTDEFGWCCEWNPAMTKLSGWDRAEVMDK 794

Query: 794  -------------------------------GITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            + G+ T+   FGFF R G +V+  L+ +
Sbjct: 795  MLLGEIFGTNMSCCRLKNQETFVNLGIVLNGAMMGEETDKVSFGFFGRNGNYVDCLLSVT 854

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            ++ D EG V G FCF+  +  +LQ AL  Q L +     K K L Y++++++NPL+GI F
Sbjct: 855  KKVDGEGVVTGVFCFLHTVSQELQQALHVQRLSEQSALQKSKGLTYMKRQIRNPLSGIIF 914

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              K++  + + E Q+Q L TS  C+RQ+  +++  DL  I +G ++ K  EF L  +L  
Sbjct: 915  SGKMMGGTDLDEEQKQLLHTSMHCQRQLHKVLEDTDLERIMDGYVDSKMIEFTLREVLIT 974

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
             +SQV +    ++L   +D  E+    +L GD +RLQ VL+DF+   V+  P   G + I
Sbjct: 975  CISQVKIESDRRSLRFTNDSLEDFMTETLYGDSLRLQQVLADFMLVSVKFTPK-GGQIGI 1033

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
                    + ++    H++ RLTH G GIP  L+  M+   ++  + EG+ L + RKLL 
Sbjct: 1034 SASLTRNRLGESVHLAHLELRLTHSGGGIPEELLSHMFESDSE-ASEEGVSLLVCRKLLK 1092

Query: 1063 MMNGRVRYVRENSKCYFVIDLELKTRGR 1090
            +MNG V+Y+RE  K  F+I +EL +  +
Sbjct: 1093 VMNGDVQYLREAGKSSFIIPVELASASK 1120


>gi|283131767|dbj|BAI63233.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/655 (76%), Positives = 570/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+  SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSLSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LPGGDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPGGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLMEKKVLRMQTLLCDMCLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D  GLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSKGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|283131759|dbj|BAI63237.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/655 (76%), Positives = 570/655 (87%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+  SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSLSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LP GDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPRGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D TGLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSTGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|9049364|dbj|BAA99408.1| phytochrome A [Armoracia rusticana]
          Length = 1122

 Score = 1045 bits (2703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1122 (47%), Positives = 738/1122 (65%), Gaps = 67/1122 (5%)

Query: 21   PFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPP--EGVP- 76
            P +SS+   +  +  + II     DA L A+FE+S   G SF+YS SV ++ P  E  P 
Sbjct: 6    PSQSSEGSRRSRHSAR-IIAQTTVDAKLHADFEES---GSSFDYSTSVRVTGPVVENQPP 61

Query: 77   --EEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFE 130
              ++  T YL  IQ+G LIQPFGC+LA++E TF++I YSEN  E+L + S +     +  
Sbjct: 62   RSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMASHAVPSVGEHP 121

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
            + G IG D R+LFT PS ++L KA    ++SLLNPILVH  + +  KPFYAI+HR+   I
Sbjct: 122  VLG-IGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCKTSA--KPFYAIVHRVTGSI 178

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            ++D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR
Sbjct: 179  IVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDR 238

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+DDHGEVVSE+ +  +EPYLG+H+PA DIPQAARFLF +N+VRMI DC+A   
Sbjct: 239  VMAYKFHEDDHGEVVSEVTKPGMEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHA 298

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------- 360
             V+Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D           
Sbjct: 299  RVLQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTQ 358

Query: 361  ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                 +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ 
Sbjct: 359  PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQT 418

Query: 417  LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
            LLCDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G TP+E  L++IA WL   
Sbjct: 419  LLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSEFHLQEIASWLYEY 478

Query: 477  HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
            H D TGLSTDSL +AG+P A  LG AVCGMA  RI+SKD +FWFRSHTA EV+WGGAKH 
Sbjct: 479  HTDSTGLSTDSLYDAGFPKALSLGDAVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHD 538

Query: 537  PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKV 596
            P+ +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +  
Sbjct: 539  PDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESTDVNTK 598

Query: 597  QGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPAS 656
              +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  
Sbjct: 599  FIHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVD 658

Query: 657  EAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACT 716
            EA+GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC 
Sbjct: 659  EAIGKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACA 717

Query: 717  SRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776
            SRD   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+E
Sbjct: 718  SRDLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTE 777

Query: 777  WNAAMEKVTGWMRHEVI---------------------------------GITGQGTENF 803
            WN AM K+TG  R EVI                                  +T Q +E  
Sbjct: 778  WNPAMSKLTGLKREEVIDKMLLGEVFGTQTACCRLKNQEAFVNLGIVLNSAVTSQESEKV 837

Query: 804  PFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKI 863
             F FF R G+++E  L  S++ D EG V G FCF+Q+   +LQ AL  Q L +     ++
Sbjct: 838  SFAFFTRGGKYIECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTALKRL 897

Query: 864  KELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIE 923
            K LAYI+++++NPL+GI F  K++E + +   QRQ L+TS  C++Q+  ++D  DL  I 
Sbjct: 898  KTLAYIKRQIRNPLSGIMFTRKMMEGTELGPEQRQILQTSSLCQKQLSKVLDDSDLERII 957

Query: 924  EGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLS 983
            EG ++L+ +EF L  +L A  SQVM+    K++ + ++  EE+ + +L GD IRLQ VL+
Sbjct: 958  EGCLDLEMKEFSLNEVLTASTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLA 1017

Query: 984  DFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGR 1043
            DF+   V   PS  G + +        +  +    +++ RLTH G GIP  L+  M+ G 
Sbjct: 1018 DFMLMSVNFTPS-GGQLTVTASLRKDQLGRSVHLAYLEIRLTHTGAGIPELLLNQMF-GT 1075

Query: 1044 NQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             +  + EGL L +SRKL+ +MNG V+Y+R+  K  F+I  EL
Sbjct: 1076 EKDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIISAEL 1117


>gi|283131763|dbj|BAI63235.1| phytochrome E [Pieris nana]
          Length = 657

 Score = 1045 bits (2701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/655 (76%), Positives = 569/655 (86%), Gaps = 7/655 (1%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           N+    +  YNADAGLL EF+QS  SGKSFNYSRSV++ P+ VP EQITAYLS+IQRGGL
Sbjct: 6   NRKSKAVALYNADAGLLDEFDQSADSGKSFNYSRSVVNAPKTVPAEQITAYLSRIQRGGL 65

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELN---GLIGIDARTLFTPPSGA 149
           IQPFGCMLA+EEP+F+IIGYSENC  +L L   +  FE N   GLIGIDARTLF+  SG 
Sbjct: 66  IQPFGCMLAIEEPSFKIIGYSENCFNLLGLNLNNV-FESNQERGLIGIDARTLFSLSSGV 124

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL  A  S+EISLLNPI VHS  R+ +KPFYAILHRIDVGIVIDLEP++SGDPALSLAGA
Sbjct: 125 SLVNAVGSKEISLLNPIWVHS--RNTQKPFYAILHRIDVGIVIDLEPARSGDPALSLAGA 182

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKL V AISRLQ+LP GDIG+LCD VVEDVQKLTGYDRVM+Y FHDDDHGEVVSEIR
Sbjct: 183 VQSQKLVVRAISRLQSLPRGDIGVLCDRVVEDVQKLTGYDRVMVYKFHDDDHGEVVSEIR 242

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +DLEPYLG+H+PA DIPQAARFLFKQNRVRMICDCH+  V VI + ELKQPLCLVNSTL
Sbjct: 243 STDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCHSSQVRVIGTDELKQPLCLVNSTL 302

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AV++N+ DSMKLWGLVVCHHTSPRY+PFPLRYACEFL+
Sbjct: 303 RAPHGCHTQYMANMGSIASLVLAVVVNNNDSMKLWGLVVCHHTSPRYVPFPLRYACEFLM 362

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQLYMELQ+A QL EK +LR Q LLCDM LRDAPF IVTQSPSIMDLVKCDGAAL+
Sbjct: 363 QAFGLQLYMELQLASQLVEKKVLRMQTLLCDMRLRDAPFGIVTQSPSIMDLVKCDGAALF 422

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           Y G+CWL+GVTPT+SQ+KDIA WLL NH D  GLSTDSLA+AGYP AALLG AVCGMATA
Sbjct: 423 YCGKCWLLGVTPTKSQVKDIAEWLLKNHADSKGLSTDSLADAGYPSAALLGDAVCGMATA 482

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGA HHPE KD+GG+M+PRSSF AFLEVVK+RS PWE+S
Sbjct: 483 RITSKDFLFWFRSHTAKEVKWGGAMHHPEDKDDGGRMYPRSSFNAFLEVVKSRSLPWEIS 542

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EINAIHSLQ++MRDS++ M E++  K    TQ + SK+QG+DELSSVACEMVRLIETA+A
Sbjct: 543 EINAIHSLQLIMRDSYR-MIEDSGPKGLVYTQIHDSKVQGLDELSSVACEMVRLIETASA 601

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           PIFGVDS+G INGWNAK+ ELTGL ASEA+GKSL++++V E+S+G VENL+CRA 
Sbjct: 602 PIFGVDSAGLINGWNAKIVELTGLQASEAIGKSLLNDIVREDSRGVVENLMCRAF 656


>gi|357441993|ref|XP_003591274.1| Phytochrome A [Medicago truncatula]
 gi|355480322|gb|AES61525.1| Phytochrome A [Medicago truncatula]
          Length = 1171

 Score = 1044 bits (2700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/1129 (47%), Positives = 739/1129 (65%), Gaps = 64/1129 (5%)

Query: 18   NTTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPP-EGVP 76
             T P +SS+   +  N  + II     DA L A FE+S +S    +  R   S   E  P
Sbjct: 50   TTRPSQSSNNSGRSRNSAR-IIAQTTVDAKLHATFEESGSSFDYSSSVRVSGSVDGEHQP 108

Query: 77   EEQ--ITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFE 130
                  TAYL+ IQRG  IQPFGC+LA++E T ++I YSEN  EML + S +     D  
Sbjct: 109  RSNKVTTAYLNTIQRGKQIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHP 168

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
              G IG D RT+FT PS ++L KA    E+SLLNPILVH  +    KPFYAI+HR+   +
Sbjct: 169  ALG-IGTDIRTIFTAPSASALQKALGFAEVSLLNPILVHCKTSG--KPFYAIIHRVTGSL 225

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            +ID EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR
Sbjct: 226  IIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDR 285

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+DDHGEV++E+ ++ LEPYLG+H+PA DIPQAARFLF +N+VRMI DCHA  V
Sbjct: 286  VMAYKFHEDDHGEVIAEVTKTGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHV 345

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------- 359
             V+Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N  D           
Sbjct: 346  KVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLP 405

Query: 360  --SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVL 417
                +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ L
Sbjct: 406  QKKKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEFQILEKNILRTQTL 465

Query: 418  LCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNH 477
            LCDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W++G TP+E Q+++IA W+   H
Sbjct: 466  LCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYRNKLWILGATPSEPQIREIALWMSEYH 525

Query: 478  GDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP 537
             D TGLSTDSL++AG+PGA  L   VCGMA  RITSKD +FWFRSHTA E++WGGAKH P
Sbjct: 526  TDSTGLSTDSLSDAGFPGALKLNDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEP 585

Query: 538  EHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQ 597
              +D+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++ ++ +  + +   
Sbjct: 586  GEQDDGRKMHPRSSFKAFLEVVKARSIPWKDFEMDAIHSLQLILRNASKDTDMIDLNSKA 645

Query: 598  GNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASE 657
             NT+ N  K++G+ EL +V  EMVRLIETAT PI  VD  G +NGWN K++ELTGLP  E
Sbjct: 646  INTRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGMVNGWNIKISELTGLPVGE 705

Query: 658  AMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTS 717
            A+GK L+  +V + S   V+ ++  AL G+E+KNV+ +++    +     + ++VNAC S
Sbjct: 706  AIGKHLLT-LVEDSSTDIVKKMLNLALQGQEEKNVQFEIKTHGSKTDCGPISLIVNACAS 764

Query: 718  RDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEW 777
            RD   NV GVCFV QDIT +K +MDKF R++GDY+AI+Q+ N LIPPIF +DE   C EW
Sbjct: 765  RDLHENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEW 824

Query: 778  NAAMEKVTGWMRHEVI---------------------------------GITGQGTENFP 804
            NAAM K+TGW R EV+                                  +TG  TE  P
Sbjct: 825  NAAMIKITGWKREEVMDKMLLGEVFGTHMSCCRLKNQEAFVNFGIVLNKAMTGLETEKVP 884

Query: 805  FGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIK 864
            FGF +R+G++VE  L+ S++ DAEG V G FCF+Q+  P+LQ AL  Q L +     ++K
Sbjct: 885  FGFLSRKGKYVECLLSVSKKIDAEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLK 944

Query: 865  ELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEE 924
             L Y+R++++NPL+GI F  K+LE++ +   Q++ + TS  C+RQ+  I+D  DL  I +
Sbjct: 945  VLTYMRRQIRNPLSGIVFSSKMLENTELGTEQKRIVNTSSQCQRQLSKILDDSDLDSIID 1004

Query: 925  GNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSD 984
            G ++L+  EF L  +L   +SQVM     +++ +++D+ E I   +L GD +RLQ VL+D
Sbjct: 1005 GYLDLEMAEFTLHEVLVTSLSQVMNRSNTRSIRIVNDVAEHIAMETLYGDSLRLQQVLAD 1064

Query: 985  FLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRN 1044
            FL   +   P+  G V I      + +  +   V+++  +TH G G+   ++  M+ G N
Sbjct: 1065 FLLISINSTPN-GGQVVIAATLTKEQLGKSVHLVNLELSITHGGNGVAEAVLNQMF-GNN 1122

Query: 1045 QWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL----KTRG 1089
               + EG+ L +SRKLL +MNG VRY++E  K  F++ +EL    K RG
Sbjct: 1123 GLESEEGISLHISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAQKLRG 1171


>gi|297849258|ref|XP_002892510.1| hypothetical protein ARALYDRAFT_471053 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338352|gb|EFH68769.1| hypothetical protein ARALYDRAFT_471053 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1122

 Score = 1043 bits (2697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1122 (47%), Positives = 738/1122 (65%), Gaps = 67/1122 (5%)

Query: 21   PFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPP--EGVP- 76
            P +SS+   +  +  + II     DA L A+FE+S   G SF+YS SV ++ P  E  P 
Sbjct: 6    PTQSSEGSRRSRHSAR-IIAQTTVDAKLHADFEES---GSSFDYSTSVRVTGPVVENQPP 61

Query: 77   --EEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFE 130
              ++  T YL  IQ+G LIQPFGC+LA++E TF++I YSEN  E+L + S +     +  
Sbjct: 62   RSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENASELLTMASHAVPSVGEHP 121

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
            + G IG D R+LFT PS ++L KA    ++SLLNPILVH  + +  KPFYAI+HR+   I
Sbjct: 122  VLG-IGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCKTSA--KPFYAIIHRVTGSI 178

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            ++D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR
Sbjct: 179  IVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDR 238

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+DDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A   
Sbjct: 239  VMAYKFHEDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHA 298

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------- 360
             V+Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D           
Sbjct: 299  RVLQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDASTQ 358

Query: 361  ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                 +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ 
Sbjct: 359  PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQMLEKNILRTQT 418

Query: 417  LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
            LLCDML+RDAP  IV+QSP+IMDLVKCDGAAL+Y  + W +G TP+E  L++IA WL   
Sbjct: 419  LLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALFYKDKIWKLGTTPSEFHLQEIASWLCEY 478

Query: 477  HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
            H D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH 
Sbjct: 479  HMDSTGLSTDSLHDAGFPKALSLGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHD 538

Query: 537  PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKV 596
            P+ +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +  
Sbjct: 539  PDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSETTDVNTN 598

Query: 597  QGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPAS 656
              +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGL   
Sbjct: 599  VIHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLSVD 658

Query: 657  EAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACT 716
            EA+GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC 
Sbjct: 659  EAIGKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACA 717

Query: 717  SRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776
            SRD   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+E
Sbjct: 718  SRDLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTE 777

Query: 777  WNAAMEKVTGWMRHEVI---------------------------------GITGQGTENF 803
            WN AM K+TG  R EVI                                  +T Q  E  
Sbjct: 778  WNPAMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFVNLGIVLNNAVTSQDPEKV 837

Query: 804  PFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKI 863
             F FF R G++VE  L  S++ D EG V G FCF+Q+   +LQ AL  Q L +     ++
Sbjct: 838  SFAFFTRGGKYVECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTAVKRL 897

Query: 864  KELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIE 923
            K LAYI+++++NPL+GI F  K++E + +   QR+ L+TS  C++Q+  I+D  DL  I 
Sbjct: 898  KALAYIKRQIRNPLSGIMFTRKMIEGTELGPEQRRILQTSALCQKQLSKILDDSDLESII 957

Query: 924  EGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLS 983
            EG ++L+ +EF L  +L A  SQVM+    K++ + ++  EE+ + +L GD IRLQ VL+
Sbjct: 958  EGCLDLEMKEFSLNEVLTASTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLA 1017

Query: 984  DFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGR 1043
            DF+   V   PS  G + +      + +  +    +++ RLTH G GIP  L+  M+ G 
Sbjct: 1018 DFMLMSVNFTPS-GGQLTVTASLRKEQLGRSVHLANLEIRLTHTGAGIPEFLLNQMF-GT 1075

Query: 1044 NQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             +  + EGL L +SRKL+ +MNG V+Y+R+  K  F+I  EL
Sbjct: 1076 EEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAEL 1117


>gi|449458035|ref|XP_004146753.1| PREDICTED: phytochrome A-like [Cucumis sativus]
          Length = 1123

 Score = 1042 bits (2694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1111 (48%), Positives = 730/1111 (65%), Gaps = 64/1111 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            II   + DA L A+FE+S   G SF+YS SV    +   + Q       TAYL  IQ+G 
Sbjct: 22   IIAQTSVDAKLHADFEES---GNSFDYSSSVRVSSDVSGDHQPRSDKVTTAYLHHIQKGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA++E TF++I YSEN  EML + S +     D+ + G IG D RT+FT PS
Sbjct: 79   LIQPFGCLLALDEKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLG-IGTDVRTIFTAPS 137

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             ++L KA    E++LLNPILVH  +    KPFYAI+HR+   ++ID EP K  +  ++ A
Sbjct: 138  ASALLKALGFGEVTLLNPILVHCKTSG--KPFYAIVHRVTGSLIIDFEPVKPYEVPVTAA 195

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FHDDDHGEV+SE
Sbjct: 196  GALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISE 255

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            + +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC A  + V+Q ++L+  L L  S
Sbjct: 256  VTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGS 315

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------MKLWGLVVCHHTSPR 375
            TLR+PH CHLQYM NM SIASLVMAV++N  D              +LWGLVVCH+TSPR
Sbjct: 316  TLRAPHSCHLQYMANMNSIASLVMAVVVNEGDEDAEGPALQQQKRKRLWGLVVCHNTSPR 375

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
            ++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLCDML+RDAP  IV++SP
Sbjct: 376  FVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSP 435

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            +IMDLVK DGAAL Y  + W +G+TP++  L+DIA WL   H D TGLSTDSL +AGYPG
Sbjct: 436  NIMDLVKSDGAALLYKNKIWRLGMTPSDFHLRDIASWLAEYHMDSTGLSTDSLYDAGYPG 495

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            A  LG  VCGMA  RIT+ D +FWFRSHTA E++WGGAKH    KD+G KMHPRSSFKAF
Sbjct: 496  ALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAF 555

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK RS PW+  E++AIHSLQ+++R++F++ + +  ++          K++G  EL S
Sbjct: 556  LEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTDEINRKSIQMTLGDLKIEGRQELES 615

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETAT PI  VD  G INGWN K+AELTGLP  +A+GK L+  +V + S   
Sbjct: 616  VTSEMVRLIETATVPILAVDVDGLINGWNTKIAELTGLPVDKAIGKHLL-TLVEDTSVEV 674

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+ ++  AL G+E++NV+ +++      +   + ++VNAC SRD + NV GVCFV QDIT
Sbjct: 675  VKKMLYLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRENVVGVCFVAQDIT 734

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
             +K++MDKF RL+GDY+AI+Q+ NPLIPPIF SD+   CSEWNAAM K+TGW R EVI  
Sbjct: 735  GQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDQFGWCSEWNAAMTKLTGWSREEVIDK 794

Query: 794  -------------------------------GITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            ++GQ  E   FGFF R G +VE  L  +
Sbjct: 795  MLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFGRNGMYVECLLCVN 854

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +  D +G V G FCF+Q+   +LQ AL  Q L +     +++ L YI++ ++NPL+GI F
Sbjct: 855  KILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRHIQNPLSGIIF 914

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              +LLE + +   QR+ L TS  C++QI  +++  DL  I +G ++L+  EF L  +L  
Sbjct: 915  SRRLLERTELGTEQREILLTSLHCQKQISKVLEESDLDQIIDGFIDLEMVEFTLHEVLKV 974

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
             +SQVM+  + K + ++++  EE  + +L GD +RLQ VL+DFL   V +AP+  G ++I
Sbjct: 975  SISQVMIKSKGKAIQIVNETVEEAMSETLYGDSLRLQQVLADFLLLSVSYAPA-GGQLKI 1033

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
                    +  +   VH++FR+T+ G GIP  L+ +M+    +  + EG  L +SRKL+ 
Sbjct: 1034 STNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEE-ASEEGFSLLISRKLVK 1092

Query: 1063 MMNGRVRYVRENSKCYFVIDLELKTRGRQKM 1093
            +MNG VRY+RE  K  F+I +EL    +  M
Sbjct: 1093 LMNGDVRYMREAGKSSFIITVELAAAHKASM 1123


>gi|15217562|ref|NP_172428.1| phytochrome A [Arabidopsis thaliana]
 gi|6093714|sp|P14712.2|PHYA_ARATH RecName: Full=Phytochrome A; AltName: Full=Protein ELONGATED
            HYPOCOTYL 8; AltName: Full=Protein FAR RED ELONGATED 1;
            AltName: Full=Protein FAR RED ELONGATED HYPOCOTYL 2
 gi|404670|gb|AAA21351.1| phytochrome A [Arabidopsis thaliana]
 gi|3482934|gb|AAC33219.1| phytochrome A [Arabidopsis thaliana]
 gi|14517372|gb|AAK62577.1| At1g09570/F14J9_27 [Arabidopsis thaliana]
 gi|332190341|gb|AEE28462.1| phytochrome A [Arabidopsis thaliana]
          Length = 1122

 Score = 1041 bits (2693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1122 (48%), Positives = 734/1122 (65%), Gaps = 67/1122 (5%)

Query: 21   PFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPP--EGVP- 76
            P +SS+   +  +  + II     DA L A+FE+S   G SF+YS SV ++ P  E  P 
Sbjct: 6    PTQSSEGSRRSRHSAR-IIAQTTVDAKLHADFEES---GSSFDYSTSVRVTGPVVENQPP 61

Query: 77   --EEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFE 130
              ++  T YL  IQ+G LIQPFGC+LA++E TF++I YSEN  E+L + S +     +  
Sbjct: 62   RSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENASELLTMASHAVPSVGEHP 121

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
            + G IG D R+LFT PS ++L KA    ++SLLNPILVH   R+  KPFYAI+HR+   I
Sbjct: 122  VLG-IGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHC--RTSAKPFYAIIHRVTGSI 178

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            +ID EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR
Sbjct: 179  IIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDR 238

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+DDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A   
Sbjct: 239  VMAYKFHEDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHA 298

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------- 360
             V+Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D           
Sbjct: 299  RVLQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDATTQ 358

Query: 361  ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                 +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ 
Sbjct: 359  PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELDNQMVEKNILRTQT 418

Query: 417  LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
            LLCDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G TP+E  L++IA WL   
Sbjct: 419  LLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSEFHLQEIASWLCEY 478

Query: 477  HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
            H D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH 
Sbjct: 479  HMDSTGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHD 538

Query: 537  PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKV 596
            P+ +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +  
Sbjct: 539  PDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSETTDVNTK 598

Query: 597  QGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPAS 656
               ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGL   
Sbjct: 599  VIYSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLSVD 658

Query: 657  EAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACT 716
            EA+GK  +  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC 
Sbjct: 659  EAIGKHFL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACA 717

Query: 717  SRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776
            SRD   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+E
Sbjct: 718  SRDLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTE 777

Query: 777  WNAAMEKVTGWMRHEVI---------------------------------GITGQGTENF 803
            WN AM K+TG  R EVI                                  +T Q  E  
Sbjct: 778  WNPAMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFVNLGIVLNNAVTSQDPEKV 837

Query: 804  PFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKI 863
             F FF R G++VE  L  S++ D EG V G FCF+Q+   +LQ AL  Q L +     ++
Sbjct: 838  SFAFFTRGGKYVECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTAVKRL 897

Query: 864  KELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIE 923
            K LAYI+++++NPL+GI F  K++E + +   QR+ L+TS  C++Q+  I+D  DL  I 
Sbjct: 898  KALAYIKRQIRNPLSGIMFTRKMIEGTELGPEQRRILQTSALCQKQLSKILDDSDLESII 957

Query: 924  EGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLS 983
            EG ++L+ +EF L  +L A  SQVM+    K++ + ++  EE+ + +L GD IRLQ VL+
Sbjct: 958  EGCLDLEMKEFTLNEVLTASTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLA 1017

Query: 984  DFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGR 1043
            DF+   V   PS  G + +        +  +    +++ RLTH G GIP  L+  M+ G 
Sbjct: 1018 DFMLMAVNFTPS-GGQLTVSASLRKDQLGRSVHLANLEIRLTHTGAGIPEFLLNQMF-GT 1075

Query: 1044 NQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             +  + EGL L +SRKL+ +MNG V+Y+R+  K  F+I  EL
Sbjct: 1076 EEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAEL 1117


>gi|240119375|dbj|BAH79236.1| phytochrome A [Cardamine nipponica]
          Length = 1122

 Score = 1040 bits (2690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1122 (47%), Positives = 734/1122 (65%), Gaps = 67/1122 (5%)

Query: 21   PFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPP--EGVP- 76
            P +SS+   +  +  + II     DA L A+FE+S   G SF+YS SV ++ P  E  P 
Sbjct: 6    PSQSSEGSRRSRHSAR-IIAQTTVDAKLHADFEES---GSSFDYSTSVRVTGPVVENQPP 61

Query: 77   --EEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFE 130
              ++  T YL  IQ+G LIQPFGC+LA++E TF++I YSEN  E+L + S +     +  
Sbjct: 62   RSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMASHAVPSVGEHP 121

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
            + G IG D R+LFT PS ++L KA    ++SLLNPILVH  + +  KPFYAI+HR+   I
Sbjct: 122  VLG-IGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCKTSA--KPFYAIVHRVTGSI 178

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            ++D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR
Sbjct: 179  IVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDR 238

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+DDHGEVVSE+ +  +EPYLG+H+PA DIPQAARFLF +N+VRMI DC+A   
Sbjct: 239  VMAYKFHEDDHGEVVSEVTKPGMEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHA 298

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------- 360
             V+Q K+L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D           
Sbjct: 299  RVLQDKKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTQ 358

Query: 361  ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                 +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ 
Sbjct: 359  PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQT 418

Query: 417  LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
            LLCDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G TP+E  L++IA WL   
Sbjct: 419  LLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSEFHLQEIASWLCEY 478

Query: 477  HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
            H D TGLSTDSL +AG+P A  LG +VCGMA  RI+ KD +FWFRSHTA EV+WGGAKH 
Sbjct: 479  HTDSTGLSTDSLHDAGFPKALALGDSVCGMAAVRISLKDVIFWFRSHTAGEVRWGGAKHD 538

Query: 537  PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKV 596
            P+ +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +  
Sbjct: 539  PDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESTDVNTK 598

Query: 597  QGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPAS 656
              +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  
Sbjct: 599  IIHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVD 658

Query: 657  EAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACT 716
            EA+GK L+  +V + S   V+ ++  AL G E++NV+ +++          + ++VNAC 
Sbjct: 659  EAIGKHLLT-LVEDSSVEIVKRMLENALEGNEEQNVQFEIKTHLSMADAGPISLVVNACA 717

Query: 717  SRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776
            SRD   N+ GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+E
Sbjct: 718  SRDLHENMVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTE 777

Query: 777  WNAAMEKVTGWMRHEVI---------------------------------GITGQGTENF 803
            WN AM K+TG  R EVI                                  +T Q +E  
Sbjct: 778  WNPAMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFLNLGIVLNSAVTSQESEKV 837

Query: 804  PFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKI 863
             F FF R G++VE  L  S++ D EG+V G FCF+Q+   +LQ AL  Q L +     ++
Sbjct: 838  SFAFFTRGGKYVECLLCVSKKLDREGEVTGVFCFLQLASHELQQALHVQRLAERTALKRL 897

Query: 864  KELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIE 923
            K LAYI+++++NPL+GI F  K++E + +   QRQ L TS  C+ Q+  ++D  DL  I 
Sbjct: 898  KALAYIKRQIRNPLSGIMFTRKMMEGTELGPEQRQILHTSALCQEQLSKVLDDSDLESII 957

Query: 924  EGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLS 983
            EG ++L+ +EF L  +L    SQVM+    K++ + ++  EE+ + +L GD IRLQ VL+
Sbjct: 958  EGCLDLEMKEFSLNEVLTTSTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLA 1017

Query: 984  DFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGR 1043
            DF+   V   PS  G + +        +  +    +++ RLTH G GIP  L+  M+ G 
Sbjct: 1018 DFMLMSVNFTPS-GGQLTVTASLRKDQLGRSVHLAYLEIRLTHTGAGIPEFLLNQMF-GT 1075

Query: 1044 NQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             +  + EGL L +SRKL+ +MNG V+Y+R+  K  F+I  EL
Sbjct: 1076 EEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAEL 1117


>gi|240119381|dbj|BAH79239.1| phytochrome A [Cardamine nipponica]
 gi|240119383|dbj|BAH79240.1| phytochrome A [Cardamine nipponica]
 gi|240119387|dbj|BAH79242.1| phytochrome A [Cardamine nipponica]
          Length = 1122

 Score = 1040 bits (2689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1122 (47%), Positives = 733/1122 (65%), Gaps = 67/1122 (5%)

Query: 21   PFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPP--EGVP- 76
            P +SS+   +  +  + II     DA L A+FE S   G SF+YS SV ++ P  E  P 
Sbjct: 6    PSQSSEGSRRSRHSAR-IIAQTTVDAKLHADFEDS---GSSFDYSTSVRVTGPVVENQPP 61

Query: 77   --EEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFE 130
              ++  T YL  IQ+G LIQPFGC+LA++E TF++I YSEN  E+L + S +     +  
Sbjct: 62   RSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMASHAVPSVGEHP 121

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
            + G IG D R+LFT PS ++L KA    ++SLLNPILVH  + +  KPFYAI+HR+   I
Sbjct: 122  VLG-IGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCKTSA--KPFYAIVHRVTGSI 178

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            ++D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR
Sbjct: 179  IVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDR 238

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+DDHGEVVSE+ +  +EPYLG+H+PA DIPQAARFLF +N+VRMI DC+A   
Sbjct: 239  VMAYKFHEDDHGEVVSEVTKPGMEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHA 298

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------- 360
             V+Q K+L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D           
Sbjct: 299  RVLQDKKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTQ 358

Query: 361  ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                 +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ 
Sbjct: 359  PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQT 418

Query: 417  LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
            LLCDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G TP+E  L++IA WL   
Sbjct: 419  LLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSEFHLQEIASWLCEY 478

Query: 477  HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
            H D TGLSTDSL +AG+P A  LG +VCGMA  RI+ KD +FWFRSHTA EV+WGGAKH 
Sbjct: 479  HTDSTGLSTDSLHDAGFPKALALGDSVCGMAAVRISLKDVIFWFRSHTAGEVRWGGAKHD 538

Query: 537  PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKV 596
            P+ +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +  
Sbjct: 539  PDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESTDVNTK 598

Query: 597  QGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPAS 656
              +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  
Sbjct: 599  IIHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVD 658

Query: 657  EAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACT 716
            EA+GK L+  +V + S   V+ ++  AL G E++NV+ +++          + ++VNAC 
Sbjct: 659  EAIGKHLL-TLVEDSSVEIVKRMLENALEGNEEQNVQFEIKTHLSMADAGPISLVVNACA 717

Query: 717  SRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776
            SRD   N+ GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+E
Sbjct: 718  SRDLHENMVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTE 777

Query: 777  WNAAMEKVTGWMRHEVI---------------------------------GITGQGTENF 803
            WN AM K+TG  R EVI                                  +T Q +E  
Sbjct: 778  WNPAMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFLNLGIVLNSAVTSQESEKV 837

Query: 804  PFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKI 863
             F FF R G++VE  L  S++ D EG V G FCF+Q+   +LQ AL  Q L +     ++
Sbjct: 838  SFAFFTRGGKYVECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTALKRL 897

Query: 864  KELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIE 923
            K LAYI+++++NPL+GI F  K++E + +   QRQ L TS  C+ Q+  ++D  DL  I 
Sbjct: 898  KALAYIKRQIRNPLSGIMFTRKMMEGTELGPEQRQILHTSALCQEQLSKVLDDSDLESII 957

Query: 924  EGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLS 983
            EG ++L+ +EF L  +L A  SQVM+    K++ + ++  EE+ + +L GD IRLQ VL+
Sbjct: 958  EGCLDLEMKEFSLNEVLTASTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLA 1017

Query: 984  DFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGR 1043
            DF+   V   PS  G + +        +  +    +++ RLTH G GIP  L+  M+ G 
Sbjct: 1018 DFMLMSVNFTPS-GGQLTVTASLRKDQLGRSVHLAYLEIRLTHTGAGIPEFLLNQMF-GT 1075

Query: 1044 NQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             +  + EGL L +SRKL+ +MNG V+Y+R+  K  F+I  EL
Sbjct: 1076 EEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAEL 1117


>gi|240119377|dbj|BAH79237.1| phytochrome A [Cardamine nipponica]
          Length = 1122

 Score = 1040 bits (2688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1122 (47%), Positives = 734/1122 (65%), Gaps = 67/1122 (5%)

Query: 21   PFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPP--EGVP- 76
            P +SS+   +  +  + II     DA L A+FE+S   G SF+YS SV ++ P  E  P 
Sbjct: 6    PSQSSEGSRRSRHSAR-IIAQTTVDAKLHADFEES---GSSFDYSTSVRVTGPVVENQPP 61

Query: 77   --EEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFE 130
              ++  T YL  IQ+G LIQPFGC+LA++E TF++I YSEN  E+L + S +     +  
Sbjct: 62   RSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMASHAVPSVGEHP 121

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
            + G IG D R+LFT PS ++L KA    ++SLLNPILVH  + +  KPFYAI+HR+   I
Sbjct: 122  VLG-IGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCKTSA--KPFYAIVHRVTGSI 178

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            ++D EP K  + +++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR
Sbjct: 179  IVDFEPVKPYEVSMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDR 238

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+DDHGEVVSE+ +  +EPYLG+H+PA DIPQAARFLF +N+VRMI DC+A   
Sbjct: 239  VMAYKFHEDDHGEVVSEVTKPGMEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHA 298

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------- 360
             V+Q K+L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D           
Sbjct: 299  RVLQDKKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTQ 358

Query: 361  ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                 +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ 
Sbjct: 359  PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQT 418

Query: 417  LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
            LLCDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G TP+E  L++IA WL   
Sbjct: 419  LLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSEFHLQEIASWLCEY 478

Query: 477  HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
            H D TGLSTDSL +AG+P A  LG +VCGMA  RI+ KD +FWFRSHTA EV+WGGAKH 
Sbjct: 479  HTDSTGLSTDSLHDAGFPKALALGDSVCGMAAVRISLKDVIFWFRSHTAGEVRWGGAKHD 538

Query: 537  PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKV 596
            P+ +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +  
Sbjct: 539  PDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESTDVNTK 598

Query: 597  QGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPAS 656
              +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  
Sbjct: 599  IIHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVD 658

Query: 657  EAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACT 716
            EA+GK L+  +V + S   V+ ++  AL G E++NV+ +++          + ++VNAC 
Sbjct: 659  EAIGKHLL-TLVEDSSVEIVKRMLENALEGNEEQNVQFEIKTHLSMADAGPISLVVNACA 717

Query: 717  SRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776
            SRD   N+ GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+E
Sbjct: 718  SRDLHENMVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTE 777

Query: 777  WNAAMEKVTGWMRHEVI---------------------------------GITGQGTENF 803
            WN AM K+TG  R EVI                                  +T Q +E  
Sbjct: 778  WNPAMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFLNLGIVLNSAVTSQESEKV 837

Query: 804  PFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKI 863
             F FF R G++VE  L  S++ D EG V G FCF+Q+   +LQ AL  Q L +     ++
Sbjct: 838  SFAFFTRGGKYVECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTALKRL 897

Query: 864  KELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIE 923
            K LAYI+++++NPL+GI F  K++E + +   QRQ L TS  C+ Q+  ++D  DL  I 
Sbjct: 898  KALAYIKRQIRNPLSGIMFTRKMMEGTELGPEQRQILHTSALCQEQLSKVLDDSDLESII 957

Query: 924  EGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLS 983
            EG ++L+ +EF L  +L    SQVM+    K++ + ++  EE+ + +L GD IRLQ VL+
Sbjct: 958  EGCLDLEMKEFSLNEVLTTSTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLA 1017

Query: 984  DFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGR 1043
            DF+   V   PS  G + +        +  +    +++ RLTH G GIP  L+  M+ G 
Sbjct: 1018 DFMLMSVNFTPS-GGQLTVTASLRKDQLGRSVHLAYLEIRLTHTGAGIPEFLLNQMF-GT 1075

Query: 1044 NQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             +  + EGL L +SRKL+ +MNG V+Y+R+  K  F+I  EL
Sbjct: 1076 EEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAEL 1117


>gi|240119385|dbj|BAH79241.1| phytochrome A [Cardamine nipponica]
          Length = 1122

 Score = 1040 bits (2688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1122 (47%), Positives = 733/1122 (65%), Gaps = 67/1122 (5%)

Query: 21   PFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPP--EGVP- 76
            P +SS+   +  +  + II     DA L A+FE S   G SF+YS SV ++ P  E  P 
Sbjct: 6    PSQSSEGSRRSRHSAR-IIAQTTVDAKLHADFEDS---GSSFDYSTSVRVTGPVVENQPP 61

Query: 77   --EEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFE 130
              ++  T YL  IQ+G LIQPFGC+LA++E TF++I YSEN  E+L + S +     +  
Sbjct: 62   RSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMASHAVPSVGEHP 121

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
            + G IG D R+LFT PS ++L KA    ++SLLNPILVH  + +  KPFYAI+HR+   I
Sbjct: 122  VLG-IGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCKTSA--KPFYAIVHRVTGSI 178

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            ++D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR
Sbjct: 179  IVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDR 238

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+DDHGEVVSE+ +  +EPYLG+H+PA DIPQAARFLF +N+VRMI DC+A   
Sbjct: 239  VMAYKFHEDDHGEVVSEVTKPGMEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHA 298

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------- 360
             V+Q K+L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D           
Sbjct: 299  RVLQDKKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTQ 358

Query: 361  ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                 +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ 
Sbjct: 359  PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQT 418

Query: 417  LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
            LLCDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G TP+E  L++IA WL   
Sbjct: 419  LLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSEFHLQEIATWLCEY 478

Query: 477  HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
            H D TGLSTDSL +AG+P A  LG +VCGMA  RI+ KD +FWFRSHTA EV+WGGAKH 
Sbjct: 479  HTDSTGLSTDSLHDAGFPKALALGDSVCGMAAVRISLKDVIFWFRSHTAGEVRWGGAKHD 538

Query: 537  PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKV 596
            P+ +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +  
Sbjct: 539  PDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESTDVNTK 598

Query: 597  QGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPAS 656
              +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  
Sbjct: 599  IIHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVD 658

Query: 657  EAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACT 716
            EA+GK L+  +V + S   V+ ++  AL G E++NV+ +++          + ++VNAC 
Sbjct: 659  EAIGKHLL-TLVEDSSVEIVKRMLENALEGNEEQNVQFEIKTHLSMADAGPISLVVNACA 717

Query: 717  SRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776
            SRD   N+ GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+E
Sbjct: 718  SRDLHENMVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTE 777

Query: 777  WNAAMEKVTGWMRHEVI---------------------------------GITGQGTENF 803
            WN AM K+TG  R EVI                                  +T Q +E  
Sbjct: 778  WNPAMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFLNLGIVLNSAVTSQESEKV 837

Query: 804  PFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKI 863
             F FF R G++VE  L  S++ D EG V G FCF+Q+   +LQ AL  Q L +     ++
Sbjct: 838  SFAFFTRGGKYVECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTALKRL 897

Query: 864  KELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIE 923
            K LAYI+++++NPL+GI F  K++E + +   QRQ L TS  C+ Q+  ++D  DL  I 
Sbjct: 898  KALAYIKRQIRNPLSGIMFTRKMMEGTELGPEQRQILHTSALCQEQLSKVLDDSDLESII 957

Query: 924  EGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLS 983
            EG ++L+ +EF L  +L A  SQVM+    K++ + ++  EE+ + +L GD IRLQ VL+
Sbjct: 958  EGCLDLEMKEFSLNEVLTASTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLA 1017

Query: 984  DFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGR 1043
            DF+   V   PS  G + +        +  +    +++ RLTH G GIP  L+  M+ G 
Sbjct: 1018 DFMLMSVNFTPS-GGQLTVTASLRKDQLGRSVHLAYLEIRLTHTGAGIPEFLLNQMF-GT 1075

Query: 1044 NQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             +  + EGL L +SRKL+ +MNG V+Y+R+  K  F+I  EL
Sbjct: 1076 EEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAEL 1117


>gi|449505651|ref|XP_004162532.1| PREDICTED: LOW QUALITY PROTEIN: phytochrome A-like [Cucumis sativus]
          Length = 1123

 Score = 1040 bits (2688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1111 (48%), Positives = 729/1111 (65%), Gaps = 64/1111 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            II   + DA L A+FE+S   G SF+YS SV    +   + Q       TAYL  IQ+G 
Sbjct: 22   IIAQTSVDAKLHADFEES---GNSFDYSSSVRVSSDVSGDHQPRSDKVTTAYLHHIQKGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA++  TF++I YSEN  EML + S +     D+ + G IG D RT+FT PS
Sbjct: 79   LIQPFGCLLALDXKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLG-IGTDVRTIFTAPS 137

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             ++L KA    E++LLNPILVH  +    KPFYAI+HR+   ++ID EP K  +  ++ A
Sbjct: 138  ASALLKALGFGEVTLLNPILVHCKTSG--KPFYAIVHRVTGSLIIDFEPVKPYEVPVTAA 195

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FHDDDHGEV+SE
Sbjct: 196  GALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISE 255

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            + +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC A  + V+Q ++L+  L L  S
Sbjct: 256  VTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGS 315

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------MKLWGLVVCHHTSPR 375
            TLR+PH CHLQYM NM SIASLVMAV++N  D              +LWGLVVCH+TSPR
Sbjct: 316  TLRAPHSCHLQYMANMNSIASLVMAVVVNEGDEDAEGPALQQQKRKRLWGLVVCHNTSPR 375

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
            ++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLCDML+RDAP  IV++SP
Sbjct: 376  FVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSP 435

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            +IMDLVK DGAAL Y  + W +G+TP++  L+DIA WL   H D TGLSTDSL +AGYPG
Sbjct: 436  NIMDLVKSDGAALLYKNKIWRLGMTPSDFHLRDIASWLAEYHMDSTGLSTDSLYDAGYPG 495

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            A  LG  VCGMA  RIT+ D +FWFRSHTA E++WGGAKH    KD+G KMHPRSSFKAF
Sbjct: 496  ALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAF 555

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK RS PW+  E++AIHSLQ+++R++F++ + +  ++          K++G  EL S
Sbjct: 556  LEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTDEINRKSIQMTLGDLKIEGRQELES 615

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETAT PI  VD  G INGWN K+AELTGLP  +A+GK L+  +V + S   
Sbjct: 616  VTSEMVRLIETATVPILAVDVDGLINGWNTKIAELTGLPVDKAIGKHLL-TLVEDTSVEV 674

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+ ++  AL G+E++NV+ +++      +   + ++VNAC SRD + NV GVCFV QDIT
Sbjct: 675  VKKMLYLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRENVVGVCFVAQDIT 734

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
             +K++MDKF RL+GDY+AI+Q+ NPLIPPIF SD+   CSEWNAAM K+TGW R EVI  
Sbjct: 735  GQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDQFGWCSEWNAAMTKLTGWSREEVIDK 794

Query: 794  -------------------------------GITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            ++GQ  E   FGFF R G +VE  L  +
Sbjct: 795  MLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFGRNGMYVECLLCVN 854

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            +  D +G V G FCF+Q+   +LQ AL  Q L +     +++ L YI++ ++NPL+GI F
Sbjct: 855  KILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRHIQNPLSGIIF 914

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              +LLE + +   QR+ L TS  C++QI  +++  DL  I +G ++L+  EF L  +L  
Sbjct: 915  SRRLLERTELGTEQREILLTSLHCQKQISKVLEESDLDQIIDGFIDLEMVEFTLHEVLKV 974

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
             +SQVM+  + K + ++++  EE  + +L GD +RLQ VL+DFL   V +AP+  G ++I
Sbjct: 975  SISQVMIKSKGKAIQIVNETVEEAMSETLYGDSLRLQQVLADFLLLSVSYAPA-GGQLKI 1033

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
                    +  +   VH++FR+T+ G GIP  L+ +M+    +  + EG  L +SRKL+ 
Sbjct: 1034 STNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEE-ASEEGFSLLISRKLVK 1092

Query: 1063 MMNGRVRYVRENSKCYFVIDLELKTRGRQKM 1093
            +MNG VRY+RE  K  F+I +EL    +  M
Sbjct: 1093 LMNGDVRYMREAGKSSFIITVELAAAHKASM 1123


>gi|240119373|dbj|BAH79235.1| phytochrome A [Cardamine nipponica]
          Length = 1122

 Score = 1039 bits (2687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1122 (47%), Positives = 734/1122 (65%), Gaps = 67/1122 (5%)

Query: 21   PFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPP--EGVP- 76
            P +SS+   +  +  + II     DA L A+FE+S   G SF+YS SV ++ P  E  P 
Sbjct: 6    PSQSSEGSRRSRHSAR-IIAQTTVDAKLHADFEES---GSSFDYSTSVRVTGPVVENQPP 61

Query: 77   --EEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFE 130
              ++  T YL  IQ+G LIQPFGC+LA++E TF++I YSEN  E+L + S +     +  
Sbjct: 62   RSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMASHAVPSVGEHP 121

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
            + G IG D R+LFT PS ++L KA    ++SLLNPILVH  + +  KPFYAI+HR+   I
Sbjct: 122  VLG-IGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCKTSA--KPFYAIVHRVTGSI 178

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            ++D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR
Sbjct: 179  IVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDR 238

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+DDHGEVVSE+ +  +EPYLG+H+PA DIPQAARFLF +N+VRMI DC+A   
Sbjct: 239  VMAYKFHEDDHGEVVSEVTKPGMEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHA 298

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------- 360
             V+Q K+L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D           
Sbjct: 299  RVLQDKKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTQ 358

Query: 361  ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                 +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ 
Sbjct: 359  PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQT 418

Query: 417  LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
            LLCDM++RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G TP+E  L++IA WL   
Sbjct: 419  LLCDMMMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSEFHLQEIASWLCEY 478

Query: 477  HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
            H D TGLSTDSL +AG+P A  LG +VCGMA  RI+ KD +FWFRSHTA EV+WGGAKH 
Sbjct: 479  HTDSTGLSTDSLHDAGFPKALALGDSVCGMAAVRISLKDVIFWFRSHTAGEVRWGGAKHD 538

Query: 537  PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKV 596
            P+ +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +  
Sbjct: 539  PDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESTDVNTK 598

Query: 597  QGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPAS 656
              +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  
Sbjct: 599  IIHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVD 658

Query: 657  EAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACT 716
            EA+GK L+  +V + S   V+ ++  AL G E++NV+ +++          + ++VNAC 
Sbjct: 659  EAIGKHLLT-LVEDSSVEIVKRMLENALEGNEEQNVQFEIKTHLSMADAGPISLVVNACA 717

Query: 717  SRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776
            SRD   N+ GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+E
Sbjct: 718  SRDLHENMVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTE 777

Query: 777  WNAAMEKVTGWMRHEVI---------------------------------GITGQGTENF 803
            WN AM K+TG  R EVI                                  +T Q +E  
Sbjct: 778  WNPAMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFLNLGIVLNSAVTSQESEKV 837

Query: 804  PFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKI 863
             F FF R G++VE  L  S++ D EG+V G FCF+Q+   +LQ AL  Q L +     ++
Sbjct: 838  SFAFFTRGGKYVECLLCVSKKLDREGEVTGVFCFLQLASHELQQALHVQRLAERTALKRL 897

Query: 864  KELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIE 923
            K LAYI+++++NPL+GI F  K++E + +   QRQ L TS  C+ Q+  ++D  DL  I 
Sbjct: 898  KALAYIKRQIRNPLSGIMFTRKMMEGTELGPEQRQILHTSALCQEQLSKVLDDSDLESII 957

Query: 924  EGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLS 983
            EG ++L+ +EF L  +L    SQVM+    K++ + ++  EE+ + +L GD IRLQ VL+
Sbjct: 958  EGCLDLEMKEFSLNEVLTTSTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLA 1017

Query: 984  DFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGR 1043
            DF+   V   PS  G + +        +  +    +++ RLTH G GIP  L+  M+ G 
Sbjct: 1018 DFMLMSVNFTPS-GGQLTVTASLRKDQLGRSVHLAYLEIRLTHTGAGIPEFLLNQMF-GT 1075

Query: 1044 NQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             +  + EGL L +SRKL+ +MNG V+Y+R+  K  F+I  EL
Sbjct: 1076 EEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAEL 1117


>gi|240119379|dbj|BAH79238.1| phytochrome A [Cardamine nipponica]
          Length = 1122

 Score = 1039 bits (2687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1122 (47%), Positives = 733/1122 (65%), Gaps = 67/1122 (5%)

Query: 21   PFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPP--EGVP- 76
            P +SS+   +  +  + II     DA L A+FE+S   G SF+YS SV ++ P  E  P 
Sbjct: 6    PSQSSEGSRRSRHSAR-IIAQTTVDAKLHADFEES---GSSFDYSTSVRVTGPVVENQPP 61

Query: 77   --EEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFE 130
              ++  T YL  IQ+G LIQPFGC+LA++E TF++I YSEN  E+L + S +     +  
Sbjct: 62   RSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMASHAVPSVGEHP 121

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
            + G IG D R+LFT PS ++L KA    ++SLLNPILVH  + +  KPFYAI+HR+   I
Sbjct: 122  VLG-IGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCKTSA--KPFYAIVHRVTGSI 178

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            ++D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR
Sbjct: 179  IVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDR 238

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+DDHGEVVSE+ +  +EPYLG+H+PA DIPQAARFLF +N+VRMI DC+A   
Sbjct: 239  VMAYKFHEDDHGEVVSEVTKPGMEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHA 298

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------- 360
             V+Q K+L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D           
Sbjct: 299  RVLQDKKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTQ 358

Query: 361  ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                 +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ 
Sbjct: 359  PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQT 418

Query: 417  LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
            LLCDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G TP+E  L++IA WL   
Sbjct: 419  LLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSEFHLQEIASWLCEY 478

Query: 477  HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
            H D TGLSTDSL +AG+P A  LG +VCGMA  RI+ KD +FWFRSHTA EV+WGGAKH 
Sbjct: 479  HTDSTGLSTDSLHDAGFPKALALGDSVCGMAAVRISLKDVIFWFRSHTAGEVRWGGAKHD 538

Query: 537  PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKV 596
            P+ +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +  
Sbjct: 539  PDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESTDVNTK 598

Query: 597  QGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPAS 656
              +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  
Sbjct: 599  IIHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVD 658

Query: 657  EAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACT 716
            EA+GK L+  +V + S   V+ ++  AL G E++NV+ +++          + ++VNAC 
Sbjct: 659  EAIGKHLL-TLVEDSSVEIVKRMLENALEGNEEQNVQFEIKTHLSMADAGPISLVVNACA 717

Query: 717  SRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776
            SRD   N+ GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+E
Sbjct: 718  SRDLHENMVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTE 777

Query: 777  WNAAMEKVTGWMRHEVI---------------------------------GITGQGTENF 803
            WN AM K+TG  R EVI                                  +T Q +E  
Sbjct: 778  WNPAMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFLNLGIVLNSAVTSQESEKV 837

Query: 804  PFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKI 863
             F FF R G++VE  L  S++ D EG V G FCF+Q+   +LQ AL  Q L +     ++
Sbjct: 838  SFAFFTRGGKYVECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTALKRL 897

Query: 864  KELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIE 923
            K LAYI+++++NPL+GI F  K++E + +   QRQ L TS  C+ Q+  ++D  DL  I 
Sbjct: 898  KALAYIKRQIRNPLSGIMFTRKMMEGTELGPEQRQILHTSALCQEQLSKVLDDSDLESII 957

Query: 924  EGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLS 983
            EG ++L+ +EF L  +L    SQVM+    K++ + ++  EE+ + +L GD IRLQ VL+
Sbjct: 958  EGCLDLEMKEFSLNEVLTTSTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLA 1017

Query: 984  DFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGR 1043
            DF+   V   PS  G + +        +  +    +++ RLTH G GIP  L+  M+ G 
Sbjct: 1018 DFMLMSVNFTPS-GGQLTVTASLRKDQLGRSVHLAYLEIRLTHTGAGIPEFLLNQMF-GT 1075

Query: 1044 NQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             +  + EGL L +SRKL+ +MNG V+Y+R+  K  F+I  EL
Sbjct: 1076 EEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAEL 1117


>gi|37779206|gb|AAO86645.1| PHYA4 photoreceptor [Stellaria longipes]
          Length = 1122

 Score = 1039 bits (2686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/1103 (48%), Positives = 723/1103 (65%), Gaps = 64/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGV-----PEEQITAYLSKIQRGGL 92
            II     DA L AEFE+S      F+YS SV     GV      ++  ++YL +IQ+G  
Sbjct: 22   IIAQTIQDAKLHAEFEES---SNEFDYSSSVRGSTSGVNQLPKSDKVTSSYLLQIQKGKF 78

Query: 93   IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
            IQ FGC+LA+++ TFR+I +SEN  EML + S +     D  + G IG + RT+FT PS 
Sbjct: 79   IQLFGCLLALDDKTFRVIAFSENAPEMLTMVSHAVPSVGDLPVIG-IGTNIRTIFTGPSA 137

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            ++L KA    ++SLLNPILVH  +    KPFYAI+HR+   +VID EP K  +  ++ AG
Sbjct: 138  SALQKALGFTDVSLLNPILVHCKNSG--KPFYAIVHRVTRSLVIDFEPVKPYEVPMTAAG 195

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AI+RLQ+LP G++  L DT+V++V +LTGYDRVM Y FHDDDHGEVVSE+
Sbjct: 196  ALQSYKLAAKAITRLQSLPSGNMDRLVDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEV 255

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             + +L+ YLG+H+PA DIPQAARFLF +N+VR+ICDC A  V V+Q ++L   L L  ST
Sbjct: 256  TKPNLDSYLGLHYPATDIPQAARFLFMKNKVRLICDCRAKNVRVVQDEKLSVDLTLCGST 315

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPR 375
            LR+PHGCH QYM NM SI SLVMAV++N +D               +LWGLVVCHHTSPR
Sbjct: 316  LRAPHGCHAQYMENMNSIGSLVMAVVVNDEDDEDGGSAPAQPHKRKRLWGLVVCHHTSPR 375

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
            ++PFPLRYACEFL Q F++ +  EL++  Q  EK ILRTQ LLCDML+RDAP  IVTQ+P
Sbjct: 376  FVPFPLRYACEFLAQVFAIHVNKELELENQFLEKKILRTQTLLCDMLMRDAPLGIVTQNP 435

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            ++MDLVKCDGAAL Y  + W +G+TPT+ QL+DIA WL  +H D TGLSTDSL +AGYPG
Sbjct: 436  NVMDLVKCDGAALLYNNKIWKLGITPTDYQLRDIAGWLSRDHTDSTGLSTDSLHDAGYPG 495

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            A  LG  VCGMA  RIT  D LFWFRSHTA EVKWGGAKH    KD+G KMHPR+SFKAF
Sbjct: 496  ARSLGDTVCGMAAVRITPNDMLFWFRSHTAAEVKWGGAKHETGEKDDGSKMHPRTSFKAF 555

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK RS PW+  E++AIHSLQ+++R++F+++E  + +    +++ +  ++ G+ EL +
Sbjct: 556  LEVVKRRSVPWKDYEMDAIHSLQLILRNAFKDVEASDLNTSVIHSKISDLQINGLRELEA 615

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETAT PI  VD+ G +NGWN K++ELTG+P +EA+GK  I  +  E S   
Sbjct: 616  VTSEMVRLIETATVPILAVDADGLVNGWNTKISELTGVPVAEAVGKH-IASLAEESSIDN 674

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+ ++  AL GEE KNV+ ++++ +       + ++VNAC S+D   NV GVC + QDIT
Sbjct: 675  VKRMLQLALQGEEKKNVQFEIKRHQSNPDSGPISLVVNACASKDVNGNVVGVCLIAQDIT 734

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
             +K +MDKF R++GDY+AIIQS NPLIPPIF +DE   CSEWN AM K+TGW R EVI  
Sbjct: 735  GQKTVMDKFTRIEGDYKAIIQSPNPLIPPIFGTDEFGWCSEWNPAMAKLTGWSREEVIDK 794

Query: 794  -------------------------------GITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            ++GQ T+  P  FF R G+++E  L  +
Sbjct: 795  MLLGEVFGTHKSCCRLKNQEAFVNFGIILNGAMSGQNTDKLPIEFFTRFGKYIECLLCVN 854

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            ++ D +G V G FCF+Q+   DLQ AL  Q L +     + K LAY+++++KNPL+GI F
Sbjct: 855  KKLDGDGAVTGVFCFLQLASHDLQHALHIQRLAEQAATKRAKALAYMKRQIKNPLSGIMF 914

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              K+L+ + + E+QRQ L+TS  C+ Q+  I+D  DL  I +G  EL+  EF + +IL A
Sbjct: 915  SGKILDGTEMGEDQRQVLQTSIRCQGQLNKILDDSDLDSIIDGYCELEMVEFTVQDILVA 974

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
             +SQVM    +K + + ++  E     +L GD +RLQ +L+DFL   V    SP G + +
Sbjct: 975  SISQVMAKSSEKGIQMSNNCTEHGFKETLYGDSLRLQQILADFLSISVNFT-SPGGHIGV 1033

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
             V      I ++ Q  +++FR+ H G GI   L+ +M+  R    + +G+ L +SRKL+ 
Sbjct: 1034 TVRLTKDKIGESVQLANLEFRIMHTGGGISEELLSEMFESRGN-ASEDGISLLISRKLVK 1092

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
            +MNG ++Y+R    C F+I +EL
Sbjct: 1093 LMNGDIQYLRSAGTCTFIIYVEL 1115


>gi|16421|emb|CAA35221.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1122

 Score = 1038 bits (2685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1122 (47%), Positives = 734/1122 (65%), Gaps = 67/1122 (5%)

Query: 21   PFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPP--EGVP- 76
            P +SS+   +  +  + II     DA L A+FE+S   G SF+YS SV ++ P  E  P 
Sbjct: 6    PTQSSEGSRRSRHSAR-IIAQTTVDAKLHADFEES---GSSFDYSTSVRVTGPVVENQPP 61

Query: 77   --EEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFE 130
              ++  T YL  IQ+G LIQPFGC+LA++E TF++I YSEN  E+L + S +     +  
Sbjct: 62   RSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENASELLTMASHAVPSVGEHP 121

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
            + G IG D R+LFT PS ++L KA    ++SLLNPILVH   R+  KPFYAI+HR+   I
Sbjct: 122  VLG-IGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHC--RTSAKPFYAIIHRVTGSI 178

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            +ID EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR
Sbjct: 179  IIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDR 238

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+DDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A   
Sbjct: 239  VMAYKFHEDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHA 298

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------- 360
             V+Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D           
Sbjct: 299  RVLQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDATTQ 358

Query: 361  ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                 +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ 
Sbjct: 359  PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELDNQMVEKNILRTQT 418

Query: 417  LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
            LLCDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G TP+E  L++IA WL   
Sbjct: 419  LLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSEFHLQEIASWLCEY 478

Query: 477  HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
            H D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH 
Sbjct: 479  HMDSTGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHD 538

Query: 537  PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKV 596
            P+ +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +  
Sbjct: 539  PDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSETTDVNTK 598

Query: 597  QGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPAS 656
               ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGL   
Sbjct: 599  VIYSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLSVD 658

Query: 657  EAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACT 716
            EA+GK  +  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC 
Sbjct: 659  EAIGKHFL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACA 717

Query: 717  SRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776
            SRD   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+E
Sbjct: 718  SRDLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTE 777

Query: 777  WNAAMEKVTGWMRHEVI---------------------------------GITGQGTENF 803
            WN AM K+TG  R EVI                                  +T Q  +  
Sbjct: 778  WNPAMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFVNLGIVLNNAVTSQDPDKV 837

Query: 804  PFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKI 863
             F FF R G++VE  L  S++ D +G V G FCF+Q+   +LQ AL  Q L +     ++
Sbjct: 838  SFAFFTRGGKYVECLLCVSKKLDRKGVVTGVFCFLQLASHELQQALHVQRLAERTAVKRL 897

Query: 864  KELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIE 923
            K LAYI+++++NPL+GI F  K++E + +   QR+ L+TS  C++Q+  I+D  DL  I 
Sbjct: 898  KALAYIKRQIRNPLSGIMFTRKMIEGTELGPEQRRILQTSALCQKQLSKILDDSDLESII 957

Query: 924  EGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLS 983
            EG ++L+ +EF L  +L A  SQVM+    K++ + ++  EE+ + +L GD IRLQ VL+
Sbjct: 958  EGCLDLEMKEFTLNEVLTASTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLA 1017

Query: 984  DFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGR 1043
            DF+   V   PS  G + +        +  +    +++ RLTH G GIP  L+  M+ G 
Sbjct: 1018 DFMLMAVNFTPS-GGQLTVSASLRKDQLGRSVHLANLEIRLTHTGAGIPEFLLNQMF-GT 1075

Query: 1044 NQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             +  + EGL L +SRKL+ +MNG V+Y+R+  K  F+I  EL
Sbjct: 1076 EEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAEL 1117


>gi|156753023|gb|ABU94257.1| phytochrome P [Pinus sylvestris]
 gi|156753027|gb|ABU94259.1| phytochrome P [Pinus sylvestris]
 gi|156753029|gb|ABU94260.1| phytochrome P [Pinus sylvestris]
          Length = 736

 Score = 1037 bits (2681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/727 (69%), Positives = 583/727 (80%), Gaps = 44/727 (6%)

Query: 135 IGIDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVID 193
           IG D RTLFT  S  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID
Sbjct: 14  IGTDVRTLFTAASAHSLEKAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVID 70

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD  +S AGAVQSQKLAV AISRLQ+LP GD+GLLCDTVVE+V++LTGYDRVM+
Sbjct: 71  LEPLRTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDVGLLCDTVVENVRELTGYDRVMV 130

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 131 YKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVI 190

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLW 364
           QS+EL QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D         SMKLW
Sbjct: 191 QSEELMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDDEGGGSGRNSMKLW 250

Query: 365 GLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLR 424
           GLVVCHHTSPR +PFPLRYACEFL+QA  LQL MELQ+A QL EK+ILRTQ LLCDMLLR
Sbjct: 251 GLVVCHHTSPRAVPFPLRYACEFLMQALGLQLNMELQLAAQLTEKHILRTQTLLCDMLLR 310

Query: 425 DAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLS 484
           DAP  IVTQSPSIMDLVKCDGAALYYGG CWL+GVTPTE+Q+KDIA WLL +HGD TGLS
Sbjct: 311 DAPMGIVTQSPSIMDLVKCDGAALYYGGMCWLLGVTPTEAQIKDIADWLLEHHGDSTGLS 370

Query: 485 TDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGG 544
           TDSLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+  
Sbjct: 371 TDSLADAGYPGAASLGDAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDAR 430

Query: 545 KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNG 604
           +MHPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K   +++ N 
Sbjct: 431 RMHPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLND 489

Query: 605 SKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLI 664
            ++QG+DELSSVA EMVRLIETATAPI  VD +G +NGWNAKVAELTGLP  EAMG SL+
Sbjct: 490 LRLQGIDELSSVASEMVRLIETATAPILAVDYNGLVNGWNAKVAELTGLPVGEAMGMSLV 549

Query: 665 DEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNV 724
            ++V E+S   VE ++  AL GEE+KNVE+ L+ F  QK+   V ++VNAC+SRD+ +N+
Sbjct: 550 QDLVFEQSVERVEKMLHNALRGEEEKNVEMMLKTFGPQKEKEAVILVVNACSSRDFTDNI 609

Query: 725 KGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKV 784
            GVCFVGQD+T +KV+MDKFIR+QGDY +I+QS NPLIPPIFASDE ACCSEWNAAMEKV
Sbjct: 610 VGVCFVGQDVTSQKVVMDKFIRIQGDYRSIVQSPNPLIPPIFASDEYACCSEWNAAMEKV 669

Query: 785 TGWMRHEVIG------------------------------ITGQGTENFPFGFFNRQGQF 814
           TGW   EVIG                              I GQ  E FPF FF++QG++
Sbjct: 670 TGWTHDEVIGKMLVGEIFGGCCRLKGQDAVTKFTIVLHSAIDGQEIEKFPFAFFDKQGKY 729

Query: 815 VEVALTA 821
           VE  LTA
Sbjct: 730 VEALLTA 736


>gi|343408423|gb|AEM06737.1| phytochrome C [Arabidopsis thaliana]
 gi|343408443|gb|AEM06747.1| phytochrome C [Arabidopsis thaliana]
          Length = 1111

 Score = 1036 bits (2680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/1094 (48%), Positives = 726/1094 (66%), Gaps = 64/1094 (5%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTDQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM-NGRVRYV 1071
               + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +M  G +RY+
Sbjct: 1035 KRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLMERGTLRYL 1094

Query: 1072 RENSKCYFVIDLEL 1085
            RE+    FVI  E 
Sbjct: 1095 RESEMSAFVILTEF 1108


>gi|343408417|gb|AEM06734.1| phytochrome C [Arabidopsis thaliana]
 gi|343408419|gb|AEM06735.1| phytochrome C [Arabidopsis thaliana]
 gi|343408425|gb|AEM06738.1| phytochrome C [Arabidopsis thaliana]
 gi|343408429|gb|AEM06740.1| phytochrome C [Arabidopsis thaliana]
 gi|343408431|gb|AEM06741.1| phytochrome C [Arabidopsis thaliana]
 gi|343408435|gb|AEM06743.1| phytochrome C [Arabidopsis thaliana]
 gi|343408437|gb|AEM06744.1| phytochrome C [Arabidopsis thaliana]
 gi|343408445|gb|AEM06748.1| phytochrome C [Arabidopsis thaliana]
          Length = 1111

 Score = 1036 bits (2680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1094 (48%), Positives = 726/1094 (66%), Gaps = 64/1094 (5%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS SV ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASVNLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM-NGRVRYV 1071
               + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +M  G +RY+
Sbjct: 1035 KRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLMERGTLRYL 1094

Query: 1072 RENSKCYFVIDLEL 1085
            RE+    FVI  E 
Sbjct: 1095 RESEMSAFVILTEF 1108


>gi|240119425|dbj|BAH79261.1| phytochrome C [Cardamine resedifolia]
          Length = 1112

 Score = 1036 bits (2679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/1095 (47%), Positives = 725/1095 (66%), Gaps = 66/1095 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS SV ++ P     +P   ++ YL  IQRG LIQPFGC++
Sbjct: 27   DATLHRNFEES---ERLFDYSASVNLNMPSSSFDIPSSAVSTYLQNIQRGMLIQPFGCLI 83

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAAA 156
             V+E   ++I +SEN  EML L   +    E  E    IG D ++LF  P  ++L KA  
Sbjct: 84   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALS-IGTDVKSLFQSPGSSALQKAID 142

Query: 157  SREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLA 216
              EIS+LNPI +H  S S  KPFYAILHRI+ G++IDLEP    +  ++ AGA++S KLA
Sbjct: 143  FGEISILNPITLHCMSSS--KPFYAILHRIEEGLLIDLEPVSPDEVPVTAAGALRSYKLA 200

Query: 217  VSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPY 276
              +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FHDD HGEV++E  R DLEPY
Sbjct: 201  AKSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHDDGHGEVIAECCREDLEPY 260

Query: 277  LGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCH 336
            LG+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH
Sbjct: 261  LGLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCH 320

Query: 337  LQYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACE 386
             QYM+NMGS+ASLVM+V IN +DS            LWGLVVCHH SPR++PFPLRYACE
Sbjct: 321  AQYMSNMGSVASLVMSVTINCRDSDDMNRDLQTGRSLWGLVVCHHASPRFVPFPLRYACE 380

Query: 387  FLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGA 446
            F++Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  I+TQSP+IMDLV+CDGA
Sbjct: 381  FMIQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIITQSPNIMDLVECDGA 440

Query: 447  ALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGM 506
            AL+Y  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGM
Sbjct: 441  ALFYRDKLWSLGVTPTETQIRDLIHWVLKSHGGNTGFTTESLMESGYPDASVLGESICGM 500

Query: 507  ATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPW 566
            A   IT KDFLFWFRS  AKE+KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW
Sbjct: 501  AAVYITEKDFLFWFRSSNAKEIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSMPW 559

Query: 567  EVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIET 626
            +  E++AI+SLQ++++ S Q    E  SK   N     +++Q VDEL  +  EMVRLI+T
Sbjct: 560  DDMEMDAINSLQLIIKGSLQ----EEHSKTVENVPFVDNRVQKVDELCVIVNEMVRLIDT 615

Query: 627  ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
            A  PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V N++  AL G
Sbjct: 616  AAVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSAETVTNMLALALKG 674

Query: 687  EEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIR 746
             E++  E+++R F  +++ S +Y++VN C SRD KNNV GVCF+GQD+T +K L + + R
Sbjct: 675  SEERGAEIRIRAFGPKRKSSSIYLVVNTCCSRDRKNNVLGVCFIGQDVTGQKTLTENYSR 734

Query: 747  LQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------- 793
            +QGDY  I+ S + LIPPIF ++E+  CSEWN AM+K++G  R E +             
Sbjct: 735  MQGDYARIMSSHSTLIPPIFMTNEDGLCSEWNNAMQKLSGIKREEAVNKMLLGEVFTSNE 794

Query: 794  ------------------GITGQGTENFP---FGFFNRQGQFVEVALTASRRTDAEGKVI 832
                                 G G +N     FGF++R G F+E  L+A++RTD EGKV 
Sbjct: 795  YGCPVKDHDTLTKMRIALNAVGSGQKNVEKLFFGFYHRDGSFIEALLSANKRTDIEGKVT 854

Query: 833  GCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSI 892
            G  CF+Q+  P+LQ AL+ Q + +  I   + +LAY+RQEVKNP   I F+   L +S +
Sbjct: 855  GVLCFLQVPSPELQYALQVQRVSEQAIACALDKLAYLRQEVKNPEKAISFLQNSLNTSGL 914

Query: 893  SENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLR 952
            SE+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QV  L  
Sbjct: 915  SEDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELGCSEFNLEESLEAVVKQVTELSI 974

Query: 953  DKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLI 1011
            ++ + ++ D P EI ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I
Sbjct: 975  ERKVQIICDYPIEISSMRLYGDNLRLQQILSETLLSSLRFTPAMKGLCVSFKVIARVEAI 1034

Query: 1012 KDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL-IMMNGRVRY 1070
                + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +M  G +RY
Sbjct: 1035 GKRMKRVELEFRVIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLMERGTLRY 1094

Query: 1071 VRENSKCYFVIDLEL 1085
            +RE+    FVI  E 
Sbjct: 1095 LRESEMSAFVILTEF 1109


>gi|240119389|dbj|BAH79243.1| phytochrome A [Cardamine resedifolia]
          Length = 1122

 Score = 1036 bits (2679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/1122 (47%), Positives = 733/1122 (65%), Gaps = 67/1122 (5%)

Query: 21   PFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPP--EGVP- 76
            P +SS+   +  +  + II     DA L A+FE+S   G SF+YS SV ++ P  E  P 
Sbjct: 6    PSQSSEGSRRSRHSAR-IIAQTTVDAKLHADFEES---GSSFDYSTSVRVTGPVVENQPP 61

Query: 77   --EEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFE 130
              ++  T YL  IQ+G LIQPFGC+LA++E TF++I YSEN  E+L + S +     +  
Sbjct: 62   RSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENAPELLTMASHAVPSVGEHP 121

Query: 131  LNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
            + G IG D R+LFT PS ++L KA    ++SLLNPILVH  + +  KPFYAI+HR+   I
Sbjct: 122  VLG-IGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCKTSA--KPFYAIVHRVTGSI 178

Query: 191  VIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDR 250
            ++D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGY+R
Sbjct: 179  IVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYER 238

Query: 251  VMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310
            VM Y FH+DDHGEVVSE+ +  +EPYLG+H+PA DIPQAARFLF +N+VRMI DC+A   
Sbjct: 239  VMAYKFHEDDHGEVVSEVTKPGMEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHA 298

Query: 311  MVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------- 360
             V+Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D           
Sbjct: 299  RVLQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTQ 358

Query: 361  ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                 +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ 
Sbjct: 359  PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQT 418

Query: 417  LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
            LLCDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G TP+E  L++IA WL   
Sbjct: 419  LLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSEFHLQEIASWLCEY 478

Query: 477  HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
            H D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH 
Sbjct: 479  HTDSTGLSTDSLHDAGFPKALALGDSVCGMAAVRISSKDVIFWFRSHTAGEVRWGGAKHD 538

Query: 537  PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKV 596
            P+ +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +  
Sbjct: 539  PDDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESTDVNTK 598

Query: 597  QGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPAS 656
              +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  
Sbjct: 599  IIHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVD 658

Query: 657  EAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACT 716
            EA+GK L+  +V + S   V  ++  AL G E++NV+ +++          + ++VNAC 
Sbjct: 659  EAIGKHLLT-LVEDSSVEIVRRMLENALEGNEEQNVQFEIKTHLSMADTGPISLVVNACA 717

Query: 717  SRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776
            SRD   N+ GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+E
Sbjct: 718  SRDLHENMVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTE 777

Query: 777  WNAAMEKVTGWMRHEVI---------------------------------GITGQGTENF 803
            WN AM K+TG  R EVI                                  +T Q +E  
Sbjct: 778  WNPAMSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFLNLGIVLNSAVTSQESEKV 837

Query: 804  PFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKI 863
             F FF R G++VE  L  S++ D EG V G FCF+Q+   +LQ AL  Q L +     ++
Sbjct: 838  SFAFFTRGGKYVECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTALKRL 897

Query: 864  KELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIE 923
            K LAYI+++++NPL+GI F  K++E + +   QRQ L TS  C++Q+  ++D  DL  I 
Sbjct: 898  KALAYIKRQIRNPLSGIMFTRKMMEGTELGPEQRQILHTSALCQKQLSKVLDDSDLESII 957

Query: 924  EGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLS 983
            EG ++L+ +EF L  +L A  SQVM+    K++ + ++  EE+ + +L GD I LQ VL+
Sbjct: 958  EGCLDLEMKEFSLNEVLTASTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSITLQQVLA 1017

Query: 984  DFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGR 1043
            DF+   V   PS  G + +        +  +    +++ RL H G GIP  L+  M+ G 
Sbjct: 1018 DFMLMSVNFTPS-GGQLTVTASLRKDQLGRSVHLAYLEIRLMHTGAGIPEFLLNQMF-GT 1075

Query: 1044 NQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
             +  + EGL L +SRKL+ +MNG V+Y+R+  K  F+I  EL
Sbjct: 1076 EEDVSEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAEL 1117


>gi|343408411|gb|AEM06731.1| phytochrome C [Arabidopsis thaliana]
          Length = 1111

 Score = 1036 bits (2679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/1094 (48%), Positives = 726/1094 (66%), Gaps = 64/1094 (5%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM-NGRVRYV 1071
               + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +M  G +RY+
Sbjct: 1035 KRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLMERGTLRYL 1094

Query: 1072 RENSKCYFVIDLEL 1085
            RE+    FVI  E 
Sbjct: 1095 RESEMSAFVILTEF 1108


>gi|343408413|gb|AEM06732.1| phytochrome C [Arabidopsis thaliana]
          Length = 1111

 Score = 1035 bits (2677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1094 (48%), Positives = 726/1094 (66%), Gaps = 64/1094 (5%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS SV ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASVNLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPIDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL-IMMNGRVRYV 1071
               + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +M  G +RY+
Sbjct: 1035 KRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLMERGTLRYL 1094

Query: 1072 RENSKCYFVIDLEL 1085
            RE+    FVI  E 
Sbjct: 1095 RESEMSAFVILTEF 1108


>gi|37623877|gb|AAQ95581.1| phytochrome c [Arabidopsis thaliana]
          Length = 1111

 Score = 1035 bits (2677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/1094 (48%), Positives = 726/1094 (66%), Gaps = 64/1094 (5%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELGCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM-NGRVRYV 1071
               + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +M  G +RY+
Sbjct: 1035 KRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLMERGTLRYL 1094

Query: 1072 RENSKCYFVIDLEL 1085
            RE+    FVI  E 
Sbjct: 1095 RESEMSAFVILTEF 1108


>gi|15239211|ref|NP_198433.1| phytochrome C [Arabidopsis thaliana]
 gi|130192|sp|P14714.1|PHYC_ARATH RecName: Full=Phytochrome C
 gi|16425|emb|CAA35223.1| unnamed protein product [Arabidopsis thaliana]
 gi|10176703|dbj|BAB09925.1| phytochrome C [Arabidopsis thaliana]
 gi|332006638|gb|AED94021.1| phytochrome C [Arabidopsis thaliana]
 gi|343408415|gb|AEM06733.1| phytochrome C [Arabidopsis thaliana]
 gi|343408427|gb|AEM06739.1| phytochrome C [Arabidopsis thaliana]
          Length = 1111

 Score = 1035 bits (2676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1094 (47%), Positives = 725/1094 (66%), Gaps = 64/1094 (5%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALEKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY    W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDNLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               I+ KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYISEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKTLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            +GDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  KGDYARIMWSPSTLIPPIFITNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   E   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIEKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPALRGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL-IMMNGRVRYV 1071
               + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +M  G +RY+
Sbjct: 1035 KRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLMERGTLRYL 1094

Query: 1072 RENSKCYFVIDLEL 1085
            RE+    FVI  E 
Sbjct: 1095 RESEMSAFVILTEF 1108


>gi|371940244|dbj|BAL45559.1| Phytochrome A2 [Glycine soja]
 gi|371940246|dbj|BAL45560.1| Phytochrome A2 [Glycine soja]
 gi|371940248|dbj|BAL45561.1| Phytochrome A2 [Glycine soja]
 gi|371940250|dbj|BAL45562.1| Phytochrome A2 [Glycine soja]
 gi|371940252|dbj|BAL45563.1| Phytochrome A2 [Glycine soja]
 gi|371940256|dbj|BAL45565.1| Phytochrome A2 [Glycine soja]
 gi|371940258|dbj|BAL45566.1| Phytochrome A2 [Glycine soja]
 gi|371940262|dbj|BAL45568.1| Phytochrome A2 [Glycine soja]
          Length = 1123

 Score = 1035 bits (2676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1096 (47%), Positives = 724/1096 (66%), Gaps = 60/1096 (5%)

Query: 43   NADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ----ITAYLSKIQRGGLIQPFGC 98
              DA L A FE+S +S    +  R +    +GV + +     TAYL  +Q+G +IQPFGC
Sbjct: 27   TVDAKLHATFEESGSSFDYSSSVR-ISGTADGVNQPRHDKVTTAYLHHMQKGKMIQPFGC 85

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
            +LA++E T ++I YSEN  EML + S +     D    G IG D +TLFT PS ++L KA
Sbjct: 86   LLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALG-IGTDIKTLFTAPSASALQKA 144

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
                E+SLLNP+L+H  +    KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS K
Sbjct: 145  LGFAEVSLLNPVLIHCKTSG--KPFYAIIHRVTGSMIIDFEPVKPYEVPMTAAGALQSYK 202

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FH+DDHGEV++EI +  LE
Sbjct: 203  LAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLE 262

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PYLG+H+PA DIPQA+RFLF +N+VRMI DCHA  V V+Q ++L   L L  STLR+PH 
Sbjct: 263  PYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVRVLQDEKLPFDLTLCGSTLRAPHS 322

Query: 335  CHLQYMTNMGSIASLVMAVIINSKDS------------MKLWGLVVCHHTSPRYIPFPLR 382
            CH QYM NM SIASLVMAV++N  +              +LWGLVVCH+T+PR++PFPLR
Sbjct: 323  CHAQYMANMDSIASLVMAVVVNDNEEDGDTDAIQPQKRKRLWGLVVCHNTTPRFVPFPLR 382

Query: 383  YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
            YACEFL Q F++ +  E+++  Q+ EKNILRTQ LLCD+++RDAP  IV++SP+IMDLVK
Sbjct: 383  YACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDLVMRDAPLGIVSESPNIMDLVK 442

Query: 443  CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
            CDGAAL Y  + W +GVTP+ESQ+++IA+WL   H D TG STDSL++AG+P A  LG  
Sbjct: 443  CDGAALIYKNKVWRLGVTPSESQIREIAFWLSEYHMDSTGFSTDSLSDAGFPSALSLGDV 502

Query: 503  VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
            VCGMA  R+T+KD +FWFRSHTA E++WGGAKH    KD+G +MHPRSSFK FL+VVK R
Sbjct: 503  VCGMAAVRVTAKDVVFWFRSHTAAEIRWGGAKHEAGEKDDGRRMHPRSSFKVFLDVVKAR 562

Query: 563  SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVR 622
            S PW+  EI+A+HSLQ+++R++F++ E  + +    NT+ +  K++G+ EL +V  E+VR
Sbjct: 563  SLPWKEYEIDAMHSLQLILRNAFKDTESMDLNTKAINTRLSDLKIEGMQELEAVTSEIVR 622

Query: 623  LIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICR 682
            LIETAT PI  VD  G +NGWN K+AELTGLP  EAMGK L+  +V + S   V+ ++  
Sbjct: 623  LIETATVPILAVDVDGLVNGWNIKIAELTGLPVGEAMGKHLLT-LVEDSSTDRVKKMLNL 681

Query: 683  ALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742
            ALLGEE+KNV+ +++    +     + ++VNAC SRD ++NV GVCFV  DIT +K +MD
Sbjct: 682  ALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMD 741

Query: 743  KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI--------- 793
            KF R++GDY+AI+Q+ NPLIPPIF +DE   C EWN AM K+TGW R EV+         
Sbjct: 742  KFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGELF 801

Query: 794  ------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEG 829
                                     +TG  TE  PFGFF R G++VE  L+ S++ D EG
Sbjct: 802  GTHMAACRLKNQEAFVNLGVVLNKAMTGLETEKVPFGFFARNGKYVECLLSVSKKLDVEG 861

Query: 830  KVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLES 889
             V G FCF+Q+  P+LQ AL  Q L +     ++  L+Y++++++NPL GI F  K+LE 
Sbjct: 862  LVTGVFCFLQLASPELQQALHIQRLSEQTALKRLNALSYMKRQIRNPLCGIIFSRKMLEG 921

Query: 890  SSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMV 949
            +++   Q+Q L TS  C++Q+  I+D  DL  I +G ++L+  EF L  +L   +SQVM 
Sbjct: 922  TALGTEQKQLLRTSAQCQQQLSKILDDSDLDSIIDGYLDLEMAEFTLHEVLVTSLSQVMT 981

Query: 950  LLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLK 1009
                K++ +++D+ E+I   +L GD +RLQ VL+DFL   +   P+    V    L   +
Sbjct: 982  KSNGKSIRIVNDVAEQIVMETLYGDSLRLQQVLADFLLISINFTPNGGQVVVAGTLTKEQ 1041

Query: 1010 LIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVR 1069
            L K     V ++  +TH G G+P  L+  M+ G N   + EG+ L +SRKLL +MNG VR
Sbjct: 1042 LGKSV-HLVKLELSITHGGSGVPEALLNQMF-GNNGLESEEGISLLISRKLLKLMNGDVR 1099

Query: 1070 YVRENSKCYFVIDLEL 1085
            Y+RE  K  F++  EL
Sbjct: 1100 YLREAGKSAFILSAEL 1115


>gi|240119419|dbj|BAH79258.1| phytochrome C [Cardamine nipponica]
          Length = 1112

 Score = 1035 bits (2676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1102 (47%), Positives = 726/1102 (65%), Gaps = 66/1102 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLI 93
            +   +  DA L   FE+S    + F+YS SV ++ P     +P   ++ YL KIQRG LI
Sbjct: 20   VTSQFLVDATLHRNFEES---ERLFDYSASVNLNMPSSSFDIPSSAVSTYLQKIQRGMLI 76

Query: 94   QPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGA 149
            QPFGC++ V+E   ++I +SEN  EML L   +    E  E    IG D ++LF  P  +
Sbjct: 77   QPFGCLIVVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALS-IGTDVKSLFQSPGSS 135

Query: 150  SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
            +L KA    EIS+LNPI +H  S S  KPFYAILHRI+ G+VIDLEP    +  ++ AGA
Sbjct: 136  ALQKAIDFGEISILNPITLHCMSSS--KPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGA 193

Query: 210  VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
            ++S KLA  +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FHDD HGEV++E  
Sbjct: 194  LRSYKLAAKSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHDDGHGEVIAECC 253

Query: 270  RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            R DLEPYLG+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STL
Sbjct: 254  REDLEPYLGLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTL 313

Query: 330  RSPHGCHLQYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPF 379
            R+PHGCH QYM+NMGS+ASLVM+V IN +DS            LWGLVVCHH SPR++PF
Sbjct: 314  RAPHGCHAQYMSNMGSVASLVMSVTINCRDSDDMNRDLQTGRSLWGLVVCHHASPRFVPF 373

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEF++Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  I+TQSP+IMD
Sbjct: 374  PLRYACEFMIQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIITQSPNIMD 433

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAAL+Y  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++L
Sbjct: 434  LVKCDGAALFYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVL 493

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G+++CGMA   IT KDFLFWFRS  AKE+KWGGA+H P  +D G +MHPRSSFKAF+E+V
Sbjct: 494  GESICGMAAVYITEKDFLFWFRSSNAKEIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIV 552

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACE 619
            + +S PW+  E++AI+SLQ++++ S Q    E  SK   N     +++Q VDEL  +  E
Sbjct: 553  RWKSMPWDDMEMDAINSLQLIIKGSLQ----EEHSKTVENVPFVDNRVQKVDELCVIVNE 608

Query: 620  MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679
            MVRLI+TA  PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V N+
Sbjct: 609  MVRLIDTAAVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSAETVTNM 667

Query: 680  ICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKV 739
            +  AL G E++  E+++R F  +++ S + ++VN C SRD KNNV GVCF+GQD+T +K 
Sbjct: 668  LALALKGSEERGAEIRIRAFGPKRKSSPIDLVVNTCCSRDRKNNVLGVCFIGQDVTGQKT 727

Query: 740  LMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------ 793
            L + + R+QGDY  I+ S + LIPPIF ++E+  CSEWN AM+K++G  R E +      
Sbjct: 728  LTENYSRMQGDYARIMSSHSTLIPPIFMTNEDGLCSEWNNAMQKLSGIKREEAVNKMLLG 787

Query: 794  -------------------------GITGQGTENFP---FGFFNRQGQFVEVALTASRRT 825
                                        G G +N     FGF++R G F+E  L+A++RT
Sbjct: 788  EVFTSNEYGCPVKDHDTLTKLRIALNAVGSGQKNVEKLFFGFYHRDGSFIEALLSANKRT 847

Query: 826  DAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHK 885
            D EGKV G  CF+Q+  P+LQ AL+ Q + +  I   + +LAY+RQEVKNP   I F+  
Sbjct: 848  DIEGKVTGVLCFLQVPSPELQYALQVQRVSEQAIACALDKLAYLRQEVKNPEKAISFLQN 907

Query: 886  LLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVS 945
             L +S +SE+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV 
Sbjct: 908  SLHTSGLSEDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELGCSEFNLEESLEAVVK 967

Query: 946  QVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKV 1004
            QV  L  ++ + ++ D P EI ++ L GD +RLQ +LS+ L   +   P+  G  V  KV
Sbjct: 968  QVTELSIERKVQIICDYPIEISSMRLYGDNLRLQQILSETLLSSLHFTPAMKGLCVSFKV 1027

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL-IM 1063
            +  ++ I    + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +M
Sbjct: 1028 IARVEAIGKRMKRVELEFRVIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLM 1087

Query: 1064 MNGRVRYVRENSKCYFVIDLEL 1085
              G +RY+RE+    FVI  E 
Sbjct: 1088 ERGTLRYLRESEMSAFVILTEF 1109


>gi|37779204|gb|AAO86644.1| PHYA3 photoreceptor [Stellaria longipes]
          Length = 1123

 Score = 1035 bits (2675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1109 (48%), Positives = 726/1109 (65%), Gaps = 67/1109 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGV-----PEEQITAYLSKIQRGGL 92
            II     DA L AEFE+S      F+YS SV     GV      ++  ++YL +IQ+G  
Sbjct: 22   IIAQTIQDAKLHAEFEES---SNEFDYSSSVRGSTSGVNQLPQSDKVTSSYLLQIQKGKF 78

Query: 93   IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
            IQPFGC+LA+++ TFR+I +SEN  EML + S +     D  + G IG D RT+FT PS 
Sbjct: 79   IQPFGCLLALDDKTFRVIAFSENAPEMLTMVSHAVPSVGDLPVIG-IGTDIRTIFTDPSA 137

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            ++L KA    ++SLLNPILVH  +    KPFYAI+HR+   +VID EP K  +  ++ AG
Sbjct: 138  SALQKALGFTDVSLLNPILVHCKNSG--KPFYAIVHRVTRSLVIDFEPVKPYEVPMTAAG 195

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AI+RLQ+LP G++  L DT+V++V +LTGYDRVM Y FHDDDHGEVVSE+
Sbjct: 196  ALQSYKLAAKAITRLQSLPSGNMDRLVDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEV 255

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             + +L+ YLG+H+PA DIPQAARFLF +N+VR+ICDC A  V V+Q ++L   L L  ST
Sbjct: 256  TKPNLDSYLGLHYPATDIPQAARFLFMKNKVRLICDCRAKNVRVVQDEKLSVDLTLCGST 315

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPR 375
            LR+PHGCH QYM NM SI SLVMAV++N +D               +LWGLVVCHHTSPR
Sbjct: 316  LRAPHGCHAQYMENMNSIGSLVMAVVVNDEDDEDGGSAPAQPHKRKRLWGLVVCHHTSPR 375

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
            ++PFPLRYACEFL Q F++ +  EL++  Q  EK ILRTQ LLCDML+RDAP  IVTQ+P
Sbjct: 376  FVPFPLRYACEFLAQVFAIHVNKELELESQFLEKKILRTQTLLCDMLMRDAPLGIVTQNP 435

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            ++MDLVKCDGAAL Y  + W +G++PT+ QL+DIA WL  +H D TGLSTDSL +AGYPG
Sbjct: 436  NVMDLVKCDGAALLYNNKIWKLGISPTDYQLRDIAGWLSRDHTDSTGLSTDSLHDAGYPG 495

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            A  LG  VCGMA  RIT  + LFWFRSHTA EVKWGGAKH    KD+G KMHPR+SFKAF
Sbjct: 496  ARSLGDTVCGMAAVRITLNNMLFWFRSHTAAEVKWGGAKHETGEKDDGSKMHPRTSFKAF 555

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK RS PW+  E++AIHSLQ+++R++F+++E  + +    +++ +  ++ G+ EL +
Sbjct: 556  LEVVKRRSVPWKDYEMDAIHSLQLILRNAFKDVEASDLNTSVIHSKISDLQINGLRELEA 615

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETAT PI  VD+ G +NGWN K+ ELTG+P +EA+GK  I  +  E S   
Sbjct: 616  VTSEMVRLIETATVPILAVDADGLVNGWNTKIFELTGVPVAEAVGKH-IASLAEESSIDN 674

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+ ++  AL GEE KNV+ ++++ +     S + ++VNAC S+D   NV GVC + QDIT
Sbjct: 675  VKRMLQLALQGEEKKNVQFEIKRHQSNPDSSPISLVVNACASKDVNGNVVGVCLITQDIT 734

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
             +K +MDKF R++GDY+AIIQS NPLIPPIF +DE   CSEWN AM K+TGW R EVI  
Sbjct: 735  GQKTVMDKFTRIEGDYKAIIQSPNPLIPPIFGTDEFGWCSEWNPAMAKLTGWSREEVIDK 794

Query: 794  -------------------------------GITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            ++GQ T+  P  FF R G+++E  L  +
Sbjct: 795  MLLGEVFGTQKSCCRLKNQEAFVNFGIILNGAMSGQNTDKLPIEFFTRFGKYIECLLCVN 854

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            ++ D +G V G FCF+Q+   DLQ AL  Q L +     + K LAY+++++KNPL+GI F
Sbjct: 855  KKLDGDGAVTGVFCFLQLASHDLQHALHIQRLAEQAATKRAKALAYMKRQIKNPLSGIMF 914

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              K+L+ + + E+QRQ L+TS  C+ Q+  I+D  DL  I +G  EL+  EF + +IL A
Sbjct: 915  SGKILDGTEMGEDQRQVLQTSIRCQGQLNKILDDSDLDSIIDGYCELEMVEFTVQDILVA 974

Query: 943  VVSQVMVLLRDKNLHLLHDIPEE--IKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWV 1000
               QVM    +K + + +D   E  +K  +L GD +RLQ +L+DFL   V   P+  G V
Sbjct: 975  STCQVMAKSNEKGIQIANDSTTEHGLKE-TLYGDSLRLQQILADFLWISVNFTPA-GGNV 1032

Query: 1001 EIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKL 1060
             IKV      I ++ Q  +++FR++H G GI   L+  M+  + +  + EG+ L +SRK+
Sbjct: 1033 GIKVRLTKDKIGESIQHANLEFRISHTGGGISEELLSQMFENQGE-VSEEGISLLVSRKI 1091

Query: 1061 LIMMNGRVRYVRENSKCYFVIDLELKTRG 1089
            + +MNG V+Y+R      F+I +EL   G
Sbjct: 1092 VKLMNGDVQYLRSAGSSTFIISVELAIAG 1120


>gi|576939|emb|CAA83549.1| phyC [Arabidopsis thaliana]
 gi|343408441|gb|AEM06746.1| phytochrome C [Arabidopsis thaliana]
 gi|385654208|gb|AFI61904.1| phytochrome C [Arabidopsis thaliana]
          Length = 1111

 Score = 1034 bits (2674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1094 (47%), Positives = 725/1094 (66%), Gaps = 64/1094 (5%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LT YDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTSYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL-IMMNGRVRYV 1071
               + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +M  G +RY+
Sbjct: 1035 KRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLMERGTLRYL 1094

Query: 1072 RENSKCYFVIDLEL 1085
            RE+    FVI  E 
Sbjct: 1095 RESEMSAFVILTEF 1108


>gi|343408439|gb|AEM06745.1| phytochrome C [Arabidopsis thaliana]
          Length = 1111

 Score = 1034 bits (2673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1094 (47%), Positives = 725/1094 (66%), Gaps = 64/1094 (5%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL S  +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSFGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL-IMMNGRVRYV 1071
               + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +M  G +RY+
Sbjct: 1035 KRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLMERGTLRYL 1094

Query: 1072 RENSKCYFVIDLEL 1085
            RE+    FVI  E 
Sbjct: 1095 RESEMSAFVILTEF 1108


>gi|190586161|gb|ACE79197.1| phytochrome A-3 [Glycine max]
          Length = 1122

 Score = 1034 bits (2673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1096 (47%), Positives = 724/1096 (66%), Gaps = 60/1096 (5%)

Query: 43   NADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ----ITAYLSKIQRGGLIQPFGC 98
              DA + A FE+S +S    +  R V    +GV + +     TAYL+ +QRG +IQPFGC
Sbjct: 26   TVDAKIHATFEESGSSFDYSSSVR-VSGTADGVNQPRSDKVTTAYLNHMQRGKIIQPFGC 84

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
            +LA++E T ++I YSEN  EML + S +     D    G IG D +TLFT PS ++L KA
Sbjct: 85   LLAIDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALG-IGTDIKTLFTAPSASALQKA 143

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
                E+ LLNP+L+H  +    KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS K
Sbjct: 144  LGFAEVLLLNPVLIHCKTSG--KPFYAIIHRVTGSMIIDFEPVKPYEVPMTAAGALQSYK 201

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FH+DDHGEV++EI +  LE
Sbjct: 202  LAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLE 261

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PYLG+H+PA DIPQA+RFLF +N+VRMI DCHA  V V+Q ++L   L L  STLR+PH 
Sbjct: 262  PYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVRVLQDEKLPFDLTLCGSTLRAPHS 321

Query: 335  CHLQYMTNMGSIASLVMAVIINSKDS------------MKLWGLVVCHHTSPRYIPFPLR 382
            CH QYM NM SIASLVMAV++N  +              +LWGLVVCH+T+PR++PFPLR
Sbjct: 322  CHAQYMANMDSIASLVMAVVVNDNEEDGDTDAIQPQKRKRLWGLVVCHNTTPRFVPFPLR 381

Query: 383  YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
            YACEFL Q F++ +  E+++  Q+ EKNILRTQ LLCD+++RDAP  IV++SP+IMDLVK
Sbjct: 382  YACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDLVMRDAPLGIVSESPNIMDLVK 441

Query: 443  CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
            CDGAAL Y  + W +GVTP+ESQ+++IA+WL   H D TG STDSL++AG+P A  LG  
Sbjct: 442  CDGAALIYKNKVWRLGVTPSESQIREIAFWLSEYHMDSTGFSTDSLSDAGFPSAPSLGDV 501

Query: 503  VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
            VCGMA  R+T+KD +FWFRSHTA E++WGGAKH    KD+G +MHPRSSFK FL+VVK R
Sbjct: 502  VCGMAAVRVTAKDVVFWFRSHTAAEIRWGGAKHEAGEKDDGRRMHPRSSFKVFLDVVKAR 561

Query: 563  SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVR 622
            S PW+  EI+A+HSLQ+++R++F++ E  + +    NT+ +  K++G+ EL +V  E+VR
Sbjct: 562  SLPWKEYEIDAMHSLQLILRNAFKDTESMDLNTKAINTRLSDLKIEGMQELEAVTSEIVR 621

Query: 623  LIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICR 682
            LIETAT PI  VD  G +NGWN K+AELTGLP  EAMGK L+  +V + S   V+ ++  
Sbjct: 622  LIETATVPILAVDVDGLVNGWNIKIAELTGLPVGEAMGKHLLT-LVEDSSTDRVKKMLNL 680

Query: 683  ALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742
            ALLGEE+KNV+ +++    +     + ++VNAC SRD ++NV GVCFV  DIT +K +MD
Sbjct: 681  ALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMD 740

Query: 743  KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI--------- 793
            KF R++GDY+AI+Q+ NPLIPPIF +DE   C EWN AM K+TGW R EV+         
Sbjct: 741  KFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGELF 800

Query: 794  ------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEG 829
                                     +TG  TE  PFGFF R G++VE  L+ S++ D EG
Sbjct: 801  GTHMAACRLKNQEAFVNLGVVLNKAMTGLETEKVPFGFFARNGKYVECLLSVSKKLDVEG 860

Query: 830  KVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLES 889
             V G FCF+Q+  P+LQ AL  Q L +     ++  L+Y++++++NPL GI F  K+LE 
Sbjct: 861  LVTGVFCFLQLASPELQQALHIQRLSEQTALKRLNALSYMKRQIRNPLCGIIFSRKMLEG 920

Query: 890  SSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMV 949
            +++   Q+Q L TS  C++Q+  I+D  DL  I +G ++L+  EF L  +L   +SQVM 
Sbjct: 921  TALGTEQKQLLRTSAQCQQQLSKILDDSDLDSIIDGYLDLEMAEFTLHEVLVTSLSQVMT 980

Query: 950  LLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLK 1009
                K++ +++D+ E+I   +L GD +RLQ VL+DFL   +   P+    V    L   +
Sbjct: 981  KSNGKSIRIVNDVAEQIVMETLYGDSLRLQQVLADFLLISINFTPNGGQVVVAGTLTKEQ 1040

Query: 1010 LIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVR 1069
            L K     V ++  +TH G G+P  L+  M+ G N   + EG+ L +SRKLL +MNG VR
Sbjct: 1041 LGKSV-HLVKLELSITHGGSGVPEALLNQMF-GNNGLESEEGISLLISRKLLKLMNGDVR 1098

Query: 1070 YVRENSKCYFVIDLEL 1085
            Y+RE  K  F++  EL
Sbjct: 1099 YLREAGKSAFILSAEL 1114


>gi|343408421|gb|AEM06736.1| phytochrome C [Arabidopsis thaliana]
          Length = 1111

 Score = 1033 bits (2672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1094 (47%), Positives = 725/1094 (66%), Gaps = 64/1094 (5%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LT YDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTSYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHGSPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPKKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM-NGRVRYV 1071
               + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +M  G +RY+
Sbjct: 1035 KRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLMERGTLRYL 1094

Query: 1072 RENSKCYFVIDLEL 1085
            RE+    FVI  E 
Sbjct: 1095 RESEMSAFVILTEF 1108


>gi|371940254|dbj|BAL45564.1| Phytochrome A2 [Glycine soja]
          Length = 1123

 Score = 1033 bits (2672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1096 (47%), Positives = 723/1096 (65%), Gaps = 60/1096 (5%)

Query: 43   NADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ----ITAYLSKIQRGGLIQPFGC 98
              DA L A FE+S +S    +  R +    +GV + +     TAYL  +Q+G +IQPFGC
Sbjct: 27   TVDAKLHATFEESGSSFDYSSSVR-ISGTADGVNQPRHDKVTTAYLHHMQKGKMIQPFGC 85

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
            +LA++E T ++I YSEN  EML + S +     D    G IG D +TLFT PS ++L KA
Sbjct: 86   LLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALG-IGTDIKTLFTAPSASALQKA 144

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
                E+SLLNP+L+H  +    KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS K
Sbjct: 145  LGFAEVSLLNPVLIHCKTSG--KPFYAIIHRVTGSMIIDFEPVKPYEVPMTAAGALQSYK 202

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FH+DDHGEV++EI +  LE
Sbjct: 203  LAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLE 262

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PYLG+H+PA DIPQA+RFLF +N+VRMI DCHA  V V+Q ++L   L L  STLR+PH 
Sbjct: 263  PYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVRVLQDEKLPFDLTLCGSTLRAPHS 322

Query: 335  CHLQYMTNMGSIASLVMAVIINSKDS------------MKLWGLVVCHHTSPRYIPFPLR 382
            CH QYM NM SIASLVMAV++N  +              +LWGLVVCH+T+PR++PFPLR
Sbjct: 323  CHAQYMANMDSIASLVMAVVVNDNEEDGDTDAIQPQKRKRLWGLVVCHNTTPRFVPFPLR 382

Query: 383  YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
            YACEFL Q F++ +  E+++  Q+ EKNILRTQ LLCD+++RDAP  IV++SP+IMDLVK
Sbjct: 383  YACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDLVMRDAPLGIVSESPNIMDLVK 442

Query: 443  CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
            CDGAAL Y  + W +GVTP+ESQ+++IA+WL   H D TG STDSL++AG+P A  LG  
Sbjct: 443  CDGAALIYKNKVWRLGVTPSESQIREIAFWLSEYHMDSTGFSTDSLSDAGFPSALSLGDV 502

Query: 503  VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
            VCGMA  R+T+KD +FWFRSHTA E++WGGAKH    KD+G +MHPRSSFK FL+VVK R
Sbjct: 503  VCGMAAVRVTAKDVVFWFRSHTAAEIRWGGAKHEAGEKDDGRRMHPRSSFKVFLDVVKAR 562

Query: 563  SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVR 622
            S PW+  EI+A+HSLQ+++R++F++ E  + +    NT+ +  K++G+ EL +V  E+VR
Sbjct: 563  SLPWKEYEIDAMHSLQLILRNAFKDTESMDLNTKAINTRLSDLKIEGMQELEAVTSEIVR 622

Query: 623  LIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICR 682
            LIETAT PI  VD  G +NGWN K+AELTGLP  EAMGK L+  +V + S   V+ ++  
Sbjct: 623  LIETATVPILAVDVDGLVNGWNIKIAELTGLPVGEAMGKHLLT-LVEDSSTDRVKKMLNL 681

Query: 683  ALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742
            ALLGEE+KNV+ +++    +     + ++VNAC SRD ++NV GVCFV  DIT +K +MD
Sbjct: 682  ALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMD 741

Query: 743  KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI--------- 793
            KF R++GDY+AI+Q+ NPLIPPIF +DE   C EWN AM K+TGW R EV+         
Sbjct: 742  KFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGELF 801

Query: 794  ------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEG 829
                                     +TG  TE  PFGFF R G++VE  L+ S++ D EG
Sbjct: 802  GTHMAACRLKNQEAFVNLGVVLNKAMTGLETEKVPFGFFARNGKYVECLLSVSKKLDVEG 861

Query: 830  KVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLES 889
             V G FCF+Q+  P+LQ AL  Q L +     ++  L Y++++++NPL GI F  K+LE 
Sbjct: 862  LVTGVFCFLQLASPELQQALHIQRLSEQTALKRLNALNYMKRQIRNPLCGIIFSRKMLEG 921

Query: 890  SSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMV 949
            +++   Q+Q L TS  C++Q+  I+D  DL  I +G ++L+  EF L  +L   +SQVM 
Sbjct: 922  TALGTEQKQLLRTSAQCQQQLSKILDDSDLDSIIDGYLDLEMAEFTLHEVLVTSLSQVMT 981

Query: 950  LLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLK 1009
                K++ +++D+ E+I   +L GD +RLQ VL+DFL   +   P+    V    L   +
Sbjct: 982  KSNGKSIRIVNDVAEQIVMETLYGDSLRLQQVLADFLLISINFTPNGGQVVVAGTLTKEQ 1041

Query: 1010 LIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVR 1069
            L K     V ++  +TH G G+P  L+  M+ G N   + EG+ L +SRKLL +MNG VR
Sbjct: 1042 LGKSV-HLVKLELSITHGGSGVPEALLNQMF-GNNGLESEEGISLLISRKLLKLMNGDVR 1099

Query: 1070 YVRENSKCYFVIDLEL 1085
            Y+RE  K  F++  EL
Sbjct: 1100 YLREAGKSAFILSAEL 1115


>gi|240119423|dbj|BAH79260.1| phytochrome C [Cardamine nipponica]
          Length = 1111

 Score = 1033 bits (2671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/1102 (47%), Positives = 725/1102 (65%), Gaps = 66/1102 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLI 93
            +   +  DA L   FE+S    + F+YS SV ++ P     +P   ++ YL KIQRG LI
Sbjct: 19   VTSQFLVDATLHRNFEES---ERLFDYSASVNLNMPSSSFDIPSSAVSTYLQKIQRGMLI 75

Query: 94   QPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGA 149
            QPFGC++ V+E   ++I +SEN  EML L   +    E  E    IG D ++LF  P  +
Sbjct: 76   QPFGCLIVVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALS-IGTDVKSLFQSPGSS 134

Query: 150  SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
            +L KA    EIS+LNPI +H  S S  KPFYAILHRI+ G+VIDLEP    +  ++ AGA
Sbjct: 135  ALQKAIDFGEISILNPITLHCMSSS--KPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGA 192

Query: 210  VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
            ++S KLA  +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FHDD HGEV++E  
Sbjct: 193  LRSYKLAAKSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHDDGHGEVIAECC 252

Query: 270  RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            R DLEPYLG+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STL
Sbjct: 253  REDLEPYLGLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTL 312

Query: 330  RSPHGCHLQYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPF 379
            R+PHGCH QYM+NMGS+ASLVM+V IN +DS            LWGLVVCHH SPR++PF
Sbjct: 313  RAPHGCHAQYMSNMGSVASLVMSVTINCRDSDDMNRDLQTGRSLWGLVVCHHASPRFVPF 372

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEF++Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  I+TQSP+IMD
Sbjct: 373  PLRYACEFMIQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIITQSPNIMD 432

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAAL+Y  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++ 
Sbjct: 433  LVKCDGAALFYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVF 492

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G+++CGMA   IT KDFLFWFRS  AKE+KWGGA+H P  +D G +MHPRSSFKAF+E+V
Sbjct: 493  GESICGMAAVYITEKDFLFWFRSSNAKEIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIV 551

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACE 619
            + +S PW+  E++AI+SLQ++++ S Q    E  SK   N     +++Q VDEL  +  E
Sbjct: 552  RWKSMPWDDMEMDAINSLQLIIKGSLQ----EEHSKTVENVPFVDNRVQKVDELCVIVNE 607

Query: 620  MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679
            MVRLI+TA  PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V N+
Sbjct: 608  MVRLIDTAAVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSAETVTNM 666

Query: 680  ICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKV 739
            +  AL G E++  E+++R F  +++ S + ++VN C SRD KNNV GVCF+GQD+T +K 
Sbjct: 667  LALALKGSEERGAEIRIRAFGPKRKSSPIDLVVNTCCSRDRKNNVLGVCFIGQDVTGQKT 726

Query: 740  LMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------ 793
            L + + R+QGDY  I+ S + LIPPIF ++E+  CSEWN AM+K++G  R E +      
Sbjct: 727  LTENYSRMQGDYARIMSSHSTLIPPIFMTNEDGLCSEWNNAMQKLSGIKREEAVNKMLLG 786

Query: 794  -------------------------GITGQGTENFP---FGFFNRQGQFVEVALTASRRT 825
                                        G G +N     FGF++R G F+E  L+A++RT
Sbjct: 787  EVFTSNEYGCPVKDHDTLTKLRIALNAVGSGQKNVEKLFFGFYHRDGSFIEALLSANKRT 846

Query: 826  DAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHK 885
            D EGKV G  CF+Q+  P+LQ AL+ Q + +  I   + +LAY+RQEVKNP   I F+  
Sbjct: 847  DIEGKVTGVLCFLQVPSPELQYALQVQRVSEQAIACALDKLAYLRQEVKNPEKAISFLQN 906

Query: 886  LLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVS 945
             L +S +SE+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV 
Sbjct: 907  SLHTSGLSEDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELGCSEFNLEESLEAVVK 966

Query: 946  QVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKV 1004
            QV  L  ++ + ++ D P EI ++ L GD +RLQ +LS+ L   +   P+  G  V  KV
Sbjct: 967  QVTELSIERKVQIICDYPIEISSMRLYGDNLRLQQILSETLLSSLHFTPAMKGLCVSFKV 1026

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL-IM 1063
            +  ++ I    + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +M
Sbjct: 1027 IARVEAIGKRMKRVELEFRVIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLM 1086

Query: 1064 MNGRVRYVRENSKCYFVIDLEL 1085
              G +RY+RE+    FVI  E 
Sbjct: 1087 ERGTLRYLRESEMSAFVILTEF 1108


>gi|343408433|gb|AEM06742.1| phytochrome C [Arabidopsis thaliana]
          Length = 1111

 Score = 1033 bits (2671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/1094 (48%), Positives = 725/1094 (66%), Gaps = 64/1094 (5%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS SV ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASVNLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH S R++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASLRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL-IMMNGRVRYV 1071
               + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +M  G +RY+
Sbjct: 1035 KRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLMERGTLRYL 1094

Query: 1072 RENSKCYFVIDLEL 1085
            RE+    FVI  E 
Sbjct: 1095 RESEMSAFVILTEF 1108


>gi|240119411|dbj|BAH79254.1| phytochrome C [Cardamine nipponica]
          Length = 1112

 Score = 1033 bits (2671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/1103 (47%), Positives = 727/1103 (65%), Gaps = 68/1103 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLI 93
            +   +  DA L   FE+S    + F+YS SV ++ P     +P   ++ YL KIQRG LI
Sbjct: 20   VTSQFLVDATLHRNFEES---ERLFDYSASVNLNMPSSSFDIPSSAVSTYLQKIQRGMLI 76

Query: 94   QPFGCMLAVEEPTFRIIGYSENCLEML-----DLRSRSEDFELNGLIGIDARTLFTPPSG 148
            QPFGC++ V+E   ++I +SEN  EML      + S  +   L+  IG D ++LF  P  
Sbjct: 77   QPFGCLIVVDEKNLKVIAFSENTEEMLGSIPHTVPSMEQREALS--IGTDVKSLFQSPGS 134

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            ++L KA    EIS+LNPI +H  S S  KPFYAILHRI+ G+VIDLEP    +  ++ AG
Sbjct: 135  SALQKAIDFGEISILNPITLHCMSSS--KPFYAILHRIEEGLVIDLEPVSPDEVPVTAAG 192

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A++S KLA  +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FHDD HGEV++E 
Sbjct: 193  ALRSYKLAAKSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHDDGHGEVIAEC 252

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             R DLEPYLG+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  ST
Sbjct: 253  CREDLEPYLGLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGST 312

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIP 378
            LR+PHGCH QYM+NMGS+ASLVM+V IN +DS            LWGLVVCHH SPR++P
Sbjct: 313  LRAPHGCHAQYMSNMGSVASLVMSVTINCRDSDDMNRDLQTGRSLWGLVVCHHASPRFVP 372

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEF++Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  I+TQSP+IM
Sbjct: 373  FPLRYACEFMIQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIITQSPNIM 432

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAAL+Y  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++
Sbjct: 433  DLVKCDGAALFYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASV 492

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
            LG+++CGMA   IT KDFLFWFRS  AKE+KWGGA+H P  +D G +MHPRSSFKAF+E+
Sbjct: 493  LGESICGMAAVYITEKDFLFWFRSSNAKEIKWGGARHDPNDRD-GKRMHPRSSFKAFMEI 551

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
            V+ +S PW+  E++AI+SLQ++++ S Q    E  SK   N     +++Q VDEL  +  
Sbjct: 552  VRWKSMPWDDMEMDAINSLQLIIKGSLQ----EEHSKTVENVPFVDNRVQKVDELCVIVN 607

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLI+TA  PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V N
Sbjct: 608  EMVRLIDTAAVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSAETVTN 666

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            ++  AL G E++  E+++R F  +++ S + ++VN C SRD KNNV GVCF+GQD+T +K
Sbjct: 667  MLALALKGSEERGAEIRIRAFGPKRKSSPIDLVVNTCCSRDRKNNVLGVCFIGQDVTGQK 726

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI----- 793
             L + + R+QGDY  I+ S + LIPPIF ++E+  CSEWN AM+K++G  R E +     
Sbjct: 727  TLTENYSRMQGDYARIMSSHSTLIPPIFMTNEDGLCSEWNNAMQKLSGIKREEAVNKMLL 786

Query: 794  --------------------------GITGQGTENFP---FGFFNRQGQFVEVALTASRR 824
                                         G G +N     FGF++R G F+E  L+A++R
Sbjct: 787  GEVFTSNEYGCPVKDHDTLTKLRIALNAVGSGQKNVEKLFFGFYHRDGSFIEALLSANKR 846

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            TD EGKV G  CF+Q+  P+LQ AL+ Q + +  I   + +LAY+RQEVKNP   I F+ 
Sbjct: 847  TDIEGKVTGVLCFLQVPSPELQYALQVQRVSEQAITCALDKLAYLRQEVKNPEKAISFLQ 906

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
              L +S +SE+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV
Sbjct: 907  NSLHTSGLSEDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELGCSEFNLEESLEAVV 966

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIK 1003
             QV  L  ++ + ++ D P EI ++ L GD +RLQ +LS+ L   +   P+  G  V  K
Sbjct: 967  KQVTELSIERKVQIICDYPIEISSMRLYGDNLRLQQILSETLLSSLHFTPAMKGLCVSFK 1026

Query: 1004 VLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL-I 1062
            V+  ++ I    + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +
Sbjct: 1027 VIARVEAIGKRMKRVELEFRVIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKL 1086

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
            M  G +RY+RE+    FVI  E 
Sbjct: 1087 MERGTLRYLRESEMSAFVILTEF 1109


>gi|240119409|dbj|BAH79253.1| phytochrome C [Cardamine nipponica]
          Length = 1112

 Score = 1033 bits (2670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/1103 (47%), Positives = 727/1103 (65%), Gaps = 68/1103 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLI 93
            +   +  DA L   FE+S    + F+YS SV ++ P     +P   ++ YL KIQRG LI
Sbjct: 20   VTSQFLVDATLHRNFEES---ERLFDYSASVNLNMPSSSFDIPSSAVSTYLQKIQRGMLI 76

Query: 94   QPFGCMLAVEEPTFRIIGYSENCLEML-----DLRSRSEDFELNGLIGIDARTLFTPPSG 148
            QPFGC++ V+E   ++I +SEN  EML      + S  +   L+  IG D ++LF  P  
Sbjct: 77   QPFGCLIVVDEKNLKVIAFSENTEEMLGSIPHTVPSMEQREALS--IGTDVKSLFQSPGS 134

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            ++L KA    EIS+LNPI +H  S S  KPFYAILHRI+ G+VIDLEP    +  ++ AG
Sbjct: 135  SALQKAIDFGEISILNPITLHCMSSS--KPFYAILHRIEEGLVIDLEPVSPDEVPVTAAG 192

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A++S KLA  +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FHDD HGEV++E 
Sbjct: 193  ALRSYKLAAKSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHDDGHGEVIAEC 252

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             R DLEPYLG+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  ST
Sbjct: 253  CREDLEPYLGLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGST 312

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIP 378
            LR+PHGCH QYM+NMGS+ASLVM+V IN +DS            LWGLVVCHH SPR++P
Sbjct: 313  LRAPHGCHAQYMSNMGSVASLVMSVTINCRDSDDMNRDLQTGRSLWGLVVCHHASPRFVP 372

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
            FPLRYACEF++Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  I+TQSP+IM
Sbjct: 373  FPLRYACEFMIQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIITQSPNIM 432

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAAL+Y  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++
Sbjct: 433  DLVKCDGAALFYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASV 492

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
            LG+++CGMA   IT KDFLFWFRS  AKE+KWGGA+H P  +D G +MHPRSSFKAF+E+
Sbjct: 493  LGESICGMAAVYITEKDFLFWFRSSNAKEIKWGGARHDPNDRD-GKRMHPRSSFKAFMEI 551

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
            V+ +S PW+  E++AI+SLQ++++ S Q    E  SK   N     +++Q VDEL  +  
Sbjct: 552  VRWKSMPWDDMEMDAINSLQLIIKGSLQ----EEHSKTVENVPFVDNRVQKVDELCVIVN 607

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLI+TA  PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V N
Sbjct: 608  EMVRLIDTAAVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSAETVTN 666

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            ++  AL G E++  E+++R F  +++ S + ++VN C SRD KNNV GVCF+GQD+T +K
Sbjct: 667  MLALALKGSEERGAEIRIRAFGPKRKSSPIDLVVNTCCSRDRKNNVLGVCFIGQDVTGQK 726

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI----- 793
             L + + R+QGDY  I+ S + LIPPIF ++E+  CSEWN AM+K++G  R E +     
Sbjct: 727  TLTENYSRMQGDYARIMSSHSTLIPPIFMTNEDGLCSEWNNAMQKLSGIKREEAVNKMLL 786

Query: 794  --------------------------GITGQGTENFP---FGFFNRQGQFVEVALTASRR 824
                                         G G +N     FGF++R G F+E  L+A++R
Sbjct: 787  GEVFTSNEYGCPVKDHDTLTKLRIALNAVGSGQKNVEKLFFGFYHRDGSFIEALLSANKR 846

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
            TD EGKV G  CF+Q+  P+LQ AL+ Q + +  I   + +LAY+RQEVKNP   I F+ 
Sbjct: 847  TDIEGKVTGVLCFLQVPSPELQYALQVQRVSEQAIACALDKLAYLRQEVKNPEKAISFLQ 906

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVV 944
              L +S +SE+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV
Sbjct: 907  NSLHTSGLSEDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELGCSEFNLEESLEAVV 966

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIK 1003
             QV  L  ++ + ++ D P EI ++ L GD +RLQ +LS+ L   +   P+  G  V  K
Sbjct: 967  KQVTELSIERKVQIICDYPIEISSMRLYGDNLRLQQILSETLLSSLHFTPAMKGLCVSFK 1026

Query: 1004 VLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL-I 1062
            V+  ++ I    + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +
Sbjct: 1027 VIARVEAIGKRMKRVELEFRVIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKL 1086

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
            M  G +RY+RE+    FVI  E 
Sbjct: 1087 MERGTLRYLRESEMSAFVILTEF 1109


>gi|240119407|dbj|BAH79252.1| phytochrome C [Cardamine nipponica]
 gi|240119413|dbj|BAH79255.1| phytochrome C [Cardamine nipponica]
 gi|240119415|dbj|BAH79256.1| phytochrome C [Cardamine nipponica]
 gi|240119417|dbj|BAH79257.1| phytochrome C [Cardamine nipponica]
 gi|240119421|dbj|BAH79259.1| phytochrome C [Cardamine nipponica]
          Length = 1112

 Score = 1033 bits (2670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1102 (47%), Positives = 725/1102 (65%), Gaps = 66/1102 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLI 93
            +   +  DA L   FE+S    + F+YS SV ++ P     +P   ++ YL KIQRG LI
Sbjct: 20   VTSQFLVDATLHRNFEES---ERLFDYSASVNLNMPSSSFDIPSSAVSTYLQKIQRGMLI 76

Query: 94   QPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGA 149
            QPFGC++ V+E   ++I +SEN  EML L   +    E  E    IG D ++LF  P  +
Sbjct: 77   QPFGCLIVVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALS-IGTDVKSLFQSPGSS 135

Query: 150  SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
            +L KA    EIS+LNPI +H  S S  KPFYAILHRI+ G+VIDLEP    +  ++ AGA
Sbjct: 136  ALQKAIDFGEISILNPITLHCMSSS--KPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGA 193

Query: 210  VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
            ++S KLA  +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FHDD HGEV++E  
Sbjct: 194  LRSYKLAAKSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHDDGHGEVIAECC 253

Query: 270  RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            R DLEPYLG+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STL
Sbjct: 254  REDLEPYLGLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTL 313

Query: 330  RSPHGCHLQYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPF 379
            R+PHGCH QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PF
Sbjct: 314  RAPHGCHAQYMSNMGSVASLVMSVTINCSDSDDMNRDLQTGRSLWGLVVCHHASPRFMPF 373

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
            PLRYACEF++Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  I+TQSP+IMD
Sbjct: 374  PLRYACEFMIQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIITQSPNIMD 433

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            LVKCDGAAL+Y  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++L
Sbjct: 434  LVKCDGAALFYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVL 493

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G+++CGMA   IT KDFLFWFRS  AKE+KWGGA+H P  +D G +MHPRSSFKAF+E+V
Sbjct: 494  GESICGMAAVYITEKDFLFWFRSSNAKEIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIV 552

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACE 619
            + +S PW+  E++AI+SLQ++++ S Q    E  SK   N     +++Q VDEL  +  E
Sbjct: 553  RWKSMPWDDMEMDAINSLQLIIKGSLQ----EEHSKTVENVPFVDNRVQKVDELCVIVNE 608

Query: 620  MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679
            MVRLI+TA  PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V N+
Sbjct: 609  MVRLIDTAAVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSAETVTNM 667

Query: 680  ICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKV 739
            +  AL G E++  E+++R F  +++ S + ++VN C SRD KNNV GVCF+GQD+T +K 
Sbjct: 668  LALALKGSEERGAEIRIRAFGPKRKSSPIDLVVNTCCSRDRKNNVLGVCFIGQDVTGQKT 727

Query: 740  LMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------ 793
            L + + R+QGDY  I+ S + LIPPIF ++E+  CSEWN AM+K++G  R E +      
Sbjct: 728  LTENYSRMQGDYARIMSSHSTLIPPIFMTNEDGLCSEWNNAMQKLSGIKREEAVNKMLLG 787

Query: 794  -------------------------GITGQGTENFP---FGFFNRQGQFVEVALTASRRT 825
                                        G G +N     FGF++R G F+E  L+A++RT
Sbjct: 788  EVFTSNEYGCPVKDHDTLTKLRIALNAVGSGQKNVEKLFFGFYHRDGSFIEALLSANKRT 847

Query: 826  DAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHK 885
            D EGKV G  CF+Q+  P+LQ AL+ Q + +  I   + +LAY+RQEVKNP   I F+  
Sbjct: 848  DIEGKVTGVLCFLQVPSPELQYALQVQRVSEQAIACALDKLAYLRQEVKNPEKAISFLQN 907

Query: 886  LLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVS 945
             L +S +SE+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV 
Sbjct: 908  SLHTSGLSEDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELGCSEFNLEESLEAVVK 967

Query: 946  QVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKV 1004
            QV  L  ++ + ++ D P EI ++ L GD +RLQ +LS+ L   +   P+  G  V  KV
Sbjct: 968  QVTELSIERKVQIICDYPIEISSMRLYGDNLRLQQILSETLLSSLHFTPAMKGLCVSFKV 1027

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL-IM 1063
            +  ++ I    + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +M
Sbjct: 1028 IARVEAIGKRMKRVELEFRVIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLM 1087

Query: 1064 MNGRVRYVRENSKCYFVIDLEL 1085
              G +RY+RE+    FVI  E 
Sbjct: 1088 ERGTLRYLRESEMSAFVILTEF 1109


>gi|156752995|gb|ABU94243.1| phytochrome P [Pinus sylvestris]
          Length = 736

 Score = 1033 bits (2670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/727 (68%), Positives = 583/727 (80%), Gaps = 44/727 (6%)

Query: 135 IGIDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVID 193
           IG D RTLFT  S  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID
Sbjct: 14  IGTDVRTLFTAASAHSLEKAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVID 70

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD  +S AGAVQSQKLAV AISRLQ+LP GD+GLLCDTVVE+V++LTGYDRVM+
Sbjct: 71  LEPLRTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDVGLLCDTVVENVRELTGYDRVMV 130

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 131 YKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVI 190

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLW 364
           QS+EL QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D         SMKLW
Sbjct: 191 QSEELMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDDEGGGSGRNSMKLW 250

Query: 365 GLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLR 424
           GLVVCHHTSPR +PFPLRYACEFL+QA  LQL MELQ+A QL EK+ILRTQ LLCDMLLR
Sbjct: 251 GLVVCHHTSPRAVPFPLRYACEFLMQALGLQLNMELQLAAQLTEKHILRTQTLLCDMLLR 310

Query: 425 DAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLS 484
           DAP  IVTQSPSI DLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +HGD TGLS
Sbjct: 311 DAPMGIVTQSPSIKDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLS 370

Query: 485 TDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGG 544
           TDSLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+  
Sbjct: 371 TDSLADAGYPGAASLGDAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDAR 430

Query: 545 KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNG 604
           +MHPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SF+++++   +K   +++ N 
Sbjct: 431 RMHPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFRDIDDSG-TKTMVHSRLND 489

Query: 605 SKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLI 664
            ++QG+DELSSVA EMVRLIETATAPI  VD +G +NGWNAKVAELTGLP +EAMG SL+
Sbjct: 490 LRLQGIDELSSVASEMVRLIETATAPILAVDYNGLVNGWNAKVAELTGLPVAEAMGMSLV 549

Query: 665 DEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNV 724
            ++V E+S   VE ++  AL GEE+KNVE+ L+ F  QK+   V ++VNAC+SRD+ +N+
Sbjct: 550 QDLVFEQSVERVEKMLHNALRGEEEKNVEMMLKTFGPQKEKEAVILVVNACSSRDFTDNI 609

Query: 725 KGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKV 784
            GVCFVGQD+T +KV+MDKFIR+QGDY +I+QS NPLIPPIFASDE ACCSEWNAAMEKV
Sbjct: 610 VGVCFVGQDVTSQKVVMDKFIRIQGDYRSIVQSPNPLIPPIFASDEYACCSEWNAAMEKV 669

Query: 785 TGWMRHEVIG------------------------------ITGQGTENFPFGFFNRQGQF 814
           TGW   EVIG                              I GQ  E FPF FF++QG++
Sbjct: 670 TGWTHDEVIGKMLVGEIFGGCCRLKGQDAVTKFTIVLHSAIDGQEIEKFPFAFFDKQGKY 729

Query: 815 VEVALTA 821
           VE  LTA
Sbjct: 730 VEALLTA 736


>gi|371940260|dbj|BAL45567.1| Phytochrome A2 [Glycine soja]
          Length = 1123

 Score = 1032 bits (2669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/1096 (47%), Positives = 723/1096 (65%), Gaps = 60/1096 (5%)

Query: 43   NADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ----ITAYLSKIQRGGLIQPFGC 98
              DA L A FE+S +S    +  R +    +GV + +     TAYL  +Q+G +IQPFGC
Sbjct: 27   TVDAKLHATFEESGSSFDYSSSVR-ISGTADGVNQPRHDKVTTAYLHHMQKGKMIQPFGC 85

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
            +LA++E T ++I YSEN  EML + S +     D    G IG D +TLFT PS ++L KA
Sbjct: 86   LLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALG-IGTDIKTLFTAPSASALQKA 144

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
                E+SLLNP+L+H  +    KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS K
Sbjct: 145  LGFAEVSLLNPVLIHCKTSG--KPFYAIIHRVTGSMIIDFEPVKPYEVPMTAAGALQSYK 202

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FH+DDHGEV++EI +  LE
Sbjct: 203  LAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLE 262

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
             YLG+H+PA DIPQA+RFLF +N+VRMI DCHA  V V+Q ++L   L L  STLR+PH 
Sbjct: 263  LYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVRVLQDEKLPFDLTLCGSTLRAPHS 322

Query: 335  CHLQYMTNMGSIASLVMAVIINSKDS------------MKLWGLVVCHHTSPRYIPFPLR 382
            CH QYM NM SIASLVMAV++N  +              +LWGLVVCH+T+PR++PFPLR
Sbjct: 323  CHAQYMANMDSIASLVMAVVVNDNEEDGDTDAIQPQKRKRLWGLVVCHNTTPRFVPFPLR 382

Query: 383  YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
            YACEFL Q F++ +  E+++  Q+ EKNILRTQ LLCD+++RDAP  IV++SP+IMDLVK
Sbjct: 383  YACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDLVMRDAPLGIVSESPNIMDLVK 442

Query: 443  CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
            CDGAAL Y  + W +GVTP+ESQ+++IA+WL   H D TG STDSL++AG+P A  LG  
Sbjct: 443  CDGAALIYKNKVWRLGVTPSESQIREIAFWLSEYHMDSTGFSTDSLSDAGFPSALSLGDV 502

Query: 503  VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
            VCGMA  R+T+KD +FWFRSHTA E++WGGAKH    KD+G +MHPRSSFK FL+VVK R
Sbjct: 503  VCGMAAVRVTAKDVVFWFRSHTAAEIRWGGAKHEAGEKDDGRRMHPRSSFKVFLDVVKAR 562

Query: 563  SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVR 622
            S PW+  EI+A+HSLQ+++R++F++ E  + +    NT+ +  K++G+ EL +V  E+VR
Sbjct: 563  SLPWKEYEIDAMHSLQLILRNAFKDTESMDLNTKAINTRLSDLKIEGMQELEAVTSEIVR 622

Query: 623  LIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICR 682
            LIETAT PI  VD  G +NGWN K+AELTGLP  EAMGK L+  +V + S   V+ ++  
Sbjct: 623  LIETATVPILAVDVDGLVNGWNIKIAELTGLPVGEAMGKHLLT-LVEDSSTDRVKKMLNL 681

Query: 683  ALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742
            ALLGEE+KNV+ +++    +     + ++VNAC SRD ++NV GVCFV  DIT +K +MD
Sbjct: 682  ALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMD 741

Query: 743  KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI--------- 793
            KF R++GDY+AI+Q+ NPLIPPIF +DE   C EWN AM K+TGW R EV+         
Sbjct: 742  KFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGELF 801

Query: 794  ------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEG 829
                                     +TG  TE  PFGFF R G++VE  L+ S++ D EG
Sbjct: 802  GTHMAACRLKNQEAFVNLGVVLNKAMTGLETEKVPFGFFARNGKYVECLLSVSKKLDVEG 861

Query: 830  KVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLES 889
             V G FCF+Q+  P+LQ AL  Q L +     ++  L+Y++++++NPL GI F  K+LE 
Sbjct: 862  LVTGVFCFLQLASPELQQALHIQRLSEQTALKRLNALSYMKRQIRNPLCGIIFSRKMLEG 921

Query: 890  SSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMV 949
            +++   Q+Q L TS  C++Q+  I+D  DL  I +G ++L+  EF L  +L   +SQVM 
Sbjct: 922  TALGTEQKQLLRTSAQCQQQLSKILDDSDLDSIIDGYLDLEMAEFTLHEVLVTSLSQVMT 981

Query: 950  LLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLK 1009
                K++ +++D+ E+I   +L GD +RLQ VL+DFL   +   P+    V    L   +
Sbjct: 982  KSNGKSIRIVNDVAEQIVMETLYGDSLRLQQVLADFLLISINFTPNGGQVVVAGTLTKEQ 1041

Query: 1010 LIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVR 1069
            L K     V ++  +TH G G+P  L+  M+ G N   + EG+ L +SRKLL +MNG VR
Sbjct: 1042 LGKSV-HLVKLELSITHGGSGVPEALLNQMF-GNNGLESEEGISLLISRKLLKLMNGDVR 1099

Query: 1070 YVRENSKCYFVIDLEL 1085
            Y+RE  K  F++  EL
Sbjct: 1100 YLREAGKSAFILSAEL 1115


>gi|156752953|gb|ABU94222.1| phytochrome P [Pinus sylvestris]
 gi|156752955|gb|ABU94223.1| phytochrome P [Pinus sylvestris]
 gi|156752957|gb|ABU94224.1| phytochrome P [Pinus sylvestris]
 gi|156752959|gb|ABU94225.1| phytochrome P [Pinus sylvestris]
 gi|156752961|gb|ABU94226.1| phytochrome P [Pinus sylvestris]
 gi|156752963|gb|ABU94227.1| phytochrome P [Pinus sylvestris]
 gi|156752965|gb|ABU94228.1| phytochrome P [Pinus sylvestris]
 gi|156752967|gb|ABU94229.1| phytochrome P [Pinus sylvestris]
 gi|156752969|gb|ABU94230.1| phytochrome P [Pinus sylvestris]
 gi|156752971|gb|ABU94231.1| phytochrome P [Pinus sylvestris]
 gi|156752973|gb|ABU94232.1| phytochrome P [Pinus sylvestris]
 gi|156752975|gb|ABU94233.1| phytochrome P [Pinus sylvestris]
 gi|156752977|gb|ABU94234.1| phytochrome P [Pinus sylvestris]
 gi|156752979|gb|ABU94235.1| phytochrome P [Pinus sylvestris]
 gi|156752981|gb|ABU94236.1| phytochrome P [Pinus sylvestris]
 gi|156752983|gb|ABU94237.1| phytochrome P [Pinus sylvestris]
 gi|156752985|gb|ABU94238.1| phytochrome P [Pinus sylvestris]
 gi|156752987|gb|ABU94239.1| phytochrome P [Pinus sylvestris]
 gi|156752989|gb|ABU94240.1| phytochrome P [Pinus sylvestris]
 gi|156752991|gb|ABU94241.1| phytochrome P [Pinus sylvestris]
 gi|156752993|gb|ABU94242.1| phytochrome P [Pinus sylvestris]
 gi|156752997|gb|ABU94244.1| phytochrome P [Pinus sylvestris]
 gi|156752999|gb|ABU94245.1| phytochrome P [Pinus sylvestris]
 gi|156753001|gb|ABU94246.1| phytochrome P [Pinus sylvestris]
 gi|156753003|gb|ABU94247.1| phytochrome P [Pinus sylvestris]
 gi|156753005|gb|ABU94248.1| phytochrome P [Pinus sylvestris]
 gi|156753007|gb|ABU94249.1| phytochrome P [Pinus sylvestris]
 gi|156753009|gb|ABU94250.1| phytochrome P [Pinus sylvestris]
 gi|156753011|gb|ABU94251.1| phytochrome P [Pinus sylvestris]
 gi|156753013|gb|ABU94252.1| phytochrome P [Pinus sylvestris]
 gi|156753015|gb|ABU94253.1| phytochrome P [Pinus sylvestris]
 gi|156753017|gb|ABU94254.1| phytochrome P [Pinus sylvestris]
 gi|156753019|gb|ABU94255.1| phytochrome P [Pinus sylvestris]
 gi|156753021|gb|ABU94256.1| phytochrome P [Pinus sylvestris]
 gi|156753025|gb|ABU94258.1| phytochrome P [Pinus sylvestris]
 gi|156753031|gb|ABU94261.1| phytochrome P [Pinus sylvestris]
          Length = 736

 Score = 1032 bits (2668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/727 (68%), Positives = 582/727 (80%), Gaps = 44/727 (6%)

Query: 135 IGIDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVID 193
           IG D RTLFT  S  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID
Sbjct: 14  IGTDVRTLFTAASAHSLEKAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVID 70

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD  +S AGAVQSQKLAV AISRLQ+LP GD+GLLCDTVVE+V++LTGYDRVM+
Sbjct: 71  LEPLRTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDVGLLCDTVVENVRELTGYDRVMV 130

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 131 YKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVI 190

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLW 364
           QS+EL QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D         SMKLW
Sbjct: 191 QSEELMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDDEGGGSGRNSMKLW 250

Query: 365 GLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLR 424
           GLVVCHHTSPR +PFPLRYACEFL+QA  LQL MELQ+A QL EK+ILRTQ LLCDMLLR
Sbjct: 251 GLVVCHHTSPRAVPFPLRYACEFLMQALGLQLNMELQLAAQLTEKHILRTQTLLCDMLLR 310

Query: 425 DAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLS 484
           DAP  IVTQSPSI DLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +HGD TGLS
Sbjct: 311 DAPMGIVTQSPSIKDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLS 370

Query: 485 TDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGG 544
           TDSLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+  
Sbjct: 371 TDSLADAGYPGAASLGDAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDAR 430

Query: 545 KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNG 604
           +MHPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SF+++++   +K   +++ N 
Sbjct: 431 RMHPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFRDIDDSG-TKTMVHSRLND 489

Query: 605 SKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLI 664
            ++QG+DELSSVA EMVRLIETATAPI  VD +G +NGWNAKVAELTGLP  EAMG SL+
Sbjct: 490 LRLQGIDELSSVASEMVRLIETATAPILAVDYNGLVNGWNAKVAELTGLPVGEAMGMSLV 549

Query: 665 DEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNV 724
            ++V E+S   VE ++  AL GEE+KNVE+ L+ F  QK+   V ++VNAC+SRD+ +N+
Sbjct: 550 QDLVFEQSVERVEKMLHNALRGEEEKNVEMMLKTFGPQKEKEAVILVVNACSSRDFTDNI 609

Query: 725 KGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKV 784
            GVCFVGQD+T +KV+MDKFIR+QGDY +I+QS NPLIPPIFASDE ACCSEWNAAMEKV
Sbjct: 610 VGVCFVGQDVTSQKVVMDKFIRIQGDYRSIVQSPNPLIPPIFASDEYACCSEWNAAMEKV 669

Query: 785 TGWMRHEVIG------------------------------ITGQGTENFPFGFFNRQGQF 814
           TGW   EVIG                              I GQ  E FPF FF++QG++
Sbjct: 670 TGWTHDEVIGKMLVGEIFGGCCRLKGQDAVTKFTIVLHSAIDGQEIEKFPFAFFDKQGKY 729

Query: 815 VEVALTA 821
           VE  LTA
Sbjct: 730 VEALLTA 736


>gi|359806634|ref|NP_001241532.1| phytochrome type A-like [Glycine max]
 gi|190586157|gb|ACE79195.1| phytochrome A-1 [Glycine max]
 gi|207367150|dbj|BAG72095.1| phytochrome A [Glycine max]
 gi|371940264|dbj|BAL45569.1| Phytochrome A2 [Glycine max]
          Length = 1123

 Score = 1031 bits (2667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/1096 (47%), Positives = 723/1096 (65%), Gaps = 60/1096 (5%)

Query: 43   NADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ----ITAYLSKIQRGGLIQPFGC 98
              DA L A FE+S +S    +  R +    +GV + +     TAYL  +Q+G +IQPFGC
Sbjct: 27   TVDAKLHATFEESGSSFDYSSSVR-ISGTADGVNQPRHDKVTTAYLHHMQKGKMIQPFGC 85

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
            +LA++E T ++I YSEN  EML + S +     D    G IG D +TLFT PS ++L KA
Sbjct: 86   LLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALG-IGTDIKTLFTAPSASALQKA 144

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
                E+ LLNP+L+H  +    KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS K
Sbjct: 145  LGFAEVLLLNPVLIHCKTSG--KPFYAIIHRVTGSMIIDFEPVKPYEVPMTAAGALQSYK 202

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FH+DDHGEV++EI +  LE
Sbjct: 203  LAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLE 262

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PYLG+H+PA DIPQA+RFLF +N+VRMI DCHA  V V+Q ++L   L L  STLR+PH 
Sbjct: 263  PYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVRVLQDEKLPFDLTLCGSTLRAPHS 322

Query: 335  CHLQYMTNMGSIASLVMAVIINSKDS------------MKLWGLVVCHHTSPRYIPFPLR 382
            CH QYM NM SIASLVMAV++N  +              +LWGLVVCH+T+PR++PFPLR
Sbjct: 323  CHAQYMANMDSIASLVMAVVVNDNEEDGDTDAIQPQKRKRLWGLVVCHNTTPRFVPFPLR 382

Query: 383  YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
            YACEFL Q F++ +  E+++  Q+ EKNILRTQ LLCD+++RDAP  IV++SP+IMDLVK
Sbjct: 383  YACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDLVMRDAPLGIVSESPNIMDLVK 442

Query: 443  CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
            CDGAAL Y  + W +GVTP+ESQ+++IA+WL   H D TG STDSL++AG+P A  LG  
Sbjct: 443  CDGAALIYKNKVWRLGVTPSESQIREIAFWLSEYHMDSTGFSTDSLSDAGFPSALSLGDV 502

Query: 503  VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
            VCGMA  R+T+KD +FWFRSHTA E++WGGAKH    KD+G +MHPRSSFK FL+VVK R
Sbjct: 503  VCGMAAVRVTAKDVVFWFRSHTAAEIRWGGAKHEAGEKDDGRRMHPRSSFKVFLDVVKAR 562

Query: 563  SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVR 622
            S PW+  EI+A+HSLQ+++R++F++ E  + +    NT+ +  K++G+ EL +V  E+VR
Sbjct: 563  SLPWKEYEIDAMHSLQLILRNAFKDTESMDLNTKAINTRLSDLKIEGMQELEAVTSEIVR 622

Query: 623  LIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICR 682
            LIETAT PI  VD  G +NGWN K+AELTGLP  EAMGK L+  +V + S   V+ ++  
Sbjct: 623  LIETATVPILAVDVDGLVNGWNIKIAELTGLPVGEAMGKHLLT-LVEDSSTDRVKKMLNL 681

Query: 683  ALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742
            ALLGEE+KNV+ +++    +     + ++VNAC SRD ++NV GVCFV  DIT +K +MD
Sbjct: 682  ALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMD 741

Query: 743  KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI--------- 793
            KF R++GDY+AI+Q+ NPLIPPIF +DE   C EWN AM K+TGW R EV+         
Sbjct: 742  KFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGELF 801

Query: 794  ------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEG 829
                                     +TG  TE  PFGFF R G++VE  L+ S++ D EG
Sbjct: 802  GTHMAACRLKNQEAFVNLGVVLNKAMTGLETEKVPFGFFARNGKYVECLLSVSKKLDVEG 861

Query: 830  KVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLES 889
             V G FCF+Q+  P+LQ AL  Q L +     ++  L+Y++++++NPL GI F  K+LE 
Sbjct: 862  LVTGVFCFLQLASPELQQALHIQRLSEQTALKRLNALSYMKRQIRNPLCGIIFSRKMLEG 921

Query: 890  SSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMV 949
            +++   Q+Q L TS  C++Q+  I+D  DL  I +G ++L+  EF L  +L   +SQVM 
Sbjct: 922  TALGTEQKQLLRTSAQCQQQLSKILDDSDLDSIIDGYLDLEMAEFTLHEVLVTSLSQVMT 981

Query: 950  LLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLK 1009
                K++ +++D+ E+I   +L GD +RLQ VL+DFL   +   P+    V    L   +
Sbjct: 982  KSNGKSIRIVNDVAEQIVMETLYGDSLRLQQVLADFLLISINFTPNGGQVVVAGTLTKEQ 1041

Query: 1010 LIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVR 1069
            L K     V ++  +TH G G+P  L+  M+ G N   + EG+ L +SRKLL +MNG VR
Sbjct: 1042 LGKSV-HLVKLELSITHGGSGVPEALLNQMF-GNNGLESEEGISLLISRKLLKLMNGDVR 1099

Query: 1070 YVRENSKCYFVIDLEL 1085
            Y+RE  K  F++  EL
Sbjct: 1100 YLREAGKSAFILSAEL 1115


>gi|297801114|ref|XP_002868441.1| hypothetical protein ARALYDRAFT_493637 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297314277|gb|EFH44700.1| hypothetical protein ARALYDRAFT_493637 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1112

 Score = 1031 bits (2666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1096 (48%), Positives = 728/1096 (66%), Gaps = 67/1096 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEGVPEEQ----ITAYLSKIQRGGLIQPFGCM 99
            DA L   FE+S    + F+YS S+ ++ P     E     ++ YL KIQRG LIQPFGC+
Sbjct: 26   DAKLHTNFEES---ERLFDYSASINLNMPSSSSCEIPSSAVSTYLQKIQRGMLIQPFGCL 82

Query: 100  LAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAA 155
            + V+E   ++I +SEN  EML L   +    E  E    IG D ++LF  P  ++L KA 
Sbjct: 83   IVVDEKNLKVIAFSENTQEMLGLTPHTVPSMEQREALS-IGTDVKSLFQSPGCSALQKAV 141

Query: 156  ASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKL 215
               EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KL
Sbjct: 142  DFGEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKL 199

Query: 216  AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP 275
            A  +ISRLQALPGG++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R DLEP
Sbjct: 200  AAISISRLQALPGGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDLEP 259

Query: 276  YLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGC 335
            YLG+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGC
Sbjct: 260  YLGLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGC 319

Query: 336  HLQYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYAC 385
            H QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYAC
Sbjct: 320  HAQYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFLPFPLRYAC 379

Query: 386  EFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDG 445
            EFL Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDG
Sbjct: 380  EFLTQVFGVQVNKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDG 439

Query: 446  AALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCG 505
            AALYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CG
Sbjct: 440  AALYYREKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICG 499

Query: 506  MATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFP 565
            MA   IT KDFLFWFRS TAK+++WGGA+H P  +D G +MHPRSSFKAF+E+V+ +S P
Sbjct: 500  MAAVYITDKDFLFWFRSGTAKQIQWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSMP 558

Query: 566  WEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
            W+  E++AI+SLQ++++ S Q    +  SK   N     +++Q VDEL  +  EMVRLI+
Sbjct: 559  WDDMEMDAINSLQLIIKGSLQ----DEHSKTVVNVPFVDNRVQKVDELCVIVNEMVRLID 614

Query: 626  TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
            TA  PIF VD+SG INGWN+K AE++GL   +A+GK + D +V ++S   V+N++  AL 
Sbjct: 615  TAAVPIFAVDASGVINGWNSKAAEVSGLAIEQAIGKPVSD-LVEDDSAETVKNMLALALE 673

Query: 686  GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
            G E++   +++R F  +++ S + ++VN C SRD  NNV GVCF+GQD+T +K L++ + 
Sbjct: 674  GSEERGAAIRIRAFGPKRKSSPIELVVNTCCSRDRTNNVLGVCFIGQDVTGQKTLIENYS 733

Query: 746  RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
            R+QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+            
Sbjct: 734  RVQGDYARIMWSPSTLIPPIFMTNENGLCSEWNNAMQKLSGIKREEVVNKLILGEVFTSD 793

Query: 795  ----------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKV 831
                                  I+GQ   E   FGF++R G F+E  L+A++RTD EGKV
Sbjct: 794  DYGCRLKDHDTLTKLRIGFNAVISGQKNIEKLLFGFYHRDGSFIEALLSANKRTDIEGKV 853

Query: 832  IGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSS 891
             G  CF+Q+  P+LQ AL+ Q + +  I     +LAY+RQEVKNP   I F+  LL SS 
Sbjct: 854  TGVLCFLQVPSPELQYALQVQQVSEQVIACAFNKLAYLRQEVKNPEQAISFLQDLLHSSG 913

Query: 892  ISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLL 951
            +SE+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L 
Sbjct: 914  LSEDQKKLLRTSVLCREQLAKVIRDSDIDGIEEGYVELDCSEFNLEESLEAVVKQVMELS 973

Query: 952  RDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKL 1010
             ++ + ++ D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ 
Sbjct: 974  IERKVQIICDYPQEVLSMRLYGDNLRLQQILSETLLSSIRFTPALKGLCVSFKVIARIEA 1033

Query: 1011 IKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLL-IMMNGRVR 1069
            I    + V ++FR+ HP  G+P  L+ +M+    + T+ EGLGL +++KL+ +M  G +R
Sbjct: 1034 IGKRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLMERGTLR 1093

Query: 1070 YVRENSKCYFVIDLEL 1085
            Y+RE+    FVI  E 
Sbjct: 1094 YLRESEMSAFVILTEF 1109


>gi|371941942|gb|ACE79196.2| phytochrome A-2 [Glycine max]
          Length = 1130

 Score = 1031 bits (2666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1105 (47%), Positives = 724/1105 (65%), Gaps = 70/1105 (6%)

Query: 43   NADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ----ITAYLSKIQRGGLIQPFGC 98
              DA + A FE+S +S    +  R V    +GV + +     TAYL+++QRG +IQPFGC
Sbjct: 26   TVDAKIHATFEESGSSFDYSSSVR-VSGTADGVNQPRSDKVTTAYLNRMQRGKMIQPFGC 84

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
            +LA++E T ++I YSEN  EML + S +     D    G IG D +TLFT PS + L KA
Sbjct: 85   LLAIDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALG-IGTDIKTLFTAPSVSGLQKA 143

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
                ++SLLNPILVH  +    KPFYAI+HR+   +++D EP K  +  ++ AGA+QS K
Sbjct: 144  LGCADVSLLNPILVHCKTSG--KPFYAIVHRVTGSLIVDFEPVKPYEVPMTAAGALQSYK 201

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AI+RLQ+LP G++  LCDT+V++V +LTGYDRVM Y FH+DDHGEV++EI +  LE
Sbjct: 202  LAAKAITRLQSLPSGNMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLE 261

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PYLG+H+PA DIPQA+RFLF++N+VRMI DCHA  V V+Q ++L+  L L  STLR+PH 
Sbjct: 262  PYLGLHYPATDIPQASRFLFRKNKVRMIVDCHAKHVRVLQDEKLQFDLILCGSTLRAPHS 321

Query: 335  CHLQYMTNMGSIASLVMAVIINSKDS------------MKLWGLVVCHHTSPRYIPFPLR 382
            CH QYM NM SIASLV+AV++N  +              +LWGLVVCH+T+PR++PFPLR
Sbjct: 322  CHAQYMANMDSIASLVLAVVVNDNEEDGDTDAVQPQKRERLWGLVVCHNTTPRFVPFPLR 381

Query: 383  YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
            YACEFL Q F++ ++ E+++  Q+ EKNILRTQ LLC ML+RDAP  IV++SP+IMDLVK
Sbjct: 382  YACEFLAQVFAVHVHKEIELEYQIIEKNILRTQALLC-MLMRDAPLGIVSESPNIMDLVK 440

Query: 443  CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
            CDGAAL Y  + W +GVTP+E Q+++IA WL   H D TG STDSL +AG+P A  LG  
Sbjct: 441  CDGAALIYRNKVWRLGVTPSEPQIREIALWLSEYHMDSTGFSTDSLFDAGFPSALSLGDV 500

Query: 503  VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
            VCGMA+ R+T+KD +FWFRSHTA E++WGGAKH    KD+  +MHPRSSFKAFLEVVK R
Sbjct: 501  VCGMASVRVTAKDMVFWFRSHTAAEIRWGGAKHEAGEKDDSRRMHPRSSFKAFLEVVKAR 560

Query: 563  SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG-NTQQNGSKMQGVD--------EL 613
            S PW+  E++AIHSLQI++R++F+E  E  D   +  NT+ +  K++G++        EL
Sbjct: 561  SLPWKEYEMDAIHSLQIILRNAFKEDTESLDLNAKAINTRLSDLKIEGINDLKIERMQEL 620

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
             +V  E+VRLI+TAT PI  VD  G +NGWN K+AELTGLP  EA GK L+  +V + S 
Sbjct: 621  EAVTSEIVRLIDTATVPILAVDVDGLVNGWNIKIAELTGLPIGEATGKHLL-TLVEDSST 679

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733
              V+ ++  ALLGEE+KNV+ +++    +     + ++VNAC SRD ++NV GVCFV  D
Sbjct: 680  DRVKKMLNLALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHD 739

Query: 734  ITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI 793
            IT +K +MDKFIR++GDY+AI+Q+ NPLIPPIF +DE   C EWN AM K+TGW R EV+
Sbjct: 740  ITAQKNVMDKFIRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMMKLTGWKREEVM 799

Query: 794  ---------------------------------GITGQGTENFPFGFFNRQGQFVEVALT 820
                                              +TG  TE  PFGFF R G++VE  L+
Sbjct: 800  DKMLLGEIFGTQMAACRLKNQEAFVNLGVVLNKAMTGSETEKVPFGFFARNGKYVECLLS 859

Query: 821  ASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGI 880
             S++ D EG V G FCF+Q+  P+LQ AL  Q L +     ++  L+Y++++++NPL GI
Sbjct: 860  VSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEQTASKRLNALSYMKRQIRNPLCGI 919

Query: 881  RFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNIL 940
             F  K+LE + +   Q+Q L TS  C++Q+  I+D  DL  I +G ++L+  EF L  +L
Sbjct: 920  VFSRKMLEGTDLGTEQKQLLRTSAQCQQQLSKILDDSDLDTIIDGYLDLEMAEFTLHEVL 979

Query: 941  DAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWV 1000
               +SQVM     K++ +++D+   I   +L GD +RLQ VL+DFL   +   P+    V
Sbjct: 980  VTSLSQVMTKSNGKSIRIVNDVAGHIMMETLYGDSLRLQQVLADFLLISINFTPNGGQVV 1039

Query: 1001 EIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKL 1060
                L   +L K     V ++  +TH G G+P  L+  M+ G N   + EG+ L +SRKL
Sbjct: 1040 VAGSLTKEQLGKSV-HLVKLELSITHGGSGVPEVLLNQMF-GNNGLESEEGISLLISRKL 1097

Query: 1061 LIMMNGRVRYVRENSKCYFVIDLEL 1085
            L +MNG VRY+RE  K  F++  EL
Sbjct: 1098 LKLMNGDVRYLREAGKSAFILSAEL 1122


>gi|207367148|dbj|BAG72094.1| phytochrome A [Glycine max]
 gi|371940222|dbj|BAL45548.1| Phytochrome A1 [Glycine max]
 gi|371940224|dbj|BAL45549.1| Phytochrome A1 [Glycine soja]
 gi|371940226|dbj|BAL45550.1| Phytochrome A1 [Glycine soja]
 gi|371940228|dbj|BAL45551.1| Phytochrome A1 [Glycine soja]
 gi|371940230|dbj|BAL45552.1| Phytochrome A1 [Glycine soja]
 gi|371940232|dbj|BAL45553.1| Phytochrome A1 [Glycine soja]
 gi|371940234|dbj|BAL45554.1| Phytochrome A1 [Glycine soja]
 gi|371940236|dbj|BAL45555.1| Phytochrome A1 [Glycine soja]
 gi|371940238|dbj|BAL45556.1| Phytochrome A1 [Glycine max]
 gi|371940240|dbj|BAL45557.1| Phytochrome A1 [Glycine max]
 gi|371940242|dbj|BAL45558.1| Phytochrome A1 [Glycine max]
          Length = 1130

 Score = 1030 bits (2662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1105 (47%), Positives = 723/1105 (65%), Gaps = 70/1105 (6%)

Query: 43   NADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ----ITAYLSKIQRGGLIQPFGC 98
              DA + A FE+S +S    +  R V    +GV + +     TAYL+ +QRG +IQPFGC
Sbjct: 26   TVDAKIHATFEESGSSFDYSSSVR-VSGTADGVNQPRSDKVTTAYLNHMQRGKMIQPFGC 84

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
            +LA++E T ++I YSEN  EML + S +     D    G IG D +TLFT PS + L KA
Sbjct: 85   LLAIDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALG-IGTDIKTLFTAPSVSGLQKA 143

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
                ++SLLNPILVH  +    KPFYAI+HR+   +++D EP K  +  ++ AGA+QS K
Sbjct: 144  LGCADVSLLNPILVHCKTSG--KPFYAIVHRVTGSLIVDFEPVKPYEVPMTAAGALQSYK 201

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AI+RLQ+LP G++  LCDT+V++V +LTGYDRVM Y FH+DDHGEV++EI +  LE
Sbjct: 202  LAAKAITRLQSLPSGNMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLE 261

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PYLG+H+PA DIPQA+RFLF++N+VRMI DCHA  V V+Q ++L+  L L  STLR+PH 
Sbjct: 262  PYLGLHYPATDIPQASRFLFRKNKVRMIVDCHAKHVRVLQDEKLQFDLILCGSTLRAPHS 321

Query: 335  CHLQYMTNMGSIASLVMAVIINSKDS------------MKLWGLVVCHHTSPRYIPFPLR 382
            CH QYM NM SIASLV+AV++N  +              +LWGLVVCH+T+PR++PFPLR
Sbjct: 322  CHAQYMANMDSIASLVLAVVVNDNEEDGDTDAVQPQKRERLWGLVVCHNTTPRFVPFPLR 381

Query: 383  YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
            YACEFL Q F++ ++ E+++  Q+ EKNILRTQ LLC ML+RDAP  IV++SP+IMDLVK
Sbjct: 382  YACEFLAQVFAVHVHKEIELEYQIIEKNILRTQALLC-MLMRDAPLGIVSESPNIMDLVK 440

Query: 443  CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
            CDGAAL Y  + W +GVTP+E Q+++IA WL   H D TG STDSL +AG+P A  LG  
Sbjct: 441  CDGAALIYRNKVWRLGVTPSEPQIREIALWLSEYHMDSTGFSTDSLFDAGFPSALSLGDV 500

Query: 503  VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
            VCGMA+ R+T+KD +FWFRSHTA E++WGGAKH    KD+  +MHPRSSFKAFLEVVK R
Sbjct: 501  VCGMASVRVTAKDMVFWFRSHTAAEIRWGGAKHEAGEKDDSRRMHPRSSFKAFLEVVKAR 560

Query: 563  SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG-NTQQNGSKMQGVD--------EL 613
            S PW+  E++AIHSLQI++R++F+E  E  D   +  NT+ +  K++G++        EL
Sbjct: 561  SLPWKEYEMDAIHSLQIILRNAFKEDTESLDLNAKAINTRLSDLKIEGINDLKIERMQEL 620

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
             +V  E+VRLI+TAT PI  VD  G +NGWN K+AELTGLP  EA GK L+  +V + S 
Sbjct: 621  EAVTSEIVRLIDTATVPILAVDVDGLVNGWNIKIAELTGLPIGEATGKHLL-TLVEDSST 679

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733
              V+ ++  ALLGEE+KNV+ +++    +     + ++VNAC SRD ++NV GVCFV  D
Sbjct: 680  DRVKKMLNLALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHD 739

Query: 734  ITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI 793
            IT +K +MDKFIR++GDY+AI+Q+ NPLIPPIF +DE   C EWN AM K+TGW R EV+
Sbjct: 740  ITAQKNVMDKFIRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMMKLTGWKREEVM 799

Query: 794  ---------------------------------GITGQGTENFPFGFFNRQGQFVEVALT 820
                                              +TG  TE  PFGFF R G++VE  L+
Sbjct: 800  DKMLLGEIFGTQMAACRLKNQEAFVNLGVVLNKAMTGSETEKVPFGFFARNGKYVECLLS 859

Query: 821  ASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGI 880
             S++ D EG V G FCF+Q+  P+LQ AL  Q L +     ++  L+Y++++++NPL GI
Sbjct: 860  VSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEQTASKRLNALSYMKRQIRNPLCGI 919

Query: 881  RFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNIL 940
             F  K+LE + +   Q+Q L TS  C++Q+  I+D  DL  I +G ++L+  EF L  +L
Sbjct: 920  VFSRKMLEGTDLGTEQKQLLRTSAQCQQQLSKILDDSDLDTIIDGYLDLEMAEFTLHEVL 979

Query: 941  DAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWV 1000
               +SQVM     K++ +++D+   I   +L GD +RLQ VL+DFL   +   P+    V
Sbjct: 980  VTSLSQVMTKSNGKSIRIVNDVAGHIMMETLYGDSLRLQQVLADFLLISINFTPNGGQVV 1039

Query: 1001 EIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKL 1060
                L   +L K     V ++  +TH G G+P  L+  M+ G N   + EG+ L +SRKL
Sbjct: 1040 VAGSLTKEQLGKSV-HLVKLELSITHGGSGVPEVLLNQMF-GNNGLESEEGISLLISRKL 1097

Query: 1061 LIMMNGRVRYVRENSKCYFVIDLEL 1085
            L +MNG VRY+RE  K  F++  EL
Sbjct: 1098 LKLMNGDVRYLREAGKSAFILSAEL 1122


>gi|1730565|sp|P55141.1|PHYA_PETCR RecName: Full=Phytochrome A
 gi|556667|emb|CAA53165.1| phytochrome A [Petroselinum crispum]
          Length = 1129

 Score = 1030 bits (2662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1110 (47%), Positives = 714/1110 (64%), Gaps = 71/1110 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-----ISPPEGVPEEQIT-AYLSKIQRGGLIQPFGC 98
            DA + A+FE+S   G SF+YS SV     +     +   ++T AYL  IQ+G LIQP GC
Sbjct: 28   DAKIHADFEES---GNSFDYSSSVRVTSAVGENSSIQSNKLTTAYLHHIQKGKLIQPVGC 84

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
            +LAV+E +F+I+ YSEN  EML + S +     +  + G IG D RT+FT PS A+L KA
Sbjct: 85   LLAVDEKSFKIMAYSENAPEMLTMVSHAVPSVGEHPVLG-IGTDVRTIFTAPSAAALQKA 143

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
                +I+LLNPILVH  +    KPFYAI HR+   ++ID EP K  +  ++ AGA+QS K
Sbjct: 144  VGFTDINLLNPILVHCKTSG--KPFYAIAHRVTGSLIIDFEPVKPYEVPMTAAGALQSYK 201

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  A++RLQALPGG +  LCDT+V++V +LTGYDRVM Y FHDDDHGEV +E+ +  LE
Sbjct: 202  LASKAVNRLQALPGGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVTAEVTKPGLE 261

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PY G+H+PA D+PQAARFLF +N+VRMICDC A    V+Q ++L   L L  STLR+PH 
Sbjct: 262  PYFGLHYPATDVPQAARFLFLKNKVRMICDCRANSAPVLQDEKLPFELTLCGSTLRAPHS 321

Query: 335  CHLQYMTNMGSIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLR 382
            CHLQYM NM SIASLVMAV+IN  D            S KLWGLVVCH+TSPR++PFPLR
Sbjct: 322  CHLQYMENMNSIASLVMAVVINDSDEVVESSDRNSVKSKKLWGLVVCHNTSPRFVPFPLR 381

Query: 383  YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
            YACEFL Q F++ +  EL++  Q+ EKNILRTQ LLCD+L+RDAP  IV+QSP++MDLVK
Sbjct: 382  YACEFLAQVFAIHVSKELELENQIVEKNILRTQTLLCDLLMRDAPLGIVSQSPNMMDLVK 441

Query: 443  CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
            CDGAAL Y  + + +G TP++ QL+DI  WL   H D TGLSTDSL +AGYPGA  LG  
Sbjct: 442  CDGAALLYKNKVYRLGATPSDYQLRDIVSWLTEYHTDSTGLSTDSLYDAGYPGALALGDV 501

Query: 503  VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
            VCGMA  +ITS D LFWFRSH A  ++WGGAK  P+   +G KMHPRSSFKAFLEVVK R
Sbjct: 502  VCGMAVVKITSHDMLFWFRSHAAGHIRWGGAKAEPDENHDGRKMHPRSSFKAFLEVVKTR 561

Query: 563  SFPWEVSEINAIHSLQIVMRD--SFQEMEEENDSKVQGN-----TQQNGSKMQGVDELSS 615
            S  W+  E++AIHSLQ+++R   S ++       +++ N     T+ N  K++G+ EL +
Sbjct: 562  STTWKEFEMDAIHSLQLILRKALSVEKAVAAQGDEIRSNTDVIHTKLNDLKIEGIQELEA 621

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETAT PIF VD+   +NGWN K+AELTGLP  +AMGK L+  +V + S G 
Sbjct: 622  VTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDQAMGKHLL-TLVEDSSVGT 680

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V  L+  AL G+E++ +  + + +  ++    + ++VNAC +R   +NV GVCFV QD+T
Sbjct: 681  VVFLLALALQGKEEQGIPFEFKTYGSREDSVPITVVVNACATRGLHDNVVGVCFVAQDVT 740

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
             +K +MDKF R+QGDY+AI+Q+ NPLIPPIF +DE   CSEWN AM +++GW R +V+  
Sbjct: 741  SQKTIMDKFTRIQGDYKAIVQNPNPLIPPIFGTDEFGWCSEWNQAMTELSGWRREDVMNK 800

Query: 794  -------------------------------GITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            +TGQ +E   F FF   G++VE  L AS
Sbjct: 801  MLLGEIFGIQTSCCHLKSKEAFVNLGVVLNNALTGQISEKICFSFFATDGKYVECLLCAS 860

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            ++   EG V G FCF+Q+   +LQ AL  Q L +     ++K L+Y+R++ KNPL GI F
Sbjct: 861  KKLHGEGTVTGIFCFLQLASQELQQALHIQRLTEQTAMKRLKTLSYLRRQAKNPLCGINF 920

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
            V + LE   + E Q +   TS  C+R +  I+D  DL  I +G ++L+  EF L ++  A
Sbjct: 921  VREKLEEIGMGEEQTKLFRTSVHCQRHVNKILDDTDLDSIIDGYLDLEMSEFRLHDVYVA 980

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
              SQV +    K + ++ +  EE+ + +L GD +RLQ VL+DF+   V   P   G + I
Sbjct: 981  SRSQVSMRSNGKAIQVVDNFSEEMMSETLYGDSLRLQKVLADFMSVCVNLTPV-GGHLGI 1039

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
             V      +  + Q VH++FR+TH G G+P   +  M+ G +  T+ EG+ L +SRKL+ 
Sbjct: 1040 SVTLTEDNLGQSVQLVHLEFRITHTGAGVPEEAVSQMF-GSDSETSEEGISLLISRKLVK 1098

Query: 1063 MMNGRVRYVRENSKCYFVIDLELKTRGRQK 1092
            +MNG V Y+RE  K  F+I +EL    +++
Sbjct: 1099 LMNGDVHYLREAGKSTFIITVELAAASKRE 1128


>gi|38037178|gb|AAR08425.1| phytochrome A [Cuscuta pentagona]
          Length = 1119

 Score = 1027 bits (2655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1105 (48%), Positives = 724/1105 (65%), Gaps = 72/1105 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV----ISPPEGVP--EEQITAYLSKIQRGG 91
            II   + DA L AEFE+S   G SF+YS S+    ++  E  P  ++  TAYL +IQ+  
Sbjct: 22   IIAQTSIDAKLHAEFEES---GDSFDYSSSIRVTSVNTGEQKPRSDKVTTAYLHQIQKAK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
             IQPFGC+LA++E TFR+I +SEN  +ML + S +     D  + G IG D RT+FT PS
Sbjct: 79   FIQPFGCLLALDEKTFRVIAFSENAPDMLTMVSHAVPSVGDLPVLG-IGTDIRTIFTAPS 137

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
            GA+L KA    E+SLLNPILVH  +    KPFYAI+HR+   +++D EP K  +  ++ A
Sbjct: 138  GAALQKALGFGEVSLLNPILVHCKTSG--KPFYAIVHRVTGSLIVDFEPVKPYEAPMTAA 195

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AI+RLQ+LP G +   CDT+V++V +LTGYDRVM Y FHDDDHGEVVSE
Sbjct: 196  GALQSYKLAAKAIARLQSLPSGSLERFCDTIVQEVFELTGYDRVMAYKFHDDDHGEVVSE 255

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  LEPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V V+Q ++L   L L  S
Sbjct: 256  ITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCQAKHVKVVQDEKLLFDLTLCGS 315

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSM------------KLWGLVVCHHTSPR 375
            TLR+PH CHLQYM NM SIASLVMA+++N  D              +LWGLVVCH+T+PR
Sbjct: 316  TLRAPHTCHLQYMENMNSIASLVMAIVVNDGDDEEEEERSGSGKRKRLWGLVVCHNTTPR 375

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIV--TQ 433
            ++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLCD+LLRDA   IV  +Q
Sbjct: 376  FVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDILLRDAVLGIVSQSQ 435

Query: 434  SPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGY 493
            SP++MDLVKCDGA L Y  +   +G+TPT+ QL+DI + L  +H D TGLSTDSL +AG+
Sbjct: 436  SPNMMDLVKCDGAVLLYKSKIHRLGITPTDFQLQDIVYRLNEHHMDSTGLSTDSLYDAGF 495

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGA  LG  +CGMA+ RI+ KD+LFWFRSHTA EV+WGG KH P   D+G KMHPRSSFK
Sbjct: 496  PGALSLG--LCGMASVRISEKDWLFWFRSHTASEVRWGGVKHEP---DDGRKMHPRSSFK 550

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLEVV+ RS PW+  E++ IHSLQ++MR++F    +   + V  + + N  ++ G+ EL
Sbjct: 551  AFLEVVETRSLPWKDYEMDGIHSLQLIMRNAFFNEADTVATNVI-HAKLNDLRIDGLQEL 609

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
             +V  EMVRLIETA  PI  V   G +NGWN K+AELTGL   EA+G  L+  +V + S 
Sbjct: 610  EAVTSEMVRLIETAMVPIIAVGVDGLVNGWNTKIAELTGLSVDEAIGNHLL-TLVEDSSV 668

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733
              V+ ++  AL GEE+KNV+ ++    ++ +   + ++VNAC SRD + +V GVCF+ QD
Sbjct: 669  HTVKKMLNLALQGEEEKNVQFEIMTHGIRSECGPISLVVNACASRDVQESVVGVCFIAQD 728

Query: 734  ITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI 793
            IT +K +MDKF R++GDY AIIQ+ NPLIPPIF +DE   CSEWN+AM K++GW R EVI
Sbjct: 729  ITGQKTVMDKFTRIEGDYRAIIQNPNPLIPPIFGTDEFGWCSEWNSAMTKLSGWRRDEVI 788

Query: 794  ---------------------------------GITGQGTENFPFGFFNRQGQFVEVALT 820
                                              ITG  ++   FGF  R G++VE  L+
Sbjct: 789  DKMVLGEVFGTQKACCRLKSHEAFVTLGVVLNNAITGHESDKTVFGFCTRNGKYVECLLS 848

Query: 821  ASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGI 880
             ++R + +G VIG FCF+Q+   +LQ AL  Q L +     ++K LAY+R++VKNPL+GI
Sbjct: 849  VTKRLNQDGAVIGLFCFLQLASQELQQALHFQKLSEQTATKRLKVLAYLRKQVKNPLSGI 908

Query: 881  RFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNIL 940
             F  K+LE + +  +Q+  L TS  C++Q+  ++D  DL CI EG ++L+  EF L  +L
Sbjct: 909  MFSRKMLEGTELGNDQQNILHTSAQCQQQLSKVLDDTDLDCIIEGYLDLEMVEFKLDEVL 968

Query: 941  DAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWV 1000
             A +SQVM     K+L +++D+ E +   +L GD +RLQ VL++FL   V   PS  G +
Sbjct: 969  LASISQVMTKSNGKSLRVINDVAENVLCETLYGDSLRLQQVLAEFLSVAVNFTPS-GGQL 1027

Query: 1001 EIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKL 1060
             +        +  + Q  H++FR+TH G G+P  L+  M+ G +     EG+ L +SR L
Sbjct: 1028 AVSSSLTKDHLGQSVQLAHLEFRVTHSGGGVPEELLTQMF-GSDVDALEEGISLLVSRNL 1086

Query: 1061 LIMMNGRVRYVRENSKCYFVIDLEL 1085
            + +MNG V+Y RE  +  F+I +EL
Sbjct: 1087 VKLMNGDVQYHREAGRSAFIISVEL 1111


>gi|371940220|dbj|BAL45547.1| Phytochrome A1 [Glycine max]
          Length = 1130

 Score = 1026 bits (2654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/1105 (47%), Positives = 722/1105 (65%), Gaps = 70/1105 (6%)

Query: 43   NADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ----ITAYLSKIQRGGLIQPFGC 98
              DA + A FE+S +S    +  R V    +GV + +     TAYL+ +QRG +IQPFGC
Sbjct: 26   TVDAKIHATFEESGSSFDYSSSVR-VSGTADGVNQPRSDKVTTAYLNHMQRGKMIQPFGC 84

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
            +LA++E T ++I YSEN  EML + S +     D    G IG D +TLFT PS + L KA
Sbjct: 85   LLAIDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALG-IGTDIKTLFTAPSVSGLQKA 143

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
                ++SLLNPILVH  +    KPFYAI+HR+   +++D EP K  +  ++ AGA+QS K
Sbjct: 144  LGCADVSLLNPILVHCKTSG--KPFYAIVHRVTGSLIVDFEPVKPYEVPMTAAGALQSYK 201

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AI+RLQ+LP G++  LCDT+V++V +LTGYDRVM Y FH+DDHGEV++EI +  LE
Sbjct: 202  LAAKAITRLQSLPSGNMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLE 261

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PYLG+H+PA DIPQA+RFLF++N+VRMI DCHA  V V+Q ++L+  L L  STLR+PH 
Sbjct: 262  PYLGLHYPATDIPQASRFLFRKNKVRMIVDCHAKHVRVLQDEKLQFDLILCGSTLRAPHS 321

Query: 335  CHLQYMTNMGSIASLVMAVIINSKDS------------MKLWGLVVCHHTSPRYIPFPLR 382
            CH QYM NM SIASLV+AV++N  +              +LWGLVVCH+T+PR++PFPLR
Sbjct: 322  CHAQYMANMDSIASLVLAVVVNDNEEDGDTDAVQPQKRERLWGLVVCHNTTPRFVPFPLR 381

Query: 383  YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
            YACEFL Q F++ ++ E+++  Q+ EKNILRTQ LLC ML+RDAP  IV++SP+IMDLVK
Sbjct: 382  YACEFLAQVFAVHVHKEIELEYQIIEKNILRTQALLC-MLMRDAPLGIVSESPNIMDLVK 440

Query: 443  CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
            CDGAAL Y  + W +GVTP+E Q+++IA WL   H D TG STDSL +AG+P A  LG  
Sbjct: 441  CDGAALIYRNKVWRLGVTPSEPQIREIALWLSEYHMDSTGFSTDSLFDAGFPSALSLGDV 500

Query: 503  VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
            VCGMA+ R+T+K  +FWFRSHTA E++WGGAKH    KD+  +MHPRSSFKAFLEVVK R
Sbjct: 501  VCGMASVRVTAKGMVFWFRSHTAAEIRWGGAKHEAGEKDDSRRMHPRSSFKAFLEVVKAR 560

Query: 563  SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG-NTQQNGSKMQGVD--------EL 613
            S PW+  E++AIHSLQI++R++F+E  E  D   +  NT+ +  K++G++        EL
Sbjct: 561  SLPWKEYEMDAIHSLQIILRNAFKEDTESLDLNAKAINTRLSDLKIEGINDLKIERMQEL 620

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
             +V  E+VRLI+TAT PI  VD  G +NGWN K+AELTGLP  EA GK L+  +V + S 
Sbjct: 621  EAVTSEIVRLIDTATVPILAVDVDGLVNGWNIKIAELTGLPIGEATGKHLL-TLVEDSST 679

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733
              V+ ++  ALLGEE+KNV+ +++    +     + ++VNAC SRD ++NV GVCFV  D
Sbjct: 680  DRVKKMLNLALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHD 739

Query: 734  ITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI 793
            IT +K +MDKFIR++GDY+AI+Q+ NPLIPPIF +DE   C EWN AM K+TGW R EV+
Sbjct: 740  ITAQKNVMDKFIRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMMKLTGWKREEVM 799

Query: 794  ---------------------------------GITGQGTENFPFGFFNRQGQFVEVALT 820
                                              +TG  TE  PFGFF R G++VE  L+
Sbjct: 800  DKMLLGEIFGTQMAACRLKNQEAFVNLGVVLNKAMTGSETEKVPFGFFARNGKYVECLLS 859

Query: 821  ASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGI 880
             S++ D EG V G FCF+Q+  P+LQ AL  Q L +     ++  L+Y++++++NPL GI
Sbjct: 860  VSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEQTASKRLNALSYMKRQIRNPLCGI 919

Query: 881  RFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNIL 940
             F  K+LE + +   Q+Q L TS  C++Q+  I+D  DL  I +G ++L+  EF L  +L
Sbjct: 920  VFSRKMLEGTDLGTEQKQLLRTSAQCQQQLSKILDDSDLDTIIDGYLDLEMAEFTLHEVL 979

Query: 941  DAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWV 1000
               +SQVM     K++ +++D+   I   +L GD +RLQ VL+DFL   +   P+    V
Sbjct: 980  VTSLSQVMTKSNGKSIRIVNDVAGHIMMETLYGDSLRLQQVLADFLLISINFTPNGGQVV 1039

Query: 1001 EIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKL 1060
                L   +L K     V ++  +TH G G+P  L+  M+ G N   + EG+ L +SRKL
Sbjct: 1040 VAGSLTKEQLGKSV-HLVKLELSITHGGSGVPEVLLNQMF-GNNGLESEEGISLLISRKL 1097

Query: 1061 LIMMNGRVRYVRENSKCYFVIDLEL 1085
            L +MNG VRY+RE  K  F++  EL
Sbjct: 1098 LKLMNGDVRYLREAGKSAFILSAEL 1122


>gi|33333476|gb|AAQ11871.1| phytochrome A1 [Stellaria longipes]
          Length = 1122

 Score = 1024 bits (2648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1112 (47%), Positives = 717/1112 (64%), Gaps = 74/1112 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGV-----PEEQITAYLSKIQRGGL 92
            II     DA   AEFE+S      F+YS SV     GV      ++  ++YL +IQ+G  
Sbjct: 22   IIAQTIQDAKFHAEFEES---SNEFDYSSSVRGSTSGVNQLPKSDKVTSSYLLQIQKGKF 78

Query: 93   IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
            IQPFGC+LA+++ TFR+I +SEN  EML + S +     D  + G IG D RT+FT PS 
Sbjct: 79   IQPFGCLLALDDKTFRVIAFSENAPEMLTMVSHAVPSVGDLPVIG-IGTDIRTIFTGPSA 137

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            ++L KA    ++SLLNPILVH  +    KPFYAI+HR+   +VID EP K  +  ++ AG
Sbjct: 138  SALQKALGFTDVSLLNPILVHCKNSG--KPFYAIVHRVTRSLVIDFEPVKPYEVPMTAAG 195

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AI+RLQ+LP G++  L DT+V++V +LTGYDRVM Y FHDDDHGEVVSE+
Sbjct: 196  ALQSYKLAAKAITRLQSLPSGNMVRLVDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEV 255

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             + +L+ YLG+H+PA DIPQAARFLF +N+VR+ICDC A  V V+Q ++L   L L  ST
Sbjct: 256  TKPNLDSYLGLHYPATDIPQAARFLFMKNKVRLICDCRAKNVRVVQDEKLSVDLTLCGST 315

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPR 375
            LR+PHGCH QYM NM SI SLVMAV++N +D               +LWGLVVCHHTSPR
Sbjct: 316  LRAPHGCHAQYMENMNSIGSLVMAVVVNDEDDEDGGSAPAQPHKRKRLWGLVVCHHTSPR 375

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
            ++PFPLRYACEFL Q F++ +  EL++  Q  EK ILRTQ LLCDML+RDAP  IVT SP
Sbjct: 376  FVPFPLRYACEFLAQVFAIHVNKELELENQFLEKKILRTQTLLCDMLIRDAPLGIVTHSP 435

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            +IMDLVKCDGAAL Y  + W +G TPT+ QL++I  WL  +H D TGLSTDSL +AGYP 
Sbjct: 436  NIMDLVKCDGAALLYNNKVWRLGSTPTDYQLQEIGGWLSRDHMDSTGLSTDSLYDAGYPA 495

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            A  LG +VCGMA   IT  D LFWF SHTA E+KWGGAKH    KD+G KMHPRSSFKAF
Sbjct: 496  ALELGDSVCGMAAVSITVNDMLFWFTSHTAAEIKWGGAKHEAGEKDDGSKMHPRSSFKAF 555

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +++ +  ++ G+ EL +
Sbjct: 556  LEVVKRRSVPWKDYEMDAIHSLQLILRNAFKDGEAADLNTSVIHSKISDLQISGLKELEA 615

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETAT PIF VDS G +NGWN K+ ELTG+P  EA+GK  I  +V + S   
Sbjct: 616  VTSEMVRLIETATVPIFAVDSDGLVNGWNTKIYELTGIPVEEAVGKH-IAALVEDSSIDN 674

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSV-----VYILVNACTSRDYKNNVKGVCFV 730
            V+ ++  AL GEE KNV+     FE+++ HS+     + ++VNAC S+D   NV GVC +
Sbjct: 675  VKQMLQSALQGEEKKNVQ-----FEVKRHHSIPDSGPISLIVNACASKDVNGNVVGVCLI 729

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
             QDIT +K +MDKF+R++GDY+AIIQS NPLIPPIF +DE   CSEWN AM K+TGW R 
Sbjct: 730  AQDITGQKTVMDKFLRIEGDYKAIIQSPNPLIPPIFGTDEFGWCSEWNPAMAKLTGWTRE 789

Query: 791  EVI---------------------------------GITGQGTENFPFGFFNRQGQFVEV 817
            EVI                                  ++GQ  E    GFF R G+++E 
Sbjct: 790  EVIDKMLLGEVFGMHKSCCRLKNQEAFVNLGVLLNGAMSGQNIEKLSIGFFTRSGKYIEC 849

Query: 818  ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPL 877
             L  +++ + EG V G FCF+Q+   DLQ AL  Q L +     +   LAY+++++KNPL
Sbjct: 850  LLCVNKKLNGEGDVTGVFCFLQLASHDLQHALHIQRLAEQAATKRANVLAYMKRQIKNPL 909

Query: 878  NGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLG 937
             GI F  K+L+ +++ E QR  L+TS  C+ Q+  I+D  DL  I +G  EL+  EF + 
Sbjct: 910  AGIIFSGKILDGTNVDEKQRLVLQTSARCQGQLNKILDDSDLDSIIDGYCELEMVEFAVQ 969

Query: 938  NILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPD 997
            +IL A +SQVM    +K + + ++  E     +L GD +RLQ +L+DFL   V    SP 
Sbjct: 970  DILVASISQVMAKSSEKGIQMSNNCTEHGFKETLYGDSLRLQQILADFLSISVNFT-SPG 1028

Query: 998  GWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLS 1057
            G + + V      I ++ Q  +++FR+ H G GI   L+ +M+  R    + +G+ L +S
Sbjct: 1029 GHIGVTVRLTKDKIGESVQLANLEFRIMHTGGGISEELLSEMFESRGN-ASEDGISLLIS 1087

Query: 1058 RKLLIMMNGRVRYVRENSKCYFVIDLELKTRG 1089
            RKL+ +MNG ++Y+R      F+I +EL   G
Sbjct: 1088 RKLVKLMNGDIQYLRSAGTSTFIISVELAVAG 1119


>gi|227452665|dbj|BAH57343.1| phytochrome A [Glycine max]
          Length = 1130

 Score = 1024 bits (2647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/1098 (47%), Positives = 720/1098 (65%), Gaps = 65/1098 (5%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSVISPPEGVP-------EEQITAYLSKIQRGGLIQPFG 97
            DA L A FE+S +S    +  R  +SP   V        +   ++YL + Q+  LIQPFG
Sbjct: 33   DAKLHATFEESGSSFDYSSSVR--MSPAGTVSGDHQPRSDRATSSYLHQTQKIKLIQPFG 90

Query: 98   CMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAK 153
            C+LA++E T ++I YSEN  EML + S +     D    G IG D RT+FT PS A++ K
Sbjct: 91   CLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALG-IGTDIRTIFTAPSSAAIQK 149

Query: 154  AAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQ 213
            A    ++SL NPILVH  +    KPFYAI+HR+   ++ID EP K  +  ++ +GA+QS 
Sbjct: 150  ALRFGDVSLHNPILVHCKTSG--KPFYAIIHRVTGSVIIDFEPVKPHEVPMTASGALQSY 207

Query: 214  KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL 273
            KLA  AI+RL++L  G++  LC+T+V +V +LTGYDRVM Y FH+DDHGEV++E++R  L
Sbjct: 208  KLAAKAITRLESLTTGNMETLCNTMVREVFELTGYDRVMAYKFHEDDHGEVIAEVKRPGL 267

Query: 274  EPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPH 333
            EPYLG+H+PA DIPQA RFLF +N+VRMI DC A  V V+Q K++   L L  STLR+ H
Sbjct: 268  EPYLGLHYPATDIPQATRFLFMKNKVRMIVDCCAKHVNVLQDKKIPFDLTLCGSTLRAAH 327

Query: 334  GCHLQYMTNMGSIASLVMAVIINSKD-------------SMKLWGLVVCHHTSPRYIPFP 380
             CHLQYM NM S ASLVMAV++N  D             S +LWGLVVCHHT+PR++PFP
Sbjct: 328  SCHLQYMENMNSSASLVMAVVVNDNDEDGDSSDAVQPQKSKRLWGLVVCHHTTPRFVPFP 387

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYAC+FL Q F++ +  EL++  Q+ EKNIL+TQ LLCDML++  P  IV+QSP+IMDL
Sbjct: 388  LRYACQFLAQVFAVHVSKELEIEYQIIEKNILQTQTLLCDMLVQGEPLGIVSQSPNIMDL 447

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKCDGAAL Y  + W +GVTP+ESQ+K+IA WL   H D TG  TDSL++AG+PGAA LG
Sbjct: 448  VKCDGAALLYKNKVWRLGVTPSESQIKEIALWLFECHEDSTGFCTDSLSDAGFPGAAALG 507

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
               CGMA ARI SKD LFWFRSHTA E++WGGAKH P  +D+G ++HPRSSFKAFLEVVK
Sbjct: 508  DIACGMAAARIASKDILFWFRSHTASEIRWGGAKHEPGERDDGRRVHPRSSFKAFLEVVK 567

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
             RS PW+  E +AIHSLQ+++RD+F+E +    S    +T+    K++G+ EL +V  E+
Sbjct: 568  TRSLPWKTYETDAIHSLQLILRDAFKETQSMEISTYAIDTRLGDLKIEGMQELDAVTSEV 627

Query: 621  VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
            VRLIETAT PI  VD +G INGWN K+AELTGLP  EA+GK L+  +V + S   V+ ++
Sbjct: 628  VRLIETATVPILAVDVNGMINGWNTKIAELTGLPVDEAIGKHLL-TLVEDFSVDRVKKML 686

Query: 681  CRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVL 740
              AL GEE++NV+ +++   ++     + ++VNAC SRD ++NV GVCF+ QDIT +K +
Sbjct: 687  DMALQGEEERNVQFEIQTHHMKIDSGPISLVVNACASRDLQDNVVGVCFLAQDITAQKTM 746

Query: 741  MDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------- 793
            MDKF R++GDY+AI+Q+ NPLIPPIF +DE   C EWN+AM K+TGW R EV+       
Sbjct: 747  MDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNSAMAKLTGWKREEVMDKMLLGE 806

Query: 794  --------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       + G  TE  PFGFF R G+ VE  L+ +++ DA
Sbjct: 807  VFGTQIACCRLRNHEAVVNFSIVLNTAMAGLETEKVPFGFFARDGKHVECILSMTKKLDA 866

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            EG V G FCF+Q+   +LQ AL  Q + +     ++K+L Y++++++NPL GI F  KLL
Sbjct: 867  EGVVTGVFCFLQLASAELQQALHIQRISEQTSLKRLKDLTYLKRQIQNPLYGIMFSRKLL 926

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E + +   Q+Q+L+T   C+RQI  I+D  DL  I +G M+L+  EF L  +L A +SQV
Sbjct: 927  EGTELGAEQKQFLQTGIRCQRQISKILDDSDLDSIIDGYMDLEMVEFTLHEVLVASLSQV 986

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M     K + +++D+ E+I   +L GD IRLQ VL+DFL   +   P+  G V +     
Sbjct: 987  MTKSNAKGIRVVNDVEEKITTETLYGDSIRLQQVLADFLLISINFTPT-GGQVVVAATLT 1045

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
             + ++      +++F +TH   G+P  L+  M+ GR+   + EG+ + +SRKLL +MNG 
Sbjct: 1046 QQQLRKLVHLANLEFSITHDSFGVPETLLNQMF-GRDGHESEEGISMLISRKLLKLMNGD 1104

Query: 1068 VRYVRENSKCYFVIDLEL 1085
            VRY+RE  K  F++ +EL
Sbjct: 1105 VRYLREAGKSSFILSVEL 1122


>gi|356572880|ref|XP_003554593.1| PREDICTED: phytochrome type A-like [Glycine max]
 gi|227452663|dbj|BAH57342.1| phytochrome A [Glycine max]
 gi|227452667|dbj|BAH57344.1| phytochrome A [Glycine max]
          Length = 1130

 Score = 1022 bits (2643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1098 (47%), Positives = 719/1098 (65%), Gaps = 65/1098 (5%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSVISPPEGVP-------EEQITAYLSKIQRGGLIQPFG 97
            DA L A FE+S +S    +  R  +SP   V        +   ++YL + Q+  LIQPFG
Sbjct: 33   DAKLHATFEESGSSFDYSSSVR--MSPAGTVSGDHQPRSDRATSSYLHQTQKIKLIQPFG 90

Query: 98   CMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAK 153
            C+LA++E T ++I YSEN  EML + S +     D    G IG D RT+FT PS A++ K
Sbjct: 91   CLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALG-IGTDIRTIFTAPSSAAIQK 149

Query: 154  AAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQ 213
            A    ++SL NPILVH  +    KPFYAI+HR+   ++ID EP K  +  ++ +GA+QS 
Sbjct: 150  ALRFGDVSLHNPILVHCKTSG--KPFYAIIHRVTGSVIIDFEPVKPHEVPMTASGALQSY 207

Query: 214  KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL 273
            KLA  AI+RL++L  G++  LC+T+V +V +LTGYDRVM Y FH+DDHGEV++E++R  L
Sbjct: 208  KLAAKAITRLESLTTGNMETLCNTMVREVFELTGYDRVMAYKFHEDDHGEVIAEVKRPGL 267

Query: 274  EPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPH 333
            EPYLG+H+PA DIPQA RFLF +N+VRMI DC A  V V+Q K++   L L  STLR+ H
Sbjct: 268  EPYLGLHYPATDIPQATRFLFMKNKVRMIVDCCAKHVNVLQDKKIPFDLTLCGSTLRAAH 327

Query: 334  GCHLQYMTNMGSIASLVMAVIINSKD-------------SMKLWGLVVCHHTSPRYIPFP 380
             CHLQYM NM S ASLVMAV++N  D             S +LWGLVVCHHT+PR++PFP
Sbjct: 328  SCHLQYMENMNSSASLVMAVVVNDNDEDGDSSDAVQPQKSKRLWGLVVCHHTTPRFVPFP 387

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYAC+FL Q F++ +  EL++  Q+ EKNIL+TQ LLCDML++  P  IV+QSP+IMDL
Sbjct: 388  LRYACQFLAQVFAVHVSKELEIEYQIIEKNILQTQTLLCDMLVQGEPLGIVSQSPNIMDL 447

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKCDGAAL Y  + W +GVTP+ESQ+K+IA WL   H D TG  TDSL++AG+PGAA LG
Sbjct: 448  VKCDGAALLYKNKVWRLGVTPSESQIKEIALWLFECHEDSTGFCTDSLSDAGFPGAAALG 507

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
               CGMA ARI SKD LFWFRSHTA E++WGGAKH P  +D+G ++HPRSSFKAFLEVVK
Sbjct: 508  DIACGMAAARIASKDILFWFRSHTASEIRWGGAKHEPGERDDGRRVHPRSSFKAFLEVVK 567

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
             RS PW+  E +AIHSLQ+++RD+F+E +    S    +T+    K++G+ EL +V  E+
Sbjct: 568  TRSLPWKTYETDAIHSLQLILRDAFKETQSMEISTYAIDTRLGDLKIEGMQELDAVTSEV 627

Query: 621  VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
            VRLIETAT PI  VD +G INGWN K+AELTGLP  EA+GK L+  +V + S   V+ ++
Sbjct: 628  VRLIETATVPILAVDVNGMINGWNTKIAELTGLPVDEAIGKHLL-TLVEDFSVDRVKKML 686

Query: 681  CRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVL 740
              AL GEE++NV+ +++   ++     + ++VNAC SRD ++NV GVCF+ QDIT +K +
Sbjct: 687  DMALQGEEERNVQFEIQTHHMKIDSGPISLVVNACASRDLQDNVVGVCFLAQDITAQKTM 746

Query: 741  MDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------- 793
            MDKF R++GDY+AI+Q+ NPLIPPIF +DE   C EWN+AM K+TGW R EV+       
Sbjct: 747  MDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNSAMAKLTGWKREEVMDKMLLGE 806

Query: 794  --------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       + G  TE  PFGFF R G+ VE  L+ +++ DA
Sbjct: 807  VFGTQIACCRLRNHEAVVNFSIVLNTAMAGLETEKVPFGFFARDGKHVECILSMTKKLDA 866

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            EG V G FCF+Q+   +LQ AL  Q + +     ++K+L Y++++++NPL GI F  KLL
Sbjct: 867  EGVVTGVFCFLQLASAELQQALHIQRISEQTSLKRLKDLTYLKRQIQNPLYGIMFSRKLL 926

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E + +   Q+Q+L+T   C+RQI  I+D  DL  I +G M+L+  EF L  +L A +SQV
Sbjct: 927  EGTELGAEQKQFLQTGIRCQRQISKILDDSDLDSIIDGYMDLEMVEFTLHEVLVASLSQV 986

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007
            M     K + +++D+ E+I   +L GD IRLQ VL+DFL   +   P+    V    L  
Sbjct: 987  MTKSNAKGIRVVNDVEEKITTETLYGDSIRLQQVLADFLLISINFTPTGGQVVVAATLTQ 1046

Query: 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGR 1067
             +L K      +++F +TH   G+P  L+  M+ GR+   + EG+ + +SRKLL +MNG 
Sbjct: 1047 QQLGKLV-HLANLEFSITHDSFGVPETLLNQMF-GRDGHESEEGISMLISRKLLKLMNGD 1104

Query: 1068 VRYVRENSKCYFVIDLEL 1085
            VRY+RE  K  F++ +EL
Sbjct: 1105 VRYLREAGKSSFILSVEL 1122


>gi|3914343|sp|O49934.1|PHYA_POPTM RecName: Full=Phytochrome A
 gi|2664190|emb|CAA04679.1| phytochrome A [Populus tremula x Populus tremuloides]
          Length = 1125

 Score = 1022 bits (2642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/1106 (48%), Positives = 719/1106 (65%), Gaps = 70/1106 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVIS-----PPEGVPEEQITAYLSKIQRGGL 92
            II     DA L A+FE+S +S    +  R   S     PP    ++  TAYL  IQ+G L
Sbjct: 22   IIAQTTVDAKLHADFEESGSSFDYSSSVRVTDSVGGDQPPRS--DKVTTAYLHHIQKGKL 79

Query: 93   IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
            IQPFGC+LA++E TFR++ YSEN  E+L + S +     +  + G IG D RT+FT PS 
Sbjct: 80   IQPFGCLLALDEKTFRVVAYSENAPELLTMVSHAVPSVGEHPVLG-IGTDIRTIFTAPSA 138

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            ++L KA    ++SLLNPILVH  +    KPFYAI+HR+   ++ID EP K  +  ++ AG
Sbjct: 139  SALQKAMGFGDVSLLNPILVHCKTSG--KPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAG 196

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR M Y FHDDDHGEVVSE+
Sbjct: 197  ALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRAMAYKFHDDDHGEVVSEV 256

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             +  +EPYLG+H+PA DIPQA+RFLF +N+VRMI DCHA  V V+Q ++L   L L  ST
Sbjct: 257  TKPGMEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGST 316

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPR 375
            LR+PH CHLQYM NM SIASLVMAV++N  D               +LWGLVVCH+TSPR
Sbjct: 317  LRAPHSCHLQYMENMNSIASLVMAVVVNDGDEDGDTPDSANPQKRKRLWGLVVCHNTSPR 376

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
            ++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLCDML+RDAP  IVTQSP
Sbjct: 377  FVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSP 436

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            +IMDLVKCDGA L+Y  + W +G+TP++ QL+DIA+WL   H D TGLSTDSL +AGYPG
Sbjct: 437  NIMDLVKCDGAVLFYRNKIWRLGITPSDLQLQDIAFWLSEYHMDSTGLSTDSLYDAGYPG 496

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            A  LG  VCGMA  RITSKD LFWFRS TA E++WGGAKH P  KD+G +MHPRSSFKAF
Sbjct: 497  ALALGDVVCGMAAVRITSKDMLFWFRSQTAAEIRWGGAKHEPGEKDDGRRMHPRSSFKAF 556

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK RS PW+  E++AIHSLQ+++R++F+++E  +      + + +  K++G+ EL +
Sbjct: 557  LEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDIETMDVDTKTIHARLSDLKIEGMQELEA 616

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETAT PI  VD  G +NGWN K++ELTGL   +A+GK L+  +V + S   
Sbjct: 617  VTSEMVRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAIGKHLL-TLVEDSSVDI 675

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+ ++  AL G+E++N++ +++    + +   + ++VNAC SRD   NV GVCFVGQDIT
Sbjct: 676  VKRMLFLALQGKEEQNIQFEIKTHGSKSECGPICLVVNACASRDLHENVVGVCFVGQDIT 735

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
             +K++MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN AM  +TGW R EV+  
Sbjct: 736  GQKMVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCSEWNPAMTNLTGWKREEVLDK 795

Query: 794  -------------------------------GITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            +TGQ +E   FGFF R G++VE  L  S
Sbjct: 796  MLLGEVFGLNMACCRLKNQEAFVNLGVVLNTAMTGQESEKVSFGFFARTGKYVECLLCVS 855

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            ++ D EG V G FCF+Q+   +LQ AL  Q L +     ++K LAY+++++ NPL+GI F
Sbjct: 856  KKLDREGAVTGVFCFLQLASQELQQALHVQRLSEQTALKRLKALAYLKKQIWNPLSGIIF 915

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              K++E + +   Q++ L TS  C+ Q+  I+D  DL  I EG ++L+  EF L      
Sbjct: 916  SGKMMEGTELGAEQKELLHTSAQCQCQLSKILDDSDLDSIIEGYLDLEMVEFTLREYYGC 975

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
              S       +K + +++D  +   A +L GD IRLQ VL+DF  C +   PS  G +  
Sbjct: 976  YQSS-HDEKHEKGIPIINDALK--MAETLYGDSIRLQQVLADFCRCQLILTPS--GGLLT 1030

Query: 1003 KVLPGLKLIKDADQFVHV---QFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRK 1059
                  +    A  F+ V   + R+ H G GIP  L++ MY G +   + EG+ L +SRK
Sbjct: 1031 VSASFFQRPVGAILFILVHSGKLRIRHLGAGIPEALVDQMY-GEDTGASVEGISLVISRK 1089

Query: 1060 LLIMMNGRVRYVRENSKCYFVIDLEL 1085
            L+ +MNG VRY+RE  K  F+I +EL
Sbjct: 1090 LVKLMNGDVRYMREAGKSSFIISVEL 1115


>gi|38037208|gb|AAR08426.1| phytochrome A [Orobanche minor]
          Length = 1123

 Score = 1018 bits (2631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/1103 (47%), Positives = 719/1103 (65%), Gaps = 64/1103 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV--ISPPEGVPEEQ----ITAYLSKIQRGG 91
            II   + DA L A+FE+S   G SF+YS SV   + P G+ E +     TAYL +IQ+G 
Sbjct: 22   IIAQTSIDAKLDADFEES---GSSFDYSTSVRVTNYPAGLSEPRSDKVTTAYLHQIQKGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQ FGC+LA++E TFR+I YSEN  EML + S +     D  L G IG D RT+FT PS
Sbjct: 79   LIQQFGCLLALDEKTFRVIAYSENAPEMLTMVSHAVPSVGDHPLLG-IGSDIRTIFTAPS 137

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             A+L KA    E+SLLNPILVH  +    KPFYAI+HR+   ++ID EP K  +  ++ A
Sbjct: 138  AAALQKALGFGEVSLLNPILVHCKTSG--KPFYAIIHRVTGSLIIDFEPVKPHEVPMTAA 195

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AI+ LQALPGG I  LCDT+V+ V +LTGYDRVM+Y FH+DDHGEV +E
Sbjct: 196  GALQSYKLAAKAIACLQALPGGSIERLCDTMVQQVFELTGYDRVMIYKFHEDDHGEVFTE 255

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  LEPY+G+H+PA DIPQAARFLF +N+VRMICDC A  V V+Q   L   L L  S
Sbjct: 256  ITKPGLEPYVGLHYPATDIPQAARFLFMKNKVRMICDCRANHVKVVQDDNLPFDLTLCGS 315

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------MKLWGLVVCHHTSPR 375
            TLR+PHGCH QYM NM SIASLVM+V++N  D              +LWGLVVCH+T PR
Sbjct: 316  TLRAPHGCHSQYMENMNSIASLVMSVVVNEGDEDGPDSSSGPYKRKRLWGLVVCHNTCPR 375

Query: 376  YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
            +IPFPLRYACEFLVQ FS+ +  EL++  Q+ EKNILRTQ LLCD+LLRD P  IV+QSP
Sbjct: 376  FIPFPLRYACEFLVQVFSIHVNKELELENQMLEKNILRTQTLLCDLLLRDVPLGIVSQSP 435

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            ++MDLVKCDGA L +    + +G+TPT+ Q++DI  WL   H D TGLSTDSL +AG+PG
Sbjct: 436  NVMDLVKCDGAILLHKRTKYRLGLTPTDFQIRDIVSWLDEYHQDSTGLSTDSLYDAGFPG 495

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            A  LG A+CGMA  +IT +D+LFWFRSHTA E++WGGAKH  E KD+G KMHPRSSF+AF
Sbjct: 496  ALALGNALCGMAAVKITDEDWLFWFRSHTAAEIRWGGAKHELEAKDDGRKMHPRSSFRAF 555

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK RS PW+  E++ IHSLQ+++R++++E EE++    + + + N  ++ GV E+ +
Sbjct: 556  LEVVKTRSLPWKDYEMDGIHSLQLILRNAYKESEEKDLESREIHARLNELQIDGVKEIEA 615

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRLIETAT PIF V   G +NGWN K+++LTGL   EA+G   +  +V + S   
Sbjct: 616  VTSEMVRLIETATVPIFSVGVDGLVNGWNTKISDLTGLSVVEAIGMHFL-ALVEDSSADT 674

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V  ++  AL G+E+ +V+ +++    + +   + ++VNAC S+D K NV GVCF+ QDIT
Sbjct: 675  VSKMLGLALQGKEEHDVQFEIKTHGQRSESGPISLIVNACASKDVKENVVGVCFIAQDIT 734

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG- 794
             +K +MDKF R++GDY +IIQ+ NPLIPPIF +DE   CSEWNAAM K++GW R  VI  
Sbjct: 735  TQKSMMDKFTRIEGDYRSIIQNPNPLIPPIFGTDEFGWCSEWNAAMIKLSGWGREAVIDK 794

Query: 795  --------------------------------ITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            +TGQ +    FGFF+R G++V   L  S
Sbjct: 795  MLLGEVFGLNKACCRLKNQEAYVNLGVVLNNTVTGQESGKVSFGFFSRSGKYVACLLCVS 854

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            ++ D+EG V G FCF+Q+  P+LQ AL  Q + +     +++ LAYIR+E+++PL+GI F
Sbjct: 855  KKVDSEGSVTGLFCFLQLASPELQQALHIQRISEQTASKRLRVLAYIRREIRSPLSGIIF 914

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDA 942
              KL+E + +++ Q+  + TS  C+ Q+  I++  DL  I EG ++L+  EF L  +L A
Sbjct: 915  SRKLMEGTDLNDEQKNIVRTSLHCQSQMNKILEDTDLDHIIEGYLDLEMVEFKLHEVLIA 974

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
             +SQV+     K + ++ ++   +   +L GD +RLQ VL+ FL   V   PS  G + +
Sbjct: 975  SISQVISKSNGKGIKIVDNLAPNLSNETLYGDSLRLQQVLAAFLLIAVDSTPS-GGQLGV 1033

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
                    I +  Q   ++ R+TH G G+P  ++  M+       + +G+ L +SRKL+ 
Sbjct: 1034 AATLAKDSIGEFVQLGRLECRITHGG-GVPQEILNQMFGDEPTDASEDGISLFISRKLVK 1092

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
            +M G ++Y+RE  +  F+I +E+
Sbjct: 1093 LMKGDIQYLREAGRSTFIISVEI 1115


>gi|449458123|ref|XP_004146797.1| PREDICTED: phytochrome A-like [Cucumis sativus]
 gi|449527803|ref|XP_004170899.1| PREDICTED: phytochrome A-like [Cucumis sativus]
          Length = 1148

 Score = 1015 bits (2625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/1119 (47%), Positives = 722/1119 (64%), Gaps = 77/1119 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV---ISPPEGVPEEQITAYLSKIQRGGLIQ 94
            I+   + DA L + FEQS   G SF+YS S+    +P    P    TAYL +IQ   LIQ
Sbjct: 30   ILTQTSIDAKLQSHFEQS---GSSFDYSTSIHLTNNPTAAPPATTTTAYLQQIQISNLIQ 86

Query: 95   PFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL--IGIDARTLFTPPSGASL 151
            PFGC+LA+   T ++I +S+N  EML   + +  D + + L  IG D R +FT P+  +L
Sbjct: 87   PFGCLLALHPTTLKLIAFSQNAPEMLTTVAHTVPDGDNHPLLAIGTDLRGIFTAPTATAL 146

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             KA A  +++LLNPILVHS S    KPFYAILHR+   ++ID EP K     ++ AGA+Q
Sbjct: 147  LKALAFPDVTLLNPILVHSKSSG--KPFYAILHRVTGSLIIDFEPLKPDQVPVTAAGALQ 204

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            S KLA  AI+RLQALP G +  LCDT+V++V +LTGYDRVM Y FHDDDHGEV SE+ + 
Sbjct: 205  SYKLAAKAITRLQALPSGSLVRLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVFSEVTKP 264

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
             LEPYLG+H+PA DIPQAARFLF +N+VRMI DC A  V VIQ + L   L L  STLR+
Sbjct: 265  GLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDQNLDFDLTLCGSTLRA 324

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINSKDSM-------------------KLWGLVVCHHT 372
            PH CHLQYM NM SIASLVMA+++N ++                     +LWGLVVCH+T
Sbjct: 325  PHCCHLQYMENMDSIASLVMAIVVNEEEEEENFDQSNNNDASLQKHKRKRLWGLVVCHNT 384

Query: 373  SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVT 432
            +PR++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLCDML+RDAP  IV+
Sbjct: 385  TPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVS 444

Query: 433  QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
            ++P+IMDLVK DGAAL Y  + W +G+TPT+  L+DIA W+L  H D TGLSTDSL +AG
Sbjct: 445  RTPNIMDLVKSDGAALLYNNKVWRLGITPTDFHLQDIASWILEYHMDSTGLSTDSLYDAG 504

Query: 493  YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
            YPGA  LG  VCGMA  RI+S D +FWFRSHTA E++WGGAKH P  KD+G KMHPRSSF
Sbjct: 505  YPGALALGDVVCGMAAVRISSNDMIFWFRSHTASEIRWGGAKHEPGEKDDGRKMHPRSSF 564

Query: 553  KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVD- 611
            KAFLEVVK RS PW+  E++AIHSLQ+++R++F++ ++      + + Q   S ++ +D 
Sbjct: 565  KAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDRDDHMSEIHRKSIQTTLSDLKILDG 624

Query: 612  --ELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVH 669
              EL SV  EMVRLIETAT PI  VD  G +NGWN+K+AELTGL   +A+GK+L+  +V 
Sbjct: 625  RQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVDKAIGKNLL-TLVK 683

Query: 670  EESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCF 729
            + S   V+ ++  AL G+E+KNV+ +++   +      + ++VNAC S+D   NV GVCF
Sbjct: 684  DSSVEIVKKMLVLALQGQEEKNVQFEIKTHNVDINSGSISLIVNACASKDLSENVVGVCF 743

Query: 730  VGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMR 789
            V QDIT +K++MDKF +LQGDY+AI+Q+ NPLIPPIF  DE   C+EWN AM K++GW R
Sbjct: 744  VAQDITCQKIVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCTEWNLAMTKLSGWSR 803

Query: 790  HEVI--------------------------------------GITGQGTE-NFPFGFFNR 810
              V+                                       ++GQ  E N  FGF+ R
Sbjct: 804  ESVVNKMLLGEVFGTQLNNSSSCCCQLKNQEAFVNLGIVLNNAMSGQDPEKNISFGFYGR 863

Query: 811  QGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIR 870
             G FVE  L  ++  D +G VIG FCF+Q+   +LQ AL  Q L +     ++K L Y++
Sbjct: 864  NGMFVECLLCVNKILDRDGAVIGVFCFLQLASQELQQALSIQKLCERTASNRLKALGYMK 923

Query: 871  QEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIID-GMDLRCIEEGNMEL 929
            ++++NPL GI F  K+L+ + +   Q+Q L  S  C+RQI  ++D   DL  I +G +EL
Sbjct: 924  RQIQNPLCGIIFSRKMLQQTQLGVEQKQLLINSVNCQRQISKVLDESHDLDHIIQGVIEL 983

Query: 930  KSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCV 989
            +  EF L  +L   +SQVM+  + K + + +++ EEI   +L GD +R+Q +++DFL   
Sbjct: 984  EMVEFSLYEVLVVAISQVMMKSKGKGIQIENEVGEEIMCETLYGDNLRVQQIMADFLLIS 1043

Query: 990  VRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRN---QW 1046
            V +AP+    +           +++   +H++FR+T+ G GIP  L+ +M+   N   + 
Sbjct: 1044 VHYAPTGGQLMLSTTFTNKDHFRNSLHLLHLEFRITYVGGGIPESLLNEMFGNDNMDHED 1103

Query: 1047 TTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            ++ EG  L +SRKL+ MMNG VRYVRE +K  F+I L+L
Sbjct: 1104 SSEEGYSLFISRKLVKMMNGDVRYVREAAKSTFIITLQL 1142


>gi|37723871|gb|AAR02191.1| phytochrome A [Cyrtosia septentrionalis]
          Length = 1118

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/1108 (46%), Positives = 714/1108 (64%), Gaps = 73/1108 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFG 97
            II     DA L AEF+   A G  F+YS+S+ +PP+    E++TAYL  IQRG LIQPFG
Sbjct: 22   IIAQTTVDAKLDAEFD---AMGTCFDYSQSIRAPPDEQRSEKVTAYLQHIQRGKLIQPFG 78

Query: 98   CMLAVEEPTFRIIGYSENCLEMLDLRS---RSEDFELNGLIGIDARTLFTPPSGASLAKA 154
            C+LA++E TF+++ +SEN  EML + S    S       +IG D R LFT PS A+L KA
Sbjct: 79   CLLALDEKTFKVLAFSENAPEMLTMVSFTVPSVGDHPTIVIGTDVRNLFTSPSTAALQKA 138

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
                E+SLLNPILVH  S    +PFYAI+HR+   +++D EP K  D  ++ AGA+QS K
Sbjct: 139  LGFAEVSLLNPILVHCKSSG--RPFYAIVHRVTGCLIVDFEPVKPNDVPMTAAGALQSYK 196

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AIS+LQ+LP G +  LC+TV+E+V +LTGYDRVM+Y FH+DDHGEV +EI +  LE
Sbjct: 197  LAAKAISKLQSLPSGSMEKLCNTVIEEVFELTGYDRVMVYKFHEDDHGEVFAEITKPGLE 256

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
             Y G+H+PA DIPQAARFLF +N+VRMICDCHA  V V Q K+L   +    STLR+PH 
Sbjct: 257  SYFGLHYPATDIPQAARFLFMKNKVRMICDCHAKHVKVYQDKKLPFDISFCGSTLRAPHS 316

Query: 335  CHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHTSPRYIPF 379
            CHLQYM NM SIASLVMAV++N  +                 +LWGLVVCH+ SPR++PF
Sbjct: 317  CHLQYMENMNSIASLVMAVVVNEGEEDGGNEAEENSPPHRRKRLWGLVVCHNESPRFVPF 376

Query: 380  PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRD-APFSIVTQSPSIM 438
            PLRYACEFL+Q F++ +  E ++   + EK I+RTQ +LCDMLLR+  P  I+TQ+P+IM
Sbjct: 377  PLRYACEFLMQVFAIHVNKEFELENLVKEKKIMRTQTMLCDMLLREFVPLGIITQTPNIM 436

Query: 439  DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
            DLVKCDGAA  Y  + W +GVTP+E Q+ DI  WL   H D TGLSTD+L EAGYPG + 
Sbjct: 437  DLVKCDGAAFLYQDKIWRLGVTPSEPQIYDIVHWLSACHMDSTGLSTDNLHEAGYPGISS 496

Query: 499  LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
            LG  VCGMA ARITSKD LFWFRS  A  ++WGGAKH    KD+G +MHPRSSFKAFLEV
Sbjct: 497  LGDVVCGMAVARITSKDMLFWFRSPAAASIRWGGAKHDAADKDDGRRMHPRSSFKAFLEV 556

Query: 559  VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
             K RS PW   E+NAIHSLQ+++RD+   +E    +K   + Q N  K++G+ E+  V  
Sbjct: 557  AKVRSLPWGDHEMNAIHSLQLILRDTLNGIE----NKAIIDPQLNELKLEGMVEV--VTN 610

Query: 619  EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
            EMVRLIETAT PI  VD+ G INGWN K+A+LTGL   EA GK L+  +V + S   V+ 
Sbjct: 611  EMVRLIETATVPILAVDADGLINGWNMKIAQLTGLSDDEARGKHLL-TIVEDSSIDVVKR 669

Query: 679  LICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738
            ++  AL G E++NV+ +++   +++    + ++VNAC SRD  +NV G CFV QD+T +K
Sbjct: 670  MLLLALQGIEEQNVQFQVKTSGVRRDDGPLILVVNACVSRDIHSNVVGACFVAQDVTGQK 729

Query: 739  VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI----- 793
             ++DKF +++GDY+AI+Q+  PLIPPIF +DE   CSEWN AM K++GW R EV+     
Sbjct: 730  FILDKFTKIEGDYKAIVQNPCPLIPPIFGTDEFGWCSEWNLAMTKLSGWKRDEVMDKMLL 789

Query: 794  ----------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRT 825
                                          +GQ TE  PF F NR G+ V+  L+ SR+ 
Sbjct: 790  GEVFGINTSCCRMKSQDALVNFSILISNAFSGQETEKSPFSFMNRSGKHVDCLLSVSRKV 849

Query: 826  DAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHK 885
            D EG + G FCF+     +LQ   ++Q L   +   ++K LAYIR E++NPL+GI +  K
Sbjct: 850  DVEGNLTGIFCFVLATGHELQ---QSQPLVQQETVKRMKALAYIRNEIRNPLSGIMYTRK 906

Query: 886  LLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVS 945
            +L  +++ E Q   L T   C  Q+  I++ ++L  I    +EL+  EF L +++   VS
Sbjct: 907  MLVGTNLDEEQSLLLSTGAKCHNQLNRILEDLNLEDIMNSCLELEMNEFNLKDVVLTAVS 966

Query: 946  QVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVL 1005
            QVM+    K +++++D+P+ + +  + GD +RLQ + +DFL   V++  SPDG  ++++ 
Sbjct: 967  QVMLPSEGKGVNVVYDLPDGLLSEYVYGDSLRLQQIXADFLLVCVKY--SPDG-AQVEIT 1023

Query: 1006 PGLK--LIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIM 1063
              LK   +  + Q +HV+ R+TH G G+   L+ +M+ G  + T+ EG+ L + RKLL +
Sbjct: 1024 ANLKKNTLGKSLQLIHVEIRITHAGNGVAEELLSEMF-GSKEETSEEGMSLMVCRKLLRL 1082

Query: 1064 MNGRVRYVRENSKCYFVIDLELKTRGRQ 1091
            MNG V Y+RE +K  F++  EL    +Q
Sbjct: 1083 MNGDVCYLREANKSVFILSAELACASKQ 1110


>gi|108802811|gb|ABG21356.1| PHYTOCHROME C [Arabidopsis thaliana]
          Length = 1054

 Score = 1004 bits (2596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1040 (48%), Positives = 693/1040 (66%), Gaps = 63/1040 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS SV ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASVNLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LSD L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSDTLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIP 1032
               + V ++FR+ HP  G+P
Sbjct: 1035 KRMKRVELEFRIIHPAPGLP 1054


>gi|108802766|gb|ABG21334.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802768|gb|ABG21335.1| PHYTOCHROME C [Arabidopsis thaliana]
          Length = 1054

 Score = 1003 bits (2593), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1040 (48%), Positives = 693/1040 (66%), Gaps = 63/1040 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLV 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV+SE  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVISECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIP 1032
               + V ++FR+ HP  G+P
Sbjct: 1035 KRMKRVELEFRIIHPAPGLP 1054


>gi|108802772|gb|ABG21337.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802777|gb|ABG21339.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802779|gb|ABG21340.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802785|gb|ABG21343.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802787|gb|ABG21344.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802789|gb|ABG21345.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802791|gb|ABG21346.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802801|gb|ABG21351.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802813|gb|ABG21357.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802817|gb|ABG21359.1| PHYTOCHROME C [Arabidopsis thaliana]
          Length = 1054

 Score = 1003 bits (2592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1040 (48%), Positives = 693/1040 (66%), Gaps = 63/1040 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS SV ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASVNLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIP 1032
               + V ++FR+ HP  G+P
Sbjct: 1035 KRMKRVELEFRIIHPAPGLP 1054


>gi|108802783|gb|ABG21342.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802815|gb|ABG21358.1| PHYTOCHROME C [Arabidopsis thaliana]
          Length = 1054

 Score = 1002 bits (2591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1040 (48%), Positives = 693/1040 (66%), Gaps = 63/1040 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIP 1032
               + V ++FR+ HP  G+P
Sbjct: 1035 KRMKRVELEFRIIHPAPGLP 1054


>gi|108802821|gb|ABG21361.1| PHYTOCHROME C [Arabidopsis thaliana]
          Length = 1054

 Score = 1002 bits (2590), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1040 (48%), Positives = 693/1040 (66%), Gaps = 63/1040 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS SV ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASVNLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPIDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIP 1032
               + V ++FR+ HP  G+P
Sbjct: 1035 KRMKRVELEFRIIHPAPGLP 1054


>gi|108802823|gb|ABG21362.1| PHYTOCHROME C [Arabidopsis thaliana]
          Length = 1054

 Score = 1001 bits (2588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1040 (48%), Positives = 693/1040 (66%), Gaps = 63/1040 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELGCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSESLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIP 1032
               + V ++FR+ HP  G+P
Sbjct: 1035 KRMKRVELEFRIIHPAPGLP 1054


>gi|108802770|gb|ABG21336.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802775|gb|ABG21338.1| PHYTOCHROME C [Arabidopsis thaliana]
          Length = 1054

 Score = 1000 bits (2585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1040 (48%), Positives = 692/1040 (66%), Gaps = 63/1040 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LT YDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTSYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIP 1032
               + V ++FR+ HP  G+P
Sbjct: 1035 KRMKRVELEFRIIHPAPGLP 1054


>gi|108802807|gb|ABG21354.1| PHYTOCHROME C [Arabidopsis thaliana]
          Length = 1054

 Score = 1000 bits (2585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1040 (48%), Positives = 692/1040 (66%), Gaps = 63/1040 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALEKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY    W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDNLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               I+ KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYISEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKTLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            +GDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  KGDYARIMWSPSTLIPPIFITNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   E   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIEKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPALRGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIP 1032
               + V ++FR+ HP  G+P
Sbjct: 1035 KRMKRVKLEFRIIHPAPGLP 1054


>gi|108802793|gb|ABG21347.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802795|gb|ABG21348.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802799|gb|ABG21350.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802803|gb|ABG21352.1| PHYTOCHROME C [Arabidopsis thaliana]
 gi|108802805|gb|ABG21353.1| PHYTOCHROME C [Arabidopsis thaliana]
          Length = 1054

 Score =  999 bits (2584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1040 (48%), Positives = 692/1040 (66%), Gaps = 63/1040 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALEKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY    W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDNLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               I+ KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYISEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKTLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            +GDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  KGDYARIMWSPSTLIPPIFITNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   E   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIEKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPALRGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIP 1032
               + V ++FR+ HP  G+P
Sbjct: 1035 KRMKRVELEFRIIHPAPGLP 1054


>gi|83699543|gb|ABC40685.1| phytochrome B1 [Zea mays]
          Length = 783

 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/732 (66%), Positives = 584/732 (79%), Gaps = 24/732 (3%)

Query: 39  IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
           +  Y  DA L A FEQS ASG+SF+YS+S+ +PP    E+QI AYLS+IQRGG IQPFGC
Sbjct: 54  VAQYTLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSSEQQIAAYLSRIQRGGHIQPFGC 113

Query: 99  MLAV-EEPTFRIIGYSENCLEMLDLRSRSEDFELNGL------IGIDARTLFTPPSGASL 151
            LAV ++ +FR++ +SEN  ++LDL        L+        +G DAR LF+P S   L
Sbjct: 114 TLAVADDSSFRLLAFSENSPDLLDLSPHHSVPSLDSSAPPHVSLGADARLLFSPSSAVLL 173

Query: 152 AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
            +A A+REISLLNPI +HS  R   KPFYAILHRIDVG+VIDLEP+++ DPALS+AGAVQ
Sbjct: 174 ERAFAAREISLLNPIWIHS--RVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQ 231

Query: 212 SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
           SQKLAV AISRLQALPGGD+ LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E RR 
Sbjct: 232 SQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAESRRD 291

Query: 272 DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
           +LEPYLG+H+PA DIPQA+RFLF+QNRVRMI DCHA PV VIQ   L QPLCLV STLR+
Sbjct: 292 NLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGLSQPLCLVGSTLRA 351

Query: 332 PHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVCHHTSPRYIPF 379
           PHGCH QYM NMGSIASLVMAVII+S              +MKLWGLVVCHHTSPR IPF
Sbjct: 352 PHGCHAQYMANMGSIASLVMAVIISSGGDDEQTGRGGISSAMKLWGLVVCHHTSPRCIPF 411

Query: 380 PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
           PLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPSIMD
Sbjct: 412 PLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIMD 471

Query: 440 LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
           LVKCDGAALYY G+ + +GVTPTESQ+KDI  WL   HGD TGLSTDSLA+AGY GAA L
Sbjct: 472 LVKCDGAALYYHGKYYPLGVTPTESQIKDIIEWLTVFHGDSTGLSTDSLADAGYLGAAAL 531

Query: 500 GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
           G+AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVV
Sbjct: 532 GEAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVV 591

Query: 560 KNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSK--VQGNTQQNGSKMQGVDELSSV 616
           K+RS PWE +E++AIHSLQ+++RDSF++  E  N+SK  V G  Q    +++G++ELSSV
Sbjct: 592 KSRSLPWENAEMDAIHSLQLILRDSFRDAAEGTNNSKAIVNGQVQLRELELRGINELSSV 651

Query: 617 ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
           A EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+++++ +ES+  V
Sbjct: 652 AREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIFKESEATV 711

Query: 677 ENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736
           E L+ RAL GEEDKNVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD+T 
Sbjct: 712 EKLLSRALRGEEDKNVEIKLKTFGSEQSKGPIFVVVNACSSRDYTQNIVGVCFVGQDVTG 771

Query: 737 EKVLMDKFIRLQ 748
           +KV+MDKF+ +Q
Sbjct: 772 QKVVMDKFVNIQ 783


>gi|108802781|gb|ABG21341.1| PHYTOCHROME C [Arabidopsis thaliana]
          Length = 1054

 Score =  999 bits (2582), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1040 (48%), Positives = 692/1040 (66%), Gaps = 63/1040 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQ FGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQTFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALQKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               IT KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYITEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKKLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  QGDYARIMWSPSTLIPPIFMTNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPAWKGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIP 1032
               + V ++FR+ HP  G+P
Sbjct: 1035 KRMKRVELEFRIIHPAPGLP 1054


>gi|108802797|gb|ABG21349.1| PHYTOCHROME C [Arabidopsis thaliana]
          Length = 1054

 Score =  998 bits (2581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1040 (48%), Positives = 692/1040 (66%), Gaps = 63/1040 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALEKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY    W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDNLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               I+ KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYISEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKTLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            +GDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  KGDYARIMWSPSTLIPPIFITNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   +   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIKKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPALRGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIP 1032
               + V ++FR+ HP  G+P
Sbjct: 1035 KRMKRVELEFRIIHPAPGLP 1054


>gi|108802809|gb|ABG21355.1| PHYTOCHROME C [Arabidopsis thaliana]
          Length = 1054

 Score =  998 bits (2581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1040 (48%), Positives = 692/1040 (66%), Gaps = 63/1040 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEG---VPEEQITAYLSKIQRGGLIQPFGCML 100
            DA L   FE+S    + F+YS S+ ++ P     +P   ++ YL KIQRG LIQPFGC++
Sbjct: 26   DAKLHGNFEES---ERLFDYSASINLNMPSSSCEIPSSAVSTYLQKIQRGMLIQPFGCLI 82

Query: 101  AVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157
             V+E   ++I +SEN  EML L      S +      IG D ++LF  P  ++L KA   
Sbjct: 83   VVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGTDVKSLFLSPGCSALEKAVDF 142

Query: 158  REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
             EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KLA 
Sbjct: 143  GEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKLAA 200

Query: 218  SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
             +ISRLQALP G++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R D+EPYL
Sbjct: 201  KSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDMEPYL 260

Query: 278  GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
            G+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGCH 
Sbjct: 261  GLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGCHA 320

Query: 338  QYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYACEF 387
            QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYACEF
Sbjct: 321  QYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFVPFPLRYACEF 380

Query: 388  LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
            L Q F +++  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDGAA
Sbjct: 381  LTQVFGVKINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDGAA 440

Query: 448  LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
            LYY    W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CGMA
Sbjct: 441  LYYRDNLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICGMA 500

Query: 508  TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
               I+ KDFLFWFRS TAK++KWGGA+H P  +D G +MHPRSSFKAF+E+V+ +S PW+
Sbjct: 501  AVYISEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSVPWD 559

Query: 568  VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
              E++AI+SLQ++++ S Q    E  SK   +     +++Q VDEL  +  EMVRLI+TA
Sbjct: 560  DMEMDAINSLQLIIKGSLQ----EEHSKTVVDVPLVDNRVQKVDELCVIVNEMVRLIDTA 615

Query: 628  TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687
              PIF VD+SG INGWN+K AE+TGL   +A+GK + D +V ++S   V+N++  AL G 
Sbjct: 616  AVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSD-LVEDDSVETVKNMLALALEGS 674

Query: 688  EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRL 747
            E++  E+++R F  +++ S V ++VN C SRD  NNV GVCF+GQD+T +K L + + R+
Sbjct: 675  EERGAEIRIRAFGPKRKSSPVELVVNTCCSRDMTNNVLGVCFIGQDVTGQKTLTENYSRV 734

Query: 748  QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------- 794
            +GDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+              
Sbjct: 735  KGDYARIMWSPSTLIPPIFITNENGVCSEWNNAMQKLSGIKREEVVNKILLGEVFTTDDY 794

Query: 795  --------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIG 833
                                I+GQ   E   FGF++R G F+E  L+A++RTD EGKV G
Sbjct: 795  GCCLKDHDTLTKLRIGFNAVISGQKNIEKLLFGFYHRDGSFIEALLSANKRTDIEGKVTG 854

Query: 834  CFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 893
              CF+Q+  P+LQ AL+ Q + +  I   + +LAY+R EVK+P   I F+  LL SS +S
Sbjct: 855  VLCFLQVPSPELQYALQVQQISEHAIACALNKLAYLRHEVKDPEKAISFLQDLLHSSGLS 914

Query: 894  ENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRD 953
            E+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L  +
Sbjct: 915  EDQKRLLRTSVLCREQLAKVISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSIE 974

Query: 954  KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKLIK 1012
            + + +  D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ I 
Sbjct: 975  RKVQISCDYPQEVSSMRLYGDNLRLQQILSETLLSSIRFTPALRGLCVSFKVIARIEAIG 1034

Query: 1013 DADQFVHVQFRLTHPGEGIP 1032
               + V ++FR+ HP  G+P
Sbjct: 1035 KRMKRVKLEFRIIHPAPGLP 1054


>gi|33333480|gb|AAQ11873.1| phytochrome C [Stellaria longipes]
          Length = 1114

 Score =  998 bits (2580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1094 (46%), Positives = 702/1094 (64%), Gaps = 59/1094 (5%)

Query: 44   ADAGLLAEFEQSVASGKSFNYSRSV----ISPPEGVPEEQITAYLSKIQRGGLIQPFGCM 99
             DA L ++FEQS    + FNY+ SV    ++    VP   + +YL K+QRGGLIQ FGC+
Sbjct: 25   VDAQLASDFEQS---ERVFNYTSSVDLNLLASSSDVPSSTVKSYLQKVQRGGLIQSFGCL 81

Query: 100  LAVEEPTFRIIGYSENCLEMLDLRSRS--EDFELNGL-IGIDARTLFTPPSGASLAKAAA 156
            +A++E  F++I YSEN  EMLDL   +     +L  L  G D  TLFT    ++L KA  
Sbjct: 82   IAIDEKNFKVIAYSENAPEMLDLTPHTVPNIEQLEALTFGTDVATLFTSSGVSALQKAVN 141

Query: 157  SREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLA 216
              E++LLNPILVHS +    KPFYAILHRI VG+V+DLE     +  + ++GA+ S KLA
Sbjct: 142  YSELNLLNPILVHSKNSG--KPFYAILHRIKVGLVLDLETVNLAETLVGVSGALMSYKLA 199

Query: 217  VSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPY 276
              AIS+LQ+LP  +I LLCD +V++V++LTGYDRVM+Y FHDD HGEV+ E     L+ Y
Sbjct: 200  AKAISKLQSLPSQNIPLLCDVLVKEVRELTGYDRVMVYKFHDDQHGEVIGESHSPSLDSY 259

Query: 277  LGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCH 336
            LG+H+PA DIPQA+RFLF +N+VRMICDC +  V VIQ + L QPL L  STLR+PHGCH
Sbjct: 260  LGLHYPATDIPQASRFLFLKNKVRMICDCRSPSVKVIQDEALTQPLSLGGSTLRAPHGCH 319

Query: 337  LQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
             QYM NMGSIASLVMAV IN+++        + KLWGLVVCHHTS R++P+PLRYACEFL
Sbjct: 320  AQYMANMGSIASLVMAVTINNEEDEVSDRHRTRKLWGLVVCHHTSSRFVPYPLRYACEFL 379

Query: 389  VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
            VQ F + +  E+++A Q+ EK+IL+ Q +LCDML+RD+P +I+TQSP++MDLVKCDGAAL
Sbjct: 380  VQVFGIHINKEVELAAQVREKHILKIQSMLCDMLMRDSPITIITQSPNVMDLVKCDGAAL 439

Query: 449  YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
             Y  + W++G+TP  +Q+KDI+ WL   HG+  GL TDSL EAGYPGA  LG AVCGMA 
Sbjct: 440  LYQSKLWVLGITPKSNQIKDISQWLFEYHGNTKGLITDSLKEAGYPGALELGDAVCGMAA 499

Query: 509  ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
             RI+S++ LFWFRSHTAKE+KWGGAKH P   D  G MHPRSSF AFL+VVK RS PWE 
Sbjct: 500  VRISSEEMLFWFRSHTAKEIKWGGAKHEPGQNDERGIMHPRSSFNAFLDVVKWRSVPWED 559

Query: 569  SEINAIHSLQIVMRDSF---QEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
             E+++I+SLQ++        + M + +   V       G  +    ++  +  E++RLIE
Sbjct: 560  MEMDSIYSLQLIFIKCLVKNKTMSDTSKMIVNVPGVGVGGPLSSALKVEPLTGEVIRLIE 619

Query: 626  TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
            TA  PIF VD +G INGWN KVAELTG+P  + +G  L+D VV E +   ++N++  AL 
Sbjct: 620  TAAVPIFSVDVTGAINGWNFKVAELTGVPMEQVIGSQLVDVVV-EGTVEVLKNILSSALQ 678

Query: 686  GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
            G E+KNVE++LR      + S V ++VNAC SRD   NV G+CFVGQD+T EK ++D+  
Sbjct: 679  GTEEKNVEIRLRTLGSHGKTSYVVLVVNACCSRDVDENVTGICFVGQDVTEEKRIVDQIT 738

Query: 746  RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
             LQGDY  I+++   LIPPIF  D+     EWN AM K++G  +   +G           
Sbjct: 739  ELQGDYSGIMRNPCHLIPPIFLIDDQGVGLEWNDAMAKISGLSKEYTVGRMLIGEVFTNG 798

Query: 795  ----------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVI 832
                                  I G+ ++   FGFF+ + + ++  L A+ R +A+  + 
Sbjct: 799  NDGCQVKDYETLLRLKIFLSKMIDGEESDKVLFGFFDHRKKCIDALLCATPRFNADRNIT 858

Query: 833  GCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSI 892
            G  CF+ +  P+LQ ++  Q + +    + +K+L Y R++V++P+ G+ F   LLESS +
Sbjct: 859  GVLCFLHLPSPELQYSIHMQKVSEKAATSTLKKLTYFREQVRSPIKGMAFTRNLLESSEL 918

Query: 893  SENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLR 952
            +  Q+Q L T   CE Q+M II+  D+  IEEG +E  S++F L   LDAVVSQVM L +
Sbjct: 919  NIEQKQILTTISLCESQLMKIIEDTDIPSIEEGYLETSSDDFNLLEALDAVVSQVMPLSQ 978

Query: 953  DKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDG-WVEIKVLPGLKLI 1011
            +  +H+ HD P ++  + L GD +RLQ +LS+FL   VR  P   G  V+  V    + +
Sbjct: 979  ESQVHIKHDFPSDLSPVCLFGDNVRLQQILSNFLTIAVRFTPPSTGSSVKFAVSSRTEHV 1038

Query: 1012 KDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYV 1071
                Q  HV+FR+THP  G+P +LI +M+  R+   +  GL L +S KL+ +MNG ++Y+
Sbjct: 1039 GSKMQMFHVEFRITHPLPGVPENLIREMFQ-RSPGMSRGGLSLYISHKLVKIMNGTLQYL 1097

Query: 1072 RENSKCYFVIDLEL 1085
            R      F++ LE 
Sbjct: 1098 RGEDYSSFIVFLEF 1111


>gi|108802819|gb|ABG21360.1| PHYTOCHROME C [Arabidopsis lyrata]
          Length = 1055

 Score =  998 bits (2580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1042 (48%), Positives = 695/1042 (66%), Gaps = 66/1042 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSV-ISPPEGVPEEQ----ITAYLSKIQRGGLIQPFGCM 99
            DA L   FE+S    + F+YS S+ ++ P     E     ++ YL KIQRG LIQPFGC+
Sbjct: 26   DAKLHTNFEES---ERLFDYSASINLNMPSSSSCEIPSSAVSTYLQKIQRGMLIQPFGCL 82

Query: 100  LAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAA 155
            + V+E   ++I +SEN  EML L   +    E  E    IG D ++LF  P  ++L KA 
Sbjct: 83   IVVDEKNLKVIAFSENTQEMLGLTPHTVPSMEQREALS-IGTDVKSLFQSPGCSALQKAV 141

Query: 156  ASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKL 215
               EIS+LNPI +H   RS  KPFYAILHRI+ G+VIDLEP    +  ++ AGA++S KL
Sbjct: 142  DFGEISILNPITLHC--RSSSKPFYAILHRIEEGLVIDLEPVSPDEVPVTAAGALRSYKL 199

Query: 216  AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP 275
            A  +ISRLQALPGG++ LLCD +V++V +LTGYDRVM+Y FH+D HGEV++E  R DLEP
Sbjct: 200  AAISISRLQALPGGNMLLLCDALVKEVSELTGYDRVMVYKFHEDGHGEVIAECCREDLEP 259

Query: 276  YLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGC 335
            YLG+H+ A DIPQA+RFLF +N+VRMICDC A+PV V+Q K L QP+ L  STLR+PHGC
Sbjct: 260  YLGLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLSQPISLSGSTLRAPHGC 319

Query: 336  HLQYMTNMGSIASLVMAVIINSKDS----------MKLWGLVVCHHTSPRYIPFPLRYAC 385
            H QYM+NMGS+ASLVM+V IN  DS            LWGLVVCHH SPR++PFPLRYAC
Sbjct: 320  HAQYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVCHHASPRFLPFPLRYAC 379

Query: 386  EFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDG 445
            EFL Q F +Q+  E + A+ L EK IL+TQ +LCDML R+AP  IVTQSP+IMDLVKCDG
Sbjct: 380  EFLTQVFGVQVNKEAESAVLLKEKRILQTQSVLCDMLFRNAPIGIVTQSPNIMDLVKCDG 439

Query: 446  AALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCG 505
            AALYY  + W +GVTPTE+Q++D+  W+L +HG  TG +T+SL E+GYP A++LG+++CG
Sbjct: 440  AALYYREKLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLMESGYPDASVLGESICG 499

Query: 506  MATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFP 565
            MA   IT KDFLFWFRS TAK+++WGGA+H P  +D G +MHPRSSFKAF+E+V+ +S P
Sbjct: 500  MAAVYITDKDFLFWFRSGTAKQIQWGGARHDPNDRD-GKRMHPRSSFKAFMEIVRWKSMP 558

Query: 566  WEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIE 625
            W+  E++AI+SLQ++++ S Q    +  SK   N     +++Q VDEL  +  EMVRLI+
Sbjct: 559  WDDMEMDAINSLQLIIKGSLQ----DEHSKTVVNVPFVDNRVQKVDELCVIVNEMVRLID 614

Query: 626  TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685
            TA  PIF VD+SG INGWN+K AE++GL   +A+GK + D +V ++S   V+N++  AL 
Sbjct: 615  TAAVPIFAVDASGVINGWNSKAAEVSGLAIEQAIGKPVSD-LVEDDSAETVKNMLALALE 673

Query: 686  GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFI 745
            G E++   +++R F  +++ S + ++VN C SRD  NNV GVCF+GQD+T +K L++ + 
Sbjct: 674  GSEERGAAIRIRAFGPKRKSSPIELVVNTCCSRDRTNNVLGVCFIGQDVTGQKTLIENYS 733

Query: 746  RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------- 794
            R+QGDY  I+ S + LIPPIF ++EN  CSEWN AM+K++G  R EV+            
Sbjct: 734  RVQGDYARIMWSPSTLIPPIFMTNENGLCSEWNNAMQKLSGIKREEVVNKLILGEVFTSD 793

Query: 795  ----------------------ITGQ-GTENFPFGFFNRQGQFVEVALTASRRTDAEGKV 831
                                  I+GQ   E   FGF++R G F+E  L+A++RTD EGKV
Sbjct: 794  DYGCRLKDHDTLTKLRIGFNAVISGQKNIEKLLFGFYHRDGSFIEALLSANKRTDIEGKV 853

Query: 832  IGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSS 891
             G  CF+Q+  P+LQ AL+ Q + +  I     +LAY+RQEVKNP   I F+  LL SS 
Sbjct: 854  TGVLCFLQVPSPELQYALQVQQVSEQVIACAFNKLAYLRQEVKNPEQAISFLQDLLHSSG 913

Query: 892  ISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLL 951
            +SE+Q++ L TS  C  Q+  +I   D+  IEEG +EL   EF L   L+AVV QVM L 
Sbjct: 914  LSEDQKKLLRTSVLCREQLAKVIRDSDIDGIEEGYVELDCSEFNLEESLEAVVKQVMELS 973

Query: 952  RDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW-VEIKVLPGLKL 1010
             ++ + ++ D P+E+ ++ L GD +RLQ +LS+ L   +R  P+  G  V  KV+  ++ 
Sbjct: 974  IERKVQIICDYPQEVLSMRLYGDNLRLQQILSETLLSSIRFTPALKGLCVSFKVIARIEA 1033

Query: 1011 IKDADQFVHVQFRLTHPGEGIP 1032
            I    + V ++FR+ HP  G+P
Sbjct: 1034 IGKRMKRVELEFRIIHPAPGLP 1055


>gi|406685623|gb|AFS51252.1| phytochrome P, partial [Sundacarpus amarus]
          Length = 670

 Score =  996 bits (2576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/673 (71%), Positives = 553/673 (82%), Gaps = 22/673 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGCML VEE  F+II YSEN LEMLDL  +S  + +L         
Sbjct: 1   AYLSRMQRGGTIQPFGCMLTVEEAGFKIIAYSENALEMLDLMPQSVPNMDLGDPAGGGAV 60

Query: 134 -LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVI 192
             IG D RTLFTP S  +L KAA +REISL+NPI VHS      KPFYAI+HRIDVGIV+
Sbjct: 61  LAIGTDVRTLFTPASARALEKAAVAREISLMNPIWVHSQYTG--KPFYAIVHRIDVGIVV 118

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           DLEP + GD A+S AGAVQSQKLAV AISRLQ+LP GD+GLLCDTVVEDV++LTGYDRVM
Sbjct: 119 DLEPLRMGDAAMSAAGAVQSQKLAVRAISRLQSLPAGDVGLLCDTVVEDVRELTGYDRVM 178

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FH+D+HGEVV+EIRRSDLEPYLG H+PA DIPQA+RFLF QNRVRMICDC A PV V
Sbjct: 179 AYKFHEDEHGEVVAEIRRSDLEPYLGSHYPATDIPQASRFLFMQNRVRMICDCSATPVRV 238

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMK 362
           IQS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D          SMK
Sbjct: 239 IQSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEEGGGTSGRTSMK 298

Query: 363 LWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDML 422
           LWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A Q+ EK+ILRTQ LLCDML
Sbjct: 299 LWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQMTEKHILRTQTLLCDML 358

Query: 423 LRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTG 482
           LRDAP  IV+QSPSIM+LVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TG
Sbjct: 359 LRDAPIGIVSQSPSIMNLVKCDGAALYYGGTTWCLGVTPTEAQIKDIADWLLEYHGDSTG 418

Query: 483 LSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDN 542
           LSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+
Sbjct: 419 LSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDD 478

Query: 543 GGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQ 602
           G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ N +K   + + 
Sbjct: 479 GRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSN-TKTMVHARL 537

Query: 603 NGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKS 662
           N  K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKS
Sbjct: 538 NDMKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKS 597

Query: 663 LIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKN 722
           L+ ++V EES  +VE ++ RAL GEE+KNVE+KLR F L+KQ   +Y++VNAC+S DY +
Sbjct: 598 LVHDLVFEESAESVEKMLYRALRGEEEKNVEVKLRTFGLEKQKEAIYLVVNACSSMDYTD 657

Query: 723 NVKGVCFVGQDIT 735
           N+ GVCFVGQD+T
Sbjct: 658 NIVGVCFVGQDVT 670


>gi|11134026|sp|P93526.1|PHYA_SORBI RecName: Full=Phytochrome a
 gi|1800215|gb|AAB41397.1| phytochrome A [Sorghum bicolor]
 gi|39777227|gb|AAR30883.1| phytochrome A [Sorghum bicolor]
          Length = 1131

 Score =  993 bits (2566), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1110 (45%), Positives = 706/1110 (63%), Gaps = 73/1110 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            I+     DA L AE+E+S   G SF+YS+ ++      P EQ      + AYL  IQRG 
Sbjct: 24   ILAQTTLDAELNAEYEES---GDSFDYSK-LVEAQRSTPSEQQGRSGKVIAYLQHIQRGK 79

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA++E +FR+I +SEN  EML   S +    +D    G IG + R+LFT P 
Sbjct: 80   LIQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLG-IGTNVRSLFTDPG 138

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
              +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + A
Sbjct: 139  ATALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAA 196

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AIS++Q+LPGG +  LC+TVV++V +LTGYDRVM Y FH+D+HGEV +E
Sbjct: 197  GALQSYKLAAKAISKIQSLPGGSMEALCNTVVKEVFELTGYDRVMAYKFHEDEHGEVFAE 256

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  +EPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V +I+ + L   + L  S
Sbjct: 257  ITKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKSVKIIEDEALSIDISLCGS 316

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHT 372
            TLR+PH CHLQYM NM SIASLVMAV++N  +                 +LWGL+VCHH 
Sbjct: 317  TLRAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEPGPEQPPQQQKKKRLWGLIVCHHE 376

Query: 373  SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIV 431
            SPRY+PFPLRYACEFL Q F++ +  E ++  Q+ EK+ILR Q +L DML ++A P SIV
Sbjct: 377  SPRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQTMLSDMLFKEASPLSIV 436

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            + SP+IMDLVKCDGAAL YG + W +   PTESQ++DIA+WL   HGD TGLSTDSL +A
Sbjct: 437  SGSPNIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDA 496

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
            GYPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  KD+  +MHPR S
Sbjct: 497  GYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLS 556

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGS-KMQGV 610
            FKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +    +  G   Q G  K+ G+
Sbjct: 557  FKAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKP--VQASGLDNQIGDLKLDGL 614

Query: 611  DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
             EL +V  EMVRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V +
Sbjct: 615  AELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHIL-TLVED 673

Query: 671  ESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFV 730
             S   V+ ++  AL G+E+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV
Sbjct: 674  SSVSIVQRMLYLALQGKEEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFV 733

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
             QD+T  K++MDKF R++GDY+AII + NPLIPPIF +D+   CSEWN AM K+TGW R 
Sbjct: 734  AQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNVAMTKLTGWHRD 793

Query: 791  EVI---------------------------------GITGQGTENFPFGFFNRQGQFVEV 817
            EVI                                  + G+  EN PFG F+R G+++E 
Sbjct: 794  EVIDKMLLGEVFDSSNASCLLKSKDDFVRLCIIINSALAGEEAENAPFGLFDRNGKYIEC 853

Query: 818  ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPL 877
             L+ +R+ +A+G V G FCF+ +   DLQ AL  Q   +     ++K  +Y+R  +  PL
Sbjct: 854  LLSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRRLKAFSYMRHAINKPL 913

Query: 878  NGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFL 935
            +G+ +  + L+S+ ++E Q + +  +D+C RQ+  I+  +D   I + +  ++L   EF+
Sbjct: 914  SGMLYSRETLKSTGLNEEQMRQVHVADSCHRQLNKILADLDQDNITDKSSCLDLDMAEFV 973

Query: 936  LGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS 995
            L +++ + VSQV++  + K + +  ++PE      + GD IRLQ +LSDFL   V+ +P 
Sbjct: 974  LEDVVVSAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPV 1033

Query: 996  PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLK 1055
              G V+I        I +    +  + R+ H G G+P+ ++  MY   N+  + EGL L 
Sbjct: 1034 -GGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEPSEEGLSLL 1092

Query: 1056 LSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            +SR LL +MNG +R++RE     F++  EL
Sbjct: 1093 VSRNLLRLMNGNIRHIREAGMSTFILTAEL 1122


>gi|255642605|gb|ACU21560.1| phytochrome A [Medicago sativa]
          Length = 1001

 Score =  992 bits (2564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1005 (48%), Positives = 675/1005 (67%), Gaps = 55/1005 (5%)

Query: 135  IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
            IG D RT+FT PS ++L KA    E+SLLNPILVH  +    KPFYAI+HR+   ++ID 
Sbjct: 2    IGTDIRTIFTAPSASALQKALGFAEVSLLNPILVHCKTSG--KPFYAIIHRVTGSLIIDF 59

Query: 195  EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
            EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y
Sbjct: 60   EPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAY 119

Query: 255  NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
             FH+DDHGEV++E+ ++ LEPYLG+H+PA DIPQAARFL  +N+VRMI DCHA  V V+Q
Sbjct: 120  KFHEDDHGEVIAEVTKTGLEPYLGLHYPATDIPQAARFLVMKNKVRMIVDCHAKHVKVLQ 179

Query: 315  SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-------------SM 361
             ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N  D               
Sbjct: 180  DEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLPQKKK 239

Query: 362  KLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDM 421
            +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLCDM
Sbjct: 240  RLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQILEKNILRTQTLLCDM 299

Query: 422  LLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCT 481
            L+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W++G TP+E Q+++IA W+   H D T
Sbjct: 300  LMRDAPLGIVSQSPNIMDLVKCDGAALLYRNKLWILGSTPSEPQIREIALWMSEYHTDST 359

Query: 482  GLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKD 541
            GLSTDSL++AG+PGA  L   VCGMA  RITSKD +FWFRSHTA E++WGGAKH P  +D
Sbjct: 360  GLSTDSLSDAGFPGALKLNDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGEQD 419

Query: 542  NGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ 601
            +G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++ ++ +  + +    NT+
Sbjct: 420  DGRKMHPRSSFKAFLEVVKARSIPWKDFEMDAIHSLQLILRNASKDTDMIDLNSKAINTR 479

Query: 602  QNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGK 661
             N  K++G+ EL +V  EMVRLIETAT PI  VD  G +NGWN K++ELTGLP  EA+GK
Sbjct: 480  LNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGMVNGWNIKISELTGLPVGEAIGK 539

Query: 662  SLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYK 721
             L+  +V + S   V+ ++  AL G+E+KNV+ +++    +     + ++VNAC SRD  
Sbjct: 540  HLL-TLVEDSSTDIVKKMLNLALQGQEEKNVQFEIKTHGSKTDSGPISLIVNACASRDLH 598

Query: 722  NNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAM 781
             NV GVCFV QDIT +K +MDKF R++GDY+AI+Q+ N LIPPIF +DE   C EWNAAM
Sbjct: 599  ENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEWNAAM 658

Query: 782  EKVTGWMRHEVI---------------------------------GITGQGTENFPFGFF 808
             K+TGW R EV+                                  +TG  TE  PFGF 
Sbjct: 659  IKITGWKREEVMDKMLLGEVFGTHMSCCRLKNQEAFVNFGIVLNKAMTGLETEKVPFGFL 718

Query: 809  NRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAY 868
            +R+G++VE  L+ S++ DAEG V G FCF+Q+  P+LQ AL  Q L +     ++K L Y
Sbjct: 719  SRKGKYVECLLSVSKKIDAEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLTY 778

Query: 869  IRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNME 928
            +R++++NPL+GI F  K+LE++ +   Q++ + TS  C+RQ+  I+D  DL  I +G ++
Sbjct: 779  MRRQIRNPLSGIVFSSKMLENTELGTEQKRIVNTSSQCQRQLSKILDDSDLDSIIDGYLD 838

Query: 929  LKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHC 988
            L+  EF L  +L   +SQVM     +++ +++D+ E I   +L GD +RLQ VL+DFL  
Sbjct: 839  LEMAEFTLHEVLVTSLSQVMNRSNTRSIRIVNDVAEHIAMETLYGDSLRLQQVLADFLLI 898

Query: 989  VVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTT 1048
             +   P+  G V I      + +  +   V+++  +TH G G+   ++  M+ G N   +
Sbjct: 899  SINSTPN-GGQVVIAATLTKEQLGKSVHLVNLELSITHGGNGVAEAVLNQMF-GNNGLES 956

Query: 1049 PEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL----KTRG 1089
             EG+ L +SRKLL +MNG VRY++E  K  F++ +EL    K RG
Sbjct: 957  EEGISLHISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAQKLRG 1001


>gi|39777231|gb|AAR30885.1| phytochrome A [Sorghum bicolor]
 gi|39777233|gb|AAR30886.1| phytochrome A [Sorghum bicolor]
          Length = 1131

 Score =  992 bits (2564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1110 (45%), Positives = 706/1110 (63%), Gaps = 73/1110 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            I+     DA L AE+E+S   G SF+YS+ ++      P EQ      + AYL  IQRG 
Sbjct: 24   ILAQTTLDAELNAEYEES---GDSFDYSK-LVEAQRSTPSEQQGRSGKVIAYLQHIQRGK 79

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA++E +FR+I +SEN  EML   S +    +D    G IG + R+LFT P 
Sbjct: 80   LIQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLG-IGTNVRSLFTDPG 138

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
              +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + A
Sbjct: 139  ATALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAA 196

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AIS++Q+LPGG +  LC+TVV++V +LTGYDRVM Y FH+D+HGEV +E
Sbjct: 197  GALQSYKLAAKAISKIQSLPGGSMEALCNTVVKEVFELTGYDRVMAYKFHEDEHGEVFAE 256

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  +EPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V +I+ + L   + L  S
Sbjct: 257  ITKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKSVKIIEDEALSIDISLCGS 316

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHT 372
            TLR+PH CHLQYM NM SIASLVMAV++N  +                 +LWGL+VCHH 
Sbjct: 317  TLRAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEPGPEQPPQQQKKKRLWGLIVCHHE 376

Query: 373  SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIV 431
            SPRY+PFPLRYACEFL Q F++ +  E ++  Q+ EK+ILR Q +L DML ++A P SIV
Sbjct: 377  SPRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQTMLSDMLFKEASPLSIV 436

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            + SP+IMDLVKCDGAAL YG + W +   PTESQ++DIA+WL   HGD TGLSTDSL +A
Sbjct: 437  SGSPNIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDA 496

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
            GYPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  KD+  +MHPR S
Sbjct: 497  GYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLS 556

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGS-KMQGV 610
            FKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +    +  G   Q G  K+ G+
Sbjct: 557  FKAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKP--VQASGLDNQIGDLKLDGL 614

Query: 611  DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
             EL +V  EMVRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V +
Sbjct: 615  AELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHIL-TLVED 673

Query: 671  ESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFV 730
             S   V+ ++  AL G+E+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV
Sbjct: 674  SSVSIVQRMLYLALQGKEEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFV 733

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
             QD+T  K++MDKF R++GDY+AII + NPLIPPIF +D+   CSEWN AM K+TGW R 
Sbjct: 734  AQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNVAMTKLTGWHRD 793

Query: 791  EVI---------------------------------GITGQGTENFPFGFFNRQGQFVEV 817
            EVI                                  + G+  EN PFG F+R G+++E 
Sbjct: 794  EVIDKMLLGEVFDSSNASCLLKSKDDFVRLCIIINSALAGEEAENAPFGLFDRNGKYIEC 853

Query: 818  ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPL 877
             L+ +R+ +A+G V G FCF+ +   DLQ AL  Q   +     ++K  +Y+R  +  PL
Sbjct: 854  LLSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRRLKAFSYMRHAINKPL 913

Query: 878  NGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFL 935
            +G+ +  + L+S+ ++E Q + +  +D+C RQ+  I+  +D   I + +  ++L   EF+
Sbjct: 914  SGMLYSRETLKSTGLNEEQMRQVHVADSCHRQLNKILADLDQDNITDKSSCLDLDMAEFV 973

Query: 936  LGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS 995
            L +++ + VSQV++  + K + +  ++PE      + GD IRLQ +LSDFL   V+ +P 
Sbjct: 974  LEDVVVSAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPV 1033

Query: 996  PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLK 1055
              G V+I        I +    +  + R+ H G G+P+ ++  MY   N+  + EGL L 
Sbjct: 1034 -GGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEPSEEGLSLL 1092

Query: 1056 LSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            +SR LL +MNG +R++RE     F++  EL
Sbjct: 1093 VSRNLLRLMNGNIRHLREAGMSTFILTAEL 1122


>gi|242033161|ref|XP_002463975.1| hypothetical protein SORBIDRAFT_01g009930 [Sorghum bicolor]
 gi|241917829|gb|EER90973.1| hypothetical protein SORBIDRAFT_01g009930 [Sorghum bicolor]
          Length = 1131

 Score =  991 bits (2562), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1110 (45%), Positives = 706/1110 (63%), Gaps = 73/1110 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            I+     DA L AE+E+S   G SF+YS+ ++      P EQ      + AYL  IQRG 
Sbjct: 24   ILAQTTLDAELNAEYEES---GDSFDYSK-LVEAQRSTPSEQQGRSGKVIAYLQHIQRGK 79

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA++E +FR+I +SEN  EML   S +    +D    G IG + R+LFT P 
Sbjct: 80   LIQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLG-IGTNVRSLFTDPG 138

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
              +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + A
Sbjct: 139  ATALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAA 196

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AIS++Q+LPGG +  LC+TVV++V +LTGYDRVM Y FH+D+HGEV +E
Sbjct: 197  GALQSYKLAAKAISKIQSLPGGSMEALCNTVVKEVFELTGYDRVMAYKFHEDEHGEVFAE 256

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  +EPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V +I+ + L   + L  S
Sbjct: 257  ITKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKSVKIIEDEALSIDISLCGS 316

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHT 372
            TLR+PH CHLQYM NM SIASLVMAV++N  +                 +LWGL+VCHH 
Sbjct: 317  TLRAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEPGPEQPPQQQKKKRLWGLIVCHHE 376

Query: 373  SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIV 431
            SPRY+PFPLRYACEFL Q F++ +  E ++  Q+ EK+ILR Q +L DML ++A P SIV
Sbjct: 377  SPRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQTMLSDMLFKEASPLSIV 436

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            + SP+IMDLVKCDGAAL YG + W +   PTESQ++DIA+WL   HGD TGLSTDSL +A
Sbjct: 437  SGSPNIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDA 496

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
            GYPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  KD+  +MHPR S
Sbjct: 497  GYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLS 556

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGS-KMQGV 610
            FKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +    +  G   Q G  K+ G+
Sbjct: 557  FKAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKP--VQASGLDNQIGDLKLDGL 614

Query: 611  DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
             EL +V  EMVRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V +
Sbjct: 615  AELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHIL-TLVED 673

Query: 671  ESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFV 730
             S   V+ ++  AL G+E+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV
Sbjct: 674  SSVSIVQRMLYLALQGKEEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFV 733

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
             QD+T  K++MDKF R++GDY+AII + NPLIPPIF +D+   CSEWN AM K+TGW R 
Sbjct: 734  AQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNVAMTKLTGWHRD 793

Query: 791  EVI---------------------------------GITGQGTENFPFGFFNRQGQFVEV 817
            EVI                                  + G+  EN PFG F+R G+++E 
Sbjct: 794  EVIDKMLLGEVFDSSNASCLLKSKDDFVRLCIIINSALAGEEAENAPFGLFDRNGKYIEC 853

Query: 818  ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPL 877
             L+ +R+ +A+G V G FCF+ +   DLQ AL  Q   +     ++K  +Y+R  +  PL
Sbjct: 854  LLSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRRLKAFSYMRHAINKPL 913

Query: 878  NGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFL 935
            +G+ +  + L+S+ ++E Q + +  +D+C RQ+  I+  +D   I + +  ++L   EF+
Sbjct: 914  SGMLYSRETLKSTGLNEEQMRQVHVADSCHRQLNKILADLDQDNITDKSSCLDLDMAEFV 973

Query: 936  LGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS 995
            L +++ + VSQV++  + K + +  ++PE      + GD IRLQ +LSDFL   V+ +P 
Sbjct: 974  LEDVVVSAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPV 1033

Query: 996  PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLK 1055
              G V+I        I +    +  + R+ H G G+P+ ++  MY   N+  + EGL L 
Sbjct: 1034 -GGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEQSEEGLSLL 1092

Query: 1056 LSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            +SR LL +MNG +R++RE     F++  EL
Sbjct: 1093 VSRNLLRLMNGNIRHLREAGMSTFILTAEL 1122


>gi|39777241|gb|AAR30890.1| phytochrome A [Sorghum bicolor subsp. verticilliflorum]
          Length = 1131

 Score =  991 bits (2561), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1110 (45%), Positives = 705/1110 (63%), Gaps = 73/1110 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            I+     DA L AE+E+S   G SF+YS+ ++      P EQ      + AYL  IQRG 
Sbjct: 24   ILAQTTLDAELNAEYEES---GDSFDYSK-LVEAQRSTPSEQQGRSGKVIAYLQHIQRGK 79

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA++E +FR+I +SEN  EML   S +    +D    G IG + R+LFT P 
Sbjct: 80   LIQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLG-IGTNVRSLFTDPG 138

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
              +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + A
Sbjct: 139  ATALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAA 196

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AIS++Q+LPGG +  LC+TVV++V +LTGYDRVM Y FH+D+HGEV +E
Sbjct: 197  GALQSYKLAAKAISKIQSLPGGSMEALCNTVVKEVFELTGYDRVMAYKFHEDEHGEVFAE 256

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  +EPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V +I+ + L   + L  S
Sbjct: 257  ITKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKSVKIIEDEALSIDISLCGS 316

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHT 372
            TLR+PH CHLQYM NM SIASLVMAV++N  +                 +LWGL+VCHH 
Sbjct: 317  TLRAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEPGPEQPPQQQKKKRLWGLIVCHHE 376

Query: 373  SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIV 431
            SPRY+PFPLRYACEFL Q F++ +  E ++  Q+ EK+ILR Q +L DML ++A P SIV
Sbjct: 377  SPRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQTMLSDMLFKEASPLSIV 436

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            + SP+IMDLVKCDGAAL YG + W +   PTESQ++DIA+WL   HGD TGLSTDSL +A
Sbjct: 437  SGSPNIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDA 496

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
            GYPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  KD+  +MHPR S
Sbjct: 497  GYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLS 556

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGS-KMQGV 610
            FKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +    +  G   Q G  K+ G+
Sbjct: 557  FKAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKP--VQASGLDNQIGDLKLDGL 614

Query: 611  DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
             EL +V  EMVRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V +
Sbjct: 615  AELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHIL-TLVED 673

Query: 671  ESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFV 730
             S   V+ ++  AL G+E+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV
Sbjct: 674  SSVSIVQRMLYLALQGKEEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFV 733

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
             QD+T  K++MDKF R++GDY+AII + NPLIPPIF +D+   CSEWN AM K+TGW R 
Sbjct: 734  AQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNVAMTKLTGWHRD 793

Query: 791  EVI---------------------------------GITGQGTENFPFGFFNRQGQFVEV 817
            EVI                                  + G+  E  PFG F+R G+++E 
Sbjct: 794  EVIDKMLLGEVFDSSNASCLLKSKDDFVRLCIIINSALAGEEAEKAPFGLFDRNGKYIEC 853

Query: 818  ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPL 877
             L+ +R+ +A+G V G FCF+ +   DLQ AL  Q   +     ++K  +Y+R  +  PL
Sbjct: 854  LLSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRRLKAFSYMRHAINKPL 913

Query: 878  NGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFL 935
            +G+ +  + L+S+ ++E Q + +  +D+C RQ+  I+  +D   I + +  ++L   EF+
Sbjct: 914  SGMLYSRETLKSTGLNEEQMRQVHVADSCHRQLNKILADLDQDNITDKSSCLDLDMAEFV 973

Query: 936  LGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS 995
            L +++ + VSQV++  + K + +  ++PE      + GD IRLQ +LSDFL   V+ +P 
Sbjct: 974  LEDVVVSAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPV 1033

Query: 996  PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLK 1055
              G V+I        I +    +  + R+ H G G+P+ ++  MY   N+  + EGL L 
Sbjct: 1034 -GGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEQSEEGLSLL 1092

Query: 1056 LSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            +SR LL +MNG +R++RE     F++  EL
Sbjct: 1093 VSRNLLRLMNGNIRHIREAGMSTFILTAEL 1122


>gi|39777229|gb|AAR30884.1| phytochrome A [Sorghum bicolor]
          Length = 1131

 Score =  990 bits (2560), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1110 (45%), Positives = 705/1110 (63%), Gaps = 73/1110 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            I+     DA L AE+E+S   G SF+YS+ ++      P EQ      + AYL  IQRG 
Sbjct: 24   ILAQTTLDAELNAEYEES---GDSFDYSK-LVEAQRSTPSEQQGRSGKVIAYLQHIQRGK 79

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA++E +FR+I +SEN  EML   S +    +D    G IG + R+LFT P 
Sbjct: 80   LIQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLG-IGTNVRSLFTDPG 138

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
              +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + A
Sbjct: 139  ATALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAA 196

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AIS++Q+LPGG +  LC+TVV++V +LTGYDRVM Y FH+D+HGEV +E
Sbjct: 197  GALQSYKLAAKAISKIQSLPGGSMEALCNTVVKEVFELTGYDRVMAYKFHEDEHGEVFAE 256

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  +EPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V +I+ + L   + L  S
Sbjct: 257  ITKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKSVKIIEDEALSIDISLCGS 316

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHT 372
            TLR+PH CHLQYM NM SIASLVMAV++N  +                 +LWGL+VCHH 
Sbjct: 317  TLRAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEPGPEQPPQQQKKKRLWGLIVCHHE 376

Query: 373  SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIV 431
            SPRY+PFPLRYACEFL Q F++ +  E ++  Q+ EK+ILR Q +L DML ++A P SIV
Sbjct: 377  SPRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQTMLSDMLFKEASPLSIV 436

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            + SP+IMDLVKCDGAAL YG + W +   PTESQ++DIA+WL   HGD TGLSTDSL +A
Sbjct: 437  SGSPNIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDA 496

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
            GYPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  KD+  +MHPR S
Sbjct: 497  GYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLS 556

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGS-KMQGV 610
            FKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +    +  G   Q G  K+ G+
Sbjct: 557  FKAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKP--VQASGLDNQIGDLKLDGL 614

Query: 611  DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
             EL +V  EMVRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V +
Sbjct: 615  AELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHIL-TLVED 673

Query: 671  ESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFV 730
             S   V+ ++  AL G+E+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV
Sbjct: 674  SSVSIVQRMLYLALQGKEEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFV 733

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
             QD+T  K++MDKF R++GDY+AII + NPLIPPIF +D+   CSEWN AM K+TGW R 
Sbjct: 734  AQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNVAMTKLTGWHRD 793

Query: 791  EVI---------------------------------GITGQGTENFPFGFFNRQGQFVEV 817
            EVI                                  + G+  E  PFG F+R G+++E 
Sbjct: 794  EVIDKMLLGEVFDSSNASCLLKSKDDFVRLCIIINSALAGEEAEKAPFGLFDRNGKYIEC 853

Query: 818  ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPL 877
             L+ +R+ +A+G V G FCF+ +   DLQ AL  Q   +     ++K  +Y+R  +  PL
Sbjct: 854  LLSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRRLKAFSYMRHAINKPL 913

Query: 878  NGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFL 935
            +G+ +  + L+S+ ++E Q + +  +D+C RQ+  I+  +D   I + +  ++L   EF+
Sbjct: 914  SGMLYSRETLKSTGLNEEQMRQVHVADSCHRQLNKILADLDQDNITDKSSCLDLDMAEFV 973

Query: 936  LGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS 995
            L +++ + VSQV++  + K + +  ++PE      + GD IRLQ +LSDFL   V+ +P 
Sbjct: 974  LEDVVVSAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPV 1033

Query: 996  PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLK 1055
              G V+I        I +    +  + R+ H G G+P+ ++  MY   N+  + EGL L 
Sbjct: 1034 -GGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEPSEEGLSLL 1092

Query: 1056 LSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            +SR LL +MNG +R++RE     F++  EL
Sbjct: 1093 VSRNLLRLMNGNIRHIREAGMSTFILTAEL 1122


>gi|39777243|gb|AAR30891.1| phytochrome A [Sorghum bicolor subsp. verticilliflorum]
          Length = 1131

 Score =  990 bits (2560), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1110 (45%), Positives = 705/1110 (63%), Gaps = 73/1110 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            I+     DA L AE+E+S   G SF+YS+ ++      P EQ      + AYL  IQRG 
Sbjct: 24   ILAQTTLDAELNAEYEES---GDSFDYSK-LVEAQRSTPSEQQGRSGKVIAYLQHIQRGK 79

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA++E +FR+I +SEN  EML   S +    +D    G IG + R+LFT P 
Sbjct: 80   LIQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLG-IGTNVRSLFTDPG 138

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
              +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + A
Sbjct: 139  ATALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAA 196

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AIS++Q+LPGG +  LC+TVV++V +LTGYDRVM Y FH+D+HGEV +E
Sbjct: 197  GALQSYKLAAKAISKIQSLPGGSMEALCNTVVKEVFELTGYDRVMAYKFHEDEHGEVFAE 256

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  +EPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V +I+ + L   + L  S
Sbjct: 257  ITKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKSVKIIEDEALSIDISLCGS 316

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHT 372
            TLR+PH CHLQYM NM SIASLVMAV++N  +                 +LWGL+VCHH 
Sbjct: 317  TLRAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEPGPEQPPQQQKKKRLWGLIVCHHE 376

Query: 373  SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIV 431
            SPRY+PFPLRYACEFL Q F++ +  E ++  Q+ EK+ILR Q +L DML ++A P SIV
Sbjct: 377  SPRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQTMLSDMLFKEASPLSIV 436

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            + SP+IMDLVKCDGAAL YG + W +   PTESQ++DIA+WL   HGD TGLSTDSL +A
Sbjct: 437  SGSPNIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDA 496

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
            GYPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  KD+  +MHPR S
Sbjct: 497  GYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLS 556

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGS-KMQGV 610
            FKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +    +  G   Q G  K+ G+
Sbjct: 557  FKAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKP--VQASGLDNQIGDLKLDGL 614

Query: 611  DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
             EL +V  EMVRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V +
Sbjct: 615  AELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHIL-TLVED 673

Query: 671  ESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFV 730
             S   V+ ++  AL G+E+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV
Sbjct: 674  SSVSIVQRMLYLALQGKEEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFV 733

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
             QD+T  K++MDKF R++GDY+AII + NPLIPPIF +D+   CSEWN AM K+TGW R 
Sbjct: 734  AQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNVAMTKLTGWHRD 793

Query: 791  EVI---------------------------------GITGQGTENFPFGFFNRQGQFVEV 817
            EVI                                  + G+  E  PFG F+R G+++E 
Sbjct: 794  EVIDKMLLGEVFDSSNASCLLKSKDDFVRLCIIINSALAGEEAEKAPFGLFDRNGKYIEC 853

Query: 818  ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPL 877
             L+ +R+ +A+G V G FCF+ +   DLQ AL  Q   +     ++K  +Y+R  +  PL
Sbjct: 854  LLSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRRLKAFSYMRHAINKPL 913

Query: 878  NGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFL 935
            +G+ +  + L+S+ ++E Q + +  +D+C RQ+  I+  +D   I + +  ++L   EF+
Sbjct: 914  SGMLYSRETLKSTGLNEEQMRQVHVADSCHRQLNKILADLDQDNITDKSSCLDLDMAEFV 973

Query: 936  LGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS 995
            L +++ + VSQV++  + K + +  ++PE      + GD IRLQ +LSDFL   V+ +P 
Sbjct: 974  LEDVVVSAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPV 1033

Query: 996  PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLK 1055
              G V+I        I +    +  + R+ H G G+P+ ++  MY   N+  + EGL L 
Sbjct: 1034 -GGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEQSEEGLSLL 1092

Query: 1056 LSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            +SR LL +MNG +R++RE     F++  EL
Sbjct: 1093 VSRNLLRLMNGNIRHIREAGMSTFILTAEL 1122


>gi|39777251|gb|AAR30895.1| phytochrome A [Sorghum bicolor subsp. verticilliflorum]
          Length = 1131

 Score =  990 bits (2559), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1110 (45%), Positives = 705/1110 (63%), Gaps = 73/1110 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            I+     DA L AE+E+S   G SF+YS+ ++      P EQ      + AYL  IQRG 
Sbjct: 24   ILAQTTLDAELNAEYEES---GDSFDYSK-LVEAQRSTPSEQQGRSGKVIAYLQHIQRGK 79

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA++E +FR+I +SEN  EML   S +    +D    G IG + R+LFT P 
Sbjct: 80   LIQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLG-IGTNVRSLFTDPG 138

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
              +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + A
Sbjct: 139  ATALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAA 196

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AIS++Q+LPGG +  LC+TVV++V +LTGYDRVM Y FH+D+HGEV +E
Sbjct: 197  GALQSYKLAAKAISKIQSLPGGSMEALCNTVVKEVFELTGYDRVMAYKFHEDEHGEVFAE 256

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  +EPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V +I+ + L   + L  S
Sbjct: 257  ITKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKSVKIIEDEALSIDISLCGS 316

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHT 372
            TLR+PH CHLQYM NM SIASLVMAV++N  +                 +LWGL+VCHH 
Sbjct: 317  TLRAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEPGPEQPPQQQKKKRLWGLIVCHHE 376

Query: 373  SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIV 431
            SPRY+PFPLRYACEFL Q F++ +  E ++  Q+ EK+ILR Q +L DML ++A P SIV
Sbjct: 377  SPRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQTMLSDMLFKEASPLSIV 436

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            + SP+IMDLVKCDGAAL YG + W +   PTESQ++DIA+WL   HGD TGLSTDSL +A
Sbjct: 437  SGSPNIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDA 496

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
            GYPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  KD+  +MHPR S
Sbjct: 497  GYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLS 556

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGS-KMQGV 610
            FKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +    +  G   Q G  K+ G+
Sbjct: 557  FKAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKP--VQASGLDNQIGDLKLDGL 614

Query: 611  DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
             EL +V  EMVRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V +
Sbjct: 615  AELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHIL-TLVED 673

Query: 671  ESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFV 730
             S   V+ ++  AL G+E+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV
Sbjct: 674  SSVSIVQRMLYLALQGKEEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFV 733

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
             QD+T  K++MDKF R++GDY+AII + NPLIPPIF +D+   CSEWN AM K+TGW R 
Sbjct: 734  AQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNVAMTKLTGWHRD 793

Query: 791  EVI---------------------------------GITGQGTENFPFGFFNRQGQFVEV 817
            EVI                                  + G+  E  PFG F+R G+++E 
Sbjct: 794  EVIDKMLLGEVFDSSNASCLLKSKDDFVRLCIIINSALAGEEAEKAPFGLFDRNGKYIEC 853

Query: 818  ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPL 877
             L+ +R+ +A+G V G FCF+ +   DLQ AL  Q   +     ++K  +Y+R  +  PL
Sbjct: 854  LLSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRRLKAFSYMRHAINKPL 913

Query: 878  NGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFL 935
            +G+ +  + L+S+ ++E Q + +  +D+C RQ+  I+  +D   I + +  ++L   EF+
Sbjct: 914  SGMLYSRETLKSTGLNEEQMRQVHVADSCHRQLNKILADLDQDNITDKSSCLDLDMAEFV 973

Query: 936  LGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS 995
            L +++ + VSQV++  + K + +  ++PE      + GD IRLQ +LSDFL   V+ +P 
Sbjct: 974  LEDVVVSAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPV 1033

Query: 996  PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLK 1055
              G V+I        I +    +  + R+ H G G+P+ ++  MY   N+  + EGL L 
Sbjct: 1034 -GGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEQSEEGLSLL 1092

Query: 1056 LSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            +SR LL +MNG +R++RE     F++  EL
Sbjct: 1093 VSRNLLRLMNGDIRHIREAGMSTFILTAEL 1122


>gi|39777237|gb|AAR30888.1| phytochrome A [Sorghum bicolor]
 gi|39777253|gb|AAR30896.1| phytochrome A [Sorghum bicolor subsp. verticilliflorum]
 gi|39777255|gb|AAR30897.1| phytochrome A [Sorghum bicolor subsp. verticilliflorum]
          Length = 1131

 Score =  989 bits (2558), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1110 (45%), Positives = 705/1110 (63%), Gaps = 73/1110 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            I+     DA L AE+E+S   G SF+YS+ ++      P EQ      + AYL  IQRG 
Sbjct: 24   ILAQTTLDAELNAEYEES---GDSFDYSK-LVEAQRSTPSEQQGRSGKVIAYLQHIQRGK 79

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA++E +FR+I +SEN  EML   S +    +D    G IG + R+LFT P 
Sbjct: 80   LIQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLG-IGTNVRSLFTDPG 138

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
              +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + A
Sbjct: 139  ATALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAA 196

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AIS++Q+LPGG +  LC+TVV++V +LTGYDRVM Y FH+D+HGEV +E
Sbjct: 197  GALQSYKLAAKAISKIQSLPGGSMEALCNTVVKEVFELTGYDRVMAYKFHEDEHGEVFAE 256

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  +EPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V +I+ + L   + L  S
Sbjct: 257  ITKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKSVKIIEDEALSIDISLCGS 316

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHT 372
            TLR+PH CHLQYM NM SIASLVMAV++N  +                 +LWGL+VCHH 
Sbjct: 317  TLRAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEPGPEQPPQQQKKKRLWGLIVCHHE 376

Query: 373  SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIV 431
            SPRY+PFPLRYACEFL Q F++ +  E ++  Q+ EK+ILR Q +L DML ++A P SIV
Sbjct: 377  SPRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQTMLSDMLFKEASPLSIV 436

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            + SP+IMDLVKCDGAAL YG + W +   PTESQ++DIA+WL   HGD TGLSTDSL +A
Sbjct: 437  SGSPNIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDA 496

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
            GYPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  KD+  +MHPR S
Sbjct: 497  GYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLS 556

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGS-KMQGV 610
            FKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +    +  G   Q G  K+ G+
Sbjct: 557  FKAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKP--VQASGLDNQIGDLKLDGL 614

Query: 611  DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
             EL +V  EMVRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V +
Sbjct: 615  AELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHIL-TLVED 673

Query: 671  ESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFV 730
             S   V+ ++  AL G+E+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV
Sbjct: 674  SSVSIVQRMLYLALQGKEEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFV 733

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
             QD+T  K++MDKF R++GDY+AII + NPLIPPIF +D+   CSEWN AM K+TGW R 
Sbjct: 734  AQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNVAMTKLTGWHRD 793

Query: 791  EVI---------------------------------GITGQGTENFPFGFFNRQGQFVEV 817
            EVI                                  + G+  E  PFG F+R G+++E 
Sbjct: 794  EVIDKMLLGEVFDSSNASCLLKSKDDFVRLCIIINSALAGEEAEKAPFGLFDRNGKYIEC 853

Query: 818  ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPL 877
             L+ +R+ +A+G V G FCF+ +   DLQ AL  Q   +     ++K  +Y+R  +  PL
Sbjct: 854  LLSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRRLKAFSYMRHAINKPL 913

Query: 878  NGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFL 935
            +G+ +  + L+S+ ++E Q + +  +D+C RQ+  I+  +D   I + +  ++L   EF+
Sbjct: 914  SGMLYSRETLKSTGLNEEQMRQVHVADSCHRQLNKILADLDQDNITDKSSCLDLDMAEFV 973

Query: 936  LGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS 995
            L +++ + VSQV++  + K + +  ++PE      + GD IRLQ +LSDFL   V+ +P 
Sbjct: 974  LEDVVVSAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPV 1033

Query: 996  PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLK 1055
              G V+I        I +    +  + R+ H G G+P+ ++  MY   N+  + EGL L 
Sbjct: 1034 -GGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEQSEEGLSLL 1092

Query: 1056 LSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            +SR LL +MNG +R++RE     F++  EL
Sbjct: 1093 VSRNLLRLMNGNIRHLREAGMSTFILTAEL 1122


>gi|39777247|gb|AAR30893.1| phytochrome A [Sorghum bicolor subsp. verticilliflorum]
 gi|39777249|gb|AAR30894.1| phytochrome A [Sorghum bicolor subsp. verticilliflorum]
 gi|39777257|gb|AAR30898.1| phytochrome A [Sorghum bicolor subsp. x drummondii]
          Length = 1131

 Score =  989 bits (2557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1110 (45%), Positives = 705/1110 (63%), Gaps = 73/1110 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            I+     DA L AE+E+S   G SF+YS+ ++      P EQ      + AYL  IQRG 
Sbjct: 24   ILAQTTLDAELNAEYEES---GDSFDYSK-LVEAQRSTPSEQQGRSGKVIAYLQHIQRGK 79

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA++E +FR+I +SEN  EML   S +    +D    G IG + R+LFT P 
Sbjct: 80   LIQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLG-IGTNVRSLFTDPG 138

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
              +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + A
Sbjct: 139  ATALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAA 196

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AIS++Q+LPGG +  LC+TVV++V +LTGYDRVM Y FH+D+HGEV +E
Sbjct: 197  GALQSYKLAAKAISKIQSLPGGSMEALCNTVVKEVFELTGYDRVMAYKFHEDEHGEVFAE 256

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  +EPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V +I+ + L   + L  S
Sbjct: 257  ITKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKSVKIIEDEALSIDISLCGS 316

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHT 372
            TLR+PH CHLQYM NM SIASLVMAV++N  +                 +LWGL+VCHH 
Sbjct: 317  TLRAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEPGPEQPPQQQKKKRLWGLIVCHHE 376

Query: 373  SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIV 431
            SPRY+PFPLRYACEFL Q F++ +  E ++  Q+ EK+ILR Q +L DML ++A P SIV
Sbjct: 377  SPRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQTMLSDMLFKEASPLSIV 436

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            + SP+IMDLVKCDGAAL YG + W +   PTESQ++DIA+WL   HGD TGLSTDSL +A
Sbjct: 437  SGSPNIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDA 496

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
            GYPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  KD+  +MHPR S
Sbjct: 497  GYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLS 556

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGS-KMQGV 610
            FKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +    +  G   Q G  K+ G+
Sbjct: 557  FKAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKP--VQASGLDNQIGDLKLDGL 614

Query: 611  DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
             EL +V  EMVRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V +
Sbjct: 615  AELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHIL-TLVED 673

Query: 671  ESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFV 730
             S   V+ ++  AL G+E+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV
Sbjct: 674  SSVSIVQRMLYLALQGKEEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFV 733

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
             QD+T  K++MDKF R++GDY+AII + NPLIPPIF +D+   CSEWN AM K+TGW R 
Sbjct: 734  AQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNVAMTKLTGWHRD 793

Query: 791  EVI---------------------------------GITGQGTENFPFGFFNRQGQFVEV 817
            EVI                                  + G+  E  PFG F+R G+++E 
Sbjct: 794  EVIDKMLLGEVFDSSNASCLLKSKDDFVRLCIIINSALAGEEAEKAPFGLFDRNGKYIEC 853

Query: 818  ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPL 877
             L+ +R+ +A+G V G FCF+ +   DLQ AL  Q   +     ++K  +Y+R  +  PL
Sbjct: 854  LLSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRRLKAFSYMRHAINKPL 913

Query: 878  NGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFL 935
            +G+ +  + L+S+ ++E Q + +  +D+C RQ+  I+  +D   I + +  ++L   EF+
Sbjct: 914  SGMLYSRETLKSTGLNEEQMRQVHVADSCHRQLNKILADLDQDNITDKSSCLDLDMAEFV 973

Query: 936  LGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS 995
            L +++ + VSQV++  + K + +  ++PE      + GD IRLQ +LSDFL   V+ +P 
Sbjct: 974  LEDVVVSAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPV 1033

Query: 996  PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLK 1055
              G V+I        I +    +  + R+ H G G+P+ ++  MY   N+  + EGL L 
Sbjct: 1034 -GGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEQSEEGLSLL 1092

Query: 1056 LSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            +SR LL +MNG +R++RE     F++  EL
Sbjct: 1093 VSRNLLRLMNGDIRHLREAGMSTFILTAEL 1122


>gi|20288|emb|CAA32375.1| phytochrome [Oryza sativa Indica Group]
          Length = 1128

 Score =  989 bits (2557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1109 (45%), Positives = 707/1109 (63%), Gaps = 67/1109 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV-----ISPPEGVPEEQITAYLSKIQRGGL 92
            I+     DA L AE+E+    G SF+YS+ V       P +    E++ AYL  IQR  L
Sbjct: 24   ILAQTTLDAELNAEYEEY---GDSFDYSKLVEAQRTTGPEQQARSEKVIAYLHHIQRAKL 80

Query: 93   IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGA 149
            IQPFGC+LA++E TF +I  SEN  EML   S    S D      IG + R+LFT P   
Sbjct: 81   IQPFGCLLALDEKTFNVIALSENAPEMLTTVSHAVPSVDDPPKLRIGTNVRSLFTDPGTT 140

Query: 150  SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
            +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + AGA
Sbjct: 141  ALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAAGA 198

Query: 210  VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
            +QS KLA  AIS++Q+LPGG + +LC+TVV+++  LTGYDRVM Y FH+DDHGEV +EI 
Sbjct: 199  LQSYKLAAKAISKIQSLPGGSMEVLCNTVVKELFDLTGYDRVMAYKFHEDDHGEVFAEIT 258

Query: 270  RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +  LEPYLG+H+PA DIPQAARFLF +N+VRMICDC A  + +I+ + L   + L  STL
Sbjct: 259  KPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKIIEDESLHLDISLCGSTL 318

Query: 330  RSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHTSP 374
            R+PH CHLQYM NM SIASLVMAV++N  +                 KLWGL+VCHH SP
Sbjct: 319  RAPHSCHLQYMENMNSIASLVMAVVVNENEDDDEVGADQPAQQQKRKKLWGLLVCHHESP 378

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRD-APFSIVTQ 433
            RY+PFPLRYACEFL Q F++ +  E ++  Q+ EK+ILR Q +L DMLLR+ +P SIV+ 
Sbjct: 379  RYVPFPLRYACEFLAQVFAVHVNKEFELERQVREKSILRMQTMLSDMLLRESSPLSIVSG 438

Query: 434  SPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGY 493
            +P+IMDLVKCDGAAL YGG+ W +   PTESQ++DIA+WL + H D TGLSTDSL +AGY
Sbjct: 439  TPNIMDLVKCDGAALLYGGKVWRLQNAPTESQIRDIAFWLSDVHRDSTGLSTDSLHDAGY 498

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGAA LG  +CGMA A+I SKD LFWFRSHTA E++WGGAKH P  KD+  +MHPR SFK
Sbjct: 499  PGAAALGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKHDPSDKDDSRRMHPRLSFK 558

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLEVVK +S PW   E++AIHSLQ+++R +  +  +   +    N Q    K+ G+ EL
Sbjct: 559  AFLEVVKMKSLPWNDYEMDAIHSLQLILRGTLNDDIKPTRAASLDN-QVGDLKLDGLAEL 617

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
             +V  EMVRL+ETAT PI  VDS+G +NGWN KVAELTGL   EA+G+ ++  V  E S 
Sbjct: 618  QAVTSEMVRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVDEAIGRHILTVVE-ESSV 676

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733
              V+ ++  AL G+E+K V+ +++    ++    V ++VNAC SRD  ++V GVCFV QD
Sbjct: 677  PVVQRMLYLALQGKEEKEVKFEVKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQD 736

Query: 734  ITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI 793
            +T  K++MDKF R++GDY+AII + +PLIPPIF +DE   CSEWNAAM K+TGW R EVI
Sbjct: 737  MTVHKLVMDKFTRVEGDYKAIIHNPSPLIPPIFGADEFGWCSEWNAAMTKLTGWHRDEVI 796

Query: 794  ---------------------------------GITGQGTENFPFGFFNRQGQFVEVALT 820
                                              + G  TE  PF FF+R G+++E  L+
Sbjct: 797  NKMLLGEVFDSTNASCLVKNKDAFVSLCILINSALAGDETEKAPFSFFDRNGKYIECLLS 856

Query: 821  ASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGI 880
             +R+ +A+G + G FCF+Q+   +LQ AL  Q     +   K+K  +Y+R  + NPL+G+
Sbjct: 857  VNRKVNADGVITGVFCFIQVPSHELQHALHVQQASQQNALTKLKAYSYMRHAINNPLSGM 916

Query: 881  RFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCI--EEGNMELKSEEFLLGN 938
             +  K L+++ ++E Q + +  +D+C RQ+  I+  +D   +  +   ++L+  EF+L +
Sbjct: 917  LYSRKALKNTGLNEEQMKEVNVADSCHRQLNKILSDLDQDSVMNKSSCLDLEMVEFVLQD 976

Query: 939  ILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDG 998
            +  A VSQV++  + K + +  ++PE     ++ GD +RLQ +LSDFL   V+ +P   G
Sbjct: 977  VFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFSPV-GG 1035

Query: 999  WVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSR 1058
             VEI        I +    + ++ R+ H G+G+P+ L+  MY   N+  + EG+ L +SR
Sbjct: 1036 SVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSR 1095

Query: 1059 KLLIMMNGRVRYVRENSKCYFVIDLELKT 1087
             LL +MNG VR++RE     F++ +EL +
Sbjct: 1096 NLLRLMNGDVRHMREAGMSTFILSVELAS 1124


>gi|39777239|gb|AAR30889.1| phytochrome A [Sorghum bicolor]
 gi|39777245|gb|AAR30892.1| phytochrome A [Sorghum bicolor subsp. verticilliflorum]
          Length = 1131

 Score =  989 bits (2556), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1110 (45%), Positives = 705/1110 (63%), Gaps = 73/1110 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            I+     DA L AE+E+S   G SF+YS+ ++      P EQ      + AYL  IQRG 
Sbjct: 24   ILAQTTLDAELNAEYEES---GDSFDYSK-LVEAQRSTPSEQQGRSGKVIAYLQHIQRGK 79

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA++E +FR+I +SEN  EML   S +    +D    G IG + R+LFT P 
Sbjct: 80   LIQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLG-IGTNVRSLFTDPG 138

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
              +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + A
Sbjct: 139  ATALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAA 196

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AIS++Q+LPGG +  LC+TVV++V +LTGYDRVM Y FH+D+HGEV +E
Sbjct: 197  GALQSYKLAAKAISKIQSLPGGSMEALCNTVVKEVFELTGYDRVMAYKFHEDEHGEVFAE 256

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  +EPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V +I+ + L   + L  S
Sbjct: 257  ITKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKSVKIIEDEALSIDISLCGS 316

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHT 372
            TLR+PH CHLQYM NM SIASLVMAV++N  +                 +LWGL+VCHH 
Sbjct: 317  TLRAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEPGPEQPPQQQKKKRLWGLIVCHHE 376

Query: 373  SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIV 431
            SPRY+PFPLRYACEFL Q F++ +  E ++  Q+ EK+ILR Q +L DML ++A P SIV
Sbjct: 377  SPRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQTMLSDMLFKEASPLSIV 436

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            + SP+IMDLVKCDGAAL YG + W +   PTESQ++DIA+WL   HGD TGLSTDSL +A
Sbjct: 437  SGSPNIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDA 496

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
            GYPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  KD+  +MHPR S
Sbjct: 497  GYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLS 556

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGS-KMQGV 610
            FKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +    +  G   Q G  K+ G+
Sbjct: 557  FKAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKP--VQASGLDNQIGDLKLDGL 614

Query: 611  DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
             EL +V  EMVRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V +
Sbjct: 615  AELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHIL-TLVED 673

Query: 671  ESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFV 730
             S   V+ ++  AL G+E+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV
Sbjct: 674  SSVSIVQRMLYLALQGKEEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFV 733

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
             QD+T  K++MDKF R++GDY+AII + NPLIPPIF +D+   CSEWN AM K+TGW R 
Sbjct: 734  AQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNVAMTKLTGWHRD 793

Query: 791  EVI---------------------------------GITGQGTENFPFGFFNRQGQFVEV 817
            EVI                                  + G+  E  PFG F+R G+++E 
Sbjct: 794  EVIDKMLLGEVFDSSNASCLLKSKDDFVRLCIIINSALAGEEAEKAPFGLFDRNGKYIEC 853

Query: 818  ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPL 877
             L+ +R+ +A+G V G FCF+ +   DLQ AL  Q   +     ++K  +Y+R  +  PL
Sbjct: 854  LLSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRRLKAFSYMRHAINKPL 913

Query: 878  NGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFL 935
            +G+ +  + L+S+ ++E Q + +  +D+C RQ+  I+  +D   I + +  ++L   EF+
Sbjct: 914  SGMLYSRETLKSTGLNEEQMRQVHVADSCHRQLNKILADLDQDNITDKSSCLDLDMAEFV 973

Query: 936  LGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS 995
            L +++ + VSQV++  + K + +  ++PE      + GD IRLQ +LSDFL   V+ +P 
Sbjct: 974  LEDVVVSAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPV 1033

Query: 996  PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLK 1055
              G V+I        I +    +  + R+ H G G+P+ ++  MY   N+  + EGL L 
Sbjct: 1034 -GGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEQSEEGLSLL 1092

Query: 1056 LSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            +SR LL +MNG +R++RE     F++  EL
Sbjct: 1093 VSRNLLRLMNGNIRHLREAGMSTFILTAEL 1122


>gi|39777235|gb|AAR30887.1| phytochrome A [Sorghum bicolor]
          Length = 1131

 Score =  988 bits (2555), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1110 (45%), Positives = 705/1110 (63%), Gaps = 73/1110 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            I+     DA L AE+E+S   G SF+YS+ ++      P EQ      + AYL  IQRG 
Sbjct: 24   ILAQTTLDAELNAEYEES---GDSFDYSK-LVEAQRSTPSEQQGRSGKVIAYLQHIQRGK 79

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA++E +FR+I +SEN  EML   S +    +D    G IG + R+LFT P 
Sbjct: 80   LIQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLG-IGTNVRSLFTDPG 138

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
              +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + A
Sbjct: 139  ATALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAA 196

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AIS++Q+LPGG +  LC+TVV++V +LTGYDRVM Y FH+D+HGEV +E
Sbjct: 197  GALQSYKLAAKAISKIQSLPGGSMEALCNTVVKEVFELTGYDRVMAYKFHEDEHGEVFAE 256

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  +EPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V +I+ + L   + L  S
Sbjct: 257  ITKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKSVKIIEDEALSIDISLCGS 316

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHT 372
            TLR+PH CHLQYM NM SIASLVMAV++N  +                 +LWGL+VCHH 
Sbjct: 317  TLRAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEPGPEQPPQQQKKKRLWGLIVCHHE 376

Query: 373  SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIV 431
            SPRY+PFPLRYACEFL Q F++ +  E ++  Q+ EK+ILR Q +L DML ++A P SIV
Sbjct: 377  SPRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQTMLSDMLFKEASPLSIV 436

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            + SP+IMDLVKCDGAAL YG + W +   PTESQ++DIA+WL   HGD TGLSTDSL +A
Sbjct: 437  SGSPNIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDA 496

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
            GYPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  KD+  +MHPR S
Sbjct: 497  GYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLS 556

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGS-KMQGV 610
            FKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +    +  G   Q G  K+ G+
Sbjct: 557  FKAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKP--VQASGLDNQIGDLKLDGL 614

Query: 611  DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
             EL +V  EMVRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V +
Sbjct: 615  AELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHIL-TLVED 673

Query: 671  ESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFV 730
             S   V+ ++  AL G+E+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV
Sbjct: 674  SSVSIVQRMLYLALQGKEEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFV 733

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
             QD+T  K++MDKF R++GDY+AII + NPLIPPIF +D+   CSEWN AM K+TGW R 
Sbjct: 734  AQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNVAMTKLTGWHRD 793

Query: 791  EVI---------------------------------GITGQGTENFPFGFFNRQGQFVEV 817
            EVI                                  + G+  E  PFG F+R G+++E 
Sbjct: 794  EVIDKMLLGEVFDSSNASCLLKSKDDFVRLCIIINSALAGEEAEKAPFGLFDRNGKYIEC 853

Query: 818  ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPL 877
             L+ +R+ +A+G V G FCF+ +   DLQ AL  Q   +     ++K  +Y+R  +  PL
Sbjct: 854  LLSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRRLKAFSYMRHAINKPL 913

Query: 878  NGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFL 935
            +G+ +  + L+S+ ++E Q + +  +D+C RQ+  I+  +D   I + +  ++L   EF+
Sbjct: 914  SGMLYSRETLKSTGLNEEQMRQVHVADSCHRQLNKILADLDQDNITDKSSCLDLDMAEFV 973

Query: 936  LGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS 995
            L +++ + VSQV++  + K + +  ++PE      + GD IRLQ +LSDFL   V+ +P 
Sbjct: 974  LEDVVVSAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPV 1033

Query: 996  PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLK 1055
              G V+I        I +    +  + R+ H G G+P+ ++  MY   N+  + EGL L 
Sbjct: 1034 -GGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEPSEEGLSLL 1092

Query: 1056 LSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            +SR LL +MNG +R++RE     F++  EL
Sbjct: 1093 VSRNLLRLMNGNIRHLREAGMSTFILTAEL 1122


>gi|115454991|ref|NP_001051096.1| Os03g0719800 [Oryza sativa Japonica Group]
 gi|122246800|sp|Q10DU0.1|PHYA_ORYSJ RecName: Full=Phytochrome A
 gi|158513187|sp|A2XLG5.2|PHYA_ORYSI RecName: Full=Phytochrome A
 gi|21321786|gb|AAM47309.1|AF377946_11 phytochrome A [Oryza sativa Japonica Group]
 gi|30578176|dbj|BAC76431.1| phytochrome A [Oryza sativa Japonica Group]
 gi|50540697|gb|AAT77854.1| phytochrome [Oryza sativa Japonica Group]
 gi|108710785|gb|ABF98580.1| Phytochrome A, putative, expressed [Oryza sativa Japonica Group]
 gi|113549567|dbj|BAF13010.1| Os03g0719800 [Oryza sativa Japonica Group]
 gi|125587730|gb|EAZ28394.1| hypothetical protein OsJ_12374 [Oryza sativa Japonica Group]
 gi|215704150|dbj|BAG92990.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1128

 Score =  986 bits (2548), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1109 (45%), Positives = 706/1109 (63%), Gaps = 67/1109 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSV-----ISPPEGVPEEQITAYLSKIQRGGL 92
            I+     DA L AE+E+    G SF+YS+ V       P +    E++ AYL  IQR  L
Sbjct: 24   ILAQTTLDAELNAEYEEY---GDSFDYSKLVEAQRTTGPEQQARSEKVIAYLHHIQRAKL 80

Query: 93   IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGA 149
            IQPFGC+LA++E TF +I  SEN  EML   S    S D      IG +  +LFT P   
Sbjct: 81   IQPFGCLLALDEKTFNVIALSENAPEMLTTVSHAVPSVDDPPKLRIGTNVWSLFTDPGAT 140

Query: 150  SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
            +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + AGA
Sbjct: 141  ALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAAGA 198

Query: 210  VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
            +QS KLA  AIS++Q+LPGG + +LC+TVV+++  LTGYDRVM Y FH+DDHGEV +EI 
Sbjct: 199  LQSYKLAAKAISKIQSLPGGSMEVLCNTVVKELFDLTGYDRVMAYKFHEDDHGEVFAEIT 258

Query: 270  RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +  LEPYLG+H+PA DIPQAARFLF +N+VRMICDC A  + +I+ + L   + L  STL
Sbjct: 259  KPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKIIEDESLHLDISLCGSTL 318

Query: 330  RSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHTSP 374
            R+PH CHLQYM NM SIASLVMAV++N  +                 KLWGL+VCHH SP
Sbjct: 319  RAPHSCHLQYMENMNSIASLVMAVVVNENEDDDEVGADQPAQQQKRKKLWGLLVCHHESP 378

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRD-APFSIVTQ 433
            RY+PFPLRYACEFL Q F++ +  E ++  Q+ EK+ILR Q +L DMLLR+ +P SIV+ 
Sbjct: 379  RYVPFPLRYACEFLAQVFAVHVNKEFELERQVREKSILRMQTMLSDMLLRESSPLSIVSG 438

Query: 434  SPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGY 493
            +P+IMDLVKCDGAAL YGG+ W +   PTESQ++DIA+WL + H D TGLSTDSL +AGY
Sbjct: 439  TPNIMDLVKCDGAALLYGGKVWRLQNAPTESQIRDIAFWLSDVHRDSTGLSTDSLHDAGY 498

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGAA LG  +CGMA A+I SKD LFWFRSHTA E++WGGAKH P  KD+  +MHPR SFK
Sbjct: 499  PGAAALGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKHDPSDKDDSRRMHPRLSFK 558

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLEVVK +S PW   E++AIHSLQ+++R +  +  +   +    N Q    K+ G+ EL
Sbjct: 559  AFLEVVKMKSLPWNDYEMDAIHSLQLILRGTLNDDIKPTRAASLDN-QVGDLKLDGLAEL 617

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
             +V  EMVRL+ETAT PI  VDS+G +NGWN KVAELTGL   EA+G+ ++  V  E S 
Sbjct: 618  QAVTSEMVRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVDEAIGRHILTVVE-ESSV 676

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733
              V+ ++  AL G+E+K V+ +++    ++    V ++VNAC SRD  ++V GVCFV QD
Sbjct: 677  PVVQRMLYLALQGKEEKEVKFEVKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVAQD 736

Query: 734  ITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI 793
            +T  K++MDKF R++GDY+AII + +PLIPPIF +DE   CSEWNAAM K+TGW R EVI
Sbjct: 737  MTVHKLVMDKFTRVEGDYKAIIHNPSPLIPPIFGADEFGWCSEWNAAMTKLTGWHRDEVI 796

Query: 794  ---------------------------------GITGQGTENFPFGFFNRQGQFVEVALT 820
                                              + G  TE  PF FF+R G+++E  L+
Sbjct: 797  NKMLLGEVFDSTNASCLVKNKDAFVSLCILINSALAGDETEKAPFSFFDRNGKYIECLLS 856

Query: 821  ASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGI 880
             +R+ +A+G + G FCF+Q+   +LQ AL  Q     +   K+K  +Y+R  + NPL+G+
Sbjct: 857  VNRKVNADGVITGVFCFIQVPSHELQHALHVQQASQQNALTKLKAYSYMRHAINNPLSGM 916

Query: 881  RFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCI--EEGNMELKSEEFLLGN 938
             +  K L+++ ++E Q + +  +D+C RQ+  I+  +D   +  +   ++L+  EF+L +
Sbjct: 917  LYSRKALKNTGLNEEQMKEVNVADSCHRQLNKILSDLDQDSVMNKSSCLDLEMVEFVLQD 976

Query: 939  ILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDG 998
            +  A VSQV++  + K + +  ++PE     ++ GD +RLQ +LSDFL   V+ +P   G
Sbjct: 977  VFVAAVSQVLITCQGKGIRVSCNLPERYMKQTVYGDGVRLQQILSDFLFVSVKFSPV-GG 1035

Query: 999  WVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSR 1058
             VEI        I +    + ++ R+ H G+G+P+ L+  MY   N+  + EG+ L +SR
Sbjct: 1036 SVEISCSLTKNSIGENLHLIDLELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSR 1095

Query: 1059 KLLIMMNGRVRYVRENSKCYFVIDLELKT 1087
             LL +MNG VR++RE     F++ +EL +
Sbjct: 1096 NLLRLMNGDVRHMREAGMSTFILSVELAS 1124


>gi|37926849|gb|AAP06787.1| phytochrome A1 apoprotein [Zea mays]
 gi|414872502|tpg|DAA51059.1| TPA: phytochromeA1 [Zea mays]
          Length = 1131

 Score =  983 bits (2540), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1104 (45%), Positives = 699/1104 (63%), Gaps = 69/1104 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ-----ITAYLSKIQRGGL 92
            I+     DA L AE+E+S   G SF+YS+ V +     PE+Q     + AYL  IQRG L
Sbjct: 24   ILAQTTLDAELNAEYEES---GDSFDYSKLVEAQRSTPPEQQGRSGKVIAYLQHIQRGKL 80

Query: 93   IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
            IQPFGC+LA++E +FR+I +SEN  EML   S +    +D    G IG + R+LFT P  
Sbjct: 81   IQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLG-IGTNVRSLFTDPGA 139

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
             +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + AG
Sbjct: 140  TALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAAG 197

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AIS++Q+LPGG +  LC+TVV++V  LTGYDRVM Y FH+D+HGEV +EI
Sbjct: 198  ALQSYKLAAKAISKIQSLPGGSMQALCNTVVKEVFDLTGYDRVMAYKFHEDEHGEVFAEI 257

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             +  +EPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V +I+ + L   + L  ST
Sbjct: 258  TKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSVKIIEDEALSIDISLCGST 317

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHTS 373
            LR+PH CHLQYM NM SIASLVMAV++N  +                 KLWGL+VCHH S
Sbjct: 318  LRAPHSCHLQYMENMNSIASLVMAVVVNENEDDDEPESEQPPQQQKRKKLWGLIVCHHES 377

Query: 374  PRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVT 432
            PRY+PFPLRYACEFL Q F++ +  E ++  Q+ EK+ILR Q +L DML +++ P SIV+
Sbjct: 378  PRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQTMLSDMLFKESSPLSIVS 437

Query: 433  QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
             SP+IMDLVKCDGAAL YG + W +   PTESQ++DIA+WL   HGD TGLSTDSL +AG
Sbjct: 438  GSPNIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDAG 497

Query: 493  YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
            YPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  +D+  +MHPR SF
Sbjct: 498  YPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDEDDSRRMHPRLSF 557

Query: 553  KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612
            KAFLEVVK +S PW   E++AIHSLQ+++R +  +  +   S    N Q    K+ G+ E
Sbjct: 558  KAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKPAQSSGLDN-QIGDLKLDGLAE 616

Query: 613  LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
            L +V  EMVRL+ETAT PI  VD +G +NGWN KVA+L+GL   EA+G+ ++  +V + S
Sbjct: 617  LQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVADLSGLRVDEAIGRHIL-TLVEDSS 675

Query: 673  QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQ 732
               V+ ++  AL G E+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV Q
Sbjct: 676  VPIVQRMLYLALQGREEKEVRFELKTHGSKRDDGPVILVVNACASRDMHDHVVGVCFVAQ 735

Query: 733  DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV 792
            D+T  K++MDKF R++GDY AII + NPLIPPIF +D+   CSEWNAAM K+TGW R EV
Sbjct: 736  DMTVHKLVMDKFTRVEGDYRAIIHNPNPLIPPIFGADQFGWCSEWNAAMTKLTGWHRDEV 795

Query: 793  I---------------------------------GITGQGTENFPFGFFNRQGQFVEVAL 819
            I                                  + G+  E  P GFF+R G+++E  L
Sbjct: 796  IDRMLLGEVFDSSNASCLLKSKDAFVRLCIIINSALAGEEAEKAPIGFFDRDGKYIECLL 855

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            + +R+ +A+G V G FCF+ +   DLQ AL  Q   +     ++K  +Y+R  +  PL+G
Sbjct: 856  SVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTALRRLKAFSYMRHAIDKPLSG 915

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFLLG 937
            + +  + L+ + + E Q + +  +D C RQ+  I+  +D   I + +  ++L   EF+L 
Sbjct: 916  MLYSRETLKGTDLDEEQMRQVRVADNCHRQLNKILADLDQDNITDKSSCLDLDMAEFVLQ 975

Query: 938  NILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPD 997
            +++ + VSQV++  + K + +  ++PE      + GD IRLQ +LSDFL   V+ +P+  
Sbjct: 976  DVVVSAVSQVLIGCQGKGIRVACNLPERSMKQKVYGDGIRLQQILSDFLFVSVKFSPA-G 1034

Query: 998  GWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLS 1057
            G V+I        I +    +  + R+ H G G+P+ ++  MY   N+  + EGL L +S
Sbjct: 1035 GSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYGEDNREQSEEGLSLLVS 1094

Query: 1058 RKLLIMMNGRVRYVRENSKCYFVI 1081
            R LL +MNG +R++RE     F++
Sbjct: 1095 RNLLRLMNGDIRHLREAGMSTFIL 1118


>gi|130186|sp|P19862.1|PHYA1_MAIZE RecName: Full=Phytochrome A
 gi|29293912|gb|AAO73469.1| phytochrome A2 [Zea mays]
 gi|129560387|gb|ABO30572.1| phytochrome A2 [Zea mays]
 gi|413933241|gb|AFW67792.1| phytochrome A [Zea mays]
          Length = 1131

 Score =  982 bits (2538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1109 (45%), Positives = 702/1109 (63%), Gaps = 71/1109 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ-----ITAYLSKIQRGGL 92
            I+     DA L AE+E+S   G SF+YS+ V +     PE+Q     + AYL  IQRG L
Sbjct: 24   ILAQTTLDAELNAEYEES---GDSFDYSKLVEAQRSTPPEQQGRSGKVIAYLQHIQRGKL 80

Query: 93   IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
            IQPFGC+LA++E +FR+I +SEN  EML   S +    +D    G IG + R+LFT P  
Sbjct: 81   IQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLG-IGTNVRSLFTDPGA 139

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
             +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + AG
Sbjct: 140  TALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAAG 197

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AIS++Q+LPGG +  LC+TVV++V  LTGYDRVM Y FH+D+HGEV +EI
Sbjct: 198  ALQSYKLAAKAISKIQSLPGGSMEALCNTVVKEVFDLTGYDRVMAYKFHEDEHGEVFAEI 257

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             +  +EPY+G+H+PA DIPQAARFLF +N+VRMICDC A  V +I+ + L   + L  ST
Sbjct: 258  TKPGIEPYIGLHYPATDIPQAARFLFMKNKVRMICDCRARSVKIIEDEALSIDISLCGST 317

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSK---------------DSMKLWGLVVCHHTS 373
            LR+PH CHL+YM NM SIASLVMAV++N                    +LWGL+VCHH S
Sbjct: 318  LRAPHSCHLKYMENMNSIASLVMAVVVNENEEDDEPEPEQPPQQQKKKRLWGLIVCHHES 377

Query: 374  PRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVT 432
            PRY+PFPLRYACEFL Q F++ +  E ++  Q+ EKNILR Q +L DML +++ P SIV+
Sbjct: 378  PRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIREKNILRMQTMLSDMLFKESSPLSIVS 437

Query: 433  QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
             SP+IMDLVKCDGAAL YG + W +   PTESQ++DIA+WL   HGD TGLSTDSL +AG
Sbjct: 438  GSPNIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDAG 497

Query: 493  YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
            YPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  KD+  +MHPR SF
Sbjct: 498  YPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLSF 557

Query: 553  KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGS-KMQGVD 611
            KAFLEVVK +S PW   E++AIHSLQ+++R +  +  +   ++  G   Q G  K+ G+ 
Sbjct: 558  KAFLEVVKTKSLPWSDYEMDAIHSLQLILRGTLNDASKP--AQASGLDNQIGDLKLDGLA 615

Query: 612  ELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEE 671
            EL +V  EMVRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V + 
Sbjct: 616  ELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHIL-TLVEDS 674

Query: 672  SQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVG 731
            S   V+ ++  AL G E+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV 
Sbjct: 675  SVSLVQRMLYLALQGREEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFVA 734

Query: 732  QDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHE 791
            QD+T  K++MDKF R++GDY+AII + NPLIPPIF +D+   CSEWNAAM K+TGW R E
Sbjct: 735  QDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNAAMTKLTGWHRDE 794

Query: 792  VI---------------------------------GITGQGTENFPFGFFNRQGQFVEVA 818
            V+                                  + G+  E   FGFF+R  ++VE  
Sbjct: 795  VVDKMLLGEVFNSSNASCLLKSKDAFVRLCIVINSALAGEEAEKASFGFFDRNEKYVECL 854

Query: 819  LTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLN 878
            L+ +R+ +A+G V G FCF+ +   DLQ AL  Q   +     K+K  +Y+R  +  PL+
Sbjct: 855  LSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRKLKAFSYMRHAINKPLS 914

Query: 879  GIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFLL 936
            G+ +  + L+S+ ++E Q + +   D C RQ+  I+  +D   I + +  ++L   EF+L
Sbjct: 915  GMLYSRETLKSTGLNEEQMRQVRVGDNCHRQLNKILADLDQDNITDKSSCLDLDMAEFVL 974

Query: 937  GNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSP 996
             +++ + VSQV++  + K + +  ++PE      + GD IRLQ ++SDFL   V+ +P+ 
Sbjct: 975  QDVVVSAVSQVLIGCQAKGIRVACNLPERSMKQKVYGDGIRLQQIVSDFLFVSVKFSPA- 1033

Query: 997  DGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKL 1056
             G V+I        I +    +  + R+ H G G+P+ ++  MY   N+  + EG  L +
Sbjct: 1034 GGSVDISSKLTKNSIGENLHLIDFELRIKHRGAGVPAEILSQMYEEDNKEQSEEGFSLAV 1093

Query: 1057 SRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            SR LL +MNG +R++RE     F++  EL
Sbjct: 1094 SRNLLRLMNGDIRHLREAGMSTFILTAEL 1122


>gi|39777259|gb|AAR30899.1| phytochrome A [Sorghum propinquum]
          Length = 1131

 Score =  981 bits (2537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1110 (45%), Positives = 701/1110 (63%), Gaps = 73/1110 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ------ITAYLSKIQRGG 91
            I+     DA L AE+E+S   G SF+YS+ ++      P EQ      + AYL  IQRG 
Sbjct: 24   ILAQTTLDAELNAEYEES---GDSFDYSK-LVEAQRSTPSEQQGRSGKVIAYLQHIQRGK 79

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPS 147
            LIQPFGC+LA +E +FR+I +SEN  EML   S +    +D    G IG + R+LFT P 
Sbjct: 80   LIQPFGCLLAFDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLG-IGTNVRSLFTDPG 138

Query: 148  GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
              +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + A
Sbjct: 139  ATALQKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAA 196

Query: 208  GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
            GA+QS KLA  AIS++Q+LPGG +  LC+TVV++V +LTGYDRVM Y FH+D+HGEV +E
Sbjct: 197  GALQSYKLAAKAISKIQSLPGGSMEALCNTVVKEVFELTGYDRVMAYKFHEDEHGEVFAE 256

Query: 268  IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
            I +  +EPYLG+H+PA DIPQAARFLF +N+VRMICDC A  V +I+ + L   + L  S
Sbjct: 257  ITKPGIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKSVKIIEDEALSIDISLCGS 316

Query: 328  TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------------MKLWGLVVCHHT 372
            TLR+PH CHLQYM NM SIASLVMAV++N  +                 +LWGL+VCHH 
Sbjct: 317  TLRAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEPGPEQPPQQQKKKRLWGLIVCHHE 376

Query: 373  SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIV 431
            SPRY+PFPLRYACEFL Q F++ +  E ++  Q+ EK+ILR Q +L DML ++A P SIV
Sbjct: 377  SPRYVPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQTMLSDMLFKEASPLSIV 436

Query: 432  TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            + SP+IMDLVKCDGAAL YG + W +   PTESQ++DIA+WL   HGD TGLSTDSL +A
Sbjct: 437  SGSPNIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDA 496

Query: 492  GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
             YPGAA LG  +CGMA A+ITSKD LFWFRSHTA E+KWGGAKH P  KD+  +MHPR S
Sbjct: 497  RYPGAASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLS 556

Query: 552  FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGS-KMQGV 610
            FKAFLEVVK +S PW   E++AIHSLQ+++R +  +  +    +  G   Q G  K+ G+
Sbjct: 557  FKAFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKP--VQASGLDNQIGDLKLDGL 614

Query: 611  DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
             EL +V  EMVRL+ETAT PI  VD +G +NGWN KVAEL+GL   EA+G+ ++  +V +
Sbjct: 615  AELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHIL-TLVED 673

Query: 671  ESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFV 730
             S   V+ ++  AL G E+K V  +L+    ++    V ++VNAC SRD  ++V GVCFV
Sbjct: 674  SSVSIVQRMLYLALQGREEKEVRFELKTHGSKRDDGPVILVVNACASRDLHDHVVGVCFV 733

Query: 731  GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
             QD+T  K++MDKF R++GDY+AII + NPLIPPIF +D+   CSEWN AM K+TGW R 
Sbjct: 734  AQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADQFGWCSEWNVAMTKLTGWHRD 793

Query: 791  EVI---------------------------------GITGQGTENFPFGFFNRQGQFVEV 817
            EVI                                  + G+  E   FG F+R G+++E 
Sbjct: 794  EVIDKMLLGEVFDSSNASCLLKSKDDFVRLCIIINSALAGEEAEKAQFGLFDRNGKYIEC 853

Query: 818  ALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPL 877
             L+ +R+ +A+G V G FCF+ +   DLQ AL  Q   +     ++K  +Y+R  +  PL
Sbjct: 854  LLSVNRKVNADGVVTGVFCFIHVPSDDLQHALHVQQASEQTAQRRLKAFSYMRHAINKPL 913

Query: 878  NGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFL 935
            +G+ +  + L+S+ ++E Q + +  +D+C RQ+  I+  +D   I + +  ++L   EF+
Sbjct: 914  SGMLYSRETLKSTGLNEEQMRQVHVADSCHRQLNKILADLDQDNITDKSSCLDLDMAEFV 973

Query: 936  LGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS 995
            L +++ + VSQV++  + K + +  ++PE      + GD IRLQ +LSDFL   V+ +P 
Sbjct: 974  LEDVVVSAVSQVLIGCQGKGIRVACNLPERFMKQKVYGDGIRLQQILSDFLFVSVKFSPV 1033

Query: 996  PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLK 1055
              G V+I        I +    +  + R+ H G G+P+ ++  MY   N+  + EGL L 
Sbjct: 1034 -GGSVDISSKLTKNSIGENLHLIDFELRIKHQGAGVPAEILSQMYEEDNKEQSEEGLSLL 1092

Query: 1056 LSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            +SR LL +MNG +R++RE     F++  EL
Sbjct: 1093 VSRNLLRLMNGDIRHLREAGMSTFILTAEL 1122


>gi|406685523|gb|AFS51202.1| phytochrome P, partial [Lepidothamnus laxifolius]
          Length = 670

 Score =  981 bits (2536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/673 (70%), Positives = 548/673 (81%), Gaps = 22/673 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNG----- 133
           AYLS++QRGG IQPFGCMLAVEE  F+II YSEN LEMLD+  +   + D   +G     
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETNFKIIAYSENALEMLDIMPQYVPNMDLGKSGGGGAV 60

Query: 134 -LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVI 192
             IG D RTLFT     +L KA+ ++EISL+NPI VHS      KPFYAI+HRIDVG+VI
Sbjct: 61  LTIGTDVRTLFTAAGARALEKASMAQEISLMNPIWVHSQYAG--KPFYAIVHRIDVGMVI 118

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           DLEP+K+GD A+S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM
Sbjct: 119 DLEPAKTGDAAMSAAGAVQSQKLAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVM 178

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
           +Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV V
Sbjct: 179 VYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKV 238

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMK 362
           IQS++L Q LCLV STLR+PHGCH QYM NMGSIASL MAV+IN  D          SMK
Sbjct: 239 IQSQDLMQLLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVVINGNDEEGGGTSGRSSMK 298

Query: 363 LWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDML 422
           LWGLVVCHHTSPR +PFPLRY CEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDML
Sbjct: 299 LWGLVVCHHTSPRAVPFPLRYGCEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDML 358

Query: 423 LRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTG 482
           LRDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TG
Sbjct: 359 LRDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIADWLLEYHGDSTG 418

Query: 483 LSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDN 542
           LSTDSLA+AGYPGAA LG AVCGMA ARITS DFLFWFRSHTAKE+KWGGAKHHP+ KD+
Sbjct: 419 LSTDSLADAGYPGAASLGDAVCGMAAARITSNDFLFWFRSHTAKEMKWGGAKHHPDDKDD 478

Query: 543 GGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQ 602
           G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++E+ N +K   + + 
Sbjct: 479 GRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIEDSN-TKTMVHARL 537

Query: 603 NGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKS 662
           N  K+QG+DELSSVA EMVRLIETATAPI  VDS G +NGWNAKVAELTGLP  EAMG+S
Sbjct: 538 NDLKLQGIDELSSVASEMVRLIETATAPILAVDSEGLVNGWNAKVAELTGLPVGEAMGES 597

Query: 663 LIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKN 722
           L+ ++V EES   VE ++ RA+ GEE+KN+E+KLR F  QKQ   +Y++VNAC+SRDY +
Sbjct: 598 LVHDLVCEESAECVEKMLNRAVRGEEEKNIEIKLRTFGPQKQKEAIYLVVNACSSRDYTD 657

Query: 723 NVKGVCFVGQDIT 735
           N+ GVCFV QD+T
Sbjct: 658 NIVGVCFVAQDVT 670


>gi|351722971|ref|NP_001238286.1| phytochrome A [Glycine max]
 gi|1172495|sp|P42500.1|PHYA_SOYBN RecName: Full=Phytochrome A
 gi|515749|gb|AAA33957.1| phytochrome A [Glycine max]
 gi|515751|gb|AAA33999.1| phytochrome A [Glycine max]
          Length = 1131

 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1105 (46%), Positives = 702/1105 (63%), Gaps = 69/1105 (6%)

Query: 43   NADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAV 102
              DA + A FE+S +S    +  R V    +GV + +     +   RG +IQPFGC+LA+
Sbjct: 26   TVDAKIHATFEESGSSFDYSSSVR-VSGTADGVNQPRSDKVTTAYLRGKMIQPFGCLLAI 84

Query: 103  EEP----TFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
            +E     T ++I YSEN  EML + S +     D    G IG D +TLFT PS + L KA
Sbjct: 85   DEKNHMQTCKVIAYSENEPEMLTMVSHAVPSVGDHPALG-IGTDIKTLFTAPSVSGLQKA 143

Query: 155  AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
                ++SLLNPILVH  +    KPFYAI+HR+   +++D EP K  +  ++ AGA+QS K
Sbjct: 144  LGCADVSLLNPILVHCKTSG--KPFYAIVHRVTGSLIVDFEPVKPYEVPMTAAGALQSYK 201

Query: 215  LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
            LA  AI+RLQ+LP G++  LCDT+V++V +LTGYDRVM Y FH+DDHGEV+ EI +  LE
Sbjct: 202  LAAKAITRLQSLPSGNMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIREITKPCLE 261

Query: 275  PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
            PYLG+H+PA DIPQA+RFLF++N+VRMI DCHA  V V+Q ++L+  L L  STLR+PH 
Sbjct: 262  PYLGLHYPATDIPQASRFLFRKNKVRMIVDCHAKHVRVLQDEKLQFDLILCGSTLRAPHS 321

Query: 335  CHLQYMTNMGSIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLR 382
            CH QYM NM SIASLV+AV++N  +            + +LWGLVVCH+T+PR++PFPLR
Sbjct: 322  CHAQYMANMDSIASLVLAVVVNDNEEDGDTDAVQPQKTERLWGLVVCHNTTPRFVPFPLR 381

Query: 383  YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
            YA EFL Q F+  ++ E+++  Q+ EKNIL     L  ML+RDAP  I ++SP+IMDLVK
Sbjct: 382  YAREFLPQVFADHVHKEIELEYQIIEKNILHHPGHLLCMLMRDAPLGIASESPNIMDLVK 441

Query: 443  CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
            CDGAAL Y  + W +GVTP+E Q+++IA WL   H D T  STDSL +AG+P A  LG  
Sbjct: 442  CDGAALIYRNKVWRLGVTPSEPQIREIALWLSEYHMDSTSFSTDSLFDAGFPSALSLGDV 501

Query: 503  VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
            VCGMA+ R+T+KD +FWFRSHTA E++WGGAKH    KD+  +MHPRSSFKAFLEVVK R
Sbjct: 502  VCGMASVRVTAKDMVFWFRSHTAAEIRWGGAKHEAGEKDDSRRMHPRSSFKAFLEVVKAR 561

Query: 563  SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG-NTQQNGSKMQGVD--------EL 613
            S PW+  E++AIHSLQI++R++F+E  E  D   +  NT+    K++G++        EL
Sbjct: 562  SLPWKEYEMDAIHSLQIILRNAFKEDTESLDLNAKAINTRLRDLKIEGINDLKIERMQEL 621

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
             +V  E+VRL  TAT PI  VD  G +NGWN K+AELTGLP  EA GK L+  +V + S 
Sbjct: 622  EAVTSEIVRLDYTATVPILAVDVDGLVNGWNIKIAELTGLPIGEATGKHLL-TLVEDSST 680

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733
              V+ ++  ALLGEE+KNV+ +++    +     + ++VN C SRD ++NV GVCFV  D
Sbjct: 681  DRVKKMLNLALLGEEEKNVQFEIKTLGSKMDSGPISLVVNRCASRDLRDNVVGVCFVAHD 740

Query: 734  ITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI 793
            IT +K +MDKFIR++GDY+AI+Q+ NPLIPPIF +DE   C EWN AM K+TGW R EV+
Sbjct: 741  ITAQKNVMDKFIRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMMKLTGWKREEVM 800

Query: 794  ---------------------------------GITGQGTENFPFGFFNRQGQFVEVALT 820
                                              +TG  TE  PFGFF R G++VE  L+
Sbjct: 801  DKMLLGEIFGTQMAACRLKNQEAFVNLGVVLNKAMTGSETEKVPFGFFARNGKYVECLLS 860

Query: 821  ASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGI 880
             S++ D EG V G FCF+Q+  P+LQ AL  Q L +     ++  L+Y++++++NPL GI
Sbjct: 861  VSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEQTASKRLNALSYMKRQIRNPLCGI 920

Query: 881  RFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNIL 940
             F  K+LE + +   Q+Q L TS  C++Q+  I+D  DL  I +G ++L+  EF L  +L
Sbjct: 921  VFSRKMLEGTDLGTEQKQLLRTSAQCQQQLSKILDDSDLDTIIDGYLDLEMAEFTLHEVL 980

Query: 941  DAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWV 1000
               +SQVM     K++ +++D+   I   +L GD +RLQ VL+DFL   +   P+    V
Sbjct: 981  VTSLSQVMEKSNGKSIRIVNDVAGHIMMETLYGDSLRLQQVLADFLLISINFTPNGGQVV 1040

Query: 1001 EIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKL 1060
                L   +L K     V ++  +TH G G+P  L+  M+ G N   + EG+ L +  KL
Sbjct: 1041 VAGSLTKEQLGKSV-HLVKLELSITHGGSGVPEVLLNQMF-GNNGLESEEGISLLIRAKL 1098

Query: 1061 LIMMNGRVRYVRENSKCYFVIDLEL 1085
            L +MNG VRY+RE  K  F++  EL
Sbjct: 1099 LKLMNGDVRYLREAGKSAFILSAEL 1123


>gi|406685615|gb|AFS51248.1| phytochrome P, partial [Prumnopitys ladei]
          Length = 662

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/665 (70%), Positives = 545/665 (81%), Gaps = 22/665 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGCMLAVEE  F+II YS+N LEMLDL  +S  + +L         
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEEMGFKIIAYSQNALEMLDLMPQSVPNMDLGKPGGGGAV 60

Query: 134 -LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVI 192
              G D RTLFTP S  +L KAA +REISL+NPI VHS      KPFYAI+HRIDVGIVI
Sbjct: 61  LTTGTDVRTLFTPASARALEKAAMAREISLMNPIWVHSQYTG--KPFYAIVHRIDVGIVI 118

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           DLEP + GD  +S AGAVQSQKL+V AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM
Sbjct: 119 DLEPVRMGDATMSAAGAVQSQKLSVRAISRLQSLPAGDIGLLCDTVVEDVRELTGYDRVM 178

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
           +Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV V
Sbjct: 179 VYKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKV 238

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMK 362
           +QS+EL+QP+CLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D          SMK
Sbjct: 239 VQSEELRQPICLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGDDEEGGGTSGRVSMK 298

Query: 363 LWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDML 422
           LWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDML
Sbjct: 299 LWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDML 358

Query: 423 LRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTG 482
           LRDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TG
Sbjct: 359 LRDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIADWLLEYHGDSTG 418

Query: 483 LSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDN 542
           LSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+
Sbjct: 419 LSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDD 478

Query: 543 GGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQ 602
           G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ N +K   + + 
Sbjct: 479 GRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSN-TKTMVHARL 537

Query: 603 NGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKS 662
           N  K+QG+DEL+SVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKS
Sbjct: 538 NDIKLQGIDELTSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKS 597

Query: 663 LIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKN 722
           L+ ++V EES  +VE ++ RAL G+E+KNVE+KLR F  QKQ   +Y++ NAC+SRDY +
Sbjct: 598 LVHDLVFEESAESVEKMLYRALRGDEEKNVEVKLRTFGPQKQKEAIYLVANACSSRDYTD 657

Query: 723 NVKGV 727
           N+ GV
Sbjct: 658 NIVGV 662


>gi|406685611|gb|AFS51246.1| phytochrome P, partial [Prumnopitys andina]
          Length = 661

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/664 (70%), Positives = 545/664 (82%), Gaps = 22/664 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC LAVEE  F+II YS+N LEMLDL  +S  + +L         
Sbjct: 1   AYLSRMQRGGTIQPFGCTLAVEETGFKIIAYSQNALEMLDLMPQSVPNMDLGKPGGGGAV 60

Query: 134 -LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVI 192
             IG D RTLFTP S  +L KAA  REISL+NPI VHS      KPFYAI+HRIDVGIVI
Sbjct: 61  LAIGTDVRTLFTPASARALEKAAMGREISLMNPIWVHSQYTG--KPFYAIVHRIDVGIVI 118

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           DLEP ++GD A+S AGAVQSQKLAV AISRLQ+LP GD+GLLCDTVVEDV++LTGYDRVM
Sbjct: 119 DLEPVRTGDAAMSAAGAVQSQKLAVRAISRLQSLPAGDVGLLCDTVVEDVRELTGYDRVM 178

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
           +Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNR+RMICDC A PV V
Sbjct: 179 VYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRMRMICDCSAAPVKV 238

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMK 362
           +QS+EL+QPLCLV STLR+PHGCH QYM NMGS+ASLVMAVIIN  D          SMK
Sbjct: 239 VQSEELRQPLCLVGSTLRAPHGCHAQYMANMGSVASLVMAVIINGNDEEGGGTSGRISMK 298

Query: 363 LWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDML 422
           LWGLVVCHHTSPR +PF LRYACEFL+QAF LQL MELQ+A Q+ EK+ILRTQ LLCDML
Sbjct: 299 LWGLVVCHHTSPRAVPFSLRYACEFLMQAFGLQLNMELQLAAQMTEKHILRTQTLLCDML 358

Query: 423 LRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTG 482
           LRDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TG
Sbjct: 359 LRDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIADWLLEYHGDSTG 418

Query: 483 LSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDN 542
           LSTDSLA+AG+PGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+
Sbjct: 419 LSTDSLADAGHPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDD 478

Query: 543 GGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQ 602
           G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ N +K   + + 
Sbjct: 479 GRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSN-TKTMVHARL 537

Query: 603 NGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKS 662
           N  K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKS
Sbjct: 538 NDMKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKS 597

Query: 663 LIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKN 722
           L+ ++V EES  +VE ++ RAL G+E+KNVE+KLR F  QKQ   +Y++VNAC+SRDY +
Sbjct: 598 LVQDLVFEESHESVEKMLYRALRGDEEKNVEVKLRTFGPQKQKEAIYLVVNACSSRDYTD 657

Query: 723 NVKG 726
           N+ G
Sbjct: 658 NIVG 661


>gi|186478305|ref|NP_001117256.1| phytochrome A [Arabidopsis thaliana]
 gi|332190342|gb|AEE28463.1| phytochrome A [Arabidopsis thaliana]
          Length = 1014

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/998 (49%), Positives = 662/998 (66%), Gaps = 52/998 (5%)

Query: 135  IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
            IG D R+LFT PS ++L KA    ++SLLNPILVH   R+  KPFYAI+HR+   I+ID 
Sbjct: 17   IGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHC--RTSAKPFYAIIHRVTGSIIIDF 74

Query: 195  EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
            EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y
Sbjct: 75   EPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAY 134

Query: 255  NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
             FH+DDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A    V+Q
Sbjct: 135  KFHEDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHARVLQ 194

Query: 315  SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------- 360
             ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D               
Sbjct: 195  DEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDATTQPQKR 254

Query: 361  MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCD 420
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLCD
Sbjct: 255  KRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELDNQMVEKNILRTQTLLCD 314

Query: 421  MLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDC 480
            ML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G TP+E  L++IA WL   H D 
Sbjct: 315  MLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSEFHLQEIASWLCEYHMDS 374

Query: 481  TGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHK 540
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+ +
Sbjct: 375  TGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPDDR 434

Query: 541  DNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNT 600
            D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +     +
Sbjct: 435  DDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSETTDVNTKVIYS 494

Query: 601  QQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMG 660
            + N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGL   EA+G
Sbjct: 495  KLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLSVDEAIG 554

Query: 661  KSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDY 720
            K  +  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD 
Sbjct: 555  KHFL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRDL 613

Query: 721  KNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAA 780
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+EWN A
Sbjct: 614  HENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTEWNPA 673

Query: 781  MEKVTGWMRHEVI---------------------------------GITGQGTENFPFGF 807
            M K+TG  R EVI                                  +T Q  E   F F
Sbjct: 674  MSKLTGLKREEVIDKMLLGEVFGTQKSCCRLKNQEAFVNLGIVLNNAVTSQDPEKVSFAF 733

Query: 808  FNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELA 867
            F R G++VE  L  S++ D EG V G FCF+Q+   +LQ AL  Q L +     ++K LA
Sbjct: 734  FTRGGKYVECLLCVSKKLDREGVVTGVFCFLQLASHELQQALHVQRLAERTAVKRLKALA 793

Query: 868  YIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNM 927
            YI+++++NPL+GI F  K++E + +   QR+ L+TS  C++Q+  I+D  DL  I EG +
Sbjct: 794  YIKRQIRNPLSGIMFTRKMIEGTELGPEQRRILQTSALCQKQLSKILDDSDLESIIEGCL 853

Query: 928  ELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLH 987
            +L+ +EF L  +L A  SQVM+    K++ + ++  EE+ + +L GD IRLQ VL+DF+ 
Sbjct: 854  DLEMKEFTLNEVLTASTSQVMMKSNGKSVRITNETGEEVMSDTLYGDSIRLQQVLADFML 913

Query: 988  CVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWT 1047
              V   PS  G + +        +  +    +++ RLTH G GIP  L+  M+ G  +  
Sbjct: 914  MAVNFTPS-GGQLTVSASLRKDQLGRSVHLANLEIRLTHTGAGIPEFLLNQMF-GTEEDV 971

Query: 1048 TPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            + EGL L +SRKL+ +MNG V+Y+R+  K  F+I  EL
Sbjct: 972  SEEGLSLMVSRKLVKLMNGDVQYLRQAGKSSFIITAEL 1009


>gi|166563|gb|AAA76820.1| phytochrome [Avena sativa]
          Length = 1129

 Score =  974 bits (2519), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1109 (45%), Positives = 701/1109 (63%), Gaps = 67/1109 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVP-----EEQITAYLSKIQRGGL 92
            ++     DA L AE+E+S   G SF+YS+ V +  +G P      E++ AYL  IQ+G L
Sbjct: 22   VLAQTTLDAELNAEYEES---GDSFDYSKLVEAQRDGPPVQQGRSEKVIAYLQHIQKGKL 78

Query: 93   IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGA 149
            IQ FGC+LA++E +F +I +SEN  EML   S    S D      IG + R+LF+     
Sbjct: 79   IQTFGCLLALDEKSFNVIAFSENAPEMLTTVSHAVPSVDDPPRLGIGTNVRSLFSDQGAT 138

Query: 150  SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
            +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + AGA
Sbjct: 139  ALHKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAAGA 196

Query: 210  VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
            +QS KLA  AIS++Q+LPGG + +LC+TVV++V  LTGYDRVM Y FH+DDHGEV SEI 
Sbjct: 197  LQSYKLAAKAISKIQSLPGGSMEVLCNTVVKEVFDLTGYDRVMAYKFHEDDHGEVFSEIT 256

Query: 270  RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +  LEPYLG+H+PA DIPQAARFLF +N+VRMICDC A  + VI+++ L   + L  S L
Sbjct: 257  KPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKVIEAEALPFDISLCGSAL 316

Query: 330  RSPHGCHLQYMTNMGSIASLVMAVII---------------NSKDSMKLWGLVVCHHTSP 374
            R+PH CHLQYM NM SIASLVMAV++                 +   KLWGL+VCHH SP
Sbjct: 317  RAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEAESEQPAQQQKKKKLWGLLVCHHESP 376

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVTQ 433
            RY+PFPLRYACEFL Q F++ +  E ++  QL EKNIL+ Q +L DML R+A P +IV+ 
Sbjct: 377  RYVPFPLRYACEFLAQVFAVHVNREFELEKQLREKNILKMQTMLSDMLFREASPLTIVSG 436

Query: 434  SPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGY 493
            +P+IMDLVKCDGAAL YGG+ W +   PTESQ+ DIA+WL + H D TGLSTDSL +AGY
Sbjct: 437  TPNIMDLVKCDGAALLYGGKVWRLRNAPTESQIHDIAFWLSDVHRDSTGLSTDSLHDAGY 496

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGAA LG  +CGMA A+I SKD LFWFRSHTA E++WGGAK+ P   D+  +MHPR SFK
Sbjct: 497  PGAAALGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKNDPSDMDDSRRMHPRLSFK 556

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLEVVK +S PW   E++AIHSLQ+++R +  +  +        N Q    K+ G+ EL
Sbjct: 557  AFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDASKPKREASLDN-QIGDLKLDGLAEL 615

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
             +V  EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V + S 
Sbjct: 616  QAVTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEDSSV 674

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733
              V+ ++  AL G+E+K V  +++    ++    V ++VNAC SRD  ++V GVCFV QD
Sbjct: 675  PVVQRMLYLALQGKEEKEVRFEVKTHGPKRDDGPVILVVNACASRDLHDHVVGVCFVAQD 734

Query: 734  ITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI 793
            +T  K++MDKF R++GDY+AII + NPLIPPIF +DE   CSEWNAAM K+TGW R EV+
Sbjct: 735  MTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADEFGWCSEWNAAMTKLTGWNRDEVL 794

Query: 794  ---------------------------------GITGQGTENFPFGFFNRQGQFVEVALT 820
                                              + G+ TE  PFGFF+R G+++E  L+
Sbjct: 795  DKMLLGEVFDSSNASCPLKNRDAFVSLCVLINSALAGEETEKAPFGFFDRSGKYIECLLS 854

Query: 821  ASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGI 880
            A+R+ +  G + G FCF+ +   +LQ AL+ Q   +     ++K  +Y+R  + NPL+G+
Sbjct: 855  ANRKENEGGLITGVFCFIHVASHELQHALQVQQASEQTSLKRLKAFSYMRHAINNPLSGM 914

Query: 881  RFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFLLGN 938
             +  K L+++ ++E Q + +   D C  QI  I+  +D   I E +  ++L+  EFLL +
Sbjct: 915  LYSRKALKNTDLNEEQMKQIHVGDNCHHQINKILADLDQDSITEKSSCLDLEMAEFLLQD 974

Query: 939  ILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDG 998
            ++ A VSQV++  + K + +  ++PE     S+ GD +RLQ +LSDFL   V+ +P   G
Sbjct: 975  VVVAAVSQVLITCQGKGIRISCNLPERFMKQSVYGDGVRLQQILSDFLFISVKFSPV-GG 1033

Query: 999  WVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSR 1058
             VEI        I +    + ++ R+ H G G+P+ L+  M+   N+  + EGL L +SR
Sbjct: 1034 SVEISSKLTKNSIGENLHLIDLELRIKHQGLGVPAELMAQMFEEDNKEQSEEGLSLLVSR 1093

Query: 1059 KLLIMMNGRVRYVRENSKCYFVIDLELKT 1087
             LL +MNG VR++RE     F+I  EL +
Sbjct: 1094 NLLRLMNGDVRHLREAGVSTFIITAELAS 1122


>gi|406685489|gb|AFS51185.1| phytochrome P, partial [Acmopyle sahniana]
          Length = 659

 Score =  974 bits (2517), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/662 (71%), Positives = 543/662 (82%), Gaps = 20/662 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------L 134
           AYLS++QRGG IQPFGCMLAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGSVLT 60

Query: 135 IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
           IG D RTLFTP    +L KAA + +ISL+NPI VHS      KPF AI+HRIDVGIVIDL
Sbjct: 61  IGTDVRTLFTPSGARALEKAAMAPDISLMNPIWVHSQYTG--KPFNAIVHRIDVGIVIDL 118

Query: 195 EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
           EP ++GD A+S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+Y
Sbjct: 119 EPLRTGDAAMSTAGAVQSQKLAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMVY 178

Query: 255 NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
            FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ
Sbjct: 179 KFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVIQ 238

Query: 315 SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKLW 364
           S+EL+QP CLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKLW
Sbjct: 239 SEELRQPFCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGPSGRSSMKLW 298

Query: 365 GLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLR 424
           GLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLR
Sbjct: 299 GLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLR 358

Query: 425 DAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLS 484
           DAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGLS
Sbjct: 359 DAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGLS 418

Query: 485 TDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGG 544
           TDSLA+AGYPGAALLG AVCGMA ARITSKD+LFW+RSHTAKE+KWGGAKHHP+ KD+G 
Sbjct: 419 TDSLADAGYPGAALLGDAVCGMAAARITSKDYLFWYRSHTAKEMKWGGAKHHPDDKDDGR 478

Query: 545 KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNG 604
           +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N 
Sbjct: 479 RMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI-DDSDTKTMVHARLND 537

Query: 605 SKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLI 664
            K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL+
Sbjct: 538 LKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSLV 597

Query: 665 DEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNV 724
            ++V EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY +N+
Sbjct: 598 HDLVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTDNI 657

Query: 725 KG 726
            G
Sbjct: 658 VG 659


>gi|130182|sp|P06594.3|PHYA4_AVESA RecName: Full=Phytochrome A type 4; Short=AP4
 gi|16113|emb|CAA27000.1| unnamed protein product [Avena sativa]
          Length = 1129

 Score =  973 bits (2516), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1109 (45%), Positives = 702/1109 (63%), Gaps = 67/1109 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVP-----EEQITAYLSKIQRGGL 92
            ++     DA L AE+E+S   G SF+YS+ V +  +G P      E++ AYL  IQ+G L
Sbjct: 22   VLAQTTLDAELNAEYEES---GDSFDYSKLVEAQRDGPPVQQGRSEKVIAYLQHIQKGKL 78

Query: 93   IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGA 149
            IQ FGCMLA++E +F +I +SEN  EML   S    S D      IG + R+LF+     
Sbjct: 79   IQTFGCMLALDEKSFNVIAFSENAPEMLTTVSHAVPSVDDPPRLGIGTNVRSLFSDQGAT 138

Query: 150  SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
            +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + AGA
Sbjct: 139  ALHKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAAGA 196

Query: 210  VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
            +QS KLA  AIS++Q+LPGG + +LC+TVV++V  LTGYDRVM Y FH+DDHGEV +EI 
Sbjct: 197  LQSYKLAAKAISKIQSLPGGSMEVLCNTVVKEVFDLTGYDRVMAYKFHEDDHGEVFAEIT 256

Query: 270  RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +  LEPYLG+H+PA DIPQAARFLF +N+VRMICDC A  + VI+++ L   + L  S L
Sbjct: 257  KPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKVIEAEALPFDISLCGSAL 316

Query: 330  RSPHGCHLQYMTNMGSIASLVMAVII---------------NSKDSMKLWGLVVCHHTSP 374
            R+PH CHLQYM NM SIASLVMAV++                 +   KLWGL+VCHH SP
Sbjct: 317  RAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEAESEQPAQQQQKKKLWGLLVCHHESP 376

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVTQ 433
            RY+PFPLRYACEFL Q F++ +  E ++  QL EK+IL+ Q +L DML R+A P +IV+ 
Sbjct: 377  RYVPFPLRYACEFLAQVFAVHVNREFELEKQLREKSILKMQTMLSDMLFREASPLTIVSG 436

Query: 434  SPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGY 493
            +P+IMDLVKCDGAAL YGG+ W +   PTESQ+ DIA+WL + H D TGLSTDSL +AGY
Sbjct: 437  APNIMDLVKCDGAALLYGGKVWRLRNAPTESQIHDIAFWLSDVHRDSTGLSTDSLHDAGY 496

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGA+ LG  +CGMA A+I SKD +FWFRSHTA E++WGGAKH     D+  +MHPR SFK
Sbjct: 497  PGASALGDMICGMAVAKINSKDIIFWFRSHTAAEIRWGGAKHDSSDMDDSRRMHPRLSFK 556

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLEVVK +S PW   E++AIHSLQ+++R +  +  +        N Q    K+ G+ EL
Sbjct: 557  AFLEVVKMKSLPWTDYEMDAIHSLQLILRGTLNDASKPKREASLDN-QIGDLKLDGLAEL 615

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
             +V  EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V E S 
Sbjct: 616  QAVTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEESSV 674

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733
              V+ ++  AL G+E+K V  +++    ++    V ++VNAC SRD  ++V GVCFV QD
Sbjct: 675  PVVQRMLYLALQGKEEKEVRFEVKTHGPRRDDGPVILVVNACASRDLHDHVVGVCFVAQD 734

Query: 734  ITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI 793
            +T  K++MDKF R++GDY+AII + NPLIPPIF +DE   CSEWNAAM K+TGW R EV+
Sbjct: 735  MTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADEFGWCSEWNAAMTKLTGWNRDEVL 794

Query: 794  ---------------------------------GITGQGTENFPFGFFNRQGQFVEVALT 820
                                              + G+ TE  PFGFF+R G+++E  L+
Sbjct: 795  DKMLLGEVFDSSNASCPLKNKNAFVSLCVLINSALAGEETEKAPFGFFDRSGKYIECLLS 854

Query: 821  ASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGI 880
            A+R+ +  G + G FCF+ +   +LQ AL+ Q   +     ++K  +Y+R  + NPL+G+
Sbjct: 855  ANRKENEGGLITGVFCFIHVASHELQHALQVQQASEQTSLKRLKAFSYMRHAINNPLSGM 914

Query: 881  RFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFLLGN 938
             +  K L+++ ++E Q + +   D C  QI  I+  +D   I E +  ++L+  EF+  +
Sbjct: 915  LYSRKALKNTDLNEEQMKQIHVGDNCHHQINKILADLDQDSISEKSSCLDLEMAEFVFQD 974

Query: 939  ILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDG 998
            ++ A VSQV++  + K + +  ++PE     S+ GD +RLQ +LSDFL   V+ +P   G
Sbjct: 975  VVVAAVSQVLITCQGKGIRISCNLPERFMKQSVYGDGVRLQQILSDFLFISVKFSPV-GG 1033

Query: 999  WVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSR 1058
             VEI        I +    + ++ R+ H G G+P+ L+E M+   N+  + EGLGL +SR
Sbjct: 1034 SVEISSKLTKNSIGENLHLIDLELRIKHQGLGVPAELMEQMFEEDNKEQSDEGLGLLVSR 1093

Query: 1059 KLLIMMNGRVRYVRENSKCYFVIDLELKT 1087
            KLL +MNG VR++RE     F++  EL +
Sbjct: 1094 KLLRLMNGDVRHLREAGVSTFILTAELAS 1122


>gi|130181|sp|P06593.3|PHYA3_AVESA RecName: Full=Phytochrome A type 3; Short=AP3
 gi|16111|emb|CAA26999.1| unnamed protein product [Avena sativa]
          Length = 1129

 Score =  972 bits (2512), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1109 (45%), Positives = 700/1109 (63%), Gaps = 67/1109 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVP-----EEQITAYLSKIQRGGL 92
            ++     DA L AE+E+S   G SF+YS+ V +  +G P      E++ AYL  IQ+G L
Sbjct: 22   VLAQTTLDAELNAEYEES---GDSFDYSKLVEAQRDGPPVQQGRSEKVIAYLQHIQKGKL 78

Query: 93   IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGA 149
            IQ FGC+LA++E +F +I +SEN  EML   S    S D      IG + R+LF+     
Sbjct: 79   IQTFGCLLALDEKSFNVIAFSENAPEMLTTVSHAVPSVDDPPRLGIGTNVRSLFSDQGAT 138

Query: 150  SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
            +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + AGA
Sbjct: 139  ALHKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAAGA 196

Query: 210  VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
            +QS KLA  AIS++Q+LPGG + +LC+TVV++V  LTGYDRVM Y FH+DDHGEV SEI 
Sbjct: 197  LQSYKLAAKAISKIQSLPGGSMEVLCNTVVKEVFDLTGYDRVMAYKFHEDDHGEVFSEIT 256

Query: 270  RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +  LEPYLG+H+PA DIPQAAR LF +N+VRMICDC A  + VI+++ L   + L  S L
Sbjct: 257  KPGLEPYLGLHYPATDIPQAARLLFMKNKVRMICDCRARSIKVIEAEALPFDISLCGSAL 316

Query: 330  RSPHGCHLQYMTNMGSIASLVMAVII---------------NSKDSMKLWGLVVCHHTSP 374
            R+PH CHLQYM NM SIASLVMAV++                 +   KLWGL+VCHH SP
Sbjct: 317  RAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEAESEQPAQQQKKKKLWGLLVCHHESP 376

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVTQ 433
            RY+PFPLRYACEFL Q F++ +  E ++  QL EKNIL+ Q +L DML R+A P +IV+ 
Sbjct: 377  RYVPFPLRYACEFLAQVFAVHVNREFELEKQLREKNILKMQTMLSDMLFREASPLTIVSG 436

Query: 434  SPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGY 493
            +P+IMDLVKCDGAAL YGG+ W +   PTESQ+ DIA+WL + H D TGLSTDSL +AGY
Sbjct: 437  TPNIMDLVKCDGAALLYGGKVWRLRNAPTESQIHDIAFWLSDVHRDSTGLSTDSLHDAGY 496

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGAA LG  +CGMA A+I SKD LFWFRSHTA E++WGGAK+ P   D+  +MHPR SFK
Sbjct: 497  PGAAALGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKNDPSDMDDSRRMHPRLSFK 556

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLEVVK +S PW   E++AIHSLQ+++R +  +  +        N Q    K+ G+ EL
Sbjct: 557  AFLEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDASKPKREASLDN-QIGDLKLDGLAEL 615

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
             +V  EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V + S 
Sbjct: 616  QAVTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEDSSV 674

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733
              V+ ++  AL G+E+K V  +++    ++    V ++VNAC SRD  ++V GVCFV QD
Sbjct: 675  PVVQRMLYLALQGKEEKEVRFEVKTHGPKRDDGPVILVVNACASRDLHDHVVGVCFVAQD 734

Query: 734  ITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI 793
            +T  K++MDKF R++GDY+AII + NPLIPPIF +DE   CSEWNAAM K+TGW R EV+
Sbjct: 735  MTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADEFGWCSEWNAAMTKLTGWNRDEVL 794

Query: 794  ---------------------------------GITGQGTENFPFGFFNRQGQFVEVALT 820
                                              + G+ TE  PFGFF+R G+++E  L+
Sbjct: 795  DKMLLGEVFDSSNASCPLKNRDAFVSLCVLINSALAGEETEKAPFGFFDRSGKYIECLLS 854

Query: 821  ASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGI 880
            A+R+ +  G + G FCF+ +   +LQ AL+ Q   +     ++K  +Y+R  + NPL+G+
Sbjct: 855  ANRKENEGGLITGVFCFIHVASHELQHALQVQQASEQTSLKRLKAFSYMRHAINNPLSGM 914

Query: 881  RFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFLLGN 938
             +  K L+++ ++E Q + +   D C  QI  I+  +D   I E +  ++L+  EFLL +
Sbjct: 915  LYSRKALKNTDLNEEQMKQIHVGDNCHHQINKILADLDQDSITEKSSCLDLEMAEFLLQD 974

Query: 939  ILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDG 998
            ++ A VSQV++  + K + +  ++PE     S+ GD +RLQ +LSDFL   V+ +P   G
Sbjct: 975  VVVAAVSQVLITCQGKGIRISCNLPERFMKQSVYGDGVRLQQILSDFLFISVKFSPV-GG 1033

Query: 999  WVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSR 1058
             VEI        I +    + ++ R+ H G G+P+ L+  M+   N+  + EGL L +SR
Sbjct: 1034 SVEISSKLTKNSIGENLHLIDLELRIKHQGLGVPAELMAQMFEEDNKEQSEEGLSLLVSR 1093

Query: 1059 KLLIMMNGRVRYVRENSKCYFVIDLELKT 1087
             LL +MNG VR++RE     F+I  EL +
Sbjct: 1094 NLLRLMNGDVRHLREAGVSTFIITAELAS 1122


>gi|227452669|dbj|BAH57345.1| phytochrome A [Glycine max]
          Length = 1094

 Score =  972 bits (2512), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1008 (48%), Positives = 669/1008 (66%), Gaps = 63/1008 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSVISPPEGVP-------EEQITAYLSKIQRGGLIQPFG 97
            DA L A FE+S +S    +  R  +SP   V        +   ++YL + Q+  LIQPFG
Sbjct: 33   DAKLHATFEESGSSFDYSSSVR--MSPAGTVSGDHQPRSDRATSSYLHQTQKIKLIQPFG 90

Query: 98   CMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAK 153
            C+LA++E T ++I YSEN  EML + S +     D    G IG D RT+FT PS A++ K
Sbjct: 91   CLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALG-IGTDIRTIFTAPSSAAIQK 149

Query: 154  AAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQ 213
            A    ++SL NPILVH  +    KPFYAI+HR+   ++ID EP K  +  ++ +GA+QS 
Sbjct: 150  ALRFGDVSLHNPILVHCKTSG--KPFYAIIHRVTGSVIIDFEPVKPHEVPMTASGALQSY 207

Query: 214  KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL 273
            KLA  AI+RL++L  G++  LC+T+V +V +LTGYDRVM Y FH+DDHGEV++E++R  L
Sbjct: 208  KLAAKAITRLESLTTGNMETLCNTMVREVFELTGYDRVMAYKFHEDDHGEVIAEVKRPGL 267

Query: 274  EPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPH 333
            EPYLG+H+PA DIPQA RFLF +N+VRMI DC A  V V+Q K++   L L  STLR+ H
Sbjct: 268  EPYLGLHYPATDIPQATRFLFMKNKVRMIVDCCAKHVNVLQDKKIPFDLTLCGSTLRAAH 327

Query: 334  GCHLQYMTNMGSIASLVMAVIINSKD-------------SMKLWGLVVCHHTSPRYIPFP 380
             CHLQYM NM S ASLVMAV++N  D             S +LWGLVVCHHT+PR++PFP
Sbjct: 328  SCHLQYMENMNSSASLVMAVVVNDNDEDGDSSDAVQPQKSKRLWGLVVCHHTTPRFVPFP 387

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
            LRYAC+FL Q F++ +  EL++  Q+ EKNIL+TQ LLCDML++  P  IV+QSP+IMDL
Sbjct: 388  LRYACQFLAQVFAVHVSKELEIEYQIIEKNILQTQTLLCDMLVQGEPLGIVSQSPNIMDL 447

Query: 441  VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
            VKCDGAAL Y  + W +GVTP+ESQ+K+IA WL   H D TG  TDSL++AG+PGAA LG
Sbjct: 448  VKCDGAALLYKNKVWRLGVTPSESQIKEIALWLFECHEDSTGFCTDSLSDAGFPGAAALG 507

Query: 501  QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
               CGMA ARI SKD LFWFRSHTA E++WGGAKH P  +D+G ++HPRSSFKAFLEVVK
Sbjct: 508  DIACGMAAARIASKDILFWFRSHTASEIRWGGAKHEPGERDDGRRVHPRSSFKAFLEVVK 567

Query: 561  NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
             RS PW+  E +AIHSLQ+++RD+F+E +    S    +T+    K++G+ EL +V  E+
Sbjct: 568  TRSLPWKTYETDAIHSLQLILRDAFKETQSMEISTYAIDTRLGDLKIEGMQELDAVTSEV 627

Query: 621  VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
            VRLIETAT PI  VD +G INGWN K+AELTGLP  EA+GK L+  +V + S   V+ ++
Sbjct: 628  VRLIETATVPILAVDVNGMINGWNTKIAELTGLPVDEAIGKHLL-TLVEDFSVDRVKKML 686

Query: 681  CRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVL 740
              AL GEE++NV+ +++   ++     + ++VNAC SRD ++NV GVCF+ QDIT +K +
Sbjct: 687  DMALQGEEERNVQFEIQTHHMKIDSGPISLVVNACASRDLQDNVVGVCFLAQDITAQKTM 746

Query: 741  MDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------- 793
            MDKF R++GDY+AI+Q+ NPLIPPIF +DE   C EWN+AM K+TGW R EV+       
Sbjct: 747  MDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNSAMAKLTGWKREEVMDKMLLGE 806

Query: 794  --------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDA 827
                                       + G  TE  PFGFF R G+ VE  L+ +++ DA
Sbjct: 807  VFGTQIACCRLRNHEAVVNFSIVLNTAMAGLETEKVPFGFFARDGKHVECILSMTKKLDA 866

Query: 828  EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLL 887
            EG V G FCF+Q+   +LQ AL  Q + +     ++K+L Y++++++NPL GI F  KLL
Sbjct: 867  EGVVTGVFCFLQLASAELQQALHIQRISEQTSLKRLKDLTYLKRQIQNPLYGIMFSRKLL 926

Query: 888  ESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQV 947
            E + +   Q+Q+L+T   C+RQI  I+D  DL  I +G M+L+  EF L  +L A +SQV
Sbjct: 927  EGTELGAEQKQFLQTGIRCQRQISKILDDSDLDSIIDGYMDLEMVEFTLHEVLVASLSQV 986

Query: 948  MVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS 995
            M     K + +++D+ E+I   +L GD IRLQ VL+DFL   +   P+
Sbjct: 987  MTKSNAKGIRVVNDVEEKITTETLYGDSIRLQQVLADFLLISINFTPT 1034


>gi|406685541|gb|AFS51211.1| phytochrome P, partial [Phyllocladus hypophyllus]
          Length = 661

 Score =  971 bits (2511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/664 (70%), Positives = 546/664 (82%), Gaps = 22/664 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGCMLAVEE  F+II YS+N LEMLDL  +S  + +L         
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETNFKIIAYSQNALEMLDLMPQSVPNMDLGKPGGGGAV 60

Query: 134 -LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVI 192
             IG D R+LFT  S  +L KA+ ++EISL+NPI VHS      KPFYAI+HRIDVG+VI
Sbjct: 61  LTIGTDVRSLFTVASARALQKASMAQEISLMNPIWVHSQYTG--KPFYAIVHRIDVGMVI 118

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           DLEP ++GD ALS AGAVQSQ+LAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM
Sbjct: 119 DLEPVRTGDAALSAAGAVQSQRLAVRAISRLQSLPAGDIGLLCDTVVEDVRELTGYDRVM 178

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
           +Y FH+D+HGEVV+EIRR+DLEPY G+H+PA DIPQA+RFLF QNRVRMICDC A PV V
Sbjct: 179 VYKFHEDEHGEVVAEIRRADLEPYQGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKV 238

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMK 362
           IQS+EL+QPLCLV STLR+PHGCH QYM NMGS+ASLVMAV+IN  D          SMK
Sbjct: 239 IQSEELRQPLCLVGSTLRAPHGCHAQYMANMGSVASLVMAVVINGNDEEGGGTSGRSSMK 298

Query: 363 LWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDML 422
           LWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDML
Sbjct: 299 LWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDML 358

Query: 423 LRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTG 482
           LRDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TG
Sbjct: 359 LRDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIADWLLEYHGDSTG 418

Query: 483 LSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDN 542
           LSTDSLA+AGYPGAA LG AVCGMA ARITS DFLFWFRSHTAKE+KWGGAKHHP+ KD+
Sbjct: 419 LSTDSLADAGYPGAASLGDAVCGMAAARITSNDFLFWFRSHTAKEMKWGGAKHHPDDKDD 478

Query: 543 GGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQ 602
           G +MHPRSSFKAFLEVVK RSFPWE  E++AIHSLQ+++R SFQ++E+ N +K   +T+ 
Sbjct: 479 GRRMHPRSSFKAFLEVVKRRSFPWENVEMDAIHSLQLILRGSFQDIEDSN-TKTMVHTRL 537

Query: 603 NGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKS 662
           N  K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGL   EAMGKS
Sbjct: 538 NDLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLAVGEAMGKS 597

Query: 663 LIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKN 722
           L+ ++V EES  +V+ ++ RAL GEE++NVE+KLR F  QKQ   +Y++VNAC+SRDY +
Sbjct: 598 LVHDLVFEESAESVDKILYRALRGEEEQNVEIKLRTFGPQKQKEAIYLVVNACSSRDYTD 657

Query: 723 NVKG 726
           N+ G
Sbjct: 658 NIVG 661


>gi|406685511|gb|AFS51196.1| phytochrome P, partial [Dacrydium nausoriense]
          Length = 660

 Score =  969 bits (2505), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/663 (70%), Positives = 542/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL------ 134
           AYLS++QRGG IQP GCMLAVEE  F+II +S+N LEMLDL  +S    EL  L      
Sbjct: 1   AYLSRMQRGGTIQPLGCMLAVEETNFKIIAFSQNALEMLDLMPQSVPTMELGKLGGGEVL 60

Query: 135 -IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  SL KAA + +ISL+NPI VHS      KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARSLEKAAMAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPLRTGDAAMSTAGAVQSQKLAVRAISRLQSLPSGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  I+TQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIMTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + ++V EES   VE ++ RAL GEE+KNVE+KLR F  QK+   +Y++VNAC+SRDY +N
Sbjct: 598 VHDLVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKEKEAIYLVVNACSSRDYTDN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685507|gb|AFS51194.1| phytochrome P, partial [Dacrydium balansae]
          Length = 660

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/663 (70%), Positives = 542/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL------ 134
           AYLS++QRGG IQP GCMLAVEE  F+II +S+N LEMLDL  +S    EL  L      
Sbjct: 1   AYLSRMQRGGTIQPLGCMLAVEETNFKIIAFSQNALEMLDLMPQSVPSMELGKLGGGEVL 60

Query: 135 -IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  SL KAA + +ISL+NPI VHS      KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARSLEKAAMAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPLRTGDAAMSTAGAVQSQKLAVRAISRLQSLPSGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  I+TQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIMTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + ++V EES   VE ++ RAL GEE+KNVE+KLR F +QK+   +Y++VNAC+ RDY +N
Sbjct: 598 VHDLVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGIQKEKEAIYLVVNACSCRDYTDN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685643|gb|AFS51262.1| phytochrome P, partial [Picea breweriana]
          Length = 656

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/660 (71%), Positives = 546/660 (82%), Gaps = 19/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +EMLDL  +S    E  +L  L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAVEMLDLAPQSVPSMEQPQLEVLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASAHSLEKAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P K+GD  +S AGAVQSQKLAV AISRLQ+LP GDI LLCDTVVE+V++LTGYDRVM+Y 
Sbjct: 118 PLKTGDAFVSAAGAVQSQKLAVRAISRLQSLPCGDIELLCDTVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVQVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDDEGAGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEF++QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFMMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PIGIVTQSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+A ITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAAFLGDAVCGMASATITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K   +++ N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLNILR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VD +G +NGWNAKVAELTGLP  EAMG SL+ +
Sbjct: 537 LQGIDELSSVASEMVRLIETATAPILAVDYNGLVNGWNAKVAELTGLPVGEAMGMSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V EES   VE ++C AL GEE+KNVE+ LR F  QKQ   V+++VNAC+SRD+ +N+ G
Sbjct: 597 LVFEESVERVEKMLCNALRGEEEKNVEMILRTFGPQKQKEAVFLVVNACSSRDFTDNIVG 656


>gi|406685605|gb|AFS51243.1| phytochrome P, partial [Podocarpus spinulosus]
          Length = 660

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/663 (70%), Positives = 538/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGVVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP  SGD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRGSGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W VGVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCVGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685509|gb|AFS51195.1| phytochrome P, partial [Dacrydium guillauminii]
          Length = 660

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/663 (70%), Positives = 541/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL------ 134
           AYLS++QRGG IQP GCMLAVEE  F+II +S+N LEMLDL  +S    EL  L      
Sbjct: 1   AYLSRMQRGGTIQPLGCMLAVEETNFKIIAFSQNALEMLDLMPQSVPSMELGKLGGGEVL 60

Query: 135 -IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  SL KAA + +ISL+NPI VHS      KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARSLEKAAMAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPLRTGDAAMSTAGAVQSQKLAVRAISRLQSLPSGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  I+TQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDI  WLL  HGD TGL
Sbjct: 359 RDAPIGIMTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDITEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + ++V EES   VE ++ RAL GEE+KNVE+KLR F  QK+   +Y++VNAC+SRDY +N
Sbjct: 598 VHDLVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKEKEAIYLVVNACSSRDYTDN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685513|gb|AFS51197.1| phytochrome P, partial [Dacrydium xanthandrum]
          Length = 660

 Score =  967 bits (2500), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/663 (70%), Positives = 541/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL------ 134
           AYLS++QRGG IQPFGCMLAVEE  F+II +S+N LEMLDL  +S    EL  L      
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETNFKIIAFSQNALEMLDLMPQSVPSMELGKLGGGEVL 60

Query: 135 -IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S   L KAA + +IS +NPI VHS      KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARGLEKAAMAPDISFMNPIWVHSQYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPLRTGDAAMSTAGAVQSQKLAVRAISRLQSLPSGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  I+TQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIMTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + ++V EES   VE ++ RAL GEE+KNVE+KLR F  QK+   +Y++VNAC+SRDY +N
Sbjct: 598 VHDLVLEESAECVEKMLYRALRGEEEKNVEIKLRIFGTQKEKEAIYLVVNACSSRDYTDN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685505|gb|AFS51193.1| phytochrome P, partial [Dacrycarpus imbricatus]
          Length = 661

 Score =  967 bits (2500), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/664 (70%), Positives = 541/664 (81%), Gaps = 21/664 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG +QPFGCMLAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTLQPFGCMLAVEETNFKIIAYSQNALEMLDLMPQSVPSMELGKRGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP SG +L KAA + +ISL+NPI VHS      KPF AI+HRIDV +VID
Sbjct: 61  TIGTDVRTLFTPSSGRALEKAAMAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVAMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM 
Sbjct: 119 LEPLRTGDAAMSTAGAVQSQKLAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMA 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YRFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGS+ASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSVASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL M+LQ+A Q+ EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMQLQLAAQMTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELT LP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTDLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + ++V EES   V+ ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY +N
Sbjct: 598 VHDIVLEESAECVDKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTDN 657

Query: 724 VKGV 727
           + GV
Sbjct: 658 IVGV 661


>gi|406685525|gb|AFS51203.1| phytochrome P, partial [Manoao colensoi]
          Length = 657

 Score =  966 bits (2498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/660 (70%), Positives = 544/660 (82%), Gaps = 17/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG---LIGI 137
           AYLS++QRGG IQPFGCMLAVEE  F++I YS+N LEMLD+  +S  + +L      IG 
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETNFKVIAYSQNALEMLDIMPQSVPNMDLGKPVLTIGT 60

Query: 138 DARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPS 197
           D RTLFTP S  +L KAA ++EISL+NPI VHS      KPFYAI+HRIDVG+VIDLEP 
Sbjct: 61  DVRTLFTPASARALEKAAMTQEISLMNPIWVHSQHTG--KPFYAIVHRIDVGMVIDLEPL 118

Query: 198 KSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFH 257
           ++GD ++S AGAVQSQKLAV AISRLQ+LP GDIG+LCD+VVEDV++LTGYDRVM Y FH
Sbjct: 119 RTGDASMSAAGAVQSQKLAVRAISRLQSLPAGDIGVLCDSVVEDVRELTGYDRVMAYKFH 178

Query: 258 DDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKE 317
           +D+HGEVV+E+RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI DC A PV VIQS++
Sbjct: 179 EDEHGEVVAEMRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMIFDCSANPVQVIQSEK 238

Query: 318 LKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKLWGLV 367
           +++PLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKLWGLV
Sbjct: 239 MRRPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGAGTSGRSSMKLWGLV 298

Query: 368 VCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAP 427
           VCHHTSPR +PFPLRYACEFL+QAF LQL MEL +A QL EK+ILRTQ LLCDMLLRDAP
Sbjct: 299 VCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELHLAAQLTEKHILRTQTLLCDMLLRDAP 358

Query: 428 FSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDS 487
             IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGLSTDS
Sbjct: 359 IGIVTQSPSIMDLVKCDGAALYYGGTTWSLGVTPTEAQVKDIADWLLEYHGDSTGLSTDS 418

Query: 488 LAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMH 547
           LA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MH
Sbjct: 419 LADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMH 478

Query: 548 PRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM 607
           PRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ N +K   + + N  K+
Sbjct: 479 PRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSN-TKTMVHARLNDLKL 537

Query: 608 QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
           QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  E MGKSL+ ++
Sbjct: 538 QGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGETMGKSLVHDL 597

Query: 668 VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGV 727
           V EES  +V+ ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N+ GV
Sbjct: 598 VFEESAESVQKMLYRALRGEEEKNVEIKLRTFGPQKQKEAIYLVVNACSSRDYTENIVGV 657


>gi|406685613|gb|AFS51247.1| phytochrome P, partial [Prumnopitys ferruginoides]
          Length = 662

 Score =  966 bits (2498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/665 (71%), Positives = 548/665 (82%), Gaps = 22/665 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGCMLAVEE  F+II YS+N LEMLDL  ++  + EL         
Sbjct: 1   AYLSRLQRGGTIQPFGCMLAVEEMGFKIIAYSQNALEMLDLMPQAVPNMELGKPGGGGAV 60

Query: 134 -LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVI 192
             IG D RTLFTP S  +LAKAA +REISL+NPI VHS      KPFYAI+HRIDVGIVI
Sbjct: 61  LTIGTDVRTLFTPASARALAKAAMAREISLMNPIWVHSQYTG--KPFYAIVHRIDVGIVI 118

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           DLEP + GD ++S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM
Sbjct: 119 DLEPVRMGDASMSAAGAVQSQKLAVRAISRLQSLPSGDIGLLCDTVVEDVRELTGYDRVM 178

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
           +Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV V
Sbjct: 179 VYKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSANPVKV 238

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMK 362
           +QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D          SMK
Sbjct: 239 VQSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEEGGWTSGRVSMK 298

Query: 363 LWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDML 422
           LWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDML
Sbjct: 299 LWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDML 358

Query: 423 LRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTG 482
           LRDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TG
Sbjct: 359 LRDAPIGIVTQSPSIMDLVKCDGAALYYGGXTWCLGVTPTEAQIKDIADWLLEYHGDSTG 418

Query: 483 LSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDN 542
           LSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+
Sbjct: 419 LSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDD 478

Query: 543 GGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQ 602
           G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ N +K   + + 
Sbjct: 479 GRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSN-TKTMVHARL 537

Query: 603 NGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKS 662
           N  K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKS
Sbjct: 538 NDMKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKS 597

Query: 663 LIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKN 722
           L+ ++V EES  +VE ++ RAL GEE+KNVE+KLR F  +KQ   +Y++ NAC+SRDY +
Sbjct: 598 LVHDLVFEESAESVEKMLYRALRGEEEKNVEVKLRTFGPKKQKEAIYLVANACSSRDYTD 657

Query: 723 NVKGV 727
           N+ GV
Sbjct: 658 NIVGV 662


>gi|406685499|gb|AFS51190.1| phytochrome P, partial [Dacrycarpus cinctus]
 gi|406685501|gb|AFS51191.1| phytochrome P, partial [Dacrycarpus kinabaluensis]
          Length = 660

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/663 (70%), Positives = 540/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG +QPFGCMLAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTLQPFGCMLAVEETNFKIIAYSQNALEMLDLMPQSVPSMELGKRGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP SG +L KAA + +ISL+NPI VHS      KPF AI+HRIDV +VID
Sbjct: 61  TIGTDVRTLFTPSSGRALEKAAMAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVAMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM 
Sbjct: 119 LEPLRTGDAAMSTAGAVQSQKLAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMA 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YRFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGS+ASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSVASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELT LP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTDLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + ++V EES   V+ ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY +N
Sbjct: 598 VHDIVLEESAECVDKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTDN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685647|gb|AFS51264.1| phytochrome P, partial [Picea mariana]
          Length = 656

 Score =  966 bits (2496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/660 (71%), Positives = 547/660 (82%), Gaps = 19/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +EMLDL  +S    E  +L  L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAVEMLDLAPQSVPSMEQPQLEVLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASAHSLEKAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P K+GD  +S AGAVQSQKLAV AISRLQ+LP GDI LLCD+VVE+V++LTGYDRVM+Y 
Sbjct: 118 PLKTGDAFVSAAGAVQSQKLAVRAISRLQSLPCGDIELLCDSVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVQVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDDEGAGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEF++QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFMMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PIGIVTQSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+ARITSK+FLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAASLGDAVCGMASARITSKEFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K   +++ N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VD +G +NGWNAKVAELTGLP  EAMG SL+ +
Sbjct: 537 LQGIDELSSVASEMVRLIETATAPILAVDYNGLVNGWNAKVAELTGLPVGEAMGMSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V EES   V+ ++C A+ GEE+KNVE+ LR F  QKQ   V+++VNAC+SRD+ NN+ G
Sbjct: 597 LVLEESVERVKKMLCNAIRGEEEKNVEMILRTFGPQKQKEAVFLVVNACSSRDFTNNIVG 656


>gi|406685579|gb|AFS51230.1| phytochrome P, partial [Podocarpus macrophyllus]
          Length = 661

 Score =  966 bits (2496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/664 (70%), Positives = 540/664 (81%), Gaps = 21/664 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV +I
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKMI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKGV 727
           + GV
Sbjct: 658 IVGV 661


>gi|406685635|gb|AFS51258.1| phytochrome P, partial [Larix decidua]
          Length = 655

 Score =  966 bits (2496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/660 (71%), Positives = 549/660 (83%), Gaps = 20/660 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +EMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAVEMLDLAPQSVPSMEQPQPEFLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASAHSLEKAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P K+GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGY+RVM+Y 
Sbjct: 118 PLKTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDIGLLCDTVVENVRELTGYERVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGS+ASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSVASLVMAVIINGNDDEGGGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PMGIVTQSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAASLGDAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K   +++ N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL+ +
Sbjct: 537 LQGMDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V EES   VE ++  AL GEE+KNVE+ LR F  QKQ + V+++VNAC+SRD+ +N+ G
Sbjct: 597 LVFEESVERVEKMLYNALRGEEEKNVEMMLRTFGPQKQEA-VFLVVNACSSRDFTDNIVG 655


>gi|406685561|gb|AFS51221.1| phytochrome P, partial [Podocarpus cunninghamii]
          Length = 660

 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/663 (70%), Positives = 538/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAATAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGPSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+ 
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDS 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   +E ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECLEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685503|gb|AFS51192.1| phytochrome P, partial [Dacrycarpus compactus]
          Length = 661

 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/664 (70%), Positives = 541/664 (81%), Gaps = 21/664 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG +QPFGCM+AVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTLQPFGCMVAVEETNFKIIAYSQNALEMLDLMPQSVPSMELGKRGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP SG +L KAA + +ISL+NPI VHS      KPF AI+HRIDV +VID
Sbjct: 61  TIGTDVRTLFTPSSGRALEKAAMAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVAMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM 
Sbjct: 119 LEPLRTGDAAMSTAGAVQSQKLAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMA 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HG+VV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YRFHEDEHGDVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGS+ASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSVASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELT LP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTDLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + ++V EES   V+ ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY +N
Sbjct: 598 VHDIVLEESAECVDKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTDN 657

Query: 724 VKGV 727
           + GV
Sbjct: 658 IVGV 661


>gi|406685455|gb|AFS51168.1| phytochrome P, partial [Araucaria araucana]
          Length = 675

 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/678 (68%), Positives = 546/678 (80%), Gaps = 36/678 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---------SRSEDFELN 132
           AYL+++QRGG IQPFGC LAVEE +F I+ YSEN +E+LDL           R E    +
Sbjct: 1   AYLTRMQRGGTIQPFGCTLAVEETSFLIVAYSENAVELLDLSPQSVPNMDMDRDEAMGSH 60

Query: 133 G-----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
           G      IG D RTLFTP S  +L KAA ++EIS++NPI VHS  ++  KPFYAI+HRID
Sbjct: 61  GGGRVITIGTDVRTLFTPSSARALEKAAMAQEISMMNPIWVHS--KNTNKPFYAIVHRID 118

Query: 188 VGIVIDLEPSKSG-----DPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
           VG+VIDLEP ++G     D ALS AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV
Sbjct: 119 VGMVIDLEPVRTGSGGGGDAALSAAGAVQSQKLAVRAISRLQSLPTGDIGLLCDTVVEDV 178

Query: 243 QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
           ++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI
Sbjct: 179 RELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMI 238

Query: 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-- 360
           CDC A PV V+Q+ +L+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +   
Sbjct: 239 CDCRAAPVKVVQAGQLQQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEG 298

Query: 361 ------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                       MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 299 GGGGGSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTE 358

Query: 409 KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
           K+ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KD
Sbjct: 359 KHILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKD 418

Query: 469 IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
           IA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMATARITSKDFLFWFRSHTAKE+
Sbjct: 419 IADWLLEYHGDSTGLSTDSLADAGYPGAASLGDAVCGMATARITSKDFLFWFRSHTAKEM 478

Query: 529 KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
           KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++
Sbjct: 479 KWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI 538

Query: 589 EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
           ++ N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVA
Sbjct: 539 DDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVA 597

Query: 649 ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
           ELTGLP  EAMGKSL+ +++ +ES   V+ ++C AL GEE+KNVE+KLR F  QKQ   +
Sbjct: 598 ELTGLPVGEAMGKSLVHDLIFDESANTVDKMLCHALRGEEEKNVEIKLRTFGPQKQKKAI 657

Query: 709 YILVNACTSRDYKNNVKG 726
           Y++VNAC+SRDY +N+ G
Sbjct: 658 YLVVNACSSRDYTDNIVG 675


>gi|406685555|gb|AFS51218.1| phytochrome P, partial [Podocarpus chingianus]
          Length = 660

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/663 (70%), Positives = 539/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685601|gb|AFS51241.1| phytochrome P, partial [Podocarpus salomonensis]
          Length = 660

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/663 (70%), Positives = 538/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KA  + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  SIGTDVRTLFTPSSARALEKAVMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTAWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKELKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ+++    +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDGSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES G VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAGCVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685575|gb|AFS51228.1| phytochrome P, partial [Podocarpus longifoliolatus]
          Length = 660

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/663 (70%), Positives = 540/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NP+ VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPVWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIG+LCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGMLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ + +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSS-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685559|gb|AFS51220.1| phytochrome P, partial [Podocarpus costalis]
          Length = 660

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/663 (70%), Positives = 539/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHCSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685589|gb|AFS51235.1| phytochrome P, partial [Podocarpus polyspermus]
          Length = 660

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/663 (70%), Positives = 539/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NP+ VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPVWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685469|gb|AFS51175.1| phytochrome P, partial [Araucaria hunsteinii]
          Length = 675

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/678 (69%), Positives = 545/678 (80%), Gaps = 36/678 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---------SRSEDFELN 132
           AYL+++QRGG IQPFGCMLAVEE +F+I+ YSEN +EMLDL           R E    +
Sbjct: 1   AYLTRMQRGGTIQPFGCMLAVEETSFQIVAYSENAVEMLDLSPQSVPNMDMDRDEAMGSH 60

Query: 133 G-----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
           G      IG D R LFTP S  +L KAA ++EIS++NPI VHS  ++  KPFYAI+HRID
Sbjct: 61  GGGRVITIGTDVRNLFTPSSARALEKAAMAQEISMMNPIWVHS--KNTNKPFYAIVHRID 118

Query: 188 VGIVIDLEPSKSG-----DPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
           VG+VIDLEP ++G     D ALS AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV
Sbjct: 119 VGMVIDLEPVRTGSGGGGDAALSAAGAVQSQKLAVRAISRLQSLPTGDIGLLCDTVVEDV 178

Query: 243 QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
           ++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI
Sbjct: 179 RELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMI 238

Query: 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-- 360
           CDC A PV V+Q+ ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +   
Sbjct: 239 CDCRAAPVKVVQAGELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEG 298

Query: 361 ------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                       MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 299 GGGGGSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTE 358

Query: 409 KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
           K+ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KD
Sbjct: 359 KHILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKD 418

Query: 469 IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
           IA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMATARITSKDFLFWFRSHTAKE+
Sbjct: 419 IADWLLEYHGDSTGLSTDSLADAGYPGAASLGDAVCGMATARITSKDFLFWFRSHTAKEM 478

Query: 529 KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
           KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++
Sbjct: 479 KWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI 538

Query: 589 EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
           ++ N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVA
Sbjct: 539 DDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVA 597

Query: 649 ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
           ELTGLP  EAMGKSL  +++ +ES   V+ ++  AL GEE+KNVE+KLR F  QKQ   +
Sbjct: 598 ELTGLPVGEAMGKSLAHDLIFDESANTVDKMLYHALRGEEEKNVEIKLRTFGPQKQKKAI 657

Query: 709 YILVNACTSRDYKNNVKG 726
           Y++VNAC+SRDY +N+ G
Sbjct: 658 YLVVNACSSRDYTDNIVG 675


>gi|406685515|gb|AFS51198.1| phytochrome P, partial [Dacrydium elatum]
          Length = 660

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/663 (70%), Positives = 542/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL------ 134
           AYLS++QRGG IQPFGCMLAVEE  F+II +S+N LEMLDL  +S    EL  L      
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETNFKIIAFSQNALEMLDLMPQSVPSMELGKLGGGEVL 60

Query: 135 -IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP    +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSGARALEKAAMAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRV++
Sbjct: 119 LEPLRTGDAAMSTAGAVQSQKLAVRAISRLQSLPSGDIGLLCDTVVEDVRELTGYDRVVV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QLAEK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLAEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  I+TQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIMTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + ++V EES   VE ++ RAL GEE+KNVE+KLR F  QK+   +Y++VNA +SRDY +N
Sbjct: 598 VHDLVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKEKEAIYLVVNAGSSRDYTDN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685595|gb|AFS51238.1| phytochrome P, partial [Podocarpus rubens]
          Length = 660

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/663 (70%), Positives = 539/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGY+RVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYERVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685471|gb|AFS51176.1| phytochrome P, partial [Araucaria laubenfelsii]
          Length = 677

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/680 (69%), Positives = 544/680 (80%), Gaps = 38/680 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---------SRSEDFELN 132
           AYLS++QRGG IQPFGCMLAVEE TF II YSEN +EMLDL           R E    +
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFLIIAYSENAVEMLDLMPQSVPNMDMDRDEAMTSH 60

Query: 133 G-----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
           G      IG D RTLFT  S  +L KAA + EISL+NPI VHS  ++  KPFYAI+HRID
Sbjct: 61  GGGRVMTIGTDVRTLFTTSSARALEKAAMAHEISLMNPIWVHS--KNTNKPFYAIVHRID 118

Query: 188 VGIVIDLEPSKSG-----DPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
           VG+V+DLEP ++G     D ALS AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV
Sbjct: 119 VGMVMDLEPVRTGSGGGGDAALSAAGAVQSQKLAVRAISRLQSLPAGDIGLLCDTVVEDV 178

Query: 243 QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
           ++LTGYDRVM+Y FH+D+HGEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI
Sbjct: 179 RELTGYDRVMVYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMI 238

Query: 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-- 360
           CDC A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +   
Sbjct: 239 CDCRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEG 298

Query: 361 --------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQL 406
                         MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL
Sbjct: 299 GGGGGSGSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQL 358

Query: 407 AEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQL 466
            EK+ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+
Sbjct: 359 TEKHILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQI 418

Query: 467 KDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAK 526
           KDIA WLL  H D TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAK
Sbjct: 419 KDIADWLLEYHVDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAK 478

Query: 527 EVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQ 586
           E+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ
Sbjct: 479 EMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQ 538

Query: 587 EMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAK 646
           ++++ N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAK
Sbjct: 539 DIDDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAK 597

Query: 647 VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706
           VAELTGLP  EAMGKSL+ +++ EES   V+ ++ +AL GEE+KNVE+KLR F  QKQ  
Sbjct: 598 VAELTGLPVGEAMGKSLVHDLIFEESANTVDKMLYQALRGEEEKNVEIKLRTFGPQKQKK 657

Query: 707 VVYILVNACTSRDYKNNVKG 726
            +Y++VNAC+SRDY +N+ G
Sbjct: 658 AIYLVVNACSSRDYTDNIVG 677


>gi|406685521|gb|AFS51201.1| phytochrome P, partial [Lepidothamnus fonkii]
          Length = 661

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/664 (70%), Positives = 541/664 (81%), Gaps = 22/664 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNG----- 133
           AYLS++QRGG IQPFGCMLAVE+  F+II YSEN LEMLD+  +S    D   +G     
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEDTNFKIIAYSENALEMLDIMPQSVPNMDLGKSGGGGAV 60

Query: 134 -LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVI 192
             IG D RTLFTP S  +L KA+ ++EISL+NPI +HS      KPFYAI+H IDVGIVI
Sbjct: 61  LTIGADVRTLFTPASARALEKASMAQEISLMNPIWMHSQYTG--KPFYAIVHGIDVGIVI 118

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           DLEP+K+GD A+S AGAVQSQKL+V A SRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM
Sbjct: 119 DLEPAKTGDAAMSAAGAVQSQKLSVRASSRLQSLPAGDIGLLCDTVVEDVRELTGYDRVM 178

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
           +Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV V
Sbjct: 179 VYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKV 238

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMK 362
           IQS+EL QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMK
Sbjct: 239 IQSQELMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGPSGRSSMK 298

Query: 363 LWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDML 422
           LWGLVVCHHTSPR +PFPLRY CEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDML
Sbjct: 299 LWGLVVCHHTSPRAVPFPLRYGCEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDML 358

Query: 423 LRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTG 482
           LRDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TG
Sbjct: 359 LRDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIADWLLEYHGDSTG 418

Query: 483 LSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDN 542
           LSTDSLA+AGYPGAA LG AVCGMA ARITS DFLFWFRSHTAKE+KWGGAKHHP+ KD+
Sbjct: 419 LSTDSLADAGYPGAASLGDAVCGMAAARITSNDFLFWFRSHTAKEMKWGGAKHHPDDKDD 478

Query: 543 GGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQ 602
             +MHPRSSFKAFLEVVK RS P E  E++AIHSLQ+++R SFQ++E+ N +K   + + 
Sbjct: 479 VRRMHPRSSFKAFLEVVKRRSLPRENVEMDAIHSLQLILRGSFQDIEDSN-TKTMVHARL 537

Query: 603 NGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKS 662
           N  K+QG+DELSSVA EMVRLIETATAPI  VDS G +NGWNAKVAELTGLP  EAMGKS
Sbjct: 538 NDLKLQGIDELSSVATEMVRLIETATAPILAVDSEGLVNGWNAKVAELTGLPVGEAMGKS 597

Query: 663 LIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKN 722
           L+ ++V EES   VE ++ RA+ GEE+KN+E+KLR F  QKQ  V+Y++VNAC+SRDY +
Sbjct: 598 LVHDLVCEESAECVEKMLNRAVRGEEEKNIEIKLRTFGPQKQKEVIYLVVNACSSRDYTD 657

Query: 723 NVKG 726
           N+ G
Sbjct: 658 NIVG 661


>gi|406685475|gb|AFS51178.1| phytochrome P, partial [Araucaria montana]
          Length = 677

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/680 (69%), Positives = 543/680 (79%), Gaps = 38/680 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---------SRSEDFELN 132
           AYLS++QRGG IQPFGCMLAVEE TF II YSEN +EMLDL           R E    +
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFLIIAYSENAVEMLDLMPQSVPNMDMDRDEAMTSH 60

Query: 133 G-----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
           G      IG D RTLFT  S  +L KAA + EISL+NPI VHS  ++  KPFYAI+HRID
Sbjct: 61  GGGRVMTIGTDVRTLFTTSSARALEKAAMAHEISLMNPIWVHS--KNTNKPFYAIVHRID 118

Query: 188 VGIVIDLEPSKSG-----DPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
           VG+V+DLEP ++G     D ALS AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV
Sbjct: 119 VGMVMDLEPVRTGSGGGGDAALSAAGAVQSQKLAVRAISRLQSLPAGDIGLLCDTVVEDV 178

Query: 243 QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
           ++LTGYDRVM+Y FH+D+HGEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI
Sbjct: 179 RELTGYDRVMVYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMI 238

Query: 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-- 360
           CDC A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +   
Sbjct: 239 CDCRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEG 298

Query: 361 --------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQL 406
                         MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL
Sbjct: 299 GGGGGSGSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQL 358

Query: 407 AEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQL 466
            EK+ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+
Sbjct: 359 TEKHILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQI 418

Query: 467 KDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAK 526
           KDIA WLL  H D TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAK
Sbjct: 419 KDIADWLLEYHVDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAK 478

Query: 527 EVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQ 586
           E+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ
Sbjct: 479 EMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQ 538

Query: 587 EMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAK 646
           ++++ N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAK
Sbjct: 539 DIDDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAK 597

Query: 647 VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706
           VAELTGLP  EAMGKSL+ +++ EES   V+ ++  AL GEE+KNVE+KLR F  QKQ  
Sbjct: 598 VAELTGLPVGEAMGKSLVHDLIFEESANTVDKMLYHALRGEEEKNVEIKLRTFGPQKQKK 657

Query: 707 VVYILVNACTSRDYKNNVKG 726
            +Y++VNAC+SRDY +N+ G
Sbjct: 658 AIYLVVNACSSRDYTDNIVG 677


>gi|406685545|gb|AFS51213.1| phytochrome P, partial [Podocarpus lawrencei]
          Length = 660

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/663 (70%), Positives = 538/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFT  S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTASSARALEKAATAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIP+A+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPRASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGPSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   +E ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECLEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685663|gb|AFS51272.1| phytochrome P, partial [Tsuga diversifolia]
          Length = 656

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/660 (71%), Positives = 543/660 (82%), Gaps = 19/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +EMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAVEMLDLAPQSVPSMEQPQPEALTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT PS  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAPSAHSLEKAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P ++GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGYDRVM+Y 
Sbjct: 118 PLRTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDIGLLCDTVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HG VV+EIRRSDLEPYLG+H+PA DIPQA RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGVVVAEIRRSDLEPYLGLHYPATDIPQAFRFLFMQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGS+ASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSVASLVMAVIINGNDDEAGGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PIGIVTQSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+A ITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAASLGDAVCGMASAIITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++ +   +K   + + N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDINDSG-TKTMVHARLNDMR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMG SL+ +
Sbjct: 537 LQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGMSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V EES   VE ++  AL GEE+KNVE+ LR F  QKQ   V+++VNAC+SRD+ +N+ G
Sbjct: 597 LVFEESVERVEKMLYNALRGEEEKNVEMMLRTFGPQKQKEAVFLVVNACSSRDFTDNIVG 656


>gi|406685641|gb|AFS51261.1| phytochrome P, partial [Larix laricina]
          Length = 655

 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/660 (71%), Positives = 549/660 (83%), Gaps = 20/660 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG +QPFGC+LAVEE TFRII YSEN +EMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRMQPFGCVLAVEETTFRIIAYSENAVEMLDLAPQSVPSMEQPQPEVLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASAHSLEKAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P K+GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGY+RVM+Y 
Sbjct: 118 PLKTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDIGLLCDTVVENVRELTGYERVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGS+ASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSVASLVMAVIINGNDDEGGGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PMGIVTQSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAASLGDAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K   +++ N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL+ +
Sbjct: 537 LQGMDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V E+S   VE ++  AL GEE+KNVE+ LR F  QKQ + V+++VNAC+SRD+ +N+ G
Sbjct: 597 LVFEQSVERVEKMLYNALRGEEEKNVEMMLRTFGPQKQEA-VFLVVNACSSRDFTDNIVG 655


>gi|406685603|gb|AFS51242.1| phytochrome P, partial [Podocarpus spathoides]
          Length = 660

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/663 (70%), Positives = 538/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS+++RGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMRRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KA  + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  SIGTDVRTLFTPSSARALEKAVMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKELKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685549|gb|AFS51215.1| phytochrome P, partial [Podocarpus aristulatus]
 gi|406685591|gb|AFS51236.1| phytochrome P, partial [Podocarpus purdieanus]
          Length = 660

 Score =  962 bits (2487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/663 (70%), Positives = 537/663 (80%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEAL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+V+D
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVGMVVD 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVNVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSR-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EE    VE ++ RAL GEE+KNVE+KLR F   KQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEECAECVEKMLYRALRGEEEKNVEIKLRTFGTVKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685529|gb|AFS51205.1| phytochrome P, partial [Pherosphaera fitzgeraldii]
          Length = 660

 Score =  962 bits (2487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/663 (69%), Positives = 542/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNG----- 133
           AYLS++QRGG IQPFGCML VEE  F+II YS+N LEMLDL  +S    D +L       
Sbjct: 1   AYLSRMQRGGTIQPFGCMLTVEETNFKIIAYSQNALEMLDLMPQSVPSMDSKLGAGGAVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D R+LFTP S  +L KA  + +ISL+NPI +HS      KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRSLFTPSSSRALEKAFMAPDISLMNPIWIHSQYTG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPLRTGDAAMSTAGAVQSQKLAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM+NMGSIASL MAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMSNMGSIASLAMAVVINGNDEEGGGTGGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYG   W +GVTP+E+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGATTWCLGVTPSEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITS+DFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAASLGDAVCGMAAARITSRDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI-DDSDTKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAM KSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMSKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + ++V EES  +VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY +N
Sbjct: 598 VHDLVLEESAESVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTDN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685563|gb|AFS51222.1| phytochrome P, partial [Podocarpus dispermus]
          Length = 660

 Score =  962 bits (2487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/663 (70%), Positives = 538/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QN VRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNGVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685617|gb|AFS51249.1| phytochrome P, partial [Retrophyllum comptonii]
          Length = 661

 Score =  962 bits (2487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/664 (70%), Positives = 537/664 (80%), Gaps = 21/664 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+L VEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLTVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP  DIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPLRTGDTAMSTAGAVQSQKFAVRAISRLQSLPTCDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FP+RYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPMRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W + VTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLAVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGA  LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGATTLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKGV 727
           + GV
Sbjct: 658 IVGV 661


>gi|406685649|gb|AFS51265.1| phytochrome P, partial [Pinus strobus]
          Length = 656

 Score =  962 bits (2487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/660 (71%), Positives = 546/660 (82%), Gaps = 19/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG+IQPFGC+LAVEE TFRII YSEN +EMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGIIQPFGCVLAVEETTFRIIAYSENAVEMLDLAPQSVPSMEQSQQEVLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RT FT  S  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VIDLE
Sbjct: 61  TDVRTQFTAASSHSLEKAAVTQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDLE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P ++GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGYDRVM+Y 
Sbjct: 118 PLRTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDIGLLCDTVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVFEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDDEGGGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLR A
Sbjct: 298 VVCHHTSPRPVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRHA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG+CW++GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PMGIVTQSPSIMDLVKCDGAALYYGGKCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+ARITSKDF+FWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAASLGDAVCGMASARITSKDFIFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K   ++Q N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSQLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VD +G +NGWNAKVAELTGLP  EAMG SL+ +
Sbjct: 537 LQGIDELSSVASEMVRLIETATAPILAVDYNGCVNGWNAKVAELTGLPVGEAMGMSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V EES  +VE ++  AL GEE+KNVE+ L+ F  QK+   V ++VNAC+SRD+ +N+ G
Sbjct: 597 LVFEESVESVEKMLYNALRGEEEKNVEMMLKTFGPQKEKKAVILVVNACSSRDFTDNIVG 656


>gi|406685569|gb|AFS51225.1| phytochrome P, partial [Podocarpus fasciculus]
          Length = 660

 Score =  962 bits (2487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/663 (70%), Positives = 538/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV +I
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKMI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE  + RAL GEE+KNVE++LR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKTLYRALRGEEEKNVEIRLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685497|gb|AFS51189.1| phytochrome P, partial [Afrocarpus usambarensis]
          Length = 660

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/663 (70%), Positives = 537/663 (80%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+L VEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLTVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLF P S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFKPFSARALEKAAMAPDISLMNPICVHSQYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPLRTGDTAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W + VTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLEVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685655|gb|AFS51268.1| phytochrome P, partial [Pseudotsuga menziesii]
          Length = 656

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/660 (71%), Positives = 546/660 (82%), Gaps = 19/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +EMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAVEMLDLAPQSVPSMEQPQPEVLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASANSLEKAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P K+GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGYDRVM+Y 
Sbjct: 118 PLKTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDIGLLCDTVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV +IQS
Sbjct: 178 FHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKLIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGS+ASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSVASLVMAVIINGNDDEGGGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PIGIVTQSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+A ITSK+FLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAASLGDAVCGMASAIITSKEFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RSFPW+  EI+AIHSLQ+++R SFQ++++   +K   +++ N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSFPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAM  SL+ +
Sbjct: 537 LQGMDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMSMSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V EES   VE ++  AL GEE+KNVE+ LR F  QKQ   V+++VNAC+SRD+ +N+ G
Sbjct: 597 LVFEESVQRVEKMLNNALRGEEEKNVEMMLRTFGPQKQKEAVFLVVNACSSRDFTDNIVG 656


>gi|406685547|gb|AFS51214.1| phytochrome P, partial [Podocarpus archboldii]
          Length = 660

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/663 (70%), Positives = 538/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGY+RVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYERVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           S DSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 SADSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685477|gb|AFS51179.1| phytochrome P, partial [Araucaria muelleri]
          Length = 677

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/680 (68%), Positives = 542/680 (79%), Gaps = 38/680 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---------SRSEDFELN 132
           AYLS++QRGG IQPFGCMLAVEE TF II YSEN +EMLDL           R E    +
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFLIIAYSENAVEMLDLMPQSVPNMDMDRDEAMTSH 60

Query: 133 G-----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
           G      IG D RTLFT  S  +L KAA + EISL+NPI VHS  ++  KPFYAI+HRID
Sbjct: 61  GGGRVMTIGTDVRTLFTTSSARALEKAAMAHEISLMNPIWVHS--KNTNKPFYAIVHRID 118

Query: 188 VGIVIDLEPSKSG-----DPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
           VG+V+DLEP ++G     D ALS AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV
Sbjct: 119 VGMVMDLEPVRTGSGGGGDAALSAAGAVQSQKLAVRAISRLQSLPAGDIGLLCDTVVEDV 178

Query: 243 QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
           ++LTGYDRVM+Y FH+D+HGEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI
Sbjct: 179 RELTGYDRVMVYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMI 238

Query: 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-- 360
           CDC A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +   
Sbjct: 239 CDCRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEG 298

Query: 361 --------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQL 406
                         MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL
Sbjct: 299 GGGGGSGSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQL 358

Query: 407 AEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQL 466
            EK+ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGA LYYGG CW++GVTPTE+Q+
Sbjct: 359 TEKHILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGATLYYGGMCWMLGVTPTEAQI 418

Query: 467 KDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAK 526
           KDIA WLL  H D TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAK
Sbjct: 419 KDIADWLLEYHVDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAK 478

Query: 527 EVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQ 586
           E+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ
Sbjct: 479 EMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQ 538

Query: 587 EMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAK 646
           ++++ N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAK
Sbjct: 539 DIDDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAK 597

Query: 647 VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706
           VAELTGLP  EAMGKSL+ +++ EES   V+ ++  AL GEE+KNVE+KLR F  QKQ  
Sbjct: 598 VAELTGLPVGEAMGKSLVHDLIFEESANTVDKMLYHALRGEEEKNVEIKLRTFGPQKQKK 657

Query: 707 VVYILVNACTSRDYKNNVKG 726
            +Y++VNAC+SRDY +N+ G
Sbjct: 658 AIYLVVNACSSRDYTDNIVG 677


>gi|406685593|gb|AFS51237.1| phytochrome P, partial [Podocarpus ramosii]
          Length = 660

 Score =  961 bits (2485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/663 (70%), Positives = 538/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGY+RVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYERVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WG VVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGSVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685565|gb|AFS51223.1| phytochrome P, partial [Podocarpus drouynianus]
          Length = 660

 Score =  961 bits (2485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/663 (70%), Positives = 538/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           + FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 FKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLV CHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVGCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685577|gb|AFS51229.1| phytochrome P, partial [Podocarpus lucienii]
          Length = 660

 Score =  961 bits (2485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/663 (70%), Positives = 538/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV +I
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKMI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSK FLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKGFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685553|gb|AFS51217.1| phytochrome P, partial [Podocarpus brassii]
          Length = 660

 Score =  961 bits (2484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/663 (70%), Positives = 538/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGY+RVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYERVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+A YPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADASYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESVECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685531|gb|AFS51206.1| phytochrome P, partial [Nageia formosensis]
          Length = 660

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/663 (70%), Positives = 537/663 (80%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            +G D RTLFTP S  +L KAA + +ISL+NPI V+S      KPF AI+HRIDVG+VID
Sbjct: 61  TLGTDVRTLFTPSSARALEKAAMAPDISLMNPICVYSQYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPLRTGDTAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGSHYPATDIPQASRFLFMQNRVRMICDCSATPVTVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDI  WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIVEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSSPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKYQGIDELSSVATEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV E+S   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEDSAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685583|gb|AFS51232.1| phytochrome P, partial [Podocarpus neriifolius]
          Length = 660

 Score =  961 bits (2483), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/663 (70%), Positives = 538/663 (81%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++G  A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGY+RVM+
Sbjct: 119 LEPRRTGGAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYERVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685551|gb|AFS51216.1| phytochrome P, partial [Podocarpus bracteatus]
          Length = 660

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/663 (70%), Positives = 537/663 (80%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGY+RVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYERVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A P  VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPAKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +G TPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGATPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685619|gb|AFS51250.1| phytochrome P, partial [Retrophyllum minus]
          Length = 660

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/663 (70%), Positives = 536/663 (80%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG I PFGC+L VEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGXIXPFGCVLTVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPLRTGDTAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  I+TQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIMTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGA  LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGATTLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+S DY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSXDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685637|gb|AFS51259.1| phytochrome P, partial [Larix gmelinii]
          Length = 655

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/660 (71%), Positives = 547/660 (82%), Gaps = 20/660 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +EMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAVEMLDLAPQSVPSMEQPQPEFLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL K A ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASAHSLEKVAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P K+GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGY+RVM+Y 
Sbjct: 118 PLKTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDIGLLCDTVVENVRELTGYERVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGS+ASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSVASLVMAVIINGNDDEGGGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PF LRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFSLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PMGIVTQSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAASLGDAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K   +++ N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL+ +
Sbjct: 537 LQGMDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V EES   VE ++  AL GEE+KNVE+ LR F  QKQ + V+++VNAC+SRD+ +N+ G
Sbjct: 597 LVFEESVERVEKMLYNALRGEEEKNVEMMLRTFGPQKQEA-VFLVVNACSSRDFTDNIVG 655


>gi|406685639|gb|AFS51260.1| phytochrome P, partial [Larix kaempferi]
          Length = 655

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/660 (71%), Positives = 547/660 (82%), Gaps = 20/660 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +EMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAVEMLDLAPQSVPSMEQPQPEFLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASAHSLEKAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P K+GD  +S AGAVQSQKLAV AISRLQ+ P GDIGLLCDTVVE+V++LTGY+RVM+Y 
Sbjct: 118 PLKTGDAFMSAAGAVQSQKLAVRAISRLQSPPCGDIGLLCDTVVENVRELTGYERVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFTQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGS+ASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSVASLVMAVIINGNDDEGGGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+ILR Q LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRIQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PMGIVTQSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAASLGDAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K   +++ N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL+ +
Sbjct: 537 LQGMDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V EES   VE ++  AL GEE+KNVE+ LR F  QKQ + V+++VNAC+SRD+ +N+ G
Sbjct: 597 LVFEESVERVEKMLYNALRGEEEKNVEMMLRTFGPQKQEA-VFLVVNACSSRDFTDNIVG 655


>gi|406685493|gb|AFS51187.1| phytochrome P, partial [Afrocarpus gracilior]
          Length = 660

 Score =  960 bits (2481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/663 (70%), Positives = 536/663 (80%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+L VEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLTVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D R LF P S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRILFKPFSARALEKAAMAPDISLMNPICVHSQYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPLRTGDTAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W + VTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLEVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685633|gb|AFS51257.1| phytochrome P, partial [Cedrus libani]
          Length = 656

 Score =  960 bits (2481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/660 (71%), Positives = 546/660 (82%), Gaps = 19/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +EMLDL S+S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAVEMLDLVSQSVPSMEQPQSEVLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLF   S  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFIAASAHSLEKAAMAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P K+GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGYDRVM+Y 
Sbjct: 118 PLKTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDIGLLCDTVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCIAPPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGS+ASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSVASLVMAVIINGNDDEGGGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +H D TGLSTD
Sbjct: 358 PIGIVTQSPSIMDLVKCDGAALYYGGMCWMLGVTPTETQIKDIADWLLEHHCDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAASLGDAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++ + +K   + + N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSS-TKTMVHARLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMG SL+ +
Sbjct: 537 LQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGMSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V EES   V+ ++  A+ GEE+KNVE+ LR F  QKQ   V+++VNAC+SRD+ +N+ G
Sbjct: 597 LVLEESVERVDKMLDNAIRGEEEKNVEMMLRTFGPQKQKEAVFLVVNACSSRDFTDNIVG 656


>gi|406685519|gb|AFS51200.1| phytochrome P, partial [Lagarostrobos franklinii]
          Length = 643

 Score =  960 bits (2481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/646 (71%), Positives = 536/646 (82%), Gaps = 17/646 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG---LIGI 137
           AYLS++QRGG IQPF CMLAVEE  F+II YS+N LEMLD+  +S  + +L      IG 
Sbjct: 1   AYLSRMQRGGTIQPFSCMLAVEETNFKIIAYSQNALEMLDIMPQSVPNMDLGKSVLTIGT 60

Query: 138 DARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPS 197
           D RTLFTP S  +L KAA ++EISL+NPI VHS      KPFYAI+HRIDVG+VIDLEP 
Sbjct: 61  DVRTLFTPASARALEKAAMAQEISLMNPIWVHSQYTG--KPFYAIVHRIDVGMVIDLEPV 118

Query: 198 KSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFH 257
           ++GD A+S AGAVQSQKLAV AISRLQ+LP GDIGLLCD+VVEDV++LTGYDRVM+Y FH
Sbjct: 119 RTGDAAMSAAGAVQSQKLAVRAISRLQSLPAGDIGLLCDSVVEDVRELTGYDRVMVYKFH 178

Query: 258 DDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKE 317
           +D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS+E
Sbjct: 179 EDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVQVIQSEE 238

Query: 318 LKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKLWGLV 367
           L+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKLWGLV
Sbjct: 239 LRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGAGTSGRSSMKLWGLV 298

Query: 368 VCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAP 427
           VCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLRDAP
Sbjct: 299 VCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDAP 358

Query: 428 FSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDS 487
             IVTQSPSIMDLVKCDGAALYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDS
Sbjct: 359 IGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPAEAQIKDIADWLLEYHGDSTGLSTDS 418

Query: 488 LAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMH 547
           LA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MH
Sbjct: 419 LADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMH 478

Query: 548 PRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM 607
           PRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ N +K   + + N  K+
Sbjct: 479 PRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSN-TKTMVHARLNDLKL 537

Query: 608 QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
           QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL+ ++
Sbjct: 538 QGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSLVHDL 597

Query: 668 VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
           + EES  +VE ++ +AL GEE+KNVE+KLR F  QKQ  V+Y++VN
Sbjct: 598 ILEESAESVEKMLYKALRGEEEKNVEIKLRTFGPQKQKEVIYLVVN 643


>gi|406685665|gb|AFS51273.1| phytochrome P, partial [Tsuga heterophylla]
          Length = 656

 Score =  959 bits (2480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/660 (71%), Positives = 543/660 (82%), Gaps = 19/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +EMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAVEMLDLAPQSVPSMEQPQPEALTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASAHSLEKAAMAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P ++GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++L GYDRVM+Y 
Sbjct: 118 PLRTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDIGLLCDTVVENVRELAGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDDEAGGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG CW++GV PTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PIGIVTQSPSIMDLVKCDGAALYYGGMCWMLGVAPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+ARITSK+FLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAASLGDAVCGMASARITSKNFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK  S PW+  EI+AIHSLQ+++R SFQ++++   +K   + + N  +
Sbjct: 478 HPRSSFKAFLEVVKRGSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHARLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMG SL+ +
Sbjct: 537 LQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGMSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V EES   VE ++  AL GEE+KNVE+ LR F  QKQ   V+++VNAC+SRD+ +N+ G
Sbjct: 597 LVFEESVERVEKMLYNALRGEEEKNVEMMLRTFGPQKQKEAVFLVVNACSSRDFTDNIVG 656


>gi|406685527|gb|AFS51204.1| phytochrome P, partial [Microcachrys tetragona]
          Length = 657

 Score =  959 bits (2480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/660 (70%), Positives = 540/660 (81%), Gaps = 18/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNG-----LIG 136
           AYLS++QRGG IQPFGCMLAVEE  F+II +S+N LEMLDL  +S      G      IG
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETNFKIIAFSQNALEMLDLMPQSVPTMEVGKGAVLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEP 196
            D RTLFTP S  +L KAA + +ISL+NPI VHS  +   KPF AI+HRIDVGIVIDLEP
Sbjct: 61  TDVRTLFTPSSARALEKAAMAPDISLMNPIWVHS--QYTRKPFNAIVHRIDVGIVIDLEP 118

Query: 197 SKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNF 256
            ++GD A+S AGAVQSQKLAV AISR Q+LP GD+GLLCDTVVEDV++LTGYDRVM+Y F
Sbjct: 119 LRTGDAAMSTAGAVQSQKLAVRAISRPQSLPSGDVGLLCDTVVEDVRELTGYDRVMVYKF 178

Query: 257 HDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSK 316
           H+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMI DC A PV VIQS+
Sbjct: 179 HEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMIYDCTATPVNVIQSE 238

Query: 317 ELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKLWGL 366
           EL+QPLCLV STLR+PH CH QYM NMGSIASLVMAVIIN  D          SMKLWGL
Sbjct: 239 ELRQPLCLVGSTLRAPHRCHAQYMANMGSIASLVMAVIINGNDDEGGGTSGRSSMKLWGL 298

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A Q  EK+ILRTQ LLCDMLLRDA
Sbjct: 299 VVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQWTEKHILRTQTLLCDMLLRDA 358

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 359 PIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLQHHGDSTGLSTD 418

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA ARITS+DFLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 419 SLADAGYPGAASLGDAVCGMAAARITSRDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 478

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ + +K   + + N  K
Sbjct: 479 HPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSH-TKTMVHARLNDLK 537

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL+  
Sbjct: 538 LQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSLVHY 597

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V EES  +VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY +N+ G
Sbjct: 598 LVFEESAESVEKMLDRALRGEEEKNVEIKLRTFGSQKQKEAIYLVVNACSSRDYTDNIVG 657


>gi|406685571|gb|AFS51226.1| phytochrome P, partial [Podocarpus guatemalensis]
          Length = 660

 Score =  959 bits (2480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/663 (70%), Positives = 536/663 (80%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEML L  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLGLMPQSVPTMELGKHGGGEAL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+V+ 
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVGMVVG 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVNVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSR-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EE    VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEECAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685457|gb|AFS51169.1| phytochrome P, partial [Araucaria bernieri]
          Length = 675

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/678 (69%), Positives = 542/678 (79%), Gaps = 36/678 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---------SRSEDFELN 132
           AYLS++QRGG IQPFGCMLAVEE TF II YSEN +EMLDL           R E    +
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFLIIAYSENAVEMLDLMPQSVPNMDMDRDEAMTSH 60

Query: 133 G-----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
           G      IG D RTLFT  S  +L KAA + EISL+NPI VHS  ++  KPFYAI+HRID
Sbjct: 61  GGGRVMTIGTDVRTLFTTSSARALEKAAMAHEISLMNPIWVHS--KNTNKPFYAIVHRID 118

Query: 188 VGIVIDLEPSKSG-----DPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
           VG+V+DLEP ++G     D ALS AGAVQSQKLAV AIS LQ+LP GDIGLLCDTVVEDV
Sbjct: 119 VGMVMDLEPVRTGSGGGGDAALSAAGAVQSQKLAVRAISGLQSLPAGDIGLLCDTVVEDV 178

Query: 243 QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
           ++LTGYDRVM+Y FH+D+HGEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI
Sbjct: 179 RELTGYDRVMVYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMI 238

Query: 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-- 360
           CDC A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +   
Sbjct: 239 CDCRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEG 298

Query: 361 ------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                       MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 299 GGGGGSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTE 358

Query: 409 KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
           K+ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KD
Sbjct: 359 KHILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKD 418

Query: 469 IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
           IA WLL  H D TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+
Sbjct: 419 IADWLLEYHVDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEM 478

Query: 529 KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
           KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++
Sbjct: 479 KWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI 538

Query: 589 EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
           ++ N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVA
Sbjct: 539 DDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVA 597

Query: 649 ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
           ELTGLP  EAMGKSL+ +++ EES   ++ ++  AL GEE+KNVE+KLR F  QKQ   +
Sbjct: 598 ELTGLPVGEAMGKSLVHDLIFEESANTLDKMLYHALRGEEEKNVEIKLRTFGPQKQKKAI 657

Query: 709 YILVNACTSRDYKNNVKG 726
           Y++VNAC+SRDY +N+ G
Sbjct: 658 YLVVNACSSRDYTDNIVG 675


>gi|406685653|gb|AFS51267.1| phytochrome P, partial [Pseudolarix amabilis]
          Length = 656

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/660 (71%), Positives = 544/660 (82%), Gaps = 19/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +EMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEEITFRIIAYSENAVEMLDLAPQSVPSMEQPQPETLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL KAA ++EISLLNPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASAHSLEKAALAQEISLLNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P ++GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGYDRVM+Y 
Sbjct: 118 PLRTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDIGLLCDTVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM+NMGS+ASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMSNMGSVASLVMAVIINGNDDEAGGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG CW++GVTP E+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PIGIVTQSPSIMDLVKCDGAALYYGGMCWMLGVTPAEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAATLGDAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SF+++++   +K   + + N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFRDIDDSG-TKTMVHARLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VD +G +NGWNAKVAELTGLP  EAMG SL+ +
Sbjct: 537 LQGIDELSSVASEMVRLIETATAPILAVDPNGLVNGWNAKVAELTGLPVGEAMGMSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V EES   VE ++  AL GEE+KNVE+ LR F  QKQ   V+++VNAC+SRD  +N+ G
Sbjct: 597 LVFEESVERVEKMLYDALRGEEEKNVEMMLRTFGPQKQKEAVFLVVNACSSRDVTDNIVG 656


>gi|406685495|gb|AFS51188.1| phytochrome P, partial [Afrocarpus mannii]
          Length = 660

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/663 (70%), Positives = 536/663 (80%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+L VEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLTVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLF P S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFKPFSARALEKAAMAPDISLMNPICVHSQYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPLRTGDTAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W + VTPTE+Q++DIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLEVTPTEAQIRDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+ RDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSXRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685463|gb|AFS51172.1| phytochrome P, partial [Araucaria columnaris]
          Length = 677

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/680 (68%), Positives = 542/680 (79%), Gaps = 38/680 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---------SRSEDFELN 132
           AYLS++QRGG IQPFGCMLAVEE TF II YSEN +EMLDL           R E    +
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFLIIAYSENAVEMLDLMPQSVPNMDMDRDEAMTSH 60

Query: 133 G-----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
           G      IG D RTLFT  S  +L +AA + EISL+NPI VHS  ++  KPFYAI+HRID
Sbjct: 61  GGGRVMTIGTDVRTLFTTSSARALERAAMAHEISLMNPIWVHS--KNTNKPFYAIVHRID 118

Query: 188 VGIVIDLEPSKSG-----DPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
           VG+V+DLEP ++G     D ALS AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV
Sbjct: 119 VGMVMDLEPVRTGSGGGGDAALSAAGAVQSQKLAVRAISRLQSLPAGDIGLLCDTVVEDV 178

Query: 243 QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
           ++LTGYDRVM+Y FH+D+HGEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI
Sbjct: 179 RELTGYDRVMVYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMI 238

Query: 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-- 360
           CDC A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +   
Sbjct: 239 CDCRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEG 298

Query: 361 --------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQL 406
                         MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL
Sbjct: 299 GGGGGSGSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQL 358

Query: 407 AEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQL 466
            EK+ILRTQ LLCDMLLRDAP  IVT SPSIMD VKCDGAALYYGG CW++GVTPTE+Q+
Sbjct: 359 TEKHILRTQTLLCDMLLRDAPIGIVTHSPSIMDPVKCDGAALYYGGMCWMLGVTPTEAQI 418

Query: 467 KDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAK 526
           KDIA WLL  H D TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAK
Sbjct: 419 KDIADWLLEYHVDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAK 478

Query: 527 EVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQ 586
           E+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ
Sbjct: 479 EMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQ 538

Query: 587 EMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAK 646
           ++++ N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAK
Sbjct: 539 DIDDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAK 597

Query: 647 VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706
           VAELTGLP  EAMGKSL+ +++ EES   V+ ++  AL GEE+KNVE+KLR F  QKQ  
Sbjct: 598 VAELTGLPVGEAMGKSLVHDLIFEESANTVDKMLYHALRGEEEKNVEIKLRTFGPQKQKK 657

Query: 707 VVYILVNACTSRDYKNNVKG 726
            +Y++VNAC+SRDY +N+ G
Sbjct: 658 AIYLVVNACSSRDYTDNIVG 677


>gi|406685467|gb|AFS51174.1| phytochrome P, partial [Araucaria humboldtensis]
          Length = 677

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/680 (68%), Positives = 540/680 (79%), Gaps = 38/680 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---------SRSEDFELN 132
           AYLS++QRGG IQPFGCMLAVEE TF II YSEN +EMLDL           R E    +
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFLIIAYSENAVEMLDLMPQSVPNMDMDRDEAMTSH 60

Query: 133 G-----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
           G      IG D RTLFT  S  +L KAA + EISL+NPI VHS  ++  KPFYAI+HRID
Sbjct: 61  GGGRVMTIGTDVRTLFTTSSARALEKAAMAHEISLMNPIWVHS--KNTNKPFYAIVHRID 118

Query: 188 VGIVIDLEPSKSG-----DPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
           VG+V+DLEP ++G     D ALS AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV
Sbjct: 119 VGMVMDLEPVRTGSGGGGDAALSAAGAVQSQKLAVRAISRLQSLPAGDIGLLCDTVVEDV 178

Query: 243 QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
           ++LTGYDRVM+Y FH+D+HGEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI
Sbjct: 179 RELTGYDRVMVYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMI 238

Query: 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-- 360
           CDC A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +   
Sbjct: 239 CDCRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEG 298

Query: 361 --------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQL 406
                         MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL
Sbjct: 299 GGGGGSGSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQL 358

Query: 407 AEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQL 466
            EK+ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+
Sbjct: 359 TEKHILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQI 418

Query: 467 KDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAK 526
           KDIA WLL  H D TGL TDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAK
Sbjct: 419 KDIADWLLEYHVDSTGLGTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAK 478

Query: 527 EVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQ 586
           E+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ
Sbjct: 479 EMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQ 538

Query: 587 EMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAK 646
           ++++ N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAK
Sbjct: 539 DIDDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAK 597

Query: 647 VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706
           VAELTGLP  EAMGKSL+ +++ EES   V+ ++  AL GEE+KNVE+KLR F  QKQ  
Sbjct: 598 VAELTGLPVGEAMGKSLVHDLIFEESANTVDKMLYHALRGEEEKNVEIKLRTFGPQKQKK 657

Query: 707 VVYILVNACTSRDYKNNVKG 726
            +Y++VNAC SRDY  N+ G
Sbjct: 658 AIYLVVNACFSRDYTENIVG 677


>gi|406685453|gb|AFS51167.1| phytochrome P, partial [Araucaria angustifolia]
          Length = 675

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/678 (68%), Positives = 545/678 (80%), Gaps = 36/678 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---------EDFELN 132
           AYL+++QRGG IQPFGC LAVEE +F I+ YSEN +EMLDL  RS         E    +
Sbjct: 1   AYLTRMQRGGTIQPFGCTLAVEETSFLIVAYSENAVEMLDLSPRSVPNMDMDRDEAMGSH 60

Query: 133 G-----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
           G      IG D RTLFTP S  +L KAA ++EIS++NPI VHS  ++  KPFYAI+HRID
Sbjct: 61  GGGRVITIGTDVRTLFTPSSARALEKAAMAQEISMMNPIWVHS--KNTNKPFYAIVHRID 118

Query: 188 VGIVIDLEPSKSG-----DPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
           VG+VIDLEP ++G     D ALS AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV
Sbjct: 119 VGMVIDLEPVRTGSGGGGDAALSAAGAVQSQKLAVRAISRLQSLPTGDIGLLCDTVVEDV 178

Query: 243 QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
           ++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI
Sbjct: 179 RELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMI 238

Query: 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-- 360
           CDC A PV V+Q+ +LKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +   
Sbjct: 239 CDCRAAPVKVVQAGQLKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEEEG 298

Query: 361 ------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                       MKLWGLVVCHHTS R +PFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 299 GGGGGSGSGRGSMKLWGLVVCHHTSSRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTE 358

Query: 409 KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
           K+ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KD
Sbjct: 359 KHILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKD 418

Query: 469 IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
           IA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMATARITSKDFLFWFRSHTAKE+
Sbjct: 419 IADWLLEYHGDSTGLSTDSLADAGYPGAASLGDAVCGMATARITSKDFLFWFRSHTAKEM 478

Query: 529 KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
           KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++
Sbjct: 479 KWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI 538

Query: 589 EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
           ++ N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVA
Sbjct: 539 DDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVA 597

Query: 649 ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
           ELTGLP  EAMGKSL+ +++ +ES   V+ ++  AL GEE+KNVE+KLR F  QKQ   +
Sbjct: 598 ELTGLPVGEAMGKSLVHDLIFDESANTVDKMLYHALRGEEEKNVEIKLRTFGPQKQKKAI 657

Query: 709 YILVNACTSRDYKNNVKG 726
           Y++VNAC+SRDY +N+ G
Sbjct: 658 YLVVNACSSRDYTDNIVG 675


>gi|406685667|gb|AFS51274.1| phytochrome P, partial [Tsuga sieboldii]
          Length = 656

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/660 (71%), Positives = 544/660 (82%), Gaps = 19/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +EMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAVEMLDLAPQSVPSMEQPQPEALTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL +AA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID+E
Sbjct: 61  TDVRTLFTAASAHSLERAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDIE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P ++GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGYDRVM+Y 
Sbjct: 118 PLRTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDIGLLCDTVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGS+ASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSVASLVMAVIINGNDDEAGGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYA EFL+QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYAREFLMQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PIGIVTQSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+A ITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAASLGDAVCGMASAIITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++ +   +K   + + N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDINDSG-TKTMVHARLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMG SL+ +
Sbjct: 537 LQGIDELSSVASEMVRLIETATAPIXAVDSNGLVNGWNAKVAELTGLPVGEAMGMSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V EES   VE ++  AL GEE+KNVE+ LR F  QKQ   V+++VNAC+SRD+ +N+ G
Sbjct: 597 LVFEESVERVEKMLYNALRGEEEKNVEMMLRTFGPQKQKEAVFLVVNACSSRDFTDNIVG 656


>gi|108711122|gb|ABF98917.1| Phytochrome C, putative, expressed [Oryza sativa Japonica Group]
          Length = 957

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/920 (51%), Positives = 622/920 (67%), Gaps = 63/920 (6%)

Query: 23  KSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSV-ISPPEGVPEEQIT 81
           +SS A+ K       ++     DA L AEFE    S + F+YS SV  +   G     ++
Sbjct: 14  RSSSARSK---HSARVVAQTPMDAQLHAEFE---GSQRHFDYSSSVGAANRSGATTSNVS 67

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLIGID 138
           AYL  +QRG  +QPFGC+LAV   TF ++ YSEN  EMLDL   +    D      +G D
Sbjct: 68  AYLQNMQRGRFVQPFGCLLAVHPETFALLAYSENAAEMLDLTPHAVPTIDQREALAVGTD 127

Query: 139 ARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSK 198
            RTLF   S  +L KAA   +++LLNPILVH+  R+  KPFYAI+HRIDVG+VIDLEP  
Sbjct: 128 VRTLFRSHSFVALQKAATFGDVNLLNPILVHA--RTSGKPFYAIMHRIDVGLVIDLEPVN 185

Query: 199 SGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHD 258
             D  ++  GA++S KLA  AI+RLQ+LP G++ LLCD +V +V +LTGYDRVM Y FH+
Sbjct: 186 PVDLPVTATGAIKSYKLAARAIARLQSLPSGNLSLLCDVLVREVSELTGYDRVMAYKFHE 245

Query: 259 DDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKEL 318
           D+HGEV++E +RSDLEPYLG+H+PA DIPQA+RFLF +N+VRMICDC A PV +IQ   L
Sbjct: 246 DEHGEVIAECKRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATPVKIIQDDSL 305

Query: 319 KQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSM-------------KLWG 365
            QP+ +  STLR+PHGCH QYM +MGS+ASLVM+V IN  +               KLWG
Sbjct: 306 TQPISICGSTLRAPHGCHAQYMASMGSVASLVMSVTINEDEDDDGDTGSDQQPKGRKLWG 365

Query: 366 LVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRD 425
           L+VCHHTSPR++PFPLRYACEFL+Q F +Q+  E+++A Q  E++ILRTQ LLCDMLLRD
Sbjct: 366 LMVCHHTSPRFVPFPLRYACEFLLQVFGIQINKEVELAAQAKERHILRTQTLLCDMLLRD 425

Query: 426 APFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLST 485
           AP  I TQSP++MDLVKCDGAALYY  + W++G TP+E+++K+I  WL   H   TGLST
Sbjct: 426 APVGIFTQSPNVMDLVKCDGAALYYQNQLWVLGSTPSEAEIKNIVAWLQEYHDGSTGLST 485

Query: 486 DSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGG 544
           DSL EAGYPGAA LG  VCGMA  +I+SKDF+FWFRSHTAKE+KWGGAKH P +  DNG 
Sbjct: 486 DSLVEAGYPGAAALGDVVCGMAAIKISSKDFIFWFRSHTAKEIKWGGAKHEPIDADDNGR 545

Query: 545 KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME---EENDSKVQGNTQ 601
           KMHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R S Q+ +     N   +     
Sbjct: 546 KMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANKNNNAKSIVTAPS 605

Query: 602 QNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGK 661
            +  K+QG+ EL +V  EMVRLIETATAPI  VD +G+INGWN K AELTGLP  EA+GK
Sbjct: 606 DDMKKIQGLLELRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPVMEAIGK 665

Query: 662 SLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYK 721
            L+D V+ ++S   V+ ++  AL G E++N+++KL+ F  Q+ +  V ++VNAC SRD  
Sbjct: 666 PLVDLVI-DDSVEVVKQILNSALQGIEEQNLQIKLKTFNHQENNGPVILMVNACCSRDLS 724

Query: 722 NNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAM 781
             V GVCFV QD+T + ++MDK+ R+QGDY AI+++ + LIPPIF  ++   C EWN AM
Sbjct: 725 EKVVGVCFVAQDMTGQNIIMDKYTRIQGDYVAIVKNPSELIPPIFMINDLGSCLEWNEAM 784

Query: 782 EKVTGWMRHEVIG---------------------------------ITGQGTENFPFGFF 808
           +K+TG  R + +                                  I+GQ  E   FGFF
Sbjct: 785 QKITGIKREDAVDKLLIGEVFTHHEYGCRVKDHGTLTKLSILMNTVISGQDPEKLLFGFF 844

Query: 809 NRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAY 868
           N  G+++E  +TA++RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL Y
Sbjct: 845 NTDGKYIESLMTATKRTDAEGKITGALCFLHVASPELQHALQVQKMSEQAAMNSFKELTY 904

Query: 869 IRQEVKNPLNGIRFVHKLLE 888
           IRQE++NPLNG+  +  +L+
Sbjct: 905 IRQELRNPLNGMLELEAMLQ 924


>gi|406685535|gb|AFS51208.1| phytochrome P, partial [Nageia wallichiana]
          Length = 660

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/663 (70%), Positives = 537/663 (80%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEEANFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            +G D RTLFTP S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+VID
Sbjct: 61  TLGTDVRTLFTPSSARALEKAAMAPDISLMNPICVHSQYS--RKPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPLRTGDTAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVTVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STL +PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLGAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSI DLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSITDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRS+TAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSNTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKYQGIDELSSVATEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV E+S   VE ++ RAL GEE+KNVE++LR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEDSAECVEKMLYRALRGEEEKNVEIRLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685587|gb|AFS51234.1| phytochrome P, partial [Podocarpus oleifolius]
          Length = 660

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/663 (70%), Positives = 537/663 (80%), Gaps = 21/663 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFL  QNRVRMICDC A PV +I
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLSMQNRVRMICDCSATPVKMI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGDDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +M PRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMRPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VNAC+SRDY  N
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVNACSSRDYTEN 657

Query: 724 VKG 726
           + G
Sbjct: 658 IVG 660


>gi|406685481|gb|AFS51181.1| phytochrome P, partial [Araucaria schmidii]
          Length = 677

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/680 (68%), Positives = 541/680 (79%), Gaps = 38/680 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---------SRSEDFELN 132
           AYLS++QRGG IQPFGCMLAVEE TF II YSEN +EMLDL           R E    +
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFLIIAYSENAVEMLDLMPQSVPNMDMDRDEAMTSH 60

Query: 133 G-----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
           G      IG D RTLFT  S  +L KAA + EISL+NPI VHS  ++  KPFYAI+HRID
Sbjct: 61  GGGRVMTIGTDVRTLFTTSSARALEKAAMAHEISLMNPIWVHS--KNTNKPFYAIVHRID 118

Query: 188 VGIVIDLEPSKSG-----DPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
           VG+V+DLEP ++G     D ALS AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV
Sbjct: 119 VGMVMDLEPVRTGSGGGGDAALSAAGAVQSQKLAVRAISRLQSLPAGDIGLLCDTVVEDV 178

Query: 243 QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
           ++LTGYDRVM+Y FH+D+HGEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI
Sbjct: 179 RELTGYDRVMVYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMI 238

Query: 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-- 360
           CDC A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +   
Sbjct: 239 CDCRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEG 298

Query: 361 --------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQL 406
                         MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL
Sbjct: 299 GGGGGSGSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQL 358

Query: 407 AEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQL 466
            EK+ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+
Sbjct: 359 TEKHILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQI 418

Query: 467 KDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAK 526
           KDIA WLL  H D TGLSTDSLA+AGYP AA LG AVCGMA ARITSKDFLFWFRSHTAK
Sbjct: 419 KDIADWLLEYHVDSTGLSTDSLADAGYPSAASLGDAVCGMAAARITSKDFLFWFRSHTAK 478

Query: 527 EVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQ 586
           E+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ
Sbjct: 479 EMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQ 538

Query: 587 EMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAK 646
           ++++ N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAK
Sbjct: 539 DIDDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAK 597

Query: 647 VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706
           VAELTGLP  EAMGKSL+ +++ EES   ++ ++  AL GEE+KNVE+ LR F  QKQ  
Sbjct: 598 VAELTGLPVGEAMGKSLVHDLIFEESANTLDKMLYHALRGEEEKNVEINLRTFGPQKQKK 657

Query: 707 VVYILVNACTSRDYKNNVKG 726
            +Y++VNAC+SRDY +N+ G
Sbjct: 658 AIYLVVNACSSRDYTDNIVG 677


>gi|406685659|gb|AFS51270.1| phytochrome P, partial [Tsuga caroliniana]
          Length = 656

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/660 (70%), Positives = 541/660 (81%), Gaps = 19/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +EMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAVEMLDLAPQSVPSMEQPQPEALTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL +AA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASAHSLERAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P ++GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGYDRVM+Y 
Sbjct: 118 PLRTGDAFMSAAGAVQSQKLAVRAISRLQSLPCGDIGLLCDTVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGS+ASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSVASLVMAVIINGNDDEAGGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +HGD TGLST 
Sbjct: 358 PIGIVTQSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTG 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+A ITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G KM
Sbjct: 418 SLADAGYPGAASLGDAVCGMASAIITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRKM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K     + N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVRARLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DE SSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMG SL+ +
Sbjct: 537 LQGIDERSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGMSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V EES   VE ++  AL G+E+KNVE+ LR F  QKQ   V+++VNAC+SRD+  N+ G
Sbjct: 597 LVFEESVERVEKMLYNALRGQEEKNVEMMLRTFGPQKQKEAVFLVVNACSSRDFTENIVG 656


>gi|406685621|gb|AFS51251.1| phytochrome P, partial [Saxegothaea conspicua]
          Length = 661

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/664 (69%), Positives = 539/664 (81%), Gaps = 22/664 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGCMLAVEE  FRII YSEN LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETNFRIIAYSENALEMLDLMPQSVPTMELGRHGGGAVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLF P S  ++ KAA + +I+L+NPI VHS      KPFYAI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFIPSSARAIEKAAMAPDINLMNPIWVHSQYTG--KPFYAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD ++S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPVRTGDASMSTAGAVQSQKLAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+P+ DIPQA+RFLF QNRVRMICDC   PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPSTDIPQASRFLFMQNRVRMICDCSTTPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-----------SMK 362
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASL MAVIIN  D           +MK
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEEGGGTTSGRSTMK 298

Query: 363 LWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDML 422
           LWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL ME+Q+A QL EK+IL TQ LLCDML
Sbjct: 299 LWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMEVQLAAQLTEKHILWTQTLLCDML 358

Query: 423 LRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTG 482
           LRDAP  IV+QSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TG
Sbjct: 359 LRDAPIGIVSQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTG 418

Query: 483 LSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDN 542
           LSTDSLA+AGYPGAA LG AVCGMA ARITS+DFLFWFRSHTAKE+KWGGAKHHP+ KD+
Sbjct: 419 LSTDSLADAGYPGAASLGDAVCGMAAARITSRDFLFWFRSHTAKEMKWGGAKHHPDDKDD 478

Query: 543 GGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQ 602
           G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   +T+ 
Sbjct: 479 GRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHTRL 537

Query: 603 NGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKS 662
           N  K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWN KVAELTGLP  EAMGKS
Sbjct: 538 NDLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNVKVAELTGLPVGEAMGKS 597

Query: 663 LIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKN 722
           L+ ++V +ES  +VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++ NAC+S DY +
Sbjct: 598 LVHDLVFQESAESVEKMLYRALRGEEEKNVEIKLRTFGPQKQKEAIYLVANACSSLDYTD 657

Query: 723 NVKG 726
           N+ G
Sbjct: 658 NIVG 661


>gi|327342186|gb|AEA50880.1| phyA [Populus tremula]
          Length = 958

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/943 (50%), Positives = 635/943 (67%), Gaps = 61/943 (6%)

Query: 38  IIDHYNADAGLLAEFEQSVASGKSFNYSRSVIS-----PPEGVPEEQITAYLSKIQRGGL 92
           II     DA L A+FE+S +S    +  R   S     PP    ++  TAYL  IQ+G L
Sbjct: 22  IIAQTTVDAKLHADFEESGSSFDYSSSVRVTDSVGGDQPPRS--DKVTTAYLHHIQKGKL 79

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGC+LA++E TFR++ YSEN  E+L + S +     +  + G IG D RT+FT PS 
Sbjct: 80  IQPFGCLLALDEKTFRVVAYSENAPELLTMVSHAVPSVGEHPVLG-IGTDIRTIFTAPSA 138

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
           ++L KA    ++SLLNPILVH  +    KPFYAI+HR+   ++ID EP K  +  ++ AG
Sbjct: 139 SALQKAMGFGDVSLLNPILVHCKTSG--KPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAG 196

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           A+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDR M Y FHDDDHGEVVSE+
Sbjct: 197 ALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRAMAYKFHDDDHGEVVSEV 256

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
            +  +EPYLG+H+PA DIPQA+RFLF +N+VRMI DCHA  V V+Q ++L   L L  ST
Sbjct: 257 TKPGMEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGST 316

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPR 375
           LR+PH CHLQYM NM SIASLVMAV++N  D               +LWGLVVCH+TSPR
Sbjct: 317 LRAPHSCHLQYMENMNSIASLVMAVVVNDGDEDGDTPDSANPQKRKRLWGLVVCHNTSPR 376

Query: 376 YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
           ++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLCDML+RDAP  IVTQSP
Sbjct: 377 FVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSP 436

Query: 436 SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
           +IMDLVKCDGA L+Y  + W +G+TP++ QL+DIA+WL   H D TGLSTDSL +AGYPG
Sbjct: 437 NIMDLVKCDGAVLFYRNKIWRLGITPSDLQLQDIAFWLSEYHMDSTGLSTDSLYDAGYPG 496

Query: 496 AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
           A  LG  VCGMA  RITSKD LFWFRS TA E++WGGAKH P  KD+G +MHPRSSFKAF
Sbjct: 497 ALALGDVVCGMAAVRITSKDMLFWFRSQTAAEIRWGGAKHEPGEKDDGRRMHPRSSFKAF 556

Query: 556 LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
           LEVVK RS PW+  E++AIHSLQ+++R++F+++E  +      + + +  K++G+ EL +
Sbjct: 557 LEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDIETMDVDTKTIHARLSDLKIEGMQELEA 616

Query: 616 VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
           V  EMVRLIETAT PI  VD  G +NGWN K++ELTGL   +A+GK L+  +V + S   
Sbjct: 617 VTSEMVRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAIGKHLL-TLVEDSSVDI 675

Query: 676 VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
           V+ ++  AL G+E++N++ +++    + +   + ++VNAC SRD   NV GVCFVGQDIT
Sbjct: 676 VKRMLFLALQGKEEQNIQFEIKTHGSKSECGPICLVVNACASRDLHENVVGVCFVGQDIT 735

Query: 736 HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
            +K++MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN AM  +TGW R EV+  
Sbjct: 736 GQKMVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCSEWNPAMTNLTGWKREEVLDK 795

Query: 794 -------------------------------GITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                           +TGQ +E   FGFF R G++VE  L  S
Sbjct: 796 MLLGEVFGLNMACCRLKNQEAFVNLGVVLNTAMTGQESEKVSFGFFARTGKYVECLLCVS 855

Query: 823 RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
           ++ D EG V G FCF+Q+   +LQ AL  Q L +     ++K LAY+++++ NPL+GI F
Sbjct: 856 KKLDREGAVTGVFCFLQLASQELQQALHVQRLSEQTALKRLKALAYLKKQIWNPLSGIIF 915

Query: 883 VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEG 925
             K++E + +   Q++ L TS  C+ Q+  I+D  DL  I EG
Sbjct: 916 SGKMMEGTELGAEQKELLHTSAQCQCQLSKILDDSDLDSIIEG 958


>gi|357117591|ref|XP_003560548.1| PREDICTED: phytochrome A type 3-like [Brachypodium distachyon]
          Length = 1131

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1109 (44%), Positives = 698/1109 (62%), Gaps = 67/1109 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ-----ITAYLSKIQRGGL 92
            I+     DA L AE+E++   G SFNYS+ V +     PE+Q     + AYL  IQ+G +
Sbjct: 24   ILAQTTLDAELNAEYEET---GDSFNYSKLVEAQRNTPPEQQGRSEKVIAYLQHIQKGKM 80

Query: 93   IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGA 149
            IQ FGC+LA++E +F +I +S+N  EML + S    S D      IG + R+LFT     
Sbjct: 81   IQSFGCLLALDEKSFNVIAFSQNAPEMLTMVSHAVPSVDDPPRLGIGTNVRSLFTDQGAT 140

Query: 150  SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
            +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP K  +   + AGA
Sbjct: 141  ALHKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVKPTEFPATAAGA 198

Query: 210  VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
            +QS KLA  AIS++Q+LPGG + +LC+TVV++V  LTGYDRVM Y FH+DDHGEV +EI 
Sbjct: 199  LQSYKLAAKAISKIQSLPGGSMEVLCNTVVKEVFDLTGYDRVMAYKFHEDDHGEVFAEIT 258

Query: 270  RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
            +  LEPYLG+H+PA DIPQAARFLF +N+VRMICDC A  + +++ + L   + L  S L
Sbjct: 259  KPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKIVEDESLPFDISLCGSAL 318

Query: 330  RSPHGCHLQYMTNMGSIASLVMAVII---------------NSKDSMKLWGLVVCHHTSP 374
            R+PH CHLQYM NM SIASLVMAV++                 +   KLWGL+VCHH SP
Sbjct: 319  RAPHSCHLQYMENMNSIASLVMAVVVNENEEDDEVEAEQPAQQQKKKKLWGLLVCHHESP 378

Query: 375  RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVTQ 433
            RY+PFPLRYACEFL Q F++ +  E ++  QL EK+ILR Q +L DML R+A P +I++ 
Sbjct: 379  RYVPFPLRYACEFLAQVFAVHVNKEFELENQLREKSILRMQTILSDMLFREASPLTIISG 438

Query: 434  SPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGY 493
            +P++MDLVKCDGAAL +G + W +   PTESQ++DIA WL   H D TGLST+SL +AGY
Sbjct: 439  TPNVMDLVKCDGAALLHGDKVWRLRDAPTESQIRDIASWLSEVHRDSTGLSTESLHDAGY 498

Query: 494  PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
            PGA+ LG  +CGMA A+I S+D LFWFRSHTA E+KWGGAKH P   D+G +MHPR SFK
Sbjct: 499  PGASALGDMICGMAVAKINSRDILFWFRSHTAAEIKWGGAKHDPSDMDDGRRMHPRLSFK 558

Query: 554  AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
            AFLEVVK +S  W   E++AIHSLQ+++R +  +  +        N Q    K+ G+ EL
Sbjct: 559  AFLEVVKMKSLSWSDYEMDAIHSLQLILRGALNDGIKATKGASLDN-QIGDLKLDGLAEL 617

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
             +V  EMVRL+ETAT PI  VD +G INGWN K AELTGL   +A+G+ ++  +V E S 
Sbjct: 618  QAVTSEMVRLMETATVPILAVDGNGLINGWNQKAAELTGLRVDDAIGRHIL-TLVEESSV 676

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733
              V+ ++  AL G+E+K V  +++    +++   V ++VNAC SRD  ++V GVCFV QD
Sbjct: 677  PVVQRMLYLALQGKEEKEVRFEVKTHGPKREDGPVILVVNACASRDLHDHVVGVCFVAQD 736

Query: 734  ITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI 793
            +T  K++MDKF R++GDY+AII + NPLIPPIF +DE   CSEWN AM  +TGW R EV+
Sbjct: 737  MTVHKLVMDKFTRIEGDYKAIIHNPNPLIPPIFGTDEFGWCSEWNTAMTMLTGWHRDEVV 796

Query: 794  ---------------------------------GITGQGTENFPFGFFNRQGQFVEVALT 820
                                              + G+ T+  PFGFF+R G+++E  L+
Sbjct: 797  DKMLLGEVFDSSSASCLLKNKDAFISLCVLINSALAGEETDKAPFGFFDRNGKYIECLLS 856

Query: 821  ASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGI 880
            A+R+ +A G + G FCF+Q+   +LQ AL  Q   +     K+K  +Y+R  + NPL+G+
Sbjct: 857  ANRKENAGGLITGVFCFIQVASHELQHALHVQQASEQTSLRKLKAFSYMRHAINNPLSGM 916

Query: 881  RFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFLLGN 938
             +  K L+++ ++E Q + +  +D C  Q+  I+  +D   I E +  ++L+  EF+L +
Sbjct: 917  LYSRKALKNTDLNEEQMKQIHVADNCHHQLNKILADLDQDNITEKSSCLDLEMVEFVLQD 976

Query: 939  ILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDG 998
            ++ A VSQV++  + K + +  ++PE     S+ GD IRLQ +LSDFL   V+ +P   G
Sbjct: 977  VVVAAVSQVLIACQGKGIRVSCNLPERFMKQSVYGDGIRLQQILSDFLFVSVKFSPV-GG 1035

Query: 999  WVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSR 1058
             VEI      K I D    + ++ R+ H G G+P+ L+  M+   N   + EG  L +SR
Sbjct: 1036 SVEISSKLTKKSIGDNLHLIDLELRIKHQGLGVPAELMAQMFEEDNTQQSEEGQSLLVSR 1095

Query: 1059 KLLIMMNGRVRYVRENSKCYFVIDLELKT 1087
             LL +MNG V ++RE     F++ +EL +
Sbjct: 1096 NLLRLMNGDVHHLREAGVSTFILTMELAS 1124


>gi|406685651|gb|AFS51266.1| phytochrome P, partial [Pinus elliottii]
          Length = 656

 Score =  955 bits (2469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/660 (70%), Positives = 543/660 (82%), Gaps = 19/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +EMLDL  +S    E  + + L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAVEMLDLAPQSVPSMEQPQQDVLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VIDLE
Sbjct: 61  TDVRTLFTAASAHSLEKAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDLE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P ++GD  +S AGAVQSQKLAV AISRLQ+LPGGD+GLLCDTVVE+V++LTGYDRVM+Y 
Sbjct: 118 PLRTGDAFMSAAGAVQSQKLAVRAISRLQSLPGGDVGLLCDTVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDEEGGGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QA  LQL MELQ+A QL EK+IL+TQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFLMQALGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P   VTQSPSI DLVKCDGAALYYGG CW+ GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PMGTVTQSPSIRDLVKCDGAALYYGGMCWMXGVTPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+ARITSKDF FWFRSHTAKE+KWGGAKHHP+ KD+  +M
Sbjct: 418 SLADAGYPGAASLGDAVCGMASARITSKDFPFWFRSHTAKEMKWGGAKHHPDDKDDARRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K   +++ N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMG SL+ +
Sbjct: 537 LQGMDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGMSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           +V EES   VE ++  AL GEE+KNVE+ L+ F  QK+   V ++VNAC+SRD+ +N+ G
Sbjct: 597 LVFEESVERVEKMLHNALRGEEEKNVEMMLKTFGPQKEKEAVILVVNACSSRDFTDNIVG 656


>gi|406685631|gb|AFS51256.1| phytochrome P, partial [Abies lasiocarpa]
          Length = 656

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/660 (70%), Positives = 541/660 (81%), Gaps = 19/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TFRII YSEN LEMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENALEMLDLAPQSVLSMEQPQQEVLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL KAA + EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASANSLEKAAVAHEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P ++GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGYDRVM+Y 
Sbjct: 118 PLRTGDAFMSAAGAVQSQKLAVRAISRLQSLPSGDIGLLCDTVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRS+LEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSNLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D         S+KLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMGNMGSIASLVMAVIINGNDDEAGGTGRNSLKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAAL+YGG CW++GVTPTE+Q+KDIA WLL +HGD  GLSTD
Sbjct: 358 PIGIVTQSPSIMDLVKCDGAALHYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSAGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+ARITSK+FLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAASLGDAVCGMASARITSKEFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKA LEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K   +++ N  +
Sbjct: 478 HPRSSFKALLEVVKRRSSPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMG SL+ +
Sbjct: 537 LQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGMSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
            + EES   VE ++  AL GEE+ NVE+ LR F  QKQ   V+++VNAC+SRD+  N+ G
Sbjct: 597 PLFEESVERVEKMLYNALRGEEENNVEMMLRTFGPQKQKEAVFLVVNACSSRDFTENIVG 656


>gi|406685287|gb|AFS51084.1| phytochrome P, partial [Taxus cuspidata]
          Length = 670

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/674 (68%), Positives = 544/674 (80%), Gaps = 33/674 (4%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---SRSEDF------ELN 132
           AYLS++QRGG++QPFGCMLAVEE +F+II YSEN LEML++    S+S+        E  
Sbjct: 1   AYLSRMQRGGILQPFGCMLAVEESSFKIIAYSENALEMLNITPAPSQSQSVPNMVGGESE 60

Query: 133 GL--IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
           G+  IG D R LFTP S  +L +AA ++EISL NPI+V SNS    KPFYAI+HRIDVGI
Sbjct: 61  GIETIGSDIRRLFTPSSVRNLERAAMAQEISLTNPIVVDSNS---GKPFYAIVHRIDVGI 117

Query: 191 VIDLEPSKSGDPALSLA----GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLT 246
           VIDLEP + GD A  ++    G+V SQ+LAV A SRLQA+P GDIGLLCDTVVE+V++LT
Sbjct: 118 VIDLEPVRRGDAAALVSWGGGGSVPSQRLAVRATSRLQAVPSGDIGLLCDTVVEEVRELT 177

Query: 247 GYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCH 306
           GYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC 
Sbjct: 178 GYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCR 237

Query: 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS--------- 357
           A PV VIQS ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N          
Sbjct: 238 ATPVKVIQSGELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIVNGNGNGNDEDG 297

Query: 358 -----KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNIL 412
                + SMKLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL E NIL
Sbjct: 298 GGGSGRSSMKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQLIENNIL 357

Query: 413 RTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWW 472
           RTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG CWL+GVTP E+Q+KDIA W
Sbjct: 358 RTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMCWLLGVTPMEAQIKDIAEW 417

Query: 473 LLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGG 532
           LL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGG
Sbjct: 418 LLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGG 477

Query: 533 AKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEN 592
           AKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++
Sbjct: 478 AKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI-DDS 536

Query: 593 DSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTG 652
           D+K   + + N  K+QG+DELSSVA EMVRLIETATAPI  VDSSG +NGWNAKV ELTG
Sbjct: 537 DTKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSSGIVNGWNAKVGELTG 596

Query: 653 LPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILV 712
           LP  EAMGKSL+ ++V +ES   VE ++  A+ GEE+KNVE+KLR F  QKQ  V+Y++V
Sbjct: 597 LPVGEAMGKSLVHDLVFDESVETVEKMLYHAMRGEEEKNVEIKLRTFGPQKQKKVIYLVV 656

Query: 713 NACTSRDYKNNVKG 726
           NAC+SRDY +N+ G
Sbjct: 657 NACSSRDYTDNIVG 670


>gi|406685557|gb|AFS51219.1| phytochrome P, partial [Podocarpus coriaceus]
          Length = 647

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/650 (70%), Positives = 528/650 (81%), Gaps = 21/650 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEAL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFTP S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+V+D
Sbjct: 61  TIGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVGMVVD 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVNVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSR-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
           + +VV EE    VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VN
Sbjct: 598 VHDVVLEECAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVN 647


>gi|371940268|dbj|BAL45571.1| truncate phytochrome A2 protein [Glycine max]
          Length = 979

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/933 (49%), Positives = 631/933 (67%), Gaps = 58/933 (6%)

Query: 43  NADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ----ITAYLSKIQRGGLIQPFGC 98
             DA L A FE+S +S    +  R +    +GV + +     TAYL  +Q+G +IQPFGC
Sbjct: 27  TVDAKLHATFEESGSSFDYSSSVR-ISGTADGVNQPRHDKVTTAYLHHMQKGKMIQPFGC 85

Query: 99  MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           +LA++E T ++I YSEN  EML + S +     D    G IG D +TLFT PS ++L KA
Sbjct: 86  LLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALG-IGTDIKTLFTAPSASALQKA 144

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
               E+ LLNP+L+H  +    KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS K
Sbjct: 145 LGFAEVLLLNPVLIHCKTSG--KPFYAIIHRVTGSMIIDFEPVKPYEVPMTAAGALQSYK 202

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FH+DDHGEV++EI +  LE
Sbjct: 203 LAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLE 262

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF +N+VRMI DCHA  V V+Q ++L   L L  STLR+PH 
Sbjct: 263 PYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVRVLQDEKLPFDLTLCGSTLRAPHS 322

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDS------------MKLWGLVVCHHTSPRYIPFPLR 382
           CH QYM NM SIASLVMAV++N  +              +LWGLVVCH+T+PR++PFPLR
Sbjct: 323 CHAQYMANMDSIASLVMAVVVNDNEEDGDTDAIQPQKRKRLWGLVVCHNTTPRFVPFPLR 382

Query: 383 YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
           YACEFL Q F++ +  E+++  Q+ EKNILRTQ LLCD+++RDAP  IV++SP+IMDLVK
Sbjct: 383 YACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDLVMRDAPLGIVSESPNIMDLVK 442

Query: 443 CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
           CDGAAL Y  + W +GVTP+ESQ+++IA+WL   H D TG STDSL++AG+P A  LG  
Sbjct: 443 CDGAALIYKNKVWRLGVTPSESQIREIAFWLSEYHMDSTGFSTDSLSDAGFPSALSLGDV 502

Query: 503 VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
           VCGMA  R+T+KD +FWFRSHTA E++WGGAKH    KD+G +MHPRSSFK FL+VVK R
Sbjct: 503 VCGMAAVRVTAKDVVFWFRSHTAAEIRWGGAKHEAGEKDDGRRMHPRSSFKVFLDVVKAR 562

Query: 563 SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVR 622
           S PW+  EI+A+HSLQ+++R++F++ E  + +    NT+ +  K++G+ EL +V  E+VR
Sbjct: 563 SLPWKEYEIDAMHSLQLILRNAFKDTESMDLNTKAINTRLSDLKIEGMQELEAVTSEIVR 622

Query: 623 LIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICR 682
           LIETAT PI  VD  G +NGWN K+AELTGLP  EAMGK L+  +V + S   V+ ++  
Sbjct: 623 LIETATVPILAVDVDGLVNGWNIKIAELTGLPVGEAMGKHLL-TLVEDSSTDRVKKMLNL 681

Query: 683 ALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742
           ALLGEE+KNV+ +++    +     + ++VNAC SRD ++NV GVCFV  DIT +K +MD
Sbjct: 682 ALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMD 741

Query: 743 KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI--------- 793
           KF R++GDY+AI+Q+ NPLIPPIF +DE   C EWN AM K+TGW R EV+         
Sbjct: 742 KFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGELF 801

Query: 794 ------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEG 829
                                    +TG  TE  PFGFF R G++VE  L+ S++ D EG
Sbjct: 802 GTHMAACRLKNQEAFVNLGVVLNKAMTGLETEKVPFGFFARNGKYVECLLSVSKKLDVEG 861

Query: 830 KVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLES 889
            V G FCF+Q+  P+LQ AL  Q L +     ++  L+Y++++++NPL GI F  K+LE 
Sbjct: 862 LVTGVFCFLQLASPELQQALHIQRLSEQTALKRLNALSYMKRQIRNPLCGIIFSRKMLEG 921

Query: 890 SSISENQRQYLETSDACERQIMTIIDGMDLRCI 922
           +++   Q+Q L TS  C++Q+  I+D  DL  I
Sbjct: 922 TALGTEQKQLLRTSAQCQQQLSKILDDSDLDSI 954


>gi|406685291|gb|AFS51086.1| phytochrome P, partial [Taxus globosa]
          Length = 670

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/674 (68%), Positives = 544/674 (80%), Gaps = 33/674 (4%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---SRSEDF------ELN 132
           AYLS++QRGG++QPFGCMLAVEE +F+II YSEN LEML++    S+S+        E  
Sbjct: 1   AYLSRMQRGGILQPFGCMLAVEESSFKIIAYSENALEMLNITPPPSQSQSVPNMVGGESE 60

Query: 133 GL--IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
           G+  IG D R LFTP S  +L +AA ++EISL NPI+V SNS    KPFYAI+HRIDVGI
Sbjct: 61  GIETIGSDIRRLFTPSSVRNLERAAMAQEISLTNPIVVDSNS---GKPFYAIVHRIDVGI 117

Query: 191 VIDLEPSKSGDPALSLA----GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLT 246
           VIDLEP + GD A  ++    G+V SQ+LAV A SRLQA+P GDIGLLCDTVVE+V++LT
Sbjct: 118 VIDLEPVRRGDAAALVSWGGGGSVPSQRLAVRATSRLQAVPSGDIGLLCDTVVEEVRELT 177

Query: 247 GYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCH 306
           GYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC 
Sbjct: 178 GYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCR 237

Query: 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS--------- 357
           A PV VIQS ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N          
Sbjct: 238 ATPVKVIQSGELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIVNGNGNGNDEDG 297

Query: 358 -----KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNIL 412
                + SMKLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL E NIL
Sbjct: 298 GGGSGRSSMKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQLIENNIL 357

Query: 413 RTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWW 472
           RTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG CWL+GVTP E+Q+KDIA W
Sbjct: 358 RTQTLLCDMLLRDAPMGIVTQSPSIMDLVKCDGAALYYGGMCWLLGVTPMEAQIKDIAEW 417

Query: 473 LLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGG 532
           LL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGG
Sbjct: 418 LLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGG 477

Query: 533 AKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEN 592
           AKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++
Sbjct: 478 AKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI-DDS 536

Query: 593 DSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTG 652
           D+K   + + N  K+QG+DELSSVA EMVRLIETATAPI  VDSSG +NGWNAKV ELTG
Sbjct: 537 DTKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSSGIVNGWNAKVGELTG 596

Query: 653 LPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILV 712
           LP  EAMGKSL+ ++V +ES   VE ++  A+ GEE+KNVE+KLR F  QKQ  V+Y++V
Sbjct: 597 LPVGEAMGKSLVHDLVFDESVETVEKMLYHAMRGEEEKNVEIKLRTFGPQKQKKVIYLVV 656

Query: 713 NACTSRDYKNNVKG 726
           NAC+SRDY +N+ G
Sbjct: 657 NACSSRDYTDNIVG 670


>gi|327241204|gb|AEA40446.1| phytochrome A type 3 [Triticum aestivum]
          Length = 1130

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1108 (45%), Positives = 694/1108 (62%), Gaps = 68/1108 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVIS---PPEGVPE---EQITAYLSKIQRGG 91
            ++     DA L AEFE+S     SF+YS+ V +    P  + E   E++ AYL  IQRG 
Sbjct: 22   VLAQTTLDAQLNAEFEES---SDSFDYSKLVEAQRDTPTVLQEGRSEKVIAYLQHIQRGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSG 148
            +IQ FGC+LA++E +F +I +SEN  EML   S    S D      IG + R+LFT    
Sbjct: 79   MIQSFGCLLALDEKSFNVIAFSENAPEMLTTVSHAVPSVDDPPRLDIGTNVRSLFTDQGA 138

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
             +L KA    ++SLLNPILV   S    KPFYAI+HR    +V+D EP    +   + AG
Sbjct: 139  TALHKALGFADVSLLNPILVQCKSSG--KPFYAIVHRATGCLVVDFEPVNPTEFPATAAG 196

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AIS++QALPGG + LLC+TVV++V +LTGYDRVM Y FH+D+HGEV +EI
Sbjct: 197  ALQSYKLAAKAISKIQALPGGSMELLCNTVVKEVFELTGYDRVMAYKFHEDNHGEVFAEI 256

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             +  LEPYLG+H+PA DIPQAARFLF +N+VRMICD  A  + VI+ + L   + L  S 
Sbjct: 257  TKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDVRARSIKVIEDEALPFDISLCGSA 316

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMK---------------LWGLVVCHHTS 373
            LR+ H CHLQYM NM SIASLVMAV++N  +                  LWGLVVCHH S
Sbjct: 317  LRAAHSCHLQYMENMNSIASLVMAVVVNENEEDDEVGSEQPAQQQKKKILWGLVVCHHES 376

Query: 374  PRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVT 432
            PRY+PFPLRYACEFL Q F++ +  E +V  QL EK+ILR Q +L DML ++A P +IV+
Sbjct: 377  PRYVPFPLRYACEFLAQVFAVHVNKEFEVQKQLREKSILRMQTILSDMLFKEASPLTIVS 436

Query: 433  QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
             +P+IMDL+KCDGAAL YGG+ W +G  PTESQ++D+A WL   H D TGLST+SL +AG
Sbjct: 437  GAPNIMDLIKCDGAALLYGGKVWRLGNAPTESQIRDLALWLSEVHMDSTGLSTESLHDAG 496

Query: 493  YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
            YPGA+ LG  VCGMA A+I S D LFWFRSHTAKE++WGGAK+ P  +D+  +MHPR SF
Sbjct: 497  YPGASALGDMVCGMAVAKINSNDILFWFRSHTAKEIRWGGAKNDPSDQDDSRRMHPRLSF 556

Query: 553  KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612
            KAFLEVVK +S  W  SE++AIHSLQ+++R +   + +    K   + Q    K+ G+ E
Sbjct: 557  KAFLEVVKMKSLAWTDSEMDAIHSLQLILRGTVDGVVKPT-GKASLDEQIGDLKLDGLAE 615

Query: 613  LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
            L +V  EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V E S
Sbjct: 616  LQTVTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEESS 674

Query: 673  QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQ 732
               V+ ++  AL G+E+K V  +++    ++    V ++VNAC SRD  ++V GVCFV Q
Sbjct: 675  VSVVQRMLYLALQGKEEKEVRFEVKTHGPKRDDGPVILVVNACASRDLHDDVVGVCFVAQ 734

Query: 733  DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV 792
            D+T  K++MDKF R++GDY+AII + NPLIPPIF +DE   C EWNAAM K+TGW + EV
Sbjct: 735  DMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADEFGWCCEWNAAMTKLTGWHKEEV 794

Query: 793  I---------------------------------GITGQGTENFPFGFFNRQGQFVEVAL 819
            +                                  + G+ TE  PFGFF+R G++ E  L
Sbjct: 795  LDKMLLGEVFDSRNASCLLKNKDAFVSLCAVINSALAGKETEKAPFGFFDRSGKYTECLL 854

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            + +RR + +G + G FCF+ I   +LQ AL+ Q   +     ++K  +Y+R  + NPL+G
Sbjct: 855  SVNRRQNEDGLITGVFCFIHIPSHELQQALQVQQASEQASLKRLKAFSYMRHAINNPLSG 914

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFLLG 937
            + +  K L+++ ++E Q + +  SD C  Q+  I+  +D   I E +  ++L+  EF+L 
Sbjct: 915  MLYSRKALKNTDLNEEQMRQIHVSDNCHHQLNKILADLDQDGIMEKSSCLDLEMAEFVLQ 974

Query: 938  NILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPD 997
            +++ A VSQV++    K + +  ++PE      + GD +RLQ +LSDFL   V+ +P   
Sbjct: 975  DVVVAAVSQVLIACEGKGIRVSCNLPERFMKKLIYGDGVRLQQILSDFLSISVKFSPV-G 1033

Query: 998  GWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLS 1057
            G +EI        I +    + +  R+ H G G+P+ L+  M+   +   + EGLGL +S
Sbjct: 1034 GSIEISAKATKNSIGENLHLIDLDLRIKHHGLGVPAELMAQMFEEDDMQQSEEGLGLLVS 1093

Query: 1058 RKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            R LL +MNG VR++RE     F++  EL
Sbjct: 1094 RNLLRLMNGDVRHLREAGMSIFILTAEL 1121


>gi|406685459|gb|AFS51170.1| phytochrome P, partial [Araucaria bidwillii]
          Length = 662

 Score =  944 bits (2441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/665 (69%), Positives = 534/665 (80%), Gaps = 36/665 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---------SRSEDFELN 132
           AYL+++QRGG IQPFGCMLAVEE +F+I+ YSEN +EMLDL           R E    +
Sbjct: 1   AYLTRMQRGGTIQPFGCMLAVEETSFQIVAYSENAVEMLDLSPQSVPNMDMDRDEAMGSH 60

Query: 133 G-----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
           G      IG D R LFTP S  +L KAA ++EIS++NPI VHS  ++  KPFYAI+HRID
Sbjct: 61  GGGRVITIGTDVRNLFTPSSARALEKAAMAQEISMMNPIWVHS--KNTNKPFYAIVHRID 118

Query: 188 VGIVIDLEPSKSG-----DPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
           VG+VIDLEP ++G     D ALS AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV
Sbjct: 119 VGMVIDLEPVRTGSGGGGDAALSAAGAVQSQKLAVRAISRLQSLPTGDIGLLCDTVVEDV 178

Query: 243 QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
           ++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI
Sbjct: 179 RELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMI 238

Query: 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-- 360
           CDC A PV V+Q+ ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +   
Sbjct: 239 CDCRAAPVKVVQAGELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEG 298

Query: 361 ------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                       MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 299 GGGGGSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTE 358

Query: 409 KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
           K+ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KD
Sbjct: 359 KHILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKD 418

Query: 469 IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
           IA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMATARITSKDFLFWFRSHTAKE+
Sbjct: 419 IADWLLEYHGDSTGLSTDSLADAGYPGAASLGDAVCGMATARITSKDFLFWFRSHTAKEM 478

Query: 529 KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
           KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++
Sbjct: 479 KWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI 538

Query: 589 EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
           ++ N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVA
Sbjct: 539 DDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVA 597

Query: 649 ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
           ELTGLP  EAMGKSL  +++ +ES   V+ ++  AL GEE+KNVE+KLR F  QKQ   +
Sbjct: 598 ELTGLPVGEAMGKSLAHDLIFDESANTVDKMLYHALRGEEEKNVEIKLRTFGPQKQKKAI 657

Query: 709 YILVN 713
           Y++VN
Sbjct: 658 YLVVN 662


>gi|406685259|gb|AFS51070.1| phytochrome P, partial [Sciadopitys verticillata]
          Length = 642

 Score =  944 bits (2441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/644 (71%), Positives = 530/644 (82%), Gaps = 19/644 (2%)

Query: 97  GCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNG----LIGIDARTLFTPPSGA 149
           GCMLAVEE +F II YSEN +EMLDL        + E+ G     IG DAR+LF+P S  
Sbjct: 1   GCMLAVEESSFNIIAYSENAVEMLDLMPHYVPVNNMEMEGGGVLRIGTDARSLFSPSSAR 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSG-DPALSLAG 208
           ++ KAA ++EISL+NPI +H       KPFYAILHRIDVG+VID EP ++G D +LS AG
Sbjct: 61  AMEKAAMAQEISLMNPIWMHCKKSG--KPFYAILHRIDVGLVIDFEPVRTGGDASLSAAG 118

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            VQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVVSEI
Sbjct: 119 GVQSQKLAVRAISRLQSLPAGDIGLLCDTVVEDVRELTGYDRVMVYKFHEDEHGEVVSEI 178

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV V+Q++ELKQPLCLV ST
Sbjct: 179 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCCATPVKVVQAEELKQPLCLVGST 238

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFP 380
           LR+PHGCH QYM NMGSIASLVMAVIIN  D        SMKLWGLVVCHHTSPR +PFP
Sbjct: 239 LRAPHGCHAQYMANMGSIASLVMAVIINGNDEEGASGRSSMKLWGLVVCHHTSPRAVPFP 298

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDL
Sbjct: 299 LRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDL 358

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 359 VKCDGAALYYGGMFWLLGVTPTEAQIKDIAHWLLEYHGDSTGLSTDSLADAGYPGAASLG 418

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 419 DAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 478

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+QG+DELSSVA EM
Sbjct: 479 RRSLPWENVEMDAIHSLQLILRGSFQDI-DDSDTKTMVHARLNDLKLQGIDELSSVASEM 537

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VRLIETATAPI  VDSSG INGWNAKVAELTGLP  EAMGKSL+ ++V EES  A E ++
Sbjct: 538 VRLIETATAPILAVDSSGLINGWNAKVAELTGLPVREAMGKSLVHDLVFEESAEAAEKML 597

Query: 681 CRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNV 724
             AL GEE+KNVE+KLR F  Q+Q   +Y++VNAC+SRDY +++
Sbjct: 598 YHALRGEEEKNVEIKLRTFGPQRQKKAIYLVVNACSSRDYTDSI 641


>gi|406685627|gb|AFS51254.1| phytochrome P, partial [Abies firma]
          Length = 656

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/660 (70%), Positives = 537/660 (81%), Gaps = 19/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG +QPFGC+LAVEE TFRII YSEN LEMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRVQPFGCVLAVEETTFRIIAYSENALEMLDLAPQSVPSMEQPQQEVLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL KAA + EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASANSLEKAAVAHEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P + GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGYDRVM+Y 
Sbjct: 118 PLRIGDAFMSAAGAVQSQKLAVRAISRLQSLPSGDIGLLCDTVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HG     IRRS+LEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGGSCRGIRRSNLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D         S+KLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMGNMGSIASLVMAVIINGNDDEAGGTGRNSLKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAAL+YGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PIGIVTQSPSIMDLVKCDGAALHYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYP AA LG AVCGMA+ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPSAASLGDAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K   +++ N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMG SL+ +
Sbjct: 537 LQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGMSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           ++ EES   VE ++  AL GEE+ NVE+ LR F  QKQ   V+++VNAC+SRD+  N+ G
Sbjct: 597 LLFEESVERVEKMLYNALRGEEENNVEMMLRTFGPQKQKEAVFLVVNACSSRDFTENIVG 656


>gi|406685465|gb|AFS51173.1| phytochrome P, partial [Araucaria cunninghamii]
          Length = 664

 Score =  944 bits (2440), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/667 (69%), Positives = 532/667 (79%), Gaps = 38/667 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---------SRSEDFELN 132
           AYLS++QRGG IQPFGCMLAVEE TF II YSEN +EMLDL           R +    +
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFLIIAYSENAVEMLDLMPQSVPNMDMDRDQAMTSH 60

Query: 133 G-----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
           G      IG D RTLFTP S   L KAA + EISL+NPI VHS  ++  KPFYAI+HRID
Sbjct: 61  GGGRVMTIGTDVRTLFTPSSARLLEKAAMAHEISLMNPIWVHS--KNTNKPFYAIVHRID 118

Query: 188 VGIVIDLEPSKSG-----DPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
           VG+VIDLEP ++G     D ALS AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV
Sbjct: 119 VGMVIDLEPVRTGSGGGGDAALSAAGAVQSQKLAVRAISRLQSLPAGDIGLLCDTVVEDV 178

Query: 243 QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
           ++LTGYDRVM+Y FH+D+HGEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI
Sbjct: 179 RELTGYDRVMVYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMI 238

Query: 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-- 360
           CDC A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +   
Sbjct: 239 CDCRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEG 298

Query: 361 --------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQL 406
                         MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL
Sbjct: 299 GGGGGSGSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQL 358

Query: 407 AEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQL 466
            EK+ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+
Sbjct: 359 TEKHILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQI 418

Query: 467 KDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAK 526
           KDIA WLL  H D TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAK
Sbjct: 419 KDIADWLLEYHVDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAK 478

Query: 527 EVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQ 586
           E+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ
Sbjct: 479 EMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQ 538

Query: 587 EMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAK 646
           ++++ N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAK
Sbjct: 539 DIDDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAK 597

Query: 647 VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706
           VAELTGLP  EAMGKSL+ +++ EES   V+ ++  AL GEE+KNVE+KLR F  QKQ  
Sbjct: 598 VAELTGLPVGEAMGKSLVHDLIFEESANTVDKMLYHALRGEEEKNVEIKLRTFGPQKQKK 657

Query: 707 VVYILVN 713
            +Y++VN
Sbjct: 658 AIYLVVN 664


>gi|406685629|gb|AFS51255.1| phytochrome P, partial [Abies homolepis]
          Length = 656

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/660 (70%), Positives = 538/660 (81%), Gaps = 19/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG +QPFGC+LAVEE TFRII YSEN LEMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRVQPFGCVLAVEETTFRIIAYSENALEMLDLAPQSVPSMEQPQQEVLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL KAA + EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASANSLEKAAVAHEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P + GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGYDRVM+Y 
Sbjct: 118 PLRIGDAFMSAAGAVQSQKLAVRAISRLQSLPSGDIGLLCDTVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRS+LEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSNLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D         S+KLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMGNMGSIASLVMAVIINGNDDEAGGTGRNSLKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAAL+YGG CW++GVTPT++Q+K IA WLL +HGD TGLSTD
Sbjct: 358 PIGIVTQSPSIMDLVKCDGAALHYGGMCWMLGVTPTKAQIKGIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYP AA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ K +G +M
Sbjct: 418 SLADAGYPSAASLGDAVCGMAPARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKGDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSS KAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K   +++ N  +
Sbjct: 478 HPRSSLKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMG SL+ +
Sbjct: 537 LQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGMSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           ++ EES   VE ++  AL GEE+ NVE+ LR F  QKQ   V+++VNAC+SRD+  N+ G
Sbjct: 597 LLFEESVERVEKMLYNALRGEEENNVEMMLRTFGPQKQKEAVFLVVNACSSRDFTENIVG 656


>gi|406685473|gb|AFS51177.1| phytochrome P, partial [Araucaria luxurians]
          Length = 679

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/682 (67%), Positives = 537/682 (78%), Gaps = 40/682 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---------SRSEDFELN 132
           AYLS++QRGG IQPFGCMLAVEE TF II YSEN +EMLDL           R E    +
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFLIIAYSENAVEMLDLMPQSVPNMDMDRDEAMTSH 60

Query: 133 G-----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
           G      IG D RTLFT  S  +L +AA + EISL+NPI VHS  ++  KPFYAI+HRID
Sbjct: 61  GGGRVMTIGTDVRTLFTTSSARALERAAMAHEISLMNPIWVHS--KNTNKPFYAIVHRID 118

Query: 188 VGIVIDLEPSKSGDPALSLAGA-------VQSQKLAVSAISRLQALPGGDIGLLCDTVVE 240
           VG+V+DLEP ++G        A       VQSQKLAV AISRLQ+LP GDIGLLCDTVVE
Sbjct: 119 VGMVMDLEPVRTGSGGGGGGDAALSAAGAVQSQKLAVRAISRLQSLPAGDIGLLCDTVVE 178

Query: 241 DVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVR 300
           DV++LTGYDRVM+Y FH+D+HGEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVR
Sbjct: 179 DVRELTGYDRVMVYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVR 238

Query: 301 MICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS 360
           MICDC A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  + 
Sbjct: 239 MICDCRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNED 298

Query: 361 ----------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAM 404
                           MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A 
Sbjct: 299 EGGGGGGSGSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAA 358

Query: 405 QLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTES 464
           QL EK+ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+
Sbjct: 359 QLTEKHILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEA 418

Query: 465 QLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHT 524
           Q+KDIA WLL  H D TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHT
Sbjct: 419 QIKDIADWLLEYHVDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHT 478

Query: 525 AKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDS 584
           AKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R S
Sbjct: 479 AKEMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGS 538

Query: 585 FQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWN 644
           FQ++++ N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWN
Sbjct: 539 FQDIDDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWN 597

Query: 645 AKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQ 704
           AKVAELTGLP  EAMGKSL+ +++ EES   V+ ++  AL GEE+KNVE+KLR F  QKQ
Sbjct: 598 AKVAELTGLPVGEAMGKSLVHDLIFEESANTVDKMLYHALRGEEEKNVEIKLRTFGPQKQ 657

Query: 705 HSVVYILVNACTSRDYKNNVKG 726
              +Y++VNAC+SRDY +N+ G
Sbjct: 658 KKAIYLVVNACSSRDYTDNIVG 679


>gi|406685283|gb|AFS51082.1| phytochrome P, partial [Taxus brevifolia]
          Length = 672

 Score =  943 bits (2437), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/679 (68%), Positives = 540/679 (79%), Gaps = 41/679 (6%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR----------------SR 125
           AYLS++QRGG++QPFGCMLAVEE +F+II YSEN LEML++                   
Sbjct: 1   AYLSRMQRGGILQPFGCMLAVEESSFKIIAYSENALEMLNITPPPSQSQSQSVPNMVGGE 60

Query: 126 SEDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHR 185
           SE  E    IG D R LFTP S  +L +AA ++EISL NPI+V S+S    KPFYAI+HR
Sbjct: 61  SEGIET---IGSDIRRLFTPSSVRNLERAAMAQEISLTNPIVVDSSS---GKPFYAIVHR 114

Query: 186 IDVGIVIDLEPSKSGDPALSLA----GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           IDVGIVIDLEP + GD A  ++    G+V SQ+LAV A SRLQA+P GDIGLLCDTVVE+
Sbjct: 115 IDVGIVIDLEPVRRGDAAALVSWGGGGSVPSQRLAVRATSRLQAVPSGDIGLLCDTVVEE 174

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRM
Sbjct: 175 VRELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRM 234

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           ICDC A PV VIQS ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N     
Sbjct: 235 ICDCRATPVKVIQSGELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIVNGNGNG 294

Query: 358 ----------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLA 407
                     + SMKLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL 
Sbjct: 295 NDEDGGGGSGRSSMKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQLI 354

Query: 408 EKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLK 467
           E NILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG CWL+GVTP E+Q+K
Sbjct: 355 ENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMCWLLGVTPMEAQIK 414

Query: 468 DIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKE 527
           DIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE
Sbjct: 415 DIAEWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKE 474

Query: 528 VKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQE 587
           +KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ+
Sbjct: 475 MKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQD 534

Query: 588 MEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
           + +++D+K   + + N  K+QG+DELSSVA EMVRLIETATAPI  VDSSG +NGWNAKV
Sbjct: 535 I-DDSDTKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSSGIVNGWNAKV 593

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
            ELTGLP  EAMGKSL+ ++V +ES   VE ++  A+ GEE+KNVE+KLR F  QKQ  V
Sbjct: 594 GELTGLPVGEAMGKSLVHDLVFDESVETVEKMLYHAMRGEEEKNVEIKLRTFGPQKQKKV 653

Query: 708 VYILVNACTSRDYKNNVKG 726
           +Y++VNAC+SRDY +N+ G
Sbjct: 654 IYLVVNACSSRDYTDNIVG 672


>gi|406685289|gb|AFS51085.1| phytochrome P, partial [Taxus floridana]
          Length = 670

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/674 (68%), Positives = 542/674 (80%), Gaps = 33/674 (4%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---SRSEDF------ELN 132
           AYLS++QRGG++QPFGCMLAVEE +F+II YSEN LEML++    S+S+        E  
Sbjct: 1   AYLSRMQRGGILQPFGCMLAVEESSFKIIAYSENALEMLNITPPPSQSQSVPNMVGGESE 60

Query: 133 GL--IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
           G+  IG D R LFTP S  +L +AA ++EISL NPI+V SNS    KPFYAI+HRIDVGI
Sbjct: 61  GIETIGSDIRRLFTPSSVRNLERAAMAQEISLTNPIVVDSNS---GKPFYAIVHRIDVGI 117

Query: 191 VIDLEPSKSGDPALSLA----GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLT 246
            IDLEP + GD A  ++    G+V SQ+LAV A SRLQA+P GDIGLLCDTVVE+V++LT
Sbjct: 118 AIDLEPVRRGDAAALVSWGGGGSVPSQRLAVRATSRLQAVPSGDIGLLCDTVVEEVRELT 177

Query: 247 GYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCH 306
           GYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC 
Sbjct: 178 GYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCR 237

Query: 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS--------- 357
           A PV VIQ  ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N          
Sbjct: 238 ATPVKVIQPGELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIVNGNGNGNDEDG 297

Query: 358 -----KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNIL 412
                + SMKLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL E NIL
Sbjct: 298 GGGSGRSSMKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQLIENNIL 357

Query: 413 RTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWW 472
           RTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG CWL+GVTP E+Q+KDIA W
Sbjct: 358 RTQTLLCDMLLRDAPMGIVTQSPSIMDLVKCDGAALYYGGMCWLLGVTPMEAQIKDIAEW 417

Query: 473 LLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGG 532
           LL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGG
Sbjct: 418 LLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGG 477

Query: 533 AKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEN 592
           AKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++
Sbjct: 478 AKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI-DDS 536

Query: 593 DSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTG 652
           D+K   + + N  K+QG+DELSSVA EMVRLIETATAPI  VDSSG +NGWNAKV ELTG
Sbjct: 537 DTKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSSGIVNGWNAKVGELTG 596

Query: 653 LPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILV 712
           LP  EAMGKSL+ ++V +ES   VE ++  A+ GEE+KNVE+KLR F  QKQ  V+Y++V
Sbjct: 597 LPVGEAMGKSLVHDLVFDESVETVEKMLYHAMRGEEEKNVEIKLRTFGPQKQKKVIYLVV 656

Query: 713 NACTSRDYKNNVKG 726
           NAC+SRDY +N+ G
Sbjct: 657 NACSSRDYTDNIVG 670


>gi|57281883|emb|CAC85512.1| phytochrome A [Triticum aestivum]
          Length = 1130

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1108 (44%), Positives = 692/1108 (62%), Gaps = 68/1108 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVIS---PPEGVPE---EQITAYLSKIQRGG 91
            ++     DA L AEFE+S     SF+YS+ V +    P  + E   E++ AYL  IQRG 
Sbjct: 22   VLAQTTLDAELNAEFEES---SDSFDYSKLVEAQRDTPTVLQEGRSEKVIAYLQHIQRGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSG 148
            +IQ FGC+LA++E +F +I +SEN  EML   S    S D      IG + R+LFT    
Sbjct: 79   MIQSFGCLLALDEKSFNVIAFSENAPEMLTTVSHAVPSVDDPPRLDIGTNVRSLFTDQGA 138

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            A+L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP    +   + AG
Sbjct: 139  AALHKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVNPTEFPATAAG 196

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AIS++QALPGG + LLC+TVV++V  LTGYDRVM Y FH+D+HGEV +EI
Sbjct: 197  ALQSYKLAAKAISKIQALPGGSMELLCNTVVKEVFDLTGYDRVMAYKFHEDNHGEVFAEI 256

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             +  LEPYLG+H+PA DIPQAARFLF +N+VR+ICD  A P+ VI+ + L   + L  S 
Sbjct: 257  TKPGLEPYLGLHYPATDIPQAARFLFMKNKVRLICDVRARPIKVIEDEALPFDISLCGSA 316

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMK---------------LWGLVVCHHTS 373
            LR+ H CHLQYM NM SIASLVMAV++N  +                  LWGL+VCHH S
Sbjct: 317  LRAAHSCHLQYMENMNSIASLVMAVVVNENEEDDEVGSEQPAQQQKKKILWGLIVCHHES 376

Query: 374  PRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVT 432
            PRY+PFPLRYACEFL Q F++ +  E +V  QL EK+ILR Q +L DML ++A P +IV+
Sbjct: 377  PRYVPFPLRYACEFLAQVFAVHVNKEFEVQKQLREKSILRMQTILSDMLFKEASPLTIVS 436

Query: 433  QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
             +P+IMDL+KCDGAAL YGG+ W +G  PTESQ++D+A WL   H D TGLST+SL +AG
Sbjct: 437  GAPNIMDLIKCDGAALLYGGKVWRLGTAPTESQIRDLALWLSEVHMDSTGLSTESLHDAG 496

Query: 493  YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
            YPGA+ LG  VCGMA A+I S D LFWFRS TAKE++WGGAK+ P   D+  +MHPR SF
Sbjct: 497  YPGASALGDTVCGMAVAKINSSDILFWFRSPTAKEIRWGGAKNDPSDMDDSRRMHPRLSF 556

Query: 553  KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612
            KAFLEVVK +S  W  SE++AIHSLQ+++R +   + +    K   + Q    K+ G+ E
Sbjct: 557  KAFLEVVKMKSLAWTDSEMDAIHSLQLILRGAVDGVVKPT-GKASLDEQIGDLKLDGLAE 615

Query: 613  LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
            L +V  EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V E S
Sbjct: 616  LQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEESS 674

Query: 673  QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQ 732
               V+ ++  AL G+E+K V  +++    ++    V ++VNAC SRD  ++V GVCFV Q
Sbjct: 675  VSVVQRMLYLALQGKEEKEVRFEVKTHGPKRDDGPVILVVNACASRDLHDDVVGVCFVAQ 734

Query: 733  DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV 792
            D+T  K++MDKF R++GDY AII + NPLIPPIF +DE+  C EWNAAM K+TGW R EV
Sbjct: 735  DMTVHKLVMDKFTRVEGDYMAIIHNPNPLIPPIFGADESGWCCEWNAAMTKLTGWHREEV 794

Query: 793  I---------------------------------GITGQGTENFPFGFFNRQGQFVEVAL 819
            +                                  + G+ TE  PFGFF+R G++ E  L
Sbjct: 795  LDKMLLGEVFDSRNASCLLKNKDAFVSLCVVINSALAGEETEKAPFGFFDRSGKYTECLL 854

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            + +RR +  G + G FCF+ I   +LQ AL+ Q   +     ++K  +Y+R  + NPL+G
Sbjct: 855  SVNRRQNEGGLITGVFCFIHIPSHELQQALQVQQASEQKSLKRLKAFSYMRHAINNPLSG 914

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFLLG 937
            + +  K L+++ ++E Q + +  +D C  Q+  I+  +D   I E +  ++L+  EF+L 
Sbjct: 915  MLYSRKALKNTDLNEEQMRQIHVADNCHHQLNKILADLDQHNIMEKSSCLDLEMAEFVLQ 974

Query: 938  NILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPD 997
            +++ A VSQV++  + K + +  ++PE      + GD +RLQ +LSDFL   V+ +P   
Sbjct: 975  DVVVAAVSQVLIACQGKGIRVSCNLPERFMKQLVYGDGVRLQQILSDFLSISVKFSPVGS 1034

Query: 998  GWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLS 1057
              VEI        I +    + ++ R+ H G G+P+ L+  M+       + EGLGL +S
Sbjct: 1035 S-VEISAKATKNSIGENLHLIDLELRIKHQGLGVPAELMAQMFEEDEPQQSEEGLGLLVS 1093

Query: 1058 RKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            R LL +MNG VR++RE     F++  EL
Sbjct: 1094 RNLLRLMNGDVRHLREAGVSIFILTAEL 1121


>gi|406685491|gb|AFS51186.1| phytochrome P, partial [Afrocarpus falcatus]
          Length = 647

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/650 (70%), Positives = 527/650 (81%), Gaps = 21/650 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+L VEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLTVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLF P S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFKPFSALALEKAAMAPDISLMNPICVHSQYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPLRTGDTAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W + VTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLEVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + + N
Sbjct: 479 RRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLN 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
           + +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VN
Sbjct: 598 VHDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVN 647


>gi|406685625|gb|AFS51253.1| phytochrome P, partial [Abies concolor]
          Length = 656

 Score =  941 bits (2432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/660 (70%), Positives = 537/660 (81%), Gaps = 19/660 (2%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG +QPFGC+ AVEE TFRII YSEN LEMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRVQPFGCVPAVEETTFRIIAYSENALEMLDLAPQSVPSMEQPQQEVLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL KAA + EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASANSLEKAAVAHEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P + GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGYDRVM+Y 
Sbjct: 118 PLRIGDAFMSAAGAVQSQKLAVRAISRLQSLPSGDIGLLCDTVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRS+LEPYLG+H+PA DIPQA+RF F QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSNLEPYLGLHYPATDIPQASRFSFMQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D         S+KLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMGNMGSIASLVMAVIINGNDDEAGGTGRNSLKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAAL+YGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PIGIVTQSPSIMDLVKCDGAALHYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYP AA LG AVCGMA+ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPSAASLGDAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K   +++ N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NG   KVAELTGLP  EAMG SL+ +
Sbjct: 537 LQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGMECKVAELTGLPVGEAMGMSLVQD 596

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           ++ EES   VE ++  AL GEE+ NVE+ LR F  QKQ   V+++VNAC+SRD+  N+ G
Sbjct: 597 LLFEESVERVEKMLYNALRGEEENNVEMMLRTFGPQKQKEAVFLVVNACSSRDFTENIVG 656


>gi|406685485|gb|AFS51183.1| phytochrome P, partial [Wollemia nobilis]
          Length = 677

 Score =  941 bits (2431), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/680 (67%), Positives = 539/680 (79%), Gaps = 38/680 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNG----- 133
           AYLS++QRGG IQPFGCMLAVEE TFRII YSEN +EMLDL S+S    D + +      
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFRIIAYSENAVEMLDLMSQSVPNMDMDRDDAMGSH 60

Query: 134 ------LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
                  IG D R LFTP S  +L KAA ++EISL+NPI VHS  ++  KPFYAI+HRID
Sbjct: 61  GGGRVITIGTDVRALFTPASAWALEKAAMAQEISLMNPIWVHS--KNTNKPFYAIVHRID 118

Query: 188 VGIVIDLEPSKSGDPALSLAGA-----VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
           VG+VIDLEP ++G      AG      VQSQKLAV AISRLQ+LP GDIG+LCD VVEDV
Sbjct: 119 VGMVIDLEPVRTGSGGGGDAGLSAAGAVQSQKLAVRAISRLQSLPAGDIGVLCDAVVEDV 178

Query: 243 QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
           ++LTGYDRVM+Y FH+D+HGEVV+E+RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI
Sbjct: 179 RELTGYDRVMVYKFHEDEHGEVVAEMRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMI 238

Query: 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-- 360
           CDC A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +   
Sbjct: 239 CDCRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEG 298

Query: 361 --------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQL 406
                         MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL
Sbjct: 299 GGGSGSGSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQL 358

Query: 407 AEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQL 466
            EK+ILRTQ LLCDMLLRDAP  I+T SPS MDLVKCDGAALYYGG CW++GVTPTE+Q+
Sbjct: 359 MEKHILRTQTLLCDMLLRDAPIGILTHSPSTMDLVKCDGAALYYGGMCWMLGVTPTEAQI 418

Query: 467 KDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAK 526
           KDIA WLL  HGD TGLSTDSLA+A YPGAA LG AVCGMA ARITSKDFLFWFRSHTAK
Sbjct: 419 KDIADWLLEYHGDSTGLSTDSLADADYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAK 478

Query: 527 EVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQ 586
           E+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ
Sbjct: 479 EMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQ 538

Query: 587 EMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAK 646
           ++++ N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAK
Sbjct: 539 DIDDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAK 597

Query: 647 VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706
           VAELTGLP  EAMGKSL+ +++  ES   ++ ++  AL GEE+KNVE+KLR F  QKQ  
Sbjct: 598 VAELTGLPVGEAMGKSLVHDLIFHESADTMDKMLYHALRGEEEKNVEIKLRTFGPQKQKK 657

Query: 707 VVYILVNACTSRDYKNNVKG 726
            +Y++VNAC+SRDY +N+ G
Sbjct: 658 AIYLVVNACSSRDYTDNIVG 677


>gi|406685483|gb|AFS51182.1| phytochrome P, partial [Araucaria subulata]
          Length = 662

 Score =  940 bits (2429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/665 (69%), Positives = 531/665 (79%), Gaps = 36/665 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---------SRSEDFELN 132
           AYLS++QRGG IQPFGCMLAVEE TF II YSEN +EMLDL           R E    +
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFLIIAYSENAVEMLDLMPQSVPNMDMDRDEAMTSH 60

Query: 133 G-----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
           G      IG D RTLFT  S  +L KAA + EISL+NPI VHS  ++  KPFYAI+HRID
Sbjct: 61  GGGRVMTIGTDVRTLFTTSSARALEKAAMAHEISLMNPIWVHS--KNTNKPFYAIVHRID 118

Query: 188 VGIVIDLEPSKSG-----DPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDV 242
           VG+V+DLEP ++G     D ALS AGAVQSQKLAV AIS LQ+LP GDIGLLCDTVVEDV
Sbjct: 119 VGMVMDLEPVRTGSGGGGDAALSAAGAVQSQKLAVRAISGLQSLPAGDIGLLCDTVVEDV 178

Query: 243 QKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMI 302
           ++LTGYDRVM+Y FH+D+HGEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI
Sbjct: 179 RELTGYDRVMVYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMI 238

Query: 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-- 360
           CDC A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +   
Sbjct: 239 CDCRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEG 298

Query: 361 ------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                       MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL E
Sbjct: 299 GGGGGSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTE 358

Query: 409 KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
           K+ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KD
Sbjct: 359 KHILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKD 418

Query: 469 IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
           IA WLL  H D TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+
Sbjct: 419 IADWLLEYHVDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEM 478

Query: 529 KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
           KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++
Sbjct: 479 KWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI 538

Query: 589 EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
           ++ N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVA
Sbjct: 539 DDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVA 597

Query: 649 ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
           ELTGLP  EAMGKSL+ +++ EES   ++ ++  AL GEE+KNVE+KLR F  QKQ   +
Sbjct: 598 ELTGLPVGEAMGKSLVHDLIFEESANTLDKMLYHALRGEEEKNVEIKLRTFAPQKQKKAI 657

Query: 709 YILVN 713
           Y++VN
Sbjct: 658 YLVVN 662


>gi|406685281|gb|AFS51081.1| phytochrome P, partial [Taxus baccata]
          Length = 670

 Score =  940 bits (2429), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/674 (68%), Positives = 543/674 (80%), Gaps = 33/674 (4%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---SRSEDF------ELN 132
           AYLS++QRGG++QPFGCMLAVEE +F+II YSEN LEML++    S+S+        E  
Sbjct: 1   AYLSRMQRGGILQPFGCMLAVEESSFKIIAYSENALEMLNITPPPSQSQSVPNMVGGESE 60

Query: 133 GL--IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
           G+  IG D R LFTP S  +L +AA ++EISL NPI+V SNS    KPFYAI+HRIDVGI
Sbjct: 61  GIETIGSDIRRLFTPSSVRNLERAAMAQEISLTNPIVVDSNS---GKPFYAIVHRIDVGI 117

Query: 191 VIDLEPSKSGDPALSLA----GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLT 246
           VIDLEP + GD A  ++    G+V SQ+LAV A SRLQA+P GDIGLLCDTVVE+V++LT
Sbjct: 118 VIDLEPVRRGDAAALVSWGGGGSVPSQRLAVRATSRLQAVPSGDIGLLCDTVVEEVRELT 177

Query: 247 GYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCH 306
           GYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIP+A+RFLF QNRVRMICDC 
Sbjct: 178 GYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPRASRFLFMQNRVRMICDCR 237

Query: 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS--------- 357
           A PV VIQS ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N          
Sbjct: 238 ATPVKVIQSGELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIVNGNGNGNDEDG 297

Query: 358 -----KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNIL 412
                + SMKLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL E NIL
Sbjct: 298 GGGSGRSSMKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQLIENNIL 357

Query: 413 RTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWW 472
           RTQ LLCDMLLRDAP  I+TQSPSIMDLVKCDGAALYYGG CWL+GVTP E+Q+KDIA W
Sbjct: 358 RTQTLLCDMLLRDAPIGILTQSPSIMDLVKCDGAALYYGGMCWLLGVTPMEAQIKDIAEW 417

Query: 473 LLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGG 532
           LL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLF FRSHTAKE+KWGG
Sbjct: 418 LLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFRFRSHTAKEMKWGG 477

Query: 533 AKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEN 592
           AKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++
Sbjct: 478 AKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI-DDS 536

Query: 593 DSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTG 652
           D+K   + Q N  K+QG+DELSSVA EMVRLIETATAPI  VDSSG +NGWNAKV ELTG
Sbjct: 537 DTKTMVHAQLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSSGIVNGWNAKVGELTG 596

Query: 653 LPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILV 712
           LP  EAMGKSL+ ++V +ES   VE ++  A+ GEE+KNVE+KLR F  QKQ  V+Y++V
Sbjct: 597 LPVGEAMGKSLVHDLVFDESVETVEKMLYHAMRGEEEKNVEIKLRTFGPQKQKKVIYLVV 656

Query: 713 NACTSRDYKNNVKG 726
           NAC+SRDY +N+ G
Sbjct: 657 NACSSRDYTDNIVG 670


>gi|406685669|gb|AFS51275.1| phytochrome P, partial [Taxus canadensis]
          Length = 670

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/674 (68%), Positives = 542/674 (80%), Gaps = 33/674 (4%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---SRSEDF------ELN 132
           AYLS++QRGG++QPFGCMLAVEE +F+II YSEN LEML++    S+S+        E  
Sbjct: 1   AYLSRMQRGGILQPFGCMLAVEESSFKIIAYSENALEMLNITPPPSQSQSVPNMVGGESE 60

Query: 133 GL--IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
           G+  IG D R LFTP S  +L +AA ++EISL NPI+V SNS    KPFYAI+HRIDVGI
Sbjct: 61  GIETIGSDIRRLFTPSSVRNLERAAMAQEISLTNPIVVDSNS---GKPFYAIVHRIDVGI 117

Query: 191 VIDLEPSKSGDPALSLA----GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLT 246
           VIDLEP + GD A  ++    G+V SQ+LAV A SRLQA+P GDIGLLCDTVVE+V++LT
Sbjct: 118 VIDLEPVRRGDAAALVSWGGGGSVPSQRLAVRATSRLQAVPSGDIGLLCDTVVEEVRELT 177

Query: 247 GYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCH 306
           GYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC 
Sbjct: 178 GYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCR 237

Query: 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS--------- 357
           A PV VIQS ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N          
Sbjct: 238 ATPVKVIQSGELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIVNGNGNGNDEDG 297

Query: 358 -----KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNIL 412
                + SMKLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL E NIL
Sbjct: 298 GGGSGRSSMKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQLIENNIL 357

Query: 413 RTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWW 472
           RTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG CWL+GVTP E+Q+KDIA W
Sbjct: 358 RTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMCWLLGVTPMEAQIKDIAEW 417

Query: 473 LLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGG 532
           LL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGG
Sbjct: 418 LLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGG 477

Query: 533 AKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEN 592
           AKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++
Sbjct: 478 AKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI-DDS 536

Query: 593 DSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTG 652
           D+K   + + N  K+QG+DELSSVA  MVRLIETATAPI  VDSSG +NGWNAKV ELTG
Sbjct: 537 DTKTMVHARLNDLKLQGIDELSSVASGMVRLIETATAPILAVDSSGIVNGWNAKVGELTG 596

Query: 653 LPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILV 712
           LP  EAMGKSL+ ++V +ES   VE ++  A+ GEE+KNVE+KLR F  QKQ  V+Y++V
Sbjct: 597 LPVGEAMGKSLVHDLVFDESVETVEKMLYHAMRGEEEKNVEIKLRTFGPQKQKKVIYLVV 656

Query: 713 NACTSRDYKNNVKG 726
           NA +SRDY +N+ G
Sbjct: 657 NAYSSRDYTDNIVG 670


>gi|406685293|gb|AFS51087.1| phytochrome P, partial [Taxus fuana]
          Length = 670

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/674 (68%), Positives = 542/674 (80%), Gaps = 33/674 (4%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR---SRSEDF------ELN 132
           AYLS++QRGG++QPFGCMLAVEE +F+II YSEN LEML++    S+S+        E  
Sbjct: 1   AYLSRMQRGGILQPFGCMLAVEESSFKIIAYSENALEMLNITPPPSQSQSVPNMVGGESE 60

Query: 133 GL--IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGI 190
           G+  IG D R LFTP S  +L +AA ++EISL NPI+V SNS    KPFYAI+HRIDVGI
Sbjct: 61  GIETIGSDIRRLFTPSSVRNLERAAMAQEISLTNPIVVDSNS---GKPFYAIVHRIDVGI 117

Query: 191 VIDLEPSKSGDPALSLA----GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLT 246
           VIDLEP + GD A  ++    G+V SQ+LAV A SRLQA+P GDIGLLCDTVVE+V++LT
Sbjct: 118 VIDLEPVRRGDAAALVSWGGGGSVPSQRLAVRATSRLQAVPSGDIGLLCDTVVEEVRELT 177

Query: 247 GYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCH 306
           GYDRVM+Y FH+D+ GEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF Q RVRMICDC 
Sbjct: 178 GYDRVMVYKFHEDERGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQTRVRMICDCR 237

Query: 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS--------- 357
           A PV VIQS ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N          
Sbjct: 238 ATPVKVIQSGELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIVNGNGNGNDEDG 297

Query: 358 -----KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNIL 412
                + SMKLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL E NIL
Sbjct: 298 GGGSGRSSMKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQLIENNIL 357

Query: 413 RTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWW 472
           RTQ LLCDMLLRDAP  I+TQSPSIMDLVKC+GAALYYGG CWL+GVTP E+Q+KDIA W
Sbjct: 358 RTQTLLCDMLLRDAPIGILTQSPSIMDLVKCEGAALYYGGMCWLLGVTPMEAQIKDIAEW 417

Query: 473 LLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGG 532
           LL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGG
Sbjct: 418 LLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGG 477

Query: 533 AKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEN 592
           AKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++
Sbjct: 478 AKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI-DDS 536

Query: 593 DSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTG 652
           D+K   + + N  K+QG+DELSSVA EMVRLIETATAPI  VDSSG +NGWNAKV ELTG
Sbjct: 537 DTKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSSGIVNGWNAKVGELTG 596

Query: 653 LPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILV 712
           LP  EAMGKSL+ ++V +ES   VE ++  A+ GEE+KNVE+KLR F  QKQ  V+Y++V
Sbjct: 597 LPVGEAMGKSLVHDLVFDESVKTVEKMLYHAMRGEEEKNVEIKLRTFGPQKQKEVIYLVV 656

Query: 713 NACTSRDYKNNVKG 726
           NAC+SRDY +N+ G
Sbjct: 657 NACSSRDYTDNIVG 670


>gi|406685275|gb|AFS51078.1| phytochrome P, partial [Cephalotaxus mannii]
          Length = 675

 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/679 (68%), Positives = 539/679 (79%), Gaps = 38/679 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS------------EDF 129
           AYLS++QRGG IQPFGCMLAVEE +F+II YSEN LEMLD+   S            E  
Sbjct: 1   AYLSRMQRGGSIQPFGCMLAVEETSFKIIAYSENALEMLDVMPHSHSHSHSHSVPTMEGG 60

Query: 130 ELNGL--IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRID 187
           E  G+  IG D R LFTP SG +L +AA S+EISL NPI + SNS    KPFYAI+HRID
Sbjct: 61  ESEGIVTIGSDVRRLFTPSSGRNLERAAMSQEISLANPIAMDSNS---GKPFYAIVHRID 117

Query: 188 VGIVIDLEPSKSGDPALSLA--------GAVQSQKLAVSAISRLQALPGGDIGLLCDTVV 239
           VGIVIDLE  + GD A  ++        G V SQ+LAV A SRLQA+P GDIGLLCDTVV
Sbjct: 118 VGIVIDLELVRRGDAAALVSWGGGGLGGGTVPSQRLAVRATSRLQAVPSGDIGLLCDTVV 177

Query: 240 EDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299
           E+V++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRV
Sbjct: 178 EEVRELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRV 237

Query: 300 RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-- 357
           RMICDC A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N   
Sbjct: 238 RMICDCRATPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIVNGNG 297

Query: 358 ----------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLA 407
                     + SMKLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL 
Sbjct: 298 NDEDGVSGSGRSSMKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQLT 357

Query: 408 EKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLK 467
           E NILRTQ LLCDMLLRDAP  IV+QSPSIMDLVKCDGAALYYGG  WL+GVTP E+Q+K
Sbjct: 358 ENNILRTQTLLCDMLLRDAPIGIVSQSPSIMDLVKCDGAALYYGGMFWLLGVTPVEAQIK 417

Query: 468 DIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKE 527
           DIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE
Sbjct: 418 DIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKE 477

Query: 528 VKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQE 587
           +KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SF++
Sbjct: 478 MKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFED 537

Query: 588 MEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
           + +++D+K   + + N  K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKV
Sbjct: 538 I-DDSDTKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSTGIVNGWNAKV 596

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
            ELTGLP  EAMGKSL+ ++V EES   VE ++  AL GEE+KNVE+KLR F  QKQ  V
Sbjct: 597 GELTGLPVGEAMGKSLVHDLVFEESIETVEKMLYHALRGEEEKNVEIKLRTFGPQKQKKV 656

Query: 708 VYILVNACTSRDYKNNVKG 726
           +Y++VNAC+SRDY +N+ G
Sbjct: 657 IYLVVNACSSRDYTDNIVG 675


>gi|327241176|gb|AEA40432.1| phytochrome A type 1 [Triticum dicoccoides]
          Length = 1130

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1105 (44%), Positives = 686/1105 (62%), Gaps = 62/1105 (5%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPE---EQITAYLSKIQRGGLIQ 94
            ++     DA L AEFE+S  S        +    P  + E   E++ AYL  IQRG +IQ
Sbjct: 22   VLAQTTLDAELNAEFEESSDSFDDSKLVEAQRDTPTVLQEGRSEKVIAYLQHIQRGKMIQ 81

Query: 95   PFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASL 151
             FGC+LA++E +F +I +SEN  EML   S    S D      IG + R+LFT    A+L
Sbjct: 82   SFGCLLALDEKSFNVIAFSENAPEMLTTVSHAVPSVDDPPRLDIGTNVRSLFTDQGAAAL 141

Query: 152  AKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQ 211
             KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP    +   + AGA+Q
Sbjct: 142  HKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVNPTEFPATAAGALQ 199

Query: 212  SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
            S KLA  AIS++QALPGG + LLC+TVV++V  LTGYDRVM Y FH+D+HGEV +EI + 
Sbjct: 200  SYKLAAKAISKIQALPGGSMELLCNTVVKEVFDLTGYDRVMAYKFHEDNHGEVFAEITKP 259

Query: 272  DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
             LEPYLG+H+PA DIPQAARFLF +N+VR+ICD  A P+ VI+ + L   + L  S LR+
Sbjct: 260  GLEPYLGLHYPATDIPQAARFLFMKNKVRLICDVRARPIKVIEDEALPFDISLCGSALRA 319

Query: 332  PHGCHLQYMTNMGSIASLVMAVIINSKDSMK---------------LWGLVVCHHTSPRY 376
             H CHLQYM NM SIASLVMAV++N  +                  LWGL+VCHH SPRY
Sbjct: 320  AHSCHLQYMENMNSIASLVMAVVVNENEEDDEVGSEQPAQQQKKKILWGLIVCHHESPRY 379

Query: 377  IPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVTQSP 435
            +PFPLRYACEFL Q F++ +  E +V  QL EK+ILR Q +L DML ++A P +IV+ +P
Sbjct: 380  VPFPLRYACEFLAQVFAVHVNKEFEVQKQLREKSILRMQTILSDMLFKEASPLTIVSGAP 439

Query: 436  SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
            +IMDL+KCDGAAL YGG+ W +G  PTESQ++D+A WL   H D TGLST+SL +AGYPG
Sbjct: 440  NIMDLIKCDGAALLYGGKVWRLGTAPTESQIRDLALWLSEVHMDSTGLSTESLHDAGYPG 499

Query: 496  AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
            A+ LG  VCGMA A+I S D LFWFRS TAKE++WGGAK+ P   D+  +MHPR SFKAF
Sbjct: 500  ASALGDTVCGMAVAKINSSDILFWFRSPTAKEIRWGGAKNDPSDMDDSRRMHPRLSFKAF 559

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
            LEVVK +S  W  SE++AIHSLQ+++R +   + +    K   + Q    K+ G+ EL +
Sbjct: 560  LEVVKMKSLAWTDSEMDAIHSLQLILRGAVDGVVKPT-GKASLDEQIGDLKLDGLAELQA 618

Query: 616  VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
            V  EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V E S   
Sbjct: 619  VTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEESSVSV 677

Query: 676  VENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735
            V+ ++  AL G+E+K V  +++    ++    V ++VNAC SRD  ++V GVCFV QD+T
Sbjct: 678  VQRMLYLALQGKEEKEVRFEVKTHGPKRDDGPVILVVNACASRDLHDDVVGVCFVAQDMT 737

Query: 736  HEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI-- 793
              K++MDKF R++GDY AII + NPLIPPIF +DE+  C EWNAAM K+TGW R EV+  
Sbjct: 738  VHKLVMDKFTRVEGDYMAIIHNPNPLIPPIFGADESGWCCEWNAAMTKLTGWHREEVLDK 797

Query: 794  -------------------------------GITGQGTENFPFGFFNRQGQFVEVALTAS 822
                                            + G+ TE  PFGFF+R G++ E  L+ +
Sbjct: 798  MLLGEVFDSRNASWPLKNKDAFVSLCVVINSALAGEETEKAPFGFFDRSGKYTECLLSVN 857

Query: 823  RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRF 882
            RR +  G + G FCF+ I   +LQ AL+ Q   +     ++K  +Y+R  + NPL+G+ +
Sbjct: 858  RRQNEGGLITGVFCFIHIPSHELQQALQVQQASEQKSLKRLKAFSYMRHAINNPLSGMLY 917

Query: 883  VHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFLLGNIL 940
              K L+++ ++E Q + +  +D C  Q+  I+  +D   I E +  ++L+  EF+L +++
Sbjct: 918  SRKALKNTDLNEEQMRQIHVADNCHHQLNKILADLDQHNIMEKSSCLDLEMAEFVLQDVV 977

Query: 941  DAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWV 1000
             A VSQV++  + K + +  ++PE      + GD +RLQ +LSDFL   V+ +P     V
Sbjct: 978  VAAVSQVLIACQGKGIRVSCNLPERFMKQLVYGDGVRLQQILSDFLSISVKFSPVGSS-V 1036

Query: 1001 EIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKL 1060
            EI        I +    + ++ R+ H G G+P+ L+  M+       + EGLGL +SR L
Sbjct: 1037 EISAKATKNSIGENLHLIDLELRIKHQGLGVPAELMAQMFEEDEPQQSEEGLGLLVSRNL 1096

Query: 1061 LIMMNGRVRYVRENSKCYFVIDLEL 1085
            L +MNG VR++RE     F++  EL
Sbjct: 1097 LRLMNGDVRHLREAGVSIFILTAEL 1121


>gi|327241172|gb|AEA40430.1| phytochrome A type 1 [Triticum aestivum]
          Length = 1130

 Score =  936 bits (2420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1108 (44%), Positives = 690/1108 (62%), Gaps = 68/1108 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVIS---PPEGVPE---EQITAYLSKIQRGG 91
            ++     DA L A FE+S     SF+YS+ V +    P  + E   E++ AYL  IQRG 
Sbjct: 22   VLAQTTLDAELNAGFEES---SDSFDYSKLVEAQRDTPTVLQEGRSEKVIAYLQHIQRGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSG 148
            +IQ FGC+LA++E +F +I +S N  EML   S    S D      IG + R+LFT    
Sbjct: 79   MIQSFGCLLALDEKSFNVIAFSGNAPEMLTTVSHAVPSVDDPPRLDIGTNVRSLFTDQGA 138

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            A+L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP    +   + AG
Sbjct: 139  AALHKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVNPTEFPATAAG 196

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AIS++QALPGG + LLC+TVV++V  LTGYDRVM Y FH+D+HGEV +EI
Sbjct: 197  ALQSYKLAAKAISKIQALPGGSMELLCNTVVKEVFDLTGYDRVMAYKFHEDNHGEVFAEI 256

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             +  LEPYLG+H+PA DIPQAARFLF +N+VR+ICD  A P+ VI+ + L   + L  S 
Sbjct: 257  TKPGLEPYLGLHYPATDIPQAARFLFMKNKVRLICDVRARPIKVIEDEALPFDISLCGSA 316

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMK---------------LWGLVVCHHTS 373
            LR+ H CHLQYM NM SIASLVMAV++N  +                  LWGL+VCHH S
Sbjct: 317  LRAAHSCHLQYMENMNSIASLVMAVVVNENEEDDEVGSEQPAQQQKKKILWGLIVCHHES 376

Query: 374  PRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVT 432
            PRY+PFPLRYACEFL Q F++ +  E +V  QL EK+ILR Q +L DML ++A P +IV+
Sbjct: 377  PRYVPFPLRYACEFLAQVFAVHVNKEFEVQKQLREKSILRMQTILSDMLFKEASPLTIVS 436

Query: 433  QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
             +P+IMDL+KCDGAAL YGG+ W +G  PTESQ++D+A WL   H D TGLST+SL +AG
Sbjct: 437  GAPNIMDLIKCDGAALLYGGKVWRLGTAPTESQIRDLALWLSEVHMDSTGLSTESLHDAG 496

Query: 493  YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
            YPGA+ LG  VCGMA A+I S D LFWFRS TAKE++WGGAK+ P   D+  +MHPR SF
Sbjct: 497  YPGASALGDTVCGMAVAKINSSDILFWFRSPTAKEIRWGGAKNDPSDMDDSRRMHPRLSF 556

Query: 553  KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612
            KAFLEVVK +S  W  SE++AIHSLQ+++R +   + +    K   + Q    K+ G+ E
Sbjct: 557  KAFLEVVKMKSLAWADSEMDAIHSLQLILRGAVDGVVKPT-GKASLDEQIGDLKLDGLAE 615

Query: 613  LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
            L +V  EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V E S
Sbjct: 616  LQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEESS 674

Query: 673  QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQ 732
               V+ ++  AL G+E+K V  +++    ++    V ++VNAC SRD  ++V GVCFV Q
Sbjct: 675  VSVVQRMLYLALQGKEEKEVRFEVKTHGPKRDDGPVILVVNACASRDLHDDVVGVCFVAQ 734

Query: 733  DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV 792
            D+T  K++MDKF R++GDY AII + NPLIPPIF +DE+  C EWNAAM K+TGW R EV
Sbjct: 735  DMTVHKLVMDKFTRVEGDYMAIIHNPNPLIPPIFGADESGWCCEWNAAMTKLTGWHREEV 794

Query: 793  I---------------------------------GITGQGTENFPFGFFNRQGQFVEVAL 819
            +                                  + G+ TE  PFGFF+R G++ E  L
Sbjct: 795  LDKMLLGEVFDSRNASCLLKNKDAFVSLCVVINSALAGEETEKAPFGFFDRSGKYTECLL 854

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            + +RR +  G + G FCF+ I   +LQ AL+ Q   +     ++K  +Y+R  + NPL+G
Sbjct: 855  SVNRRQNEGGLITGVFCFIHIPSHELQQALQVQQASEQKSLKRLKAFSYMRHAINNPLSG 914

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFLLG 937
            + +  K L+++ ++E Q + +  +D C  Q+  I+  +D   I E +  ++L+  EF+L 
Sbjct: 915  MLYSRKALKNTDLNEEQMRQIHVADNCHHQLNKILADLDQHNIMEKSSCLDLEMAEFVLQ 974

Query: 938  NILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPD 997
            +++ A VSQV++  + K + +  ++PE      + GD +RLQ +LSDFL   V+ +P   
Sbjct: 975  DVVVAAVSQVLIACQGKGIRVSCNLPERFMKQLVYGDGVRLQQILSDFLSISVKFSPVGS 1034

Query: 998  GWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLS 1057
              VEI        I +    + ++ R+ H G G+P+ L+  M+       + EGLGL +S
Sbjct: 1035 S-VEISAKATKNSIGENLHLIDLELRIKHQGLGVPAELMAQMFEEDEPQQSEEGLGLLVS 1093

Query: 1058 RKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            R LL +MNG VR++RE     F++  EL
Sbjct: 1094 RNLLRLMNGDVRHLREAGVSIFILTAEL 1121


>gi|10639836|emb|CAC11136.1| phytochrome N [Pinus sylvestris]
          Length = 876

 Score =  935 bits (2417), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/875 (52%), Positives = 606/875 (69%), Gaps = 51/875 (5%)

Query: 259  DDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKEL 318
            DDHGEV+SE+RR DLEPYLG+H+PA DIPQA+RFLF +NRVRMICDC+A PV VIQ + L
Sbjct: 1    DDHGEVISEMRRYDLEPYLGLHYPATDIPQASRFLFMRNRVRMICDCYAQPVAVIQDERL 60

Query: 319  KQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD------------SMKLWGL 366
             + L    STLR+PHGCH QYM NMGSIASLVMAV+IN K+              +LWGL
Sbjct: 61   PRDLSFCGSTLRAPHGCHAQYMANMGSIASLVMAVVINEKELDGDSEGQMQQKGRRLWGL 120

Query: 367  VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
            VVCHHTSPRY+PFPLRYACEFL+Q F +QL  E+++A Q+ EK ILRTQ LLCDMLLRD 
Sbjct: 121  VVCHHTSPRYVPFPLRYACEFLMQVFGIQLNKEVELAAQIREKQILRTQTLLCDMLLRDT 180

Query: 427  PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
            P  IVTQ P+IMDLV+CDGAALYY    WL+GVTPTE+Q++DI  WL  +H D TGLSTD
Sbjct: 181  PLGIVTQKPNIMDLVRCDGAALYYERNFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTD 240

Query: 487  SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
            SL  AGYPGA  LG AVCG+A  RI SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KM
Sbjct: 241  SLVYAGYPGAESLGNAVCGIAAVRINSKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKM 300

Query: 547  HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
            HPRSSF AFLEVVK RS  WE  E++AIHSLQ+++R S +E  + +   +  N Q N  K
Sbjct: 301  HPRSSFNAFLEVVKMRSLSWEDVEMDAIHSLQLILRGSRKET-DGSGRNISINRQLNDLK 359

Query: 607  MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
            +Q +DEL++V  EMVRLIETATAPI  VD+ G +NGWN K AELTGL   E +G+ LI+ 
Sbjct: 360  LQEMDELNAVTNEMVRLIETATAPILAVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN- 418

Query: 667  VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
            +V E S   V+ ++  AL G E++NV+++L++   ++    V +LVNAC+SRD K NV G
Sbjct: 419  LVEETSAENVKRMLHLALQGVEEQNVQIELKRHGSEEDKGPVVLLVNACSSRDLKENVVG 478

Query: 727  VCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTG 786
            VCFV QD+T +K++MDKF R+QGDY AI+Q+ +PLIPPIF +DE  C  E N+AMEK++G
Sbjct: 479  VCFVAQDVTGQKIVMDKFTRIQGDYRAIVQNPSPLIPPIFGTDECGCVPE-NSAMEKLSG 537

Query: 787  WMRHEVI---------------------------------GITGQGTENFPFGFFNRQGQ 813
            W R E+I                                  +TGQ TE FPFGFF+R G+
Sbjct: 538  WKREEIIDKMLLGEVFGTRTACCRLKGQNALTQLRIILNSSMTGQETEKFPFGFFDRHGK 597

Query: 814  FVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEV 873
            +VE  L+A+++ D EGK+ G FCF+ I  P+LQ AL  Q + +     +++ L Y+R E+
Sbjct: 598  YVETLLSANKKLDEEGKITGVFCFLHIASPELQQALYVQHMLEQAAMKRLQALTYLRLEI 657

Query: 874  KNPLNGIRFVHKLLESSS-ISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSE 932
            KNPL GI F  K++E +  + E+QRQ +ETS  C++QI+ I+D MDL  IE+  ++L + 
Sbjct: 658  KNPLYGIMFTQKMMERTDFLREDQRQLVETSALCQKQILKILDDMDLESIEDRYLDLDTV 717

Query: 933  EFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRH 992
            EF LG +LDAV+SQ M+   +K L + +D+P EI    L GD+ RLQ +L++FL  V++ 
Sbjct: 718  EFTLGALLDAVISQGMIQSEEKGLEIGYDLPREITTTGLYGDQSRLQQILANFLVTVIQF 777

Query: 993  APSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGL 1052
             P+ + WV IKV P  + +      + ++FR+THPG G+P  L++ M+N  +   + EG 
Sbjct: 778  TPA-EKWVRIKVSPTKRHLGGGVYVIGIEFRITHPGPGLPEKLVQQMFN-FDPDMSQEGF 835

Query: 1053 GLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKT 1087
            GL + RKL+ +MNG V+Y+R      FVI +EL T
Sbjct: 836  GLLICRKLVRLMNGDVQYLRGGGTSSFVIVVELAT 870


>gi|327241182|gb|AEA40435.1| phytochrome A [Aegilops speltoides]
          Length = 1130

 Score =  935 bits (2416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1108 (44%), Positives = 689/1108 (62%), Gaps = 68/1108 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVIS---PPEGVPE---EQITAYLSKIQRGG 91
            ++     DA L AEFE+S     SF+YS+ V +    P  + E   E++ AYL  IQRG 
Sbjct: 22   VLAQTTLDAQLNAEFEES---SDSFDYSKLVEAQRDTPTVLQEGRSEKVIAYLQHIQRGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSG 148
            +IQPFGC+LA++E +F +I +SEN  EML   S    S D      IG + R+LFT    
Sbjct: 79   MIQPFGCLLALDEKSFNVIAFSENAPEMLTTASHAVPSVDDPPRLDIGTNVRSLFTDQGA 138

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
             +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP    +   S AG
Sbjct: 139  TALHKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVNPTEFPASAAG 196

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AIS++QALPGG I LLC+TVV++V +LTGYDRVM Y FH+D+HGEV +EI
Sbjct: 197  ALQSYKLAAKAISKIQALPGGSIELLCNTVVKEVFELTGYDRVMAYKFHEDNHGEVFAEI 256

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             +  LEPYLG+H+PA DIPQAARFLF +N+VRMICD  A  + VI+ + L   + L  S 
Sbjct: 257  TKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDVRARSIKVIEDEALPFDISLCGSA 316

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMK---------------LWGLVVCHHTS 373
            LR+ H CHLQYM NM SIASLVMAV++N  +                  LWGLVVCHH S
Sbjct: 317  LRAAHSCHLQYMENMNSIASLVMAVVVNENEEDDEVGSEQPAQQQKKKILWGLVVCHHES 376

Query: 374  PRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVT 432
            PRY+PFPLRYACEFL Q F++ +  E +V  QL EK+ILR Q +L DML ++A P +IV+
Sbjct: 377  PRYVPFPLRYACEFLAQVFAVHVNKEFEVQKQLREKSILRMQTILSDMLFKEASPLTIVS 436

Query: 433  QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
             +P+IMDL+KCDGAAL YG + W +G  PTE Q++D+A WL   H D TGLST+SL +AG
Sbjct: 437  GAPNIMDLIKCDGAALLYGDKVWRLGNAPTEFQIRDLALWLSEVHMDSTGLSTESLHDAG 496

Query: 493  YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
            YPGA+ LG +VCGMA A+I S D LFWFRSHTA E++WGGAK+ P   D+  +MHPR SF
Sbjct: 497  YPGASALGDSVCGMAVAKINSSDILFWFRSHTADEIRWGGAKNDPSDVDDSRRMHPRLSF 556

Query: 553  KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612
            KAFLEVVK +S  W  SE++AIHSLQ+++R +   + +    K   + Q    K+ G+ E
Sbjct: 557  KAFLEVVKMKSLAWTDSEMDAIHSLQLILRGAVDGVVKPT-GKASLDEQIGDLKLDGLAE 615

Query: 613  LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
            L +V  EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V E S
Sbjct: 616  LQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEESS 674

Query: 673  QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQ 732
               V+ ++  AL G+E+K V  +++    ++    V ++ NAC SRD  ++V GVCFV Q
Sbjct: 675  VSVVQRMLYLALQGKEEKEVRFEVKTHGPKRDDGPVILVGNACASRDLHDDVVGVCFVAQ 734

Query: 733  DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV 792
            D+T  K++MDKF R++GDY AII + NPLIPPIF +DE   C EWNAAM K+TGW R EV
Sbjct: 735  DVTVHKLVMDKFTRVEGDYMAIIHNPNPLIPPIFGADEFGWCCEWNAAMTKLTGWHREEV 794

Query: 793  I---------------------------------GITGQGTENFPFGFFNRQGQFVEVAL 819
            +                                  + G+ TE  PFGFF+R G++ +  L
Sbjct: 795  LNKMLLGEVFDSSNASCLLKNKDAFVSLCVVINSALAGEETEKAPFGFFDRSGKYTDCLL 854

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            + +RR +  G + G FCF+ I   +LQ AL+ Q   +     ++K  +Y+R  + NPL+G
Sbjct: 855  SVNRRENEGGLITGVFCFIHIPSHELQQALQVQQASEQTSLKRLKAFSYMRHAINNPLSG 914

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFLLG 937
            + +  K L+++ ++E Q + +  SD C  Q+  I+  +D   I E +  ++L+  EF+L 
Sbjct: 915  MLYSRKALKNTDLNEEQMRQIHVSDNCHHQLNKILADLDQDNIMEKSSCLDLEMAEFVLQ 974

Query: 938  NILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPD 997
            +++ A VSQV++    K + +  ++PE      + GD +RLQ +LSDFL   V+ +P   
Sbjct: 975  DVVLAAVSQVLIACEGKGIRVSCNLPERFMKQLIYGDGVRLQQILSDFLSVSVKFSPV-G 1033

Query: 998  GWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLS 1057
            G ++I        I +    + ++ R+ H G G+P+ L+  M+   +   + EGLGL +S
Sbjct: 1034 GSIDISAKATKNSIGENLHLIDLELRIKHQGLGVPAELMAQMFEEDDAGQSEEGLGLLVS 1093

Query: 1058 RKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
              LL +MNG VR++RE     F++  EL
Sbjct: 1094 SNLLRLMNGDVRHLREAGLSVFILTAEL 1121


>gi|406685301|gb|AFS51091.1| phytochrome P, partial [Torreya grandis]
          Length = 675

 Score =  934 bits (2415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/679 (68%), Positives = 535/679 (78%), Gaps = 38/679 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLD----------LRSRSEDFEL 131
           AYLS++QRGG IQPFGCMLAVEE +F+II YSEN LEMLD          +  R  D + 
Sbjct: 1   AYLSRMQRGGSIQPFGCMLAVEETSFKIIAYSENALEMLDVMPHFQSVPNMEGRGGDCDG 60

Query: 132 NGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIV 191
              IG D R LFTP SG +L +AA ++EISL NPI + SNS    KPFYAI+HRIDVGIV
Sbjct: 61  FLTIGSDVRRLFTPSSGRNLERAAMAQEISLTNPIAMESNS---GKPFYAIVHRIDVGIV 117

Query: 192 IDLEPSKSGDPALSLAGA--------VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQ 243
           IDLEP + GD A  ++ A        V SQ+LAV A SRLQ++P GDIGLLCDTVVE+V+
Sbjct: 118 IDLEPVRRGDAAALVSWAGGGGGGGTVPSQRLAVRATSRLQSVPSGDIGLLCDTVVEEVR 177

Query: 244 KLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMIC 303
           +LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMIC
Sbjct: 178 ELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMIC 237

Query: 304 DCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---- 359
           DC A PV V Q++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N       
Sbjct: 238 DCRATPVKVKQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIVNGNGIDED 297

Query: 360 ------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLA 407
                       S+KLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL 
Sbjct: 298 GVTGSGSGSGRSSIKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQLI 357

Query: 408 EKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLK 467
           E +ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  WL+GVTPTE+QLK
Sbjct: 358 ENSILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMFWLLGVTPTEAQLK 417

Query: 468 DIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKE 527
           DIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE
Sbjct: 418 DIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKE 477

Query: 528 VKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQE 587
           +KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RSFPWE  E++AIHSLQ+++R SFQ+
Sbjct: 478 MKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSFPWENVEMDAIHSLQLILRGSFQD 537

Query: 588 MEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
           +++   +K   + + N  K+QG+DELSSVA EMVRLIETATAPI  VDSSG +NGWNAKV
Sbjct: 538 IDDSG-TKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSSGIVNGWNAKV 596

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
            ELTGLP  EAMGKSL+ ++V EES   VE ++  AL GEE+KNVE+KLR F  QKQ  V
Sbjct: 597 GELTGLPVGEAMGKSLVHDLVFEESIETVEKMLYHALRGEEEKNVEIKLRTFGPQKQKKV 656

Query: 708 VYILVNACTSRDYKNNVKG 726
           +Y++VNAC+SRDY + + G
Sbjct: 657 IYLVVNACSSRDYTDKIVG 675


>gi|77963960|gb|ABB13322.1| phytochrome A [Hordeum vulgare subsp. vulgare]
          Length = 1130

 Score =  933 bits (2412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1108 (44%), Positives = 693/1108 (62%), Gaps = 68/1108 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVIS---PPEGVPE---EQITAYLSKIQRGG 91
            ++     DA L AEFE+S     SF+YS+ V +    P  + E   E++ AYL  IQRG 
Sbjct: 22   VLAQTTLDAELNAEFEES---SDSFDYSKLVEAQRDTPTVLQEGRSEKVIAYLQHIQRGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSG 148
            +IQ FGC+LA++E +F +I +SEN  EML   S    S D      IG + R+LFT    
Sbjct: 79   MIQSFGCLLALDEKSFNVIAFSENAPEMLTTVSHAVPSVDDPPRLDIGTNVRSLFTEQGA 138

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
             +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP    +   + AG
Sbjct: 139  TALHKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVNPTEFPATAAG 196

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AIS++QALPGG + LLC+TVV++V +LTGYDRVM Y FH+D+HGEV +EI
Sbjct: 197  ALQSYKLAAKAISKIQALPGGSMELLCNTVVKEVFELTGYDRVMAYKFHEDNHGEVFAEI 256

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             +  LEPYLG+H+PA DIPQAARFLF +N+VRMICD  A  + VI+ + L   + L  S+
Sbjct: 257  TKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDVRARTLKVIEDEALPFDISLCGSS 316

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIIN---------------SKDSMKLWGLVVCHHTS 373
            LR+ H CHLQYM NM SIASLVMAV++N                +    LWGLVVCHH S
Sbjct: 317  LRAAHSCHLQYMENMNSIASLVMAVVVNESEEDDEAESEQPAQQQKKKILWGLVVCHHES 376

Query: 374  PRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVT 432
            PRY+PFPLRYACEFL Q F++ +  E +V  QL EK+ILR Q +L DML ++A P +IV+
Sbjct: 377  PRYVPFPLRYACEFLAQVFAVHVNKEFEVQKQLREKSILRMQTILSDMLFKEASPLTIVS 436

Query: 433  QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
             +P+IMDL+KCDGAAL YG + W +G  PTESQ++ IA WL   H D TGLST+SL +AG
Sbjct: 437  GTPNIMDLIKCDGAALLYGDKVWRLGNAPTESQIRHIALWLSEVHMDSTGLSTESLHDAG 496

Query: 493  YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
            YPGA+ LG  VCG+A A+I S D LFWFRSHTA+E++WGGAK+ P  +D+  +MHPR SF
Sbjct: 497  YPGASALGDMVCGIAVAKINSNDILFWFRSHTAEEIRWGGAKNDPSDQDDSRRMHPRLSF 556

Query: 553  KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612
            KAFLEVVK +S  W   E++AIHSLQ+++R +  ++ +    K   + Q    K+ G+ E
Sbjct: 557  KAFLEVVKMKSLAWSDYEMDAIHSLQLILRGALDDVAKPT-GKASLDEQIGDLKLDGIAE 615

Query: 613  LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
            L +V  EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V E S
Sbjct: 616  LQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEESS 674

Query: 673  QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQ 732
               V+ ++  AL G+E+K V   ++    ++    V ++VNAC SRD  ++V GVCFV Q
Sbjct: 675  VPVVQRMLYLALQGKEEKEVRFDMKTHGPKRDDGPVILVVNACASRDLHDDVVGVCFVAQ 734

Query: 733  DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV 792
            D+T  K++MDKF R++GDY AI+ + NPLIPPIF +DE   CSEWNAAM K+TGW R EV
Sbjct: 735  DMTVHKLVMDKFTRVKGDYMAIVHNPNPLIPPIFGADEFGWCSEWNAAMTKLTGWHREEV 794

Query: 793  I---------------------------------GITGQGTENFPFGFFNRQGQFVEVAL 819
            +                                  + G+ TE  PFGFF+R G++ E  L
Sbjct: 795  LDKMLLGEVFDSSNASCLLKNKDAFVGLCVLINSALAGEETEKAPFGFFDRSGKYTECLL 854

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            + + R + +G + G FCF+ I   +LQ AL+ Q   +     ++K  +Y+R  + NPL+G
Sbjct: 855  SVNSRANEDGLITGVFCFIHIPSHELQQALQVQQASEQASLRRLKAFSYMRHAINNPLSG 914

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFLLG 937
            + +  K L+++ ++E Q + +  SD C  Q+  I+  +D   I E +  ++L+  EF+L 
Sbjct: 915  MLYSRKALKNTDLNEEQMRQIHVSDNCHHQLNKILADLDQDNIMENSSCLDLEMAEFVLQ 974

Query: 938  NILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPD 997
            +++ A VSQV++  + K + +  ++PE      + GD IRLQ +LSDFL   V+ +P   
Sbjct: 975  DVVVAAVSQVLIACQGKGIRISCNLPERFMKQLVYGDGIRLQQILSDFLSISVKFSPV-G 1033

Query: 998  GWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLS 1057
            G VEI        I +    + ++ R+ H G G+P+ L+  M+   N   + EGLGL +S
Sbjct: 1034 GSVEISAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEGLGLLVS 1093

Query: 1058 RKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            R LL +MNG VR++RE     F++  EL
Sbjct: 1094 RNLLRLMNGDVRHLREAGMSIFILTAEL 1121


>gi|77963956|gb|ABB13320.1| phytochrome A [Hordeum vulgare subsp. vulgare]
 gi|77963958|gb|ABB13321.1| phytochrome A [Hordeum vulgare subsp. vulgare]
          Length = 1130

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1101 (45%), Positives = 691/1101 (62%), Gaps = 68/1101 (6%)

Query: 45   DAGLLAEFEQSVASGKSFNYSRSVIS---PPEGVPE---EQITAYLSKIQRGGLIQPFGC 98
            DA L AEFE+S     SF+YS+ V +    P  + E   E++ AYL  IQRG +IQ FGC
Sbjct: 29   DAELNAEFEES---SDSFDYSKLVEAQRDTPTVLQEGRSEKVIAYLQHIQRGKMIQSFGC 85

Query: 99   MLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAKAA 155
            +LA++E +F +I +SEN  EML   S    S D      IG + R+LFT     +L KA 
Sbjct: 86   LLALDEKSFNLIAFSENAPEMLTTVSHAVPSVDDPPRLDIGTNVRSLFTEQGATALHKAL 145

Query: 156  ASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKL 215
               ++SLLNPILV   +    KPFYAI+HR    +V+D EP    +   + AGA+QS KL
Sbjct: 146  GFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVNPTEFPATAAGALQSYKL 203

Query: 216  AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP 275
            A  AIS++QALPGG + LLC+TVV++V +LTGYDRVM Y FH+D+HGEV +EI +  LEP
Sbjct: 204  AAKAISKIQALPGGSMELLCNTVVKEVFELTGYDRVMAYKFHEDNHGEVFAEITKPGLEP 263

Query: 276  YLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGC 335
            YLG+H+PA DIPQAARFLF +N+VRMICD  A  + VI+ + L   + L  S+LR+ H C
Sbjct: 264  YLGLHYPATDIPQAARFLFMKNKVRMICDVRARTLKVIEDEALPFDISLCGSSLRAAHSC 323

Query: 336  HLQYMTNMGSIASLVMAVIIN---------------SKDSMKLWGLVVCHHTSPRYIPFP 380
            HLQYM NM SIASLVMAV++N                +    LWGLVVCHH SPRY+PFP
Sbjct: 324  HLQYMENMNSIASLVMAVVVNESEEDDEAESEQPAQQQKKKILWGLVVCHHESPRYVPFP 383

Query: 381  LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVTQSPSIMD 439
            LRYACEFL Q F++ +  E +V  QL EK+ILR Q +L DML ++A P +IV+ +P+IMD
Sbjct: 384  LRYACEFLAQVFAVHVNKEFEVQKQLREKSILRMQTILSDMLFKEASPLTIVSGTPNIMD 443

Query: 440  LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
            L+KCDGAAL YG + W +G  PTESQ++ IA WL   H D TGLST+SL +AGYPGA+ L
Sbjct: 444  LIKCDGAALLYGDKVWRLGNAPTESQIRHIALWLSEVHMDSTGLSTESLHDAGYPGASAL 503

Query: 500  GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
            G  VCG+A A+I S D LFWFRSHTA+E++WGGAK+ P  +D+  +MHPR SFKAFLEVV
Sbjct: 504  GDMVCGIAVAKINSNDILFWFRSHTAEEIRWGGAKNDPSDQDDSRRMHPRLSFKAFLEVV 563

Query: 560  KNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACE 619
            K +S  W   E++AIHSLQ+++R +  ++ +    K   + Q    K+ G+ EL +V  E
Sbjct: 564  KMKSLAWSDYEMDAIHSLQLILRGALDDVAKPT-GKASLDEQIGDLKLDGIAELQAVTSE 622

Query: 620  MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679
            MVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V E S   V+ +
Sbjct: 623  MVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEESSVPVVQRM 681

Query: 680  ICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKV 739
            +  AL G+E+K V   ++    ++    V ++VNAC SRD  ++V GVCFV QD+T  K+
Sbjct: 682  LYLALQGKEEKEVRFDMKTHGPKRDDGPVILVVNACASRDLHDDVVGVCFVAQDMTVHKL 741

Query: 740  LMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------ 793
            +MDKF R++GDY AI+ + NPLIPPIF +DE   CSEWNAAM K+TGW R EV+      
Sbjct: 742  VMDKFTRVKGDYMAIVHNPNPLIPPIFGADEFGWCSEWNAAMTKLTGWHREEVLDKMLLG 801

Query: 794  ---------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTD 826
                                        + G+ TE  PFGFF+R G++ E  L+ + R +
Sbjct: 802  EVFDSSNASCLLKNKDAFVGLCVLINSALAGEETEKAPFGFFDRSGKYTECLLSVNSRAN 861

Query: 827  AEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKL 886
             +G + G FCF+ I   +LQ AL+ Q   +     ++K  +Y+R  + NPL+G+ +  K 
Sbjct: 862  EDGLITGVFCFIHIPSHELQQALQVQQASEQASLRRLKAFSYMRHAINNPLSGMLYSRKA 921

Query: 887  LESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFLLGNILDAVV 944
            L+++ ++E Q + +  SD C  Q+  I+  +D   I E +  ++L+  EF+L +++ A V
Sbjct: 922  LKNTDLNEEQMRQIHVSDNCHHQLNKILADLDQDNIMENSSCLDLEMAEFVLQDVVVAAV 981

Query: 945  SQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV 1004
            SQV++  + K + +  ++PE      + GD +RLQ +LSDFL   V+ +P   G VEI  
Sbjct: 982  SQVLIACQGKGIRISCNLPERFMKQLVYGDGVRLQQILSDFLSISVKFSPV-GGSVEISA 1040

Query: 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMM 1064
                  I +    + ++ R+ H G G+P+ L+  M+   N   + EGLGL +SR LL +M
Sbjct: 1041 QATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEGLGLLVSRNLLRLM 1100

Query: 1065 NGRVRYVRENSKCYFVIDLEL 1085
            NG VR++RE     F++  EL
Sbjct: 1101 NGDVRHLREAGMSIFILTAEL 1121


>gi|406685449|gb|AFS51165.1| phytochrome P, partial [Agathis robusta]
          Length = 655

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/660 (69%), Positives = 531/660 (80%), Gaps = 33/660 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR-------SRSEDFELNG- 133
           AYLS++QRGG IQPFGCMLAVEE TFRII YSEN LEMLDL         R E    +G 
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFRIIAYSENALEMLDLMPQSVPNMDRDEAMGSHGG 60

Query: 134 ----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVG 189
                IG D R LFTP S  +L KAA ++EISL+NPI VHS  ++  KPFYAI+HRIDVG
Sbjct: 61  RRVITIGTDVRALFTPESARALEKAAMAQEISLMNPIGVHS--QNTNKPFYAIVHRIDVG 118

Query: 190 IVIDLEPSKSGDPALSLAG-----AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQK 244
           +VIDLEP ++G     +AG     +VQSQKLAV AISRLQ+   GDIG+LCDTVVEDV++
Sbjct: 119 MVIDLEPVRTGSGGGGVAGLAAAGSVQSQKLAVRAISRLQS--AGDIGVLCDTVVEDVRE 176

Query: 245 LTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICD 304
           LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICD
Sbjct: 177 LTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICD 236

Query: 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---- 360
           C A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +     
Sbjct: 237 CRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEGGG 296

Query: 361 -------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILR 413
                  MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQVA QL EK+ILR
Sbjct: 297 SGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQVAAQLTEKHILR 356

Query: 414 TQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWL 473
           TQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WL
Sbjct: 357 TQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWL 416

Query: 474 LNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGA 533
           L  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGA
Sbjct: 417 LEYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGA 476

Query: 534 KHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEND 593
           KHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ N 
Sbjct: 477 KHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSN- 535

Query: 594 SKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGL 653
           +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVAELTGL
Sbjct: 536 TKTMVHGRLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVAELTGL 595

Query: 654 PASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
           P  EAMGKSL+ +++  ES   V+ ++CRAL GEE+KNVE+KLR F  QKQ   +Y++VN
Sbjct: 596 PVGEAMGKSLVHDLIFHESADTVDKMLCRALRGEEEKNVEIKLRTFGPQKQKKAIYLVVN 655


>gi|406685307|gb|AFS51094.1| phytochrome P, partial [Torreya taxifolia]
          Length = 675

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/679 (67%), Positives = 534/679 (78%), Gaps = 38/679 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLD----------LRSRSEDFEL 131
           AYLS++QRGG IQPFGCMLAVEE +F+II YSEN LEMLD          +  R  D + 
Sbjct: 1   AYLSRMQRGGSIQPFGCMLAVEETSFKIIAYSENALEMLDVMPHFQSVPNMEGRDGDSDG 60

Query: 132 NGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIV 191
              IG D R LFTP SG +L +AA ++EISL NPI + SNS    KPFYAI+HRIDVGIV
Sbjct: 61  FLTIGSDVRRLFTPSSGRNLERAAMAQEISLTNPIAMESNS---GKPFYAIVHRIDVGIV 117

Query: 192 IDLEPSKSGDPALSLAGA--------VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQ 243
           IDLEP + GD A  ++ A        V SQ+LAV A SRLQ++P GDIGLLCDTVVE+V+
Sbjct: 118 IDLEPVRRGDAAALVSWAGGGGGGGTVPSQRLAVRATSRLQSVPSGDIGLLCDTVVEEVR 177

Query: 244 KLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMIC 303
           +LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMIC
Sbjct: 178 ELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMIC 237

Query: 304 DCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---- 359
           DC A PV V Q++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N       
Sbjct: 238 DCRATPVKVKQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIVNGNGIDED 297

Query: 360 ------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLA 407
                       S+KLWGLVVCHHTSPR + FPLR ACEFL+Q F LQ+ MELQ+A QL 
Sbjct: 298 GVSGSGSGSGRSSIKLWGLVVCHHTSPRAVSFPLRSACEFLMQTFGLQINMELQLAAQLI 357

Query: 408 EKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLK 467
           E +ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  WL+GVTPTE+QLK
Sbjct: 358 ENSILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMFWLLGVTPTEAQLK 417

Query: 468 DIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKE 527
           DIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE
Sbjct: 418 DIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKE 477

Query: 528 VKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQE 587
           +KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RSFPWE  E++AIHSLQ+++R SFQ+
Sbjct: 478 MKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSFPWENVEMDAIHSLQLILRGSFQD 537

Query: 588 MEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
           +++   +K   + + N  K+QG+DELSSVA EMVRLIETATAPI  VDSSG +NGWNAKV
Sbjct: 538 IDDSG-TKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSSGIVNGWNAKV 596

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
            ELTGLP  EAMGKSL+ ++V EES   VE ++  AL GEE+KNVE+KLR F  QKQ  V
Sbjct: 597 GELTGLPVGEAMGKSLVHDLVFEESIETVEKMLYHALRGEEEKNVEIKLRTFGPQKQKKV 656

Query: 708 VYILVNACTSRDYKNNVKG 726
           +Y++VNAC+SRDY + + G
Sbjct: 657 IYLVVNACSSRDYTDKIVG 675


>gi|327241174|gb|AEA40431.1| phytochrome A [Triticum monococcum]
          Length = 1130

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1108 (44%), Positives = 689/1108 (62%), Gaps = 68/1108 (6%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVIS---PPEGVPE---EQITAYLSKIQRGG 91
            ++     DA L AEFE+S     SF+YS+ V +    P  + E   E++ AYL  IQRG 
Sbjct: 22   VLAQTTLDAELNAEFEES---SDSFDYSKLVEAQRDTPTVLQEGRSEKVIAYLQHIQRGK 78

Query: 92   LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSG 148
            +IQ FGC+LA++E +F +I +SEN  EML   S    S D      IG + R+LFT    
Sbjct: 79   MIQSFGCLLALDEKSFNVIAFSENAPEMLTTVSHAVPSVDDPPRLDIGTNVRSLFTDQGA 138

Query: 149  ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
             +L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP    +   + AG
Sbjct: 139  TALHKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVNPTEFPATAAG 196

Query: 209  AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
            A+QS KLA  AIS++QALPGG + LLC+TVV++V +LTGYDRVM Y FH+D+HGEV +EI
Sbjct: 197  ALQSYKLAAKAISKIQALPGGSMELLCNTVVKEVFELTGYDRVMAYKFHEDNHGEVFAEI 256

Query: 269  RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
             +  LEPYLG+H+PA DIPQAARFLF +N+VRMICD  A  + VI+ + L   + L  S 
Sbjct: 257  TKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDVRARSLKVIEDEALPFDISLCGSA 316

Query: 329  LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMK---------------LWGLVVCHHTS 373
            LR+ H CHLQYM NM SIASLVMAV++N  +                  LWGL+VCHH S
Sbjct: 317  LRAAHSCHLQYMENMSSIASLVMAVVVNENEEDDEVGSEQPAQQQQKKILWGLIVCHHES 376

Query: 374  PRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVT 432
            PRY+PFPLRYACEFL Q F++ +  E +V  QL EK+ILR Q +L DML ++A P +IV+
Sbjct: 377  PRYVPFPLRYACEFLAQVFAVHVNKEFEVQKQLREKSILRMQTILSDMLFKEASPLTIVS 436

Query: 433  QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
             +P+IMDL+KCDGAAL YGG+ W +G  PT+SQ+ D+A WL   H D TGLST+SL +AG
Sbjct: 437  GAPNIMDLIKCDGAALLYGGKVWRLGTAPTDSQIHDLALWLSEVHMDSTGLSTESLHDAG 496

Query: 493  YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
            YPGA+ LG  VCGMA A+I S D LFWFRS TAKE++WGGAK+ P   D+  +MHPR SF
Sbjct: 497  YPGASALGDTVCGMAVAKINSSDILFWFRSPTAKEIRWGGAKNDPSDMDDSRRMHPRLSF 556

Query: 553  KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612
            KAFLEVVK +S  W  SE++AIHSLQ+++R +   + +    K   + Q    K+ G+ E
Sbjct: 557  KAFLEVVKMKSLAWTDSEMDAIHSLQLILRGAVDGVVKPT-GKASLDEQIGDLKLDGLAE 615

Query: 613  LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
            L +V  EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V E S
Sbjct: 616  LQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEESS 674

Query: 673  QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQ 732
               V+ ++  AL G+E+K V  +++    ++    V ++VNAC SRD  ++V GVCFV Q
Sbjct: 675  VSVVQRMLYLALQGKEEKEVRFEVKTHGPKRDDGPVILVVNACASRDLHDDVVGVCFVAQ 734

Query: 733  DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV 792
            D+T  K++MDKF R++GDY AII + NPLIPPIF +DE   C EWNAAM K+TGW R EV
Sbjct: 735  DMTVHKLVMDKFTRVEGDYMAIIHNPNPLIPPIFGADEFGWCCEWNAAMTKLTGWHREEV 794

Query: 793  I---------------------------------GITGQGTENFPFGFFNRQGQFVEVAL 819
            +                                  + G+ TE  PFGFF+R G++ E  L
Sbjct: 795  LDKMLLGEVFDSRNASWLLKNKDAFGRLCVVITSALAGEETEKLPFGFFDRSGKYNECLL 854

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            + +RR +  G + G FCF+ I   +LQ AL+ Q   +     ++K  +Y+R  + NPL+G
Sbjct: 855  SVNRRQNEGGLITGVFCFIHIPSHELQQALQVQQALEQKSLKRLKAFSYMRHAINNPLSG 914

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFLLG 937
            + +  K L+++ ++E Q + +  +D C  Q+  I+  +D     E +  ++L+  EF+L 
Sbjct: 915  MLYSRKALKNTHLNEEQMRQIHVADNCHHQLNKILADLDQHNTMEKSSCLDLEMAEFVLQ 974

Query: 938  NILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPD 997
            +++ A VSQV++  + K + +  ++PE      + GD +RLQ +LSDFL   V+ +P   
Sbjct: 975  DVVVAAVSQVLIACQGKGIRVSCNLPERFMKQLVYGDGVRLQQILSDFLSISVKFSPVGS 1034

Query: 998  GWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLS 1057
              VEI        I +    + ++ R+ H G G+P+ L+  M+   +   + EGLGL +S
Sbjct: 1035 S-VEISAKATKNSIGENLHLIDLELRIKHQGLGVPAELMAQMFEEDDPQQSEEGLGLLVS 1093

Query: 1058 RKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            R LL +MNG +R++RE     F++  EL
Sbjct: 1094 RNLLRLMNGDIRHLREAGVSIFILTAEL 1121


>gi|406685487|gb|AFS51184.1| phytochrome P, partial [Acmopyle pancheri]
          Length = 638

 Score =  931 bits (2405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/641 (71%), Positives = 522/641 (81%), Gaps = 20/641 (3%)

Query: 90  GGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------LIGIDARTL 142
           GG IQPFGCMLAVEE  F+II YS+N LEMLD   +S    EL         IG D RTL
Sbjct: 1   GGTIQPFGCMLAVEETNFKIIAYSQNALEMLDPMPQSVPTMELGKHGGSILTIGTDVRTL 60

Query: 143 FTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDP 202
           FTP S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVGIVIDLEP ++GD 
Sbjct: 61  FTPSSARALEKAAMAPDISLMNPIWVHSQYTG--KPFNAIVHRIDVGIVIDLEPLRTGDA 118

Query: 203 ALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHG 262
           A+S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HG
Sbjct: 119 AMSTAGAVQSQKLAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMVYKFHEDEHG 178

Query: 263 EVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPL 322
           EVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMI DC A PV VIQS+EL+QPL
Sbjct: 179 EVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMIFDCSATPVKVIQSEELRQPL 238

Query: 323 CLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKLWGLVVCHHT 372
           CLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKLWGLVVCHHT
Sbjct: 239 CLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGLSGRSSMKLWGLVVCHHT 298

Query: 373 SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVT 432
           SPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLRDAP  IVT
Sbjct: 299 SPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDAPIGIVT 358

Query: 433 QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
           QSPSIMDLVKCDGAALYYG   W +GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AG
Sbjct: 359 QSPSIMDLVKCDGAALYYGCTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGLSTDSLADAG 418

Query: 493 YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
           YPGAA LG AVCGMA ARITSKD+LFW+RSHTAKE+KWGGAKHHP+ KD+G +MHPRSSF
Sbjct: 419 YPGAASLGDAVCGMAAARITSKDYLFWYRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSF 478

Query: 553 KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612
           KAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+QG+DE
Sbjct: 479 KAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI-DDSDTKTMVHARLNDLKLQGIDE 537

Query: 613 LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
           LSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL+ ++V EES
Sbjct: 538 LSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSLVHDLVLEES 597

Query: 673 QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
              VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VN
Sbjct: 598 AECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVN 638


>gi|406685265|gb|AFS51073.1| phytochrome P, partial [Amentotaxus poilanei]
          Length = 674

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/678 (67%), Positives = 534/678 (78%), Gaps = 37/678 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLD----------LRSRSEDFEL 131
           AYLS++QRGG IQPFGCMLAVEE +F+II YSEN LEMLD          +  R  D + 
Sbjct: 1   AYLSRMQRGGSIQPFGCMLAVEETSFKIIAYSENALEMLDVMPHSHSVSNMEGRGGDSDG 60

Query: 132 NGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIV 191
              IG D R LFTP SG +L +AA ++EISL NPI + SNS    KPFYAI+HRIDVGIV
Sbjct: 61  FLTIGSDMRRLFTPSSGRNLERAAMAQEISLTNPIAMESNS---GKPFYAIVHRIDVGIV 117

Query: 192 IDLEPSKSGDPALSLAGA-------VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQK 244
           I LEP + GD A  ++ A       V SQ+LAV A SRLQ++P GDIGLLCDTVVE+V++
Sbjct: 118 IGLEPVRRGDAAALVSWAGGGGGGTVPSQRLAVRATSRLQSVPSGDIGLLCDTVVEEVRE 177

Query: 245 LTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICD 304
           LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICD
Sbjct: 178 LTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICD 237

Query: 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----- 359
           C A PV V Q++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N        
Sbjct: 238 CRATPVKVKQAEELKQPLCLVGSTLRAPHGCHSQYMANMGSIASLVMAVIVNGNGIDEDG 297

Query: 360 -----------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                      S+KLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL E
Sbjct: 298 VSGSGSGSGRSSIKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQLIE 357

Query: 409 KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            +ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  WL+GVTPTE+QLKD
Sbjct: 358 NSILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMFWLLGVTPTEAQLKD 417

Query: 469 IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
           IA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT KDFLFWFRSHTAKE+
Sbjct: 418 IADWLLECHGDSTGLSTDSLADAGYPSAASLGDAVCGMAAARITLKDFLFWFRSHTAKEM 477

Query: 529 KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
           KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RSFPWE  E++AIHSLQ+++R SFQ++
Sbjct: 478 KWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSFPWENVEMDAIHSLQLILRGSFQDI 537

Query: 589 EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            +++D+K   + + N  K+QG+DELSSVA EMVRLIETATAPI  VDSSG +NGWNAKV 
Sbjct: 538 -DDSDTKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSSGIVNGWNAKVG 596

Query: 649 ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
           ELTGLP  EAMGKSL+ ++V EES   VE ++  AL GEE+KNVE+KLR F  QKQ  V+
Sbjct: 597 ELTGLPVGEAMGKSLVHDLVFEESIETVEKMLYHALRGEEEKNVEIKLRTFGPQKQKKVI 656

Query: 709 YILVNACTSRDYKNNVKG 726
           Y+++NAC+SRDY + + G
Sbjct: 657 YLVINACSSRDYTDKIVG 674


>gi|406685263|gb|AFS51072.1| phytochrome P, partial [Amentotaxus formosana]
          Length = 676

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/680 (67%), Positives = 535/680 (78%), Gaps = 39/680 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLD----------LRSRSEDFEL 131
           AYLS++QRGG IQPFGCMLAVEE +F+II YSEN LEMLD          +  R  D + 
Sbjct: 1   AYLSRMQRGGSIQPFGCMLAVEETSFKIIAYSENALEMLDVMPHSHSVSNMEGRGGDSDG 60

Query: 132 NGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIV 191
              IG D R LFTP SG +L +AA ++EISL NPI + SNS    KPFYAI+HRIDVG+V
Sbjct: 61  FLTIGSDMRRLFTPSSGRNLERAAMAQEISLTNPIAMESNS---GKPFYAIVHRIDVGMV 117

Query: 192 IDLEPSKSGDPALSLAGA-------VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQK 244
           IDLEP + GD A  ++ A       V SQ+LAV A SRLQ++P GDIGLLCDTVVE+V++
Sbjct: 118 IDLEPVRRGDAAALVSWAGGGGGGTVPSQRLAVRATSRLQSVPSGDIGLLCDTVVEEVRE 177

Query: 245 LTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICD 304
           LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICD
Sbjct: 178 LTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICD 237

Query: 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----- 359
           C A PV V Q++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N        
Sbjct: 238 CCATPVKVKQAEELKQPLCLVGSTLRAPHGCHSQYMANMGSIASLVMAVIVNGNGIDEDG 297

Query: 360 -------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQL 406
                        S+KLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL
Sbjct: 298 VSGSESGSGSGRSSIKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQL 357

Query: 407 AEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQL 466
            E +ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  WL+GVTPTE+QL
Sbjct: 358 IENSILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMFWLLGVTPTEAQL 417

Query: 467 KDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAK 526
           KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT KDFLFWFRSHTAK
Sbjct: 418 KDIADWLLECHGDSTGLSTDSLADAGYPSAASLGDAVCGMAAARITLKDFLFWFRSHTAK 477

Query: 527 EVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQ 586
           E+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RSFPWE  E++AIHSLQ+++R SFQ
Sbjct: 478 EMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSFPWENVEMDAIHSLQLILRGSFQ 537

Query: 587 EMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAK 646
           ++ +++D+K   + + N  K+QG+DELSSVA EMVRLIETATAPI  VDSSG +NGWNAK
Sbjct: 538 DI-DDSDTKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSSGIVNGWNAK 596

Query: 647 VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706
           V ELTGLP  EAMGKSL+ ++V EES   VE ++  AL GEE+KNVE+KLR F  QKQ  
Sbjct: 597 VGELTGLPVGEAMGKSLVHDLVFEESIETVEKMLYHALRGEEEKNVEIKLRTFGPQKQKK 656

Query: 707 VVYILVNACTSRDYKNNVKG 726
           V+Y+++NAC+SRDY + + G
Sbjct: 657 VIYLVINACSSRDYTDKIVG 676


>gi|406685267|gb|AFS51074.1| phytochrome P, partial [Amentotaxus yunnanensis]
          Length = 674

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/678 (67%), Positives = 534/678 (78%), Gaps = 37/678 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLD----------LRSRSEDFEL 131
           AYLS++QRGG IQPFGCMLAVEE +F+II YSEN LEMLD          +  R  D + 
Sbjct: 1   AYLSRMQRGGSIQPFGCMLAVEETSFKIIAYSENALEMLDVMPHSHSVSNMEGRGGDSDG 60

Query: 132 NGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIV 191
              IG D R LFTP SG +L +AA ++EISL NPI + SNS    KPFYAI+HRIDVGIV
Sbjct: 61  FLTIGSDMRRLFTPSSGRNLERAAMAQEISLTNPIAMESNS---GKPFYAIVHRIDVGIV 117

Query: 192 IDLEPSKSGDPALSLAGA-------VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQK 244
           IDLEP + GD A  ++ A       V SQ+LAV A SRLQ++P GDIGLLCDTVVE+V++
Sbjct: 118 IDLEPVRRGDAAALVSWAGGGGGGTVPSQRLAVRATSRLQSVPSGDIGLLCDTVVEEVRE 177

Query: 245 LTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICD 304
           LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICD
Sbjct: 178 LTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICD 237

Query: 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----- 359
           C A PV V Q++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N        
Sbjct: 238 CRATPVKVKQAEELKQPLCLVGSTLRAPHGCHSQYMANMGSIASLVMAVIVNGNGIDEDG 297

Query: 360 -----------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                      S+KLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL E
Sbjct: 298 VSGSGSGSGRSSIKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQLIE 357

Query: 409 KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
            +ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY GG  WL+GVTPTE+QLKD
Sbjct: 358 NSILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYCGGMFWLLGVTPTEAQLKD 417

Query: 469 IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
           IA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT KDFLFWFRSHTAKE+
Sbjct: 418 IADWLLECHGDSTGLSTDSLADAGYPSAASLGDAVCGMAAARITLKDFLFWFRSHTAKEM 477

Query: 529 KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
           KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RSFPWE  E++AIHSLQ+++R SFQ++
Sbjct: 478 KWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSFPWENVEMDAIHSLQLILRGSFQDI 537

Query: 589 EEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            +++D+K   + + N  K+QG+DELSSVA EMVRLIETATAPI  VDSSG +NGWNAKV 
Sbjct: 538 -DDSDTKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSSGIVNGWNAKVG 596

Query: 649 ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
           ELTGLP  EAMGKSL+ ++V EES   VE ++  AL GEE+KNVE+KLR F  QKQ  V+
Sbjct: 597 ELTGLPVGEAMGKSLVHDLVFEESIETVEKMLYHALRGEEEKNVEIKLRTFGPQKQKKVI 656

Query: 709 YILVNACTSRDYKNNVKG 726
           Y+++NAC+SRDY + + G
Sbjct: 657 YLVINACSSRDYTDKIVG 674


>gi|218683873|gb|ACL00891.1| phytochrome B [Cochlearia acaulis]
          Length = 651

 Score =  927 bits (2396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/624 (69%), Positives = 515/624 (82%), Gaps = 11/624 (1%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDT+VE 
Sbjct: 1   ILHRIDVGVVIDLEPARTDDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTIVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E RR DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESRRQDLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN+    
Sbjct: 121 IVDCHATPVLVVQDDRLAQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINANEDD 180

Query: 358 -------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKN 410
                  ++SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK 
Sbjct: 181 GSNVPGGRNSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKR 240

Query: 411 ILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470
           +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+ESQ+KD+ 
Sbjct: 241 VLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSESQIKDVV 300

Query: 471 WWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKW 530
            WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KW
Sbjct: 301 EWLLENHADSTGLSTDSLGDAGYPGAASLGDAVCGMAVACITKRDFLFWFRSHTAKEIKW 360

Query: 531 GGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE 590
           GGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E 
Sbjct: 361 GGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEA 420

Query: 591 ENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAEL 650
                      ++ +  QG+DEL +VA EMVRLIETAT PIF VDS G INGWNAK+AEL
Sbjct: 421 AAADGAVQPCNKDMAGEQGIDELGAVAREMVRLIETATVPIFAVDSGGCINGWNAKIAEL 480

Query: 651 TGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYI 710
           TGL   EAMGKSLI +++++E+Q  V+ LI  AL G+EDKNVE+KL+ F  + Q   V++
Sbjct: 481 TGLSVEEAMGKSLISDLIYKENQETVDKLISSALRGDEDKNVEVKLKTFSSELQGKAVFV 540

Query: 711 LVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDE 770
           +VNAC+S+DY NN+ GVCFVGQD+T++K++MDKFI +QGDY+AI+ S NPLIPPIFA+DE
Sbjct: 541 VVNACSSKDYLNNIVGVCFVGQDVTNQKIVMDKFINIQGDYKAIVHSPNPLIPPIFAADE 600

Query: 771 NACCSEWNAAMEKVTGWMRHEVIG 794
           N CC EWN AMEK+TGW R EVIG
Sbjct: 601 NTCCLEWNTAMEKLTGWSRGEVIG 624


>gi|327342194|gb|AEA50884.1| phyB1 [Populus tremula]
          Length = 695

 Score =  926 bits (2394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/657 (68%), Positives = 531/657 (80%), Gaps = 14/657 (2%)

Query: 39  IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
           I  Y  DA L A FEQS  SGKSF+YS+SV +  + VPEEQITAYLSKIQRGG IQPFGC
Sbjct: 41  IAQYTVDAQLHAVFEQSGGSGKSFDYSQSVRTTSQSVPEEQITAYLSKIQRGGHIQPFGC 100

Query: 99  MLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGLI--GIDARTLFTPPSGASLAKAA 155
           M+AV+E +FR+I YSEN  EML    +S    +   ++  G D RTLF P S A L KA 
Sbjct: 101 MIAVDEGSFRVIAYSENAKEMLGFTPQSVPSLDKQEILSDGTDVRTLFRPSSSAMLEKAF 160

Query: 156 ASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKL 215
            +REI+LLNPI +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKL
Sbjct: 161 GAREITLLNPIWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKL 218

Query: 216 AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP 275
           AV +IS+LQ+LPGGDI LLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+E +R+DLEP
Sbjct: 219 AVRSISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAENKRADLEP 278

Query: 276 YLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGC 335
           Y+G+H+P+ DIPQA+RFLFKQNRVRMI DCHA PV VIQ + L QPLCLV STLR+PHGC
Sbjct: 279 YIGLHYPSTDIPQASRFLFKQNRVRMIVDCHATPVRVIQDEALMQPLCLVGSTLRAPHGC 338

Query: 336 HLQYMTNMGSIASLVMAVIINS--------KDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           H QYM NMGSIAS+ MAVIIN         ++S +LWGLVVCHHTS R IPFPLRYACEF
Sbjct: 339 HAQYMANMGSIASMAMAVIINGNEEEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEF 398

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL MELQ+A QL+EK++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA
Sbjct: 399 LMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAA 458

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYY G+ +  GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA
Sbjct: 459 LYYQGQYYPSGVTPTEAQIKDIVEWLLALHGDSTGLSTDSLADAGYPGAASLGNAVCGMA 518

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS  WE
Sbjct: 519 VAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLLWE 578

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
            +E++AIHSLQ+++RDSF++ E  N SK    TQ   +++QG+DELSSVA EMVRLIETA
Sbjct: 579 NAEMDAIHSLQLILRDSFRDAEATN-SKAVVRTQLEDTELQGMDELSSVAREMVRLIETA 637

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           TAPIF VD  G INGWNAKVAELTGL    AMGKSL+ ++V++E +  V+ L+ RAL
Sbjct: 638 TAPIFAVDVDGCINGWNAKVAELTGLSVERAMGKSLVHDLVYKEYEETVDKLLHRAL 694


>gi|406685441|gb|AFS51161.1| phytochrome P, partial [Agathis macrophylla]
          Length = 655

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/660 (69%), Positives = 528/660 (80%), Gaps = 33/660 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR-------SRSEDFELNG- 133
           AYLS++QRGG IQPFGCMLAVEE TFR+I YSEN LEMLDL         R E    +G 
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFRVIAYSENALEMLDLMPQSVPNMDREEAMGSHGG 60

Query: 134 ----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVG 189
                IG D R LFTP S  +L KAA ++EISL+NPI VHS  ++  KPFYAI+HRIDVG
Sbjct: 61  RRVITIGTDVRALFTPESARALEKAAMAQEISLMNPIGVHS--QNTNKPFYAIVHRIDVG 118

Query: 190 IVIDLEPSKSGDPALSLAG-----AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQK 244
           +VIDLEP ++G     + G     +VQSQKLAV AISRLQ+   GDIG+LCDTVVEDV++
Sbjct: 119 MVIDLEPVRTGSGGGGVGGLAAAGSVQSQKLAVRAISRLQS--AGDIGVLCDTVVEDVRE 176

Query: 245 LTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICD 304
           LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICD
Sbjct: 177 LTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICD 236

Query: 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---- 360
           C A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +     
Sbjct: 237 CRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEGGG 296

Query: 361 -------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILR 413
                  MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQVA QL EK+ILR
Sbjct: 297 SGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQVAAQLTEKHILR 356

Query: 414 TQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWL 473
           TQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WL
Sbjct: 357 TQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWL 416

Query: 474 LNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGA 533
           L  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFW RSHTAKE+KWGGA
Sbjct: 417 LEYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWLRSHTAKEMKWGGA 476

Query: 534 KHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEND 593
           KHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ N 
Sbjct: 477 KHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSN- 535

Query: 594 SKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGL 653
           +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVAELTGL
Sbjct: 536 TKTMVHGRLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVAELTGL 595

Query: 654 PASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
           P  EAMGKSL+ +++  ES   V+ ++C AL GEE+KN+E+KLR F  QKQ   +Y++VN
Sbjct: 596 PVGEAMGKSLVHDLIFHESADTVDKMLCHALRGEEEKNIEIKLRTFGPQKQKRAIYLVVN 655


>gi|218683879|gb|ACL00894.1| phytochrome B [Lepidium alyssoides]
          Length = 654

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/627 (69%), Positives = 513/627 (81%), Gaps = 14/627 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFL KQNR+RM
Sbjct: 61  VRNLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLIKQNRIRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN     
Sbjct: 121 IVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGIEED 180

Query: 358 -------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKN 410
                  K+SM+LWGLVVCHHTSPR IPFPLRYACEFL+QAF LQL MELQ+A+Q+AEK 
Sbjct: 181 GGNVAGGKNSMRLWGLVVCHHTSPRCIPFPLRYACEFLMQAFGLQLNMELQLALQMAEKR 240

Query: 411 ILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470
           +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y GR + +GV PTE Q+KDI 
Sbjct: 241 VLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGRYYPLGVAPTEVQIKDIV 300

Query: 471 WWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKW 530
            WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFW RSHTAKE+KW
Sbjct: 301 EWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITERDFLFWLRSHTAKEIKW 360

Query: 531 GGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE 590
           GGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ E 
Sbjct: 361 GGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKDSEA 420

Query: 591 ENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
             +SK      Q    M   QGVDEL +VA EMVRLIETAT PIF VD+ G INGWNAK+
Sbjct: 421 AINSKTADGAVQPFRDMTGEQGVDELGAVAREMVRLIETATVPIFAVDAGGYINGWNAKI 480

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
           AELTGL   EAMGKSL+ ++++++++  V+ LI RAL GEEDKNVE+KL+ F  + Q   
Sbjct: 481 AELTGLSVEEAMGKSLVSDLIYKQNEETVDKLISRALRGEEDKNVEVKLKTFSPELQGRA 540

Query: 708 VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFA 767
           V+++VNAC+S+DY NN+ GVCFVGQDIT +K+++DKFI +QGDY+AI+ S NPLIPPIFA
Sbjct: 541 VFVVVNACSSKDYLNNIVGVCFVGQDITGQKIVVDKFINIQGDYKAIVHSPNPLIPPIFA 600

Query: 768 SDENACCSEWNAAMEKVTGWMRHEVIG 794
           +DEN CC EWN AMEK++GW R EVIG
Sbjct: 601 ADENTCCLEWNTAMEKLSGWSRSEVIG 627


>gi|406685443|gb|AFS51162.1| phytochrome P, partial [Agathis montana de Laub. 1969]
          Length = 659

 Score =  926 bits (2392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/664 (69%), Positives = 530/664 (79%), Gaps = 37/664 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR-------SRSEDFELNG- 133
           AYLS++QRGG IQPFGCMLAVEE TFRII YSEN LEMLDL         R E    +G 
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFRIIAYSENALEMLDLMPQSVPNMDRDEAMGSHGG 60

Query: 134 ----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVG 189
                IG+D R LFTP S  +L KAA ++EISL+NPI VHS  ++  KPFYAI+HRIDVG
Sbjct: 61  RRVITIGMDVRALFTPESARALEKAAMAQEISLMNPIGVHS--QNTNKPFYAIVHRIDVG 118

Query: 190 IVIDLEPSKSGDPALSLAG-----AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQK 244
           +VIDLEP ++G     +AG     +VQSQKLAV AISRLQ+   GDIG+LCDTVVEDV++
Sbjct: 119 MVIDLEPVRTGSGGGGVAGLAAAGSVQSQKLAVRAISRLQS--AGDIGVLCDTVVEDVRE 176

Query: 245 LTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICD 304
           LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICD
Sbjct: 177 LTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICD 236

Query: 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---- 360
           C A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +     
Sbjct: 237 CRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDQGGG 296

Query: 361 -----------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEK 409
                      MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQVA QL EK
Sbjct: 297 SGGRSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQVAAQLTEK 356

Query: 410 NILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDI 469
           +ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDI
Sbjct: 357 HILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDI 416

Query: 470 AWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVK 529
           A WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+K
Sbjct: 417 ADWLLEYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMK 476

Query: 530 WGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME 589
           WGGAKHHP+ KD+  +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ+++
Sbjct: 477 WGGAKHHPDDKDDARRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDID 536

Query: 590 EENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAE 649
           + N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVAE
Sbjct: 537 DSN-TKTMVHGRLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVAE 595

Query: 650 LTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVY 709
           LTGLP  EAMGKSL+ +++  ES   V+ ++C AL GEE+KNVE+KLR F  QKQ   +Y
Sbjct: 596 LTGLPVGEAMGKSLVHDLIFHESADTVDKMLCHALRGEEEKNVEIKLRTFGPQKQKKAIY 655

Query: 710 ILVN 713
           ++VN
Sbjct: 656 LVVN 659


>gi|406685451|gb|AFS51166.1| phytochrome P, partial [Agathis silbae]
          Length = 655

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/660 (69%), Positives = 527/660 (79%), Gaps = 33/660 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR-------SRSEDFELNG- 133
           AYLS++QRGG IQPFGCMLAVEE TFRII YSEN LEMLDL         R E    +G 
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFRIIAYSENALEMLDLMPQSVPNMDRDEAMGSHGG 60

Query: 134 ----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVG 189
                IG D R LFTP S  +L KAA ++EISL+NPI VHS  +   KPFYAI+HRIDVG
Sbjct: 61  RRVITIGTDVRALFTPESARALEKAAMAQEISLMNPIGVHS--QKTNKPFYAIVHRIDVG 118

Query: 190 IVIDLEPSKSGDPALSLAG-----AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQK 244
           +VIDLEP ++G     + G     +VQSQKLAV AISRLQ+   GDIG+LCDTVVEDV++
Sbjct: 119 MVIDLEPVRTGSGGGGVGGLAAAGSVQSQKLAVRAISRLQS--AGDIGVLCDTVVEDVRE 176

Query: 245 LTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICD 304
           LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICD
Sbjct: 177 LTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICD 236

Query: 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---- 360
           C A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +     
Sbjct: 237 CRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEGGG 296

Query: 361 -------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILR 413
                  MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MEL+VA QL EK+ILR
Sbjct: 297 SGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELRVAAQLTEKHILR 356

Query: 414 TQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWL 473
           TQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WL
Sbjct: 357 TQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWL 416

Query: 474 LNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGA 533
           L  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFW RSHTAKE+KWGGA
Sbjct: 417 LEYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWLRSHTAKEMKWGGA 476

Query: 534 KHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEND 593
           KHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ N 
Sbjct: 477 KHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSN- 535

Query: 594 SKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGL 653
           +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVAELTGL
Sbjct: 536 TKTMVHGRLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVAELTGL 595

Query: 654 PASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
           P  EAMGKSL+ +++  ES   V+ ++C AL GEE+KN+E+KLR F  QKQ   +Y++VN
Sbjct: 596 PVGEAMGKSLVHDLIFHESADTVDKMLCHALRGEEEKNIEIKLRTFGPQKQKKAIYLVVN 655


>gi|406685439|gb|AFS51160.1| phytochrome P, partial [Agathis lanceolata]
          Length = 659

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/664 (69%), Positives = 529/664 (79%), Gaps = 37/664 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR-------SRSEDFELNG- 133
           AYLS++QRGG IQPFGCMLAVEE TFRII YSEN LEMLDL         R E    +G 
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFRIIAYSENALEMLDLMPQSVPNMDRDEAMGSHGR 60

Query: 134 ----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVG 189
                IG+D R LFTP S  +L KAA ++EISL+NPI VHS  ++  KPFYAI+HRIDVG
Sbjct: 61  RRVITIGMDVRALFTPESARALEKAAMAQEISLMNPIGVHS--QNTNKPFYAIVHRIDVG 118

Query: 190 IVIDLEPSKSGDPALSLAG-----AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQK 244
           +VIDLEP ++G     +AG     +VQSQKLAV AISRLQ+   GDIG+LCDTVVEDV++
Sbjct: 119 MVIDLEPVRTGSGGGGVAGLAAAGSVQSQKLAVRAISRLQS--AGDIGVLCDTVVEDVRE 176

Query: 245 LTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICD 304
           LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICD
Sbjct: 177 LTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICD 236

Query: 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---- 360
           C A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +     
Sbjct: 237 CRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEGGG 296

Query: 361 -----------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEK 409
                      MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQVA QL EK
Sbjct: 297 SGGRSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQVAAQLTEK 356

Query: 410 NILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDI 469
           +ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDI
Sbjct: 357 HILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDI 416

Query: 470 AWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVK 529
           A WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFL WFRSHTAKE+K
Sbjct: 417 ADWLLEYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLSWFRSHTAKEMK 476

Query: 530 WGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME 589
           WGGAKHHP+ KD+  +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ+++
Sbjct: 477 WGGAKHHPDDKDDARRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDID 536

Query: 590 EENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAE 649
           + N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVAE
Sbjct: 537 DSN-TKTMVHGRLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVAE 595

Query: 650 LTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVY 709
           LTGLP  EAMGKSL+ +++  ES   V+ ++C AL GEE+KNVE+KLR F  QKQ   +Y
Sbjct: 596 LTGLPVGEAMGKSLVHDLIFHESADTVDKMLCHALRGEEEKNVEIKLRTFGPQKQKKAIY 655

Query: 710 ILVN 713
           +LVN
Sbjct: 656 LLVN 659


>gi|218683855|gb|ACL00882.1| phytochrome B [Brassica oleracea]
          Length = 653

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/626 (68%), Positives = 512/626 (81%), Gaps = 13/626 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVG+VIDLEP++S DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E RR DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESRREDLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN     
Sbjct: 121 IVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGSEED 180

Query: 358 -------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKN 410
                  + SM+LWGLVVCHHTS R IPFP RYACEFL+QAF LQL MELQ+A+Q++EK 
Sbjct: 181 GSSVAGGRSSMRLWGLVVCHHTSSRCIPFPSRYACEFLMQAFGLQLNMELQLALQMSEKR 240

Query: 411 ILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470
           +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G  + +GV PTE+Q KD+ 
Sbjct: 241 VLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGNYYPLGVAPTEAQTKDVV 300

Query: 471 WWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKW 530
            WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KW
Sbjct: 301 EWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKW 360

Query: 531 GGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE 590
           GGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E 
Sbjct: 361 GGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEA 420

Query: 591 ENDSKVQGNTQQNGSKM--QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
             +SK      Q  S    QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+A
Sbjct: 421 AMNSKTADGAVQPYSMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIA 480

Query: 649 ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
           EL+GL   EAMGKSL+ +++++E++  V+ LI RAL G+ED+NVE+KL+ F  + Q   V
Sbjct: 481 ELSGLSVEEAMGKSLVSDLIYKENEETVDKLISRALRGDEDRNVEIKLKTFSPELQGKAV 540

Query: 709 YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
           +++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+
Sbjct: 541 FVVVNACSSKDYSNNIVGVCFVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFAA 600

Query: 769 DENACCSEWNAAMEKVTGWMRHEVIG 794
           DEN CC EWN A+EK+TGW R EVIG
Sbjct: 601 DENTCCLEWNTALEKLTGWSRSEVIG 626


>gi|406685437|gb|AFS51159.1| phytochrome P, partial [Agathis dammara]
          Length = 655

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/660 (69%), Positives = 528/660 (80%), Gaps = 33/660 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR-------SRSEDFELNG- 133
           AYLS++QRGG IQPFGCMLAVEE TFRII YSEN LEMLDL         R E    +G 
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFRIIAYSENALEMLDLMPQSVPNMDRDEAMGSHGG 60

Query: 134 ----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVG 189
                IG D R LFTP S  +L KAA ++EISL+NPI VHS  ++  KPFYAI+HRIDVG
Sbjct: 61  RRVITIGTDVRALFTPESARALEKAAMAQEISLMNPIGVHS--QNTNKPFYAIVHRIDVG 118

Query: 190 IVIDLEPSKSGDPALSLAG-----AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQK 244
           +VIDLEP ++G     +AG     +VQSQKLAV AISRLQ+   GDIG+LCDTVVEDV++
Sbjct: 119 MVIDLEPVRTGSGGGGVAGLAAAGSVQSQKLAVRAISRLQS--AGDIGVLCDTVVEDVRE 176

Query: 245 LTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICD 304
           LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICD
Sbjct: 177 LTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICD 236

Query: 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---- 360
           C A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +     
Sbjct: 237 CRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEGGG 296

Query: 361 -------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILR 413
                  MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQVA QL EK+ILR
Sbjct: 297 SGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQVAAQLTEKHILR 356

Query: 414 TQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWL 473
           TQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPT +Q+KDIA WL
Sbjct: 357 TQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTGAQIKDIADWL 416

Query: 474 LNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGA 533
           L  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGA
Sbjct: 417 LEYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGA 476

Query: 534 KHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEND 593
           KHHP+ KD+  +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ N 
Sbjct: 477 KHHPDDKDDSRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSN- 535

Query: 594 SKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGL 653
           +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVAELTGL
Sbjct: 536 TKTMVHGRLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVAELTGL 595

Query: 654 PASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
           P  EAMGKSL+ +++  ES   V+ ++C AL GEE+KNVE+KLR F  QKQ   +Y++VN
Sbjct: 596 PVGEAMGKSLVHDLIFHESADTVDKMLCHALRGEEEKNVEIKLRTFGPQKQKKAIYLVVN 655


>gi|309256333|gb|ADO60994.1| phytochrome b [Helianthus annuus]
          Length = 683

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/691 (65%), Positives = 546/691 (79%), Gaps = 18/691 (2%)

Query: 19  TTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEE 78
           +TP  S+ A++  ++K    I  Y  DA L A +EQS  SGKSF+YS+S+ +  + + E+
Sbjct: 1   STP--STSARVDSMSKA---IAQYALDARLHAVYEQSGESGKSFDYSQSIKTTTDSIAEQ 55

Query: 79  QITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLI 135
           Q+TAYLSKIQRGG IQPFGCM+A++  TFR+I +SEN  E L L  +S    D      I
Sbjct: 56  QMTAYLSKIQRGGHIQPFGCMIAIDNTTFRVIAFSENARERLGLAPQSVPSLDKPEILTI 115

Query: 136 GIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLE 195
           G D +TLFTP S   L +A  +REI+LLNP+ VHS +    KPFYAILHRIDVGIVIDLE
Sbjct: 116 GTDVKTLFTPSSALLLERAFRAREITLLNPVWVHSKNSG--KPFYAILHRIDVGIVIDLE 173

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P+++ DPALS+AGAVQSQKLAV AIS LQALPGGDI LLCDTVV++V++LTGYDRVM+Y 
Sbjct: 174 PARTEDPALSIAGAVQSQKLAVRAISNLQALPGGDIKLLCDTVVQNVRELTGYDRVMVYK 233

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+E +R DL+PY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV V+Q 
Sbjct: 234 FHEDEHGEVVAESKRPDLDPYIGLHYPATDIPQASRFLFRQNRVRMIVDCHANPVRVVQD 293

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-------SMKLWGLVV 368
             L QPLCLV STLR+PHGCH QYM NMGSIASL +AVIIN  +       +M LWGLVV
Sbjct: 294 DNLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNEDGASGRGTMGLWGLVV 353

Query: 369 CHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPF 428
           CHHTS R IPFPLRYACEFL+QAF LQL +ELQ+A Q+ EK ILRTQ LLCDM+LRD+P 
Sbjct: 354 CHHTSARCIPFPLRYACEFLMQAFGLQLNLELQLASQMLEKRILRTQTLLCDMILRDSPT 413

Query: 429 SIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSL 488
            IVTQSPSIMDLVKCDGAALYY  + + +G+TPTESQ+KDI  WL   H D TGLSTDSL
Sbjct: 414 GIVTQSPSIMDLVKCDGAALYYQEKYYPLGITPTESQIKDIVEWLSACHTDSTGLSTDSL 473

Query: 489 AEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHP 548
           A+AGYPGAA LG AVCGMA A ITSKDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHP
Sbjct: 474 ADAGYPGAASLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHP 533

Query: 549 RSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQ 608
           RSSF AFLEVVK+RS PWE +E++AIHSLQ+++RDSF++  +EN+SK     Q     ++
Sbjct: 534 RSSFNAFLEVVKSRSSPWENAEMDAIHSLQLILRDSFKD-PDENNSKAVVKVQMEEMGLE 592

Query: 609 GVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVV 668
           GVDELSSVA EMVRLIETATAPIF VD  G INGWNAK+AELTGL  +EAMGKSL+ +++
Sbjct: 593 GVDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKIAELTGLSVNEAMGKSLVRDLI 652

Query: 669 HEESQGAVENLICRALLGEEDKNVELKLRKF 699
           ++ES+  V  L+  AL GEEDKNVE+KLR F
Sbjct: 653 YKESEETVTKLLDHALQGEEDKNVEIKLRTF 683


>gi|406685433|gb|AFS51157.1| phytochrome P, partial [Agathis borneensis]
          Length = 655

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/660 (69%), Positives = 529/660 (80%), Gaps = 33/660 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR-------SRSEDFELNG- 133
           AYLS++QRGG IQPFGCMLAVEE TFRII YSEN LEMLDL         R E    +G 
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFRIIAYSENALEMLDLMPQSVPNMDRDEAMGSHGG 60

Query: 134 ----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVG 189
                IG D R LFTP S  +L KAA ++EISL+NPI VHS  ++  KPFYAI+HRIDVG
Sbjct: 61  RRVITIGTDVRALFTPESARALEKAAMAQEISLMNPIGVHS--QNTNKPFYAIVHRIDVG 118

Query: 190 IVIDLEPSKSGDPALSLAG-----AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQK 244
           +VIDLEP ++G     +AG     +VQSQKLAV AISRLQ+   GDIG+LCDTVVEDV++
Sbjct: 119 MVIDLEPVRTGSGGGGVAGLAAAGSVQSQKLAVRAISRLQS--AGDIGVLCDTVVEDVRE 176

Query: 245 LTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICD 304
           LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICD
Sbjct: 177 LTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICD 236

Query: 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---- 360
           C A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +     
Sbjct: 237 CRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEGGG 296

Query: 361 -------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILR 413
                  MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQVA QL EK+ILR
Sbjct: 297 NGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQVAAQLTEKHILR 356

Query: 414 TQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWL 473
           TQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WL
Sbjct: 357 TQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWL 416

Query: 474 LNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGA 533
           L  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGA
Sbjct: 417 LEYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGA 476

Query: 534 KHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEND 593
           KHHP+ KD+  +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ N 
Sbjct: 477 KHHPDDKDDSRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSN- 535

Query: 594 SKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGL 653
           +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVAELTGL
Sbjct: 536 TKTMVHGRLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVAELTGL 595

Query: 654 PASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
           P  EAMGKSL+ +++  ES   V+ ++C AL GEE+KNVE+KLR F  QKQ   +Y++VN
Sbjct: 596 PVGEAMGKSLVQDLIFHESADTVDKMLCHALRGEEEKNVEMKLRTFGPQKQKKAIYLVVN 655


>gi|406685435|gb|AFS51158.1| phytochrome P, partial [Agathis corbassonii]
          Length = 659

 Score =  922 bits (2384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/664 (68%), Positives = 529/664 (79%), Gaps = 37/664 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR-------SRSEDFELNG- 133
           AYLS++QRGG IQPFGCMLAVEE TFRII YSEN LEMLDL         R E    +G 
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFRIIAYSENALEMLDLMPQSVPNMDRDEAMGSHGG 60

Query: 134 ----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVG 189
                IG+D R LFTP S  +L KAA ++EISL+NPI VHS  ++  KPFYAI+HRIDVG
Sbjct: 61  RRVITIGMDVRALFTPESARALEKAAMAQEISLMNPIGVHS--QNTNKPFYAIVHRIDVG 118

Query: 190 IVIDLEPSKSGDPALSLAG-----AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQK 244
           +VIDLEP ++G     +AG     +VQSQKLAV AISRLQ+   GDIG+LCDTVVEDV++
Sbjct: 119 MVIDLEPVRTGSGGGGVAGLAAAGSVQSQKLAVRAISRLQS--AGDIGVLCDTVVEDVRE 176

Query: 245 LTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICD 304
           LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICD
Sbjct: 177 LTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICD 236

Query: 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---- 360
           C A PV VIQ++ELKQPLCLV STLR+P GCH QYM NMGSIASLVMAV+IN  +     
Sbjct: 237 CRAAPVKVIQAEELKQPLCLVGSTLRAPRGCHAQYMANMGSIASLVMAVVINGNEDQGGG 296

Query: 361 -----------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEK 409
                      MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQVA QL EK
Sbjct: 297 SGGRSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQVAAQLTEK 356

Query: 410 NILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDI 469
           +ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDI
Sbjct: 357 HILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDI 416

Query: 470 AWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVK 529
           A WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+K
Sbjct: 417 ADWLLEYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMK 476

Query: 530 WGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME 589
           WGGAKHHP+ KD+  +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ+++
Sbjct: 477 WGGAKHHPDDKDDARRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDID 536

Query: 590 EENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAE 649
           + N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVAE
Sbjct: 537 DSN-TKTMVHGRLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVAE 595

Query: 650 LTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVY 709
           LTGLP  EAMGKSL+ +++  ES   V+ ++C AL GEE+KNVE+KLR F  QKQ   +Y
Sbjct: 596 LTGLPVGEAMGKSLVHDLIFHESADTVDKMLCHALRGEEEKNVEIKLRTFGPQKQKKAIY 655

Query: 710 ILVN 713
           ++VN
Sbjct: 656 LVVN 659


>gi|218683875|gb|ACL00892.1| phytochrome B [Pachycladon exile]
          Length = 654

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/627 (68%), Positives = 511/627 (81%), Gaps = 14/627 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN     
Sbjct: 121 IVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEED 180

Query: 358 -------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKN 410
                  + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK 
Sbjct: 181 GSNVATGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKR 240

Query: 411 ILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470
           +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD+ 
Sbjct: 241 VLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKDVV 300

Query: 471 WWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKW 530
            WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHT KE+KW
Sbjct: 301 EWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTGKEIKW 360

Query: 531 GGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE 590
           GGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E 
Sbjct: 361 GGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEA 420

Query: 591 ENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
             +SK      Q    M   QG+DEL +VA EMVRLIETAT PIF VDS G INGWNAK+
Sbjct: 421 AKNSKTVDGAVQPYMDMVGEQGIDELGAVAREMVRLIETATVPIFAVDSGGCINGWNAKI 480

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
           AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+EDKNVE+KL+ F  + Q   
Sbjct: 481 AELTGLSVEEAMGKSLVSDLIYKENEETVNKLLSRALRGDEDKNVEVKLKTFSPELQGKA 540

Query: 708 VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFA 767
           V+++VNAC+S+DY NN+ GVCFVGQD+T +K+LMDKFI +QGDY+AI+ S NPLIPPIFA
Sbjct: 541 VFVVVNACSSKDYLNNIVGVCFVGQDVTGQKILMDKFINIQGDYKAIVHSPNPLIPPIFA 600

Query: 768 SDENACCSEWNAAMEKVTGWMRHEVIG 794
           +DEN CC EWN AMEK+ GW R EVIG
Sbjct: 601 ADENTCCLEWNTAMEKLMGWSRSEVIG 627


>gi|406685445|gb|AFS51163.1| phytochrome P, partial [Agathis moorei]
          Length = 659

 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/664 (68%), Positives = 529/664 (79%), Gaps = 37/664 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR-------SRSEDFELNG- 133
           AYLS++QRGG IQPFGCMLAVEE TFRII YS+N LEMLDL         R E    +G 
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFRIIAYSDNALEMLDLMPQSVPNMDRDEAMGSHGG 60

Query: 134 ----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVG 189
                IG+D R LFTP S  +L KAA ++EISL+NPI VHS  ++  KPFYAI+HRIDVG
Sbjct: 61  RRVITIGMDVRALFTPESARALEKAAMAQEISLMNPIGVHS--QNTNKPFYAIVHRIDVG 118

Query: 190 IVIDLEPSKSGDPALSLAG-----AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQK 244
           +VIDLEP ++G     +AG     +VQSQKLAV AISRLQ+   GD+G+LCDTVVEDV++
Sbjct: 119 MVIDLEPVRTGSGGGGVAGLAAAGSVQSQKLAVRAISRLQS--AGDVGVLCDTVVEDVRE 176

Query: 245 LTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICD 304
           LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICD
Sbjct: 177 LTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICD 236

Query: 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---- 360
           C A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +     
Sbjct: 237 CRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDQGGG 296

Query: 361 -----------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEK 409
                      MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQVA QL EK
Sbjct: 297 SGGRSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQVAAQLTEK 356

Query: 410 NILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDI 469
           +ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDI
Sbjct: 357 HILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDI 416

Query: 470 AWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVK 529
           A WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+K
Sbjct: 417 ADWLLEYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMK 476

Query: 530 WGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME 589
           WGGAKHHP+ KD+  +MHPRSSFKAFLEV+K RS PWE  E++AIHSLQ+++R SFQ+++
Sbjct: 477 WGGAKHHPDDKDDARRMHPRSSFKAFLEVIKRRSLPWENVEMDAIHSLQLILRGSFQDID 536

Query: 590 EENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAE 649
           + N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+  INGWNAKVAE
Sbjct: 537 DSN-TKTMVHGRLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNALINGWNAKVAE 595

Query: 650 LTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVY 709
           LTGLP  EAMGKSL+ +++  ES   V+ ++C AL GEE+KNVE+KLR F  QKQ   +Y
Sbjct: 596 LTGLPVGEAMGKSLVHDLIFHESADTVDKMLCHALRGEEEKNVEIKLRTFGPQKQKKAIY 655

Query: 710 ILVN 713
           ++VN
Sbjct: 656 LVVN 659


>gi|218683885|gb|ACL00897.1| phytochrome B [Planodes virginica]
          Length = 653

 Score =  920 bits (2377), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/626 (68%), Positives = 515/626 (82%), Gaps = 13/626 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN     
Sbjct: 121 IVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEED 180

Query: 358 -------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKN 410
                  ++SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK 
Sbjct: 181 GNNVGGGRNSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKR 240

Query: 411 ILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470
           +LRTQ LLCDMLLRD+P  IVTQSPSIM+LVKCDGAA  Y G+ + +GV PTE+QLKDI 
Sbjct: 241 VLRTQTLLCDMLLRDSPAGIVTQSPSIMNLVKCDGAAFLYHGKYYRLGVAPTEAQLKDIV 300

Query: 471 WWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKW 530
            WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KW
Sbjct: 301 EWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKW 360

Query: 531 GGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE 590
           GGAKHHP+ KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E 
Sbjct: 361 GGAKHHPDDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEV 420

Query: 591 ENDSKVQGNTQQ--NGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
             +SK      Q  + S   G+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+A
Sbjct: 421 AMNSKAADGAVQCRDMSGEHGLDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIA 480

Query: 649 ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
           ELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+EDKNVE+KL+ F  + Q   V
Sbjct: 481 ELTGLSVEEAMGKSLVSDLIYKENEETVNKLLSRALKGDEDKNVEVKLKTFSPELQGKAV 540

Query: 709 YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
           +++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+
Sbjct: 541 FMVVNACSSKDYLNNIVGVCFVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFAA 600

Query: 769 DENACCSEWNAAMEKVTGWMRHEVIG 794
           DEN CC EWN AMEK+TGW R EVIG
Sbjct: 601 DENTCCLEWNTAMEKLTGWSRGEVIG 626


>gi|406685447|gb|AFS51164.1| phytochrome P, partial [Agathis ovata]
          Length = 659

 Score =  919 bits (2374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/664 (68%), Positives = 528/664 (79%), Gaps = 37/664 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLR-------SRSEDFELNG- 133
           AYLS++QRGG IQPFGCMLAVEE TFRII YS+N LEMLDL         R E    +G 
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFRIIAYSKNALEMLDLMPQSVPNMDRDEAMGSHGG 60

Query: 134 ----LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVG 189
                IG+D R LFTP S  +L KAA ++EISL+NPI VHS  ++  KPF AI+HRIDVG
Sbjct: 61  RRVITIGMDVRALFTPESARALEKAAMAQEISLMNPIGVHS--QNTNKPFCAIVHRIDVG 118

Query: 190 IVIDLEPSKSGDPALSLAG-----AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQK 244
           +VIDLEP ++G     +AG     +VQSQKLAV  ISRLQ+   GDIG+LCDTVVEDV++
Sbjct: 119 MVIDLEPVRTGSGGGGVAGLAAAGSVQSQKLAVRTISRLQS--AGDIGVLCDTVVEDVRE 176

Query: 245 LTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICD 304
           LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICD
Sbjct: 177 LTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICD 236

Query: 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---- 360
           C A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +     
Sbjct: 237 CRAAPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDQGGG 296

Query: 361 -----------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEK 409
                      MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQVA QL EK
Sbjct: 297 SGGRSGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQVAAQLTEK 356

Query: 410 NILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDI 469
           +ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDI
Sbjct: 357 HILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDI 416

Query: 470 AWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVK 529
           A WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+K
Sbjct: 417 ADWLLEYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMK 476

Query: 530 WGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME 589
           WGGAKHHP+ KD+  +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ+++
Sbjct: 477 WGGAKHHPDDKDDARRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDID 536

Query: 590 EENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAE 649
           + N +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVAE
Sbjct: 537 DSN-TKTMVHGRLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVAE 595

Query: 650 LTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVY 709
           LTGLP  EAMGKSL+ +++  ES   V+ ++C AL GEE+KNVE+KLR F  QKQ   +Y
Sbjct: 596 LTGLPVGEAMGKSLVHDLIFHESADTVDKMLCHALRGEEEKNVEIKLRTFGPQKQKKAIY 655

Query: 710 ILVN 713
           ++VN
Sbjct: 656 LVVN 659


>gi|218683863|gb|ACL00886.1| phytochrome B [Capsella bursa-pastoris]
          Length = 654

 Score =  918 bits (2372), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/627 (68%), Positives = 511/627 (81%), Gaps = 14/627 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVVE 
Sbjct: 1   ILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN     
Sbjct: 121 IVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEED 180

Query: 358 -------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKN 410
                  + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK 
Sbjct: 181 GSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKR 240

Query: 411 ILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470
           +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD+ 
Sbjct: 241 VLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKDVV 300

Query: 471 WWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKW 530
            WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KW
Sbjct: 301 EWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKW 360

Query: 531 GGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE 590
           GGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E   
Sbjct: 361 GGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESGA 420

Query: 591 ENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
             +SK      Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+
Sbjct: 421 AMNSKTGDGVVQPYRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKI 480

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
           AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+EDKNVE+KL+ F  + Q   
Sbjct: 481 AELTGLSVEEAMGKSLVSDLIYKENEETVNKLLSRALRGDEDKNVEVKLKTFTPELQGKA 540

Query: 708 VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFA 767
           V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA
Sbjct: 541 VFVIVNACSSKDYLNNIVGVCFVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFA 600

Query: 768 SDENACCSEWNAAMEKVTGWMRHEVIG 794
           +DEN CC EWN AMEK+TG  R EV+G
Sbjct: 601 ADENTCCLEWNTAMEKLTGLSRSEVVG 627


>gi|218683861|gb|ACL00885.1| phytochrome B [Capsella bursa-pastoris]
          Length = 654

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/627 (68%), Positives = 510/627 (81%), Gaps = 14/627 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQALPGGDI LLCDTVVE 
Sbjct: 1   ILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN     
Sbjct: 121 IVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEED 180

Query: 358 -------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKN 410
                  + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ A+Q++EK 
Sbjct: 181 GSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQPALQMSEKR 240

Query: 411 ILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470
           +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD+ 
Sbjct: 241 VLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKDVV 300

Query: 471 WWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKW 530
            WLL NH D TGLSTDSL +AGYPGAA LG AVC MA A IT +DFLFWFRSHTAKE+KW
Sbjct: 301 EWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCSMAVAYITKRDFLFWFRSHTAKEIKW 360

Query: 531 GGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE 590
           GGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E 
Sbjct: 361 GGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEA 420

Query: 591 ENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
             +SK      Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+
Sbjct: 421 AMNSKTGDGVVQPYRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDTGGCINGWNAKI 480

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
           AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+EDKNVE+KL+ F  + Q   
Sbjct: 481 AELTGLSVEEAMGKSLVSDLIYKENEETVNKLLSRALRGDEDKNVEVKLKTFTPELQGKA 540

Query: 708 VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFA 767
           V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA
Sbjct: 541 VFVVVNACSSKDYLNNIVGVCFVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFA 600

Query: 768 SDENACCSEWNAAMEKVTGWMRHEVIG 794
           +DEN CC EWN AMEK+TGW   EV+G
Sbjct: 601 ADENTCCLEWNTAMEKLTGWSLSEVVG 627


>gi|218683851|gb|ACL00880.1| phytochrome B [Barbarea vulgaris]
          Length = 654

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/627 (68%), Positives = 517/627 (82%), Gaps = 14/627 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN     
Sbjct: 121 IVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEEE 180

Query: 358 -------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKN 410
                  + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK 
Sbjct: 181 GNNVGGGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKR 240

Query: 411 ILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470
           +LRTQ LLCDMLLRD+P  IVTQSPSIM+LVKCDGAA  Y G+ + +GV PTE+Q+KDI 
Sbjct: 241 VLRTQTLLCDMLLRDSPAGIVTQSPSIMNLVKCDGAAFLYHGKYYPLGVAPTEAQIKDIV 300

Query: 471 WWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKW 530
            WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KW
Sbjct: 301 EWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKW 360

Query: 531 GGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE 590
           GGAKHHPE KD+G +MHPRSSF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E 
Sbjct: 361 GGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEA 420

Query: 591 ENDSK-VQGNTQ--QNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
             +SK V G  Q  ++ S  QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+
Sbjct: 421 AMNSKSVDGAVQPCRDMSGEQGLDELGAVAREMVRLIETATVPIFAVDTGGCINGWNAKI 480

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
           AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q   
Sbjct: 481 AELTGLSVEEAMGKSLVSDLIYKENEETVNKLLSRALRGDEEKNVEVKLKTFSPELQEKA 540

Query: 708 VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFA 767
           ++++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S N LIPPIFA
Sbjct: 541 IFMVVNACSSKDYLNNIVGVCFVGQDVTGQKIVMDKFINIQGDYKAIVHSPNLLIPPIFA 600

Query: 768 SDENACCSEWNAAMEKVTGWMRHEVIG 794
           +DEN CC EWN AMEK+TGW R E+IG
Sbjct: 601 ADENTCCLEWNTAMEKLTGWSRGEMIG 627


>gi|1813953|emb|CAA71838.1| photoreceptor [Ceratodon purpureus]
          Length = 1299

 Score =  913 bits (2359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/762 (59%), Positives = 565/762 (74%), Gaps = 16/762 (2%)

Query: 33  NKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGL 92
           +K    +    ADA L A +E S  SG SF+YS+SV    E VP   +TAYL ++QRGGL
Sbjct: 8   SKHSVRVAQTTADAALEAVYEMSGDSGDSFDYSKSVGQSAESVPAGAVTAYLQRMQRGGL 67

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDL--RSRSEDFELNGL-IGIDARTLFTPPSGA 149
           IQ FGCM+AVEEP F +I YSEN  E LDL  ++     E++ L IG D RTLFTP S A
Sbjct: 68  IQNFGCMVAVEEPNFCVIAYSENASEFLDLIPQAVPSMGEMDVLGIGTDIRTLFTPSSSA 127

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGD-PALSLAG 208
           +L KAAA+++ISLLNPI VH   R   KP YAI HRID+GIVID E  K  D P  + AG
Sbjct: 128 ALEKAAATQDISLLNPITVHC--RRSGKPLYAIAHRIDIGIVIDFEAVKMIDVPVSAAAG 185

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           A+QS KLA  AI+RLQALPGGDI LLCDT+VE+V++LTGYDRVM + FH+D+HGEVV+EI
Sbjct: 186 ALQSHKLAARAITRLQALPGGDIELLCDTIVEEVRELTGYDRVMAFKFHEDEHGEVVAEI 245

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RR DLEPY+G+H+PA DIPQA+RFL  +NRVR+I DC+A PV +IQ  +++QP+ L  ST
Sbjct: 246 RRMDLEPYMGLHYPATDIPQASRFLLMKNRVRLIADCYASPVKLIQDLDIRQPVSLAGST 305

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSM---------KLWGLVVCHHTSPRYIPF 379
           LR+PHGCH QYM NMGSIASLVMAVIIN  +           KLWGLVVC HTSPR +PF
Sbjct: 306 LRAPHGCHAQYMGNMGSIASLVMAVIINDNEEYSRGAIQRGRKLWGLVVCQHTSPRTVPF 365

Query: 380 PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
           PLR  CEFL+Q F +QL + +++  QL EK+ILRTQ LLCDMLLRDAP  IV+Q+P+IMD
Sbjct: 366 PLRSVCEFLMQVFGMQLNLHVELGAQLREKHILRTQTLLCDMLLRDAPIGIVSQTPNIMD 425

Query: 440 LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
           LVKCDGAALYYG R WL+G TPTE+Q+K+IA WLL +H D TGLSTDSLA+A YPGA LL
Sbjct: 426 LVKCDGAALYYGKRVWLLGTTPTENQIKEIADWLLEHHNDSTGLSTDSLADANYPGAHLL 485

Query: 500 GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
           G AVCGMA A+IT+KDFLFWFRSHTA EVKWGGAKH P+ KD+G KMHPRSSFKAFLEVV
Sbjct: 486 GDAVCGMAAAKITAKDFLFWFRSHTATEVKWGGAKHDPDEKDDGRKMHPRSSFKAFLEVV 545

Query: 560 KNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACE 619
             RS PWE  E++AIHSLQ+++R SF+++  ++D+K   + + N  K+QGV+E +++A E
Sbjct: 546 NKRSPPWEDVEMDAIHSLQLILRGSFRDI-ADSDTKTMIHARLNDLKLQGVEERNALANE 604

Query: 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679
           M R++ETA API  VDS G IN WNAK+A++TGLP  EAM  SL  ++V +ES   VE L
Sbjct: 605 MSRVLETAAAPILAVDSRGMINAWNAKIAQVTGLPVEEAMHCSLTKDLVLDESVVVVERL 664

Query: 680 ICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKV 739
           +  AL GEE++NVE+KL+ F  Q     V ++VNAC SRD  + V GV FVGQD+T +++
Sbjct: 665 LSLALQGEEEQNVEIKLKTFGTQTTERAVILIVNACCSRDASDTVVGVFFVGQDVTEQRM 724

Query: 740 LMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAM 781
            MD+F R+QG  +  +Q  +PL+ P F  DE     + N+A+
Sbjct: 725 FMDRFTRIQGGEKTTVQDPHPLMRPSFDGDEFGRTFKRNSAL 766


>gi|309256335|gb|ADO60995.1| phytochrome b [Helianthus annuus]
          Length = 683

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/691 (65%), Positives = 542/691 (78%), Gaps = 18/691 (2%)

Query: 19  TTPFKSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEE 78
           +TP  S+ A++  ++K    I  Y  DA L A +EQS  SGKSF+YS+S+ +  + + E+
Sbjct: 1   STP--STSARVDSMSKA---IAQYALDARLHAVYEQSGESGKSFDYSQSIKTTTDSIAEQ 55

Query: 79  QITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE---DFELNGLI 135
           Q+TAYLSKIQRGG IQPFGCM+A++  TFR+I +SEN  E L L  +S    D      I
Sbjct: 56  QMTAYLSKIQRGGHIQPFGCMIAIDNTTFRVIAFSENARERLGLAPQSVPSLDKPEILTI 115

Query: 136 GIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLE 195
           G D +TLFTP S   L +A  +REI+LLNP+ VHS +    KPFYAILHRIDVGIVIDLE
Sbjct: 116 GTDVKTLFTPSSALLLERAFRAREITLLNPVWVHSKNSG--KPFYAILHRIDVGIVIDLE 173

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P+++ DPALS+AGAVQSQKLAV AIS LQALPGGDI LLCDTVV++V++LTGYDRVM+Y 
Sbjct: 174 PARTEDPALSIAGAVQSQKLAVRAISNLQALPGGDIKLLCDTVVQNVRELTGYDRVMVYK 233

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+E +R DL+PY+G+H+PA DIPQA+RFLF+QNRVRMI DCHA PV V+Q 
Sbjct: 234 FHEDEHGEVVAESKRPDLDPYIGLHYPATDIPQASRFLFRQNRVRMIVDCHANPVRVVQD 293

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-------SMKLWGLVV 368
             L QPLCLV STLR+PHGCH QYM NMGSIASL +AVIIN  +       +M LWGLVV
Sbjct: 294 DNLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNEDGASGRGTMGLWGLVV 353

Query: 369 CHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPF 428
           CHHTS R IPFPLRYACEFL+QAF LQL +ELQ+A Q+ EK ILRTQ LLCDM+LRD+P 
Sbjct: 354 CHHTSARCIPFPLRYACEFLMQAFGLQLNLELQLASQMLEKRILRTQTLLCDMILRDSPT 413

Query: 429 SIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSL 488
            IVTQSPSIMDLVKCDGAALYY  + + +G+TPTESQ+KDI  WL   H D TGLSTDSL
Sbjct: 414 GIVTQSPSIMDLVKCDGAALYYQEKYYPLGITPTESQIKDIVEWLSACHTDSTGLSTDSL 473

Query: 489 AEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHP 548
           A+AGY GAA LG AVCGMA A ITSKDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHP
Sbjct: 474 ADAGYXGAASLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHP 533

Query: 549 RSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQ 608
           RSSF AFLEVVK+RS  WE +E++AIHSLQ+++RDSF++  +EN SK     Q     ++
Sbjct: 534 RSSFNAFLEVVKSRSSXWENAEMDAIHSLQLILRDSFKD-PDENXSKAVVKVQMXEMGLE 592

Query: 609 GVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVV 668
           GVDELSSVA EMVRLIETATAPIF VD  G INGWNAK+AELTGL  +EAMGKSL+ +++
Sbjct: 593 GVDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKIAELTGLSVNEAMGKSLVRDLI 652

Query: 669 HEESQGAVENLICRALLGEEDKNVELKLRKF 699
           ++ES+  V  L+  AL GEEDKNVE+KL  F
Sbjct: 653 YKESEETVTKLLDHALQGEEDKNVEIKLXTF 683


>gi|218683883|gb|ACL00896.1| phytochrome B [Pachycladon novaezelandiae]
          Length = 654

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/627 (68%), Positives = 513/627 (81%), Gaps = 14/627 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVG+VIDLEP+++  PALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRIDVGVVIDLEPARTEGPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN     
Sbjct: 121 IVDCYATPVLVVQEDGLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEED 180

Query: 358 -------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKN 410
                  + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK 
Sbjct: 181 GSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKR 240

Query: 411 ILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470
           +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD+ 
Sbjct: 241 VLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKDVV 300

Query: 471 WWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKW 530
            WLL NH D TGLSTDSL +AGYPGAA L  AVCGMA A IT +DFLFWFRSHT KE+KW
Sbjct: 301 EWLLANHADSTGLSTDSLGDAGYPGAAALEDAVCGMAVAYITKRDFLFWFRSHTGKEIKW 360

Query: 531 GGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE 590
           GGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E 
Sbjct: 361 GGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEA 420

Query: 591 ENDSK-VQGNTQ--QNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
             +SK V G  Q  ++ +  QG+DEL +VA EMVRLIETAT PIF VDS G INGWNAK+
Sbjct: 421 AMNSKTVDGAVQPYRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDSGGCINGWNAKI 480

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
           AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+EDKNVE+KL+ F  + Q   
Sbjct: 481 AELTGLSVEEAMGKSLVSDLIYKENEETVNKLLSRALRGDEDKNVEVKLKTFSPELQGKA 540

Query: 708 VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFA 767
           V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA
Sbjct: 541 VFVVVNACSSKDYLNNIVGVCFVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFA 600

Query: 768 SDENACCSEWNAAMEKVTGWMRHEVIG 794
           +DEN CC EWN AMEK+ GW R EVIG
Sbjct: 601 ADENTCCLEWNTAMEKLMGWSRSEVIG 627


>gi|410718222|gb|AFV79487.1| phytochrome N, partial [Pinus sylvestris]
          Length = 850

 Score =  912 bits (2357), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/848 (52%), Positives = 585/848 (68%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ + L + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERLPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLRYACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY  
Sbjct: 121  GIQLNKEVELAAQIREKQILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEE 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+GVTPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + N   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSRKET-DGNGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ LI+ +V E S   V+ ++  AL G E++NV
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN-LVEETSAENVKRMLHLALQGVEEQNV 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            +++L++   ++    V +LVNAC+SRD K NV GVCFV QD+T +K++MDKF R+QGDY 
Sbjct: 419  QIELKRHGSEEDKGPVVLLVNACSSRDLKENVVGVCFVAQDVTGQKIVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +DE   CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           +TGQ TE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+Q
Sbjct: 539  GQNALTQLRIILNSSMTGQETEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLQ 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHMLEQAAMKRLKALTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS  C++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKGLEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P+ + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPA-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG G+P  L++ M+N      + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPGLPEKLVQQMFNFDPD-MSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|2851597|sp|P25848.3|PHY1_CERPU RecName: Full=Light-sensor Protein kinase; Includes: RecName:
           Full=Phytochrome; Includes: RecName: Full=Protein kinase
 gi|1839248|gb|AAB47762.1| phytochrome [Ceratodon purpureus]
          Length = 1307

 Score =  912 bits (2356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/772 (58%), Positives = 568/772 (73%), Gaps = 16/772 (2%)

Query: 23  KSSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITA 82
           K+  +     +K    +    ADA L A +E S  SG SF+YS+SV    E VP   +TA
Sbjct: 6   KTYSSTTSAKSKHSVRVAQTTADAALEAVYEMSGDSGDSFDYSKSVGQSAESVPAGAVTA 65

Query: 83  YLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDL--RSRSEDFELNGL-IGIDA 139
           YL ++QR GLIQ FGCM+AVEEP F +I YSEN  E LDL  ++     E++ L IG D 
Sbjct: 66  YLQRMQREGLIQNFGCMVAVEEPNFCVIAYSENASEFLDLIPQAVPSMGEMDVLGIGTDI 125

Query: 140 RTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKS 199
           RTLFTP S A+L KAAA+++ISLLNPI VH   R   KP YAI HRID+GIVID E  K 
Sbjct: 126 RTLFTPSSSAALEKAAATQDISLLNPITVHC--RRSGKPLYAIAHRIDIGIVIDFEAVKM 183

Query: 200 GD-PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHD 258
            D P  + AGA+QS KLA  AI+RLQALPGGDI LLCDT+VE+V++LTGYDRVM + FH+
Sbjct: 184 IDVPVSAAAGALQSHKLAARAITRLQALPGGDIELLCDTIVEEVRELTGYDRVMAFKFHE 243

Query: 259 DDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKEL 318
           D+HGEVV+EIRR DLEPY+G+H+PA DIPQA+RFL  +NRVR+I DC+A PV +IQ  ++
Sbjct: 244 DEHGEVVAEIRRMDLEPYMGLHYPATDIPQASRFLLMKNRVRLIADCYASPVKLIQDPDI 303

Query: 319 KQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSM---------KLWGLVVC 369
           +QP+ L  STLR+PHGCH QYM NMGSIASLVMAVIIN  +           KLWGLVVC
Sbjct: 304 RQPVSLAGSTLRAPHGCHAQYMGNMGSIASLVMAVIINDNEEYSRGAIQRGRKLWGLVVC 363

Query: 370 HHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFS 429
            HTSPR +PFPLR  CEFL+Q F +QL + +++A QL EK+ILRTQ LLCDMLLRDAP  
Sbjct: 364 QHTSPRTVPFPLRSVCEFLMQVFGMQLNLHVELAAQLREKHILRTQTLLCDMLLRDAPIG 423

Query: 430 IVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLA 489
           IV+Q+P+IMDLVKCDGAALYYG R WL+G TPTE+Q+K+IA WLL +H D TGLSTDSLA
Sbjct: 424 IVSQTPNIMDLVKCDGAALYYGKRVWLLGTTPTENQIKEIADWLLEHHNDSTGLSTDSLA 483

Query: 490 EAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPR 549
           +A YPGA LLG AVCGMA A+IT+KDFLFWFRSHTA EVKWGGAKH P+ KD+G KMHPR
Sbjct: 484 DANYPGAHLLGDAVCGMAAAKITAKDFLFWFRSHTATEVKWGGAKHDPDEKDDGRKMHPR 543

Query: 550 SSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQG 609
           SSFKAFLEVV  RS PWE  E++AIHSLQ+++R SF+++  ++D+K   + + N  K+QG
Sbjct: 544 SSFKAFLEVVNKRSPPWEDVEMDAIHSLQLILRGSFRDI-ADSDTKTMIHARLNDLKLQG 602

Query: 610 VDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVH 669
           V+E +++A EM R++ETA API  VDS G IN WNAK+A++TGLP  EAM  SL  ++V 
Sbjct: 603 VEERNALANEMSRVLETAAAPILAVDSRGMINAWNAKIAQVTGLPVEEAMHCSLTKDLVL 662

Query: 670 EESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCF 729
           +ES   VE L+  AL GEE++NVE+KL+ F  Q     V ++VNAC SRD  + V GV F
Sbjct: 663 DESVVVVERLLSLALQGEEEQNVEIKLKTFGTQTTERAVILIVNACCSRDASDFVVGVFF 722

Query: 730 VGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAM 781
           VGQD+T +++ MD+F R+QG  +  +Q  +PL+ P F  DE     + N+A+
Sbjct: 723 VGQDVTEQRMFMDRFTRIQGGEKTTVQDPHPLMRPSFDGDEFGRTFKRNSAL 774


>gi|410718260|gb|AFV79506.1| phytochrome N, partial [Pinus sylvestris]
          Length = 850

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/848 (52%), Positives = 585/848 (68%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ + L + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERLPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLRYACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY  
Sbjct: 121  GIQLNKEVELAAQIREKQILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEE 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+GVTPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + +   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSRKET-DGSGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ LI+ +V E S   V+ ++  AL G E++NV
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN-LVEETSAENVKRMLHLALQGVEEQNV 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            +++L++   ++    V +LVNAC+SRD K NV GVCFV QD+T +K++MDKF R+QGDY 
Sbjct: 419  QIELKRHGSEEDKGPVVLLVNACSSRDLKENVVGVCFVAQDVTGQKIVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +DE   CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           +TGQGTE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+ 
Sbjct: 539  GQNALTQLRIILNSSMTGQGTEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLH 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHMLEQAAMKRLKALTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS  C++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKGLEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P+ + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPA-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG G+P  L++ M+N      + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPGLPEKLVQQMFNFDPD-MSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|218683839|gb|ACL00874.1| phytochrome B [Peritoma arborea]
          Length = 652

 Score =  910 bits (2352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/625 (68%), Positives = 511/625 (81%), Gaps = 12/625 (1%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E +R+DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESKRADLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA+P+ VIQ + L QPLCLV STLR+PHGCH QYM NMG++ASL MAVIIN     
Sbjct: 121 IVDCHAMPIHVIQDERLTQPLCLVGSTLRAPHGCHAQYMANMGTMASLAMAVIINGSEED 180

Query: 358 -------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKN 410
                  ++SM+LWGLVVCHHTSPR IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK 
Sbjct: 181 GSNVTGGRNSMRLWGLVVCHHTSPRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKR 240

Query: 411 ILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470
           +LRTQ LLCDMLLRD+P  IV QSPSIMDLVKCDGAA  Y G+ + +GV P+E+Q+KDI 
Sbjct: 241 VLRTQTLLCDMLLRDSPSGIVMQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEAQIKDIV 300

Query: 471 WWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKW 530
            WLL NHGD TGLSTDSL +AGYPGAA LG AVCGMA A IT KDF+FWFRSHTAKE+KW
Sbjct: 301 EWLLANHGDSTGLSTDSLGDAGYPGAATLGDAVCGMAVAYITRKDFIFWFRSHTAKEIKW 360

Query: 531 GGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE 590
           GGAKHHPE KD+  +MHPRSSFKAFLEVVK+RS PWE +E++ IHSLQ+++RDS +E E 
Sbjct: 361 GGAKHHPEDKDDSQRMHPRSSFKAFLEVVKSRSLPWENAEMDVIHSLQLILRDSLKESEA 420

Query: 591 ENDSKVQGNTQQNGSK-MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAE 649
            N        Q  GS  +QG+DELS+VA EMVRLIETAT PIF VD  G INGWNAK+AE
Sbjct: 421 INAKAAVRADQPGGSNAVQGLDELSAVAREMVRLIETATVPIFAVDVDGHINGWNAKIAE 480

Query: 650 LTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVY 709
           LTGL   EAMGKSL+ +++++E +     L+  AL G+E KNVE+KL+ F  + +   V+
Sbjct: 481 LTGLSVEEAMGKSLVHDLIYKEYEEPTAKLLSCALKGDEGKNVEIKLKTFSQELEGKAVF 540

Query: 710 ILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASD 769
           ++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S +PLIPPIFA+D
Sbjct: 541 VIVNACSSKDYLNNIVGVCFVGQDVTGQKIVMDKFIHIQGDYKAIVHSPSPLIPPIFAAD 600

Query: 770 ENACCSEWNAAMEKVTGWMRHEVIG 794
           EN CC EWN AME ++GW R EVIG
Sbjct: 601 ENTCCLEWNTAMENLSGWSRSEVIG 625


>gi|218683847|gb|ACL00878.1| phytochrome B [Arabidopsis halleri]
          Length = 654

 Score =  909 bits (2348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/627 (67%), Positives = 514/627 (81%), Gaps = 14/627 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DC+A PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN     
Sbjct: 121 IVDCNAKPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEED 180

Query: 358 -------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKN 410
                  + SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK 
Sbjct: 181 GSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKR 240

Query: 411 ILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470
           +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD+ 
Sbjct: 241 VLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKDVV 300

Query: 471 WWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKW 530
            WLL NH D TGLSTDSL +AGYP AA LG AVCGMA A IT +DFLFWFRSHTAKE+KW
Sbjct: 301 EWLLANHADSTGLSTDSLGDAGYPDAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKW 360

Query: 531 GGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE 590
           GGAKHHPE KD+G +MHPR SF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E 
Sbjct: 361 GGAKHHPEDKDDGQRMHPRLSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEA 420

Query: 591 ENDSK-VQGNTQ--QNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
             +SK V G  Q  ++ +  QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+
Sbjct: 421 AMNSKAVDGAVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKI 480

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
           AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+E++NVE+KL+ F  + Q   
Sbjct: 481 AELTGLSVEEAMGKSLVSDLIYKENEETVNKLLSRALRGDEERNVEVKLKTFSPELQGKA 540

Query: 708 VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFA 767
           V+++VNAC S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA
Sbjct: 541 VFVVVNACFSKDYLNNIVGVCFVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFA 600

Query: 768 SDENACCSEWNAAMEKVTGWMRHEVIG 794
           +DEN CC EWN AMEK+TGW R EVIG
Sbjct: 601 ADENTCCLEWNMAMEKLTGWSRSEVIG 627


>gi|410718122|gb|AFV79437.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718124|gb|AFV79438.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718126|gb|AFV79439.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718134|gb|AFV79443.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718136|gb|AFV79444.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718138|gb|AFV79445.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718142|gb|AFV79447.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718144|gb|AFV79448.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718150|gb|AFV79451.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718152|gb|AFV79452.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718154|gb|AFV79453.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718156|gb|AFV79454.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718158|gb|AFV79455.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718160|gb|AFV79456.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718162|gb|AFV79457.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718164|gb|AFV79458.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718168|gb|AFV79460.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718172|gb|AFV79462.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718176|gb|AFV79464.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718178|gb|AFV79465.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718180|gb|AFV79466.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718182|gb|AFV79467.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718184|gb|AFV79468.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718186|gb|AFV79469.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718188|gb|AFV79470.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718190|gb|AFV79471.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718192|gb|AFV79472.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718194|gb|AFV79473.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718196|gb|AFV79474.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718198|gb|AFV79475.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718200|gb|AFV79476.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718202|gb|AFV79477.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718204|gb|AFV79478.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718206|gb|AFV79479.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718208|gb|AFV79480.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718210|gb|AFV79481.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718212|gb|AFV79482.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718216|gb|AFV79484.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718220|gb|AFV79486.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718224|gb|AFV79488.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718226|gb|AFV79489.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718228|gb|AFV79490.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718230|gb|AFV79491.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718232|gb|AFV79492.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718234|gb|AFV79493.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718236|gb|AFV79494.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718238|gb|AFV79495.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718240|gb|AFV79496.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718242|gb|AFV79497.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718244|gb|AFV79498.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718246|gb|AFV79499.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718248|gb|AFV79500.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718250|gb|AFV79501.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718252|gb|AFV79502.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718256|gb|AFV79504.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718262|gb|AFV79507.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718266|gb|AFV79509.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718274|gb|AFV79513.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718276|gb|AFV79514.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718282|gb|AFV79517.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718284|gb|AFV79518.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718288|gb|AFV79520.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718290|gb|AFV79521.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718292|gb|AFV79522.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718296|gb|AFV79524.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718306|gb|AFV79529.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718308|gb|AFV79530.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718310|gb|AFV79531.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718314|gb|AFV79533.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718316|gb|AFV79534.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718318|gb|AFV79535.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718324|gb|AFV79538.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718328|gb|AFV79540.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718330|gb|AFV79541.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718332|gb|AFV79542.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718336|gb|AFV79544.1| phytochrome N, partial [Pinus sylvestris]
          Length = 850

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/848 (52%), Positives = 584/848 (68%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ + L + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERLPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLRYACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY  
Sbjct: 121  GIQLNKEVELAAQIREKQILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEE 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+GVTPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + +   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSRKET-DGSGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ LI+ +V E S   V+ ++  AL G E++NV
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN-LVEETSAENVKRMLHLALQGVEEQNV 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            +++L++   ++    V +LVNAC+SRD K NV GVCFV QD+T +K++MDKF R+QGDY 
Sbjct: 419  QIELKRHGSEEDKGPVVLLVNACSSRDLKENVVGVCFVAQDVTGQKIVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +DE   CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           +TGQ TE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+ 
Sbjct: 539  GQNALTQLRIILNSSMTGQETEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLH 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHMLEQAAMKRLKALTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS  C++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKGLEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P+ + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPA-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG G+P  L++ M+N      + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPGLPEKLVQQMFNFDPD-MSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|410718130|gb|AFV79441.1| phytochrome N, partial [Pinus sylvestris]
          Length = 850

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/848 (52%), Positives = 584/848 (68%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ + L + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERLPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLRYACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY  
Sbjct: 121  GIQLNKEVELAAQIREKQILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEE 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+GVTPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + +   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSRKET-DGSGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ LI+ +V E S   V+ ++  AL G E++NV
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN-LVEETSAENVKRMLHLALQGVEEQNV 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            +++L++   ++    V +LVNAC+SRD K NV GVCFV QD+T +K++MDKF R+QGDY 
Sbjct: 419  QIELKRHGSEEDKGPVVLLVNACSSRDLKENVVGVCFVAQDVTGQKIVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +DE   CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           +TGQ TE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+ 
Sbjct: 539  GQNALTQLRIILNSSMTGQETEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLH 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHMLEQAAMKRLKALTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS  C++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKGLEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P+ + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPA-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG G+P  L++ M+N      + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPGLPEKLVQQMFNFDPD-MSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|218683837|gb|ACL00873.1| phytochrome B [Capparis frondosa]
          Length = 652

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/631 (68%), Positives = 511/631 (80%), Gaps = 14/631 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVGIVIDLEP+++ D ALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRIDVGIVIDLEPARTEDSALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V++LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRELTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-- 359
           I DCHA  V ++Q  EL QPLCLV STLR+PH CH QYM NMGS+ASL MAVIIN  D  
Sbjct: 121 IVDCHATTVRLVQDDELMQPLCLVGSTLRAPHECHAQYMANMGSLASLAMAVIINGSDEE 180

Query: 360 ---------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKN 410
                    SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A Q++EK 
Sbjct: 181 GTNVNSGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQVSEKR 240

Query: 411 ILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470
           +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + VGVTPTE+Q+KDI 
Sbjct: 241 VLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAAFLYQGKYYPVGVTPTEAQIKDIV 300

Query: 471 WWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKW 530
            WLL  HGD TGLSTDSLA+AGYP AA LG AVCGM  A IT +DFLFWFRSHTAKE+KW
Sbjct: 301 EWLLAYHGDSTGLSTDSLADAGYPSAAALGDAVCGMVVAYITKRDFLFWFRSHTAKEIKW 360

Query: 531 GGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE 590
           GGAKHHP+ KD+G +MHPRSSFKAFLEVVK+RS PWE +E++A+HSLQ+++RDS +E E 
Sbjct: 361 GGAKHHPQDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAVHSLQLILRDSIKESEA 420

Query: 591 ENDSKVQGNTQQNGSKM--QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            N SK    T Q G  M  QG+DELS++A EMVRLIETAT PIF VD  G INGWNAK+A
Sbjct: 421 TN-SKAVVQTHQPGGDMAVQGLDELSTIAREMVRLIETATVPIFAVDVDGHINGWNAKIA 479

Query: 649 ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
           ELTGL   EAMGKSL+ +++ +E + AV+  +  AL G EDKNVE+KL+ F  +     +
Sbjct: 480 ELTGLSVEEAMGKSLVHDLICKEYEEAVDKFLSHALRGVEDKNVEIKLKTFGPELHKRAL 539

Query: 709 YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
           +++VNAC+S+DY +N+ GVCFVGQD+T +K++MDKFI +QGDY+AII S +PLIPPIFA+
Sbjct: 540 FVVVNACSSKDYLDNIVGVCFVGQDVTGQKIVMDKFIHIQGDYKAIIHSPSPLIPPIFAA 599

Query: 769 DENACCSEWNAAMEKVTGWMRHEVIGITGQG 799
           DEN CC EWN AMEK+TGW R E+IG T  G
Sbjct: 600 DENTCCLEWNTAMEKLTGWSREEIIGRTLVG 630


>gi|410718140|gb|AFV79446.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718218|gb|AFV79485.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718268|gb|AFV79510.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718270|gb|AFV79511.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718278|gb|AFV79515.1| phytochrome N, partial [Pinus sylvestris]
          Length = 850

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/848 (52%), Positives = 584/848 (68%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ + L + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERLPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLRYACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY  
Sbjct: 121  GIQLNKEVELAAQIREKQILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEE 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+GVTPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + +   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSRKET-DGSGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ LI+ +V E S   V+ ++  AL G E++NV
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN-LVEETSAENVKRMLHLALQGVEEQNV 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            +++L++   ++    V +LVNAC+SRD K NV GVCFV QD+T +K++MDKF R+QGDY 
Sbjct: 419  QIELKRHGSEEDKGPVVLLVNACSSRDLKENVVGVCFVAQDVTGQKIVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +DE   CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           +TGQ TE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+ 
Sbjct: 539  GQNALTQLRIILNSSMTGQETEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLH 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHILEQAAMKRLKALTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS  C++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKGLEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P+ + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPA-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG G+P  L++ M+N      + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPGLPEKLVQQMFNFDPD-MSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|410718120|gb|AFV79436.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718166|gb|AFV79459.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718254|gb|AFV79503.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718264|gb|AFV79508.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718298|gb|AFV79525.1| phytochrome N, partial [Pinus sylvestris]
          Length = 850

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/848 (52%), Positives = 584/848 (68%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ + L + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERLPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLRYACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY  
Sbjct: 121  GIQLNKEVELAAQIREKQILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEE 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+GVTPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + +   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSRKET-DGSGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ LI+ +V E S   V+ ++  AL G E++NV
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN-LVEETSAENVKRMLHLALQGVEEQNV 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            +++L++   ++    V +LVNAC+SRD K NV GVCFV QD+T +K++MDKF R+QGDY 
Sbjct: 419  QIELKRHGSEEDKGPVVLLVNACSSRDLKENVVGVCFVAQDVTGQKIVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +DE   CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           +TGQ TE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+ 
Sbjct: 539  GQNALTQLRIILNSSMTGQETEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLH 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHMLEQAAMKRLKVLTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS  C++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKGLEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P+ + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPA-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG G+P  L++ M+N      + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPGLPEKLVQQMFNFDPD-MSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|410718214|gb|AFV79483.1| phytochrome N, partial [Pinus sylvestris]
          Length = 850

 Score =  907 bits (2343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/848 (52%), Positives = 584/848 (68%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ + L + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERLPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLRYACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY  
Sbjct: 121  GIQLNKEVELAAQIREKQILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEE 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+GVTPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + +   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSRKET-DGSGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ LI+ +V E S   V+ ++  AL G E++NV
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN-LVEETSAENVKRMLHLALQGVEEQNV 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            +++L++   ++    V +LVNAC+SRD K NV GVCFV QD+T +K++MDKF R+QGDY 
Sbjct: 419  QIELKRHGSEEDKGPVVLLVNACSSRDLKENVVGVCFVAQDVTGQKIVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +DE   CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           +TGQ TE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+ 
Sbjct: 539  GQNALTKLRIILNSSMTGQETEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLH 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHMLEQAAMKRLKVLTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS  C++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKGLEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P+ + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPA-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG G+P  L++ M+N      + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPGLPEKLVQQMFNFDPD-MSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|410718334|gb|AFV79543.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718338|gb|AFV79545.1| phytochrome N, partial [Pinus sylvestris]
          Length = 850

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/848 (52%), Positives = 584/848 (68%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ + L + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERLPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLRYACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY  
Sbjct: 121  GIQLNKEVELAAQIREKQILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEE 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+GVTPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + +   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSRKET-DGSGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ LI+ +V E S   V+ ++  AL G E++NV
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN-LVEETSAENVKRMLHLALQGVEEQNV 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            +++L++   ++    V +LVNAC+SRD K NV GVCFV QD+T +K++MDKF R+QGDY 
Sbjct: 419  QIELKRHGSEEDKGPVVLLVNACSSRDLKENVVGVCFVAQDVTGQKIVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +DE   CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           +TGQ TE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+ 
Sbjct: 539  GQNALTQLRIILNSSMTGQETEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLH 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHMLEQAAMKRLKVLTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS  C++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIESEEKGLEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P+ + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPA-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG G+P  L++ M+N      + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPGLPEKLVQQMFNFDPD-MSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|410718286|gb|AFV79519.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718294|gb|AFV79523.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718300|gb|AFV79526.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718302|gb|AFV79527.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718304|gb|AFV79528.1| phytochrome N, partial [Pinus sylvestris]
          Length = 850

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/848 (52%), Positives = 583/848 (68%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ + L + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERLPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLRYACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY  
Sbjct: 121  GIQLNKEVELAAQIREKQILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEE 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+GVTPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + +   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSRKET-DGSGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ L + +V E S   V+ ++  AL G E++NV
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPL-NNLVEETSAENVKRMLHLALQGVEEQNV 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            +++L++   ++    V +LVNAC+SRD K NV GVCFV QD+T +K++MDKF R+QGDY 
Sbjct: 419  QIELKRHGSEEDKGPVVLLVNACSSRDLKENVVGVCFVAQDVTGQKIVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +DE   CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           +TGQ TE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+ 
Sbjct: 539  GQNALTQLRIILNSSMTGQETEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLH 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHMLEQAAMKRLKALTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS  C++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKGLEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P+ + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPA-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG G+P  L++ M+N      + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPGLPEKLVQQMFNFDPD-MSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|410718132|gb|AFV79442.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718280|gb|AFV79516.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718312|gb|AFV79532.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718320|gb|AFV79536.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718322|gb|AFV79537.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718326|gb|AFV79539.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718340|gb|AFV79546.1| phytochrome N, partial [Pinus sylvestris]
          Length = 850

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/848 (52%), Positives = 583/848 (68%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ +   + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERSPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLRYACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY  
Sbjct: 121  GIQLNKEVELAAQIREKQILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEE 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+GVTPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + +   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSRKET-DGSGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ LI+ +V E S   V+ ++  AL G E++NV
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN-LVEETSAENVKRMLHLALQGVEEQNV 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            +++L++   ++    V +LVNAC+SRD K NV GVCFV QD+T +K++MDKF R+QGDY 
Sbjct: 419  QIELKRHGSEEDKGPVVLLVNACSSRDLKENVVGVCFVAQDVTGQKIVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +DE   CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           +TGQ TE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+ 
Sbjct: 539  GQNALTQLRIILNSSMTGQETEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLH 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHMLEQAAMKRLKALTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS  C++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKGLEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P+ + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPA-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG G+P  L++ M+N      + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPGLPEKLVQQMFNFDPD-MSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|406685543|gb|AFS51212.1| phytochrome P, partial [Podocarpus acutifolius]
          Length = 619

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/621 (71%), Positives = 505/621 (81%), Gaps = 21/621 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG------- 133
           AYLS++QRGG IQPFGC+LAVEE  F+II YS+N LEMLDL  +S    EL         
Sbjct: 1   AYLSRMQRGGTIQPFGCVLAVEETNFKIIAYSQNALEMLDLMPQSVPTMELGKHGGGEVL 60

Query: 134 LIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVID 193
            IG D RTLFT  S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+VID
Sbjct: 61  TIGTDVRTLFTASSARALEKAATAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVGMVID 118

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
           LEP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+
Sbjct: 119 LEPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMV 178

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VI
Sbjct: 179 YKFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVI 238

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKL 363
           QS+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL
Sbjct: 239 QSEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGPSGRSSMKL 298

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLL
Sbjct: 299 WGLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLL 358

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGL
Sbjct: 359 RDAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGL 418

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G
Sbjct: 419 STDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDG 478

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK R  PWE  E++AIHSLQ+++R SFQ++++   +K   + +  
Sbjct: 479 RRMHPRSSFKAFLEVVKRRGLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLT 537

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL
Sbjct: 538 DLKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSL 597

Query: 664 IDEVVHEESQGAVENLICRAL 684
           + +VV EES   +E ++ RAL
Sbjct: 598 VHDVVLEESAECLEKMLYRAL 618


>gi|410718346|gb|AFV79549.1| phytochrome N, partial [Pinus pinaster]
          Length = 850

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/848 (52%), Positives = 582/848 (68%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ + L + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERLPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLRYACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY G
Sbjct: 121  GIQLNKEVELAAQMREKRILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEG 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+G TPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGATPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + +   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSCKET-DGSGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ LI+ +V E S   V+ ++  AL G E++NV
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN-LVEETSAENVKRMLHLALQGVEEQNV 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            +++L++   ++    V +LVNAC+SRD K NV GVCFV QD+T +K +MDKF R+QGDY 
Sbjct: 419  QIELKRHGSEEDKGPVVLLVNACSSRDLKENVVGVCFVAQDVTGQKTVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +DE   CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           + GQ TE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+ 
Sbjct: 539  GQNALTQLRIILNSSMAGQETEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLH 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHMLEQAAMKRLKALTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS  C++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKELEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P  + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPG-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG G+P  L++ M+N  +   + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPGLPEKLVQQMFN-LDPDMSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|410718146|gb|AFV79449.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718170|gb|AFV79461.1| phytochrome N, partial [Pinus sylvestris]
 gi|410718174|gb|AFV79463.1| phytochrome N, partial [Pinus sylvestris]
          Length = 850

 Score =  905 bits (2338), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/848 (52%), Positives = 583/848 (68%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ + L + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERLPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLRYACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY  
Sbjct: 121  GIQLNKEVELAAQIREKQILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEE 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+GVTPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + +   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSRKET-DGSGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ LI+ +V E S   V+ ++  AL G E++NV
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN-LVEETSAENVKRMLHLALQGVEEQNV 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            +++L++   ++    V +LVNAC+SRD K NV GVCFV QD+T +K++MDKF R+QGDY 
Sbjct: 419  QIELKRHGSEEDKGPVVLLVNACSSRDLKENVVGVCFVAQDVTGQKIVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +D    CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDGCGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           +TGQ TE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+ 
Sbjct: 539  GQNALTQLRIILNSSMTGQETEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLH 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHMLEQAAMKRLKALTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS  C++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKGLEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P+ + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPA-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG G+P  L++ M+N      + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPGLPEKLVQQMFNFDPD-MSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|327241206|gb|AEA40447.1| phytochrome A [Amblyopyrum muticum]
          Length = 1130

 Score =  904 bits (2336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1113 (43%), Positives = 680/1113 (61%), Gaps = 78/1113 (7%)

Query: 38   IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISP-------PEGVPEEQITAYLSKIQRG 90
            ++     DA L  EFE+S     SF+YS+ V +         EG  E  I AYL  IQRG
Sbjct: 22   VLAQTTLDAELNTEFEES---NDSFDYSKLVEAQRDTPTVLQEGRSENAI-AYLQHIQRG 77

Query: 91   GLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLI-------GIDARTLF 143
              +Q FGC+LA++E +F ++ +SEN  EML   S +    + G++       G +  +LF
Sbjct: 78   KRLQSFGCLLALDEKSFNVVAFSENAPEMLTAVSHA----VPGVVDPPRLDMGTNVWSLF 133

Query: 144  TPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPA 203
            T     +L KA    ++SLLNPILV   +    KPFYAI+HR     V+D EP    +  
Sbjct: 134  TDQGATALHKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCFVVDFEPVNPTEFP 191

Query: 204  LSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGE 263
             + AGA+Q  KLA  AIS++QALPGG + LLC+T+V++V KL GYDRVM Y FH+D+HGE
Sbjct: 192  ATGAGALQPYKLAAKAISKIQALPGGSMELLCNTMVKEVFKLIGYDRVMAYKFHEDNHGE 251

Query: 264  VVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLC 323
            VV+EI +  LEPYLG+H+PA DIPQAAR +F + +VRMICD H   + VI+ + L   + 
Sbjct: 252  VVAEITKPGLEPYLGLHYPATDIPQAARCVFMKTKVRMICDVHTRSIKVIEDEALPFDIS 311

Query: 324  LVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMK---------------LWGLVV 368
            L  S LR+ H CHLQYM NM SIASL MAV++N  +                  LWGLVV
Sbjct: 312  LCGSALRAAHNCHLQYMENMSSIASLTMAVVVNENEEDDEVGSEQPAQQQQKKILWGLVV 371

Query: 369  CHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-P 427
            CHH SPRY+PFPLRYACEFL Q F++ +  E +V  QL EK+ILR Q +L  ML ++A P
Sbjct: 372  CHHESPRYVPFPLRYACEFLAQVFAVHVNKEFEVQKQLHEKSILRMQTILSGMLFKEASP 431

Query: 428  FSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDS 487
             +IV+ +P+IMDL+KCDGAAL YG + W +G  PTESQ++D+A WL   H D  GLST+S
Sbjct: 432  LTIVSGAPNIMDLIKCDGAALLYGDKLWHLGNAPTESQIRDLALWLSEVHMDSIGLSTES 491

Query: 488  LAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMH 547
            L +AGY GA+ LG  VCGMA A+I+S   LFWFRSH A+E++WGGAK+ P  +D+  +MH
Sbjct: 492  LHDAGYLGASALGDMVCGMAVAKISSNHILFWFRSHIAEEIRWGGAKNDPSDQDDSRRMH 551

Query: 548  PRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM 607
            PR SFKAFLEVVK +S  W  SE++AIHSLQ+++R +   + +    K   + Q    K+
Sbjct: 552  PRLSFKAFLEVVKMKSLAWTDSEMDAIHSLQLILRGTVDGVVKPT-GKASLDEQIGDLKL 610

Query: 608  QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
             G+ EL +V  EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +
Sbjct: 611  DGLAELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TL 669

Query: 668  VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGV 727
            V E S   V+ ++  AL G+E+K V  +++    ++    V ++VNAC SRD  ++V GV
Sbjct: 670  VEESSVSVVQRMLYLALQGKEEKEVRFEVKTHGPKRDDGPVILVVNACASRDLHDDVVGV 729

Query: 728  CFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGW 787
            CFV QD+T  K++MDKF R++GDY+AII + NPLIPPIF +DE   C EWNAAM K+TGW
Sbjct: 730  CFVAQDMTVHKLVMDKFTRVEGDYKAIIHNPNPLIPPIFGADEFGWCCEWNAAMTKLTGW 789

Query: 788  MRHEVI---------------------------------GITGQGTENFPFGFFNRQGQF 814
             + EV+                                  + G+ TE  PFGFFNR G++
Sbjct: 790  HKEEVLDKMLLGEVFDSRNASCLLKNKDAFVSLCAVINSALAGKETEKAPFGFFNRSGKY 849

Query: 815  VEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVK 874
             E  L+ +RR + +G + G FCF+ I   +LQ AL+ Q   +     ++K  +Y+R  + 
Sbjct: 850  TECLLSVNRRQNEDGLITGVFCFIHIPSHELQQALQVQQASEQASLKRLKAFSYMRHAIN 909

Query: 875  NPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSE 932
            NPL+G+ +  K L+++ ++E Q + +  SD C  Q+  I+  +D   I E +  ++L+  
Sbjct: 910  NPLSGMLYSRKALKNTDLNEEQMRQIHVSDNCHHQLNKILADLDQDSIMEKSSCLDLEMA 969

Query: 933  EFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRH 992
            EF L +++ A VSQV++    K + +  ++PE      + GD +RLQ +LSDFL   V+ 
Sbjct: 970  EFALQDVVVAAVSQVLIACEGKGIRVSCNLPERFMKKLIYGDGVRLQQILSDFLSISVKF 1029

Query: 993  APSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGL 1052
            +P   G +EI        I +    + +  R+ H G G+P+ L+  M+   +   + EGL
Sbjct: 1030 SPV-GGSIEISAKATKNSIGENLHLIDLDLRIKHHGLGVPAELMAQMFEEDDTQQSEEGL 1088

Query: 1053 GLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            GL +SR LL +MNG VR++RE     F++  EL
Sbjct: 1089 GLLVSRNLLRLMNGDVRHLREAGMSIFILTAEL 1121


>gi|410718258|gb|AFV79505.1| phytochrome N, partial [Pinus sylvestris]
          Length = 850

 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/848 (52%), Positives = 583/848 (68%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ + L + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERLPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLRYACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY  
Sbjct: 121  GIQLNKEVELAAQIREKQILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEE 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+GVTPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + +   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSRKET-DGSGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ LI+ +V E S   V+ ++  AL G E++NV
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN-LVEETSAENVKRMLHLALQGVEEQNV 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            +++L++   ++    V +LVNAC+SRD K NV GVCFV QD+T +K++MDKF R+QGDY 
Sbjct: 419  QIELKRHGSEEDKGPVVLLVNACSSRDLKENVVGVCFVAQDVTGQKIVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +DE   CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           +TGQ TE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+ 
Sbjct: 539  GQNALTQLRIILNSSMTGQETEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLH 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHMLEQAAMKRLKALTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS  C++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKGLEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P+ + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPA-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG  +P  L++ M+N      + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPWLPEKLVQQMFNFDPD-MSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|339778357|gb|AEK06060.1| phytochrome B2 [Populus balsamifera]
 gi|339778359|gb|AEK06061.1| phytochrome B2 [Populus balsamifera]
 gi|339778361|gb|AEK06062.1| phytochrome B2 [Populus balsamifera]
 gi|339778363|gb|AEK06063.1| phytochrome B2 [Populus balsamifera]
 gi|339778365|gb|AEK06064.1| phytochrome B2 [Populus balsamifera]
 gi|339778367|gb|AEK06065.1| phytochrome B2 [Populus balsamifera]
 gi|339778369|gb|AEK06066.1| phytochrome B2 [Populus balsamifera]
          Length = 1103

 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/633 (69%), Positives = 511/633 (80%), Gaps = 16/633 (2%)

Query: 39  IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
           I  Y  DA L A FEQS  +G+SF+YS+SV +  + VPE+QITAYLSKIQRGG IQPFGC
Sbjct: 8   IAQYTVDAQLHAVFEQSGGTGRSFDYSKSVRTTNQSVPEQQITAYLSKIQRGGHIQPFGC 67

Query: 99  MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           M+A +E +FR+I YSEN  +ML L  +S    E  E+   +G D R LF P S   L KA
Sbjct: 68  MIAADEQSFRVIAYSENAKDMLGLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKA 126

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
             +REI+LLNPI +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQK
Sbjct: 127 FGAREITLLNPIWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQK 184

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AIS+LQ+LPGGDI LLCDTVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLE
Sbjct: 185 LAVRAISQLQSLPGGDIKLLCDTVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLE 244

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PY+G+H+P+ DIPQA+RFLFKQNRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHG
Sbjct: 245 PYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHAIPVRVIQDEALMQPLCLVGSTLRAPHG 304

Query: 335 CHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYACE 386
           CH QYM NMGSIASL MAVII   D        SM+LWGLVVCHHTS R IPFPLRYACE
Sbjct: 305 CHAQYMENMGSIASLAMAVIIYGNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACE 364

Query: 387 FLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGA 446
           FL+QAF LQL MELQ+A QL EK++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGA
Sbjct: 365 FLMQAFGLQLNMELQLASQLLEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGA 424

Query: 447 ALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGM 506
           ALYY G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGM
Sbjct: 425 ALYYQGQYYPLGVTPTEAQIKDIVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGM 484

Query: 507 ATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPW 566
           A A I  +DFLFWFRSHTAKEVKWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PW
Sbjct: 485 AVAYIAERDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPW 544

Query: 567 EVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIET 626
           E +E++AIHSLQ+++RDSF++ E  N SK   +TQ    ++QG+DELSSVA EMVRLIET
Sbjct: 545 ENAEMDAIHSLQLILRDSFRDAEATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIET 603

Query: 627 ATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ATAPIF VD  G INGWNAKVAELTGL   EAM
Sbjct: 604 ATAPIFAVDVDGRINGWNAKVAELTGLSVEEAM 636



 Score =  326 bits (835), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 153/296 (51%), Positives = 219/296 (73%), Gaps = 3/296 (1%)

Query: 790  HEVIGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPAL 849
            H  IG  G  T+  PF FF+R  + V+  LTA++R + EG +IG FCF+QI  P+LQ  L
Sbjct: 799  HNAIG--GIDTDKLPFSFFDRNEKNVQTLLTANKRVNMEGDIIGAFCFLQIASPELQQTL 856

Query: 850  EAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQ 909
            + Q  ++   +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+Q
Sbjct: 857  KVQKQQEKKSFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQ 916

Query: 910  IMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKAL 969
            I+ II  +DL  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L
Sbjct: 917  ILKIIRDIDLESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTL 976

Query: 970  SLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGE 1029
            ++ GD+ R+Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +F++  PGE
Sbjct: 977  AVYGDQARIQQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFKIVCPGE 1036

Query: 1030 GIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            G+P  L++DM++  ++W T EGLGL + RK+L +MNG V+Y+RE+ +CYF++ LE+
Sbjct: 1037 GLPPELVQDMFHS-SRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLVVLEV 1091


>gi|410718148|gb|AFV79450.1| phytochrome N, partial [Pinus sylvestris]
          Length = 850

 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/848 (52%), Positives = 583/848 (68%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ + L + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERLPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLRYACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY  
Sbjct: 121  GIQLNKEVELAAQIREKQILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEE 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+GVTPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + +   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSRKET-DGSGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ LI+ +V E S   V+ ++  AL G E++NV
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN-LVEETSAENVKRMLHLALQGVEEQNV 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            +++L++   ++    V +LVNAC+SRD K NV GVCFV QD+T +K++MDKF R+QGDY 
Sbjct: 419  QIELKRHGSEEDKGPVVLLVNACSSRDLKENVVGVCFVAQDVTGQKIVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +DE   CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           +TGQ TE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+ 
Sbjct: 539  GQNALTQLRIILNSSMTGQETEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLH 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHMLEQAAMKRLKALTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS   ++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALFQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKGLEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P+ + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPA-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG G+P  L++ M+N      + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPGLPEKLVQQMFNFDPD-MSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|218683835|gb|ACL00872.1| phytochrome B [Capparis frondosa]
          Length = 652

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/631 (67%), Positives = 510/631 (80%), Gaps = 14/631 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVGIVIDLEP+++ D ALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLC TVVE 
Sbjct: 1   ILHRIDVGIVIDLEPARTEDSALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCGTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V++L GYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRELIGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-- 359
           I DCHA PV ++Q  EL QPLCLV STLR+PH CH QYM NMGS+ASL MAVIIN  D  
Sbjct: 121 IVDCHATPVRLVQDDELMQPLCLVGSTLRAPHECHAQYMANMGSLASLAMAVIINGSDEE 180

Query: 360 ---------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKN 410
                    SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A Q++EK 
Sbjct: 181 GTNVNSGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQVSEKR 240

Query: 411 ILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470
           +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ + +GVTPTE+Q+KDI 
Sbjct: 241 VLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAAFLYQGKYYPLGVTPTEAQIKDIV 300

Query: 471 WWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKW 530
            WLL  HGD TGL+TDSLA+AGYP AA LG AVCGM  A IT +DFLFWFRSHTAKE+KW
Sbjct: 301 EWLLAYHGDSTGLTTDSLADAGYPSAAALGDAVCGMVVAYITKRDFLFWFRSHTAKEIKW 360

Query: 531 GGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE 590
           GGAKHHP+ KD+G +MHPRSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDS +E E 
Sbjct: 361 GGAKHHPQDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSIKESEA 420

Query: 591 ENDSKVQGNTQQNGSKM--QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
            N SK    T Q G  M  QG+DELS++A EMVRLIETAT PIF VD  G INGWNAK+A
Sbjct: 421 TN-SKAVVQTHQPGGDMAVQGLDELSTIAREMVRLIETATVPIFAVDVDGHINGWNAKIA 479

Query: 649 ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
           ELTGL   EAMGKSL+ +++ +E + AV+  +  AL G EDKNVE+KL+ F  +     +
Sbjct: 480 ELTGLSVEEAMGKSLVHDLICKEYEEAVDKFLSHALRGVEDKNVEIKLKTFGPELHKRAL 539

Query: 709 YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
           +++VNAC+S+DY +N+ GVCFVGQD+T +K++MDKFI +QGDY+AII S +PLIPPIFA+
Sbjct: 540 FVVVNACSSKDYLDNIVGVCFVGQDVTGQKIVMDKFIHIQGDYKAIIHSPSPLIPPIFAA 599

Query: 769 DENACCSEWNAAMEKVTGWMRHEVIGITGQG 799
           DEN CC EWN AMEK+TGW R E+IG T  G
Sbjct: 600 DENTCCLEWNTAMEKLTGWSREEIIGRTLVG 630


>gi|410718128|gb|AFV79440.1| phytochrome N, partial [Pinus sylvestris]
          Length = 850

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/848 (52%), Positives = 583/848 (68%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ +   + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERSPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLR+ACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRHACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY  
Sbjct: 121  GIQLNKEVELAAQIREKQILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEE 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+GVTPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + +   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSRKET-DGSGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ LI+ +V E S   V+ ++  AL G E++NV
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN-LVEETSAENVKRMLHLALQGVEEQNV 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            +++L++   ++    V +LVNAC+SRD K NV GVCFV QD+T +K++MDKF R+QGDY 
Sbjct: 419  QIELKRHGSEEDKGPVVLLVNACSSRDLKENVVGVCFVAQDVTGQKIVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +DE   CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           +TGQ TE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+ 
Sbjct: 539  GQNALTQLRIILNSSMTGQETEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLH 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHMLEQAAMKRLKALTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS  C++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKGLEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P+ + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPA-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG G+P  L++ M+N      + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPGLPEKLVQQMFNFDPD-MSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|339778383|gb|AEK06073.1| phytochrome B2 [Populus balsamifera]
 gi|339778385|gb|AEK06074.1| phytochrome B2 [Populus balsamifera]
          Length = 1103

 Score =  902 bits (2332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/633 (69%), Positives = 510/633 (80%), Gaps = 16/633 (2%)

Query: 39  IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
           I  Y  DA L A FEQS  +G+SF+YS+SV +  + VPE+QITAYLSKIQRGG IQPFGC
Sbjct: 8   IAQYTVDAQLHAVFEQSGGTGRSFDYSKSVRTTNQSVPEQQITAYLSKIQRGGHIQPFGC 67

Query: 99  MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           M+A +E +FR+I YSEN  +ML L  +S    E  E+   +G D R LF P S   L KA
Sbjct: 68  MIAADEQSFRVIAYSENAKDMLGLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKA 126

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
             +REI+LLNPI +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQK
Sbjct: 127 FGAREITLLNPIWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQK 184

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AIS+LQ+LPGGDI LLCDTVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLE
Sbjct: 185 LAVRAISQLQSLPGGDIKLLCDTVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLE 244

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PY+G+H+P+ DIPQA+RFLFKQNRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHG
Sbjct: 245 PYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHAIPVRVIQDEALMQPLCLVGSTLRAPHG 304

Query: 335 CHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYACE 386
           CH QYM NMGSIASL MAVII   D        SM+LWGLVVCHHTS R IPFPLRYACE
Sbjct: 305 CHAQYMENMGSIASLAMAVIIYGNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACE 364

Query: 387 FLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGA 446
           FL+QAF LQL MELQ+A QL EK++LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGA
Sbjct: 365 FLMQAFGLQLNMELQLASQLLEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGA 424

Query: 447 ALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGM 506
           ALYY G+ + +GVTPTE Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGM
Sbjct: 425 ALYYQGQYYPLGVTPTEXQIKDIVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGM 484

Query: 507 ATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPW 566
           A A I  +DFLFWFRSHTAKEVKWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PW
Sbjct: 485 AVAYIAERDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPW 544

Query: 567 EVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIET 626
           E +E++AIHSLQ+++RDSF++ E  N SK   +TQ    ++QG+DELSSVA EMVRLIET
Sbjct: 545 ENAEMDAIHSLQLILRDSFRDAEATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIET 603

Query: 627 ATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ATAPIF VD  G INGWNAKVAELTGL   EAM
Sbjct: 604 ATAPIFAVDVDGRINGWNAKVAELTGLSVEEAM 636



 Score =  326 bits (835), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 153/296 (51%), Positives = 219/296 (73%), Gaps = 3/296 (1%)

Query: 790  HEVIGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPAL 849
            H  IG  G  T+  PF FF+R  + V+  LTA++R + EG +IG FCF+QI  P+LQ  L
Sbjct: 799  HNAIG--GIDTDKLPFSFFDRNEKNVQTLLTANKRVNMEGDIIGAFCFLQIASPELQQTL 856

Query: 850  EAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQ 909
            + Q  ++   +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+Q
Sbjct: 857  KVQKQQEKKSFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQ 916

Query: 910  IMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKAL 969
            I+ II  +DL  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L
Sbjct: 917  ILKIIRDIDLESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTL 976

Query: 970  SLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGE 1029
            ++ GD+ R+Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +F++  PGE
Sbjct: 977  AVYGDQARIQQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFKIVCPGE 1036

Query: 1030 GIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            G+P  L++DM++  ++W T EGLGL + RK+L +MNG V+Y+RE+ +CYF++ LE+
Sbjct: 1037 GLPPELVQDMFHS-SRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLVVLEV 1091


>gi|363547778|gb|AEW26930.1| phytochrome P [Macrozamia douglasii]
 gi|363547793|gb|AEW26937.1| phytochrome P [Macrozamia lucida]
 gi|363547800|gb|AEW26940.1| phytochrome P [Macrozamia moorei]
          Length = 590

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/598 (73%), Positives = 504/598 (84%), Gaps = 13/598 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S 
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSA 59

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            SL KAAA++EISL+NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AG
Sbjct: 60  LSLEKAAAAQEISLMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 116 AVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTSPRAVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG  W++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA 
Sbjct: 354 YYGGMVWVLGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAA 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE 
Sbjct: 414 ARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWEN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            E++AIHSLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EM RLIETAT
Sbjct: 474 VEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMARLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 533 APILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLCHALRG 590


>gi|363547808|gb|AEW26944.1| phytochrome P [Macrozamia plurinervia]
          Length = 590

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/598 (73%), Positives = 505/598 (84%), Gaps = 13/598 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S 
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSA 59

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            SL KAAA++EISL+NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AG
Sbjct: 60  LSLEKAAAAQEISLMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 116 AVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL++PLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRRPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTSPRAVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG  W++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA 
Sbjct: 354 YYGGMVWVLGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAA 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE 
Sbjct: 414 ARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWEN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            E++AIHSLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EMVRLIETAT
Sbjct: 474 VEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMVRLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 533 APILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLCHALRG 590


>gi|339778351|gb|AEK06057.1| phytochrome B2 [Populus balsamifera]
 gi|339778353|gb|AEK06058.1| phytochrome B2 [Populus balsamifera]
 gi|339778355|gb|AEK06059.1| phytochrome B2 [Populus balsamifera]
          Length = 1103

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/633 (69%), Positives = 511/633 (80%), Gaps = 16/633 (2%)

Query: 39  IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
           I  Y  DA L A FEQS  +G+SF+YS+SV +  + VPE+QITAYLSKIQRGG IQPFGC
Sbjct: 8   IAQYTVDAQLHAVFEQSGGTGRSFDYSKSVRTTNQSVPEQQITAYLSKIQRGGHIQPFGC 67

Query: 99  MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           M+A +E +FR+I YSEN  +ML L  +S    E  E+   +G D R LF P S   L KA
Sbjct: 68  MIAADEQSFRVIAYSENAKDMLGLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKA 126

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
             +REI+LLNPI +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQK
Sbjct: 127 FGAREITLLNPIWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQK 184

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AIS+LQ+LPGGDI LLCDTVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLE
Sbjct: 185 LAVRAISQLQSLPGGDIKLLCDTVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLE 244

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PY+G+H+P+ DIPQA+RFLFKQNRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHG
Sbjct: 245 PYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHAIPVRVIQDEALMQPLCLVGSTLRAPHG 304

Query: 335 CHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYACE 386
           CH QYM NMGSIASL MAVII   D        SM+LWGLVVCHHTS R IPFPLRYACE
Sbjct: 305 CHAQYMENMGSIASLAMAVIIYGNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACE 364

Query: 387 FLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGA 446
           FL+QAF LQL MELQ+A QL EK++LRTQ LLCDMLLR++P  IVTQSPSIMDLVKCDGA
Sbjct: 365 FLMQAFGLQLNMELQLASQLLEKHVLRTQTLLCDMLLRESPTGIVTQSPSIMDLVKCDGA 424

Query: 447 ALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGM 506
           ALYY G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGM
Sbjct: 425 ALYYQGQYYPLGVTPTEAQIKDIVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGM 484

Query: 507 ATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPW 566
           A A I  +DFLFWFRSHTAKEVKWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PW
Sbjct: 485 AVAYIAERDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPW 544

Query: 567 EVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIET 626
           E +E++AIHSLQ+++RDSF++ E  N SK   +TQ    ++QG+DELSSVA EMVRLIET
Sbjct: 545 ENAEMDAIHSLQLILRDSFRDAEATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIET 603

Query: 627 ATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ATAPIF VD  G INGWNAKVAELTGL   EAM
Sbjct: 604 ATAPIFAVDVDGRINGWNAKVAELTGLSVEEAM 636



 Score =  326 bits (836), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 153/296 (51%), Positives = 219/296 (73%), Gaps = 3/296 (1%)

Query: 790  HEVIGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPAL 849
            H  IG  G  T+  PF FF+R  + V+  LTA++R + EG +IG FCF+QI  P+LQ  L
Sbjct: 799  HNAIG--GIDTDKLPFSFFDRNEKNVQTLLTANKRVNMEGDIIGAFCFLQIASPELQQTL 856

Query: 850  EAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQ 909
            + Q  ++   +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+Q
Sbjct: 857  KVQKQQEKKSFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQ 916

Query: 910  IMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKAL 969
            I+ II  +DL  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L
Sbjct: 917  ILKIIRDIDLESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTL 976

Query: 970  SLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGE 1029
            ++ GD+ R+Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +F++  PGE
Sbjct: 977  AVYGDQARIQQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFKIVCPGE 1036

Query: 1030 GIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            G+P  L++DM++  ++W T EGLGL + RK+L +MNG V+Y+RE+ +CYF++ LE+
Sbjct: 1037 GLPPELVQDMFHS-SRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLVVLEV 1091


>gi|363547786|gb|AEW26934.1| phytochrome P [Macrozamia fraseri]
          Length = 590

 Score =  902 bits (2330), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/598 (73%), Positives = 505/598 (84%), Gaps = 13/598 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S 
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSA 59

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            SL KAAA++EISL+NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AG
Sbjct: 60  LSLEKAAAAQEISLMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++L+GYDRVM+Y FH+D+HGEVV+EI
Sbjct: 116 AVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELSGYDRVMVYRFHEDEHGEVVAEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTSPRAVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG  W++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA 
Sbjct: 354 YYGGMVWVLGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAA 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE 
Sbjct: 414 ARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWEN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            E++AIHSLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EMVRLIETAT
Sbjct: 474 VEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMVRLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 533 APILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESTETVERLLCHALRG 590


>gi|363547820|gb|AEW26950.1| phytochrome P [Macrozamia stenomera]
          Length = 590

 Score =  900 bits (2327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/598 (73%), Positives = 505/598 (84%), Gaps = 13/598 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S 
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSA 59

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            SL KAAA++EISL+NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AG
Sbjct: 60  LSLEKAAAAQEISLMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 116 AVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL++PLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRRPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTSPRAVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG  W++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGY GAA LG AVCGMA 
Sbjct: 354 YYGGMVWVLGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYSGAASLGDAVCGMAA 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE 
Sbjct: 414 ARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWEN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            E++AIHSLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EMVRLIETAT
Sbjct: 474 VEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMVRLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES  AVE L+C AL G
Sbjct: 533 APILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMEAVERLLCHALRG 590


>gi|339778371|gb|AEK06067.1| phytochrome B2 [Populus balsamifera]
 gi|339778373|gb|AEK06068.1| phytochrome B2 [Populus balsamifera]
 gi|339778375|gb|AEK06069.1| phytochrome B2 [Populus balsamifera]
 gi|339778379|gb|AEK06071.1| phytochrome B2 [Populus balsamifera]
 gi|339778381|gb|AEK06072.1| phytochrome B2 [Populus balsamifera]
          Length = 1103

 Score =  900 bits (2327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/633 (69%), Positives = 510/633 (80%), Gaps = 16/633 (2%)

Query: 39  IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
           I  Y  DA L A FEQS  +G+SF+YS+SV +  + VPE+QITAYLSKIQRGG IQPFGC
Sbjct: 8   IAQYTVDAQLHAVFEQSGGTGRSFDYSKSVRTTNQSVPEQQITAYLSKIQRGGHIQPFGC 67

Query: 99  MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           M+A +E +FR+I YSEN  +ML L  +S    E  E+   +G D R LF P S   L KA
Sbjct: 68  MIAADEQSFRVIAYSENAKDMLGLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKA 126

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
             +REI+LLNPI +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQK
Sbjct: 127 FGAREITLLNPIWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQK 184

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AIS+LQ+LPGGDI LLCDTVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLE
Sbjct: 185 LAVRAISQLQSLPGGDIKLLCDTVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLE 244

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PY+G+H+P+ DIPQA+RFLFKQNRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHG
Sbjct: 245 PYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHAIPVRVIQDEALMQPLCLVGSTLRAPHG 304

Query: 335 CHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYACE 386
           CH QYM NMGSIASL MAVII   D        SM+LWGLVVCHHTS R IPFPLRYACE
Sbjct: 305 CHAQYMENMGSIASLAMAVIIYGNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACE 364

Query: 387 FLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGA 446
           FL+QAF LQL MELQ+A QL EK++LRTQ LLCDMLLR +P  IVTQSPSIMDLVKCDGA
Sbjct: 365 FLMQAFGLQLNMELQLASQLLEKHVLRTQTLLCDMLLRXSPTGIVTQSPSIMDLVKCDGA 424

Query: 447 ALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGM 506
           ALYY G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGM
Sbjct: 425 ALYYQGQYYPLGVTPTEAQIKDIVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGM 484

Query: 507 ATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPW 566
           A A I  +DFLFWFRSHTAKEVKWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PW
Sbjct: 485 AVAYIAERDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPW 544

Query: 567 EVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIET 626
           E +E++AIHSLQ+++RDSF++ E  N SK   +TQ    ++QG+DELSSVA EMVRLIET
Sbjct: 545 ENAEMDAIHSLQLILRDSFRDAEATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIET 603

Query: 627 ATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ATAPIF VD  G INGWNAKVAELTGL   EAM
Sbjct: 604 ATAPIFAVDVDGRINGWNAKVAELTGLSVEEAM 636



 Score =  326 bits (836), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 153/296 (51%), Positives = 219/296 (73%), Gaps = 3/296 (1%)

Query: 790  HEVIGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPAL 849
            H  IG  G  T+  PF FF+R  + V+  LTA++R + EG +IG FCF+QI  P+LQ  L
Sbjct: 799  HNAIG--GIDTDKLPFSFFDRNEKNVQTLLTANKRVNMEGDIIGAFCFLQIASPELQQTL 856

Query: 850  EAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQ 909
            + Q  ++   +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+Q
Sbjct: 857  KVQKQQEKKSFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQ 916

Query: 910  IMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKAL 969
            I+ II  +DL  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L
Sbjct: 917  ILKIIRDIDLESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTL 976

Query: 970  SLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGE 1029
            ++ GD+ R+Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +F++  PGE
Sbjct: 977  AVYGDQARIQQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFKIVCPGE 1036

Query: 1030 GIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            G+P  L++DM++  ++W T EGLGL + RK+L +MNG V+Y+RE+ +CYF++ LE+
Sbjct: 1037 GLPPELVQDMFHS-SRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLVVLEV 1091


>gi|218683869|gb|ACL00889.1| phytochrome B [Pachycladon stellatum]
          Length = 654

 Score =  900 bits (2327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/627 (67%), Positives = 504/627 (80%), Gaps = 14/627 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGY RVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRDLTGYHRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA PV+V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN     
Sbjct: 121 IVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEED 180

Query: 358 -------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKN 410
                  + SM+LWGLVVCHHTS   IPFPLRYACEFL+QAF LQL MELQ+A+Q++E  
Sbjct: 181 GSNVASGRSSMRLWGLVVCHHTSSHCIPFPLRYACEFLMQAFGLQLNMELQLALQMSETR 240

Query: 411 ILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470
           +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y G+ +L+GV P+E Q+ DI 
Sbjct: 241 VLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYLLGVAPSEVQINDIV 300

Query: 471 WWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKW 530
            WLL NH D T LSTDSL +AGYP AA LG AVCGMA A IT +DFLFWFRSHT KE+KW
Sbjct: 301 EWLLANHSDSTRLSTDSLGDAGYPRAAALGDAVCGMAVAYITKRDFLFWFRSHTGKEIKW 360

Query: 531 GGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE 590
           GGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS P E + ++AIHSLQ+++RDSF+E E 
Sbjct: 361 GGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPRETAGMDAIHSLQLILRDSFKESEA 420

Query: 591 ENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
             +SK      Q    M   QG+DEL +VA EMVRLIETAT PIF VDS G INGWNAK+
Sbjct: 421 AMNSKTVDGAVQPYRDMVGEQGIDELGAVAREMVRLIETATVPIFAVDSGGCINGWNAKI 480

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
           AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+EDKNVE+KL+ F  + Q   
Sbjct: 481 AELTGLSVEEAMGKSLVSDLIYKENEETVNKLLSRALRGDEDKNVEVKLKTFSPELQGKA 540

Query: 708 VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFA 767
           V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA
Sbjct: 541 VFVVVNACSSKDYLNNIVGVCFVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFA 600

Query: 768 SDENACCSEWNAAMEKVTGWMRHEVIG 794
           +DEN CC EWN AMEK+ GW R EVIG
Sbjct: 601 ADENTCCLEWNTAMEKLMGWSRSEVIG 627


>gi|363547816|gb|AEW26948.1| phytochrome P [Macrozamia serpentina]
          Length = 590

 Score =  900 bits (2327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/598 (73%), Positives = 503/598 (84%), Gaps = 13/598 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S 
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSA 59

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            SL KAAA++EISL+NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AG
Sbjct: 60  LSLEKAAAAQEISLMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 116 AVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHT PR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTCPRAVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG  W++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA 
Sbjct: 354 YYGGMVWVLGVTPAEAQIKDIAGWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAA 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE 
Sbjct: 414 ARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWEN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            E++AIHSLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EM RLIETAT
Sbjct: 474 VEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMARLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 533 APILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLCHALRG 590


>gi|363547784|gb|AEW26933.1| phytochrome P [Macrozamia flexuosa]
          Length = 590

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/598 (73%), Positives = 505/598 (84%), Gaps = 13/598 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S 
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSA 59

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            SL KAAA++EISL+NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AG
Sbjct: 60  LSLEKAAAAQEISLMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LPGGDIGLLCDTVV+DV++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 116 AVQSQKLAVRAISRLQSLPGGDIGLLCDTVVKDVRELTGYDRVMVYRFHEDEHGEVVAEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL++PLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRRPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTSPRAVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG  W++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA 
Sbjct: 354 YYGGMVWVLGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAA 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE 
Sbjct: 414 ARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWEN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            E++AIHSLQ+V+R SFQ++ +++++K   +++ N  K+Q +DELSSVA EMVRLIETAT
Sbjct: 474 VEMDAIHSLQLVLRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMVRLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 533 APILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLCHALRG 590


>gi|363547776|gb|AEW26929.1| phytochrome P [Macrozamia diplomera]
 gi|363547788|gb|AEW26935.1| phytochrome P [Macrozamia glaucophylla]
 gi|363547804|gb|AEW26942.1| phytochrome P [Macrozamia pauli-guilielmi]
 gi|363547806|gb|AEW26943.1| phytochrome P [Macrozamia platyrhachis]
          Length = 590

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/598 (73%), Positives = 503/598 (84%), Gaps = 13/598 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S 
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSA 59

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            SL KAAA++EIS +NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AG
Sbjct: 60  LSLEKAAAAQEISFMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 116 AVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTSPRAVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG  W++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA 
Sbjct: 354 YYGGMVWVLGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAA 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE 
Sbjct: 414 ARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWEN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            E++AIHSLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EM RLIETAT
Sbjct: 474 VEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMARLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 533 APILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLCHALRG 590


>gi|339778377|gb|AEK06070.1| phytochrome B2 [Populus balsamifera]
          Length = 1103

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/633 (69%), Positives = 510/633 (80%), Gaps = 16/633 (2%)

Query: 39  IDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGC 98
           I  Y  DA L A FEQS  +G+SF+YS+SV +  + VPZ+QITAYLSKIQRGG IQPFGC
Sbjct: 8   IAQYTVDAQLHAVFEQSGGTGRSFDYSKSVRTTNQSVPZQQITAYLSKIQRGGHIQPFGC 67

Query: 99  MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           M+A +E +FR+I YSEN  +ML L  +S    E  E+   +G D R LF P S   L KA
Sbjct: 68  MIAADEQSFRVIAYSENAKDMLGLTPQSVPSLEKQEIL-FVGADVRILFRPSSAVLLEKA 126

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
             +REI+LLNPI +HS +    KPFYAILHRIDVGIVIDLEP+++ DPALS+AGAVQSQK
Sbjct: 127 FGAREITLLNPIWIHSKNSG--KPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQK 184

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AIS+LQ+LPGGDI LLCDTVV+ V++LTGYDRVM+Y FH+D+HGEVV+E +R DLE
Sbjct: 185 LAVRAISQLQSLPGGDIKLLCDTVVDSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLE 244

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PY+G+H+P+ DIPQA+RFLFKQNRVRMI DCHAIPV VIQ + L QPLCLV STLR+PHG
Sbjct: 245 PYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHAIPVRVIQDEALMQPLCLVGSTLRAPHG 304

Query: 335 CHLQYMTNMGSIASLVMAVIINSKD--------SMKLWGLVVCHHTSPRYIPFPLRYACE 386
           CH QYM NMGSIASL MAVII   D        SM+LWGLVVCHHTS R IPFPLRYACE
Sbjct: 305 CHAQYMENMGSIASLAMAVIIYGNDEEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACE 364

Query: 387 FLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGA 446
           FL+QAF LQL MELQ+A QL EK++LRTQ LLCDMLLR +P  IVTQSPSIMDLVKCDGA
Sbjct: 365 FLMQAFGLQLNMELQLASQLLEKHVLRTQTLLCDMLLRXSPTGIVTQSPSIMDLVKCDGA 424

Query: 447 ALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGM 506
           ALYY G+ + +GVTPTE+Q+KDI  WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGM
Sbjct: 425 ALYYQGQYYPLGVTPTEAQIKDIVEWLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGM 484

Query: 507 ATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPW 566
           A A I  +DFLFWFRSHTAKEVKWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PW
Sbjct: 485 AVAYIAERDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPW 544

Query: 567 EVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIET 626
           E +E++AIHSLQ+++RDSF++ E  N SK   +TQ    ++QG+DELSSVA EMVRLIET
Sbjct: 545 ENAEMDAIHSLQLILRDSFRDAEATN-SKAVVHTQLKDMELQGMDELSSVAREMVRLIET 603

Query: 627 ATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ATAPIF VD  G INGWNAKVAELTGL   EAM
Sbjct: 604 ATAPIFAVDVDGRINGWNAKVAELTGLSVEEAM 636



 Score =  326 bits (835), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 153/296 (51%), Positives = 219/296 (73%), Gaps = 3/296 (1%)

Query: 790  HEVIGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPAL 849
            H  IG  G  T+  PF FF+R  + V+  LTA++R + EG +IG FCF+QI  P+LQ  L
Sbjct: 799  HNAIG--GIDTDKLPFSFFDRNEKNVQTLLTANKRVNMEGDIIGAFCFLQIASPELQQTL 856

Query: 850  EAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQ 909
            + Q  ++   +A++KELAYI QE+KNPL+GI F + LLE++ ++E+Q+Q+LETS ACE+Q
Sbjct: 857  KVQKQQEKKSFARMKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQ 916

Query: 910  IMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKAL 969
            I+ II  +DL  IE G++EL+  EFLLG++++AVVSQ M+LLR++NL LL DIPEEIK L
Sbjct: 917  ILKIIRDIDLESIENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTL 976

Query: 970  SLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGE 1029
            ++ GD+ R+Q VL+DFL  +VR+APS  GWVEI V P LK I D    VH +F++  PGE
Sbjct: 977  AVYGDQARIQQVLADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFKIVCPGE 1036

Query: 1030 GIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085
            G+P  L++DM++  ++W T EGLGL + RK+L +MNG V+Y+RE+ +CYF++ LE+
Sbjct: 1037 GLPPELVQDMFHS-SRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLVVLEV 1091


>gi|218683893|gb|ACL00901.1| phytochrome B [Stanleya pinnata]
          Length = 633

 Score =  899 bits (2323), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/606 (69%), Positives = 496/606 (81%), Gaps = 13/606 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E RR DLEPYLG+H+PA DIPQA+RFLFKQNRVRMI DCHA PV+V+Q   L Q 
Sbjct: 61  GEVVAESRRDDLEPYLGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVLVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCH 370
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN            + SM+LWGLVVCH
Sbjct: 121 MCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEEDGSNVAGGRSSMRLWGLVVCH 180

Query: 371 HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
           HTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LRTQ LLCDMLLRD+P  I
Sbjct: 181 HTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRVLRTQTLLCDMLLRDSPAGI 240

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           VTQSPSIMDLVKCDGAA  Y G+ + +GV PTE+Q+KD+  WLL NH D TGLSTDSL +
Sbjct: 241 VTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPTEAQIKDVVEWLLANHADSTGLSTDSLGD 300

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRS
Sbjct: 301 AGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRS 360

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM--Q 608
           SFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E   +SK      Q  S    Q
Sbjct: 361 SFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKTADGAIQPCSMAGEQ 420

Query: 609 GVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVV 668
           G+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+ +++
Sbjct: 421 GIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLI 480

Query: 669 HEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVC 728
           ++E++  V+ LI RAL G+EDKNVE+KL+ F  + Q   V+++VNAC+S+DY NN+ GVC
Sbjct: 481 YKENEETVDKLIARALKGDEDKNVEIKLKTFSPELQGKAVFVVVNACSSKDYSNNIVGVC 540

Query: 729 FVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWM 788
           FVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+DEN CC EWN AMEK+TGW 
Sbjct: 541 FVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWS 600

Query: 789 RHEVIG 794
           R EVIG
Sbjct: 601 RSEVIG 606


>gi|218683915|gb|ACL00912.1| phytochrome D [Draba altaica]
          Length = 655

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/628 (67%), Positives = 508/628 (80%), Gaps = 15/628 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHR+DVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA PV V++   L Q +CLV STLRSPHGCH QYM NMGSIASL MAVIIN     
Sbjct: 121 IVDCHASPVRVVKGDRLTQSICLVGSTLRSPHGCHAQYMANMGSIASLAMAVIINGNEED 180

Query: 358 --------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEK 409
                   ++SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK
Sbjct: 181 GNGVNTGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLALQVSEK 240

Query: 410 NILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDI 469
            +LR Q LLCDMLLRD+P  IVTQSPSIMDLVKC+GAA  Y G+ + +GV P+E+Q+ DI
Sbjct: 241 RVLRMQTLLCDMLLRDSPAGIVTQSPSIMDLVKCNGAAFLYQGKYYSLGVAPSEAQINDI 300

Query: 470 AWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVK 529
             WLL NH D TGLSTDSL +AGYP AA LG AVCGMA A IT +DFLFWFRSHT KE+K
Sbjct: 301 VEWLLANHSDSTGLSTDSLVDAGYPKAAALGNAVCGMAVAYITKRDFLFWFRSHTEKEIK 360

Query: 530 WGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME 589
           WGGAKHHPE KD+G +MHPRSSFKAFLEVVK+R  PWE +E++AIHSLQ+++RDSF+E E
Sbjct: 361 WGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRCQPWETAEMDAIHSLQLILRDSFKESE 420

Query: 590 E-ENDSKVQGNTQQNGSKM--QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAK 646
             ++ S   G  Q +  +M  QG+ E+ +VA EMVRLIETAT PIF VD  G +NGWNAK
Sbjct: 421 AMDSKSAAAGAVQPHDQEMAEQGLKEVGAVAREMVRLIETATVPIFAVDMDGCVNGWNAK 480

Query: 647 VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706
           +AELTGL   +AMGKSL+ +++H+E +  V+ L+ RAL G+E KNVE+KL+ F  + Q  
Sbjct: 481 IAELTGLSVEDAMGKSLVRDLIHKEYEETVDRLLSRALKGDEGKNVEVKLKTFGSELQAK 540

Query: 707 VVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIF 766
            V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +Q DY+AII S NPLIPPIF
Sbjct: 541 AVFVVVNACSSKDYLNNIVGVCFVGQDVTGQKIVMDKFINIQRDYKAIIHSPNPLIPPIF 600

Query: 767 ASDENACCSEWNAAMEKVTGWMRHEVIG 794
           A+DEN CC EWNAAMEK+TGW R EVIG
Sbjct: 601 AADENTCCLEWNAAMEKLTGWPRSEVIG 628


>gi|363547798|gb|AEW26939.1| phytochrome P [Macrozamia montana]
          Length = 590

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/598 (73%), Positives = 503/598 (84%), Gaps = 13/598 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGCMLAV E TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S 
Sbjct: 2   IQPFGCMLAVGERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSA 59

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            SL KAAA++EISL+NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AG
Sbjct: 60  LSLEKAAAAQEISLMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 116 AVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTSPRAVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG  W++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA 
Sbjct: 354 YYGGMVWVLGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAA 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE 
Sbjct: 414 ARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWEN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            E++AIHSLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EM RLIETAT
Sbjct: 474 VEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMARLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 533 APILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLCHALRG 590


>gi|363547780|gb|AEW26931.1| phytochrome P [Macrozamia dyeri]
          Length = 590

 Score =  898 bits (2321), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/598 (73%), Positives = 502/598 (83%), Gaps = 13/598 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S 
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSA 59

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            SL KAAA++EIS +NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AG
Sbjct: 60  LSLEKAAAAQEISFMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LPGGDIGLLCDT VEDV++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 116 AVQSQKLAVGAISRLQSLPGGDIGLLCDTAVEDVRELTGYDRVMVYRFHEDEHGEVVAEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTSPRAVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG  W++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA 
Sbjct: 354 YYGGMVWVLGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAA 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE 
Sbjct: 414 ARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWEN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            E++AIHSLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EM RLIETAT
Sbjct: 474 VEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMARLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 533 APILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLCHALRG 590


>gi|326489438|dbj|BAK01700.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1089

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/1043 (45%), Positives = 656/1043 (62%), Gaps = 59/1043 (5%)

Query: 97   GCMLAVEEPTFRIIGYSENCLEMLDLRSR---SEDFELNGLIGIDARTLFTPPSGASLAK 153
            GC+LA++E +F +I +SEN  EML   S    S D      IG + R+LFT     +L K
Sbjct: 43   GCLLALDEKSFNVIAFSENAPEMLTTVSHAVPSVDDPPRLDIGTNVRSLFTEQGATALHK 102

Query: 154  AAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQ 213
            A    ++SLLNP LV   +    KPFYAI+HR    +V+D EP    +   + AGA+QS 
Sbjct: 103  ALGFADVSLLNPFLVQCKTSG--KPFYAIVHRATGCLVVDFEPVNPTEFPATAAGALQSY 160

Query: 214  KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL 273
            KLA  AIS++QALPGG + LLC+TVV++V +LTGYDRVM Y FH+D+HGEV +EI +  L
Sbjct: 161  KLAAKAISKIQALPGGSMELLCNTVVKEVFELTGYDRVMAYKFHEDNHGEVFAEITKPGL 220

Query: 274  EPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPH 333
            EPYLG+H+PA DIPQAARFLF +N+VRMICD  A  + VI+ + L   + L  S+LR+ H
Sbjct: 221  EPYLGLHYPATDIPQAARFLFMKNKVRMICDVRARTLKVIEDEALPFDISLCGSSLRAAH 280

Query: 334  GCHLQYMTNMGSIASLVMAVIIN---------------SKDSMKLWGLVVCHHTSPRYIP 378
             CHLQYM NM SIASLVMAV++N                +    LWGLVVCHH SPRY+P
Sbjct: 281  SCHLQYMENMNSIASLVMAVVVNESEEDDEAESEQPAQQQKKKILWGLVVCHHESPRYVP 340

Query: 379  FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVTQSPSI 437
            FPLRYACEFL Q F++ +  E +V  QL EK+ILR Q +L DML ++A P +IV+ +P+I
Sbjct: 341  FPLRYACEFLAQVFAVHVNKEFEVQKQLREKSILRMQTILSDMLFKEASPLTIVSGTPNI 400

Query: 438  MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
            MDL+KCDGAAL YG + W +G  PTESQ++ IA WL   H D TGLST+SL +AGYPGA+
Sbjct: 401  MDLIKCDGAALLYGDKVWRLGNAPTESQIRHIALWLSEVHMDSTGLSTESLHDAGYPGAS 460

Query: 498  LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
             LG  VCG+A A+I S D LFWFRSHTA+E++WGGAK+ P  +D+  +MHPR SFKAFLE
Sbjct: 461  ALGDMVCGIAVAKINSNDILFWFRSHTAEEIRWGGAKNDPSDQDDSRRMHPRLSFKAFLE 520

Query: 558  VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVA 617
            VVK +S  W   E++AIHSLQ+++R +  ++ +    K   + Q    K+ G+ EL +V 
Sbjct: 521  VVKMKSLAWSDYEMDAIHSLQLILRGALDDVAKPT-GKASLDEQIGDLKLDGIAELQAVT 579

Query: 618  CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
             EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V E S   V+
Sbjct: 580  SEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEESSVPVVQ 638

Query: 678  NLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737
             ++  AL G+E+K V   ++    ++    V ++VNAC SRD  ++V GVCFV QD+T  
Sbjct: 639  RMLYLALQGKEEKEVRFDMKTHGPKRDDGPVILVVNACASRDLHDDVVGVCFVAQDMTVH 698

Query: 738  KVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI---- 793
            K++MDKF R++GDY AI+ + NPLIPPIF +DE   CSEWNAAM K+TGW R EV+    
Sbjct: 699  KLVMDKFTRVKGDYMAIVHNPNPLIPPIFGADEFGWCSEWNAAMTKLTGWHREEVLDKML 758

Query: 794  -----------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRR 824
                                          + G+ TE  PFGFF+R G++ E  L+ + R
Sbjct: 759  LGEVFDSSNASCLLKNKDAFVGLCVLINSALAGEETEKAPFGFFDRSGKYTECLLSVNSR 818

Query: 825  TDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVH 884
             + +G + G FCF+ I   +LQ AL+ Q   +     ++K  +Y+R  + NPL+G+ +  
Sbjct: 819  ANEDGLITGVFCFIHIPSHELQQALQVQQASEQASLRRLKAFSYMRHAINNPLSGMLYSR 878

Query: 885  KLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGN--MELKSEEFLLGNILDA 942
            K L+++ ++E Q + +  SD C  Q+  I+  +D   I E +  ++L+  EF+L +++ A
Sbjct: 879  KALKNTDLNEEQMRQIHVSDNCHHQLNKILADLDQDNIMENSSCLDLEMAEFVLQDVVVA 938

Query: 943  VVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEI 1002
             VSQV++  + K + +  ++PE      + GD IRLQ +LSDFL   V+ +P   G VEI
Sbjct: 939  AVSQVLIACQGKGIRISCNLPERFMKQLVYGDGIRLQQILSDFLSISVKFSPV-GGSVEI 997

Query: 1003 KVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLI 1062
                    I +    + ++ R+ H G G+P+ L+  M+   N   + EGLGL +SR LL 
Sbjct: 998  SAQATKNSIGENLHLIDLELRIKHRGLGVPAELMAQMFEEENTEQSEEGLGLLVSRNLLR 1057

Query: 1063 MMNGRVRYVRENSKCYFVIDLEL 1085
            +MNG VR++RE     F++  EL
Sbjct: 1058 LMNGDVRHLREAGMSIFILTAEL 1080


>gi|410718272|gb|AFV79512.1| phytochrome N, partial [Pinus sylvestris]
          Length = 850

 Score =  897 bits (2318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/848 (52%), Positives = 574/848 (67%), Gaps = 49/848 (5%)

Query: 285  DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMG 344
            DIPQA+RFLF +NRVRMICDC+A PV VIQ + L + L    STLR+PHGCH QYM NMG
Sbjct: 1    DIPQASRFLFMRNRVRMICDCYAQPVAVIQDERLPRDLSFCGSTLRAPHGCHAQYMANMG 60

Query: 345  SIASLVMAVIINSKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            SIASLVMAV+IN K+              +LWGLVVCHHTSPRY+PFPLRYACEFL+Q F
Sbjct: 61   SIASLVMAVVINEKELDGDSEGQMQQKGRRLWGLVVCHHTSPRYVPFPLRYACEFLMQVF 120

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             +QL  E+++A Q+ EK ILRTQ LLCDMLLRD P  IVTQ P+IMDLV+CDGAALYY  
Sbjct: 121  GIQLNKEVELAAQIREKQILRTQTLLCDMLLRDTPLGIVTQKPNIMDLVRCDGAALYYEE 180

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
              WL+GVTPTE+Q++DI  WL  +H D TGLSTDSL  AGYPGA  LG AVCG+A  RI 
Sbjct: 181  NFWLLGVTPTEAQIQDIVAWLSEHHMDSTGLSTDSLVYAGYPGAESLGNAVCGIAAVRIN 240

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
            SKDFLFWFRSHTAKE+KWGGAKH  + +D+G KMHPRSSF AFLEVVK RS  WE  E++
Sbjct: 241  SKDFLFWFRSHTAKEIKWGGAKHDLQERDDGKKMHPRSSFNAFLEVVKMRSLSWEDVEMD 300

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            AIHSLQ+++R S +E  + +   +  N Q N  K+Q +DEL++V  EMVRLIETATAPI 
Sbjct: 301  AIHSLQLILRGSRKET-DGSGRNISINRQLNDLKLQEMDELNAVTNEMVRLIETATAPIL 359

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VD+ G +NGWN K AELTGL   E +G+ LI+ +V E S   V+ ++  AL G E++  
Sbjct: 360  AVDAYGVVNGWNRKAAELTGLSVEEVLGEPLIN-LVEETSAENVKRMLHLALQGVEEQXX 418

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
                             +LVNAC+SRD K NV GVCFV QD+T +K++MDKF R+QGDY 
Sbjct: 419  XXXXXXXXXXXXXXXXVLLVNACSSRDLKENVVGVCFVAQDVTGQKIVMDKFTRIQGDYR 478

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI------------------- 793
            AI+Q+ +PLIPPIF +DE   CSEWN+AMEK++GW R E+I                   
Sbjct: 479  AIVQNPSPLIPPIFGTDECGWCSEWNSAMEKLSGWKREEIIDKMLLGEVFGTRTACCRLK 538

Query: 794  --------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           +TGQGTE FPFGFF+R G++VE  L+A+++ D EGK+ G FCF+ 
Sbjct: 539  GQNALTQLRIILNSSMTGQGTEKFPFGFFDRHGKYVETLLSANKKLDEEGKITGVFCFLH 598

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I  P+LQ AL  Q + +     ++K L Y+R E+KNPL GI F  K++E + + E+QRQ 
Sbjct: 599  IASPELQQALYVQHMLEQAAMKRLKALTYLRLEIKNPLYGIMFTQKMMERTDLREDQRQL 658

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            +ETS  C++QI+ I+D MDL  IE+G ++L + EF LG +LDAV+SQ M+   +K L + 
Sbjct: 659  VETSALCQKQILKILDDMDLESIEDGYLDLDTVEFTLGALLDAVISQGMIQSEEKGLEIG 718

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
            +D+P EI    L GD+ RLQ +L++FL  V++  P+ + WV IKV P  + +      + 
Sbjct: 719  YDLPREITTTGLYGDQSRLQQILANFLVTVIQFTPA-EKWVRIKVSPTKRHLGGGVYVIR 777

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
            ++FR+THPG G+P  L++ M+N      + EG GL + RKL+ +MNG V+Y+R      F
Sbjct: 778  IEFRITHPGPGLPEKLVQQMFNFDPD-MSQEGFGLLICRKLVRLMNGDVQYLRGGGTSSF 836

Query: 1080 VIDLELKT 1087
            VI +EL T
Sbjct: 837  VIVVELAT 844


>gi|363547790|gb|AEW26936.1| phytochrome P [Macrozamia johnsonii]
          Length = 590

 Score =  897 bits (2317), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/598 (73%), Positives = 502/598 (83%), Gaps = 13/598 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTL TP S 
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLLTPSSA 59

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            SL KAAA++EISL+NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AG
Sbjct: 60  LSLEKAAAAQEISLMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 116 AVQSQKLAVGAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHT PR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTCPRAVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG  W++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA 
Sbjct: 354 YYGGMVWVLGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAA 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE 
Sbjct: 414 ARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWEN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            E++AIHSLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EM RLIETAT
Sbjct: 474 VEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMARLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 533 APILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLCHALRG 590


>gi|363547796|gb|AEW26938.1| phytochrome P [Macrozamia miquelii]
          Length = 590

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/598 (73%), Positives = 501/598 (83%), Gaps = 13/598 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S 
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSA 59

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            SL KAAA++EISL+NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AG
Sbjct: 60  LSLEKAAAAQEISLMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 116 AVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHT PR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTCPRAVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG  W++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA 
Sbjct: 354 YYGGMVWVLGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAA 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARIT+KDFLFW RSHTAKE+KWGGAKHHP  KD+G +MHPRSSFKAFLEVVK RS PWE 
Sbjct: 414 ARITAKDFLFWLRSHTAKEIKWGGAKHHPNDKDDGRRMHPRSSFKAFLEVVKRRSLPWEN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            E++AIHSLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EM RLIETAT
Sbjct: 474 VEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMARLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 533 APILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLCHALRG 590


>gi|363547812|gb|AEW26946.1| phytochrome P [Macrozamia reducta]
          Length = 590

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/598 (72%), Positives = 503/598 (84%), Gaps = 13/598 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S 
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSA 59

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            SL KAAA++EISL+NPI +HS  RS  KP YAI+HRIDVG+VID EP   GD A+S+AG
Sbjct: 60  LSLEKAAAAQEISLMNPIWMHS--RSSGKPSYAIVHRIDVGMVIDFEPV--GDAAMSVAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 116 AVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTSPRAVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL E++IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTERHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG  W++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA 
Sbjct: 354 YYGGMVWVLGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAA 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSF+AFLEVVK RS PWE 
Sbjct: 414 ARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFRAFLEVVKRRSLPWEN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            E++AIHSLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EM RLIETAT
Sbjct: 474 VEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMARLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 533 APILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLCHALRG 590


>gi|371940266|dbj|BAL45570.1| truncate phytochrome A2 protein [Glycine max]
          Length = 894

 Score =  896 bits (2315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/867 (50%), Positives = 590/867 (68%), Gaps = 58/867 (6%)

Query: 43  NADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ----ITAYLSKIQRGGLIQPFGC 98
             DA L A FE+S +S    +  R +    +GV + +     TAYL  +Q+G +IQPFGC
Sbjct: 27  TVDAKLHATFEESGSSFDYSSSVR-ISGTADGVNQPRHDKVTTAYLHHMQKGKMIQPFGC 85

Query: 99  MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           +LA++E T ++I YSEN  EML + S +     D    G IG D +TLFT PS ++L KA
Sbjct: 86  LLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALG-IGTDIKTLFTAPSASALQKA 144

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
               E+ LLNP+L+H  +    KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS K
Sbjct: 145 LGFAEVLLLNPVLIHCKTSG--KPFYAIIHRVTGSMIIDFEPVKPYEVPMTAAGALQSYK 202

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FH+DDHGEV++EI +  LE
Sbjct: 203 LAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLE 262

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF +N+VRMI DCHA  V V+Q ++L   L L  STLR+PH 
Sbjct: 263 PYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVRVLQDEKLPFDLTLCGSTLRAPHS 322

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDS------------MKLWGLVVCHHTSPRYIPFPLR 382
           CH QYM NM SIASLVMAV++N  +              +LWGLVVCH+T+PR++PFPLR
Sbjct: 323 CHAQYMANMDSIASLVMAVVVNDNEEDGDTDAIQPQKRKRLWGLVVCHNTTPRFVPFPLR 382

Query: 383 YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
           YACEFL Q F++ +  E+++  Q+ EKNILRTQ LLCD+++RDAP  IV++SP+IMDLVK
Sbjct: 383 YACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDLVMRDAPLGIVSESPNIMDLVK 442

Query: 443 CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
           CDGAAL Y  + W +GVTP+ESQ+++IA+WL   H D TG STDSL++AG+P A  LG  
Sbjct: 443 CDGAALIYKNKVWRLGVTPSESQIREIAFWLSEYHMDSTGFSTDSLSDAGFPSALSLGDV 502

Query: 503 VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
           VCGMA  R+T+KD +FWFRSHTA E++WGGAKH    KD+G +MHPRSSFK FL+VVK R
Sbjct: 503 VCGMAAVRVTAKDVVFWFRSHTAAEIRWGGAKHEAGEKDDGRRMHPRSSFKVFLDVVKAR 562

Query: 563 SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVR 622
           S PW+  EI+A+HSLQ+++R++F++ E  + +    NT+ +  K++G+ EL +V  E+VR
Sbjct: 563 SLPWKEYEIDAMHSLQLILRNAFKDTESMDLNTKAINTRLSDLKIEGMQELEAVTSEIVR 622

Query: 623 LIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICR 682
           LIETAT PI  VD  G +NGWN K+AELTGLP  EAMGK L+  +V + S   V+ ++  
Sbjct: 623 LIETATVPILAVDVDGLVNGWNIKIAELTGLPVGEAMGKHLL-TLVEDSSTDRVKKMLNL 681

Query: 683 ALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742
           ALLGEE+KNV+ +++    +     + ++VNAC SRD ++NV GVCFV  DIT +K +MD
Sbjct: 682 ALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMD 741

Query: 743 KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI--------- 793
           KF R++GDY+AI+Q+ NPLIPPIF +DE   C EWN AM K+TGW R EV+         
Sbjct: 742 KFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGELF 801

Query: 794 ------------------------GITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEG 829
                                    +TG  TE  PFGFF R G++VE  L+ S++ D EG
Sbjct: 802 GTHMAACRLKNQEAFVNLGVVLNKAMTGLETEKVPFGFFARNGKYVECLLSVSKKLDVEG 861

Query: 830 KVIGCFCFMQILVPDLQPALEAQGLED 856
            V G FCF+Q+  P+LQ AL  Q L +
Sbjct: 862 LVTGVFCFLQLASPELQQALHIQRLSE 888


>gi|363547822|gb|AEW26951.1| phytochrome P [Microcycas calocoma]
          Length = 590

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/596 (73%), Positives = 502/596 (84%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP SG S
Sbjct: 2   IQPFGCMLAVEEGTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPSSGLS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISLLNPI +HS S    KPFY I+HRIDVG+VID+EP   GD A+S+AGAV
Sbjct: 62  LEKAAAAQEISLLNPIWMHSKSSG--KPFYVIVHRIDVGMVIDIEPV--GDAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQA+PGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQAVPGGDIGLLCDTVVEDVRELTGYDRVMVYKFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVSVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLVMAV+IN+  +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSIASLVMAVVINA--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLASQLTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTESQ+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWVLGVTPTESQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSH AKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHAAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SF+++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFRDI-DDSETKTMIHSRLNDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V+EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEATGKSLVCDLVYEESMETVERLLRLALRG 590


>gi|406685461|gb|AFS51171.1| phytochrome P, partial [Araucaria biramulata]
          Length = 629

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/606 (71%), Positives = 498/606 (82%), Gaps = 24/606 (3%)

Query: 135 IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
           IG D RTLFT  S  +L KAA + EISL+NPI VHS  ++  KPFYAI+HRIDVG+V+DL
Sbjct: 27  IGTDVRTLFTTSSARALEKAAMAHEISLMNPIWVHS--KNTNKPFYAIVHRIDVGMVMDL 84

Query: 195 EPSKSG-----DPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYD 249
           EP ++G     D ALS AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYD
Sbjct: 85  EPVRTGSGGGGDAALSAAGAVQSQKLAVRAISRLQSLPAGDIGLLCDTVVEDVRELTGYD 144

Query: 250 RVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIP 309
           RVM+Y FH+D+HGEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A P
Sbjct: 145 RVMVYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRAAP 204

Query: 310 VMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS--------- 360
           V VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +          
Sbjct: 205 VKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEGGGGGGSG 264

Query: 361 -------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILR 413
                  MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+ILR
Sbjct: 265 SGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILR 324

Query: 414 TQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWL 473
           TQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WL
Sbjct: 325 TQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWL 384

Query: 474 LNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGA 533
           L  H D TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGA
Sbjct: 385 LEYHVDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGA 444

Query: 534 KHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEND 593
           KHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ N 
Sbjct: 445 KHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSN- 503

Query: 594 SKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGL 653
           +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVAELTGL
Sbjct: 504 TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVAELTGL 563

Query: 654 PASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
           P  EAMGKSL+ +++ EES   V+ ++  AL GEE+KNVE+KLR F  QKQ   +Y++VN
Sbjct: 564 PVGEAMGKSLVHDLIFEESANTVDKMLYHALRGEEEKNVEIKLRTFGPQKQKKAIYLVVN 623

Query: 714 ACTSRD 719
           AC+SRD
Sbjct: 624 ACSSRD 629


>gi|363547810|gb|AEW26945.1| phytochrome P [Macrozamia polymorpha]
          Length = 590

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/598 (72%), Positives = 502/598 (83%), Gaps = 13/598 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S 
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSA 59

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            SL KAAA++EIS +NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AG
Sbjct: 60  LSLEKAAAAQEISFMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 116 AVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DI QA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDISQASRFLFMQNRVRMICDCRATPVRVIQATELRQPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTSPRAVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG  W++GV+P E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA 
Sbjct: 354 YYGGMVWVLGVSPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAA 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE 
Sbjct: 414 ARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWEN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            E++AIHSLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EM RLIETAT
Sbjct: 474 VEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMARLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 533 APILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLCHALRG 590


>gi|406685517|gb|AFS51199.1| phytochrome P, partial [Halocarpus bidwillii]
          Length = 584

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/587 (73%), Positives = 491/587 (83%), Gaps = 18/587 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNG----LIG 136
           AYLS++QRGG IQPFGCMLAVEE TF+II YS+N LEMLD+ S+S  + +L       IG
Sbjct: 1   AYLSRMQRGGTIQPFGCMLAVEETTFKIIAYSQNALEMLDIMSQSVPNMDLGKPGTLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEP 196
            D RTLFTP S  +L KA+ ++EISL+NPI VHS      KPFYAI+HRIDVG+VIDLEP
Sbjct: 61  TDVRTLFTPASARALEKASMAQEISLMNPIWVHSQYSG--KPFYAIVHRIDVGMVIDLEP 118

Query: 197 SKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNF 256
            ++GD A+S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+Y F
Sbjct: 119 VRTGDAAMSAAGAVQSQKLAVRAISRLQSLPAGDIGLLCDTVVEDVRQLTGYDRVMVYKF 178

Query: 257 HDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSK 316
           H+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS+
Sbjct: 179 HEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVQVIQSE 238

Query: 317 ELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS----------MKLWGL 366
           EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D           MKLWGL
Sbjct: 239 ELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGKSGGSSMKLWGL 298

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLRDA
Sbjct: 299 VVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDA 358

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGLSTD
Sbjct: 359 PIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIADWLLEYHGDSTGLSTD 418

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGA  LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 419 SLADAGYPGATSLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 478

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ N +K   + + N  K
Sbjct: 479 HPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSN-TKTMVHARLNDLK 537

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGL 653
           +QG+DELS VA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGL
Sbjct: 538 LQGIDELSCVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGL 584


>gi|218683843|gb|ACL00876.1| phytochrome B [Cleome hassleriana]
          Length = 632

 Score =  894 bits (2311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/606 (69%), Positives = 497/606 (82%), Gaps = 14/606 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E +R+DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV VIQ + L QP
Sbjct: 61  GEVVAESKRADLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVCVIQDERLTQP 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCH 370
           LCLV STLR+PHGCH QYM NMGS+ASL MAVIIN            ++SM+LWGLVVCH
Sbjct: 121 LCLVGSTLRAPHGCHAQYMANMGSLASLAMAVIINGNEEEAGSVAGGRNSMRLWGLVVCH 180

Query: 371 HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
           HTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LRTQ LLCDMLLRD+P  I
Sbjct: 181 HTSARCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRVLRTQTLLCDMLLRDSPTGI 240

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           VTQ PSIMDLVKCDGAA  Y GR + +GV P+E+Q+KDI  WLL NHGD TGLSTDSLA+
Sbjct: 241 VTQKPSIMDLVKCDGAAFLYQGRYYPLGVAPSEAQIKDIVEWLLANHGDSTGLSTDSLAD 300

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYPGAA LG AVCGMA A IT KDFLFWFRSHTAKE+KWGGAKHHPE KD+  +MHPRS
Sbjct: 301 AGYPGAATLGDAVCGMAVAYITRKDFLFWFRSHTAKEIKWGGAKHHPEDKDDSQRMHPRS 360

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM--Q 608
           SFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E  N ++V     Q G  M  Q
Sbjct: 361 SFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKESETVN-TRVAVRADQPGGDMAVQ 419

Query: 609 GVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVV 668
           G+DELS+VA EMVRLIETAT PI  VD  G INGWN K+AELTGL   EAMGKSL+ +++
Sbjct: 420 GLDELSAVAREMVRLIETATVPILAVDVEGRINGWNGKIAELTGLSVEEAMGKSLVRDLI 479

Query: 669 HEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVC 728
           ++E +  VE L+  AL GEEDKNVE+K++ F  + +   V+++VNAC+S+DY NN+ GVC
Sbjct: 480 YKEYEETVEKLLSHALRGEEDKNVEIKMKTFSRELEGQAVFVVVNACSSKDYLNNIVGVC 539

Query: 729 FVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWM 788
           FVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+DEN CC EWN AMEK+TGW 
Sbjct: 540 FVGQDVTGQKIVMDKFIHIQGDYKAIVHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWS 599

Query: 789 RHEVIG 794
           R EVIG
Sbjct: 600 RAEVIG 605


>gi|363547657|gb|AEW26871.1| phytochrome P [Dioon edule]
          Length = 590

 Score =  894 bits (2311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/599 (72%), Positives = 501/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEEGTFRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPAS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +H  S    K FYAI+HRIDVG+VID EP+  GD A+S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHGKSSG--KAFYAIVHRIDVGMVIDFEPA--GDAAMSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV V+Q+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVVQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM NMGSIA+LVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEF
Sbjct: 235 TLRAPHGCHAQYMANMGSIATLVMAVVVNG--NMKLWGLVVCHHTSPRAVPFPVRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  H D TGLSTDSLAEAGYPGAA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPPEAQIKDIAAWLLECHADWTGLSTDSLAEAGYPGAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            A+IT+KDFLFWFRSHTAKE+KWGGAKHHP+ +D+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AAKITAKDFLFWFRSHTAKEIKWGGAKHHPDDRDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ ++ ++K   + + N  ++QG+DELSS+A EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDTETKTMIHARLNDLRVQGMDELSSIASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+C AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLCHALRG 590


>gi|363547802|gb|AEW26941.1| phytochrome P [Macrozamia mountperriensis]
          Length = 590

 Score =  894 bits (2311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/598 (73%), Positives = 502/598 (83%), Gaps = 13/598 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S 
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENPVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSA 59

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            SL KAAA++EISL+NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AG
Sbjct: 60  LSLEKAAAAQEISLMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LPGGDIGLLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 116 AVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEGVRELTGYDRVMVYRFHEDEHGEVVAEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVGVIQAAELRQPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHT PR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTCPRAVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG  W++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA 
Sbjct: 354 YYGGMVWVLGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAA 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE 
Sbjct: 414 ARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWEN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            E++AIHSLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EM RLIETAT
Sbjct: 474 VEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMARLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 533 APILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLCHALRG 590


>gi|363547782|gb|AEW26932.1| phytochrome P [Macrozamia elegans]
          Length = 590

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/598 (73%), Positives = 502/598 (83%), Gaps = 13/598 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S 
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSA 59

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
            SL KAAA++EISL+NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AG
Sbjct: 60  LSLEKAAAAQEISLMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 116 AVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NM SIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMCSIASLVMAVVING--NMKLWGLVVCHHTSPRAVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG  W++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA  G AVCGMA 
Sbjct: 354 YYGGMVWVLGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASPGDAVCGMAA 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARIT+KDFLFWF SHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE 
Sbjct: 414 ARITAKDFLFWFGSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWEN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            E++AIHSLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EMVRLIETAT
Sbjct: 474 VEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMVRLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 533 APILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLCHALRG 590


>gi|363547544|gb|AEW26815.1| phytochrome P [Cycas ferruginea]
          Length = 589

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDCHA PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCHATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++ +K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSKTKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547519|gb|AEW26803.1| phytochrome P [Cycas chamaoensis]
          Length = 589

 Score =  893 bits (2308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AVIIN   ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAPHGCHSQYMANMGSIASLVLAVIING--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547562|gb|AEW26824.1| phytochrome P [Cycas media subsp. media]
          Length = 589

 Score =  893 bits (2307), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQSAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAPF IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547615|gb|AEW26850.1| phytochrome P [Cycas tansachana]
          Length = 589

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAPHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++ +EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLAYEESVETVERLLYHALKG 589


>gi|363547665|gb|AEW26875.1| phytochrome P [Dioon tomasellii]
          Length = 590

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/599 (72%), Positives = 501/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEEGTFRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPAS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +H  S    K FYAI+HRIDVG+VID EP+  GD A+S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHGKSSG--KAFYAIVHRIDVGMVIDFEPA--GDAAMSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV V+Q+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVVQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM NMGSIASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEF
Sbjct: 235 TLRAPHGCHAQYMANMGSIASLVMAVVVNG--NMKLWGLVVCHHTSPRAVPFPVRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL M+LQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMDLQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  H D TGLSTDSLAEAGYPGAA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPPEAQIKDIADWLLECHADWTGLSTDSLAEAGYPGAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            A+IT+KDFLFWFRSHTAKE+KWGGAKHHP+ +D+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AAKITAKDFLFWFRSHTAKEIKWGGAKHHPDDRDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ ++ ++K   + + N  ++QG+DELSS+A EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDTETKTMIHARLNDLRVQGMDELSSIASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+C AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLCHALRG 590


>gi|363547550|gb|AEW26818.1| phytochrome P [Cycas hainanensis]
          Length = 589

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/597 (73%), Positives = 503/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCM+AVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMIAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPIL+   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPILM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|218683841|gb|ACL00875.1| phytochrome B [Polanisia dodecandra]
          Length = 632

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/606 (69%), Positives = 497/606 (82%), Gaps = 14/606 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV A S+LQ+LPGGDI LLCDTVV+ V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAXSQLQSLPGGDIKLLCDTVVQSVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV VIQ +  KQP
Sbjct: 61  GEVVAESKRGDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVRVIQDERFKQP 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCH 370
           LCLV STLR+PHGCH QYM NMG++ASL MAVIIN            ++SM+LWGLVVCH
Sbjct: 121 LCLVGSTLRAPHGCHAQYMANMGTMASLAMAVIINGNEEDTNSVAGGRNSMRLWGLVVCH 180

Query: 371 HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
           HTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LRTQ LLCDMLLRD+P  I
Sbjct: 181 HTSARCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRVLRTQTLLCDMLLRDSPAGI 240

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           VTQSPSIMDLVKCDGAA  Y G+ + +GV P+E+Q+KDI  WLL NH D TGLSTDSLA+
Sbjct: 241 VTQSPSIMDLVKCDGAAFLYQGKYYPLGVAPSEAQIKDIVQWLLANHADSTGLSTDSLAD 300

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRS
Sbjct: 301 AGYPGAAALGDAVCGMAVAYITRRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRS 360

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM--Q 608
           SFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E  N +K      Q G  M  Q
Sbjct: 361 SFKAFLEVVKSRSMPWENAEMDAIHSLQLILRDSFKESEAIN-AKAAVRADQPGGAMTVQ 419

Query: 609 GVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVV 668
           G+DELS+VA EMVRLIETAT PIF VD  G INGWNAK+AELTGL   EAMGKSL+ E++
Sbjct: 420 GLDELSAVAREMVRLIETATVPIFAVDVDGRINGWNAKIAELTGLSVEEAMGKSLVHELI 479

Query: 669 HEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVC 728
           +EE +  VE L+ RAL G+EDKNVE+KL+ F  + +   V+++V+AC+S+DY NN+ GVC
Sbjct: 480 YEEYEETVEKLLSRALRGDEDKNVEVKLKTFNRELEGKAVFVVVSACSSKDYLNNIVGVC 539

Query: 729 FVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWM 788
           FVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+DEN CC EWN AMEK+TGW 
Sbjct: 540 FVGQDVTGQKIVMDKFIHIQGDYKAIVHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWS 599

Query: 789 RHEVIG 794
             EVIG
Sbjct: 600 GAEVIG 605


>gi|363547621|gb|AEW26853.1| phytochrome P [Cycas xipholepis]
          Length = 589

 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFPLRYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPLRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAPF IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547886|gb|AEW26983.1| phytochrome P [Zamia skinneri]
          Length = 590

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/596 (72%), Positives = 498/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EKNIL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKNILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++ +K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSKTKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547554|gb|AEW26820.1| phytochrome P [Cycas lindstromii]
          Length = 589

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/597 (73%), Positives = 503/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GKDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIIHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYRFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAPHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547603|gb|AEW26844.1| phytochrome P [Cycas siamensis]
          Length = 589

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAPHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDG ALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGTALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547585|gb|AEW26835.1| phytochrome P [Cycas platyphylla]
          Length = 589

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHYQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAPF IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GWRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|218683911|gb|ACL00910.1| phytochrome D [Capsella bursa-pastoris]
          Length = 658

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/631 (66%), Positives = 505/631 (80%), Gaps = 17/631 (2%)

Query: 181 AILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVE 240
           AILHR+DVGI+IDLEP+++ DPALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVV+
Sbjct: 1   AILHRVDVGILIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVD 60

Query: 241 DVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVR 300
            V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA  IPQA+RFLFKQNRVR
Sbjct: 61  SVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATGIPQASRFLFKQNRVR 120

Query: 301 MICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS--- 357
           MI DCHA PV V+Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN    
Sbjct: 121 MIVDCHASPVRVVQDDRLTQSICLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNEE 180

Query: 358 -----------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQL 406
                      ++SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q+
Sbjct: 181 DGNGVNSNTGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLALQV 240

Query: 407 AEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQL 466
           +EK +LR Q LLCDMLLRD+P  IVTQ PSIMDLVKC+GAA  Y G+ + +GV PTE+Q+
Sbjct: 241 SEKRVLRMQTLLCDMLLRDSPAGIVTQKPSIMDLVKCNGAAFLYQGKYYSLGVAPTEAQI 300

Query: 467 KDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAK 526
            DI  W+L NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHT K
Sbjct: 301 NDIVKWVLGNHSDSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTEK 360

Query: 527 EVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQ 586
           E+KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+R  PWE +E++AIHSLQ+++RDSF+
Sbjct: 361 EIKWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRCQPWETAEMDAIHSLQLILRDSFK 420

Query: 587 EMEEEND-SKVQGNTQQNGSKM--QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGW 643
           E E  N  +   G  Q +G  M  QG+ E+ +VA EMVRLIETAT PIF VD  G INGW
Sbjct: 421 ESEAMNSKAAAAGALQPHGEAMAEQGMQEIGAVAREMVRLIETATVPIFAVDIDGCINGW 480

Query: 644 NAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQK 703
           NAK+AELTGL A EAMGKSL+ +++++E +  V+ L+  AL G E KNVE+KL+ F L+ 
Sbjct: 481 NAKIAELTGLSAEEAMGKSLVRDLIYKEYEETVDRLLSCALKGGESKNVEVKLQTFGLEL 540

Query: 704 QHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIP 763
           Q   V+++VN C+S+DY NN+ GVCFVGQD+T  K++MDKF+ +QGDY+AII S NPLIP
Sbjct: 541 QGKAVFVVVNPCSSKDYLNNIVGVCFVGQDVTGHKIVMDKFVNIQGDYKAIIHSPNPLIP 600

Query: 764 PIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
           PIFA+DEN CC EWN AMEK+TGW R EVIG
Sbjct: 601 PIFAADENICCLEWNTAMEKLTGWPRSEVIG 631


>gi|363547581|gb|AEW26833.1| phytochrome P [Cycas pectinata]
          Length = 589

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EI L+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEIGLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAPHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547773|gb|AEW26928.1| phytochrome P [Lepidozamia peroffskyana]
          Length = 590

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/596 (73%), Positives = 502/596 (84%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGAS 150
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L IG D RTLFTP S  S
Sbjct: 2   IQPFGCMLAVEECTFRIIAYSENAVGMLDLAPQSVPTMEQEFLTIGTDIRTLFTPSSALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NPI +HS  RS  KPFYA++HRIDVG+VID EP   GD A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPIWMHS--RSSGKPFYAVVHRIDVGMVIDFEPV--GDAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQSLPVGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+P+ DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPSTDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFPLRYACEFL+Q
Sbjct: 238 APHGCHAQYMVNMGSIASLVMAVVING--NMKLWGLVVCHHTSPRAVPFPLRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKRILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTP E+Q++DIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWVLGVTPAEAQIEDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547527|gb|AEW26807.1| phytochrome P [Cycas clivicola]
          Length = 589

 Score =  891 bits (2302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHCPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAPHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547623|gb|AEW26854.1| phytochrome P [Cycas yorkiana]
          Length = 589

 Score =  891 bits (2302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAVHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAPF IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547552|gb|AEW26819.1| phytochrome P [Cycas hongheensis]
 gi|363547611|gb|AEW26848.1| phytochrome P [Cycas taitungensis]
          Length = 589

 Score =  891 bits (2302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547663|gb|AEW26874.1| phytochrome P [Dioon spinulosum]
          Length = 590

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/596 (72%), Positives = 500/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGAS 150
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S    E   L IG D RTLFTP S  S
Sbjct: 2   IQPFGCMLAVEEGTFRIIAYSENAVGMLDLAPQSVPTMEQEFLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NPI +H  S    K FYAI+HRIDVG+VID EP+  GD A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPIWMHGKSSG--KAFYAIVHRIDVGMVIDFEPA--GDAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV V+Q+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVVQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NM SIASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMRSIASLVMAVVVNG--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W +GVTP E+Q+KDIA WLL  H D TGLSTDSLAEAGYPGAA LG AVCGMA A+
Sbjct: 356 GGMVWALGVTPPEAQIKDIADWLLECHADWTGLSTDSLAEAGYPGAASLGDAVCGMAAAK 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ +D+G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDRDDGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSS+A EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGMDELSSIASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+C AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLCHALRG 590


>gi|406685609|gb|AFS51245.1| phytochrome P, partial [Podocarpus totara]
          Length = 600

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/589 (72%), Positives = 489/589 (83%), Gaps = 13/589 (2%)

Query: 135 IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
           IG D RTLFTP S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+VIDL
Sbjct: 15  IGTDVRTLFTPSSARALEKAATAPDISLMNPIWVHSQCSG--KPFNAIVHRIDVGMVIDL 72

Query: 195 EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
           EP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+Y
Sbjct: 73  EPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMVY 132

Query: 255 NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
            FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ
Sbjct: 133 KFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVIQ 192

Query: 315 SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKLW 364
           S+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKLW
Sbjct: 193 SEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGPSGRSSMKLW 252

Query: 365 GLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLR 424
           GLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLR
Sbjct: 253 GLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLR 312

Query: 425 DAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLS 484
           DAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGLS
Sbjct: 313 DAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGLS 372

Query: 485 TDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGG 544
           TDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G 
Sbjct: 373 TDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGR 432

Query: 545 KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNG 604
           +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +   
Sbjct: 433 RMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLTD 491

Query: 605 SKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLI 664
            K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL+
Sbjct: 492 LKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSLV 551

Query: 665 DEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
            +VV EES   +E ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VN
Sbjct: 552 HDVVLEESAECLEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVN 600


>gi|218683859|gb|ACL00884.1| phytochrome B [Camelina microcarpa]
          Length = 634

 Score =  890 bits (2301), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/607 (68%), Positives = 498/607 (82%), Gaps = 14/607 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV+V+Q   L Q 
Sbjct: 61  GEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVLVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-----------SMKLWGLVVCH 370
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN  D           SM+LWGLVVCH
Sbjct: 121 MCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNDEDGSNVASGRSSMRLWGLVVCH 180

Query: 371 HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
           HTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E+ +LRTQ LLCDMLLRD+P  I
Sbjct: 181 HTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEERVLRTQTLLCDMLLRDSPAGI 240

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           VTQSPSIMDLVKCDGAA  Y G+ + +GV P+E+Q++D+  WLL NH D TGLSTDSL +
Sbjct: 241 VTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEAQIRDVVEWLLANHADSTGLSTDSLGD 300

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRS
Sbjct: 301 AGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRS 360

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK-VQGNTQ--QNGSKM 607
           SFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E   +SK V G  Q  ++ S  
Sbjct: 361 SFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKTVDGAVQPYKDMSGE 420

Query: 608 QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
           QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+ ++
Sbjct: 421 QGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDL 480

Query: 668 VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGV 727
           +++E++  V  L+ RAL G+E+KNVE+KL+ F  + Q   V+++VNAC+S+DY NN+ GV
Sbjct: 481 IYKENEETVSKLLSRALRGDEEKNVEVKLKTFSSELQGKAVFVVVNACSSKDYLNNIVGV 540

Query: 728 CFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGW 787
           CFV QD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+DEN CC EWN AMEK+TGW
Sbjct: 541 CFVAQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFAADENTCCLEWNTAMEKLTGW 600

Query: 788 MRHEVIG 794
            R EVIG
Sbjct: 601 SRSEVIG 607


>gi|363547599|gb|AEW26842.1| phytochrome P [Cycas semota]
          Length = 589

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 501/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHYQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAPF IVTQSPSIMDL KCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPFGIVTQSPSIMDLAKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547587|gb|AEW26836.1| phytochrome P [Cycas revoluta]
          Length = 589

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQ+ MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQVNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547717|gb|AEW26901.1| phytochrome P [Encephalartos lanatus]
          Length = 590

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/599 (72%), Positives = 501/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A+S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAAMSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGD+GLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDVGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|406685645|gb|AFS51263.1| phytochrome P, partial [Picea glauca]
          Length = 584

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/588 (73%), Positives = 495/588 (84%), Gaps = 19/588 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TFRII YSEN +EMLDL  +S    E  +L  L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEETTFRIIAYSENAVEMLDLAPQSVPSMEQPQLEVLTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASAHSLEKAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P K+GD  +S AGAVQSQKLAV AISRLQ+LP GDI LLCD+VVE+V++LTGYDRVM+Y 
Sbjct: 118 PLKTGDAFVSAAGAVQSQKLAVRAISRLQSLPCGDIELLCDSVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVQVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGSIASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINGNDDEGAGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEF++QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFMMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PIGIVTQSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAASLGDAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K   +++ N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLP 654
           +QG+DELSSVA EMVRLIETATAPI  VD +G +NGWNAKVAELTGLP
Sbjct: 537 LQGIDELSSVASEMVRLIETATAPILAVDYNGLVNGWNAKVAELTGLP 584


>gi|363547901|gb|AEW26990.1| phytochrome P [Pinus strobus]
          Length = 590

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/598 (73%), Positives = 502/598 (83%), Gaps = 11/598 (1%)

Query: 92  LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGA 149
           +IQPFGC+LAVEE TFRII YSEN +EMLDL  +S    E   L IG D RT FT  S  
Sbjct: 1   IIQPFGCVLAVEETTFRIIAYSENAVEMLDLAPQSVPSMEQEVLTIGTDVRTQFTAASSH 60

Query: 150 SLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
           SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VIDLEP   GD  +S AG
Sbjct: 61  SLEKAAVTQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDLEPL--GDAFMSAAG 115

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           AVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGYDRVM+Y FH+D+HGEVV EI
Sbjct: 116 AVQSQKLAVRAISRLQSLPCGDIGLLCDTVVENVRELTGYDRVMVYKFHEDEHGEVVFEI 175

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS+EL QPLCLV ST
Sbjct: 176 RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQSEELMQPLCLVGST 235

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388
           LR+PHGCH QYM NMGSIASLVMAVIIN   +MKLWGLVVCHHTSPR +PFPLRYACEFL
Sbjct: 236 LRAPHGCHAQYMANMGSIASLVMAVIING--NMKLWGLVVCHHTSPRPVPFPLRYACEFL 293

Query: 389 VQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAAL 448
           +QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLR AP  IVTQSPSIMDLVKCDGAAL
Sbjct: 294 MQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRHAPMGIVTQSPSIMDLVKCDGAAL 353

Query: 449 YYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMAT 508
           YYGG+CW++GVTPTE+Q+KDIA WLL +HGD TGLSTDSLA+AGYPGAA LG AVCGMA+
Sbjct: 354 YYGGKCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTDSLADAGYPGAASLGDAVCGMAS 413

Query: 509 ARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEV 568
           ARITSKDF+FWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PW+ 
Sbjct: 414 ARITSKDFIFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWDN 473

Query: 569 SEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETAT 628
            EI+AIHSLQ+++R SFQ++++   +K   ++Q N  ++QG+DELSSVA EMVRLIETAT
Sbjct: 474 VEIDAIHSLQLILRGSFQDIDDSG-TKTMVHSQLNDLRLQGIDELSSVASEMVRLIETAT 532

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           API  VD +G +NGWNAKVAELTGLP  EAMG SL+ ++V EES  +VE ++  AL G
Sbjct: 533 APILAVDYNGCVNGWNAKVAELTGLPVGEAMGMSLVQDLVFEESVESVEKMLYNALRG 590


>gi|363547556|gb|AEW26821.1| phytochrome P [Cycas litoralis]
          Length = 589

 Score =  890 bits (2300), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 501/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLSMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547533|gb|AEW26810.1| phytochrome P [Cycas couttsiana]
          Length = 589

 Score =  890 bits (2299), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASL++AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHYQYMANMGSIASLILAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAPF IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGW+AKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWDAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547515|gb|AEW26801.1| phytochrome P [Cycas cairnsiana]
          Length = 589

 Score =  890 bits (2299), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 501/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI   + SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIW--TRSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDKHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHYQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAPF IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KD+A WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDMADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547503|gb|AEW26795.1| phytochrome P [Cycas apoa]
          Length = 589

 Score =  890 bits (2299), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSE+ +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSEDAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAPF IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547655|gb|AEW26870.1| phytochrome P [Zamia restrepoi]
 gi|363547862|gb|AEW26971.1| phytochrome P [Zamia manicata]
 gi|363547864|gb|AEW26972.1| phytochrome P [Zamia muricata]
          Length = 590

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/596 (72%), Positives = 498/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++ +K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSKTKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547575|gb|AEW26830.1| phytochrome P [Cycas ophiolitica]
          Length = 589

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 501/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAVHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAPF IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+ GYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADTGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547505|gb|AEW26796.1| phytochrome P [Cycas armstrongii]
          Length = 589

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 501/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTL TP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLLTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAPF IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547893|gb|AEW26986.1| phytochrome P [Ginkgo biloba]
          Length = 590

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/596 (73%), Positives = 492/596 (82%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGAS 150
           IQPFGCML VE+ TFRII YSEN +EMLDL   S    E   L IG D RTLFTP S  S
Sbjct: 2   IQPFGCMLTVEDITFRIIAYSENAVEMLDLIPNSVPSMEEEVLAIGTDVRTLFTPSSALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NPI +H       KPFYAI+HRIDVG+VID EP   GD +LS AGAV
Sbjct: 62  LEKAAAAKEISLMNPIWMHCKHSG--KPFYAIVHRIDVGMVIDFEPV--GDASLSAAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQ++PGGDI LLCDTVVEDV+ LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQSIPGGDISLLCDTVVEDVRDLTGYDRVMVYKFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ +EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCCATPVKVIQDEELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
            PHGCH QYM NMGSIASLVMAVIIN   +MKLWGLVVCHHTSPR +PFPLRYACEFL+Q
Sbjct: 238 XPHGCHAQYMANMGSIASLVMAVIING--TMKLWGLVVCHHTSPRAVPFPLRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF L L MELQ+  QL EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLXLNMELQLGAQLXEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  WL+GVTPTE+Q+KDIA WLL  H D TGLSTDSLA+AGYPGA  LG AVCGMA AR
Sbjct: 356 GGMFWLLGVTPTEAQIKDIADWLLEYHADSTGLSTDSLADAGYPGAPSLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           ITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++D+K   + + N  K+QG+DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSDTKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAKVAELTGLP  EAMGKSL+ ++V EES   VE L+  AL G
Sbjct: 535 ILAVDSGGLVNGWNAKVAELTGLPVGEAMGKSLVHDLVFEESVETVEKLLYHALRG 590


>gi|363547601|gb|AEW26843.1| phytochrome P [Cycas sexseminifera]
 gi|363547613|gb|AEW26849.1| phytochrome P [Cycas tanqingii]
          Length = 589

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/597 (73%), Positives = 501/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSVRAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+  +V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHNLVYEESVETVERLLYHALRG 589


>gi|363547593|gb|AEW26839.1| phytochrome P [Cycas schumanniana]
          Length = 589

 Score =  889 bits (2298), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 501/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+ I YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKTIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAPF IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547517|gb|AEW26802.1| phytochrome P [Cycas calcicola]
          Length = 589

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAPF IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTLIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAK+AELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKMAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|77963994|gb|ABB13338.1| phytochrome B [Hordeum vulgare subsp. spontaneum]
          Length = 753

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/742 (57%), Positives = 555/742 (74%), Gaps = 34/742 (4%)

Query: 377  IPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPS 436
            IPFPLRYACEFL+QAF LQL MELQ+A QL+EK+ILRTQ LLCDMLLRD+P  IVTQSPS
Sbjct: 1    IPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPS 60

Query: 437  IMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGA 496
            IMDLVKCDGAAL+Y G+ + +GVTPTE+Q+KDI  WL   HGD TGLSTDSLA+AGYPGA
Sbjct: 61   IMDLVKCDGAALFYHGKYYPLGVTPTEAQIKDIIEWLTVCHGDSTGLSTDSLADAGYPGA 120

Query: 497  ALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFL 556
              LG AVCGMA A IT  D+LFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFL
Sbjct: 121  TALGDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFL 180

Query: 557  EVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM-EEENDSK--VQGNTQQNGSKMQGVDEL 613
            EVVK+RS PWE +E++AIHSLQ+++RDSF++  E  ++SK  V G  Q    +++G+DEL
Sbjct: 181  EVVKSRSLPWENAEMDAIHSLQLILRDSFRDAGEGTSNSKAIVNGQVQLGELELRGIDEL 240

Query: 614  SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
            SSVA EMVRLIETAT PIF VD+ G INGWNAKVAELTGL   EAMGKSLI +++ +ES+
Sbjct: 241  SSVAREMVRLIETATVPIFAVDTYGCINGWNAKVAELTGLTVEEAMGKSLIKDLIFKESE 300

Query: 674  GAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733
              VE L+ +AL GEE  NVE+KL+ F  ++    ++++VNAC+SRDY  N+ GVCFVGQD
Sbjct: 301  EIVEKLLSQALRGEEGTNVEIKLKTFGSEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQD 360

Query: 734  ITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI 793
            IT +KV+MDKF+ +QGDY+AI+ + NPLIPPIFASDEN CCSEWN AME +TGW R EV+
Sbjct: 361  ITGQKVVMDKFVNIQGDYKAIVHNPNPLIPPIFASDENICCSEWNTAMENLTGWSRGEVV 420

Query: 794  G------------------------------ITGQGTENFPFGFFNRQGQFVEVALTASR 823
            G                              I GQ +E  PF FF++ G++V+  LTA+ 
Sbjct: 421  GKLLVGEVFGNCCRLKGPDALTKFMIALHNAIGGQDSEKSPFSFFDKNGKYVQALLTANT 480

Query: 824  RTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFV 883
            R+  +G+ IG FCF+QI  P+LQ A E Q  ++   YA++KELAYI QE+KNPL+GIRF 
Sbjct: 481  RSKMDGETIGAFCFLQIASPELQQAFEIQRQQEKKCYARMKELAYICQEIKNPLSGIRFT 540

Query: 884  HKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAV 943
            + LLE + + ++QRQ+LETS ACE+Q+  I+    L+ IE+G++ L+  E  LGN+++AV
Sbjct: 541  NSLLEMTDLKDDQRQFLETSAACEKQMSKIVKDASLQSIEDGSLVLEKGEISLGNVMNAV 600

Query: 944  VSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIK 1003
            VSQVM+LLR+++L L+ DIP+EIK  S  GD+ R+Q VLSDFL  +VR AP+ +GWVEI+
Sbjct: 601  VSQVMILLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLSDFLLSMVRFAPTENGWVEIQ 660

Query: 1004 VLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIM 1063
            V P +K   D  + +   FR   PGEG+P  +++DM++   +WTT EG+GL + RK+L +
Sbjct: 661  VRPNVKQNSDGTETMLFLFRFACPGEGLPPDIVQDMFSN-ARWTTQEGIGLSVCRKILKL 719

Query: 1064 MNGRVRYVRENSKCYFVIDLEL 1085
            M G V+Y+RE+ + +F+I LEL
Sbjct: 720  MGGEVQYIRESERSFFLIVLEL 741


>gi|363547579|gb|AEW26832.1| phytochrome P [Cycas pectinata]
          Length = 589

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 501/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV  ISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRTISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAPHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAK VKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKGVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|218683871|gb|ACL00890.1| phytochrome B [Aethionema oppositifolium]
          Length = 634

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/607 (68%), Positives = 495/607 (81%), Gaps = 14/607 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E RR DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV+V+Q   L Q 
Sbjct: 61  GEVVAESRRDDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVLVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCH 370
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN            ++SM+LWGLVVCH
Sbjct: 121 MCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEDDGSNVAGGRNSMRLWGLVVCH 180

Query: 371 HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
           HTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LRTQ LLCDMLLRD+P  I
Sbjct: 181 HTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRVLRTQTLLCDMLLRDSPAGI 240

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           VTQSPSIMDLVKCDGAA  Y G+ + +GV PTE Q+KD+  WLL NH D TGLSTDSL +
Sbjct: 241 VTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPTEVQIKDVVEWLLANHADSTGLSTDSLGD 300

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRS
Sbjct: 301 AGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRS 360

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM--- 607
           SFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E   +S+      Q    +   
Sbjct: 361 SFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEAAMNSRTADGAVQPCRDVGGE 420

Query: 608 QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
           QG+DEL +VA EMVRLIETAT PIF VD+ G +NGWNAK+AELTGL   EAMGKSL+ ++
Sbjct: 421 QGIDELGAVAREMVRLIETATVPIFAVDAGGCVNGWNAKIAELTGLSVEEAMGKSLVSDL 480

Query: 668 VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGV 727
           +++E++  V+ LI RAL G+EDKNVE+KL+ F  + +   V+++VNAC+S+DY NN+ GV
Sbjct: 481 IYKENEETVDKLISRALRGDEDKNVEVKLKTFSPEPEGKAVFVVVNACSSKDYLNNIVGV 540

Query: 728 CFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGW 787
           CFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+DEN CC EWN AMEK+TGW
Sbjct: 541 CFVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFAADENTCCLEWNTAMEKLTGW 600

Query: 788 MRHEVIG 794
            R E IG
Sbjct: 601 SRGEAIG 607


>gi|363547507|gb|AEW26797.1| phytochrome P [Cycas basaltica]
          Length = 589

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 501/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAVHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAPF IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIE ATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMMHARLNDLRVQGIDELSSVASEMVRLIEAATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547868|gb|AEW26974.1| phytochrome P [Zamia obliqua]
          Length = 590

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/596 (72%), Positives = 499/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS++SLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVSSLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547541|gb|AEW26814.1| phytochrome P [Cycas edentata]
 gi|363547567|gb|AEW26826.1| phytochrome P [Cycas micronesica]
 gi|363547625|gb|AEW26855.1| phytochrome P [Cycas zeylanica]
          Length = 589

 Score =  889 bits (2297), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 501/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547609|gb|AEW26847.1| phytochrome P [Cycas szechuanensis]
          Length = 589

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 501/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  A  G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHASRG 589


>gi|218683891|gb|ACL00900.1| phytochrome B [Sisymbrium altissimum]
          Length = 633

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/606 (68%), Positives = 496/606 (81%), Gaps = 13/606 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E RR DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV+V+Q   L Q 
Sbjct: 61  GEVVAESRREDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVLVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCH 370
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN            + SM+LWGLVVCH
Sbjct: 121 MCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEDDGTNVAGGRSSMRLWGLVVCH 180

Query: 371 HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
           HTS R IPFPLRYACEFL+QAF LQL MELQ+A++++EK +LRTQ LLCDMLLRD+P  I
Sbjct: 181 HTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALRMSEKRVLRTQTLLCDMLLRDSPAGI 240

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           VTQSPSIMDLVKC+GAA  Y G+ + +GV PTE+Q+K+I  WLL NH D TGLSTDSL +
Sbjct: 241 VTQSPSIMDLVKCNGAAFLYHGKYYPLGVAPTEAQIKEIVEWLLANHADSTGLSTDSLGD 300

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYPGAA LG AVCGMA A IT KDFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRS
Sbjct: 301 AGYPGAAALGDAVCGMAVAYITKKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRS 360

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKV-QGNTQQNG-SKMQ 608
           SFKAFL VVK+RS PWE +E++AIHSLQ+++RDSF+E E   +SK   G  Q  G +  Q
Sbjct: 361 SFKAFLGVVKSRSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKTADGAVQPLGMAGEQ 420

Query: 609 GVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVV 668
           G+DEL +VA  MVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+ +++
Sbjct: 421 GIDELGAVARGMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLI 480

Query: 669 HEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVC 728
           ++E++  V+ LI RAL G+EDKNVE+KL+ F  + Q   V+++VNAC+S+DY NN+ GVC
Sbjct: 481 YKENEETVDKLIARALRGDEDKNVEIKLKTFTPELQGKAVFVVVNACSSKDYSNNIVGVC 540

Query: 729 FVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWM 788
           FVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+DEN CC EWN AMEK+TGW 
Sbjct: 541 FVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWS 600

Query: 789 RHEVIG 794
           R EVIG
Sbjct: 601 RSEVIG 606


>gi|363547573|gb|AEW26829.1| phytochrome P [Cycas nongnoochiae]
          Length = 589

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/597 (73%), Positives = 502/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAPHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NG NAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGRNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALKG 589


>gi|363547569|gb|AEW26827.1| phytochrome P [Cycas revoluta]
          Length = 589

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 501/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSVRAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPR+SFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRTSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+  +V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHNLVYEESVETVERLLYHALRG 589


>gi|218683903|gb|ACL00906.1| phytochrome D [Arabidopsis kamchatica]
          Length = 655

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/628 (66%), Positives = 506/628 (80%), Gaps = 15/628 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHR+DVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDT+VE 
Sbjct: 1   ILHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTLVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA PV V+Q + L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN     
Sbjct: 121 IVDCHASPVRVVQDERLTQSICLVGSTLRAPHGCHAQYMANMGSIASLGMAVIINGNEED 180

Query: 358 --------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEK 409
                   ++SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK
Sbjct: 181 GNGVNVGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLALQVSEK 240

Query: 410 NILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDI 469
            +LR Q LLCDMLLRD+P  IVTQ+PSIMDLVKC+GAA  Y G+ + +GV PTE+Q+  I
Sbjct: 241 RVLRMQTLLCDMLLRDSPAGIVTQNPSIMDLVKCNGAAFLYHGKYYSLGVAPTEAQINYI 300

Query: 470 AWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVK 529
             WLL NH D TGLSTDSL +AGYP AA LG AVCGMA A IT +DFLFWFRSH+ KE+K
Sbjct: 301 VEWLLANHSDSTGLSTDSLGDAGYPQAAALGNAVCGMAVAYITKRDFLFWFRSHSEKEIK 360

Query: 530 WGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME 589
           WGGAKHHP+ KD+G +MHPRSSFKAFLEVVK+R  PWE +E++AIHSLQ+++RDSF+E E
Sbjct: 361 WGGAKHHPDDKDDGQRMHPRSSFKAFLEVVKSRCQPWETAEMDAIHSLQLILRDSFKEAE 420

Query: 590 E-ENDSKVQGNTQQNGSKM--QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAK 646
             ++ +   G  Q +G  M  QG++E+ +VA EMVRLIETAT PI  VD  G INGWNAK
Sbjct: 421 AMDSKAAAAGEVQPHGQDMAEQGMEEIGAVAREMVRLIETATVPILAVDRDGCINGWNAK 480

Query: 647 VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706
           +AELTGL   EAMGKSL+ +++H+E +  V+ L+  AL G+EDKNVE+KL+ F  + Q  
Sbjct: 481 IAELTGLSVEEAMGKSLVRDLIHKEYEETVDRLLSSALKGDEDKNVEVKLKTFGSELQGK 540

Query: 707 VVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIF 766
            V+++VNAC+S+   NNV GVCFVGQD+T EK++MDKF+ +QGDY+AII S NPLIPPIF
Sbjct: 541 AVFLVVNACSSKVQLNNVVGVCFVGQDVTGEKIVMDKFVDIQGDYKAIIHSPNPLIPPIF 600

Query: 767 ASDENACCSEWNAAMEKVTGWMRHEVIG 794
           A+DEN CC EWN AMEK+TGW R EVIG
Sbjct: 601 AADENTCCLEWNTAMEKLTGWPRSEVIG 628


>gi|363547697|gb|AEW26891.1| phytochrome P [Encephalartos friderici-guilielmi]
          Length = 589

 Score =  889 bits (2296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/599 (72%), Positives = 500/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 1   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 57

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A+S+A
Sbjct: 58  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAAMSVA 113

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 114 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 173

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 174 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 233

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHH SPR +PFPLRYACEF
Sbjct: 234 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHASPRAVPFPLRYACEF 291

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 292 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 351

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA
Sbjct: 352 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMA 411

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 412 AARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 471

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 472 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 530

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 589


>gi|406685657|gb|AFS51269.1| phytochrome P, partial [Tsuga canadensis]
          Length = 584

 Score =  888 bits (2295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/588 (73%), Positives = 493/588 (83%), Gaps = 19/588 (3%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGL-IG 136
           AYLS+IQRGG IQPFGC+LAVEE TF II YSEN +EMLDL  +S    E  +   L IG
Sbjct: 1   AYLSRIQRGGRIQPFGCVLAVEETTFTIIAYSENAVEMLDLAPQSVPSMEQPQPEALTIG 60

Query: 137 IDARTLFTPPSGASLAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLE 195
            D RTLFT  S  SL KAA ++EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID E
Sbjct: 61  TDVRTLFTAASAHSLEKAAVAQEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFE 117

Query: 196 PSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYN 255
           P ++GD  +S AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGYDRVM+Y 
Sbjct: 118 PLRTGDAVMSAAGAVQSQKLAVRAISRLQSLPCGDIGLLCDTVVENVRELTGYDRVMVYK 177

Query: 256 FHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQS 315
           FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS
Sbjct: 178 FHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQS 237

Query: 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGL 366
           +EL QPLCLV STLR+PHGCH QYM NMGS+ASLVMAVIIN  D         SMKLWGL
Sbjct: 238 EELMQPLCLVGSTLRAPHGCHAQYMANMGSVASLVMAVIINGNDDEAGGSGRNSMKLWGL 297

Query: 367 VVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA 426
           VVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDA
Sbjct: 298 VVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDA 357

Query: 427 PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTD 486
           P  IVTQSPSIMDL+KCDGAALYYGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTD
Sbjct: 358 PIGIVTQSPSIMDLIKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTD 417

Query: 487 SLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKM 546
           SLA+AGYPGAA LG AVCGMA+ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +M
Sbjct: 418 SLADAGYPGAASLGDAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRM 477

Query: 547 HPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSK 606
           HPRSSFKAFLEVVK RS PW+  EI+AIHSLQ+++R SFQ++++   +K   + + N  +
Sbjct: 478 HPRSSFKAFLEVVKRRSLPWDNVEIDAIHSLQLILRGSFQDIDDSG-TKTMVHARLNDLR 536

Query: 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLP 654
           +QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWN KVAELTGLP
Sbjct: 537 LQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNGKVAELTGLP 584


>gi|363547889|gb|AEW26984.1| phytochrome P [Zamia standleyi]
          Length = 590

 Score =  888 bits (2295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/596 (72%), Positives = 498/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDKGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  V S G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVSSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547539|gb|AEW26813.1| phytochrome P [Cycas dolichophylla]
          Length = 589

 Score =  888 bits (2295), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 501/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++E+SL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEMSLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSVRAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+  +V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHNLVYEESVETVERLLYHALRG 589


>gi|218683889|gb|ACL00899.1| phytochrome B [Thlaspi perfoliatum]
          Length = 634

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/607 (68%), Positives = 494/607 (81%), Gaps = 14/607 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E RR DLEPY+G+H+PA DIPQA+RFL KQNRVRMI DCHA PV+V+Q   L Q 
Sbjct: 61  GEVVAESRRDDLEPYIGLHYPATDIPQASRFLSKQNRVRMIVDCHATPVLVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCH 370
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN            ++SM+LWGLVVCH
Sbjct: 121 MCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNKDDGSNVAGGRNSMRLWGLVVCH 180

Query: 371 HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
           HTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LRTQ LLCDMLLRD+P  I
Sbjct: 181 HTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRVLRTQTLLCDMLLRDSPAGI 240

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           VTQSPSIMDLVKCDGAA  Y G+ + +GV PTE Q+KD+  WLL NH D TGLSTDSL +
Sbjct: 241 VTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPTEVQIKDVVGWLLANHADSTGLSTDSLGD 300

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRS
Sbjct: 301 AGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRS 360

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM--- 607
           SFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E   +SK      Q    M   
Sbjct: 361 SFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKTADGAVQPCRDMAGE 420

Query: 608 QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
           QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMG+SL+ ++
Sbjct: 421 QGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGRSLVSDL 480

Query: 668 VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGV 727
           +++E++  V+ LI RAL G+EDKNVE+KL+ F  + Q   V+++VNAC+S+DY NN+ GV
Sbjct: 481 IYKENEETVDKLISRALGGDEDKNVEVKLKTFSPELQGKAVFVVVNACSSKDYLNNIVGV 540

Query: 728 CFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGW 787
           CFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+DEN  C EWN AMEK+TGW
Sbjct: 541 CFVGQDVTGQKIVMDKFISIQGDYKAIVHSPNPLIPPIFAADENTSCLEWNTAMEKLTGW 600

Query: 788 MRHEVIG 794
            R EVIG
Sbjct: 601 SRGEVIG 607


>gi|406685597|gb|AFS51239.1| phytochrome P, partial [Podocarpus rumphii]
          Length = 600

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/589 (72%), Positives = 489/589 (83%), Gaps = 13/589 (2%)

Query: 135 IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
           IG D RTLFTP S  +L KAA + +ISL+NPI VHS+     KPF AI+HRIDVG+VIDL
Sbjct: 15  IGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSHYSG--KPFNAIVHRIDVGMVIDL 72

Query: 195 EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
           EP ++G+ A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+Y
Sbjct: 73  EPRRTGEAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMVY 132

Query: 255 NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
            FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ
Sbjct: 133 KFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVIQ 192

Query: 315 SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKLW 364
           S+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKLW
Sbjct: 193 SEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKLW 252

Query: 365 GLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLR 424
           GLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLR
Sbjct: 253 GLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLR 312

Query: 425 DAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLS 484
           DAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGLS
Sbjct: 313 DAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGLS 372

Query: 485 TDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGG 544
           TDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G 
Sbjct: 373 TDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGR 432

Query: 545 KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNG 604
           +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +   
Sbjct: 433 RMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMAHARLTD 491

Query: 605 SKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLI 664
            K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL+
Sbjct: 492 LKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSLV 551

Query: 665 DEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
            +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VN
Sbjct: 552 HDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVN 600


>gi|363547858|gb|AEW26969.1| phytochrome P [Zamia lecointei]
          Length = 590

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/596 (72%), Positives = 497/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEEHTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMHSESSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMA ++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAAVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++ +K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSKTKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547619|gb|AEW26852.1| phytochrome P [Cycas tropophylla]
          Length = 589

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 499/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA +REISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAREISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSVRAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDM LRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMFLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSL +AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLVDAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+  +V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGLSLVHNLVYEESVETVERLLYHALRG 589


>gi|363547560|gb|AEW26823.1| phytochrome P [Cycas macrocarpa]
          Length = 589

 Score =  887 bits (2293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 501/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y F +D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFREDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547546|gb|AEW26816.1| phytochrome P [Cycas fugax]
          Length = 589

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/597 (73%), Positives = 501/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQ+LPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQSLPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRAAPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AV IN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVSINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMLWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547617|gb|AEW26851.1| phytochrome P [Cycas thouarsii]
          Length = 589

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/597 (73%), Positives = 499/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL   S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPLSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFY I+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYVIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547826|gb|AEW26953.1| phytochrome P [Zamia acuminata]
          Length = 590

 Score =  887 bits (2291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/596 (72%), Positives = 496/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAA ++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAVAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+  QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLVAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ ++ ++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDTETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547709|gb|AEW26897.1| phytochrome P [Encephalartos inopinus]
          Length = 590

 Score =  887 bits (2291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/599 (72%), Positives = 499/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDCHA PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCHATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLV+AV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVVAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  H D TGLSTDSLA+AGYPGAA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHSDWTGLSTDSLADAGYPGAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547523|gb|AEW26805.1| phytochrome P [Cycas chevalieri]
          Length = 589

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/597 (73%), Positives = 500/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQ+LAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQRLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSVRAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GV PTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVAPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+  +V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHNLVYEESVETVERLLYHALRG 589


>gi|363547707|gb|AEW26896.1| phytochrome P [Encephalartos humilis]
          Length = 590

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/599 (72%), Positives = 499/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A+S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAAMSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEV +E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVAAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLS DSLA+AGYPGAA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSMDSLADAGYPGAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547866|gb|AEW26973.1| phytochrome P [Zamia neurophyllidia]
          Length = 590

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/596 (72%), Positives = 496/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGA 
Sbjct: 62  LEKAAAAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAA 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPG A LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGTASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++ +K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSKTKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547595|gb|AEW26840.1| phytochrome P [Cycas seemannii]
          Length = 589

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/597 (73%), Positives = 500/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV +IQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKIIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG S + ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSFVHDLVYEESVETVERLLYHALRG 589


>gi|363547513|gb|AEW26800.1| phytochrome P [Cycas brachycantha]
          Length = 589

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/597 (73%), Positives = 500/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+V D EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVTDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQ+LAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQELAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSVRAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+  +V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHNLVYEESVETVERLLYHALRG 589


>gi|218683881|gb|ACL00895.1| phytochrome B [Lepidium alyssoides]
          Length = 634

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/607 (68%), Positives = 493/607 (81%), Gaps = 14/607 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLC+TVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCNTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNR+RMI DCHA PV+V+Q     Q 
Sbjct: 61  GEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRIRMIVDCHATPVLVVQDDRFTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCH 370
           +CLV STLR+PH CH QYM NMGSIASL MAVIIN            ++SM+LWGLVVCH
Sbjct: 121 MCLVGSTLRAPHRCHSQYMANMGSIASLAMAVIINGIEEDGGNVAGGRNSMRLWGLVVCH 180

Query: 371 HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
           HTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q+AEK +LRTQ LLCDMLLRD+P  I
Sbjct: 181 HTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMAEKRVLRTQTLLCDMLLRDSPAGI 240

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           VTQSPSIMDLVKCDGAA  Y G  + +GV PTE Q+KDI  WLL NH D TGLSTDSL +
Sbjct: 241 VTQSPSIMDLVKCDGAAFIYHGGYYPLGVAPTEVQIKDIVEWLLANHADSTGLSTDSLGD 300

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRS
Sbjct: 301 AGYPGAAALGDAVCGMAVAYITERDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRS 360

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM--- 607
           SFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF++ E   +SK      Q    M   
Sbjct: 361 SFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKDSEAAINSKTADGAVQPFRDMTGE 420

Query: 608 QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
           QGVDEL +VA EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+ ++
Sbjct: 421 QGVDELGAVAREMVRLIETATVPIFAVDAGGYINGWNAKIAELTGLSVEEAMGKSLVSDL 480

Query: 668 VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGV 727
           ++++++  V+ LI RAL GEEDKNVE+KL+ F  + Q   V+++VNAC+S+DY NN+ GV
Sbjct: 481 IYKQNEETVDKLISRALRGEEDKNVEVKLKTFSPELQGKAVFVVVNACSSKDYLNNIVGV 540

Query: 728 CFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGW 787
           CFVGQDIT +K++MDKFI +QGDY+AI+ S NPLIPPIFA+DEN CC EWN AMEK++GW
Sbjct: 541 CFVGQDITGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFAADENTCCLEWNTAMEKLSGW 600

Query: 788 MRHEVIG 794
            R EVIG
Sbjct: 601 SRSEVIG 607


>gi|406685599|gb|AFS51240.1| phytochrome P, partial [Podocarpus salignus]
          Length = 600

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/589 (72%), Positives = 487/589 (82%), Gaps = 13/589 (2%)

Query: 135 IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
           IG D RTLFTP S  +L KAA + +ISL+NPI VHS      KP  AI+HRIDVG+VIDL
Sbjct: 15  IGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSQYSG--KPINAIVHRIDVGMVIDL 72

Query: 195 EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
           EP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+Y
Sbjct: 73  EPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMVY 132

Query: 255 NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
            FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ
Sbjct: 133 KFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVNVIQ 192

Query: 315 SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKLW 364
           S+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKLW
Sbjct: 193 SEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKLW 252

Query: 365 GLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLR 424
           GLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLR
Sbjct: 253 GLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLR 312

Query: 425 DAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLS 484
           DAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGLS
Sbjct: 313 DAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGLS 372

Query: 485 TDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGG 544
           TDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G 
Sbjct: 373 TDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGR 432

Query: 545 KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNG 604
           +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +   
Sbjct: 433 RMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLTD 491

Query: 605 SKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLI 664
            K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL+
Sbjct: 492 LKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSLV 551

Query: 665 DEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
            +VV EE    VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VN
Sbjct: 552 HDVVLEECAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVN 600


>gi|363547836|gb|AEW26958.1| phytochrome P [Zamia elegantissima]
          Length = 590

 Score =  886 bits (2290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/596 (72%), Positives = 497/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPIRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  H D TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHSDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD   KMHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDESRKMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMG+SL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGRSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547583|gb|AEW26834.1| phytochrome P [Cycas petraea]
          Length = 589

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/597 (73%), Positives = 500/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D R LFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRALFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PW   
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWGNV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547571|gb|AEW26828.1| phytochrome P [Cycas multipinnata]
          Length = 589

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 500/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIG LCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGPLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSVRAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+  +V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHNLVYEESVETVERLLYHALRG 589


>gi|363547537|gb|AEW26812.1| phytochrome P [Cycas diannanensis]
          Length = 589

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/597 (73%), Positives = 500/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+V+D EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVVDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+ +PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLRYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSVRAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKQRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+  +V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHNLVYEESVETVERLLYHALRG 589


>gi|363547659|gb|AEW26872.1| phytochrome P [Dioon merolae]
          Length = 590

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/599 (71%), Positives = 499/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVE+ TFRII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEKGTFRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPAS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +H  S    K FYAI+HRIDVG+VID EP+  GD A+S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHGKSSG--KAFYAIVHRIDVGMVIDFEPA--GDAAMSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEP LG+H+PA DIPQA+RFLF QNRVRMICDC A PV V+Q+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPCLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVVQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM NMGSIASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEF
Sbjct: 235 TLRAPHGCHAQYMANMGSIASLVMAVVVNG--NMKLWGLVVCHHTSPRAVPFPVRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  H D TGLSTDSLAEAGYPGAA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPPEAQIKDIADWLLECHADWTGLSTDSLAEAGYPGAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            A+IT+KDFLFWFRSHTAKE+KWGGAKHHP+ +D+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AAKITAKDFLFWFRSHTAKEIKWGGAKHHPDDRDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ ++ ++K   + + N  ++QG+DELSS+A EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDTETKTMIHARLNDLRVQGMDELSSIASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V+EES   VE L+C AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEATGKSLVCDLVYEESMETVERLLCHALRG 590


>gi|363547521|gb|AEW26804.1| phytochrome P [Cycas chamberlainii]
 gi|363547589|gb|AEW26837.1| phytochrome P [Cycas riuminiana]
          Length = 589

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/597 (73%), Positives = 499/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLE YLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLERYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKRILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547558|gb|AEW26822.1| phytochrome P [Cycas maconochiei]
          Length = 589

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/597 (73%), Positives = 500/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQK AV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKPAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+R LF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRSLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFPLRYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPLRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAPF IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547607|gb|AEW26846.1| phytochrome P [Cycas sphaerica]
          Length = 589

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/597 (73%), Positives = 500/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAVHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK++LRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHMLRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSL +AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLGDAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547860|gb|AEW26970.1| phytochrome P [Zamia loddigesii]
          Length = 590

 Score =  885 bits (2288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/596 (71%), Positives = 497/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ + S S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMQSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQA+PGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQAMPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+P  DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPTTDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++D+K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSDTKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  V+S G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVNSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547529|gb|AEW26808.1| phytochrome P [Cycas collina]
          Length = 589

 Score =  885 bits (2288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/597 (73%), Positives = 499/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SR   KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRCSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSVRAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGA  LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGATSLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+  +V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHNLVYEESVETVERLLYHALRG 589


>gi|218683931|gb|ACL00919.1| phytochrome D [Pachycladon exile]
          Length = 650

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/627 (66%), Positives = 504/627 (80%), Gaps = 18/627 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVG+V+DLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRIDVGVVLDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVR+
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRI 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA PV V+Q   L Q +CLV STLR+PHGCH QYM NM SIASL MAV+IN     
Sbjct: 121 IVDCHASPVRVVQDDRLTQSICLVGSTLRAPHGCHAQYMANMASIASLAMAVMINGNEED 180

Query: 358 --------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEK 409
                   ++SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK
Sbjct: 181 GNCVNTGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLALQVSEK 240

Query: 410 NILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDI 469
            +LR Q LLCDMLLRD+P  IVTQ PSIMDLVKC+GAA  Y G+ + +GV PTE+Q+ DI
Sbjct: 241 RVLRMQTLLCDMLLRDSPAGIVTQRPSIMDLVKCNGAAFLYQGKYYPLGVAPTEAQINDI 300

Query: 470 AWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVK 529
             WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHT KE+K
Sbjct: 301 VKWLLANHSDSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTEKEIK 360

Query: 530 WGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME 589
           WGGAKHHPE KD+G +MHPRSSF+AFLEVVK+R  PWE +E++AIHSLQ+++RDSF+E E
Sbjct: 361 WGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRCQPWETAEMDAIHSLQLILRDSFKESE 420

Query: 590 EENDSKVQGNTQQNGSKM--QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
               +   G  Q +G  +  QG+ E+ +VA EMVRLIETAT PIF V+  G INGWNAK+
Sbjct: 421 ----AAAAGAVQTHGEDIAEQGMQEIGAVAREMVRLIETATVPIFAVNIDGCINGWNAKI 476

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
           AELTGL   EAMGKSL+ +++++E +  V+ L+  AL G+E KNVE+KL+ F  + Q   
Sbjct: 477 AELTGLSVEEAMGKSLVRDLIYKEYEETVDRLLSCALKGDEGKNVEVKLKTFGPELQGKA 536

Query: 708 VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFA 767
           V++++NAC+S+DY NN+ GVCFVGQD+T  K++MDKFI +QGDY+AII S NPLIPPIFA
Sbjct: 537 VFVVINACSSKDYLNNIVGVCFVGQDVTGHKIVMDKFINIQGDYKAIIHSPNPLIPPIFA 596

Query: 768 SDENACCSEWNAAMEKVTGWMRHEVIG 794
           +DEN CC EWN AMEK+TGW R EVIG
Sbjct: 597 ADENTCCLEWNTAMEKLTGWPRSEVIG 623


>gi|363547852|gb|AEW26966.1| phytochrome P [Zamia kickxii]
          Length = 590

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/596 (72%), Positives = 495/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAA ++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAVAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGVAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELTQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+  QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLVAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ ++ ++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDTETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547685|gb|AEW26885.1| phytochrome P [Encephalartos cupidus]
          Length = 590

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/599 (72%), Positives = 498/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM NMGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMANMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSF+AFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFEAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547591|gb|AEW26838.1| phytochrome P [Cycas rumphii]
          Length = 589

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/597 (73%), Positives = 500/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALP GDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPRGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIP+A+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPRASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547769|gb|AEW26926.1| phytochrome P [Encephalartos woodii]
          Length = 590

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/599 (72%), Positives = 498/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++  ++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-GDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547870|gb|AEW26975.1| phytochrome P [Zamia paucijuga]
          Length = 590

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/596 (71%), Positives = 497/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+P  DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPTTDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  V+S G +NGWNAK+AELTGLP  EAMGK L+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVNSGGFVNGWNAKLAELTGLPVGEAMGKPLVCDLIYEESMETVERLLHHALRG 590


>gi|363547671|gb|AEW26878.1| phytochrome P [Encephalartos aplanatus]
          Length = 589

 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/599 (72%), Positives = 499/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 1   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 57

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 58  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 113

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQ+LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 114 GAVQSQRLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 173

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 174 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 233

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 234 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 291

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 292 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 351

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA
Sbjct: 352 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMA 411

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 412 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 471

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 472 NVEMDAIHSLQLILRGSFQDI-DDSETKTTIHSRLNDLRVQSMDELSSVAGEMVRLIETA 530

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 589


>gi|363547548|gb|AEW26817.1| phytochrome P [Cycas guizhouensis]
          Length = 589

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/597 (73%), Positives = 499/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLW LVVCHHTS R IPFP+RY CEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWDLVVCHHTSVRAIPFPVRYVCEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGMDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+  +V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHNLVYEESVETVERLLYHALRG 589


>gi|363547687|gb|AEW26886.1| phytochrome P [Encephalartos cycadifolius]
          Length = 590

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/599 (72%), Positives = 499/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A+S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAAMSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGG IGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGVIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
            +E++AIHSLQ+++R SFQ++  ++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NAEMDAIHSLQLILRGSFQDI-HDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547850|gb|AEW26965.1| phytochrome P [Zamia katzeriana]
          Length = 590

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/596 (71%), Positives = 497/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ + S S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMQSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+P  DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPTTDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  V+S G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVNSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547525|gb|AEW26806.1| phytochrome P [Cycas circinalis]
          Length = 589

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/597 (73%), Positives = 500/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAVHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK++LRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHMLRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS   +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGRLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547730|gb|AEW26907.1| phytochrome P [Encephalartos middelburgensis]
          Length = 590

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/596 (72%), Positives = 498/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGAS 150
           IQPFGC+LAVEE T+RII YSEN + MLDL  +S    E   L IG D RTLFTP S  S
Sbjct: 2   IQPFGCVLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEQEFLTIGTDVRTLFTPSSALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A+PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRAMPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA AR
Sbjct: 356 GGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547878|gb|AEW26979.1| phytochrome P [Zamia pseudomonticola]
          Length = 590

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/596 (71%), Positives = 497/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++G+TPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGMTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTA E+KWGGAKHH + KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTANEIKWGGAKHHTDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547565|gb|AEW26825.1| phytochrome P [Cycas micholitzii]
          Length = 589

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/597 (73%), Positives = 500/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+ RIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVPRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAPHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSVRAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGY GAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYTGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIET TA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETVTA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547738|gb|AEW26911.1| phytochrome P [Encephalartos ngoyanus]
          Length = 590

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/599 (72%), Positives = 498/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN     KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVINVNP--KLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVAGEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|406685479|gb|AFS51180.1| phytochrome P, partial [Araucaria rulei]
          Length = 617

 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/600 (71%), Positives = 493/600 (82%), Gaps = 24/600 (4%)

Query: 135 IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
           IG D RTLFT  S  +L KAA + EISL+NPI VHS  ++  KPFYAI+HRIDVG+V+DL
Sbjct: 21  IGTDVRTLFTTSSARALEKAAMAHEISLMNPIWVHS--KNTNKPFYAIVHRIDVGMVMDL 78

Query: 195 EPSKSG-----DPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYD 249
           EP ++G     D ALS AGAVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYD
Sbjct: 79  EPVRTGSGGGGDAALSAAGAVQSQKLAVRAISRLQSLPAGDIGLLCDTVVEDVRELTGYD 138

Query: 250 RVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIP 309
           RVM+Y FH+D+HGEV++EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A P
Sbjct: 139 RVMVYKFHEDEHGEVLAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRAAP 198

Query: 310 VMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS--------- 360
           V VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  +          
Sbjct: 199 VKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNEDEGGGGGGSG 258

Query: 361 -------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILR 413
                  MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+ILR
Sbjct: 259 SGSGRGSMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILR 318

Query: 414 TQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWL 473
           TQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALYYGG CW++GVTPTE+Q+KDIA WL
Sbjct: 319 TQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALYYGGMCWMLGVTPTEAQIKDIADWL 378

Query: 474 LNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGA 533
           L  H D TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGA
Sbjct: 379 LEYHVDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGA 438

Query: 534 KHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEND 593
           KHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ N 
Sbjct: 439 KHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSN- 497

Query: 594 SKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGL 653
           +K   + + N  K+QG+DELS VA EMVRLIETATAPI  VDS+G INGWNAKVAELTGL
Sbjct: 498 TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATAPILAVDSNGLINGWNAKVAELTGL 557

Query: 654 PASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
           P  EAMGKSL+ +++ EES   V+ ++ +AL GEE+KNVE+KLR F  QKQ   +Y++VN
Sbjct: 558 PVGEAMGKSLVHDLIFEESANTVDKMLYQALRGEEEKNVEIKLRTFGPQKQKKAIYLVVN 617


>gi|218683887|gb|ACL00898.1| phytochrome B [Thlaspi perfoliatum]
          Length = 634

 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/607 (68%), Positives = 493/607 (81%), Gaps = 14/607 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E  R DLEPY+G+H+PA DIPQA RFLFKQNRVRMI DCHA PV+V+Q   L Q 
Sbjct: 61  GEVVAESGRDDLEPYIGLHYPATDIPQAPRFLFKQNRVRMIVDCHATPVLVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCH 370
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN            ++SM+LWGLVVCH
Sbjct: 121 MCLVGSTLRAPHGCHSQYMANMGSIASLTMAVIINGNEDDGSNVAGGRNSMRLWGLVVCH 180

Query: 371 HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
           HTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LRTQ LLCDMLLRD+P  I
Sbjct: 181 HTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRVLRTQTLLCDMLLRDSPAGI 240

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           VTQSPSIMDLVKCDGAA  Y G+ + +GV PTE Q+KD+  WLL NH D TGLSTDSL +
Sbjct: 241 VTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPTEVQIKDVVEWLLANHADSTGLSTDSLGD 300

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRS
Sbjct: 301 AGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRS 360

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM--- 607
           SFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E   +SK      Q    M   
Sbjct: 361 SFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKTADGAVQPCRDMAGE 420

Query: 608 QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
           QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+ ++
Sbjct: 421 QGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDL 480

Query: 668 VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGV 727
           +++E++  V+ LI RAL G+EDKNVE+KL+ F  + +   V+++VNAC+S+DY NN+ GV
Sbjct: 481 IYKENEETVDKLISRALGGDEDKNVEVKLKTFSPELRGKAVFVVVNACSSKDYLNNIVGV 540

Query: 728 CFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGW 787
           CFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+DEN  C EWN AME++TGW
Sbjct: 541 CFVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFAADENTSCLEWNTAMERLTGW 600

Query: 788 MRHEVIG 794
            R EVIG
Sbjct: 601 SRGEVIG 607


>gi|363547842|gb|AEW26961.1| phytochrome P [Zamia furfuracea]
          Length = 590

 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/596 (71%), Positives = 497/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ + S S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMQSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+P  DIPQA+RFLF QNRVRMICDC A P+ VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPTTDIPQASRFLFMQNRVRMICDCRATPIRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  V+S G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVNSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547511|gb|AEW26799.1| phytochrome P [Cycas bougainvilleana]
          Length = 589

 Score =  884 bits (2284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/597 (73%), Positives = 499/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVGIVID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGIVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EI 
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIG 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAK VKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKGVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547711|gb|AEW26898.1| phytochrome P [Encephalartos ituriensis]
          Length = 590

 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/599 (71%), Positives = 498/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL E+ IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTERRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|218683853|gb|ACL00881.1| phytochrome B [Boechera laevigata]
          Length = 634

 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/607 (68%), Positives = 496/607 (81%), Gaps = 14/607 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLA+ AIS+LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAIRAISQLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV+V+Q   L Q 
Sbjct: 61  GEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVLVVQDDRLAQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCH 370
           +CLV STLR+PHGCH QYM NMGSIAS+ MAVIIN            + SM+LWGLVVCH
Sbjct: 121 MCLVGSTLRAPHGCHSQYMANMGSIASIAMAVIINGNEEDGSNVASGRSSMRLWGLVVCH 180

Query: 371 HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
           HTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LRTQ LLCDMLLRD+P  I
Sbjct: 181 HTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRVLRTQTLLCDMLLRDSPAGI 240

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           VTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KDI  WLL NH D TGLSTDSL +
Sbjct: 241 VTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKDIVEWLLANHADSTGLSTDSLGD 300

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRS
Sbjct: 301 AGYPGAAALGDAVCGMAVAYITERDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRS 360

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK-VQGNTQ--QNGSKM 607
           SFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E   +SK V G  Q  ++ +  
Sbjct: 361 SFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKTVDGVVQPYRDKAGE 420

Query: 608 QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
           QG+DEL +VA EMVRLIETAT PIF VDS G INGWNAK+AELTGL   EA+GKSL+ ++
Sbjct: 421 QGIDELGAVAREMVRLIETATVPIFAVDSGGRINGWNAKIAELTGLSVEEAVGKSLVSDL 480

Query: 668 VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGV 727
           +++E++  V  L+ RAL G+EDKNVE+KL+    + Q   V+++VNAC+S+DY NN+ GV
Sbjct: 481 IYKENEETVSKLLSRALRGDEDKNVEVKLKTSSPELQGKAVFVVVNACSSKDYLNNIVGV 540

Query: 728 CFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGW 787
           CFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+ EN CC EWN AMEK+TGW
Sbjct: 541 CFVGQDVTGQKIVMDKFINIQGDYKAIVHSPNPLIPPIFAAGENMCCLEWNTAMEKLTGW 600

Query: 788 MRHEVIG 794
            R EVIG
Sbjct: 601 SRSEVIG 607


>gi|363547872|gb|AEW26976.1| phytochrome P [Zamia picta]
          Length = 590

 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/596 (71%), Positives = 497/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ + S S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMQSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+P  DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPTTDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEMKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  V+S G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVNSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547848|gb|AEW26964.1| phytochrome P [Zamia ipetiensis]
          Length = 590

 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/596 (71%), Positives = 495/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A  V VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATTVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  I TQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIATQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+ DIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQITDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++ +K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSKTKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547880|gb|AEW26980.1| phytochrome P [Zamia pumila]
          Length = 590

 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/596 (71%), Positives = 495/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP +  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPANALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAA ++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAVAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGVAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELTQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+  QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLVAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ ++ ++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDTETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547854|gb|AEW26967.1| phytochrome P [Zamia lacandona]
          Length = 590

 Score =  884 bits (2283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/596 (72%), Positives = 497/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ + S S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMQSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHGQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEMKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGK L+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKPLVCDLIYEESMETVERLLHHALRG 590


>gi|363547832|gb|AEW26956.1| phytochrome P [Zamia chigua]
          Length = 590

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/596 (71%), Positives = 496/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EIS +NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISFMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPG A LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGVASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS  WE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLLWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547754|gb|AEW26919.1| phytochrome P [Encephalartos senticosus]
          Length = 590

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/599 (72%), Positives = 497/599 (82%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM NMGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMANMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL  K IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTGKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547818|gb|AEW26949.1| phytochrome P [Macrozamia spiralis]
          Length = 582

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/591 (72%), Positives = 497/591 (84%), Gaps = 13/591 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAA 155
           LAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S  SL KAA
Sbjct: 1   LAVEERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSALSLEKAA 58

Query: 156 ASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKL 215
           A++EISL+NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AGAVQSQKL
Sbjct: 59  AAQEISLMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAGAVQSQKL 114

Query: 216 AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP 275
           AV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEP
Sbjct: 115 AVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLEP 174

Query: 276 YLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGC 335
           YLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL++PLCLV STLR+PHGC
Sbjct: 175 YLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRRPLCLVGSTLRAPHGC 234

Query: 336 HLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQ 395
           H QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF LQ
Sbjct: 235 HAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGLQ 292

Query: 396 LYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCW 455
           L MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  W
Sbjct: 293 LNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMVW 352

Query: 456 LVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKD 515
           ++GV P E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARIT+KD
Sbjct: 353 VLGVAPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAARITAKD 412

Query: 516 FLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIH 575
           FLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIH
Sbjct: 413 FLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIH 472

Query: 576 SLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVD 635
           SLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EMVRLIETATAPI  VD
Sbjct: 473 SLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMVRLIETATAPILAVD 531

Query: 636 SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           S G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 532 SGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLCHALRG 582


>gi|363547814|gb|AEW26947.1| phytochrome P [Macrozamia riedlei]
          Length = 582

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/591 (72%), Positives = 496/591 (83%), Gaps = 13/591 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKAA 155
           LAVEE TFRII YSEN + MLDL  +S    E   L   IG D RTLFTP S  SL KAA
Sbjct: 1   LAVEERTFRIIAYSENAVGMLDLAPQSVPTMEQVFLT--IGTDVRTLFTPSSALSLEKAA 58

Query: 156 ASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKL 215
           A++EISL+NPI +HS  RS  KPFYAI+HRIDVG+VID EP   GD A+S+AGAVQSQKL
Sbjct: 59  AAQEISLMNPIWMHS--RSSGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAGAVQSQKL 114

Query: 216 AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP 275
           AV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEP
Sbjct: 115 AVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLEP 174

Query: 276 YLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGC 335
           YLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHGC
Sbjct: 175 YLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHGC 234

Query: 336 HLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQ 395
           H QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHT PR +PFPLRYACEFL+QAF LQ
Sbjct: 235 HAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTCPRAVPFPLRYACEFLMQAFGLQ 292

Query: 396 LYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCW 455
           L MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  W
Sbjct: 293 LNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMVW 352

Query: 456 LVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKD 515
           ++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARIT+KD
Sbjct: 353 VLGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAARITAKD 412

Query: 516 FLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIH 575
           FLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIH
Sbjct: 413 FLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIH 472

Query: 576 SLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVD 635
           SLQ+++R SFQ++ +++++K   +++ N  K+Q +DELSSVA EM RLIETATAPI  VD
Sbjct: 473 SLQLILRGSFQDI-DDSETKTMIHSRLNDLKVQSMDELSSVASEMARLIETATAPILAVD 531

Query: 636 SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           S G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+C AL G
Sbjct: 532 SGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLCHALRG 582


>gi|363547744|gb|AEW26914.1| phytochrome P [Encephalartos princeps]
          Length = 590

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/599 (71%), Positives = 498/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     +G D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---VGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM NMGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMANMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQ  ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQPNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
            +E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NAEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547715|gb|AEW26900.1| phytochrome P [Encephalartos laevifolius]
          Length = 590

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/599 (71%), Positives = 498/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A+S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAAMSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEV +E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVAAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQS SIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSLSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLS DSLA+AGYPGAA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSMDSLADAGYPGAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|406685581|gb|AFS51231.1| phytochrome P, partial [Podocarpus matudae]
          Length = 600

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/589 (72%), Positives = 487/589 (82%), Gaps = 13/589 (2%)

Query: 135 IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
           IG D RTLFTP S  +L KAA + +ISL+NPI VHS      KPF AI+HRIDVG+V+DL
Sbjct: 15  IGTDVRTLFTPSSARALEKAAMAPDISLMNPIWVHSQYSG--KPFNAIVHRIDVGMVVDL 72

Query: 195 EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
           EP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+Y
Sbjct: 73  EPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMVY 132

Query: 255 NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
            FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ
Sbjct: 133 KFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVNVIQ 192

Query: 315 SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKLW 364
           S+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKLW
Sbjct: 193 SEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKLW 252

Query: 365 GLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLR 424
           GLVVCHHTSPR + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLR
Sbjct: 253 GLVVCHHTSPRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLR 312

Query: 425 DAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLS 484
           DAP  IVTQSPSIMDLVKCDGAALYYGG    +GVTPTE+Q+KDIA WLL  HGD TGLS
Sbjct: 313 DAPIGIVTQSPSIMDLVKCDGAALYYGGTTGCLGVTPTEAQIKDIAEWLLEYHGDSTGLS 372

Query: 485 TDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGG 544
           TDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G 
Sbjct: 373 TDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGR 432

Query: 545 KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNG 604
           +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +   
Sbjct: 433 RMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSR-TKTMVHARLTD 491

Query: 605 SKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLI 664
            K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL+
Sbjct: 492 LKLQGIDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSLV 551

Query: 665 DEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
            +VV EE    VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VN
Sbjct: 552 HDVVLEECAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVN 600


>gi|363547713|gb|AEW26899.1| phytochrome P [Encephalartos kisambo]
          Length = 590

 Score =  883 bits (2281), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/599 (71%), Positives = 497/599 (82%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
              L KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALPLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRVVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|218683939|gb|ACL00923.1| phytochrome D [Pachycladon novaezelandiae]
          Length = 650

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/627 (66%), Positives = 501/627 (79%), Gaps = 18/627 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHR+DVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVR+
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRI 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA PV V+Q   L Q +CLV STLR+PHGCH QYM NM SIASL MAVIIN     
Sbjct: 121 IVDCHASPVRVVQDDRLTQSICLVGSTLRAPHGCHAQYMANMASIASLAMAVIINGSEED 180

Query: 358 --------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEK 409
                   ++SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK
Sbjct: 181 GNCVNTGGRNSMRLWGLVVCHHTSARGIPFPLRYACEFLMQAFGLQLNMELQLALQVSEK 240

Query: 410 NILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDI 469
            +LR Q LLCDMLLRD+P  IVTQ PSIMDLVKC+GAA  Y G+ + +GV PTE+Q+ DI
Sbjct: 241 RVLRMQTLLCDMLLRDSPAGIVTQRPSIMDLVKCNGAAFLYQGKYYPLGVAPTEAQINDI 300

Query: 470 AWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVK 529
             WLL NH D TGLSTDSL +A YPG A LG AVCGMA A IT +DFLFWFRSHT KE+K
Sbjct: 301 VKWLLANHSDSTGLSTDSLGDASYPGTAALGDAVCGMAVAYITKRDFLFWFRSHTEKEIK 360

Query: 530 WGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME 589
           WGGAKHHPE KD+G +MHPRSSF+AFLEVVK+R  PWE +E++AIHSLQ+++RDSF+E E
Sbjct: 361 WGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRCQPWETAEMDAIHSLQLILRDSFKESE 420

Query: 590 EENDSKVQGNTQQNGSKM--QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
               +   G  Q +G  +  QG+ E+ +VA EMVRLIETAT PIF VD  G INGWNAK+
Sbjct: 421 ----AAAAGAVQTHGEDIAEQGMQEIGAVAREMVRLIETATVPIFAVDFDGCINGWNAKI 476

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
           AELTGL   EAMGKSL+ +++++E +  V+ L+  AL G+E K+VE+KL+ F  + Q   
Sbjct: 477 AELTGLSVEEAMGKSLVRDLIYKEYEETVDRLLSCALKGDEGKDVEVKLKIFGPELQGKA 536

Query: 708 VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFA 767
           V++++NAC+S+DY NN+ GVCFVGQD+T  K++MDKFI +QGDY+AII S NPLIPPIFA
Sbjct: 537 VFVVINACSSKDYLNNIVGVCFVGQDVTGHKIVMDKFINIQGDYKAIIHSPNPLIPPIFA 596

Query: 768 SDENACCSEWNAAMEKVTGWMRHEVIG 794
           +DEN CC EWN AMEK+TGW R EVIG
Sbjct: 597 ADENTCCLEWNTAMEKLTGWPRSEVIG 623


>gi|363547844|gb|AEW26962.1| phytochrome P [Zamia hymenophyllidia]
          Length = 590

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/596 (71%), Positives = 497/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + +LDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGILDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+ +AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMPVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q + ELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRVQSMGELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547903|gb|AEW26991.1| phytochrome P [Pseudotsuga menziesii]
          Length = 590

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/597 (72%), Positives = 499/597 (83%), Gaps = 11/597 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGAS 150
           IQPFGC+LAVEE TFRII YS N +EMLDL  +S    E   L IG D RTLFT  S  S
Sbjct: 2   IQPFGCVLAVEETTFRIIAYSGNAVEMLDLAPQSVPSMEPEVLTIGTDVRTLFTAASANS 61

Query: 151 LAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           L KAA ++EISL+NPI VH  NSR   KPFYA++HRIDVG+VID EP   GD  +S AGA
Sbjct: 62  LEKAAVAQEISLMNPIWVHCKNSR---KPFYAVVHRIDVGMVIDFEPL--GDAFMSAAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGYDRVM+Y FH+D+ GEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQSLPCGDIGLLCDTVVENVRELTGYDRVMVYKFHEDERGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV +IQS+EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKLIQSEELMQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGS+ASLVMAVIIN   +MKLWGLVVCHHTSPR +PFPLRYACEFL+
Sbjct: 237 RAPHGCHAQYMANMGSVASLVMAVIING--NMKLWGLVVCHHTSPRAVPFPLRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTDSLA+AGYPGAA LG AVCGMA+A
Sbjct: 355 YGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTDSLADAGYPGAASLGDAVCGMASA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
            ITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RSFPW+  
Sbjct: 415 IITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSFPWDNV 474

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EI+AIHSLQ+++R SFQ++++   +K   +++ N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 475 EIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLNDLRLQGMDELSSVASEMVRLIETATA 533

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS+G +NGWNAKVAELTGLP  EAM  SL+ ++V EES   VE ++  AL G
Sbjct: 534 PILAVDSNGLVNGWNAKVAELTGLPVGEAMSMSLVQDLVFEESVQRVEKMLNNALKG 590


>gi|363547740|gb|AEW26912.1| phytochrome P [Encephalartos nubimontanus]
          Length = 590

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/599 (71%), Positives = 497/599 (82%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIAEWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VD  G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDCGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547838|gb|AEW26959.1| phytochrome P [Zamia fairchildiana]
          Length = 590

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/596 (71%), Positives = 496/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++G+TPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGMTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTA E+KWGGAKHH + KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTANEIKWGGAKHHTDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ + ++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDPIYEESMETVERLLHHALRG 590


>gi|406685607|gb|AFS51244.1| phytochrome P, partial [Podocarpus sylvestris]
          Length = 600

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/589 (71%), Positives = 488/589 (82%), Gaps = 13/589 (2%)

Query: 135 IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
           IG D RTLFTP S  +L KAA + +ISL+NP+ VHS+     KPF AI+HRIDVG+VIDL
Sbjct: 15  IGTDVRTLFTPSSARALEKAAMAPDISLMNPVWVHSHYSG--KPFNAIVHRIDVGMVIDL 72

Query: 195 EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
           EP ++GD A+S AGAVQSQK AV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+Y
Sbjct: 73  EPRRTGDAAMSTAGAVQSQKFAVRAISRLQSLPTGDIGLLCDTVVEDVRELTGYDRVMVY 132

Query: 255 NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
            FH+D+HGEVV+EIRR+DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ
Sbjct: 133 KFHEDEHGEVVAEIRRADLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCSATPVKVIQ 192

Query: 315 SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKLW 364
           S+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKL 
Sbjct: 193 SEELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKLR 252

Query: 365 GLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLR 424
           GLVVCHHTS R + FPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLR
Sbjct: 253 GLVVCHHTSSRAVSFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLR 312

Query: 425 DAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLS 484
           DAP  IVTQSPSIMDLVKCDGAALYYGG  W +GVTPTE+Q+KDIA WLL  HGD TGLS
Sbjct: 313 DAPIGIVTQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEAQIKDIAEWLLEYHGDSTGLS 372

Query: 485 TDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGG 544
           TDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G 
Sbjct: 373 TDSLADAGYPGAATLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGR 432

Query: 545 KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNG 604
           +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++   +K   + +   
Sbjct: 433 RMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLTD 491

Query: 605 SKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLI 664
            K+QG+DELSSVA EMVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL+
Sbjct: 492 LKLQGIDELSSVASEMVRLIETATAPILAIDSNGLVNGWNAKVAELTGLPVGEAMGKSLV 551

Query: 665 DEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
            +VV EES   VE ++ RAL GEE+KNVE+KLR F  QKQ   +Y++VN
Sbjct: 552 HDVVLEESAECVEKMLYRALRGEEEKNVEIKLRTFGTQKQKEAIYLVVN 600


>gi|218683929|gb|ACL00918.1| phytochrome D [Pachycladon exile]
          Length = 650

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/627 (66%), Positives = 501/627 (79%), Gaps = 18/627 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHR+DVGIVIDLEP+++ DPALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVR+
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRI 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA PV V+Q   L Q +CLV STLR+PHGCH QYM NM SIASL MAVIIN     
Sbjct: 121 IVDCHASPVRVVQDDRLTQSICLVGSTLRAPHGCHAQYMANMASIASLAMAVIINGNEED 180

Query: 358 --------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEK 409
                   ++SM+LWGLVVCHHTS R IPFPLRYACEF +QAF LQL MELQ+A+Q++EK
Sbjct: 181 GNCVNTGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFPMQAFGLQLNMELQLALQVSEK 240

Query: 410 NILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDI 469
            +LR Q LLCDMLLRD+P  IVTQ PSIMDLVKC+GAA  Y G+ + +GV PTE+Q+ DI
Sbjct: 241 RVLRMQTLLCDMLLRDSPAGIVTQRPSIMDLVKCNGAAFLYQGKYYPLGVAPTEAQINDI 300

Query: 470 AWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVK 529
             WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT +DFLFWFRSHT KE+K
Sbjct: 301 VKWLLANHSDSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTEKEIK 360

Query: 530 WGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEME 589
           WGGAKHHPE KD+G +MHPRSSF+AFLE VK+R  PWE +E++AIHSLQ+++RDSF+E E
Sbjct: 361 WGGAKHHPEDKDDGQRMHPRSSFQAFLEAVKSRCQPWETAEMDAIHSLQLILRDSFKESE 420

Query: 590 EENDSKVQGNTQQNGSKM--QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
               +   G  Q +G  +  QG+ E+ +VA EMVRLIETAT PIF V+  G INGWNAK+
Sbjct: 421 ----AAAAGAVQTHGEDIAEQGMQEIGAVAREMVRLIETATVPIFAVNIDGCINGWNAKI 476

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
           AELTGL   EAMGKSL+ +++++E +  V+ L+  AL G+E KNVE+KL+ F  + Q   
Sbjct: 477 AELTGLSVEEAMGKSLVRDLIYKEYEETVDRLLSCALKGDEGKNVEVKLKTFGPELQGKA 536

Query: 708 VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFA 767
           V++++NAC+S+DY NN+ GVCFVGQD+T  K++MDKFI +QGDY+AII S NPLIPPIFA
Sbjct: 537 VFVVINACSSKDYLNNIVGVCFVGQDVTGHKIVMDKFINIQGDYKAIIHSPNPLIPPIFA 596

Query: 768 SDENACCSEWNAAMEKVTGWMRHEVIG 794
           +DEN CC EWN AMEK+TGW R EVIG
Sbjct: 597 ADENTCCLEWNTAMEKLTGWPRSEVIG 623


>gi|218683877|gb|ACL00893.1| phytochrome B [Lepidium alyssoides]
          Length = 634

 Score =  882 bits (2279), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/607 (68%), Positives = 489/607 (80%), Gaps = 14/607 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRNLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E +R DLEPY+G+H+PA DIPQA+RFL KQNR+RMI DCHA PV+V+Q   L Q 
Sbjct: 61  GEVVAESKRDDLEPYIGLHYPATDIPQASRFLIKQNRIRMIVDCHATPVLVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCH 370
           +CLV STLR+PH CH QYM NMGSIASL MAVIIN            ++SM+LWGLVVCH
Sbjct: 121 MCLVGSTLRAPHRCHSQYMANMGSIASLAMAVIINGIEEDGGNVAGGRNSMRLWGLVVCH 180

Query: 371 HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
           HTSPR IPFPLRYACEFL+QAF LQL MELQ+A+Q+AEK +LRTQ LLCDMLLRD+P  I
Sbjct: 181 HTSPRCIPFPLRYACEFLMQAFGLQLNMELQLALQMAEKRVLRTQTLLCDMLLRDSPAGI 240

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           VTQSPSIMDLVKCDGAA  Y G  + +GV PTE Q+KDI  WLL NH D TGLSTDSL +
Sbjct: 241 VTQSPSIMDLVKCDGAAFIYHGGYYPLGVAPTEVQIKDIVEWLLANHADSTGLSTDSLGD 300

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRS
Sbjct: 301 AGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRS 360

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM--- 607
           SFKAFLEVVK+ S PWE +E++AIHSLQ+++RDSF+E E   +SK      Q    M   
Sbjct: 361 SFKAFLEVVKSHSQPWETAEMDAIHSLQLILRDSFKESEAAINSKTADGAVQPLRDMTGE 420

Query: 608 QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
           QG+DEL  VA EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+ ++
Sbjct: 421 QGIDELGVVAREMVRLIETATVPIFAVDAGGYINGWNAKIAELTGLSVEEAMGKSLVSDL 480

Query: 668 VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGV 727
           +++++   V  LI RAL GEEDKNVE+KL+ F  + Q   V+++VNAC+S+DY NN+ G+
Sbjct: 481 IYKQNGETVIKLISRALRGEEDKNVEVKLKTFSPELQGKAVFVVVNACSSKDYLNNIIGI 540

Query: 728 CFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGW 787
           CFVGQD+T +K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK++GW
Sbjct: 541 CFVGQDVTGQKIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLSGW 600

Query: 788 MRHEVIG 794
            R EVIG
Sbjct: 601 PRSEVIG 607


>gi|363547577|gb|AEW26831.1| phytochrome P [Cycas panzhihuaensis]
          Length = 589

 Score =  882 bits (2279), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/596 (73%), Positives = 498/596 (83%), Gaps = 10/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TF+II YSEN +EMLDL  +S    E   L +G D RTLFTP S A 
Sbjct: 2   IQPLGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEREVLALGTDVRTLFTPSSAAP 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGAV
Sbjct: 62  LGKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGG IGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGGIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+Q
Sbjct: 238 APHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL Y
Sbjct: 296 AFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALCY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           ITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENVE 474

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATAP
Sbjct: 475 MDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATAP 533

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 534 ILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|218683913|gb|ACL00911.1| phytochrome D [Pachycladon stellatum]
          Length = 651

 Score =  882 bits (2279), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/628 (66%), Positives = 501/628 (79%), Gaps = 18/628 (2%)

Query: 181 AILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVE 240
           AILHR+DVGIV DLEP+++ DPALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVVE
Sbjct: 1   AILHRVDVGIVTDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVE 60

Query: 241 DVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVR 300
            V+ LTGYDRVM+Y FH+D+HGEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVR
Sbjct: 61  SVRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVR 120

Query: 301 MICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS--- 357
           +I DCHA PV V+Q   L Q +CLV STLR+PHGCH QYM NM SIASL MAVIIN    
Sbjct: 121 IIVDCHASPVRVVQDDRLTQSICLVGSTLRAPHGCHAQYMANMASIASLAMAVIINGSEE 180

Query: 358 ---------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAE 408
                    ++SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++E
Sbjct: 181 DGNSVNTGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLALQVSE 240

Query: 409 KNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKD 468
           K +LR Q LLCDMLLRD+P  IVTQ PSIMDLVKC+GAA  Y G+ + +GV PTE+Q+ D
Sbjct: 241 KRVLRMQTLLCDMLLRDSPAGIVTQRPSIMDLVKCNGAAFLYQGKYYPLGVAPTEAQIND 300

Query: 469 IAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEV 528
           I  WLL NH D TGLSTDSL +A YPG A LG AVCGMA A IT +DFLFWFRSHT KE+
Sbjct: 301 IVKWLLANHSDSTGLSTDSLGDASYPGTAALGDAVCGMAVAYITKRDFLFWFRSHTEKEI 360

Query: 529 KWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588
           KWGGAKHHPE KD+G +MHPRSSF+AFLEVVK+R  PWE +E++AIHSLQ+++RDSF+E 
Sbjct: 361 KWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVKSRCQPWETAEMDAIHSLQLILRDSFKES 420

Query: 589 EEENDSKVQGNTQQNGSKM--QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAK 646
           E    +   G  Q +G  +  QG+ E+ +VA EMVRLIETAT PIF VD  G INGWNAK
Sbjct: 421 E----AAAAGAVQTHGEDIAEQGMQEIGAVAREMVRLIETATVPIFAVDFDGCINGWNAK 476

Query: 647 VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706
           +AELTGL   EAMGKSL+ +++++E +  V+ L+  AL G+E K+VE+KL+ F  + Q  
Sbjct: 477 IAELTGLSVEEAMGKSLVRDLIYKEYEETVDRLLSCALKGDEGKDVEVKLKIFGPELQGK 536

Query: 707 VVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIF 766
            V++++NAC+S+DY NN+ GVCFVGQD+T  K++MDKFI +QGDY+AII S NPLIPPIF
Sbjct: 537 AVFVVINACSSKDYLNNIVGVCFVGQDVTGHKIVMDKFINIQGDYKAIIHSPNPLIPPIF 596

Query: 767 ASDENACCSEWNAAMEKVTGWMRHEVIG 794
           A+DEN CC EWN AMEK+TGW R EVIG
Sbjct: 597 AADENTCCLEWNTAMEKLTGWPRSEVIG 624


>gi|363547891|gb|AEW26985.1| phytochrome P [Zamia variegata]
          Length = 590

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/596 (71%), Positives = 496/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ + S S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMQSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+P  DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPTTDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEMKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  V+S G +NGWNAK+AEL GLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVNSGGFVNGWNAKLAELAGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547856|gb|AEW26968.1| phytochrome P [Zamia lawsoniana]
          Length = 590

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/596 (71%), Positives = 496/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ + S S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMQSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+P  DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPTTDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL ME Q+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMESQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  V+S G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVNSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547509|gb|AEW26798.1| phytochrome P [Cycas beddomei]
          Length = 589

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/597 (72%), Positives = 499/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
            QPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   FQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HR+DVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRVDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A  V VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATLVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAVHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK++LRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHMLRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFK FLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKVFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALRG 589


>gi|363547882|gb|AEW26981.1| phytochrome P [Zamia purpurea]
          Length = 590

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/596 (71%), Positives = 497/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + ML+L  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLNLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ + S S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMQSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHGQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEMKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGK L+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKPLVCDLIYEESMETVERLLHHALRG 590


>gi|363547689|gb|AEW26887.1| phytochrome P [Encephalartos dolomiticus]
          Length = 590

 Score =  881 bits (2277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/599 (71%), Positives = 496/599 (82%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDI  WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIVEWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VD  G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDCGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547734|gb|AEW26909.1| phytochrome P [Encephalartos munchii]
          Length = 590

 Score =  881 bits (2277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/599 (71%), Positives = 497/599 (82%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           +QPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   VQPFGCMLAVEERTYRIISYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRS TAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSQTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547661|gb|AEW26873.1| phytochrome P [Dioon purpusii]
          Length = 590

 Score =  881 bits (2277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/599 (71%), Positives = 498/599 (83%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE TFRII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEEGTFRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPAS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EIS +NPI +H  S    K FYAI+HRIDVG+VID EP+  GD A+S+A
Sbjct: 59  ALSLEKAAAAQEISPMNPIWMHGKSSG--KAFYAIVHRIDVGMVIDFEPA--GDAAMSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEP LG+H+PA DIPQA+RFLF QNRVRMICDC A PV V+Q+ EL++PLCLV S
Sbjct: 175 IRRSDLEPCLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVVQAAELRRPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM NMGSIASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEF
Sbjct: 235 TLRAPHGCHAQYMANMGSIASLVMAVVVNG--NMKLWGLVVCHHTSPRAVPFPVRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  H D TGLSTDSLAEAGYPGAA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPPEAQIKDIADWLLECHADWTGLSTDSLAEAGYPGAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            A+IT+KDFLFWFRSHTAKE+KWGGAKHHP+ +D+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AAKITAKDFLFWFRSHTAKEIKWGGAKHHPDDRDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ ++ ++K   + + N  +++G+DELSS+A EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDTETKTMIHARLNDLRVRGMDELSSIASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V+EES   VE L+C AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEATGKSLVCDLVYEESMETVERLLCHALRG 590


>gi|363547830|gb|AEW26955.1| phytochrome P [Zamia angustifolia]
          Length = 590

 Score =  881 bits (2277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/596 (71%), Positives = 494/596 (82%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAA ++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAVAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGVAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELTQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+  QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLVAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVT TE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTLTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ ++ ++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDTETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547605|gb|AEW26845.1| phytochrome P [Cycas simplicipinna]
          Length = 589

 Score =  881 bits (2276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/597 (73%), Positives = 497/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+   D A+S+AGA
Sbjct: 61  SLEKAAVAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--ADAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AI RLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAIPRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSVRAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGA  LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGATSLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+  +V+EES   VE L   AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHNLVYEESVETVERLPYHALRG 589


>gi|363547759|gb|AEW26921.1| phytochrome P [Encephalartos transvenosus]
          Length = 590

 Score =  881 bits (2276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/599 (71%), Positives = 496/599 (82%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLA EE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAAEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAAASVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK  L+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRTLKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547679|gb|AEW26882.1| phytochrome P [Encephalartos caffer]
          Length = 590

 Score =  881 bits (2276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/599 (71%), Positives = 497/599 (82%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           I RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IGRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM NMGSIASLV AV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMANMGSIASLVTAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  +++ +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVRSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547597|gb|AEW26841.1| phytochrome P [Cycas segmentifida]
          Length = 589

 Score =  881 bits (2276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/597 (72%), Positives = 499/597 (83%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLA EE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAAEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAA ++E+SL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAVAQEMSLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+ HGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAAHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSVRTIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWG AKHHP+ KD G +MHPRSSFKAFLEVVK RS  WE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGEAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLSWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGLVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLHHALRG 589


>gi|363547876|gb|AEW26978.1| phytochrome P [Zamia portoricensis]
          Length = 590

 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/594 (71%), Positives = 492/594 (82%), Gaps = 9/594 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAA ++EISL+NP+ +HS      KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAVAQEISLMNPVWMHSKGSG--KPFYAILHRIDVGMVIDFEPV--GGVAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELTQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+  QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLVAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG A CGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAACGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ ++ ++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDTETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHAL 588


>gi|363547874|gb|AEW26977.1| phytochrome P [Zamia poeppigiana]
          Length = 590

 Score =  880 bits (2274), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/596 (71%), Positives = 495/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+Q LCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQLLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLL DAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLLDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+A YPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADARYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++ +K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSKTKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547752|gb|AEW26918.1| phytochrome P [Encephalartos sclavoi]
          Length = 590

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/599 (71%), Positives = 497/599 (82%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRVVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPS+MDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSVMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           L YGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 353 LCYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547828|gb|AEW26954.1| phytochrome P [Zamia amblyphyllidia]
          Length = 590

 Score =  879 bits (2270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/596 (71%), Positives = 494/596 (82%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGD GLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDTGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV +TLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGATLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++G+TPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWMLGMTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTA E+KWGGAKHH + KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTANEIKWGGAKHHADDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++  ++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-NDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKS + ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSFVCDLIYEESMETVERLLHHALRG 590


>gi|363547531|gb|AEW26809.1| phytochrome P [Cycas condaoensis]
          Length = 589

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/597 (73%), Positives = 504/597 (84%), Gaps = 12/597 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S A
Sbjct: 2   IQPFGCMLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAA 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           SL KAAA++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGA
Sbjct: 61  SLEKAAAAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 117 VQSQKLAVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+
Sbjct: 237 RAPHGCHSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSARAIPFPVRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG  WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMFWLLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENV 473

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 474 EMDAIHSLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATA 532

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS G +NGWNAKVAELTGLP  EAMG SL+ ++V+EES   VE L+  AL G
Sbjct: 533 PILAVDSGGIVNGWNAKVAELTGLPVEEAMGMSLVHDLVYEESVETVERLLYHALKG 589


>gi|363547840|gb|AEW26960.1| phytochrome P [Zamia furfuracea]
          Length = 590

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/596 (71%), Positives = 495/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP GCMLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGCMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL+NP+ + S S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAAAAQEISLMNPVWMQSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+P  DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPTTDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL ME Q+A QL EK+IL+TQ LLC+MLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMESQLAAQLTEKHILKTQTLLCNMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG A CGMA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAACGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  V+S G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVNSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547627|gb|AEW26856.1| phytochrome P [Bowenia serrulata]
          Length = 590

 Score =  878 bits (2269), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/596 (71%), Positives = 495/596 (83%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQPFGC+LAVEE TFRI+ YSEN + MLDL  +S       L  IG D RTLFT  S  S
Sbjct: 2   IQPFGCVLAVEERTFRIVAYSENAVGMLDLAPQSVPTMERELLAIGTDVRTLFTASSALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EI L+NP+ +HS  RS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGAV
Sbjct: 62  LEKAAAAQEIGLMNPVWMHS--RSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFP+RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPVRYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQ+ MELQ+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPS MDLVKCDGAALYY
Sbjct: 296 AFGLQVNMELQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSTMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG+ W++GV P E+Q+KDIA WLL  H D TGLSTDSLA+AGYP AA LG AVCGMA AR
Sbjct: 356 GGKAWVLGVAPAEAQIKDIAAWLLECHADWTGLSTDSLADAGYPAAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE +E
Sbjct: 416 ITAKDFLFWFRSHTAKETKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENAE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R  F+++  ++++K   +++ N  ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGPFEDI-NDSETKTIIHSRLNDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLRHALRG 590


>gi|218683947|gb|ACL00927.1| phytochrome D [Stanleya pinnata]
          Length = 652

 Score =  878 bits (2268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/626 (67%), Positives = 501/626 (80%), Gaps = 14/626 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVGI+IDLEP+K+ DPALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRIDVGILIDLEPAKTDDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEV++E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVIAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA P+ V+Q  +L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN     
Sbjct: 121 IVDCHASPLPVVQDDKLTQSICLVGSTLRAPHGCHAQYMANMGSIASLGMAVIINGNEED 180

Query: 358 -----KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNIL 412
                ++SM+LWGL+VCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +L
Sbjct: 181 GNGGGRNSMRLWGLIVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLALQVSEKRVL 240

Query: 413 RTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWW 472
           R Q LLCDMLLRD+P  IVTQSPSIMDLVKC+GAA  Y G+ + +GV PTE+Q+ DI  W
Sbjct: 241 RMQTLLCDMLLRDSPAGIVTQSPSIMDLVKCNGAAFLYQGKYYPLGVAPTEAQINDIVEW 300

Query: 473 LLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGG 532
           LL NH D TGLSTDSL +AGYP AA LG AVCGMA A IT ++FLFWFRSHT KE+KWGG
Sbjct: 301 LLANHSDSTGLSTDSLGDAGYPRAAALGDAVCGMAVACITKRNFLFWFRSHTEKEIKWGG 360

Query: 533 AKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEEN 592
           AKHHPE KD+G +MHPRSSFKAFLEVVK+R  PWE  E++AIHSLQ+++RDSF+E  E  
Sbjct: 361 AKHHPEDKDDGQRMHPRSSFKAFLEVVKSRCQPWETPEMDAIHSLQLILRDSFKE-SEAM 419

Query: 593 DSKVQG--NTQQNGSKM--QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVA 648
           DSK       Q +G  M  QGV+E+ +VA EMVRLIETAT PIF VD  G INGWNAK+A
Sbjct: 420 DSKANAAEAVQPHGENMSEQGVEEIGAVAREMVRLIETATVPIFAVDIDGCINGWNAKIA 479

Query: 649 ELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708
           ELTGL   EAMGKSL+ +++++E +  V+ L+  AL G+E KNVE+KL+ F    Q   V
Sbjct: 480 ELTGLSVDEAMGKSLVQDLIYKEYEETVDRLLSGALRGDEVKNVEVKLKTFGPDLQGKAV 539

Query: 709 YILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFAS 768
           +++VNAC+S+DY NN+ GVCFVG D+T +K + DKFI +Q DY+AII S NPLIPPIFA 
Sbjct: 540 FVVVNACSSKDYLNNIVGVCFVGHDVTCQKTVKDKFINIQRDYKAIIHSPNPLIPPIFAV 599

Query: 769 DENACCSEWNAAMEKVTGWMRHEVIG 794
           DEN CC EWN AMEK+TGW R EVIG
Sbjct: 600 DENTCCLEWNTAMEKLTGWPRSEVIG 625


>gi|363547746|gb|AEW26915.1| phytochrome P [Encephalartos pterogonus]
          Length = 590

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/599 (71%), Positives = 495/599 (82%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQSAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRS TAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSQTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGL   EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLRVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|218683857|gb|ACL00883.1| phytochrome B [Camelina microcarpa]
          Length = 634

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 409/607 (67%), Positives = 489/607 (80%), Gaps = 14/607 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEV++E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV+V+Q   L Q 
Sbjct: 61  GEVLAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVLVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-----------SMKLWGLVVCH 370
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN  D           SM+LWGLVVCH
Sbjct: 121 MCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNDEDGSNVASGRSSMRLWGLVVCH 180

Query: 371 HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
           HTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LRTQ LLCDMLLRD+P  I
Sbjct: 181 HTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRVLRTQTLLCDMLLRDSPAGI 240

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           VTQSPSIMDLVKCDGA+  Y G+ + +GV P+E Q++D+  WLL NH D TGLSTDS  +
Sbjct: 241 VTQSPSIMDLVKCDGASFLYHGKYYALGVAPSEVQIRDVVEWLLANHADSTGLSTDSFGD 300

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYPGAA LG AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MH RS
Sbjct: 301 AGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHSRS 360

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM--- 607
           SFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E   +SK      Q    M   
Sbjct: 361 SFKAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFRESEAAMNSKTVDGAVQPYKYMAGE 420

Query: 608 QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
           QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EAMGKSL+ ++
Sbjct: 421 QGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDL 480

Query: 668 VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGV 727
           +++E++  V  L+ RAL G+EDKNVE+KL+ F  + Q   V+++V+AC+S+DY NN+ GV
Sbjct: 481 IYKENEETVSKLLSRALRGDEDKNVEVKLKTFSPELQGKAVFVVVSACSSKDYLNNIVGV 540

Query: 728 CFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGW 787
           CFV QD+T  K++MDKFI +QGDY+AI+ S NPLIPPIFA+DEN CC EWN AMEK+TG 
Sbjct: 541 CFVAQDVTGRKIVMDKFINIQGDYKAIVHSPNPLIPPIFAADENTCCLEWNTAMEKLTGL 600

Query: 788 MRHEVIG 794
            R EVIG
Sbjct: 601 SRSEVIG 607


>gi|363547691|gb|AEW26888.1| phytochrome P [Encephalartos dyerianus]
          Length = 590

 Score =  877 bits (2266), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/599 (71%), Positives = 497/599 (82%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A+S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAAMSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGG IGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGVIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGA+H P+ KD+G +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAEHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VD  G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDCGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547771|gb|AEW26927.1| phytochrome P [Lepidozamia hopei]
          Length = 582

 Score =  877 bits (2265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/592 (72%), Positives = 496/592 (83%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE TFRII YSEN + MLDL  +S     ++F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEECTFRIIAYSENAVGMLDLAPQSVPTTEQEFLT---IGTDIRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS  RS  KPFYA++HRIDVG+VID EP   GD A+S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHS--RSSGKPFYAVVHRIDVGMVIDFEPV--GDAAMSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPVGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+P+ DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPSTDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMVNMGSIASLVMAVVING--NMKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL MELQ+A QL EK ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMELQLAAQLTEKRILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W++GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARIT+K
Sbjct: 352 WVLGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q VDELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSVDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|363547535|gb|AEW26811.1| phytochrome P [Cycas debaoensis]
          Length = 582

 Score =  875 bits (2261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/591 (73%), Positives = 495/591 (83%), Gaps = 12/591 (2%)

Query: 99  MLAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGASLAKAA 155
           MLAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S ASL KAA
Sbjct: 1   MLAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAASLEKAA 59

Query: 156 ASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKL 215
            ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGAVQSQKL
Sbjct: 60  VAQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGAVQSQKL 115

Query: 216 AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP 275
           AV AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEP
Sbjct: 116 AVRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEP 175

Query: 276 YLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGC 335
           YLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STLR+ HGC
Sbjct: 176 YLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTLRAAHGC 235

Query: 336 HLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQ 395
           H QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+QAF LQ
Sbjct: 236 HSQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSVRAIPFPVRYACEFLMQAFGLQ 293

Query: 396 LYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCW 455
           L MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  W
Sbjct: 294 LNMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMFW 353

Query: 456 LVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKD 515
           L+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKD
Sbjct: 354 LLGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKD 413

Query: 516 FLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIH 575
           FLFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E++AIH
Sbjct: 414 FLFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIH 472

Query: 576 SLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVD 635
           SLQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATAPI  VD
Sbjct: 473 SLQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATAPILAVD 531

Query: 636 SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           S G +NGWNAKVAELTGLP  EAMG SL+  +V+EES   VE L+  AL G
Sbjct: 532 SGGLVNGWNAKVAELTGLPVEEAMGMSLVHNLVYEESVETVERLLYHALRG 582


>gi|363547899|gb|AEW26989.1| phytochrome P [Abies firma]
          Length = 590

 Score =  874 bits (2259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/597 (72%), Positives = 495/597 (82%), Gaps = 11/597 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGAS 150
           +QPFGC+LAVEE TFRII YSEN LEMLDL  +S    E   L IG D RTLFT  S  S
Sbjct: 2   VQPFGCVLAVEETTFRIIAYSENALEMLDLAPQSVPSMEQEVLTIGTDVRTLFTAASANS 61

Query: 151 LAKAAASREISLLNPILVH-SNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
           L KAA + EISL+NPI VH  NSR   KPFYAI+HRIDVG+VID EP   GD  +S AGA
Sbjct: 62  LEKAAVAHEISLMNPIWVHCKNSR---KPFYAIVHRIDVGMVIDFEPL--GDAFMSAAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQ+LP GDIGLLCDTVVE+V++LTGYDRVM+Y FH+D+HG     IR
Sbjct: 117 VQSQKLAVRAISRLQSLPSGDIGLLCDTVVENVRELTGYDRVMVYKFHEDEHGGSCRGIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RS+LEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS+EL QPLCLV STL
Sbjct: 177 RSNLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQSEELMQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLVMAVIIN   ++KLWGLVVCHHTSPR +PFPLRYACEFL+
Sbjct: 237 RAPHGCHAQYMGNMGSIASLVMAVIING--NLKLWGLVVCHHTSPRAVPFPLRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAAL+
Sbjct: 295 QAFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALH 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG CW++GVTPTE+Q+KDIA WLL +HGD TGLSTDSLA+AGYP AA LG AVCGMA+A
Sbjct: 355 YGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTDSLADAGYPSAASLGDAVCGMASA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PW+  
Sbjct: 415 RITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWDNV 474

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           EI+AIHSLQ+++R SFQ++++   +K   +++ N  ++QG+DELSSVA EMVRLIETATA
Sbjct: 475 EIDAIHSLQLILRGSFQDIDDSG-TKTMVHSRLNDLRLQGIDELSSVASEMVRLIETATA 533

Query: 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           PI  VDS+G +NGWNAKVAELTGLP  EAMG SL+ +++ EES   VE ++  AL G
Sbjct: 534 PILAVDSNGLVNGWNAKVAELTGLPVGEAMGMSLVQDLLFEESVERVEKMLYNALRG 590


>gi|363547834|gb|AEW26957.1| phytochrome P [Zamia dressleri]
          Length = 590

 Score =  874 bits (2259), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/596 (71%), Positives = 493/596 (82%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQP G MLAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  S
Sbjct: 2   IQPLGYMLAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KA A++EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAV
Sbjct: 62  LEKAGAAQEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRM+CDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMVCDCRATPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSP  +PFP RYACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPGAVPFPARYACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYY
Sbjct: 296 AFGLQLNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W++GVTPTE+Q+KDIA WLL  HGD TGLSTDS A+AGYPGAA LG AVC MA AR
Sbjct: 356 GGMVWMLGVTPTEAQIKDIADWLLECHGDWTGLSTDSSADAGYPGAASLGDAVCRMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITAKDFLFWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++ +++++K   +++    ++Q +DELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-DDSETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 590


>gi|363547895|gb|AEW26987.1| phytochrome P [Araucaria heterophylla]
          Length = 558

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/565 (75%), Positives = 479/565 (84%), Gaps = 11/565 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNG---LIGIDARTLFTPPSGA 149
           IQPFGCMLAVEE TF II YSEN +EMLDL  +S    ++G    IG D RTLFTP S  
Sbjct: 2   IQPFGCMLAVEETTFLIIAYSENAVEMLDLMPQSVP-NMDGRVMTIGTDVRTLFTPSSAR 60

Query: 150 SLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGA 209
            L KAA + EISL+NPI VHS  ++  KPFYAI+HRIDVG+VIDLEP   GD ALS AGA
Sbjct: 61  LLEKAAMAHEISLMNPIWVHS--KNTNKPFYAIVHRIDVGMVIDLEPV--GDAALSAAGA 116

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           VQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEV++EIR
Sbjct: 117 VQSQKLAVRAISRLQSLPAGDIGLLCDTVVEDVRELTGYDRVMVYKFHEDEHGEVLAEIR 176

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ++ELKQPLCLV STL
Sbjct: 177 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRAAPVKVIQAEELKQPLCLVGSTL 236

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLV 389
           R+PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFPLRYACEFL+
Sbjct: 237 RAPHGCHAQYMANMGSIASLVMAVVING--NMKLWGLVVCHHTSPRAVPFPLRYACEFLM 294

Query: 390 QAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALY 449
           QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLRDAP  IVT SPSIMDLVKCDGAALY
Sbjct: 295 QAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDAPIGIVTHSPSIMDLVKCDGAALY 354

Query: 450 YGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATA 509
           YGG CW++GVTPTE+Q+KDIA WLL  H D TGLSTDSLA+AGYPGAA LG AVCGMA A
Sbjct: 355 YGGMCWMLGVTPTEAQIKDIADWLLEYHVDSTGLSTDSLADAGYPGAASLGDAVCGMAAA 414

Query: 510 RITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVS 569
           RITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  
Sbjct: 415 RITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENV 474

Query: 570 EINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629
           E++AIHSLQ+++R SFQ++++ N +K   + + N  K+QG+DELS VA EMVRLIETATA
Sbjct: 475 EMDAIHSLQLILRGSFQDIDDSN-TKTMVHARLNDLKLQGIDELSCVASEMVRLIETATA 533

Query: 630 PIFGVDSSGTINGWNAKVAELTGLP 654
           PI  VDS+G INGWNAKVAELTGLP
Sbjct: 534 PILAVDSNGLINGWNAKVAELTGLP 558


>gi|363547884|gb|AEW26982.1| phytochrome P [Zamia pygmaea]
          Length = 582

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/589 (71%), Positives = 490/589 (83%), Gaps = 9/589 (1%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGASLAKAAAS 157
           LAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  SL KAA +
Sbjct: 1   LAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALSLEKAAVA 60

Query: 158 REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
           +EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAVQSQKLAV
Sbjct: 61  QEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAVQSQKLAV 116

Query: 218 SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
            AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYL
Sbjct: 117 RAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLEPYL 176

Query: 278 GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
           G+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHGCH 
Sbjct: 177 GLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHGCHA 236

Query: 338 QYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLY 397
           QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+QAF LQL 
Sbjct: 237 QYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQAFGLQLN 294

Query: 398 MELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLV 457
           MELQ+  QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  W++
Sbjct: 295 MELQLVAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMVWML 354

Query: 458 GVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFL 517
           GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARIT+KDFL
Sbjct: 355 GVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAARITAKDFL 414

Query: 518 FWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSL 577
           FWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E++AIHSL
Sbjct: 415 FWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSL 474

Query: 578 QIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSS 637
           Q+++R SFQ++ ++ ++K   +++    ++Q +DELSSVA EMVRLIETATAPI  VDS 
Sbjct: 475 QLILRGSFQDI-DDTETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAPILAVDSG 533

Query: 638 GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 534 GFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 582


>gi|363547723|gb|AEW26904.1| phytochrome P [Encephalartos lehmannii]
          Length = 582

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/592 (71%), Positives = 494/592 (83%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS  +S  KPFYAI+HRIDVG+VID EP   GD A+S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHS--KSFGKPFYAIVHRIDVGMVIDFEPV--GDAAMSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM NMGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMANMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE +E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENAEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|363547501|gb|AEW26794.1| phytochrome P [Cycas aculeata]
          Length = 581

 Score =  872 bits (2252), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/590 (73%), Positives = 493/590 (83%), Gaps = 12/590 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS---EDFELNGLIGIDARTLFTPPSGASLAKAAA 156
           LAVEE TF+II YSEN +EMLDL  +S    + E+  L G D RTLFTP S ASL KAA 
Sbjct: 1   LAVEEITFKIIAYSENAVEMLDLMPQSVPTMEHEVLAL-GTDVRTLFTPSSAASLEKAAV 59

Query: 157 SREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLA 216
           ++EISL+NPI +   SRS  KPFYAI+HRIDVG+VID EP+  GD A+S+AGAVQSQKLA
Sbjct: 60  AQEISLMNPIWM--RSRSSGKPFYAIVHRIDVGMVIDFEPA--GDAAMSVAGAVQSQKLA 115

Query: 217 VSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPY 276
           V AISRLQALPGGDIGLLCDTV EDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPY
Sbjct: 116 VRAISRLQALPGGDIGLLCDTVAEDVRELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPY 175

Query: 277 LGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCH 336
           LG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STLR+ HGCH
Sbjct: 176 LGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAAELNQPLCLVGSTLRAAHGCH 235

Query: 337 LQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQL 396
            QYM NMGSIASLV+AVIIN+  ++KLWGLVVCHHTS R IPFP+RYACEFL+QAF LQL
Sbjct: 236 SQYMANMGSIASLVLAVIINA--NVKLWGLVVCHHTSVRAIPFPVRYACEFLMQAFGLQL 293

Query: 397 YMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWL 456
            MELQ+A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  WL
Sbjct: 294 NMELQLAAQMTEKHILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMFWL 353

Query: 457 VGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDF 516
           +GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPG A LG AVCGMA ARITSKDF
Sbjct: 354 LGVTPTEAQIKDIADWLLECHGDSTGLSTDSLADAGYPGVASLGDAVCGMAAARITSKDF 413

Query: 517 LFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHS 576
           LFWFRSHTAKEVKWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E++AIHS
Sbjct: 414 LFWFRSHTAKEVKWGGAKHHPDDKD-GRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHS 472

Query: 577 LQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDS 636
           LQ+++R SFQ++ +++++K   + + N  ++QG+DELSSVA EMVRLIETATAPI  VDS
Sbjct: 473 LQLILRGSFQDI-DDSETKTMIHARLNDLRVQGIDELSSVASEMVRLIETATAPILAVDS 531

Query: 637 SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
            G +NGWNAKVAELTGLP  EAMG SL+  +V+EES   VE L+  AL G
Sbjct: 532 GGLVNGWNAKVAELTGLPVEEAMGMSLVHNLVYEESVETVERLLYHALRG 581


>gi|363547846|gb|AEW26963.1| phytochrome P [Zamia integrifolia]
          Length = 582

 Score =  871 bits (2251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/589 (71%), Positives = 489/589 (83%), Gaps = 9/589 (1%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGASLAKAAAS 157
           LAVEE TFRII YSEN + MLDL  +S       L  IG D RTLFTP S  SL KAA +
Sbjct: 1   LAVEERTFRIIAYSENAVGMLDLAPQSVPTMERELLTIGTDVRTLFTPASALSLEKAAVA 60

Query: 158 REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
           +EISL+NP+ +HS S    KPFYAILHRIDVG+VID EP   G  A+S+AGAVQSQKLAV
Sbjct: 61  QEISLMNPVWMHSKSSG--KPFYAILHRIDVGMVIDFEPV--GGAAMSVAGAVQSQKLAV 116

Query: 218 SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
            AISRLQALPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYL
Sbjct: 117 RAISRLQALPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLEPYL 176

Query: 278 GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
           G+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STLR+PHGCH 
Sbjct: 177 GLHYPATDIPQASRFLFMQNRVRMICDCRAAPVRVIQAAELTQPLCLVGSTLRAPHGCHA 236

Query: 338 QYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLY 397
           QYM NMGS+ASLVMAV++N   +MKLWGLVVCHHTSPR +PFP+RYACEFL+QAF LQL 
Sbjct: 237 QYMANMGSVASLVMAVVMNV--NMKLWGLVVCHHTSPRAVPFPVRYACEFLMQAFGLQLN 294

Query: 398 MELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLV 457
           MELQ+  QL EK+IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  W++
Sbjct: 295 MELQLVAQLTEKHILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMVWML 354

Query: 458 GVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFL 517
           GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARIT+KDFL
Sbjct: 355 GVTPTEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAARITAKDFL 414

Query: 518 FWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSL 577
           FWFRSHTAKE+KWGGAKHHP+ KD G +MHPRSSFKAFLEVVK RS PWE  E++AIHSL
Sbjct: 415 FWFRSHTAKEIKWGGAKHHPDDKDEGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSL 474

Query: 578 QIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSS 637
           Q+++R SFQ++ ++ ++K   +++    ++Q +DELSSVA EMVRLIETATAPI  VDS 
Sbjct: 475 QLILRGSFQDI-DDTETKTMIHSRLTDLRLQSMDELSSVASEMVRLIETATAPILAVDSG 533

Query: 638 GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           G +NGWNAK+AELTGLP  EAMGKSL+ ++++EES   VE L+  AL G
Sbjct: 534 GFVNGWNAKLAELTGLPVGEAMGKSLVCDLIYEESMETVERLLHHALRG 582


>gi|363547681|gb|AEW26883.1| phytochrome P [Encephalartos cerinus]
          Length = 582

 Score =  871 bits (2250), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/592 (72%), Positives = 491/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM NMGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMANMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARITSK
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITSK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|363547761|gb|AEW26922.1| phytochrome P [Encephalartos trispinosus]
          Length = 582

 Score =  870 bits (2249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/592 (71%), Positives = 492/592 (83%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM NMGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMANMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE +E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENAEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|363547667|gb|AEW26876.1| phytochrome P [Encephalartos aemulans]
          Length = 582

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/592 (71%), Positives = 491/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM NMGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMANMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|363547669|gb|AEW26877.1| phytochrome P [Encephalartos altensteinii]
 gi|363547736|gb|AEW26910.1| phytochrome P [Encephalartos natalensis]
          Length = 582

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/592 (71%), Positives = 492/592 (83%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|363547748|gb|AEW26916.1| phytochrome P [Encephalartos schaijesii]
 gi|363547750|gb|AEW26917.1| phytochrome P [Encephalartos schmitzii]
          Length = 590

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/599 (71%), Positives = 497/599 (82%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+  +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDDRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|400480|emb|CAA52883.1| phytochrome [Psilotum nudum]
          Length = 794

 Score =  870 bits (2247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/791 (53%), Positives = 557/791 (70%), Gaps = 46/791 (5%)

Query: 344  GSIASLVMAVIINSKDS-----------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392
            GSI SLVMAVI+N  D+            +LWG+VVCHHT+PR +PF LR ACEFL+Q F
Sbjct: 1    GSIGSLVMAVIVNDNDAEPSGRGNQPKNRRLWGMVVCHHTTPRAVPFSLRSACEFLMQVF 60

Query: 393  SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGG 452
             LQL ME+++A Q+ EK+ILRTQ LLCDMLLRDAP  IVTQSP+IMDLVKCDGAALYYG 
Sbjct: 61   GLQLNMEIELAAQMREKHILRTQTLLCDMLLRDAPIGIVTQSPNIMDLVKCDGAALYYGK 120

Query: 453  RCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARIT 512
            + WL+G TPTE+Q+KD+A WLL+ H D TGLST+SLA+AG+PGAA LG AVCGMA  +IT
Sbjct: 121  KFWLLGTTPTEAQIKDLADWLLDVHRDSTGLSTESLADAGFPGAAALGDAVCGMAAVKIT 180

Query: 513  SKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEIN 572
             +D+LFWFRSHTAKE+KWGGAKH+P+ KD+G KMHPRSSFKAFLEVVK RS PWE  E++
Sbjct: 181  PRDYLFWFRSHTAKEIKWGGAKHNPDDKDDGKKMHPRSSFKAFLEVVKWRSSPWEDVEMD 240

Query: 573  AIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIF 632
            A+HSLQ+++R SFQ++++ ++SK   + + N   + G+DELS+VA EMVRL+ETATAPI 
Sbjct: 241  AVHSLQLILRGSFQDIDD-SESKTMIHHRLNDLNLHGMDELSTVANEMVRLMETATAPIL 299

Query: 633  GVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692
             VDSSG INGWN K AELTGLP  +AM KSL+ ++V +ES   VE L+  AL GEE++NV
Sbjct: 300  AVDSSGFINGWNGKAAELTGLPLEDAMNKSLVRDLVVDESVSTVERLLYLALQGEEERNV 359

Query: 693  ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752
            E+KL+ F  Q     V ++VNAC SR+   NV GVCFVGQD+T EKV+MDKF R+QGDY 
Sbjct: 360  EIKLKTFGTQADKGPVILVVNACASRNITANVVGVCFVGQDVTGEKVVMDKFTRIQGDYR 419

Query: 753  AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------------ 794
             I+QS NPLIPPIF SDE   CSEWN AM K++GW   EV+G                  
Sbjct: 420  TIVQSPNPLIPPIFGSDEFGYCSEWNPAMVKLSGWKMEEVLGKMNVGEIFGSEMACCRLR 479

Query: 795  ---------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839
                           + GQ ++ FP GFF+RQG++VE  L A++RTD  G + G FCF+ 
Sbjct: 480  GQDAMTKFMIVLNSAMGGQDSDRFPLGFFDRQGKYVEALLIANKRTDGAGAITGVFCFLH 539

Query: 840  ILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQY 899
            I   ++Q AL+ Q         K+KE+AY+RQE++NPL GI F  +LLE +++SE Q+Q 
Sbjct: 540  IASAEVQQALQVQKRSARTALDKLKEVAYMRQEIRNPLYGIMFTRRLLEGTNLSEEQKQI 599

Query: 900  LETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLL 959
            ++TS  CE+Q+  I+D  +   ++ GN++L + EF +G ++DAV+SQ M+  R+K L L+
Sbjct: 600  IDTSAVCEKQLHQILDEDNFENLDHGNIDLDTIEFTMGTVMDAVISQGMIRSREKGLQLI 659

Query: 960  HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019
             + P +IK + L GD++RLQ VL+DFL   VR   S DGWV IKV+P +K +      + 
Sbjct: 660  RETPVDIKNMRLYGDQLRLQQVLADFLTTAVRFTSSSDGWVGIKVVPTMKGLGGGLHVMR 719

Query: 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYF 1079
              +R++HPG+GIP  L++ M++   +  T EG+GL +SRKL+ +MNG V Y+RE   CYF
Sbjct: 720  FDYRISHPGKGIPEDLVQQMFDCSRE-ITQEGMGLSVSRKLVRLMNGDVSYIREAGVCYF 778

Query: 1080 VIDLELKTRGR 1090
            ++++E     R
Sbjct: 779  LVNVEFPLADR 789


>gi|363547673|gb|AEW26879.1| phytochrome P [Encephalartos arenarius]
          Length = 582

 Score =  869 bits (2246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/592 (71%), Positives = 491/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           L VEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LVVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM NMGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMANMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE +E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENAEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|363547721|gb|AEW26903.1| phytochrome P [Encephalartos lebomboensis]
          Length = 582

 Score =  868 bits (2243), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/592 (71%), Positives = 490/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM NMGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMANMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+  +V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCGLVYEESMETVERLLHHALRG 582


>gi|363547699|gb|AEW26892.1| phytochrome P [Encephalartos ghellinckii]
          Length = 582

 Score =  868 bits (2243), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/592 (71%), Positives = 492/592 (83%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFT  S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTASSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A+S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAAMSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM +MGSIASLVMAV+IN   + KLWGLVVCHH SPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHASPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGIV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|363547725|gb|AEW26905.1| phytochrome P [Encephalartos longifolius]
          Length = 582

 Score =  868 bits (2242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/592 (71%), Positives = 490/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM NMGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMANMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLEYHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPR SFKAFLEVVK R  PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRPSFKAFLEVVKRRCLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|363547763|gb|AEW26923.1| phytochrome P [Encephalartos turneri]
          Length = 582

 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/592 (71%), Positives = 491/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESTETVERLLHHALRG 582


>gi|363547675|gb|AEW26880.1| phytochrome P [Encephalartos barteri]
 gi|363547727|gb|AEW26906.1| phytochrome P [Encephalartos macrostrobilus]
          Length = 590

 Score =  867 bits (2241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/599 (71%), Positives = 496/599 (82%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+  +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDDRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEATGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|363547693|gb|AEW26889.1| phytochrome P [Encephalartos eugene-maraisii]
          Length = 582

 Score =  866 bits (2238), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/592 (71%), Positives = 490/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIAEWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           D  G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DCGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|363547765|gb|AEW26924.1| phytochrome P [Encephalartos villosus]
          Length = 582

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/592 (71%), Positives = 491/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQ+
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQR 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNR RMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRARMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVAGEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|363547767|gb|AEW26925.1| phytochrome P [Encephalartos whitelockii]
          Length = 582

 Score =  865 bits (2236), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/592 (71%), Positives = 490/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM +MGSIASLVMAV+IN     KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMASMGSIASLVMAVVING--DTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A +L EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAARLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|363547695|gb|AEW26890.1| phytochrome P [Encephalartos ferox]
          Length = 582

 Score =  865 bits (2235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/592 (71%), Positives = 490/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L   AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLPHHALRG 582


>gi|363547683|gb|AEW26884.1| phytochrome P [Encephalartos concinnus]
          Length = 582

 Score =  865 bits (2234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/592 (71%), Positives = 490/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRS TAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSQTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|218683849|gb|ACL00879.1| phytochrome B [Arabidopsis lyrata]
          Length = 634

 Score =  864 bits (2233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/607 (66%), Positives = 490/607 (80%), Gaps = 14/607 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV+V+Q   L Q 
Sbjct: 61  GEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNAKPVLVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCH 370
           +CLV STLR+PHGCH QYM NMGS ASL MAVIIN            + SM+LWGLVVCH
Sbjct: 121 MCLVGSTLRAPHGCHSQYMANMGSTASLAMAVIINGNEEDGSNAASGRSSMRLWGLVVCH 180

Query: 371 HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
           HTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LRTQ LLCDMLLRD+P  I
Sbjct: 181 HTSSRRIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRVLRTQTLLCDMLLRDSPAGI 240

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           VTQSPSIMDLVKCDGAA  Y G+ + +GV P+E Q+KD+  WLL NH D TGLSTDSL +
Sbjct: 241 VTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKDVVEWLLANHADSTGLSTDSLGD 300

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYP AA LG AVCGMA A IT +DFLFWFRSHTAKE+KWGGAKHHPE +D+G +MHPR 
Sbjct: 301 AGYPDAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPEDEDDGQRMHPRL 360

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK-VQGNTQ--QNGSKM 607
           SF+AFL VVK+RS PWE +E++AIHSLQ+++RDSF+E E   +SK V G  Q  ++ +  
Sbjct: 361 SFQAFLGVVKSRSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKAVDGAVQPCRDMAGE 420

Query: 608 QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
           QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNA +AELTGL   EAMGKSL+ ++
Sbjct: 421 QGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNATIAELTGLSVEEAMGKSLVSDL 480

Query: 668 VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGV 727
           +++ ++  V  L+ RAL G+E+KNVE+KL+ F  + Q    +++VNAC S+DY NN+ GV
Sbjct: 481 IYKGNEETVNKLLSRALRGDEEKNVEVKLKTFSPELQGKAXFVVVNACFSKDYLNNIVGV 540

Query: 728 CFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGW 787
           CFVGQD+T +K++MDKFI +QGDY+AI+ S NPLIPPIFA+DEN CC EWN AMEK+TGW
Sbjct: 541 CFVGQDVTGQKLVMDKFINIQGDYKAIVHSPNPLIPPIFAADENTCCLEWNMAMEKLTGW 600

Query: 788 MRHEVIG 794
            R EVIG
Sbjct: 601 SRSEVIG 607


>gi|363547705|gb|AEW26895.1| phytochrome P [Encephalartos horridus]
          Length = 582

 Score =  864 bits (2232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/592 (71%), Positives = 489/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA+REISL+NPI +HS S    KPFYAI+HRIDVG+VID E    GD A S+AGAVQSQK
Sbjct: 58  AAAREISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFE--SVGDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVE V++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEGVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM NMGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMANMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W + VTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALEVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE +E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENAEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|363547756|gb|AEW26920.1| phytochrome P [Encephalartos septentrionalis]
          Length = 590

 Score =  864 bits (2232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/599 (71%), Positives = 496/599 (82%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+A
Sbjct: 59  ALSLEKAAAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRV++Y FH+D+HGEVV+E
Sbjct: 115 GAVQSQKLAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVVVYRFHEDEHGEVVAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           IRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV S
Sbjct: 175 IRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEF
Sbjct: 235 TLRAPHGCHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVT+SPSIMDLVKCDGAA
Sbjct: 293 LMQAFGLQLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTESPSIMDLVKCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           LYYGG  W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA
Sbjct: 353 LYYGGMVWALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRSHTAKE+KWGGAKH P+ KD+  +MHPRSSFKAFLEVVK RS PWE
Sbjct: 413 AARITAKDFLFWFRSHTAKEIKWGGAKHRPDDKDDDRRMHPRSSFKAFLEVVKRRSLPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
             E++AIHSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETA
Sbjct: 473 NVEMDAIHSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V+EES   VE L+  AL G
Sbjct: 532 TAPILAVDSGGFVNGWNAKLAELTGLPVGEATGKSLVCDLVYEESMETVERLLHHALRG 590


>gi|218683925|gb|ACL00916.1| phytochrome D [Farsetia aegyptia]
          Length = 632

 Score =  864 bits (2232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/605 (67%), Positives = 489/605 (80%), Gaps = 12/605 (1%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E +R+DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV VIQ   L QP
Sbjct: 61  GEVVAESKRNDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVIQDDRLTQP 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHT 372
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN          ++SM+LWGLVVCHHT
Sbjct: 121 MCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNEEDGITVGRNSMRLWGLVVCHHT 180

Query: 373 SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVT 432
           S R IPFPLRYACEFL+QAF LQL MELQ+A Q++EK +LR Q LLCDMLLRD+P  IVT
Sbjct: 181 SARSIPFPLRYACEFLMQAFGLQLNMELQLAQQVSEKRVLRMQTLLCDMLLRDSPAGIVT 240

Query: 433 QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
           QSP+IMDLVKC+GAA  Y G+ + +GV P+E+Q+KDI  WLL NH D TGLSTDSL +AG
Sbjct: 241 QSPNIMDLVKCNGAAFLYRGKYYPLGVAPSETQIKDIVEWLLANHSDSTGLSTDSLGDAG 300

Query: 493 YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
           YP AA LG AVCGMA A IT KDFLFWFRSH+ KE+KWGGAKHHPE+KD+G +MHPRSSF
Sbjct: 301 YPHAAALGDAVCGMAVAYITKKDFLFWFRSHSEKEIKWGGAKHHPENKDDGQRMHPRSSF 360

Query: 553 KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QG 609
           KAFLEVVK+R  PWE +E++AIHSLQ+++RDSF++ E  ++ +   G  Q  G  M   G
Sbjct: 361 KAFLEVVKSRCQPWEAAEMDAIHSLQLILRDSFKDSEAMDSKAAAAGAIQPQGEDMAEHG 420

Query: 610 VDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVH 669
           ++E+ +VA EMVRLIETAT PIF VD  G INGWNAK+AELTGL   EAMGKSL+ ++++
Sbjct: 421 IEEIGAVAREMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEEAMGKSLVRDLIY 480

Query: 670 EESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCF 729
            E +  V+ L+  AL G+E +NVE+KL+ F  ++Q   V+++VNAC+S+DY NN+ GVCF
Sbjct: 481 SEYEETVDRLLSCALQGDEGRNVEIKLKTFGPEQQGKAVFVVVNACSSKDYLNNIVGVCF 540

Query: 730 VGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMR 789
           VGQD+T  K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AME+ TGW R
Sbjct: 541 VGQDVTGHKIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCIEWNTAMEQRTGWPR 600

Query: 790 HEVIG 794
            EVIG
Sbjct: 601 SEVIG 605


>gi|363547701|gb|AEW26893.1| phytochrome P [Encephalartos gratus]
          Length = 582

 Score =  863 bits (2231), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/592 (71%), Positives = 491/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHT PR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTPPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ +  +++ +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLSDLRVRSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES  AVE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMEAVERLLHHALRG 582


>gi|363547703|gb|AEW26894.1| phytochrome P [Encephalartos hildebrandtii]
          Length = 582

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/592 (71%), Positives = 489/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVR ICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRTICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+ Q LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKIQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|218683937|gb|ACL00922.1| phytochrome D [Malcolmia africana]
          Length = 632

 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/605 (66%), Positives = 486/605 (80%), Gaps = 12/605 (1%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEV++E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC A PV V+Q   L Q 
Sbjct: 61  GEVIAESKREDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCSASPVRVVQDDRLAQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS--------KDSMKLWGLVVCHHTS 373
           +CLV STLR+PHGCH QYM NMG+ ASL MAVIIN+        ++SM+LWGLVVCHHTS
Sbjct: 121 ICLVGSTLRAPHGCHAQYMANMGTTASLAMAVIINANEEDGTGGRNSMRLWGLVVCHHTS 180

Query: 374 P-RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVT 432
             R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVT
Sbjct: 181 ASRCIPFPLRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVT 240

Query: 433 QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
           QSPSIMDLVKC+GAA  Y G+ + +GV P+E+Q+ +I  WLL  H D TGLSTDSL++AG
Sbjct: 241 QSPSIMDLVKCNGAAFLYQGKYYSLGVAPSEAQIHEIVEWLLAKHSDSTGLSTDSLSDAG 300

Query: 493 YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
           YP AA LG AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +MHPRSSF
Sbjct: 301 YPKAAALGDAVCGMAVAYITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMHPRSSF 360

Query: 553 KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM---QG 609
           KAFLEVVK+R  PWE +E++AIHSLQ+++RDSF+E E   +SK      Q    M   QG
Sbjct: 361 KAFLEVVKSRCQPWETAEMDAIHSLQLILRDSFKESEAAMNSKSADGAVQPCKDMAGEQG 420

Query: 610 VDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVH 669
           +DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+AELTGL   EA GKSL+ +++H
Sbjct: 421 IDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSVEEATGKSLVSDLIH 480

Query: 670 EESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCF 729
           +E++  V  L+ RAL G+E+KNVE+KL+ F  + +   V+++VNAC+S+DY NN+ GVCF
Sbjct: 481 KENEETVSQLLSRALRGDEEKNVEVKLKTFGSELEGKAVFVVVNACSSKDYLNNIVGVCF 540

Query: 730 VGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMR 789
           VGQDIT +K +MDKFI +QGDY+AI+ S NPLIPPIFA+DEN CC EWN AMEK+TGW R
Sbjct: 541 VGQDITSQKTVMDKFINIQGDYKAIVHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWSR 600

Query: 790 HEVIG 794
            EVIG
Sbjct: 601 SEVIG 605


>gi|218683923|gb|ACL00915.1| phytochrome D [Farsetia aegyptia]
          Length = 632

 Score =  862 bits (2226), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/605 (67%), Positives = 488/605 (80%), Gaps = 12/605 (1%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E +R+DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV VIQ   L QP
Sbjct: 61  GEVVAESKRNDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVIQDDRLTQP 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHT 372
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN          ++SM+LWGLVVCHHT
Sbjct: 121 MCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNEEDGITVGRNSMRLWGLVVCHHT 180

Query: 373 SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVT 432
           S R IPFPLRYACEFL+QAF LQL MELQ+A Q++EK +LR Q LLCDMLLRD+P  IVT
Sbjct: 181 SARSIPFPLRYACEFLMQAFGLQLNMELQLAQQVSEKRVLRMQTLLCDMLLRDSPAGIVT 240

Query: 433 QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
           QSP+IMDLVKC+GAA  Y G+ + +GV P+E+Q+KDI  WLL NH D TGLSTDSL +AG
Sbjct: 241 QSPNIMDLVKCNGAAFLYRGKYYPLGVAPSEAQIKDIVEWLLANHSDSTGLSTDSLGDAG 300

Query: 493 YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
           YP AA LG AVCGMA A IT KDFLFWFRSH+ KE+KWGGAKHHPE+KD+G +MHPRSSF
Sbjct: 301 YPHAAALGDAVCGMAVAYITKKDFLFWFRSHSEKEIKWGGAKHHPENKDDGQRMHPRSSF 360

Query: 553 KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM--QG 609
           KAFLEVVK+R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q  G  M   G
Sbjct: 361 KAFLEVVKSRCQPWEAAEMDAIHSLQLILRDSFKESEAMDSKTAAAGAIQPQGEDMAEHG 420

Query: 610 VDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVH 669
           ++E+ +VA EMVRLIETAT PIF VD  G INGWNAK+AELTGL   EAMGKSL+ ++++
Sbjct: 421 IEEIGAVAREMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEEAMGKSLVRDLIY 480

Query: 670 EESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCF 729
            E +  V+ L+  AL G+E +NVE+KL+ F  ++Q   V+++VNAC+S+DY NN+ GVCF
Sbjct: 481 NEYEETVDRLLSCALQGDEGRNVEIKLKTFGPEQQGKAVFVVVNACSSKDYLNNIVGVCF 540

Query: 730 VGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMR 789
           VGQD+T  K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AM + TGW R
Sbjct: 541 VGQDVTGHKIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCIEWNTAMGQRTGWPR 600

Query: 790 HEVIG 794
            EVIG
Sbjct: 601 SEVIG 605


>gi|363547719|gb|AEW26902.1| phytochrome P [Encephalartos laurentianus]
          Length = 582

 Score =  862 bits (2226), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/592 (71%), Positives = 488/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL NPI +HS S    KPFYAI+H IDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLTNPIWMHSKSSG--KPFYAIVHGIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+ Q LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKIQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIAGWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|218683945|gb|ACL00926.1| phytochrome D [Sisymbrium altissimum]
          Length = 632

 Score =  861 bits (2225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/606 (67%), Positives = 490/606 (80%), Gaps = 14/606 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEV++E +R+DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV V+Q   L Q 
Sbjct: 61  GEVIAESKRNDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD---------SMKLWGLVVCHHT 372
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN  +         SMKLWGLVVCHHT
Sbjct: 121 ICLVGSTLRAPHGCHAQYMANMGSIASLGMAVIINGNENDGNGGGRNSMKLWGLVVCHHT 180

Query: 373 SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVT 432
           S R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q L CDMLLRD+P  IVT
Sbjct: 181 SARCIPFPLRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLSCDMLLRDSPAGIVT 240

Query: 433 QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
           QSPSIMDLVKC+GAA  Y G+ + +GV PTE+Q+ DI  WLL NH D TGLSTDSL +AG
Sbjct: 241 QSPSIMDLVKCNGAAFLYQGKYYSLGVAPTEAQISDIVEWLLANHSDSTGLSTDSLGDAG 300

Query: 493 YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
           YP AA LG AVCGMA A IT  DFLFWFRSHT KE+KWGGAKHHPE KD+G +MHPRSSF
Sbjct: 301 YPRAAALGDAVCGMAVAYITKGDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMHPRSSF 360

Query: 553 KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQ--GNTQQNGSKM--Q 608
           KAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E  E  DSKV   G  Q  G  M  Q
Sbjct: 361 KAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKE-SEVMDSKVNAAGAVQPLGENMTEQ 419

Query: 609 GVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVV 668
           G++E+ +VA EMVRLIETAT PIF VD  G INGWNAK+AELTGL   E+MGKSL+ +++
Sbjct: 420 GMEEIGAVAREMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEESMGKSLVRDLI 479

Query: 669 HEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVC 728
           ++E++  V+ L+  AL G+E KNVE+KL+ F+ Q Q   V+I+VNAC+S+DY NN+ GVC
Sbjct: 480 YKENEETVDRLLSGALRGDEGKNVEVKLKTFDPQLQGKAVFIVVNACSSKDYLNNIVGVC 539

Query: 729 FVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWM 788
           F+GQD+T +K++MDKFI ++GDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TGW 
Sbjct: 540 FMGQDVTSQKIVMDKFINIKGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWP 599

Query: 789 RHEVIG 794
           R EVIG
Sbjct: 600 RSEVIG 605


>gi|406685537|gb|AFS51209.1| phytochrome P, partial [Parasitaxus usta]
          Length = 587

 Score =  860 bits (2222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/589 (70%), Positives = 480/589 (81%), Gaps = 22/589 (3%)

Query: 135 IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
           IG D R LF+P S  +L KA  +RE   +NPI VHS      KPFYAI+HRIDVG+VIDL
Sbjct: 11  IGTDVRRLFSPASARALEKAGMARE---MNPIWVHSQFTG--KPFYAIVHRIDVGMVIDL 65

Query: 195 EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
           EP ++G        AVQSQKLAV AISRLQ+LP GDIGLLCDTVVEDV++LTGYDRVM+Y
Sbjct: 66  EPVRTG------MSAVQSQKLAVRAISRLQSLPAGDIGLLCDTVVEDVRELTGYDRVMVY 119

Query: 255 NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
            FH+D+HGEVV+EIRR DLEPY G+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ
Sbjct: 120 KFHEDEHGEVVAEIRRVDLEPYQGLHYPATDIPQASRFLFMQNRVRMICDCSATPVQVIQ 179

Query: 315 SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKLW 364
           S+EL+QPLCLV STLR+PHGCH QYM NMGSIASLVMAV+IN  D          SMKLW
Sbjct: 180 SQELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVVINGNDEEGGGTSGRSSMKLW 239

Query: 365 GLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLR 424
           GLVVCHHTSPR +PFPLRYACEFL+QAF LQL MELQ+A QL EK+ILRTQ LLCDMLLR
Sbjct: 240 GLVVCHHTSPRAVPFPLRYACEFLMQAFGLQLNMELQLAAQLTEKHILRTQTLLCDMLLR 299

Query: 425 DAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLS 484
           DAP  IV+QSPSIMDLVKCDGAALYYGG  W +GVTPTE Q+KDIA WLL  HGD TGLS
Sbjct: 300 DAPIGIVSQSPSIMDLVKCDGAALYYGGTTWCLGVTPTEGQIKDIADWLLEYHGDSTGLS 359

Query: 485 TDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGG 544
           TDSLA+AGYPG A LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G 
Sbjct: 360 TDSLADAGYPGVASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGR 419

Query: 545 KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNG 604
           +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ N +K   + + N 
Sbjct: 420 RMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSN-TKTMVHARLND 478

Query: 605 SKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLI 664
            K+QG DELSSVA EMVRLIETATAPI  VDS+G +NGWNAKVAELTGLP  EAMGKSL+
Sbjct: 479 LKLQGFDELSSVASEMVRLIETATAPILAVDSNGLVNGWNAKVAELTGLPVGEAMGKSLV 538

Query: 665 DEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
            ++V EES  +V+ ++ RAL GEE+KNVE+KLR F  +KQ   ++++VN
Sbjct: 539 HDLVFEESAESVDKMLYRALRGEEEKNVEIKLRTFGPEKQTEAIFLVVN 587


>gi|363547742|gb|AEW26913.1| phytochrome P [Encephalartos paucidentatus]
          Length = 582

 Score =  860 bits (2221), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/592 (71%), Positives = 489/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           L VEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LGVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSAVSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELGQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+G +MHPRSSFKAFLEVVK RS P E +E++AI
Sbjct: 412 DFLFWFRSHTAKEMKWGGAKHRPDDKDDGRRMHPRSSFKAFLEVVKRRSLPRENAEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|218683909|gb|ACL00909.1| phytochrome D [Camelina microcarpa]
          Length = 631

 Score =  858 bits (2218), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/605 (67%), Positives = 482/605 (79%), Gaps = 13/605 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E +R+DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV V+Q   L QP
Sbjct: 61  GEVVAESKRNDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVVQDDRLTQP 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD----------SMKLWGLVVCHH 371
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN  +          SM+LWGLVVCHH
Sbjct: 121 ICLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNEEDGVNTSGRHSMRLWGLVVCHH 180

Query: 372 TSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIV 431
           TS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+   IV
Sbjct: 181 TSARCIPFPLRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSRAGIV 240

Query: 432 TQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEA 491
            Q PSIMDLVKC+GAA  Y GR + +GV PTE+Q+ DI  WLL NH D TGLSTDSL++A
Sbjct: 241 MQRPSIMDLVKCNGAAFLYQGRYYPLGVAPTEAQINDIVKWLLANHSDSTGLSTDSLSDA 300

Query: 492 GYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSS 551
           GYPGAA LG AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +MHPRSS
Sbjct: 301 GYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMHPRSS 360

Query: 552 FKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM--QG 609
           F+AFLEVVK R  PWE +E++AIHSLQ+++RDSF+E  E  DSK     Q +   M  QG
Sbjct: 361 FQAFLEVVKGRCQPWETAEMDAIHSLQLILRDSFKE-SETMDSKAAAAVQPHKDDMADQG 419

Query: 610 VDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVH 669
           + E+ +VA EMVRLIETAT PIF VD  G INGWN K+AELTGL   EAMGKSL+ ++++
Sbjct: 420 MQEIGAVAREMVRLIETATVPIFAVDIDGCINGWNDKIAELTGLSVEEAMGKSLVRDLIY 479

Query: 670 EESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCF 729
           +E    V+ L+  AL G+E KNVE+KL+ F  + Q   V+++VN+C+S+DY NN+ GVCF
Sbjct: 480 KEYAETVDRLLSCALKGDEGKNVEVKLKNFSPELQGKAVFVVVNSCSSKDYSNNIVGVCF 539

Query: 730 VGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMR 789
           VGQD+T  K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TGW R
Sbjct: 540 VGQDVTGHKIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWPR 599

Query: 790 HEVIG 794
            EVIG
Sbjct: 600 SEVIG 604


>gi|363547824|gb|AEW26952.1| phytochrome P [Stangeria eriopus]
          Length = 590

 Score =  858 bits (2217), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/596 (71%), Positives = 493/596 (82%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGL--IGIDARTLFTPPSGAS 150
           IQPFGCMLAVEE TFRII YSEN   MLDL  +S       L  +G D RTLFTP S AS
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAPAMLDLAPQSVPTMEQELLAVGADVRTLFTPSSAAS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL NPIL++S  RS  KPFYAILHRIDVG+VID EP   GD A S+AGAV
Sbjct: 62  LEKAAAAQEISLTNPILMYS--RSSGKPFYAILHRIDVGMVIDFEPV--GDAATSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQ+LPGGD+GLLCD VVE+V+++ GYDRVM+Y FH+D+HGEVV+EIRR
Sbjct: 118 QSQKLAVRAISRLQSLPGGDLGLLCDAVVEEVREMAGYDRVMVYRFHEDEHGEVVAEIRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRAKPVRVIQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLVMAV+IN   +MKLWGLVVCHHTSPR +PFP+R ACEFL+Q
Sbjct: 238 APHGCHAQYMVNMGSIASLVMAVVINV--NMKLWGLVVCHHTSPRAVPFPVRCACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQ+ MELQ+A QL EK+IL+TQ LLCDMLLRDAP  IVTQ+PS+MDLVKCDGAALYY
Sbjct: 296 AFGLQVNMELQLAAQLTEKHILKTQTLLCDMLLRDAPIGIVTQTPSVMDLVKCDGAALYY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W +GVTP E Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGMVWALGVTPAEPQIKDIADWLLACHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT  DFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E
Sbjct: 416 ITENDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SFQ++  + ++K   +++ N  ++Q +DELS VA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFQDI-GDTETKTMIHSRLNDLRLQSMDELSCVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V+EES  AVE L+C AL G
Sbjct: 535 ILAVDSGGFVNGWNAKLAELTGLPVGEATGKSLVCDLVYEESMEAVERLLCNALRG 590


>gi|363547629|gb|AEW26857.1| phytochrome P [Ceratozamia decumbens]
          Length = 590

 Score =  857 bits (2215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/596 (69%), Positives = 492/596 (82%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGAS 150
           IQPFGCMLAVEE TFRII YSEN   MLDL  +S    E   L IG D RTLFTP S  S
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAAGMLDLAPQSVPTMEKEFLTIGTDVRTLFTPSSAMS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL NPI + S  RS  K FYAI+HRIDVG+VID EP   GD ALS+AGAV
Sbjct: 62  LEKAAAAQEISLANPISMQS--RSSGKAFYAIVHRIDVGMVIDFEPL--GDAALSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALP GDIG+LCD+VV+DV++LTGYDRVM+Y FH+D+HGEV++E+RR
Sbjct: 118 QSQKLAVRAISRLQALPAGDIGMLCDSVVQDVRELTGYDRVMVYRFHEDEHGEVMAEMRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC + PV V+Q+ EL+QPLCLV+STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRSAPVRVLQAAELRQPLCLVSSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLVMAV++N+  + KLWGLVVCHHTSPR +PFP+R ACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSIASLVMAVVVNA--NTKLWGLVVCHHTSPRTVPFPVRCACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A Q  EK IL+TQ LLCDMLLRDAP  IVTQ+PSIMDLV+CDGAAL Y
Sbjct: 296 AFGLQLNMELQLAAQATEKRILKTQTLLCDMLLRDAPIGIVTQTPSIMDLVRCDGAALCY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W +GV P E+Q+KDIA WLL  HGD TG STDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGTVWALGVAPAEAQIKDIADWLLECHGDWTGPSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRS TAKE+KWGGAKHHP+ +D+G +MHPRSSFKAFLEVVK RSFPWE +E
Sbjct: 416 ITAKDFLFWFRSQTAKEIKWGGAKHHPDDRDDGRRMHPRSSFKAFLEVVKRRSFPWENAE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SF+++ ++ ++K   +++ N  ++Q ++ELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFEDI-DDTETKTMVHSRLNDLRVQSMEELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V+E+S   VE L+  AL G
Sbjct: 535 ILAVDSRGLVNGWNAKIAELTGLPVGEATGKSLVGDLVYEDSMETVERLLRNALRG 590


>gi|363547643|gb|AEW26864.1| phytochrome P [Ceratozamia mirandae]
          Length = 590

 Score =  857 bits (2215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/596 (69%), Positives = 491/596 (82%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGAS 150
           IQPFGCMLAVEE TFRII YSEN   MLDL  +S    E   L IG D RTLFTP S  S
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAAGMLDLAPQSVPTMEKEFLTIGTDVRTLFTPSSAMS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL NPI + S  RS  K FYAI+HRIDVG+VID EP   GD ALS+AGAV
Sbjct: 62  LEKAAAAQEISLANPISMQS--RSSGKAFYAIVHRIDVGMVIDFEPL--GDAALSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALP GDIG+LCD+VV+DV++LTGYDRVM+Y FH+D+HGEV++E+RR
Sbjct: 118 QSQKLAVRAISRLQALPAGDIGMLCDSVVQDVRELTGYDRVMVYRFHEDEHGEVMAEMRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC + PV V+Q+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRSAPVRVLQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLVMAV++N+  + KLWGLVVCHH SPR +PFP+R ACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSIASLVMAVVVNA--NTKLWGLVVCHHASPRAVPFPVRCACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A Q  EK IL+TQ LLCDMLLRDAP  IVTQ+PSIMDLV+CDGAAL Y
Sbjct: 296 AFGLQLNMELQLAAQATEKRILKTQTLLCDMLLRDAPIGIVTQTPSIMDLVRCDGAALCY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W +GV P E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGTVWALGVAPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRS TAKE+KWGGAKHHP+ +D+G +MHPRSSFKAFLEVVK RSFPWE +E
Sbjct: 416 ITAKDFLFWFRSQTAKEIKWGGAKHHPDDRDDGRRMHPRSSFKAFLEVVKRRSFPWENAE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SF+++++  ++K   +++ N  ++Q ++ELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFEDIDDA-ETKTMVHSRLNDLRVQSMEELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V+E+S   VE L+  AL G
Sbjct: 535 ILAVDSCGLVNGWNAKIAELTGLPVGEATGKSLVGDLVYEDSMETVERLLRNALRG 590


>gi|363547647|gb|AEW26866.1| phytochrome P [Ceratozamia morettii]
          Length = 590

 Score =  857 bits (2213), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/596 (69%), Positives = 491/596 (82%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGAS 150
           IQPFGCMLAVEE TFRII YSEN   MLDL  +S    E   L IG D RTLFTP S  S
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAAGMLDLAPQSVPTMEKEFLTIGTDVRTLFTPSSAMS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL NPI + S  RS  K FYAI+HRIDVG+VID EP   GD ALS+AGAV
Sbjct: 62  LEKAAAAQEISLANPISMQS--RSSGKAFYAIVHRIDVGMVIDFEPL--GDAALSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALP GDIG+LCD+VV+DV++LTGYDRVM+Y FH+D+HGEV++E+RR
Sbjct: 118 QSQKLAVRAISRLQALPAGDIGMLCDSVVQDVRELTGYDRVMVYRFHEDEHGEVMAEMRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC + PV V+Q+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRSAPVRVLQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLVMAV++N+  + KLWGLVVCHHTSPR +PFP+R ACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSIASLVMAVVVNA--NTKLWGLVVCHHTSPRTVPFPVRCACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A Q  EK IL+TQ LLCDMLLRDAP  IVTQ+PSIMDLV+CDGAAL Y
Sbjct: 296 AFGLQLNMELQLAAQATEKRILKTQTLLCDMLLRDAPIGIVTQTPSIMDLVRCDGAALCY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W +GV P E+Q++DIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGTVWALGVAPAEAQIRDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRS TAKE+KWGG KHHP+ +D+G +MHPRSSFKAFLEVVK RSFPWE +E
Sbjct: 416 ITAKDFLFWFRSQTAKEIKWGGEKHHPDDRDDGRRMHPRSSFKAFLEVVKRRSFPWENAE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SF+++ ++ ++K   +++ N  ++Q ++ELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFEDI-DDTETKTMVHSRLNDLRVQSMEELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V+E+S   VE L+  AL G
Sbjct: 535 ILAVDSRGLVNGWNAKIAELTGLPVGEATGKSLVGDLVYEDSMETVERLLRNALRG 590


>gi|363547653|gb|AEW26869.1| phytochrome P [Ceratozamia zaragozae]
          Length = 590

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/596 (69%), Positives = 490/596 (82%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGAS 150
           IQPFGCMLAVEE TFRII YSEN   MLDL  +S    E   L IG D RTLFTP S  S
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAAGMLDLAPQSVPTMEKEFLTIGTDVRTLFTPSSAMS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL NPI + S  RS  K FYAI+HRIDVG+VID EP   GD ALS+AGAV
Sbjct: 62  LEKAAAAQEISLANPISMQS--RSSGKAFYAIVHRIDVGMVIDFEPL--GDAALSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALP GDIG+LCD+VV+DV++LTGYDRVM+Y FH+D+HGEV++E+RR
Sbjct: 118 QSQKLAVRAISRLQALPAGDIGMLCDSVVQDVRELTGYDRVMVYRFHEDEHGEVMAEMRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC + PV V+Q+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRSAPVRVLQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLVMAV++N+  + KLWGLVVCHHTSPR +PFP+R ACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSIASLVMAVVVNA--NTKLWGLVVCHHTSPRTVPFPVRCACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A Q  EK IL+TQ LLCDMLLRDAP  IVTQ+PSIMDLV+CDGAAL Y
Sbjct: 296 AFGLQLNMELQLAAQATEKRILKTQTLLCDMLLRDAPIGIVTQTPSIMDLVRCDGAALCY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W +GV P E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGTVWALGVAPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRS TAKE+KWGGAKHHP+ +D+G +MHPRSSFKAFLEVVK RSFPWE +E
Sbjct: 416 ITAKDFLFWFRSQTAKEIKWGGAKHHPDDRDDGRRMHPRSSFKAFLEVVKRRSFPWENAE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SF+++ ++ ++K   +++ N  ++  ++ELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFEDI-DDTETKTMVHSRLNDLRVHSMEELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V+E+S   VE L+  A  G
Sbjct: 535 ILAVDSRGLVNGWNAKIAELTGLPVGEATGKSLVGDLVYEDSMETVERLLRNASRG 590


>gi|363547633|gb|AEW26859.1| phytochrome P [Ceratozamia huastecorum]
          Length = 590

 Score =  854 bits (2207), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/596 (69%), Positives = 490/596 (82%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSR-SEDFELNGL-IGIDARTLFTPPSGAS 150
           IQPFGCMLAVEE TFRII YSEN   MLDL  +     E   L IG D RTLFTP S  S
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAAGMLDLAPQLVPTMEKEFLTIGTDVRTLFTPSSAMS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL NPI + S  RS  K FYAI+HRIDVG+VID EP   GD ALS+AGAV
Sbjct: 62  LEKAAAAQEISLANPISIQS--RSSGKAFYAIVHRIDVGMVIDFEPL--GDAALSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALP GDIG+LCD+VV+DV++LTGYDRVM+Y FH+D+HGEV++E+RR
Sbjct: 118 QSQKLAVRAISRLQALPAGDIGMLCDSVVQDVRELTGYDRVMVYRFHEDEHGEVMAEMRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC + PV V+Q+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFIQNRVRMICDCRSAPVRVLQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLVMAV++N+  + KLWGLVVCHHTSPR +PFP+R ACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSIASLVMAVVVNA--NTKLWGLVVCHHTSPRTVPFPVRCACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MEL++A Q  EK IL+TQ LLCDMLLRDAP  IVTQ+PSIMDLV+CDGAAL Y
Sbjct: 296 AFGLQLNMELRLAAQATEKRILKTQTLLCDMLLRDAPIGIVTQTPSIMDLVRCDGAALCY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W +GV P E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGTVWALGVAPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRS TAKE+KWGGAKHHP+ +D+  +MHPRSSFKAFLEVVK RSFPWE +E
Sbjct: 416 ITAKDFLFWFRSQTAKEIKWGGAKHHPDDRDDARRMHPRSSFKAFLEVVKRRSFPWENAE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SF+++ ++ ++K   +++ N  ++Q ++ELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFEDI-DDTETKTMVHSRLNDLRVQSMEELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V+E+S   VE L+  AL G
Sbjct: 535 ILAVDSRGLVNGWNAKIAELTGLPVGEATGKSLVGDLVYEDSMETVERLLRNALRG 590


>gi|363547645|gb|AEW26865.1| phytochrome P [Ceratozamia mixeorum]
          Length = 590

 Score =  854 bits (2207), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/599 (69%), Positives = 490/599 (81%), Gaps = 15/599 (2%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPS 147
           IQPFGCMLAVEE TFRII YSEN   MLDL  +S     E+F     +G D RTLFTP S
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAAGMLDLAPQSVPTMEEEFLT---VGTDVRTLFTPSS 58

Query: 148 GASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLA 207
             SL KAAA++EISL NPI + S  RS  K FYAI+HRIDVG+VID EP   GD ALS+A
Sbjct: 59  ATSLEKAAAAQEISLANPISMQS--RSSGKAFYAIVHRIDVGMVIDFEPL--GDAALSVA 114

Query: 208 GAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSE 267
           GAVQSQKLAV AISRLQALP GDIG+LCD+VV+DV++LTGYDRVM+Y FH+D+HGEV++E
Sbjct: 115 GAVQSQKLAVRAISRLQALPAGDIGMLCDSVVQDVRELTGYDRVMVYRFHEDEHGEVMAE 174

Query: 268 IRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNS 327
           +RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC + PV V+Q+ ELKQPLCLV S
Sbjct: 175 MRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRSAPVRVLQAAELKQPLCLVGS 234

Query: 328 TLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387
           TLR+PHGCH QYM NMGSIASLVMAV++N+  + KLWGLVVCHHTSPR +PFP+R ACEF
Sbjct: 235 TLRAPHGCHAQYMANMGSIASLVMAVVVNA--NTKLWGLVVCHHTSPRAVPFPVRCACEF 292

Query: 388 LVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAA 447
           L+QAF LQL MELQ+A Q  EK IL+TQ LLCDMLLRDAP  IVTQ+PSIMDLV+CDGAA
Sbjct: 293 LMQAFGLQLNMELQLATQATEKRILKTQTLLCDMLLRDAPIGIVTQTPSIMDLVRCDGAA 352

Query: 448 LYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507
           L YGG  W +GV P E+Q+K IA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA
Sbjct: 353 LCYGGTVWALGVAPAEAQIKGIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMA 412

Query: 508 TARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWE 567
            ARIT+KDFLFWFRS TAKE+KWGGAKHHP+ +D+G +MHPRSSFKAFLEVVK RSFPWE
Sbjct: 413 AARITAKDFLFWFRSQTAKEIKWGGAKHHPDDRDDGRRMHPRSSFKAFLEVVKRRSFPWE 472

Query: 568 VSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETA 627
            +E++AIHSLQ+++  SF ++ ++ ++K   +++ N  ++Q ++ELSSVA EMVRLIETA
Sbjct: 473 NAEMDAIHSLQLILHGSFGDI-DDTETKTMVHSRLNDLRVQSMEELSSVASEMVRLIETA 531

Query: 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           TAPI  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V+E+S   VE L+  AL G
Sbjct: 532 TAPILAVDSRGLVNGWNAKIAELTGLPVGEATGKSLVGDLVYEDSMETVERLLRNALRG 590


>gi|363547651|gb|AEW26868.1| phytochrome P [Ceratozamia whitelockiana]
          Length = 590

 Score =  853 bits (2204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/596 (69%), Positives = 490/596 (82%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGAS 150
           IQPFGCMLAVEE TFRII YSEN   MLDL  +S    E   L IG D RTL TP S  S
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENATGMLDLAPQSVPTMEKEFLTIGTDVRTLLTPSSAMS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL NPI + S  RS  K FYAI+HRIDVG+VID EP   GD ALS+AGAV
Sbjct: 62  LEKAAAAQEISLANPISMQS--RSSGKAFYAIVHRIDVGMVIDFEPL--GDAALSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALP GDIG+LCD+VV+DV++LTGYDRVM+Y FH+D+HGEV++E+RR
Sbjct: 118 QSQKLAVRAISRLQALPAGDIGMLCDSVVQDVRELTGYDRVMVYRFHEDEHGEVMAEMRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC + PV V+Q+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRSAPVRVLQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLVMAV++N+  + KLWGLVVCHHTSPR +PFP+R ACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSIASLVMAVVVNA--NTKLWGLVVCHHTSPRAVPFPVRCACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A Q  EK IL+TQ LLCDMLLRDAP  IVTQ+PSIMDLV+CDGAAL Y
Sbjct: 296 AFGLQLNMELQLAAQATEKRILKTQTLLCDMLLRDAPIGIVTQTPSIMDLVRCDGAALCY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W +GV   E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGTVWALGVALAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRS TAKE+KWGGAKHHP+ +D+G +MHPRSSFKAFLEVVK RSFPWE +E
Sbjct: 416 ITAKDFLFWFRSQTAKEIKWGGAKHHPDDRDDGRRMHPRSSFKAFLEVVKRRSFPWENAE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SF+++++  ++K   +++ N  ++Q ++ELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFEDIDDA-ETKTMVHSRLNDLRVQSMEELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V+E+S   VE L+  AL G
Sbjct: 535 ILAVDSRGLVNGWNAKIAELTGLPVGEATGKSLVGDLVYEDSMETVERLLRNALRG 590


>gi|218683897|gb|ACL00903.1| phytochrome D [Arabidopsis halleri]
          Length = 635

 Score =  853 bits (2203), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/608 (66%), Positives = 486/608 (79%), Gaps = 15/608 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V+Q   L Q 
Sbjct: 61  GEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVC 369
           +CLV STLR+PHGCH QYMTNMGSIASL MAVIIN             ++SM+LWGLVVC
Sbjct: 121 ICLVGSTLRAPHGCHAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRNSMRLWGLVVC 180

Query: 370 HHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFS 429
           HHTS R IPFPLR ACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  
Sbjct: 181 HHTSARCIPFPLRCACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPTG 240

Query: 430 IVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLA 489
           IVTQ PSIMDLVKC+GAA  Y G+ + +GV PTE+Q+ DI  WLL NH D TGLSTDSL 
Sbjct: 241 IVTQRPSIMDLVKCNGAAFLYQGKYYSLGVAPTEAQINDIVEWLLANHSDSTGLSTDSLG 300

Query: 490 EAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPR 549
           +AGYP AA LG AVCGMA A IT +DFLFWFRSHT KE++WGGAKHHPE KD+G +MHPR
Sbjct: 301 DAGYPRAAALGDAVCGMAVACITKRDFLFWFRSHTEKEIRWGGAKHHPEDKDDGQRMHPR 360

Query: 550 SSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM- 607
           +SF+AFLEVVK+R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M 
Sbjct: 361 ASFQAFLEVVKSRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKASAPGGVQPHGDDMA 420

Query: 608 -QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
            QG+ E+ +VA EM+RLIETAT PIF VD  G INGWNAK+AELTGL   EAMGKSL+ +
Sbjct: 421 EQGLQEIGTVAREMIRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEEAMGKSLVRD 480

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           ++++E +   + L+  AL G+E KNVE+KL+ F  + Q   V+++VNAC+S+DY NN+ G
Sbjct: 481 LIYKEYEETADRLLSCALKGDEGKNVEVKLKTFAPELQGKAVFVVVNACSSKDYLNNIVG 540

Query: 727 VCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTG 786
           VCFVGQD+T  K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TG
Sbjct: 541 VCFVGQDVTGHKIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCIEWNTAMEKLTG 600

Query: 787 WMRHEVIG 794
           W R EVIG
Sbjct: 601 WPRSEVIG 608


>gi|363547677|gb|AEW26881.1| phytochrome P [Encephalartos bubalinus]
          Length = 582

 Score =  853 bits (2203), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/592 (71%), Positives = 490/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S  SL KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALSLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACEFL+QAF L
Sbjct: 234 CHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEFLMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+  +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDDRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|218683901|gb|ACL00905.1| phytochrome D [Arabidopsis lyrata]
          Length = 636

 Score =  853 bits (2203), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/609 (66%), Positives = 485/609 (79%), Gaps = 16/609 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVV+ V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVCAISHLQSLPGGDIKLLCDTVVDSVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V+Q   L Q 
Sbjct: 61  GEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-------------KDSMKLWGLVV 368
           +CLV STLR+PHGCH QYMTNMGSIASL MAVIIN              ++SM+LWGLVV
Sbjct: 121 ICLVGSTLRAPHGCHAQYMTNMGSIASLAMAVIINGNEEDGNGGLNTGGRNSMRLWGLVV 180

Query: 369 CHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPF 428
           CHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P 
Sbjct: 181 CHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPT 240

Query: 429 SIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSL 488
            IVTQ PSIMDLVKC+GAA  Y G+ + +GV PTE+Q+ DI  WLL NH D TGLSTDSL
Sbjct: 241 GIVTQRPSIMDLVKCNGAAFLYQGKYYSLGVAPTEAQINDIVEWLLANHSDSTGLSTDSL 300

Query: 489 AEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHP 548
            +AGYP AA LG AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +MHP
Sbjct: 301 GDAGYPRAAALGDAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMHP 360

Query: 549 RSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM 607
           RSSF+AFLEVVK++  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M
Sbjct: 361 RSSFQAFLEVVKSQCQPWETAEMDAIHSLQLILRDSFKESEAMDSKASAPGGVQPHGDDM 420

Query: 608 --QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLID 665
             QG+ E+ +VA EM+RLIETAT PIF VD  G INGWNAK+AELTGL   EAMGKSL+ 
Sbjct: 421 AEQGMQEIGAVAREMIRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEEAMGKSLVR 480

Query: 666 EVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVK 725
           +++++E +   + L+  AL G+E KNVE+KLR F  + Q   V+++VNAC+S+DY NN+ 
Sbjct: 481 DLIYKEYKETADRLLSCALKGDEGKNVEVKLRTFGPELQGKAVFVVVNACSSKDYLNNIV 540

Query: 726 GVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVT 785
           GVCFVGQD+T  K +MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+T
Sbjct: 541 GVCFVGQDVTGHKFVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCIEWNTAMEKLT 600

Query: 786 GWMRHEVIG 794
           GW R EVIG
Sbjct: 601 GWPRSEVIG 609


>gi|218683941|gb|ACL00924.1| phytochrome D [Thlaspi perfoliatum]
          Length = 631

 Score =  849 bits (2194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/606 (65%), Positives = 487/606 (80%), Gaps = 15/606 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAV SQKLAV AIS LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVHSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEV++E +R DLEPY+G+H+PA DIPQA+RFLF+Q+RVRMI DCHA PV V+Q   L Q 
Sbjct: 61  GEVIAESKRDDLEPYIGLHYPATDIPQASRFLFRQSRVRMIVDCHASPVRVVQEDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-------------SMKLWGLVV 368
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN  +             SM+LWGL+V
Sbjct: 121 ICLVGSTLRAPHGCHAQYMANMGSIASLGMAVIINGNEEDGNGVNNGGGRNSMRLWGLIV 180

Query: 369 CHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPF 428
           CHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+QLAEK +LR Q LLCDMLLRD+P 
Sbjct: 181 CHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLALQLAEKRVLRMQTLLCDMLLRDSPA 240

Query: 429 SIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSL 488
            IVTQSPSIMDLVKC+GAA  Y G+ + +GV P+E+Q+ +I  WLL NH D TGL TDSL
Sbjct: 241 GIVTQSPSIMDLVKCNGAAFLYQGKYYSLGVAPSEAQINEIVEWLLANHSDSTGLGTDSL 300

Query: 489 AEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHP 548
            +AGYP A++LG AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +MHP
Sbjct: 301 GDAGYPRASVLGDAVCGMAVAYITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMHP 360

Query: 549 RSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQ 608
           RSSFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E  E  DS      ++N ++ Q
Sbjct: 361 RSSFKAFLEVVKSRSQPWEAAEMDAIHSLQLILRDSFKE-SEARDSIAIAAERENMTE-Q 418

Query: 609 GVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVV 668
           G++E+ +VA EMVRLIETA  PIF VD  G INGWNAK+AELTGL   EAMGKS+I +++
Sbjct: 419 GMEEIGAVAREMVRLIETARVPIFAVDIDGCINGWNAKIAELTGLSVEEAMGKSVIRDLI 478

Query: 669 HEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVC 728
           +++ + AV+ L+ RAL G+E +NVE+KL+ F  + Q   V+++VNAC+S+DY +N+ GVC
Sbjct: 479 YKDCEEAVDMLLSRALKGDEGENVEVKLKTFGPELQGKAVFVVVNACSSKDYSSNIVGVC 538

Query: 729 FVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWM 788
           FVGQD+T +K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+T W 
Sbjct: 539 FVGQDVTSQKIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCIEWNTAMEKLTSWS 598

Query: 789 RHEVIG 794
           R +VIG
Sbjct: 599 RSQVIG 604


>gi|363547637|gb|AEW26861.1| phytochrome P [Ceratozamia mexicana]
          Length = 590

 Score =  849 bits (2194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/596 (69%), Positives = 488/596 (81%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGAS 150
           IQPFGCMLAVEE TFRII YSEN   MLDL  +S    E   L IG D RTLFTP S  S
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAAGMLDLAPQSVPTMEKEFLTIGTDVRTLFTPSSAMS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL NPI + S  RS  K FYAI+HRIDVG+VID EP   GD ALS+AGAV
Sbjct: 62  LEKAAAAQEISLANPISMQS--RSSGKAFYAIVHRIDVGMVIDFEPL--GDAALSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALP GDIG+LCD+VV+DV++LTGYDRVM+Y FH+D+HGEV++E+RR
Sbjct: 118 QSQKLAVRAISRLQALPAGDIGMLCDSVVQDVRELTGYDRVMVYRFHEDEHGEVMAEMRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC + PV V+Q+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFIQNRVRMICDCRSAPVRVLQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLVMAV++N+  + KLWGLVVCHHTSPR +PFP+R ACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSIASLVMAVVVNA--NTKLWGLVVCHHTSPRTVPFPVRCACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A Q  EK IL+T  LLCDMLLRDAP  IVTQ+PSIMDLV+CDGAAL Y
Sbjct: 296 AFGLQLNMELQLAAQATEKRILKTLTLLCDMLLRDAPIGIVTQTPSIMDLVRCDGAALCY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W +GV P E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGTVWALGVAPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRS TAKE+KWGG KHHP+ +D+  +MHPRSSFKAFLEVVK RSFPWE +E
Sbjct: 416 ITAKDFLFWFRSQTAKEIKWGGEKHHPDDRDDARRMHPRSSFKAFLEVVKRRSFPWENAE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SF+++ ++ ++K   +++ N  ++Q ++ELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFEDI-DDTETKTMVHSRLNDLRVQSMEELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V+E+S   VE L+  A  G
Sbjct: 535 ILAVDSRGLVNGWNAKIAELTGLPVGEATGKSLVGDLVYEDSMETVERLLRNASRG 590


>gi|218683899|gb|ACL00904.1| phytochrome D [Arabidopsis halleri]
          Length = 608

 Score =  849 bits (2193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/608 (65%), Positives = 484/608 (79%), Gaps = 15/608 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVV+ V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVDSVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DC+A PV V+Q   L Q 
Sbjct: 61  GEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVC 369
           +CLV STLR+PHGCH QYMTNMGSIASL MA+IIN             ++SM+LWGLVVC
Sbjct: 121 ICLVGSTLRAPHGCHAQYMTNMGSIASLAMAIIINGNEEDGNGVNTGGRNSMRLWGLVVC 180

Query: 370 HHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFS 429
           HHTS R IPFPLR ACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  
Sbjct: 181 HHTSARCIPFPLRCACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPTG 240

Query: 430 IVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLA 489
           IVTQ PSIMDLVKC+GAA  Y G+ + +GV PTE+Q+ DI  WLL NH D TGLSTDSL 
Sbjct: 241 IVTQRPSIMDLVKCNGAAFLYQGKYYSLGVAPTEAQINDIGEWLLANHSDSTGLSTDSLG 300

Query: 490 EAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPR 549
           +AGYP AA LG AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +MHPR
Sbjct: 301 DAGYPRAAALGDAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMHPR 360

Query: 550 SSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM- 607
           +SF+AFLEVVK+R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M 
Sbjct: 361 ASFQAFLEVVKSRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKASAPGGVQPHGDDMA 420

Query: 608 -QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
            QG+ E+ +VA EM+RLIETAT PIF VD  G INGWNAK+AELTGL   EAMGKSL+ +
Sbjct: 421 EQGLQEIGTVAREMIRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVEEAMGKSLVRD 480

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           ++++E +   + L+  AL G+E KNVE+KL+ F  + Q   V+++VNAC+S+DY NN+ G
Sbjct: 481 LIYKEYEETADRLLSCALKGDEGKNVEVKLKTFAPELQGKAVFVVVNACSSKDYLNNIVG 540

Query: 727 VCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTG 786
           VCFVGQD+   K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TG
Sbjct: 541 VCFVGQDVIGHKIVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCIEWNTAMEKLTG 600

Query: 787 WMRHEVIG 794
           W R EVIG
Sbjct: 601 WPRSEVIG 608


>gi|363547635|gb|AEW26860.1| phytochrome P [Ceratozamia latifolia]
          Length = 590

 Score =  848 bits (2192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/596 (69%), Positives = 488/596 (81%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGAS 150
           IQPFGCMLAVEE TFRII YSEN   MLDL  +S    E   L IG D RTLFTP S  S
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAAGMLDLAPQSVPTMEKEFLTIGTDVRTLFTPSSAMS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL NPI + S  RS  K FYAI+HRIDVG+VID EP   GD ALS+AGAV
Sbjct: 62  LEKAAAAQEISLTNPISMQS--RSSGKAFYAIVHRIDVGMVIDFEPL--GDAALSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALP GDIG+LCD+VV+DV++LTGYDRVM+Y FH+D+HGEV++E+RR
Sbjct: 118 QSQKLAVRAISRLQALPAGDIGMLCDSVVQDVRELTGYDRVMVYRFHEDEHGEVMAEMRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC + PV V+Q+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFIQNRVRMICDCCSAPVRVLQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLVMAV++N+  + KLWGLVVCHHTSPR +PFP+R ACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSIASLVMAVVVNA--NTKLWGLVVCHHTSPRTVPFPVRCACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A Q  EK IL+TQ LLCDMLLRDAP  IVTQ+PSIMDLV+CDGAAL Y
Sbjct: 296 AFGLQLNMELQLAAQATEKRILKTQTLLCDMLLRDAPIGIVTQTPSIMDLVRCDGAALCY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W +GV P E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGTVWALGVAPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRS TAKE+KWGGAKHHP+ +D+  +MHPRSSFKAFLEVVK RSFPWE +E
Sbjct: 416 ITAKDFLFWFRSQTAKEIKWGGAKHHPDDRDDARRMHPRSSFKAFLEVVKRRSFPWENAE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R  F+++ ++ ++K   +++ N  ++  ++ELSSVA EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGCFEDI-DDTETKTMVHSRLNDLRVHSMEELSSVASEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V+E+S   VE L+  A  G
Sbjct: 535 ILAVDSRGLVNGWNAKIAELTGLPVGEATGKSLVGDLVYEDSMETVERLLRNASRG 590


>gi|218683927|gb|ACL00917.1| phytochrome D [Aethionema oppositifolium]
          Length = 634

 Score =  848 bits (2190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/608 (66%), Positives = 485/608 (79%), Gaps = 16/608 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAV SQKLAV AIS LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVHSQKLAVRAISHLQSLPGGDIKLLCDTVVERVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEVV+E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV V+Q   L Q 
Sbjct: 61  GEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-----------KDSMKLWGLVVCH 370
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN            ++S++LWGLVVCH
Sbjct: 121 ICLVGSTLRAPHGCHAQYMANMGSIASLGMAVIINGNEEDGNSSGGGRNSLRLWGLVVCH 180

Query: 371 HTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSI 430
           HTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  I
Sbjct: 181 HTSARCIPFPLRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGI 240

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           VTQSPSIMDLVKC+GAA  Y GR + +GV P+E+Q+ DI  WLL NH D TGLSTDSL +
Sbjct: 241 VTQSPSIMDLVKCNGAAFLYHGRYYSLGVAPSEAQINDIVEWLLANHSDSTGLSTDSLGD 300

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYP A  LG AVCGMA A IT +DFLFWFRS T KE+KWGGAKHHPE KD+G +MHPRS
Sbjct: 301 AGYPRAPALGDAVCGMAVAFITKRDFLFWFRSQTEKEIKWGGAKHHPEDKDDGQRMHPRS 360

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNT--QQNGSKM- 607
           SFKAFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E  E  DSK    T  Q +G  + 
Sbjct: 361 SFKAFLEVVKSRSQPWEAAEMDAIHSLQLILRDSFKE-SEAMDSKAIAATSVQPHGENLT 419

Query: 608 -QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
            QG++E+ +VA EMVRLIETA  PIF VD  G INGWNAK+AE+TGL   EAMGKSL+ +
Sbjct: 420 EQGMEEIGAVAREMVRLIETAAVPIFAVDIDGCINGWNAKIAEMTGLSVGEAMGKSLVCD 479

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           ++++E + AV+ L+ RAL G+E KNVE+KL+ F    Q   V+++VNAC+S+DY  N+ G
Sbjct: 480 LIYKEYEQAVDMLLSRALKGDEGKNVEVKLKTFGPGLQGKAVFVVVNACSSKDYLKNIVG 539

Query: 727 VCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTG 786
           V FVGQD+T +K++MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TG
Sbjct: 540 VGFVGQDVTSQKIVMDKFINIQGDYKAIINSPNPLIPPIFAADENTCCIEWNTAMEKLTG 599

Query: 787 WMRHEVIG 794
           W R EVIG
Sbjct: 600 WPRSEVIG 607


>gi|363547639|gb|AEW26862.1| phytochrome P [Ceratozamia microstrobila]
          Length = 590

 Score =  848 bits (2190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/596 (69%), Positives = 487/596 (81%), Gaps = 9/596 (1%)

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGAS 150
           IQPFGCMLAVEE TFRII YSEN   MLDL  +S    E   L IG D RTLFTP S  S
Sbjct: 2   IQPFGCMLAVEERTFRIIAYSENAAGMLDLAPQSVPTMEKEFLTIGTDVRTLFTPSSAMS 61

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KAAA++EISL NPI + S  RS  K FYAI+HRIDVG+VID EP   GD ALS+AGAV
Sbjct: 62  LEKAAAAQEISLANPISMQS--RSSGKAFYAIVHRIDVGMVIDFEPL--GDAALSVAGAV 117

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QSQKLAV AISRLQALP GDIG+LCD+VV+DV++LTGYDRVM+Y FH+D+HGEV++E+RR
Sbjct: 118 QSQKLAVRAISRLQALPAGDIGMLCDSVVQDVRELTGYDRVMVYRFHEDEHGEVMAEMRR 177

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
           SDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC + PV V+Q+ EL+QPLCLV STLR
Sbjct: 178 SDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRSAPVRVLQAAELRQPLCLVGSTLR 237

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           +PHGCH QYM NMGSIASLVMAV++N+  + KLWGLVVCHHTSPR +PFP+R ACEFL+Q
Sbjct: 238 APHGCHAQYMANMGSIASLVMAVVVNA--NAKLWGLVVCHHTSPRTVPFPVRCACEFLMQ 295

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A Q  EK IL+TQ LLCDMLLRDAP  IVTQ+PSIMDLV+CDGAAL Y
Sbjct: 296 AFGLQLNMELQLAAQAMEKRILKTQTLLCDMLLRDAPIGIVTQTPSIMDLVRCDGAALCY 355

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
           GG  W +GV P E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA AR
Sbjct: 356 GGTVWALGVAPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAAR 415

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT+KDFLFWFRS TAKE+KWGG KHHP+ +D+G +MHPRSSFKAFLEVVK RSFPWE +E
Sbjct: 416 ITAKDFLFWFRSQTAKEIKWGGEKHHPDDRDDGRRMHPRSSFKAFLEVVKRRSFPWENAE 475

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAP 630
           ++AIHSLQ+++R SF+++ ++ ++K   +++ N  ++  ++ELSSV  EMVRLIETATAP
Sbjct: 476 MDAIHSLQLILRGSFEDI-DDTETKTMVHSRLNDLRVHSMEELSSVVSEMVRLIETATAP 534

Query: 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           I  VDS G +NGWNAK+AELTGLP  EA GKSL+ ++V E+S   VE L+  A  G
Sbjct: 535 ILAVDSRGLVNGWNAKIAELTGLPVGEATGKSLVGDLVCEDSMETVERLLRNASRG 590


>gi|363547732|gb|AEW26908.1| phytochrome P [Encephalartos msinganus]
          Length = 582

 Score =  848 bits (2190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/592 (71%), Positives = 488/592 (82%), Gaps = 15/592 (2%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           LAVEE T+RII YSEN + MLDL  +S     E+F     IG D RTLFTP S   L KA
Sbjct: 1   LAVEERTYRIIAYSENAVGMLDLAPQSVPTMEEEFLT---IGTDVRTLFTPSSALPLEKA 57

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
           AA++EISL+NPI +HS S    KPFYAI+HRIDVG+VID EP   GD A S+AGAVQSQK
Sbjct: 58  AAAQEISLMNPIWMHSKSSG--KPFYAIVHRIDVGMVIDFEPV--GDAATSVAGAVQSQK 113

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LAV AISRLQ+LPGGDIGLLCDTVVEDV++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLE
Sbjct: 114 LAVRAISRLQSLPGGDIGLLCDTVVEDVRELTGYDRVMVYRFHEDEHGEVVAEIRRSDLE 173

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ+ EL+QPLCLV STLR+PHG
Sbjct: 174 PYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAAELRQPLCLVGSTLRAPHG 233

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394
           CH QYM +MGSIASLVMAV+IN   + KLWGLVVCHHTSPR +PFPLRYACE L+QAF L
Sbjct: 234 CHAQYMASMGSIASLVMAVVING--NTKLWGLVVCHHTSPRAVPFPLRYACEILMQAFGL 291

Query: 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRC 454
           QL ME+Q+A QL EK IL+TQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  
Sbjct: 292 QLNMEVQLAAQLTEKRILKTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGLV 351

Query: 455 WLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSK 514
           W +GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP AA LG AVCGMA ARIT+K
Sbjct: 352 WALGVTPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPAAASLGDAVCGMAAARITAK 411

Query: 515 DFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAI 574
           DFLFWFRSHTAKE+KWGGAKH P+ KD+  +MHPRSSFKAFLEVVK RS PWE  E++AI
Sbjct: 412 DFLFWFRSHTAKEIKWGGAKHRPDDKDDDRRMHPRSSFKAFLEVVKRRSLPWENVEMDAI 471

Query: 575 HSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGV 634
           HSLQ+++R SFQ++ +++++K   +++ N  ++Q +DELSSVA EMVRLIETATAPI  V
Sbjct: 472 HSLQLILRGSFQDI-DDSETKTMIHSRLNDLRVQSMDELSSVASEMVRLIETATAPILAV 530

Query: 635 DSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           DS G +NGWNAK+AELTGLP  EAMGKSL+ ++V+EES   VE L+  AL G
Sbjct: 531 DSGGFVNGWNAKLAELTGLPVGEAMGKSLVCDLVYEESMETVERLLHHALRG 582


>gi|406685271|gb|AFS51076.1| phytochrome P, partial [Cephalotaxus fortunei]
          Length = 604

 Score =  847 bits (2189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/608 (69%), Positives = 483/608 (79%), Gaps = 40/608 (6%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS--------------E 127
           AYLS++QRGG IQPFGCMLAVEE +F+II YSEN LEMLD+   S              E
Sbjct: 1   AYLSRMQRGGSIQPFGCMLAVEETSFKIIAYSENALEMLDVMPHSHSHSHSHSHSVPTME 60

Query: 128 DFELNGL--IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHR 185
             E  G+  IG D R LFTP SG +L +AA S+EISL NPI + SNS    KPFYAI+HR
Sbjct: 61  GGESEGIVTIGSDVRRLFTPSSGRNLERAAMSQEISLANPIAMDSNS---GKPFYAIVHR 117

Query: 186 IDVGIVIDLEPSKSGDPALSLA--------GAVQSQKLAVSAISRLQALPGGDIGLLCDT 237
           IDVGIVIDLE  + GD A  ++        G V SQ+LAV A SRLQA+P GDIGLLCDT
Sbjct: 118 IDVGIVIDLELVRRGDAAALVSWGGGGLGGGTVPSQRLAVRATSRLQAVPSGDIGLLCDT 177

Query: 238 VVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQN 297
           VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QN
Sbjct: 178 VVEEVRELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQN 237

Query: 298 RVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS 357
           RVRMICDC A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N 
Sbjct: 238 RVRMICDCRATPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIVNG 297

Query: 358 ------------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQ 405
                       + SMKLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A Q
Sbjct: 298 NGNDEDGVSGSGRSSMKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQ 357

Query: 406 LAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQ 465
           L E NILRTQ LLCDMLLRDAP  IV+QSPSIMDLVKCDGAALYYGG  WL+GVTP E+Q
Sbjct: 358 LTENNILRTQTLLCDMLLRDAPIGIVSQSPSIMDLVKCDGAALYYGGMFWLLGVTPVEAQ 417

Query: 466 LKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTA 525
           +KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTA
Sbjct: 418 IKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTA 477

Query: 526 KEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSF 585
           KE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PW   E++AIHSLQ+++R SF
Sbjct: 478 KEMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWGNVEMDAIHSLQLILRGSF 537

Query: 586 QEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
           +++ +++D+K   + + N  K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNA
Sbjct: 538 EDI-DDSDTKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSTGIVNGWNA 596

Query: 646 KVAELTGL 653
           KV ELTGL
Sbjct: 597 KVGELTGL 604


>gi|406685313|gb|AFS51097.1| phytochrome P, partial [Athrotaxis selaginoides]
          Length = 594

 Score =  847 bits (2189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/598 (69%), Positives = 477/598 (79%), Gaps = 30/598 (5%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSE-----DFELNGL-- 134
           AYLS++QRGG IQPFGCMLAVEE +FRII YSEN  EMLD   +SE     D E+     
Sbjct: 1   AYLSRMQRGGRIQPFGCMLAVEENSFRIIAYSENAAEMLDAAGKSESQSVPDMEIRVAVR 60

Query: 135 IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDL 194
           IG D R LF P S  +L +AA ++EIS+ NPI   S S    KPFYAI+HRIDVGIVIDL
Sbjct: 61  IGSDVRRLFKPWSARNLERAAMTQEISVSNPIAAESKS---GKPFYAIVHRIDVGIVIDL 117

Query: 195 EPSKSGDPALSLAGAVQ---------SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKL 245
           EP +  + A  +A             SQ+LAV AISRLQA+P GDIGLLCD VVE+V++L
Sbjct: 118 EPVRREEAAALVAWGGAEGMAGGAMPSQRLAVRAISRLQAVPNGDIGLLCDAVVEEVREL 177

Query: 246 TGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDC 305
           TGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC
Sbjct: 178 TGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDC 237

Query: 306 HAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS-------- 357
              PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N         
Sbjct: 238 RVSPVSVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIVNGNGNDEEGG 297

Query: 358 --KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQ 415
             + SMKLWGLVVCHHTSPR +PFPLR AC FL+Q F LQ+ MELQ+A QL E NILRTQ
Sbjct: 298 SGRTSMKLWGLVVCHHTSPRAVPFPLRSACGFLMQTFGLQINMELQLAAQLTENNILRTQ 357

Query: 416 VLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLN 475
            LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG+ WL+GVTPTE+Q+KDIA WLL 
Sbjct: 358 TLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGKFWLLGVTPTEAQIKDIADWLLE 417

Query: 476 NHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKH 535
            HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKH
Sbjct: 418 YHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKH 477

Query: 536 HPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK 595
           HP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++D+K
Sbjct: 478 HPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI-DDSDTK 536

Query: 596 VQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGL 653
              + Q N  K+QG+DELSSVA EMVRLIETATAPI  VDS G +NGWNAKVAELTGL
Sbjct: 537 TMVHAQLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSGGIVNGWNAKVAELTGL 594


>gi|406685277|gb|AFS51079.1| phytochrome P, partial [Cephalotaxus sinensis]
          Length = 604

 Score =  847 bits (2188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/608 (69%), Positives = 483/608 (79%), Gaps = 40/608 (6%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS--------------E 127
           AYLS++QRGG IQPFGCMLAVEE +F+II YSEN LEMLD+   S              E
Sbjct: 1   AYLSRMQRGGSIQPFGCMLAVEETSFKIIAYSENALEMLDVMPHSHSHSHSHSHSVPTME 60

Query: 128 DFELNGL--IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHR 185
             E  G+  IG D R LFTP SG +L +AA S+EISL NPI + S+S    KPFYAI+HR
Sbjct: 61  GGESEGIVTIGSDVRRLFTPSSGRNLERAAMSQEISLANPIAMDSSS---GKPFYAIVHR 117

Query: 186 IDVGIVIDLEPSKSGDPALSLA--------GAVQSQKLAVSAISRLQALPGGDIGLLCDT 237
           IDVGIVIDLE  + GD A  ++        G V SQ+LAV A SRLQA+P GDIGLLCDT
Sbjct: 118 IDVGIVIDLELVRRGDAAALVSWGGGGLGGGTVPSQRLAVRATSRLQAVPSGDIGLLCDT 177

Query: 238 VVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQN 297
           VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QN
Sbjct: 178 VVEEVRELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQN 237

Query: 298 RVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS 357
           RVRMICDC A PV VIQ++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N 
Sbjct: 238 RVRMICDCRATPVKVIQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIVNG 297

Query: 358 ------------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQ 405
                       + SMKLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A Q
Sbjct: 298 NGNDEDGVSGSGRSSMKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQ 357

Query: 406 LAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQ 465
           L E NILRTQ LLCDMLLRDAP  IV+QSPSIMDLVKCDGAALYYGG  WL+GVTP E+Q
Sbjct: 358 LTENNILRTQTLLCDMLLRDAPIGIVSQSPSIMDLVKCDGAALYYGGMLWLLGVTPVEAQ 417

Query: 466 LKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTA 525
           +KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTA
Sbjct: 418 IKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTA 477

Query: 526 KEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSF 585
           KE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SF
Sbjct: 478 KEMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSF 537

Query: 586 QEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
           + + +++D+K   + + N  K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNA
Sbjct: 538 EGI-DDSDTKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSTGIVNGWNA 596

Query: 646 KVAELTGL 653
           KV ELTGL
Sbjct: 597 KVGELTGL 604


>gi|218683919|gb|ACL00913.1| phytochrome D [Erysimum capitatum]
          Length = 635

 Score =  845 bits (2182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/608 (65%), Positives = 479/608 (78%), Gaps = 15/608 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PA+S+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVV+ V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PAISIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVDSVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEV++E +R DLEPY+G+H+PA DIPQA RFLFKQNRVRMI DCHA PV V+Q   L Q 
Sbjct: 61  GEVIAESKRDDLEPYIGLHYPATDIPQAPRFLFKQNRVRMIVDCHASPVRVVQDDRLTQA 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVC 369
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN             ++SM+LWGLVVC
Sbjct: 121 ICLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNEEDGNAVNTGGRNSMRLWGLVVC 180

Query: 370 HHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFS 429
           HHTS R IPFPLRYACEFL+QAF LQL MELQ+A Q+AEK +LR Q LLCDMLLRD+P  
Sbjct: 181 HHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAFQVAEKRVLRMQTLLCDMLLRDSPAG 240

Query: 430 IVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLA 489
           IVTQSPSIMDLVKC+GAA  Y G+ + +GV PTE+Q+ DI  WLL NH D TGLSTDSL 
Sbjct: 241 IVTQSPSIMDLVKCNGAAFLYRGKYYSLGVAPTEAQISDIVEWLLANHSDSTGLSTDSLG 300

Query: 490 EAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPR 549
           +AGYP AA LG  VCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +MHPR
Sbjct: 301 DAGYPRAAALGDVVCGMAVAYITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMHPR 360

Query: 550 SSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM- 607
           SSF+AFL VVK+R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M 
Sbjct: 361 SSFQAFLVVVKSRCQPWETAEMDAIHSLQLILRDSFKESEAIDSKAAAAGAVQPHGEDMA 420

Query: 608 -QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
            QG+ E+ +VA EMVRLIETAT PIF VD  G INGWNAK+AELTGL   EAMGKSL+ +
Sbjct: 421 NQGMQEIGAVAREMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVDEAMGKSLVRD 480

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           ++++E +  V+ L+  AL G+E KNVE+KL+ F  + Q   V++ VN C+S+DY NN+ G
Sbjct: 481 LIYKEYEETVDRLLSCALKGDEGKNVEVKLKTFGPELQGKAVFVTVNTCSSKDYLNNIVG 540

Query: 727 VCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTG 786
           VCFVGQD+T  KV+MDKFI +QGDY+AI+ S NPLIPPIFA+DEN  C EWN AME +TG
Sbjct: 541 VCFVGQDVTGHKVVMDKFINIQGDYKAIMHSPNPLIPPIFAADENTHCLEWNTAMENLTG 600

Query: 787 WMRHEVIG 794
           W R EVIG
Sbjct: 601 WPRSEVIG 608


>gi|406685273|gb|AFS51077.1| phytochrome P, partial [Cephalotaxus harringtonia]
          Length = 604

 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/608 (68%), Positives = 483/608 (79%), Gaps = 40/608 (6%)

Query: 82  AYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS--------------E 127
           AYLS++QRGG IQPFGCMLAVEE +F+II YSEN LEMLD+   S              E
Sbjct: 1   AYLSRMQRGGSIQPFGCMLAVEETSFKIIAYSENALEMLDVMPHSHSHSHSHSHSVPTME 60

Query: 128 DFELNGL--IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHR 185
             E  G+  IG D R LFTP SG +L +AA S+EISL NPI + SNS    KPFYAI+HR
Sbjct: 61  GGESEGIVTIGSDVRRLFTPSSGRNLERAAMSQEISLANPIAMDSNS---GKPFYAIVHR 117

Query: 186 IDVGIVIDLEPSKSGDPALSLA--------GAVQSQKLAVSAISRLQALPGGDIGLLCDT 237
           IDVGIVIDLE  + G+ A  ++        G V SQ+LAV A SRLQA+P GDIGLLCDT
Sbjct: 118 IDVGIVIDLELVRRGNAAALVSWGGGGLGGGTVPSQRLAVRATSRLQAVPSGDIGLLCDT 177

Query: 238 VVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQN 297
           VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF Q+
Sbjct: 178 VVEEVRELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQD 237

Query: 298 RVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS 357
           RVRMICDC A PV VIQ++ELKQPLCLV STLR+PHGCH  YM NMGSIASLVMAVI+N 
Sbjct: 238 RVRMICDCRATPVKVIQAEELKQPLCLVGSTLRAPHGCHAXYMANMGSIASLVMAVIVNG 297

Query: 358 ------------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQ 405
                       + SMKLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A Q
Sbjct: 298 NGNGEDGVSGSGRSSMKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQ 357

Query: 406 LAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQ 465
           L E NILRTQ LLCDMLLRDAP  IV+QSPSIMDLVKCDGAALYYGG  WL+GVTP E+Q
Sbjct: 358 LTENNILRTQTLLCDMLLRDAPIGIVSQSPSIMDLVKCDGAALYYGGMFWLLGVTPVEAQ 417

Query: 466 LKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTA 525
           +KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWFRSHTA
Sbjct: 418 IKDIADWLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFRSHTA 477

Query: 526 KEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSF 585
           KE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E++AIHSLQ+++R SF
Sbjct: 478 KEMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEMDAIHSLQLILRGSF 537

Query: 586 QEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
           +++ +++D+K   + + N  K+QG+DELSSVA EMVRLIETATAPI  VDS+G +NGWNA
Sbjct: 538 EDI-DDSDTKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSTGIVNGWNA 596

Query: 646 KVAELTGL 653
           KV ELTGL
Sbjct: 597 KVGELTGL 604


>gi|218683921|gb|ACL00914.1| phytochrome D [Erysimum capitatum]
          Length = 635

 Score =  842 bits (2174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/608 (65%), Positives = 479/608 (78%), Gaps = 15/608 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PA+S+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVVE V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PAISIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEV++E +R DLEPY+G+H+PA DIP A+RFLFKQNRVRMI DCHA PV V+Q   L Q 
Sbjct: 61  GEVIAESKRDDLEPYIGLHYPATDIPHASRFLFKQNRVRMIVDCHASPVRVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVC 369
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN             ++SM+LWGLVVC
Sbjct: 121 ICLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNEEDGNAVNTGGRNSMRLWGLVVC 180

Query: 370 HHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFS 429
           HHTS R IPFPLRYACEFL+QAF LQL MELQ+A Q+AEK +LR Q LLCDMLLRD+P  
Sbjct: 181 HHTSARCIPFPLRYACEFLMQAFGLQLSMELQLAFQVAEKRVLRMQTLLCDMLLRDSPAG 240

Query: 430 IVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLA 489
           IVTQSPSIMDLVKC+GAA  Y G+ + +GV PTE+Q+ DI  WLL NH D TGLSTDSL 
Sbjct: 241 IVTQSPSIMDLVKCNGAAFLYKGKYYSLGVVPTEAQISDIVEWLLANHSDSTGLSTDSLG 300

Query: 490 EAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPR 549
           +AGYP AA LG AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +MHPR
Sbjct: 301 DAGYPRAAALGDAVCGMAVAYITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMHPR 360

Query: 550 SSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKM- 607
           SSF+AFLEVVK+R  PWE +E++AIHSLQ+++RDSF+E E  ++ +   G  Q +G  M 
Sbjct: 361 SSFQAFLEVVKSRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGAVQPHGEDMA 420

Query: 608 -QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDE 666
            QG+ E+ +VA EMVRLIETAT PIF VD  G INGWNAK+ ELT L   EAMGKSL+ +
Sbjct: 421 DQGMQEIGAVAREMVRLIETATVPIFAVDIDGCINGWNAKITELTSLSVDEAMGKSLVCD 480

Query: 667 VVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
           ++++E +  V+ L+  AL G+E KNVE+KL+ F  + Q   V+++VN C+S+DY NN+ G
Sbjct: 481 LIYKEYEVIVDRLLSCALKGDEGKNVEVKLKTFGPELQGKAVFVVVNTCSSKDYLNNIVG 540

Query: 727 VCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTG 786
           V FVGQD+T  KV+MDKFI +QGDY+AI+ S NPLIPPIFA+DEN  C EWN AME +TG
Sbjct: 541 VSFVGQDVTGHKVVMDKFINIQGDYKAIMHSPNPLIPPIFAADENTHCLEWNTAMENLTG 600

Query: 787 WMRHEVIG 794
           W R EVIG
Sbjct: 601 WPRSEVIG 608


>gi|363547649|gb|AEW26867.1| phytochrome P [Ceratozamia sabatoi]
          Length = 582

 Score =  839 bits (2168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/589 (69%), Positives = 484/589 (82%), Gaps = 9/589 (1%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGASLAKAAAS 157
           LAVEE TFRII YSEN   MLDL  +S    E   L IG D RTLFTP S  SL KAAA+
Sbjct: 1   LAVEERTFRIIAYSENAAGMLDLAPQSVPTMEKEFLTIGTDVRTLFTPSSAMSLEKAAAA 60

Query: 158 REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
           +EISL NPI + S  RS  K FYAI+HRIDVG+VID EP   GD ALS+AGAVQSQKLAV
Sbjct: 61  QEISLANPISMQS--RSSGKAFYAIVHRIDVGMVIDFEPL--GDAALSVAGAVQSQKLAV 116

Query: 218 SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
            AISRLQALP GDIG+LCD+VV+DV++LTGYDRVM+Y FH+D+HGEV++E+RRSDLEPYL
Sbjct: 117 RAISRLQALPAGDIGMLCDSVVQDVRELTGYDRVMVYGFHEDEHGEVMAEMRRSDLEPYL 176

Query: 278 GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
           G+H+PA DIPQA+RFLF QNRVRMICDC + PV V+Q+ EL+QPLCLV STLR+PHGCH 
Sbjct: 177 GLHYPATDIPQASRFLFIQNRVRMICDCRSAPVRVLQAAELRQPLCLVGSTLRAPHGCHA 236

Query: 338 QYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLY 397
           QYM NMGSIASLVMAV++N+  + KLWGLVVCHHTSPR +PFP+R ACEFL+QAF LQL 
Sbjct: 237 QYMANMGSIASLVMAVVVNA--NAKLWGLVVCHHTSPRTVPFPVRCACEFLMQAFGLQLN 294

Query: 398 MELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLV 457
           MELQ+A Q  EK IL+TQ LLCDMLLRDAP  IVTQ+PSIMDLV+CDGAAL YGG  W +
Sbjct: 295 MELQLAAQATEKRILKTQTLLCDMLLRDAPIGIVTQTPSIMDLVRCDGAALCYGGTVWAL 354

Query: 458 GVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFL 517
           GV P E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARIT+KDFL
Sbjct: 355 GVAPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAARITAKDFL 414

Query: 518 FWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSL 577
           FWFRS TAKE+KWGGAKHHP+ +D+  +MHPRSSFKAFLEVVK RSFPWE +E++AIHSL
Sbjct: 415 FWFRSQTAKEIKWGGAKHHPDDRDDARRMHPRSSFKAFLEVVKRRSFPWENAEMDAIHSL 474

Query: 578 QIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSS 637
           Q+++R SF+++ ++ ++K   +++ N  ++Q ++ELSSVA EMVRLIETATAPI  VDS 
Sbjct: 475 QLILRGSFEDI-DDTETKTMVHSRLNDLRVQSMEELSSVASEMVRLIETATAPILAVDSR 533

Query: 638 GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           G +NGWNAK+AELTGLP  EA G+SL+ ++V+E+S   VE L+  AL G
Sbjct: 534 GLVNGWNAKIAELTGLPVGEATGRSLVGDLVYEDSMETVERLLRNALRG 582


>gi|218683905|gb|ACL00907.1| phytochrome D [Boechera laevigata]
          Length = 630

 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/607 (65%), Positives = 477/607 (78%), Gaps = 18/607 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVVE V+ LTGY RVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRDLTGYHRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEV++E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV V+Q   L Q 
Sbjct: 61  GEVIAESKRYDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVC 369
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN             ++SM+LWGLVVC
Sbjct: 121 ICLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNEEDGNCVNTGGRNSMRLWGLVVC 180

Query: 370 HHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFS 429
           HH S R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  
Sbjct: 181 HHKSARCIPFPLRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAG 240

Query: 430 IVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLA 489
           IVTQ PSIMDLVKC+GAA  Y G+ + +GV PTE+Q+ DI  WLL NH D TGLSTDSL 
Sbjct: 241 IVTQRPSIMDLVKCNGAAFLYQGKYYPLGVAPTEAQINDIVMWLLANHSDSTGLSTDSLG 300

Query: 490 EAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPR 549
           + GYPGAA LG AVCGMA A IT +DFLFW+RSHT KE+KWGGAKHHPE KD+G +MHPR
Sbjct: 301 DVGYPGAAALGDAVCGMAVAYITKRDFLFWYRSHTEKEIKWGGAKHHPEDKDDGQRMHPR 360

Query: 550 SSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM-- 607
           SSF+AFLEVVK+R  PWE +E++AIHSLQ+++RDSF+E E    +   G  Q +G  +  
Sbjct: 361 SSFQAFLEVVKSRCQPWETAEMDAIHSLQLILRDSFKESE----AAAAGAVQTHGEDIAE 416

Query: 608 QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
           QG+ E+ +VA EMVRLIETA  PIF VD  G INGWNAK+AELT L    AMGKSL+ ++
Sbjct: 417 QGMQEIGAVAREMVRLIETAAVPIFAVDIDGCINGWNAKIAELTCLSVEGAMGKSLVRDL 476

Query: 668 VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGV 727
           +++E +  V+ L+  AL G+E KNVE+KL+ F  + Q   V++++NAC+S+DY NN+ GV
Sbjct: 477 IYKEYEETVDRLLSCALKGDEGKNVEVKLKSFGPELQGKAVFVVINACSSKDYLNNIVGV 536

Query: 728 CFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGW 787
           CF+GQD+T  K++MDKFI +Q DY+A I S NPLIPPIFA+DEN CC EWN AMEK+TGW
Sbjct: 537 CFIGQDVTGYKIVMDKFINIQSDYKATIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGW 596

Query: 788 MRHEVIG 794
            R EVIG
Sbjct: 597 PRSEVIG 603


>gi|363547641|gb|AEW26863.1| phytochrome P [Ceratozamia miqueliana]
          Length = 582

 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/589 (69%), Positives = 483/589 (82%), Gaps = 9/589 (1%)

Query: 100 LAVEEPTFRIIGYSENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGASLAKAAAS 157
           LAVEE TFRII YSEN   MLDL  +S    E   L IG D RTL TP S   L KAAA+
Sbjct: 1   LAVEERTFRIIAYSENAAGMLDLAPQSVPTMEKEFLTIGTDVRTLLTPSSAMPLEKAAAA 60

Query: 158 REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAV 217
           +EISL NPI + S  RS  K FYAI+HRIDVG+VID EP   GD ALS+AGAVQSQKLAV
Sbjct: 61  QEISLANPISMQS--RSSGKAFYAIVHRIDVGMVIDFEPL--GDAALSVAGAVQSQKLAV 116

Query: 218 SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
            AISRLQALP GDIG+LCD+VV+DV++LTGYDRVM+Y FH+D+HGEV++E+RRSDLEPYL
Sbjct: 117 RAISRLQALPAGDIGMLCDSVVQDVRELTGYDRVMVYRFHEDEHGEVMAEMRRSDLEPYL 176

Query: 278 GIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHL 337
           G+H+PA DIPQA+RFLF QNRVRMICDC + PV V+Q+ EL+QPLCLV STLR+PHGCH 
Sbjct: 177 GLHYPATDIPQASRFLFMQNRVRMICDCRSAPVRVLQAAELRQPLCLVGSTLRAPHGCHA 236

Query: 338 QYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLY 397
           QYM NMGSIASLVMAV++N+  + KLWGLVVCHHTSPR +PFP+R ACEFL+QAF LQL 
Sbjct: 237 QYMANMGSIASLVMAVVVNA--NTKLWGLVVCHHTSPRAVPFPVRCACEFLMQAFGLQLN 294

Query: 398 MELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLV 457
           MELQ+A Q  EK IL+TQ LLCDMLLRDAP  IVTQ+PSIMDLV+CDGAAL YGG  W +
Sbjct: 295 MELQLAAQATEKRILKTQTLLCDMLLRDAPIGIVTQTPSIMDLVRCDGAALCYGGTVWAL 354

Query: 458 GVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFL 517
           GV P E+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARIT+KDFL
Sbjct: 355 GVAPAEAQIKDIADWLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAARITAKDFL 414

Query: 518 FWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSL 577
           FWFRS TAKE+KWGGAKHHP+ +D+G +MHPRSSFKAFLEVVK RSFPWE +E++AIHSL
Sbjct: 415 FWFRSQTAKEIKWGGAKHHPDDRDDGRRMHPRSSFKAFLEVVKRRSFPWENAEMDAIHSL 474

Query: 578 QIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSS 637
           Q+++R SF+++++  ++K   +++ N  ++Q ++ELSSVA EMVRLIETATAPI  VDS 
Sbjct: 475 QLILRGSFEDIDDA-ETKTMVHSRLNDLRVQSMEELSSVASEMVRLIETATAPILAVDSR 533

Query: 638 GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           G +NGWNAK+AELTGLP  EA GKSL+ ++V+E+S   VE L+  AL G
Sbjct: 534 GLVNGWNAKIAELTGLPVGEATGKSLVGDLVYEDSMETVERLLRNALRG 582


>gi|218683935|gb|ACL00921.1| phytochrome D [Malcolmia africana]
          Length = 633

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/608 (65%), Positives = 481/608 (79%), Gaps = 17/608 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVV+ V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVDSVRGLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEV++E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRM+ DC A PV V+Q   L Q 
Sbjct: 61  GEVIAESKREDLEPYIGLHYPATDIPQASRFLFKQNRVRMVVDCSASPVRVVQDDRLAQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN-----------SKDSMKLWGLVVCH 370
           +CLV STLR+PHGCH QYM NMG+ ASL MAVIIN            ++SM+LWGLVVCH
Sbjct: 121 ICLVGSTLRAPHGCHAQYMANMGTTASLAMAVIINXNEXDGSXGAXGRNSMRLWGLVVCH 180

Query: 371 HTSP-RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFS 429
           HTS  R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  
Sbjct: 181 HTSASRCIPFPLRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAG 240

Query: 430 IVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLA 489
           IVTQSPSIMDLVKC+GAA  Y G+ + +GV P+E+Q+ +I  WLL  H D TGLSTDSL+
Sbjct: 241 IVTQSPSIMDLVKCNGAAFLYQGKYYSLGVAPSEAQIHEIVEWLLAKHSDSTGLSTDSLS 300

Query: 490 EAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPR 549
           +AGYP AA LG AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +MHPR
Sbjct: 301 DAGYPEAAALGDAVCGMAVAYITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMHPR 360

Query: 550 SSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM-- 607
           SSFKAFLEVVK+R  PWE +E++AIHSLQ+++RDSF+E      + V    Q +G  M  
Sbjct: 361 SSFKAFLEVVKSRCQPWETAEMDAIHSLQLILRDSFKEAAAAAAAGVA--IQPHGEDMTE 418

Query: 608 QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
           QG+DE+ +VA EMVRLIETAT PIF VD  G INGWNAK+AELT L   EAMGKSL+ ++
Sbjct: 419 QGMDEVGAVAREMVRLIETATVPIFAVDIDGCINGWNAKIAELTCLSVEEAMGKSLVRDL 478

Query: 668 VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQ-HSVVYILVNACTSRDYKNNVKG 726
           +++E +  V+ L+  AL GEE KNVE+KL+ F    Q    V+++VNAC+S+DY NN+ G
Sbjct: 479 IYKEYEETVDKLLSNALKGEEGKNVEVKLKTFGAMVQGKEAVFVVVNACSSKDYLNNIIG 538

Query: 727 VCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTG 786
           VCFVG+D+T EK +MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TG
Sbjct: 539 VCFVGKDVTSEKFVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTG 598

Query: 787 WMRHEVIG 794
           W R EVIG
Sbjct: 599 WPRSEVIG 606


>gi|218683933|gb|ACL00920.1| phytochrome D [Malcolmia africana]
          Length = 630

 Score =  837 bits (2161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/605 (65%), Positives = 482/605 (79%), Gaps = 14/605 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVV+ V+ LTGYDRVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVDSVRDLTGYDRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEV++E +R DLEPY+G+H+PA DI QA+RFLFKQNRVRMI DC A PV V+Q   L Q 
Sbjct: 61  GEVIAESKREDLEPYIGLHYPATDILQASRFLFKQNRVRMIVDCSASPVRVVQDDRLAQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS--------KDSMKLWGLVVCHHTS 373
           +CLV STLR+PHGCH QYM NMG++ASL MAVIIN+        ++SM+LWGLVVCHHTS
Sbjct: 121 ICLVGSTLRAPHGCHAQYMANMGTVASLAMAVIINANEEDGTGGRNSMRLWGLVVCHHTS 180

Query: 374 P-RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVT 432
             R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  IVT
Sbjct: 181 ASRCIPFPLRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAGIVT 240

Query: 433 QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
           QSPSIMDLVKC+GAA  Y G+ + +GV P+E+Q+ +I  WLL  H D TGLSTDSL++AG
Sbjct: 241 QSPSIMDLVKCNGAAFLYQGKYYSLGVAPSEAQIHEIVEWLLAKHSDSTGLSTDSLSDAG 300

Query: 493 YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
           YP AA LG AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +MHPRSSF
Sbjct: 301 YPKAAALGDAVCGMAVAYITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMHPRSSF 360

Query: 553 KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM--QGV 610
           KAFLEVVK+R  PWE +E++AIHSLQ+++RDSF+E      + V    Q +G  M  +G+
Sbjct: 361 KAFLEVVKSRCQPWETAEMDAIHSLQLILRDSFKEAAAAAAAGVA--IQPHGEDMTEKGM 418

Query: 611 DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
           DE+ +VA EMVRLIETAT PIF VD  G INGWNAK+AELT L   EAMGKSL+ +++++
Sbjct: 419 DEIGAVAREMVRLIETATVPIFAVDIDGCINGWNAKIAELTCLSVEEAMGKSLVRDLIYK 478

Query: 671 ESQGAVENLICRALLGEEDKNVELKLRKFELQKQ-HSVVYILVNACTSRDYKNNVKGVCF 729
           E +  V+ L+  AL GEE KNVE+KL+ F    Q    V+++VNAC+S+DY NN+ GVCF
Sbjct: 479 EYEETVDKLLSNALKGEEGKNVEVKLKTFGAMVQGKEAVFVVVNACSSKDYLNNIVGVCF 538

Query: 730 VGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMR 789
           VG+D+T EK +MDKFI +QGDY+AII S NPLIPPIFA+DEN CC EWN AMEK+TGW R
Sbjct: 539 VGKDVTSEKFVMDKFINIQGDYKAIIHSPNPLIPPIFAADENTCCLEWNTAMEKLTGWPR 598

Query: 790 HEVIG 794
            EVIG
Sbjct: 599 SEVIG 603


>gi|218683907|gb|ACL00908.1| phytochrome D [Boechera laevigata]
          Length = 630

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/607 (64%), Positives = 475/607 (78%), Gaps = 18/607 (2%)

Query: 202 PALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH 261
           PALS+AGAVQSQKLAV AIS LQ+LPGGDI LLCDTVVE  + LTGY RVM+Y FH+D+H
Sbjct: 1   PALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESXRDLTGYHRVMVYKFHEDEH 60

Query: 262 GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQP 321
           GEV++E +R DLEPY+G+H+PA DIPQA+RFLFKQNRVRMI DCHA PV V+Q   L Q 
Sbjct: 61  GEVIAESKRYDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHASPVRVVQDDRLTQS 120

Query: 322 LCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS------------KDSMKLWGLVVC 369
           +CLV STLR+PHGCH QYM NMGSIASL MAVIIN             ++SM+LWGLVVC
Sbjct: 121 ICLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNEEDGNCVNTGGRNSMRLWGLVVC 180

Query: 370 HHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFS 429
           HH S R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK +LR Q LLCDMLLRD+P  
Sbjct: 181 HHKSARCIPFPLRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCDMLLRDSPAG 240

Query: 430 IVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLA 489
           IVTQ PSIMDLVKC+GAA  Y G+ + +GV PTE+Q+ DI  WLL NH D TGLST SL 
Sbjct: 241 IVTQRPSIMDLVKCNGAAFLYQGKYYPLGVAPTEAQINDIVMWLLANHSDSTGLSTGSLG 300

Query: 490 EAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPR 549
           + GYPGAA LG AVCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +MHPR
Sbjct: 301 DVGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMHPR 360

Query: 550 SSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM-- 607
           SSF+AFLEVVK+R  PWE +E++AI SLQ+++RDSF+E E    +   G  Q +G  +  
Sbjct: 361 SSFQAFLEVVKSRCQPWETAEMDAILSLQLILRDSFKESE----AAAAGAVQTHGEDIAE 416

Query: 608 QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEV 667
           QG+ E+ +VA EMVRLIETA  PIF VD  G INGWNAK+AELT L   EAMGKSL+ ++
Sbjct: 417 QGMQEIGAVAREMVRLIETAAVPIFAVDIDGCINGWNAKIAELTCLSVEEAMGKSLVRDL 476

Query: 668 VHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGV 727
           +++E +  V+ L+  AL G+E KNVE+KL+ F  + Q   V +++NAC+S+DY NN+ GV
Sbjct: 477 IYKEYEETVDRLLSCALKGDEGKNVEVKLKSFGPELQGKAVLVVINACSSKDYLNNIVGV 536

Query: 728 CFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGW 787
           CF+GQD+T  K++MDKFI +Q DY+AII S NPLIPPIFA+DEN CC EWN A+EK+TGW
Sbjct: 537 CFIGQDVTGHKIVMDKFINVQSDYKAIIHSPNPLIPPIFAADENTCCLEWNTAIEKLTGW 596

Query: 788 MRHEVIG 794
            R EVIG
Sbjct: 597 PRSEVIG 603


>gi|327241180|gb|AEA40434.1| phytochrome A type 2 [Triticum aestivum]
          Length = 889

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/863 (48%), Positives = 558/863 (64%), Gaps = 69/863 (7%)

Query: 38  IIDHYNADAGLLAEFEQSVASGKSFNYSRSVIS---PPEGVPE---EQITAYLSKIQRGG 91
           ++     DA L AEFE+S     SF+YS+ V +    P  + E   E++ AYL  IQRG 
Sbjct: 22  VLAQTTLDAQLNAEFEES---SDSFDYSKLVEAQRDTPTVLQEGRSEKVIAYLQHIQRGK 78

Query: 92  LIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPP 146
           +IQ FGC+LA++E +F +I +SEN  EML   S +     +   L+  IG + R+LFT  
Sbjct: 79  MIQSFGCLLALDEKSFNVIAFSENAPEMLTTVSHAVPSVNDPPRLD--IGTNVRSLFTDQ 136

Query: 147 SGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSL 206
              +L KA    ++SLLNPILV   +    KPFYAI+HR    + +D EP    +   S 
Sbjct: 137 GATALHKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLAVDFEPVNPTEFPASA 194

Query: 207 AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
           AGA+QS KLA  AIS++QALPGG I LLC+TVV++V +LTGYDRVM Y FH+D+HGEV +
Sbjct: 195 AGALQSYKLAAKAISKIQALPGGSIELLCNTVVKEVFELTGYDRVMAYKFHEDNHGEVFA 254

Query: 267 EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
           EI +  LEPYLG+H+PA DIPQAARFLF +N+VRMICD  +  + VI+ + L   + L  
Sbjct: 255 EITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDVRSRSIKVIEDEALPFDISLCG 314

Query: 327 STLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMK---------------LWGLVVCHH 371
           S LR+ H CHLQYM NM SIASLVMAV++N  +                  LWGLVVCHH
Sbjct: 315 SALRAAHSCHLQYMENMNSIASLVMAVVVNENEEDDEVGSEQPAQQQKKKILWGLVVCHH 374

Query: 372 TSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSI 430
            SPRY PFPLRYACEFL Q F++ +  E +V  QL EK+ILRTQ +L DML ++A P +I
Sbjct: 375 ESPRYAPFPLRYACEFLAQVFAVHVNKEFEVQKQLREKSILRTQTILSDMLFKEASPLTI 434

Query: 431 VTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAE 490
           V+ +P+IMDL+KCDGAAL YG + W +G  PTESQ++D+A WL   H D TGLST+SL +
Sbjct: 435 VSGAPNIMDLIKCDGAALLYGDKVWRLGNAPTESQIRDLALWLSEVHMDSTGLSTESLHD 494

Query: 491 AGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRS 550
           AGYPGA+ LG +VCGMA A+I S D LFWFRSHTA+E++WGGAK+ P  +D+  +MHPR 
Sbjct: 495 AGYPGASALGDSVCGMAVAKINSSDILFWFRSHTAQEIRWGGAKNDPSDQDDSRRMHPRL 554

Query: 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGV 610
           SFKAFLEVVK +S  W  SE++AIHSLQ+++R +   + +    K   + Q    K+ G+
Sbjct: 555 SFKAFLEVVKMKSLAWTDSEMDAIHSLQLILRGTVDGVVKPT-GKASLDEQIGDLKLDGL 613

Query: 611 DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670
            EL +V  EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V E
Sbjct: 614 AELQAVTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEE 672

Query: 671 ESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFV 730
            S   V+ ++  AL G+E+K V  +++    ++    V ++VNAC SRD  ++V GVCFV
Sbjct: 673 SSVSVVQRMLYLALQGKEEKEVRFEVKTHGPKRDDGPVILVVNACASRDLHDDVVGVCFV 732

Query: 731 GQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH 790
            QD+T  K++MDKF R++GDY AII + NPLIPPIF +DE   C EWNAAM K+TGW R 
Sbjct: 733 AQDVTVHKLVMDKFTRVEGDYMAIIHNPNPLIPPIFGADEFGWCCEWNAAMTKLTGWHRE 792

Query: 791 EVI---------------------------------GITGQGTENFPFGFFNRQGQFVEV 817
           EV+                                  + G+ TE  PFGFF+R G++ + 
Sbjct: 793 EVLNKMLLGEVFDSSNASCLLKNKDAFVSLCVVINSALAGEETEKAPFGFFDRSGKYTDC 852

Query: 818 ALTASRRTDAEGKVIGCFCFMQI 840
            L+ +RR +  G + G FCF+ I
Sbjct: 853 LLSVNRRENEGGLITGVFCFIHI 875


>gi|363547631|gb|AEW26858.1| phytochrome P [Ceratozamia fuscoviridis]
          Length = 568

 Score =  815 bits (2104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/575 (68%), Positives = 471/575 (81%), Gaps = 9/575 (1%)

Query: 114 ENCLEMLDLRSRS-EDFELNGL-IGIDARTLFTPPSGASLAKAAASREISLLNPILVHSN 171
           EN   MLDL  +S    E   L IG D RTLFTP S  SL KAAA++EISL NPI + S 
Sbjct: 1   ENAAGMLDLAPQSVPTMEKEFLTIGTDVRTLFTPSSAMSLEKAAAAQEISLANPISMQS- 59

Query: 172 SRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDI 231
            RS  K FYAI+HRIDVG+VID EP   GD ALS+AGAVQSQKLAV AISRLQALP GDI
Sbjct: 60  -RSSGKAFYAIVHRIDVGMVIDFEPL--GDAALSVAGAVQSQKLAVRAISRLQALPAGDI 116

Query: 232 GLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAAR 291
           G+LCD+VV+DV++LTGYDRVM+Y FH+D+HGEV++E+RRSDLEPYLG+H+PA DIPQA+R
Sbjct: 117 GMLCDSVVQDVRELTGYDRVMVYRFHEDEHGEVMAEMRRSDLEPYLGLHYPATDIPQASR 176

Query: 292 FLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVM 351
           FLF QNRVRMICDC + PV V+Q+ EL+QPLCLV STLR+PHGCH QYM NMGSIASLVM
Sbjct: 177 FLFIQNRVRMICDCRSAPVRVLQAAELRQPLCLVGSTLRAPHGCHAQYMANMGSIASLVM 236

Query: 352 AVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNI 411
           AV++N+  + KLWGLVVCHHTSPR +PFP+R ACEFL+QAF LQL MELQ+A Q  EK I
Sbjct: 237 AVVVNA--NTKLWGLVVCHHTSPRTVPFPVRCACEFLMQAFGLQLNMELQLAAQATEKRI 294

Query: 412 LRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAW 471
           L+TQ LLCDMLLRDAP  IVTQ+PSIMDLV+CDGAAL YGG  W +GV P E+Q+KDIA 
Sbjct: 295 LKTQTLLCDMLLRDAPIGIVTQTPSIMDLVRCDGAALCYGGTVWALGVAPAEAQIKDIAD 354

Query: 472 WLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWG 531
           WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARIT+KDFLFWFRS TAKE+KWG
Sbjct: 355 WLLECHGDWTGLSTDSLADAGYPGAASLGDAVCGMAAARITAKDFLFWFRSQTAKEIKWG 414

Query: 532 GAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEE 591
           G KHHP+ +D+G +MHPRSSFKAFLEVVK RSFPWE +E++AIHSLQ+++R SF+++ ++
Sbjct: 415 GEKHHPDDRDDGRRMHPRSSFKAFLEVVKRRSFPWENAEMDAIHSLQLILRGSFEDI-DD 473

Query: 592 NDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELT 651
            ++K   +++ N  ++Q ++ELSSVA EMVRLIETATAPI  VDS G +NGWNAK+AELT
Sbjct: 474 TETKTMVHSRLNDLRVQSMEELSSVASEMVRLIETATAPILAVDSRGLVNGWNAKIAELT 533

Query: 652 GLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
           GLP  EA GKSL+ ++V+E+S   VE L+  A  G
Sbjct: 534 GLPVGEATGKSLVGDLVYEDSMETVERLLRNASRG 568


>gi|218683943|gb|ACL00925.1| phytochrome D [Thlaspi perfoliatum]
          Length = 616

 Score =  814 bits (2103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/592 (64%), Positives = 468/592 (79%), Gaps = 16/592 (2%)

Query: 216 AVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP 275
           AV AIS LQ+LP GDI LLCDTVVE V+ LTGYDRVM+  FH+D+HGEV++E +R DLEP
Sbjct: 1   AVRAISHLQSLPRGDIKLLCDTVVESVRDLTGYDRVMVDKFHEDEHGEVIAESKRDDLEP 60

Query: 276 YLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGC 335
           Y+G+H+PA DIPQA+RFLFKQ+RVRMI DCHA PV V+Q   L Q +CLV STLR+PHGC
Sbjct: 61  YIGLHYPATDIPQASRFLFKQSRVRMIVDCHASPVRVVQEDRLTQSICLVGSTLRAPHGC 120

Query: 336 HLQYMTNMGSIASLVMAVIINSKD-------------SMKLWGLVVCHHTSPRYIPFPLR 382
           H QYM NMGSIASL MAVIIN  +             SM+LWGLVVCHHTS R IPFPLR
Sbjct: 121 HAQYMANMGSIASLGMAVIINGNEEDGNGVNNGGGRNSMRLWGLVVCHHTSARCIPFPLR 180

Query: 383 YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
           YACEFL+QAF LQL MELQ+A+Q+AEK +LR Q LLCDMLLRD+P  IVTQSPSIMDLVK
Sbjct: 181 YACEFLMQAFGLQLNMELQLALQVAEKRVLRMQTLLCDMLLRDSPAGIVTQSPSIMDLVK 240

Query: 443 CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
           C+G A  Y G+ + +GV P+E+Q+ DI  WLL NH D TGL TDSL +AGYP A++LG  
Sbjct: 241 CNGEAFLYQGKYYSLGVAPSEAQINDIVEWLLANHSDSTGLRTDSLGDAGYPRASVLGDD 300

Query: 503 VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
           VCGMA A IT +DFLFWFRSHT KE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+R
Sbjct: 301 VCGMAVAYITKRDFLFWFRSHTEKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSR 360

Query: 563 SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVR 622
           S PWE +E++A HSLQ+++RDSF+E  E  DS V    ++     QG++E+ +VA EMVR
Sbjct: 361 SQPWEAAEMDATHSLQLILRDSFKE-SEARDSIVAA--ERENMTEQGMEEIGAVAREMVR 417

Query: 623 LIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICR 682
           LIETA  PIF VD  G INGWNAK+AE+TGL   EAMGKS++ ++++ E + AV+ L+ R
Sbjct: 418 LIETAKVPIFAVDMDGCINGWNAKIAEMTGLSVEEAMGKSVVRDLIYRECEEAVDMLLSR 477

Query: 683 ALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742
           AL G+E KNVE+KL+ F  + Q   V+++VNAC+S+D+ +N+ GVCFVGQD+T +K++MD
Sbjct: 478 ALKGDEGKNVEVKLKTFGPELQGKAVFVVVNACSSKDHLSNIVGVCFVGQDVTSQKIVMD 537

Query: 743 KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG 794
           KFI +QGDY+AII + NPLIPPIFA+DEN CC+EWN AMEK+TGW R +VIG
Sbjct: 538 KFINIQGDYKAIIHTPNPLIPPIFAADENTCCTEWNTAMEKLTGWSRGQVIG 589


>gi|406685295|gb|AFS51088.1| phytochrome P, partial [Taxus sumatrana]
          Length = 543

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/534 (72%), Positives = 445/534 (83%), Gaps = 15/534 (2%)

Query: 207 AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
            G+V SQ+LAV A SRLQA+P GDIGLLCDTVVE+V++LTGYDRVM+Y FH+D+HGEVV+
Sbjct: 11  GGSVPSQRLAVRATSRLQAVPSGDIGLLCDTVVEEVRELTGYDRVMVYKFHEDEHGEVVA 70

Query: 267 EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
           EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS ELKQPLCLV 
Sbjct: 71  EIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQSGELKQPLCLVG 130

Query: 327 STLRSPHGCHLQYMTNMGSIASLVMAVIINS--------------KDSMKLWGLVVCHHT 372
           STLR+PHGCH QYM NMGSIASLVMAVI+N               + SMKLWGLVVCHHT
Sbjct: 131 STLRAPHGCHAQYMANMGSIASLVMAVIVNGNGNGNDEDGGGGSGRSSMKLWGLVVCHHT 190

Query: 373 SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVT 432
           SPR +PFPLR ACEFL+Q F LQ+ MELQ+A+QL E NILRTQ LLCDMLLRDAP  IVT
Sbjct: 191 SPRAVPFPLRSACEFLMQTFGLQINMELQLAVQLIENNILRTQTLLCDMLLRDAPIGIVT 250

Query: 433 QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
           QSPSIMDLVKCDGAALYYGG CWL+GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+ G
Sbjct: 251 QSPSIMDLVKCDGAALYYGGMCWLLGVTPMEAQIKDIAEWLLECHGDSTGLSTDSLADTG 310

Query: 493 YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
           YPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSF
Sbjct: 311 YPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSF 370

Query: 553 KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612
           KAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+QG+DE
Sbjct: 371 KAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI-DDSDTKTMVHARLNDLKLQGIDE 429

Query: 613 LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
           LSSVA EMVRLIETATAPI  VDSSG +NGWNAKV ELTGLP  EAMGKSL+ ++V +ES
Sbjct: 430 LSSVASEMVRLIETATAPILAVDSSGIVNGWNAKVGELTGLPVGEAMGKSLVHDLVFDES 489

Query: 673 QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
              VE ++  A+ GEE+KNVE+KLR F  QKQ  V+Y++VNAC+SRDY +N+ G
Sbjct: 490 VETVEKMLYHAMRGEEEKNVEIKLRTFGPQKQKKVIYLVVNACSSRDYTDNIVG 543


>gi|406685297|gb|AFS51089.1| phytochrome P, partial [Taxus wallichiana]
          Length = 543

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/534 (72%), Positives = 445/534 (83%), Gaps = 15/534 (2%)

Query: 207 AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
            G+V SQ+LAV A SRLQA+P GDIGLLCDTVVE+V++LTGYDRVM+Y FH+D+HGEVV+
Sbjct: 11  GGSVPSQRLAVRATSRLQAVPSGDIGLLCDTVVEEVRELTGYDRVMVYKFHEDEHGEVVA 70

Query: 267 EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
           EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS ELKQPLCLV 
Sbjct: 71  EIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQSGELKQPLCLVG 130

Query: 327 STLRSPHGCHLQYMTNMGSIASLVMAVIINS--------------KDSMKLWGLVVCHHT 372
           STLR+PHGCH QYM NMGSIASLVMAVI+N               + SMKLWGLVVCHHT
Sbjct: 131 STLRAPHGCHAQYMANMGSIASLVMAVIVNGNGNGNDEDGGGGSGRSSMKLWGLVVCHHT 190

Query: 373 SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVT 432
           SPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL E NILRTQ LLCDMLLRDAP  IVT
Sbjct: 191 SPRAVPFPLRSACEFLMQTFGLQINMELQLAAQLIENNILRTQTLLCDMLLRDAPIGIVT 250

Query: 433 QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
           QSPSIMDLVKCDGAALYYGG CWL+GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AG
Sbjct: 251 QSPSIMDLVKCDGAALYYGGMCWLLGVTPMEAQIKDIAEWLLECHGDSTGLSTDSLADAG 310

Query: 493 YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
           YPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSF
Sbjct: 311 YPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSF 370

Query: 553 KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612
           KAFLEVVK RS PWE  E++AIHSL++++R SFQ++ +++D+K   + + N  K+QG+DE
Sbjct: 371 KAFLEVVKRRSLPWENVEMDAIHSLRLILRGSFQDI-DDSDTKTMVHARLNDLKLQGIDE 429

Query: 613 LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
           LSSVA EMVRLIETATAPI  VDSSG +NGWNAKV ELTGLP  EAMGKSL+ ++V +ES
Sbjct: 430 LSSVASEMVRLIETATAPILAVDSSGIVNGWNAKVGELTGLPVGEAMGKSLVHDLVFDES 489

Query: 673 QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
              VE ++  A+ GEE+KNVE+KLR F  QKQ  V+Y++VNAC+SRDY +N+ G
Sbjct: 490 VETVEKMLYHAMRGEEEKNVEIKLRTFGPQKQKKVIYLVVNACSSRDYTDNIVG 543


>gi|406685285|gb|AFS51083.1| phytochrome P, partial [Taxus wallichiana var. chinensis]
          Length = 543

 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/534 (72%), Positives = 445/534 (83%), Gaps = 15/534 (2%)

Query: 207 AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
            G+V SQ+LAV A SRLQA+P GDIGLLCDTVVE+V++LTGYDRVM+Y FH+D+HGEVV+
Sbjct: 11  GGSVPSQRLAVRATSRLQAVPSGDIGLLCDTVVEEVRELTGYDRVMVYKFHEDEHGEVVA 70

Query: 267 EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
           EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS ELKQPLCLV 
Sbjct: 71  EIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQSGELKQPLCLVG 130

Query: 327 STLRSPHGCHLQYMTNMGSIASLVMAVIINS--------------KDSMKLWGLVVCHHT 372
           STLR+PHGCH QYM NMGSIASLVMAVI+N               + SMKLWGLVVCHHT
Sbjct: 131 STLRAPHGCHAQYMANMGSIASLVMAVIVNGNGNGNDEDGGGGSGRSSMKLWGLVVCHHT 190

Query: 373 SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVT 432
           SPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL E NILRTQ LLCDMLLRDAP  IVT
Sbjct: 191 SPRAVPFPLRSACEFLMQTFGLQINMELQLAAQLIENNILRTQTLLCDMLLRDAPIGIVT 250

Query: 433 QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
           QSPSIMDLVKCDGAALYYGG CWL+GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AG
Sbjct: 251 QSPSIMDLVKCDGAALYYGGMCWLLGVTPMEAQIKDIAEWLLECHGDSTGLSTDSLADAG 310

Query: 493 YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
           YPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSF
Sbjct: 311 YPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSF 370

Query: 553 KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612
           KAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+QG+DE
Sbjct: 371 KAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI-DDSDTKTMVHARLNDLKLQGIDE 429

Query: 613 LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
           LSSVA EMVRLIETATAPI  VDSSG +NGWNAKV ELTGLP  EAMGKSL+ ++V +ES
Sbjct: 430 LSSVASEMVRLIETATAPILAVDSSGIVNGWNAKVGELTGLPVGEAMGKSLVHDLVFDES 489

Query: 673 QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
              VE ++  A+ GEE+KNVE+KLR F  QKQ  V+Y++VNAC+SRDY +++ G
Sbjct: 490 VETVEKMLYHAMRGEEEKNVEIKLRTFGPQKQKKVIYLVVNACSSRDYTDSIVG 543


>gi|406685279|gb|AFS51080.1| phytochrome P, partial [Pseudotaxus chienii]
          Length = 548

 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/534 (71%), Positives = 442/534 (82%), Gaps = 17/534 (3%)

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           +V SQ+LAV A SRLQ +P GDIGLLCDTVVE+V++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 16  SVPSQRLAVRATSRLQEVPSGDIGLLCDTVVEEVRELTGYDRVMVYKFHEDEHGEVVAEI 75

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ++ELKQPLCLV ST
Sbjct: 76  RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAEELKQPLCLVGST 135

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINS----------------KDSMKLWGLVVCHHT 372
           LR+PHGCH QYM NMGSIASLVMAVI+N                 + SMKLWGLVVCHHT
Sbjct: 136 LRAPHGCHAQYMANMGSIASLVMAVIVNGIGNGNDEDGGGGSGSGRSSMKLWGLVVCHHT 195

Query: 373 SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVT 432
           SPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL E NILRTQ LLCDMLLRDAP  IVT
Sbjct: 196 SPRAVPFPLRSACEFLMQTFGLQINMELQLAAQLIENNILRTQTLLCDMLLRDAPIGIVT 255

Query: 433 QSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAG 492
           QSPSIM+LVKCDGAALYYGG CWL+GVTP E+Q+KDI  WLL  HGD TGLSTDSLA+AG
Sbjct: 256 QSPSIMNLVKCDGAALYYGGMCWLLGVTPMEAQIKDITEWLLECHGDSTGLSTDSLADAG 315

Query: 493 YPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSF 552
           YPGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSF
Sbjct: 316 YPGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSF 375

Query: 553 KAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDE 612
           KAFLEVVK RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+QG+DE
Sbjct: 376 KAFLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDI-DDSDTKTMAHARLNDLKLQGIDE 434

Query: 613 LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
           LSSVA EMVRLIETATAPI  VDSSG +NGWNAKV ELTGL   EAMGKSL+ ++V +ES
Sbjct: 435 LSSVASEMVRLIETATAPILAVDSSGIVNGWNAKVGELTGLTVGEAMGKSLVHDLVFDES 494

Query: 673 QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
              VE ++  A+ GEE+KNVE+KLR F  QKQ  V+Y++VNAC+SRDY +N+ G
Sbjct: 495 VETVEKMLYHAMRGEEEKNVEIKLRTFGPQKQKKVIYLVVNACSSRDYTDNIVG 548


>gi|406685299|gb|AFS51090.1| phytochrome P, partial [Torreya californica]
          Length = 548

 Score =  796 bits (2057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/533 (71%), Positives = 439/533 (82%), Gaps = 17/533 (3%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQ+LAV A SRLQ++P GDIGLLCDTVVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 17  VPSQRLAVRATSRLQSVPSGDIGLLCDTVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 76

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV V Q++ELKQPLCLV STL
Sbjct: 77  RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVKQAEELKQPLCLVGSTL 136

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINSKD----------------SMKLWGLVVCHHTS 373
           R+PHGCH QYM NMGSIASLVMAVI+N                   S+KLWGLVVCHHTS
Sbjct: 137 RAPHGCHAQYMANMGSIASLVMAVIVNGNGIDEDGVSGSGSGSGRSSIKLWGLVVCHHTS 196

Query: 374 PRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQ 433
           PR +PFPLR ACEFL+Q F LQ+ MELQ+A QL E +ILRTQ LLCDMLLRDAP  IVTQ
Sbjct: 197 PRAVPFPLRSACEFLMQTFGLQINMELQLAAQLIENSILRTQTLLCDMLLRDAPIGIVTQ 256

Query: 434 SPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGY 493
           SPSIMDLVKCDGAALYYGG  WL+GVTP E+QLKDIA WLL  HGD TGLSTDSLA+AGY
Sbjct: 257 SPSIMDLVKCDGAALYYGGMFWLLGVTPIEAQLKDIADWLLECHGDSTGLSTDSLADAGY 316

Query: 494 PGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFK 553
           PGAA LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFK
Sbjct: 317 PGAASLGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSFK 376

Query: 554 AFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDEL 613
           AFLEVVK RSFPWE  E++AIHSLQ+++R SFQ++++   +K   + + N  K+QG+DEL
Sbjct: 377 AFLEVVKRRSFPWENVEMDAIHSLQLILRGSFQDIDDSG-TKTMVHARLNDLKLQGIDEL 435

Query: 614 SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ 673
           SSVA EMVRLIETATAPI  VDSSG +NGWNAKV ELTGLP  EAMGKSL+ ++V EES 
Sbjct: 436 SSVASEMVRLIETATAPILAVDSSGIVNGWNAKVGELTGLPVGEAMGKSLVHDLVFEESI 495

Query: 674 GAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
             VE ++  AL GEE+KNVE+KLR F  QKQ  V+Y++VNAC+SRDY + + G
Sbjct: 496 ETVEKMLYHALRGEEEKNVEIKLRTFGPQKQKKVIYLVVNACSSRDYTDKIVG 548


>gi|406685303|gb|AFS51092.1| phytochrome P, partial [Torreya jackii]
          Length = 554

 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/555 (69%), Positives = 446/555 (80%), Gaps = 25/555 (4%)

Query: 196 PSKSGDPALSLAGA--------VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTG 247
           P + GD A  ++ A        V SQ+LAV A SRLQ++P GDIGLLCDTVVE+V++LTG
Sbjct: 1   PVRRGDAAALVSWAGGGGGGGTVPSQRLAVRATSRLQSVPSGDIGLLCDTVVEEVRELTG 60

Query: 248 YDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHA 307
           YDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A
Sbjct: 61  YDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRA 120

Query: 308 IPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKD-------- 359
            PV V Q++ELKQPLCLV STLR+PHGCH QYM NMGSIASLVMAVI+N           
Sbjct: 121 TPVKVKQAEELKQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIVNGNGIDEDGVSG 180

Query: 360 --------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNI 411
                   S+KLWGLVVCHHTSPR +PFPLR ACEFL+Q F LQ+ MELQ+A QL E +I
Sbjct: 181 SGSGSGRSSIKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFGLQINMELQLAAQLIENSI 240

Query: 412 LRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAW 471
           LRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGG  WL+GVTPTE+QLKDIA 
Sbjct: 241 LRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGMFWLLGVTPTEAQLKDIAD 300

Query: 472 WLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWG 531
           WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARITSKDFLFWF SHTAKE+KWG
Sbjct: 301 WLLECHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITSKDFLFWFGSHTAKEMKWG 360

Query: 532 GAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEE 591
           GAKHHP+ KD+G +MHPRSSFKAFLEVVK RSFPWE  E++AIHSLQ+++R SFQ++++ 
Sbjct: 361 GAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSFPWENVEMDAIHSLQLILRGSFQDIDDS 420

Query: 592 NDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELT 651
             +K   + + N  K+QG+DELSSVA EMVRLIETATAPI  VDSSG +NGWN KV ELT
Sbjct: 421 G-TKTMVHARLNDLKLQGIDELSSVASEMVRLIETATAPILAVDSSGIVNGWNVKVGELT 479

Query: 652 GLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
           GLP  EAMGKSL+ ++V EES   VE ++  AL GEE+KNVE+KLR F  QKQ  V+Y++
Sbjct: 480 GLPVGEAMGKSLVHDLVFEESIETVEKMLYHALRGEEEKNVEIKLRTFGPQKQKKVIYLV 539

Query: 712 VNACTSRDYKNNVKG 726
           VNAC+SRDY + + G
Sbjct: 540 VNACSSRDYTDKIVG 554


>gi|406685345|gb|AFS51113.1| phytochrome P, partial [Cunninghamia lanceolata]
          Length = 531

 Score =  793 bits (2048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/512 (73%), Positives = 432/512 (84%), Gaps = 11/512 (2%)

Query: 212 SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
           SQ+LAV A SRLQA+P GDIGLLCDTVVE+V++LTGYDRVM+Y  H+D+HGEVV+EIRRS
Sbjct: 21  SQRLAVRATSRLQAVPNGDIGLLCDTVVEEVRELTGYDRVMVYKLHEDEHGEVVAEIRRS 80

Query: 272 DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
           DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQS ELKQPLCLV STLR+
Sbjct: 81  DLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVSVIQSVELKQPLCLVGSTLRA 140

Query: 332 PHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPFPL 381
           PHGCH QYM NMGSIASLVMAVI+N           + S+KLWGLVVCHHTSPR +PFPL
Sbjct: 141 PHGCHAQYMANMGSIASLVMAVIVNGNGNDEEGGSGRSSVKLWGLVVCHHTSPRAVPFPL 200

Query: 382 RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
           R ACEFL+Q F LQ+ MELQ+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDLV
Sbjct: 201 RSACEFLMQTFGLQINMELQLAAQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDLV 260

Query: 442 KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
           KCDGAALYYGGR WL+GVTPTE+Q+KDIA WLL  H D TGLSTDSLA+AGYPGAA LG 
Sbjct: 261 KCDGAALYYGGRFWLLGVTPTEAQIKDIADWLLEYHVDSTGLSTDSLADAGYPGAASLGD 320

Query: 502 AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
           AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+  +MHPRSSFKAFLEVVK 
Sbjct: 321 AVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDARRMHPRSSFKAFLEVVKR 380

Query: 562 RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMV 621
           RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   +++ N  K+QG+DELSSVA EMV
Sbjct: 381 RSLPWENVEMDAIHSLQLILRGSFQDI-DDSDTKTMVHSRLNDLKLQGIDELSSVASEMV 439

Query: 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLIC 681
           RLIETATAPI  VDSSGT+NGWNAKVAELTGLP  EAMGKSL+ ++V EES   VE ++ 
Sbjct: 440 RLIETATAPILAVDSSGTVNGWNAKVAELTGLPVGEAMGKSLVHDLVFEESMETVEKMLY 499

Query: 682 RALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
            AL GEEDKNVE+KLR F  QKQ  V+Y++VN
Sbjct: 500 HALRGEEDKNVEIKLRTFGPQKQKMVIYLVVN 531


>gi|371940272|dbj|BAL45573.1| truncate phytochrome A2 protein [Glycine max]
          Length = 759

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/735 (52%), Positives = 519/735 (70%), Gaps = 25/735 (3%)

Query: 43  NADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQ----ITAYLSKIQRGGLIQPFGC 98
             DA L A FE+S +S    +  R +    +GV + +     TAYL  +Q+G +IQPFGC
Sbjct: 27  TVDAKLHATFEESGSSFDYSSSVR-ISGTADGVNQPRHDKVTTAYLHHMQKGKMIQPFGC 85

Query: 99  MLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSGASLAKA 154
           +LA++E T ++I YSEN  EML + S +     D    G IG D +TLFT PS ++L KA
Sbjct: 86  LLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALG-IGTDIKTLFTAPSASALQKA 144

Query: 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQK 214
               E+ LLNP+L+H  +    KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS K
Sbjct: 145 LGFAEVLLLNPVLIHCKTSG--KPFYAIIHRVTGSMIIDFEPVKPYEVPMTAAGALQSYK 202

Query: 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLE 274
           LA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y FH+DDHGEV++EI +  LE
Sbjct: 203 LAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLE 262

Query: 275 PYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHG 334
           PYLG+H+PA DIPQA+RFLF +N+VRMI DCHA  V V+Q ++L   L L  STLR+PH 
Sbjct: 263 PYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVRVLQDEKLPFDLTLCGSTLRAPHS 322

Query: 335 CHLQYMTNMGSIASLVMAVIINSKDS------------MKLWGLVVCHHTSPRYIPFPLR 382
           CH QYM NM SIASLVMAV++N  +              +LWGLVVCH+T+PR++PFPLR
Sbjct: 323 CHAQYMANMDSIASLVMAVVVNDNEEDGDTDAIQPQKRKRLWGLVVCHNTTPRFVPFPLR 382

Query: 383 YACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVK 442
           YACEFL Q F++ +  E+++  Q+ EKNILRTQ LLCD+++RDAP  IV++SP+IMDLVK
Sbjct: 383 YACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDLVMRDAPLGIVSESPNIMDLVK 442

Query: 443 CDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQA 502
           CDGAAL Y  + W +GVTP+ESQ+++IA+WL   H D TG STDSL++AG+P A  LG  
Sbjct: 443 CDGAALIYKNKVWRLGVTPSESQIREIAFWLSEYHMDSTGFSTDSLSDAGFPSALSLGDV 502

Query: 503 VCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNR 562
           VCGMA  R+T+KD +FWFRSHTA E++WGGAKH    KD+G +MHPRSSFK FL+VVK R
Sbjct: 503 VCGMAAVRVTAKDVVFWFRSHTAAEIRWGGAKHEAGEKDDGRRMHPRSSFKVFLDVVKAR 562

Query: 563 SFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVR 622
           S PW+  EI+A+HSLQ+++R++F++ E  + +    NT+ +  K++G+ EL +V  E+VR
Sbjct: 563 SLPWKEYEIDAMHSLQLILRNAFKDTESMDLNTKAINTRLSDLKIEGMQELEAVTSEIVR 622

Query: 623 LIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICR 682
           LIETAT PI  VD  G +NGWN K+AELTGLP  EAMGK L+  +V + S   V+ ++  
Sbjct: 623 LIETATVPILAVDVDGLVNGWNIKIAELTGLPVGEAMGKHLL-TLVEDSSTDRVKKMLNL 681

Query: 683 ALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742
           ALLGEE+KNV+ +++    +     + ++VNAC SRD ++NV GVCFV  DIT +K +MD
Sbjct: 682 ALLGEEEKNVQFEIKTHGSKMDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMD 741

Query: 743 KFIRLQGDYEAIIQS 757
           KF R++GD   + ++
Sbjct: 742 KFTRIEGDTRQLYRT 756


>gi|57281885|emb|CAC85513.1| phytochrome A [Triticum aestivum]
          Length = 807

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/799 (49%), Positives = 525/799 (65%), Gaps = 60/799 (7%)

Query: 96  FGCMLAVEEPTFRIIGYSENCLEMLDLRSRS-----EDFELNGLIGIDARTLFTPPSGAS 150
           FGC+LA++E +F +I +SEN  EML   S +     +   L+  IG + R+LFT     +
Sbjct: 1   FGCLLALDEKSFNVIAFSENAPEMLTTVSHAVPSVNDPPRLD--IGTNVRSLFTDQGATA 58

Query: 151 LAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAV 210
           L KA    ++SLLNPILV   +    KPFYAI+HR    +V+D EP    +   S AGA+
Sbjct: 59  LHKALGFADVSLLNPILVQCKTSG--KPFYAIVHRATGCLVVDFEPVNPTEFPASAAGAL 116

Query: 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRR 270
           QS KLA  AIS++QALPGG I LLC+TVV++V +LTGYDRVM Y FH+D+HGEV +EI +
Sbjct: 117 QSYKLAAKAISKIQALPGGSIELLCNTVVKEVFELTGYDRVMAYKFHEDNHGEVFAEITK 176

Query: 271 SDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLR 330
             LEPYLG+H+PA DIPQAARFLF +N+VRMICD  +  + VI+ + L   + L  S LR
Sbjct: 177 PGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDVRSRSIKVIEDEALPFDISLCGSALR 236

Query: 331 SPHGCHLQYMTNMGSIASLVMAVIINSKDSMK---------------LWGLVVCHHTSPR 375
           + H CHLQYM NM SIASLVMAV++N  +                  LWGLVVCHH SPR
Sbjct: 237 AAHSCHLQYMENMNSIASLVMAVVVNENEEDDEVGSEQPAQQQQKKILWGLVVCHHESPR 296

Query: 376 YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA-PFSIVTQS 434
           Y+PFPLRYACEFL Q F++ +  E +V  QL EK+ILRTQ +L DML ++A P +IV+ +
Sbjct: 297 YVPFPLRYACEFLAQVFAVHVNKEFEVQKQLREKSILRTQTILSDMLFKEASPLTIVSGA 356

Query: 435 PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYP 494
           P+IMDL+KCDGAAL YG + W +G  PTESQ++D+A WL   H D TGLST+SL +AGYP
Sbjct: 357 PNIMDLIKCDGAALLYGDKVWRLGNAPTESQIRDLALWLSEVHMDSTGLSTESLHDAGYP 416

Query: 495 GAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKA 554
           GA+ LG +VCGMA A+I S D LFWFRSHTA+E++WGGAK+ P  +D+  +MHPR SFKA
Sbjct: 417 GASALGDSVCGMAVAKINSSDILFWFRSHTAQEIRWGGAKNDPSDQDDSRRMHPRLSFKA 476

Query: 555 FLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELS 614
           FLEVVK +S  W  SE++AIHSLQ+++R +   + +    K   + Q    K+ G+ EL 
Sbjct: 477 FLEVVKMKSLAWTDSEMDAIHSLQLILRGTVDGVVKPT-GKASLDEQIGDLKLDGLAELQ 535

Query: 615 SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
           +V  EMVRL+ETAT PI  VD +G +NGWN K AELTGL   +A+G+ ++  +V E S  
Sbjct: 536 AVTSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHIL-TLVEESSVS 594

Query: 675 AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734
            V+ ++  AL G+E+K V  +++    ++    V ++VNAC SRD  ++V GVCFV QD+
Sbjct: 595 VVQRMLYLALQGKEEKEVRFEVKTHGPKRDDGPVILVVNACASRDLHDDVVGVCFVAQDV 654

Query: 735 THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI- 793
           T  K++MDKF R++GDY AII + NPLIPPIF +DE   C EWNAAM K+TGW R EV+ 
Sbjct: 655 TVHKLVMDKFTRVEGDYMAIIHNPNPLIPPIFGADEFGWCCEWNAAMTKLTGWHREEVLN 714

Query: 794 --------------------------------GITGQGTENFPFGFFNRQGQFVEVALTA 821
                                            + G+ TE  PFGFF+R G++ +  L+ 
Sbjct: 715 KMLLGEVFDSSNASCLLKNKDAFVSLCVVINSALAGEETEKAPFGFFDRSGKYTDCLLSV 774

Query: 822 SRRTDAEGKVIGCFCFMQI 840
           +RR +  G + G FCF+ I
Sbjct: 775 NRRENEGGLITGVFCFIHI 793


>gi|406685395|gb|AFS51138.1| phytochrome P, partial [Metasequoia glyptostroboides]
          Length = 531

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/512 (72%), Positives = 432/512 (84%), Gaps = 11/512 (2%)

Query: 212 SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
           SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRRS
Sbjct: 21  SQRLAVRATSRLQAVPSGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIRRS 80

Query: 272 DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
           DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ++ELKQPLCLV STLR+
Sbjct: 81  DLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRASPVRVIQAEELKQPLCLVGSTLRA 140

Query: 332 PHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPFPL 381
           PHGCH QYM NMGSIASLVMAVI+N           + S+KLWGLVVCHHTSPR +PFPL
Sbjct: 141 PHGCHAQYMANMGSIASLVMAVIVNGNGNGEEGGSGRSSVKLWGLVVCHHTSPRAVPFPL 200

Query: 382 RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
           R ACEFL+Q F LQ+ MELQ+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDLV
Sbjct: 201 RSACEFLMQTFGLQINMELQLAAQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDLV 260

Query: 442 KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
           KCDGAALYYGG+ WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG 
Sbjct: 261 KCDGAALYYGGKFWLLGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLGD 320

Query: 502 AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
           AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+  +MHPRSSFKAFLEVVK 
Sbjct: 321 AVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDARRMHPRSSFKAFLEVVKR 380

Query: 562 RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMV 621
           RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  ++QG+DELSSVA EMV
Sbjct: 381 RSLPWENVEMDAIHSLQLILRGSFQDI-DDSDTKTMVHARLNDLRLQGIDELSSVASEMV 439

Query: 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLIC 681
           RLIETATAPI  VDS G +NGWNAKVAELTGLP +EAMGKSL+ ++V EES   VE ++ 
Sbjct: 440 RLIETATAPILAVDSGGIVNGWNAKVAELTGLPVAEAMGKSLVHDLVFEESMETVEKMLY 499

Query: 682 RALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
            AL GEE+KNVE+KLR F  QKQ  V+Y++VN
Sbjct: 500 HALRGEEEKNVEIKLRTFGPQKQKMVIYLVVN 531


>gi|406685269|gb|AFS51075.1| phytochrome P, partial [Austrotaxus spicata]
          Length = 546

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/532 (70%), Positives = 436/532 (81%), Gaps = 15/532 (2%)

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           +V SQ+LAV A SRLQA+  GDIGLLCDTVVE+V++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 16  SVPSQRLAVRATSRLQAVSSGDIGLLCDTVVEEVRELTGYDRVMVYEFHEDEHGEVVAEI 75

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ++ELKQPLCLV ST
Sbjct: 76  RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVKVIQAEELKQPLCLVGST 135

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMK--------------LWGLVVCHHTSP 374
           LR+PHGCH QYM NMGSIASLVMAVI+N   +                LWGLVVCHHTSP
Sbjct: 136 LRAPHGCHAQYMANMGSIASLVMAVIVNGNGNGNDEDGGGGSGRSSRRLWGLVVCHHTSP 195

Query: 375 RYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS 434
           R +PFPLR ACEFL+Q F LQ+ MELQ+A QL E NILRTQ LLCDMLLRDAP  IVTQS
Sbjct: 196 RAVPFPLRSACEFLMQTFGLQINMELQLAAQLIENNILRTQTLLCDMLLRDAPIGIVTQS 255

Query: 435 PSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYP 494
           PSIMDLVKCDGA LYYGG CWL+GVTP E+Q+KDIA WLL  HGD TGLSTDSLA+AGYP
Sbjct: 256 PSIMDLVKCDGACLYYGGMCWLLGVTPMEAQIKDIADWLLECHGDSTGLSTDSLADAGYP 315

Query: 495 GAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKA 554
           GAA LG AVCGMA ARITSKDFLFWFRS+TAKE+KWGGAKHHP+ KD+G +MHPRSSFKA
Sbjct: 316 GAASLGDAVCGMAAARITSKDFLFWFRSNTAKEMKWGGAKHHPDDKDDGRRMHPRSSFKA 375

Query: 555 FLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELS 614
           FLEVVK RS PWE  E++AIHSLQ+++R SFQ++++ + +K   + + N  K+QG+DELS
Sbjct: 376 FLEVVKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSH-TKTMVHARLNDLKLQGIDELS 434

Query: 615 SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQG 674
           SVA EMVRLIETATAPI  VD SG INGWNAKV ELTGLP  EAMGKSL+ ++V  ES  
Sbjct: 435 SVASEMVRLIETATAPILAVDCSGIINGWNAKVGELTGLPVGEAMGKSLVHDLVLNESIE 494

Query: 675 AVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
            VE ++  AL GEE+KNVE+KLR F  QK   V+Y++VNAC+SRDY +N+ G
Sbjct: 495 TVEKMLYHALRGEEEKNVEIKLRTFGPQKXKKVIYLVVNACSSRDYTDNIVG 546


>gi|406685407|gb|AFS51144.1| phytochrome P, partial [Sequoia sempervirens]
          Length = 531

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/515 (72%), Positives = 431/515 (83%), Gaps = 11/515 (2%)

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           A+ SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 18  AMPSQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEI 77

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ++ELKQPLCLV ST
Sbjct: 78  RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRASPVRVIQAEELKQPLCLVGST 137

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIP 378
           LR+PHGCH QYM NMGSIASLVMAVI+N           + S+KLWGLVVCHHTSPR + 
Sbjct: 138 LRAPHGCHSQYMANMGSIASLVMAVIVNGNGNDEEGASGRSSVKLWGLVVCHHTSPRAVS 197

Query: 379 FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
           FPLR ACEFL+Q F LQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIM
Sbjct: 198 FPLRSACEFLMQTFGLQINMEMQLAAQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIM 257

Query: 439 DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
           DLVKCDGAALYYGG+ WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA 
Sbjct: 258 DLVKCDGAALYYGGKFWLLGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAAS 317

Query: 499 LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
           LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEV
Sbjct: 318 LGDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEV 377

Query: 559 VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
           VK RS PWE  E++AIHSLQ+++R SFQ++++ + +K   + + N  K+QG+DELSSVA 
Sbjct: 378 VKRRSLPWENVEMDAIHSLQLILRGSFQDIDDSH-TKTMVHARLNDLKLQGIDELSSVAS 436

Query: 619 EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
           EMVRLIETATAPI  VDS G +NGWNAKVAELTGLP SEAMGKSL+ ++V EES   VE 
Sbjct: 437 EMVRLIETATAPILAVDSGGIVNGWNAKVAELTGLPVSEAMGKSLVHDLVFEESMETVEK 496

Query: 679 LICRALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
           ++  AL GEE+KNVE+KLR F   KQ  V+Y++ N
Sbjct: 497 MLYHALRGEEEKNVEIKLRTFGPXKQKMVIYLIAN 531


>gi|406685409|gb|AFS51145.1| phytochrome P, partial [Sequoiadendron giganteum]
          Length = 531

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/512 (72%), Positives = 429/512 (83%), Gaps = 11/512 (2%)

Query: 212 SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
           SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRRS
Sbjct: 21  SQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIRRS 80

Query: 272 DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
           DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ++ELKQPLCLV STLR+
Sbjct: 81  DLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRASPVRVIQAEELKQPLCLVGSTLRA 140

Query: 332 PHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPFPL 381
           PHGCH QYM NMGSIASL MAVI+N           + S+KLWGLVVCHHTSPR +PFPL
Sbjct: 141 PHGCHAQYMANMGSIASLAMAVIVNGNGNDEEGASGRSSVKLWGLVVCHHTSPRAVPFPL 200

Query: 382 RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
           R ACEFL+Q F LQ+ MELQ+A QL E NILRTQ LLCDMLLRDAP  IV+QSPSIMDLV
Sbjct: 201 RSACEFLMQTFGLQINMELQLAAQLTENNILRTQTLLCDMLLRDAPIGIVSQSPSIMDLV 260

Query: 442 KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
           KCDGAALYYGG+ WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGA  LG 
Sbjct: 261 KCDGAALYYGGKFWLLGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGATSLGD 320

Query: 502 AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
           AVCGMA ARITSKDFLFWFRSHT KE+KWGGAKHHP+ KD+  +MHPRSSFKAFLEVVK 
Sbjct: 321 AVCGMAAARITSKDFLFWFRSHTVKEMKWGGAKHHPDDKDDSRRMHPRSSFKAFLEVVKR 380

Query: 562 RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMV 621
           RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   + + N  K+QG+DELSSVA EMV
Sbjct: 381 RSLPWENVEMDAIHSLQLILRGSFQDI-DDSDTKTMVHARLNDLKLQGIDELSSVASEMV 439

Query: 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLIC 681
           RLIETATAPI  VDS G +NGWNAKVAELTGLP +EAMGKSL+ ++V EES   VE ++ 
Sbjct: 440 RLIETATAPILAVDSGGIVNGWNAKVAELTGLPVAEAMGKSLVHDLVFEESMETVEKMLH 499

Query: 682 RALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
            AL GEE+KNVE+KLR F  QKQ  V+Y++VN
Sbjct: 500 HALRGEEEKNVEIKLRTFGPQKQKMVIYLIVN 531


>gi|406685413|gb|AFS51147.1| phytochrome P, partial [Taxodium distichum]
          Length = 531

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/512 (71%), Positives = 429/512 (83%), Gaps = 11/512 (2%)

Query: 212 SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
           SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRRS
Sbjct: 21  SQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIRRS 80

Query: 272 DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
           DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ++ELKQPLCLV STLR+
Sbjct: 81  DLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRANPVRVIQAEELKQPLCLVGSTLRA 140

Query: 332 PHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPFPL 381
           PHGCH QYM NMGSIASLVMAVI+N           + ++KLWGLVVCHHTSPR +PFPL
Sbjct: 141 PHGCHAQYMANMGSIASLVMAVIVNGNGNDEEGSSGRSAVKLWGLVVCHHTSPRAVPFPL 200

Query: 382 RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
           R ACEFL+Q F LQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDLV
Sbjct: 201 RSACEFLMQTFGLQINMEMQLAAQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDLV 260

Query: 442 KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
           KCDGAALYYGG+ WL+GVTPT +Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG 
Sbjct: 261 KCDGAALYYGGKFWLLGVTPTGAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLGD 320

Query: 502 AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
           AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+  +MHPRSSFKAFLEVVK 
Sbjct: 321 AVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDARRMHPRSSFKAFLEVVKR 380

Query: 562 RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMV 621
           RS PWE  E++AIHSLQ+++R SFQ++ +++++K   + Q +  K+QG+DELSSVA EMV
Sbjct: 381 RSLPWENVEMDAIHSLQLILRGSFQDI-DDSETKTMVHVQLHDLKLQGIDELSSVASEMV 439

Query: 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLIC 681
           RLIETAT PI  VDS+G +NGWNAK AELTGLP  EAMGKSL+ ++V EES   VE ++ 
Sbjct: 440 RLIETATVPILAVDSAGIVNGWNAKAAELTGLPVGEAMGKSLVHDLVFEESMETVEKMLY 499

Query: 682 RALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
            AL GEEDKNVE+KLR F  Q+Q  V+Y++VN
Sbjct: 500 HALRGEEDKNVEIKLRTFGPQRQKKVIYLVVN 531


>gi|406685341|gb|AFS51111.1| phytochrome P, partial [Cryptomeria japonica]
          Length = 529

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/512 (72%), Positives = 430/512 (83%), Gaps = 9/512 (1%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 19  VPSQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVR+ICDC A PV VIQ +ELKQPLCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNRVRVICDCRANPVGVIQVEELKQPLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIIN--------SKDSMKLWGLVVCHHTSPRYIPFPL 381
           R+PHGCH QYM NMGSIASLVMAVI+N        S   +KLWGLVVCHHTSPR +PFPL
Sbjct: 139 RAPHGCHAQYMANMGSIASLVMAVIVNGNGNDEEGSSGRVKLWGLVVCHHTSPRAVPFPL 198

Query: 382 RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
           R ACEFL+Q F LQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDLV
Sbjct: 199 RSACEFLMQTFGLQINMEMQLAAQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDLV 258

Query: 442 KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
           KCDGAALYYGG+ WL+GVTPT +Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG 
Sbjct: 259 KCDGAALYYGGKFWLLGVTPTGAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLGD 318

Query: 502 AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
           AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK 
Sbjct: 319 AVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKR 378

Query: 562 RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMV 621
           RS PWE  E++AIHSLQ+++R SFQ++ +++++K   + Q +  K+QG+DELSSVA EMV
Sbjct: 379 RSLPWENVEMDAIHSLQLILRGSFQDI-DDSETKTMVHVQLHDLKLQGIDELSSVANEMV 437

Query: 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLIC 681
           RLIETATAPI  VDS+G +NGWNAK AELTGLP  EAMGKSL+ ++V EES   VE ++ 
Sbjct: 438 RLIETATAPILAVDSAGIVNGWNAKAAELTGLPVGEAMGKSLVHDLVFEESMETVEKMLY 497

Query: 682 RALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
            AL GEED+NVE+KLR F  Q+Q  V+Y++VN
Sbjct: 498 HALRGEEDRNVEIKLRTFGPQRQKKVIYLVVN 529


>gi|218683865|gb|ACL00887.1| phytochrome B [Cardamine concatenata]
          Length = 544

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/544 (67%), Positives = 442/544 (81%), Gaps = 14/544 (2%)

Query: 182 ILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVED 241
           ILHRIDVG+VIDLEP+++ DPALS+AGAVQSQKLAV AIS+LQ+LPGGDI LLCDTVVE 
Sbjct: 1   ILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVES 60

Query: 242 VQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRM 301
           V+ LTGYDRVM+Y FH+D+HGEVV+E +R DL+PY G+H+PA DIPQA+RFLFKQNRVRM
Sbjct: 61  VRDLTGYDRVMVYKFHEDEHGEVVAESKRDDLQPYFGLHYPATDIPQASRFLFKQNRVRM 120

Query: 302 ICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS---- 357
           I DCHA PV+++Q   L Q +CLV STLR+PHGCH QYM NMGSIASL MAVIIN     
Sbjct: 121 IVDCHATPVLLVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEEE 180

Query: 358 -------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKN 410
                  ++SM+LWGLVVCHHTS R IPFPLRYACEFL+QAF LQL MELQ+A+Q++EK 
Sbjct: 181 GNNVGGGRNSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKR 240

Query: 411 ILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470
           +LRTQ LLCDMLLRD+P  IVTQSPSIM+LVKCDGAA  Y G+ +L+G++PTE+Q+KD+ 
Sbjct: 241 VLRTQTLLCDMLLRDSPAGIVTQSPSIMNLVKCDGAAFLYHGKYYLLGISPTEAQIKDVV 300

Query: 471 WWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKW 530
            WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A IT++DFLFWFRSHT KE+KW
Sbjct: 301 EWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITNRDFLFWFRSHTEKEIKW 360

Query: 531 GGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEE 590
           GGAKHHPE KD+G +MHPR SF+AFLEVVK+RS PWE +E++AIHSLQ+++RDSF+E E 
Sbjct: 361 GGAKHHPEDKDDGQRMHPRLSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEA 420

Query: 591 ENDSKVQGNTQQNGSKM---QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKV 647
             +SK      Q    M   QG+DEL +VA EMVRLIETAT PIF VD+ G INGWNAK+
Sbjct: 421 AMNSKAAYGAVQPCRDMSGEQGLDELGAVAREMVRLIETATVPIFAVDAGGYINGWNAKI 480

Query: 648 AELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707
           AELTGL   EAMGKSL+ +++++E++  V  L+ RAL G+EDKNVE+KL+ F  +     
Sbjct: 481 AELTGLSVEEAMGKSLVSDLIYKENEEIVIKLLSRALRGDEDKNVEVKLKTFRPELHGKA 540

Query: 708 VYIL 711
           V+++
Sbjct: 541 VFMV 544


>gi|406685367|gb|AFS51124.1| phytochrome P, partial [Glyptostrobus pensilis]
          Length = 531

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/512 (71%), Positives = 427/512 (83%), Gaps = 11/512 (2%)

Query: 212 SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
           SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HG VV+EIRRS
Sbjct: 21  SQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGGVVAEIRRS 80

Query: 272 DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
           DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ++ELKQPLCLV STLR+
Sbjct: 81  DLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRANPVRVIQAEELKQPLCLVGSTLRA 140

Query: 332 PHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPFPL 381
           PHGCH QYM NMGSIASLVMAVI+N           + ++KLWGLVVCHHTSPR +PFPL
Sbjct: 141 PHGCHAQYMANMGSIASLVMAVIVNGNGNDEEGSSGRSAVKLWGLVVCHHTSPRAVPFPL 200

Query: 382 RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
           R ACEFL+Q F LQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDLV
Sbjct: 201 RSACEFLMQTFGLQINMEMQLAAQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDLV 260

Query: 442 KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
           KCDGAALYYGG+ WL+GVTPT +Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG 
Sbjct: 261 KCDGAALYYGGKFWLLGVTPTGAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLGD 320

Query: 502 AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
           AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+  +MHPRSSFKAFLEVVK 
Sbjct: 321 AVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDARRMHPRSSFKAFLEVVKR 380

Query: 562 RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMV 621
           RS PWE  E++ IHSLQ+++R SFQ++ +++++K   + Q +  K+QG+DELSSVA EMV
Sbjct: 381 RSLPWENVEMDTIHSLQLILRGSFQDI-DDSETKTMVHVQLHDLKLQGIDELSSVASEMV 439

Query: 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLIC 681
           RLIETAT PI  VDS+G +NGWNAK AELTGLPA EAMGKSL+ ++V EES   VE ++ 
Sbjct: 440 RLIETATVPILAVDSAGIVNGWNAKAAELTGLPAGEAMGKSLVHDLVFEESMETVEKMLY 499

Query: 682 RALLGEEDKNVELKLRKFELQKQHSVVYILVN 713
            AL GEEDKNVE+KLR F  Q+Q   +Y++VN
Sbjct: 500 HALRGEEDKNVEIKLRTFGPQRQKKGIYLVVN 531


>gi|406685423|gb|AFS51152.1| phytochrome P, partial [Thuja standishii]
          Length = 530

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/512 (71%), Positives = 426/512 (83%), Gaps = 11/512 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 19  VPSQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ++ELKQPLCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAEELKQPLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPF 379
           R+PHGCH QYM NMGSIASL MAVI+N           + ++KLWGLVVCHHTSPR +PF
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNGNGKDEGGSSGRSAVKLWGLVVCHHTSPRAVPF 198

Query: 380 PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
           PLR ACEFL+Q FSLQ+ ME+Q+A+QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMD
Sbjct: 199 PLRSACEFLMQTFSLQINMEMQLAVQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMD 258

Query: 440 LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
           LVKCDGAALYYGG+ WL+GVTPT +Q+KDIA WLL   GD TGLSTDSLA+AGYPGAA L
Sbjct: 259 LVKCDGAALYYGGKFWLLGVTPTGAQIKDIADWLLEYQGDSTGLSTDSLADAGYPGAASL 318

Query: 500 GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
           G AVCGMA ARITSKDFLFWFRSHTA E+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVV
Sbjct: 319 GDAVCGMAAARITSKDFLFWFRSHTANEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVV 378

Query: 560 KNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACE 619
           K RS PWE  E++AIHSLQ+++R SFQ++ + +++K   + + +  K+QG+DELSSVACE
Sbjct: 379 KRRSLPWENIEMDAIHSLQLILRGSFQDI-DNSENKTMVHARMSDLKLQGMDELSSVACE 437

Query: 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679
           MVRLIETA API  VDS+G +NGWN+  AELTGLPA EAMGKS + ++V EES   VE +
Sbjct: 438 MVRLIETAHAPILAVDSAGIVNGWNSYAAELTGLPAEEAMGKSFVHDLVFEESIETVEKM 497

Query: 680 ICRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
           +  AL GEEDKNVE+KLR F LQ Q  V+ ++
Sbjct: 498 LDNALRGEEDKNVEIKLRTFGLQMQKEVILVV 529


>gi|406685425|gb|AFS51153.1| phytochrome P, partial [Thuja sutchuenensis]
          Length = 530

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/512 (70%), Positives = 425/512 (83%), Gaps = 11/512 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 19  VPSQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ++ELKQPLCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAEELKQPLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPF 379
           R+PHGCH QYM NMGSIASL MAVI+N           + ++KLWGLVVCHHTSPR +PF
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNGNGKDEGGSSGRSAVKLWGLVVCHHTSPRAVPF 198

Query: 380 PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
           PLR ACEFL+Q FSLQ+ ME+Q+A+QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMD
Sbjct: 199 PLRSACEFLMQTFSLQINMEMQLAVQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMD 258

Query: 440 LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
           LVKCDGAALYYGG+ WL+GVTPT +Q+KDIA WLL   GD TGLSTDSLA+AGYPGAA L
Sbjct: 259 LVKCDGAALYYGGKFWLLGVTPTGAQIKDIADWLLEYQGDSTGLSTDSLADAGYPGAASL 318

Query: 500 GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
           G AVCGMA ARITSKDFLFWFRSHTA E+KWGGAKHHP+ KD+G +MHPRSSFKA LEVV
Sbjct: 319 GDAVCGMAAARITSKDFLFWFRSHTANEIKWGGAKHHPDDKDDGRRMHPRSSFKASLEVV 378

Query: 560 KNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACE 619
           K RS PWE  E++AIHSLQ+++R SFQ++ + +++K   + + +  K+QG+DELSSVACE
Sbjct: 379 KRRSLPWENVEMDAIHSLQLILRGSFQDI-DNSENKTMVHARMSDLKLQGMDELSSVACE 437

Query: 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679
           MVRLIETA API  VDS+G +NGWN+  AELTGLPA EAMGKS + ++V EES   VE +
Sbjct: 438 MVRLIETAHAPILAVDSAGIVNGWNSYAAELTGLPAEEAMGKSFVHDLVFEESIETVEKM 497

Query: 680 ICRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
           +  AL GEEDKNVE+KLR F LQ Q  V+ ++
Sbjct: 498 LDNALRGEEDKNVEIKLRTFGLQMQKEVILVV 529


>gi|15425967|gb|AAK97634.1| phytochrome C [Hordeum vulgare]
          Length = 830

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/806 (48%), Positives = 527/806 (65%), Gaps = 53/806 (6%)

Query: 330  RSPHGCHLQYMTNMGSIASLVMAVIINSK-------------DSMKLWGLVVCHHTSPRY 376
            R+PHGCH QYM NMGSIASLVM+V +N                  KLWGLVVCHHTSPR+
Sbjct: 1    RAPHGCHAQYMANMGSIASLVMSVTVNEDDDEDGDTGSDQQPKGRKLWGLVVCHHTSPRF 60

Query: 377  IPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPS 436
            +PFPLRYACEFL+Q F +QL  E+++A Q  E++ILRTQ LLCDMLL DAP  I TQSP+
Sbjct: 61   VPFPLRYACEFLLQVFGIQLNKEVELASQAKERHILRTQTLLCDMLLGDAPVGIFTQSPN 120

Query: 437  IMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGA 496
            +MDLVKCDGAAL Y  +  ++G  P+E ++K IA WLL  H   TGLSTDSL EAGYPGA
Sbjct: 121  VMDLVKCDGAALCYQNQIMVLGSAPSEGEIKKIAAWLLECHDGSTGLSTDSLLEAGYPGA 180

Query: 497  ALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFKAF 555
            + LG+ VCGMA  +I+SK F+FWFRSHTAKE+KW GAKH P +  DNG +MHPRSSF+AF
Sbjct: 181  SALGEVVCGMAAIKISSKGFIFWFRSHTAKEIKWSGAKHEPGDADDNGRRMHPRSSFRAF 240

Query: 556  LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ---QNGSKMQGVDE 612
            LEVVK RS PWE  E++AIHSLQ+++R S Q+ E+ ND+ V    +    +  K+QG+ E
Sbjct: 241  LEVVKWRSVPWEDVEMDAIHSLQLILRGSLQD-EDANDNNVGSIVEAPSDDVRKIQGLLE 299

Query: 613  LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES 672
            L  V  EMVRLIETATAPI  VD  G+INGWN KVAE+TGLP +EA+G  L+D +V  +S
Sbjct: 300  LRVVTNEMVRLIETATAPILAVDIVGSINGWNGKVAEITGLPTTEAIGMLLVD-LVEGDS 358

Query: 673  QGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQ 732
               ++ ++  A+ G E++N E+KL+ F  Q+ +  V ++VNAC SRD  + V GVCFV Q
Sbjct: 359  VEVIKQMLNSAMQGTEEQNFEIKLKTFHQQEGNGPVVLMVNACCSRDLSDKVVGVCFVAQ 418

Query: 733  DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV 792
            D+T  K++MDK+ ++QGDY AI+++ N LIPPIF  ++   C EWN AM+K+TG  R + 
Sbjct: 419  DLTGHKMVMDKYTQIQGDYVAIVKNPNELIPPIFMINDLGSCLEWNEAMQKITGIKREDA 478

Query: 793  IG---------------------------------ITGQGTENFPFGFFNRQGQFVEVAL 819
            I                                  I+GQ  E   FGFF+  G+++E  L
Sbjct: 479  IDKLLIGEVFTLHDYGCRVKDQATITKLSILMNTVISGQEPEKLAFGFFSTDGKYMESLL 538

Query: 820  TASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNG 879
            TA++RTDAEGK+ G  CF+ +  P+LQ AL+ Q + +       KEL YIRQE+KNPLNG
Sbjct: 539  TANKRTDAEGKITGALCFLHVPSPELQHALQVQKMSEQAAARSFKELTYIRQELKNPLNG 598

Query: 880  IRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNI 939
            ++F  KLLE S ++E QRQ   ++  C+ Q+  I+   DL  IE+  ME+ + EF L   
Sbjct: 599  MQFTRKLLEPSDLTEEQRQLFASNVLCQEQLKKILHDNDLEGIEQCYMEMNTVEFNLEEA 658

Query: 940  LDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGW 999
            L+ V+ Q M L ++K + L  D P E+ ++ L GD +RLQ VL+D+L C ++     +G 
Sbjct: 659  LNTVLMQGMSLSKEKQISLDRDWPVEVSSMYLYGDDLRLQQVLADYLACTLQFTRPAEGP 718

Query: 1000 VEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRK 1059
            + ++V+P  + I    Q  H++FR+ HP  G+P  LI++M+       + EGLGL +S+K
Sbjct: 719  IVLQVIPKKEHIGSGMQIAHLEFRVVHPAPGVPEALIQEMFR-HGPGVSREGLGLHISQK 777

Query: 1060 LLIMMNGRVRYVRENSKCYFVIDLEL 1085
            L+  M+G V+Y+RE     F++ +E 
Sbjct: 778  LVKTMSGTVQYLREAESSSFIVLVEF 803


>gi|406685419|gb|AFS51150.1| phytochrome P, partial [Thuja occidentalis]
          Length = 530

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/513 (70%), Positives = 428/513 (83%), Gaps = 11/513 (2%)

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           +V SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EI
Sbjct: 18  SVPSQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEI 77

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
           RRSDLEPYLG+H+PA DIPQA+RFLF QNRVR+ICDC A PV VIQ++ELKQPLCLV ST
Sbjct: 78  RRSDLEPYLGLHYPATDIPQASRFLFMQNRVRVICDCRATPVRVIQAEELKQPLCLVGST 137

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIP 378
           LR+PHGCH QYM NMGSIASL MAVI+N           + ++KLWGLVVCHHTSPR +P
Sbjct: 138 LRAPHGCHAQYMANMGSIASLAMAVIVNGNGKDEGGSSGRSAVKLWGLVVCHHTSPRAVP 197

Query: 379 FPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIM 438
           FPLR ACEFL+Q FSLQ+ ME+Q+A+QL E NILRTQ LLCDMLLRDAP  IV+QSPSIM
Sbjct: 198 FPLRSACEFLMQTFSLQINMEMQLAVQLTENNILRTQTLLCDMLLRDAPIGIVSQSPSIM 257

Query: 439 DLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAAL 498
           DLVKCDGAALYYGG+ W++GVTPT +Q+KDIA WLL   GD TGLSTDSLA+AGYPGAA 
Sbjct: 258 DLVKCDGAALYYGGKFWMLGVTPTGAQIKDIADWLLEYQGDSTGLSTDSLADAGYPGAAS 317

Query: 499 LGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEV 558
           L  A+CGMA ARITSKDFLFWFRSHTA E+KWGGAKHHP+ KD+G +MHPRSSFKAFLEV
Sbjct: 318 LRDAICGMAAARITSKDFLFWFRSHTANEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEV 377

Query: 559 VKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVAC 618
           VK RS PWE  E++AIHSLQ+++R SFQ++ +++++K   + + +  K+QG+DELSSVAC
Sbjct: 378 VKRRSLPWENVEMDAIHSLQLILRGSFQDI-DDSENKTMVHARMSDLKLQGMDELSSVAC 436

Query: 619 EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
           EMVRLIETA API  VDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   VE 
Sbjct: 437 EMVRLIETAHAPILAVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVFEESIETVEK 496

Query: 679 LICRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
           ++  AL GEEDKNVE+KLR F LQ Q  V+ ++
Sbjct: 497 MLDNALRGEEDKNVEIKLRTFGLQMQKEVILVV 529


>gi|406685421|gb|AFS51151.1| phytochrome P, partial [Thuja plicata]
          Length = 530

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/512 (70%), Positives = 425/512 (83%), Gaps = 11/512 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 19  VPSQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDL PYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ++ELKQPLCLV STL
Sbjct: 79  RSDLGPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAEELKQPLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPF 379
           R+PHGCH QYM NMGSIASL MAVI+N           + ++KLWGLVVCHHTSPR +PF
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNGNGKDEGGSSGRSAVKLWGLVVCHHTSPRAVPF 198

Query: 380 PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
           PLR ACEFL+Q FSLQ+ ME+Q+A+QLAE NILRTQ LLCDMLLRDAP  IVTQSPSIMD
Sbjct: 199 PLRSACEFLMQTFSLQINMEMQLAVQLAENNILRTQTLLCDMLLRDAPIGIVTQSPSIMD 258

Query: 440 LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
           LVKCDGAALYYGG+ WL+GVTPT +Q+KDIA WLL   GD TGLSTDSLA+AGYPGAA L
Sbjct: 259 LVKCDGAALYYGGKFWLLGVTPTGAQIKDIADWLLEYQGDSTGLSTDSLADAGYPGAASL 318

Query: 500 GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
           G AVCGMA ARITSKDFLFWFRSHTA E+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVV
Sbjct: 319 GDAVCGMAAARITSKDFLFWFRSHTANEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVV 378

Query: 560 KNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACE 619
           K RS PW+  E++AIHSLQ+++R SFQ++ + +++K   + + +  K+QG+D LSSVACE
Sbjct: 379 KRRSLPWDNVEMDAIHSLQLILRGSFQDI-DNSENKTMVHARMSDLKLQGMDGLSSVACE 437

Query: 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679
           MVRLIETA API  VDS+G +NGWN+  AELTGLPA EAMGKS + ++V EES   VE +
Sbjct: 438 MVRLIETAHAPILAVDSAGIVNGWNSYAAELTGLPAEEAMGKSFVHDLVFEESIETVEKM 497

Query: 680 ICRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
           +  AL GEEDKNVE+KLR F LQ Q  V+ ++
Sbjct: 498 LDNALRGEEDKNVEIKLRTFGLQMQKEVILVV 529


>gi|406685417|gb|AFS51149.1| phytochrome P, partial [Tetraclinis articulata]
          Length = 530

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/513 (70%), Positives = 427/513 (83%), Gaps = 13/513 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 19  VPSQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMICDC A PV +IQ++EL QPLCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMICDCRAAPVSIIQAEELPQPLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPF 379
           R+PHGCH QYM NMGSIASL MAVI+N+          +++ KLWGLVVCHHTSPR +PF
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNANGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPF 198

Query: 380 PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
           PLR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMD
Sbjct: 199 PLRSACEFLMQTFSLQINMEMQMAAQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMD 258

Query: 440 LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
           LVKCDGAALYYGG+ WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+A YPGAA L
Sbjct: 259 LVKCDGAALYYGGKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADARYPGAASL 318

Query: 500 GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
           G AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSF+AFLEVV
Sbjct: 319 GDAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFQAFLEVV 378

Query: 560 KNRSFPWEVSEINAIHSLQIVMRDSFQEMEE-ENDSKVQGNTQQNGSKMQGVDELSSVAC 618
           K RSFPW+  E++AIHSLQ+++R SF+++++ EN + V  + Q N  K+QG+DEL+S AC
Sbjct: 379 KRRSFPWDNVEMDAIHSLQLILRGSFKDIDDCENKTMV--HAQMNDLKLQGMDELNSAAC 436

Query: 619 EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678
           EMVR+IETA API GVDS G +NGWN+  AELTGLPA EAMGKSL+ +++ EES   V  
Sbjct: 437 EMVRVIETAHAPILGVDSDGIVNGWNSYAAELTGLPAEEAMGKSLVHDLIVEESIETVAK 496

Query: 679 LICRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
           ++  AL GEEDKNVE+KLR F  Q Q  V+ ++
Sbjct: 497 MLYNALRGEEDKNVEIKLRTFAPQTQKEVILVV 529


>gi|406685427|gb|AFS51154.1| phytochrome P, partial [Thujopsis dolabrata]
          Length = 530

 Score =  763 bits (1969), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/510 (70%), Positives = 422/510 (82%), Gaps = 11/510 (2%)

Query: 212 SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
           SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRRS
Sbjct: 21  SQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIRRS 80

Query: 272 DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
           DLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ++EL QPLCLV STLR+
Sbjct: 81  DLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRATPVRVIQAEELNQPLCLVGSTLRA 140

Query: 332 PHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPFPL 381
           PHGCH QYM NMGSIASL MAVI+N           + + KLWGLVVCHHT+PR +PFPL
Sbjct: 141 PHGCHAQYMANMGSIASLAMAVIVNGNGKDEGGSSGRSAAKLWGLVVCHHTAPRAVPFPL 200

Query: 382 RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
           R ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IV QSPSIMDLV
Sbjct: 201 RSACEFLMQTFSLQINMEMQLAAQLTENNILRTQTLLCDMLLRDAPIGIVIQSPSIMDLV 260

Query: 442 KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
           KCDGAALYYGG+ WL+GVTPT +Q+KDIA WLL   GD TGLSTDSLA+AGYPGAA LG 
Sbjct: 261 KCDGAALYYGGKFWLLGVTPTGAQIKDIADWLLEYQGDSTGLSTDSLADAGYPGAASLGD 320

Query: 502 AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
           AVCGMA ARITSKDFLFWFRSHTA E+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK 
Sbjct: 321 AVCGMAAARITSKDFLFWFRSHTANEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKR 380

Query: 562 RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMV 621
           RS PWE  E++AIHSLQ+++R SFQ++ +++++K   + + +  K+QG+DELSSVACEMV
Sbjct: 381 RSLPWENVEMDAIHSLQLILRGSFQDI-DDSENKTMVHARMSDLKLQGMDELSSVACEMV 439

Query: 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLIC 681
           RLIETA API  VDS+G +NGWN+  AELTGLPA EAMGKS + ++V EES   VE ++ 
Sbjct: 440 RLIETAHAPILAVDSAGIVNGWNSYAAELTGLPAEEAMGKSFVHDLVFEESIETVEKMLY 499

Query: 682 RALLGEEDKNVELKLRKFELQKQHSVVYIL 711
            AL GEEDKNVE+KLR F L+ Q  V+ ++
Sbjct: 500 NALRGEEDKNVEIKLRTFGLEMQKEVILVV 529


>gi|406685365|gb|AFS51123.1| phytochrome P, partial [Fokienia hodginsii]
          Length = 530

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/512 (69%), Positives = 425/512 (83%), Gaps = 11/512 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+DDHGEVV+EIR
Sbjct: 19  VPSQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDDHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF +NRVRMICDC A PV +IQ++EL QPLCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMKNRVRMICDCRATPVKIIQAEELDQPLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPF 379
           R+PHGCH QYM NMGSIASL MAVI+N           + + KLWGLVVCHHTSPR +PF
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNGIGNDEGGSSGRSAGKLWGLVVCHHTSPRAVPF 198

Query: 380 PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
           PLR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVT+SPSIMD
Sbjct: 199 PLRSACEFLMQTFSLQINMEMQLAAQLTENNILRTQTLLCDMLLRDAPIGIVTRSPSIMD 258

Query: 440 LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
           LVKCDGAALYYGG+ WL+ VTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA L
Sbjct: 259 LVKCDGAALYYGGKFWLLEVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASL 318

Query: 500 GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
           G AVCGMA ARITSKDFLFWFRSHTA E+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVV
Sbjct: 319 GDAVCGMAAARITSKDFLFWFRSHTANEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVV 378

Query: 560 KNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACE 619
           K RS PWE  E++AIHSLQ+++R SFQ++ +++++K   + + +  ++QG+DELSSVACE
Sbjct: 379 KRRSLPWENVEMDAIHSLQLILRGSFQDI-DDSENKTMVHARMSDLRLQGMDELSSVACE 437

Query: 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679
           MVRLIETA API  VD++G +NGWN+  AELTGLPA EAMGKSL+ ++V +ES   VE +
Sbjct: 438 MVRLIETAHAPILAVDAAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVFDESIETVEKM 497

Query: 680 ICRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
           +  AL GEEDK+VE+KLR F  Q Q  V+ ++
Sbjct: 498 LYNALRGEEDKSVEIKLRTFGPQMQKEVILVV 529


>gi|406685411|gb|AFS51146.1| phytochrome P, partial [Taiwania cryptomerioides]
          Length = 509

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/492 (73%), Positives = 415/492 (84%), Gaps = 11/492 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQ+LAV A SRLQA+P GDIGLLCDTVVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 19  VPSQRLAVRATSRLQAVPNGDIGLLCDTVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QNRVRMICDC A PV VIQ++ELKQPLCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCRASPVRVIQAEELKQPLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPF 379
           R+PHGCH QYM NMGSIASLVMAVI+N           + S+KLWGLVVCHHTSPR + F
Sbjct: 139 RAPHGCHAQYMANMGSIASLVMAVIVNGNGNDEEGGSGRSSVKLWGLVVCHHTSPRAVSF 198

Query: 380 PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
           PLR ACEFL+Q F  Q+ MELQ+A QL E NILRTQ LLCDMLLRDAP  I TQSPSIMD
Sbjct: 199 PLRSACEFLMQTFGPQINMELQLAAQLTENNILRTQTLLCDMLLRDAPIGIATQSPSIMD 258

Query: 440 LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
           LVKCDGAALYYGG+ WL+GVTPTE+Q+KDIA WLL  H D TGLSTDSLA+AGYPGAA L
Sbjct: 259 LVKCDGAALYYGGKFWLLGVTPTEAQIKDIADWLLEYHVDSTGLSTDSLADAGYPGAASL 318

Query: 500 GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
           G AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVV
Sbjct: 319 GDAVCGMAAARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVV 378

Query: 560 KNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACE 619
           K RS PWE  E++AIHSLQ+++R SFQ++ +++D+K   +++ N  K+QG+DELSSVA E
Sbjct: 379 KRRSLPWENVEMDAIHSLQLILRGSFQDI-DDSDTKTMVHSRLNDLKLQGIDELSSVASE 437

Query: 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679
           MVRLIETATAPI  +DS+G +NGWNAKVAELTGLP  EAMGKSL+ ++V EES   VE +
Sbjct: 438 MVRLIETATAPILAIDSAGIVNGWNAKVAELTGLPVGEAMGKSLVHDLVFEESMETVEKM 497

Query: 680 ICRALLGEEDKN 691
           +  AL GEEDKN
Sbjct: 498 LYHALRGEEDKN 509


>gi|406685319|gb|AFS51100.1| phytochrome P, partial [Hesperocyparis bakeri]
 gi|406685323|gb|AFS51102.1| phytochrome P, partial [Hesperocyparis goveniana]
 gi|406685327|gb|AFS51104.1| phytochrome P, partial [Hesperocyparis macrocarpa]
          Length = 528

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/514 (69%), Positives = 426/514 (82%), Gaps = 11/514 (2%)

Query: 207 AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
            GAV SQKLAV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEV++
Sbjct: 16  GGAVPSQKLAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVLA 75

Query: 267 EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
           EIRRSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV 
Sbjct: 76  EIRRSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQRLCLVG 135

Query: 327 STLRSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYI 377
           STLR+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +
Sbjct: 136 STLRAPHGCHAQYMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAV 195

Query: 378 PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
           PFPLR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSI
Sbjct: 196 PFPLRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSI 255

Query: 438 MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
           MDLVKCDGAALYYGG+ WL+G+TPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA
Sbjct: 256 MDLVKCDGAALYYGGKFWLIGITPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAA 315

Query: 498 LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
            LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G KMHPRSSFKAFLE
Sbjct: 316 FLGDAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRKMHPRSSFKAFLE 375

Query: 558 VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVA 617
           VVK RS PW+  E++AIHSLQ+++R SF+++ +++++K   + Q N  K+QG DEL+S A
Sbjct: 376 VVKRRSLPWDNVEMDAIHSLQLILRGSFKDI-DDSENKTMVHAQMNDLKLQG-DELNSAA 433

Query: 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
           CEMVR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V 
Sbjct: 434 CEMVRVIETAHAPILGVDSTGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVA 493

Query: 678 NLICRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
            ++  AL GEEDKNVE+KLR F  Q Q  ++ ++
Sbjct: 494 KMLYNALRGEEDKNVEIKLRTFGSQMQKEIILVV 527


>gi|406685347|gb|AFS51114.1| phytochrome P, partial [Hesperocyparis arizonica]
          Length = 528

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/514 (69%), Positives = 425/514 (82%), Gaps = 11/514 (2%)

Query: 207 AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
            GAV SQKLAV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEV++
Sbjct: 16  GGAVPSQKLAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVLA 75

Query: 267 EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
           EIRRSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV 
Sbjct: 76  EIRRSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQRLCLVG 135

Query: 327 STLRSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYI 377
           STLR+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +
Sbjct: 136 STLRAPHGCHAQYMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAV 195

Query: 378 PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
           PFPLR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSI
Sbjct: 196 PFPLRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSI 255

Query: 438 MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
           MDLVKCDGAALYYGG+ WL+G+TPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA
Sbjct: 256 MDLVKCDGAALYYGGKFWLIGITPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAA 315

Query: 498 LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
            LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G KMHPRSSFKAFLE
Sbjct: 316 FLGDAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRKMHPRSSFKAFLE 375

Query: 558 VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVA 617
           VVK RS PW+  E+ AIHSLQ+++R SF+++ +++++K   + Q N  K+QG DEL+S A
Sbjct: 376 VVKRRSLPWDNVEMGAIHSLQLILRGSFKDI-DDSENKTMVHAQMNDLKLQG-DELNSAA 433

Query: 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
           CEMVR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V 
Sbjct: 434 CEMVRVIETAHAPILGVDSTGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVA 493

Query: 678 NLICRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
            ++  AL GEEDKNVE+KLR F  Q Q  ++ ++
Sbjct: 494 KMLYNALRGEEDKNVEIKLRTFGSQMQKEIILVV 527


>gi|406685339|gb|AFS51110.1| phytochrome P, partial [Chamaecyparis obtusa]
          Length = 530

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/512 (69%), Positives = 424/512 (82%), Gaps = 11/512 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y F +DDHGEVV+EIR
Sbjct: 19  VPSQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFREDDHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF +NRVRMICDC A PV +IQ++EL QPLCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMKNRVRMICDCRAPPVRIIQAEELDQPLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPF 379
           R+PHGCH QYM NMGSIASL MAVI+N           + + KLWGLVVCHHTSPR +PF
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNGIGNDEGGSSGRSAGKLWGLVVCHHTSPRAVPF 198

Query: 380 PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
           PLR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVT+SPSIMD
Sbjct: 199 PLRSACEFLMQTFSLQINMEMQLAAQLTENNILRTQTLLCDMLLRDAPIGIVTRSPSIMD 258

Query: 440 LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
           LVKCDGAALYYGG+ WL+ VTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA L
Sbjct: 259 LVKCDGAALYYGGKFWLLEVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASL 318

Query: 500 GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
           G AVCGMA ARITSKDFLFWFRSHT KE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVV
Sbjct: 319 GDAVCGMAAARITSKDFLFWFRSHTGKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVV 378

Query: 560 KNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACE 619
           K RS PWE  E++AIHSLQ+++R SFQ++ +++++K   + + +  ++QG+DELSSVACE
Sbjct: 379 KRRSLPWENVEMDAIHSLQLILRGSFQDI-DDSENKTMVHARMSDLRLQGMDELSSVACE 437

Query: 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679
           MVRLIETA API  VD++G +NGWN+  AELTGLPA EAMGKSL+ ++V +ES   VE +
Sbjct: 438 MVRLIETAHAPILAVDAAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVFDESIETVEKM 497

Query: 680 ICRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
           +  AL GEEDK+VE+KLR F  Q Q  V+ ++
Sbjct: 498 LYNALRGEEDKSVEIKLRTFGPQMQKEVILVV 529


>gi|406685321|gb|AFS51101.1| phytochrome P, partial [Hesperocyparis benthamii]
          Length = 528

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/514 (69%), Positives = 426/514 (82%), Gaps = 11/514 (2%)

Query: 207 AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
            GA+ SQKLAV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEV++
Sbjct: 16  GGALPSQKLAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVLA 75

Query: 267 EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
           EIRRSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV 
Sbjct: 76  EIRRSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQRLCLVG 135

Query: 327 STLRSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYI 377
           STLR+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +
Sbjct: 136 STLRAPHGCHAQYMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAV 195

Query: 378 PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
           PFPLR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSI
Sbjct: 196 PFPLRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSI 255

Query: 438 MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
           MDLVKCDGAALYYGG+ WL+G+TPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA
Sbjct: 256 MDLVKCDGAALYYGGKFWLIGITPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAA 315

Query: 498 LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
            LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G KMHPRSSFKAFLE
Sbjct: 316 FLGDAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRKMHPRSSFKAFLE 375

Query: 558 VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVA 617
           VVK RS PW+  E++AIHSLQ+++R SF+++ +++++K   + Q N  K+QG DEL+S A
Sbjct: 376 VVKRRSLPWDNVEMDAIHSLQLILRGSFKDI-DDSENKTMVHAQMNDLKLQG-DELNSAA 433

Query: 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
           CEMVR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V 
Sbjct: 434 CEMVRVIETAHAPILGVDSTGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVA 493

Query: 678 NLICRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
            ++  AL GEEDKNVE+KLR F  Q Q  ++ ++
Sbjct: 494 KMLYNALRGEEDKNVEIKLRTFGSQMQKEIILVV 527


>gi|406685325|gb|AFS51103.1| phytochrome P, partial [Hesperocyparis lusitanica]
          Length = 528

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/514 (69%), Positives = 425/514 (82%), Gaps = 11/514 (2%)

Query: 207 AGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS 266
            GAV SQKLAV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEV++
Sbjct: 16  GGAVPSQKLAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVLA 75

Query: 267 EIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVN 326
           EIRRSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV 
Sbjct: 76  EIRRSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQRLCLVG 135

Query: 327 STLRSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYI 377
           STLR+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +
Sbjct: 136 STLRAPHGCHAQYMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAV 195

Query: 378 PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
           PFPLR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCD LLRDAP  IVTQSPSI
Sbjct: 196 PFPLRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDTLLRDAPIGIVTQSPSI 255

Query: 438 MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAA 497
           MDLVKCDGAALYYGG+ WL+G+TPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA
Sbjct: 256 MDLVKCDGAALYYGGKFWLIGITPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAA 315

Query: 498 LLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLE 557
            LG AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G KMHPRSSFKAFLE
Sbjct: 316 FLGDAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRKMHPRSSFKAFLE 375

Query: 558 VVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVA 617
           VVK RS PW+  E++AIHSLQ+++R SF+++ +++++K   + Q N  K+QG DEL+S A
Sbjct: 376 VVKRRSLPWDNVEMDAIHSLQLILRGSFKDI-DDSENKTMVHAQMNDLKLQG-DELNSAA 433

Query: 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVE 677
           CEMVR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V 
Sbjct: 434 CEMVRVIETAHAPILGVDSTGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVA 493

Query: 678 NLICRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
            ++  AL GEEDKNVE+KLR F  Q Q  ++ ++
Sbjct: 494 KMLYNALRGEEDKNVEIKLRTFGSQMQKEIILVV 527


>gi|406685337|gb|AFS51109.1| phytochrome P, partial [Chamaecyparis lawsoniana]
          Length = 530

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/512 (69%), Positives = 423/512 (82%), Gaps = 11/512 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+DDHGEVV+EIR
Sbjct: 19  VPSQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDDHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF +NRVRMICDC A PV +IQ++EL QPLCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMKNRVRMICDCRAPPVRIIQAEELDQPLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPF 379
           R+PHG H QYM NMGSIASL MAVI+N           + + KLWGLVVCHHTSPR +PF
Sbjct: 139 RAPHGYHAQYMANMGSIASLAMAVIVNGIGNDEGGSSGRSAGKLWGLVVCHHTSPRAVPF 198

Query: 380 PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
           PLR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVT+SPSIMD
Sbjct: 199 PLRSACEFLMQTFSLQINMEMQLAAQLTENNILRTQTLLCDMLLRDAPIGIVTRSPSIMD 258

Query: 440 LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
           LVKCDGAALYYGG+ WL+ VTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA L
Sbjct: 259 LVKCDGAALYYGGKFWLLEVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASL 318

Query: 500 GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
           G AVCGMA ARITSKDFLFWFRSHTA E+KWGGAKHHP+ KD+G +MHPRSSF AFLEVV
Sbjct: 319 GDAVCGMAAARITSKDFLFWFRSHTANEIKWGGAKHHPDDKDDGRRMHPRSSFXAFLEVV 378

Query: 560 KNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACE 619
           K RS PWE  E++AIHSLQ+++R SFQ++ +++++K   + + +  ++QG+DELSSVACE
Sbjct: 379 KRRSLPWENVEMDAIHSLQLILRGSFQDI-DDSENKTMVHARMSDLRLQGMDELSSVACE 437

Query: 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679
           MVRLIETA API  VD++G +NGWN+  AELTGLPA EAMGKSL+ ++V +ES   VE +
Sbjct: 438 MVRLIETAHAPILAVDAAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVFDESIETVEKM 497

Query: 680 ICRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
           +  AL GEEDK+VE+KLR F  Q Q  V+ ++
Sbjct: 498 LYNALRGEEDKSVEIKLRTFGPQMQKEVILVV 529


>gi|406685335|gb|AFS51108.1| phytochrome P, partial [Calocedrus macrolepis]
          Length = 529

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/510 (70%), Positives = 421/510 (82%), Gaps = 12/510 (2%)

Query: 212 SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
           SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRRS
Sbjct: 21  SQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIRRS 80

Query: 272 DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
           DLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC   PV +IQ+ EL Q LCLV STLR+
Sbjct: 81  DLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRDAPVSIIQADELPQRLCLVGSTLRA 140

Query: 332 PHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPFPL 381
           PHGCH QYM NMGSIASL MAVI+N           +++ KLWGLVVCHHTSPR +PFPL
Sbjct: 141 PHGCHAQYMANMGSIASLAMAVIVNGNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFPL 200

Query: 382 RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
           R ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDLV
Sbjct: 201 RSACEFLMQTFSLQINMEMQLAAQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDLV 260

Query: 442 KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
           KCDGAALYYGG+ WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG 
Sbjct: 261 KCDGAALYYGGKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLGD 320

Query: 502 AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
           AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK 
Sbjct: 321 AVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKR 380

Query: 562 RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMV 621
           RS PW+  E++AIHSLQ+++R SF+++ +++++K   + Q N  K+QG DEL+S ACEMV
Sbjct: 381 RSLPWDNVEMDAIHSLQLILRGSFKDI-DDSENKTMVHAQMNDLKLQG-DELNSAACEMV 438

Query: 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLIC 681
           R+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++ 
Sbjct: 439 RVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVAKMLY 498

Query: 682 RALLGEEDKNVELKLRKFELQKQHSVVYIL 711
            AL GEEDKNVE+KLR F  Q Q  V+ ++
Sbjct: 499 NALRGEEDKNVEMKLRTFGPQMQKEVILVV 528


>gi|406685355|gb|AFS51118.1| phytochrome P, partial [Callitropsis funebris]
          Length = 528

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/511 (70%), Positives = 424/511 (82%), Gaps = 11/511 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQKLAV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEV++EIR
Sbjct: 19  VPSQKLAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVLAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQRLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
           R+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 198

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDL
Sbjct: 199 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDL 258

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYGG+ WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 259 VKCDGAALYYGGKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLG 318

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 319 DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 378

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++ +++++K   + Q N  K+QG DEL+S ACEM
Sbjct: 379 RRSLPWDNVEMDAIHSLQLILRGSFKDI-DDSENKTVVHAQMNDLKLQG-DELNSAACEM 436

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++
Sbjct: 437 VRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESVETVAKML 496

Query: 681 CRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
             AL GEEDKNVE+KLR F  Q Q  V+ ++
Sbjct: 497 YNALRGEEDKNVEIKLRTFGPQMQKEVILVV 527


>gi|406685351|gb|AFS51116.1| phytochrome P, partial [Cupressus duclouxiana]
 gi|406685359|gb|AFS51120.1| phytochrome P, partial [Cupressus torulosa]
          Length = 528

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/511 (70%), Positives = 424/511 (82%), Gaps = 11/511 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQKLAV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEV++EIR
Sbjct: 19  VPSQKLAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVLAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQRLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
           R+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 198

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDL
Sbjct: 199 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDL 258

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYGG+ WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 259 VKCDGAALYYGGKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLG 318

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 319 DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 378

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++ +++++K   + Q N  K+QG DEL+S ACEM
Sbjct: 379 RRSLPWDNVEMDAIHSLQLILRGSFKDI-DDSENKTVVHAQMNDLKLQG-DELNSAACEM 436

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++
Sbjct: 437 VRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESVETVAKML 496

Query: 681 CRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
             AL GEEDKNVE+KLR F  Q Q  V+ ++
Sbjct: 497 YNALRGEEDKNVEIKLRTFGPQMQKEVILVV 527


>gi|406685357|gb|AFS51119.1| phytochrome P, partial [Cupressus sempervirens]
          Length = 528

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/511 (70%), Positives = 423/511 (82%), Gaps = 11/511 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQKLAV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM Y FH+D+HGEV++EIR
Sbjct: 19  VPSQKLAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMAYKFHEDEHGEVLAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQRLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
           R+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 198

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDL
Sbjct: 199 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDL 258

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYGG+ WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 259 VKCDGAALYYGGKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLG 318

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 319 DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 378

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++ +++++K   + Q N  K+QG DEL+S ACEM
Sbjct: 379 RRSLPWDNVEMDAIHSLQLILRGSFKDI-DDSENKTVVHAQMNDLKLQG-DELNSAACEM 436

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++
Sbjct: 437 VRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESVETVAKML 496

Query: 681 CRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
             AL GEEDKNVE+KLR F  Q Q  V+ ++
Sbjct: 497 YNALRGEEDKNVEIKLRTFGPQMQKEVILVV 527


>gi|406685397|gb|AFS51139.1| phytochrome P, partial [Microbiota decussata]
          Length = 529

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/512 (69%), Positives = 425/512 (83%), Gaps = 12/512 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 19  VPSQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMICDC A PV +IQ++EL Q LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMICDCRAAPVSIIQAEELPQRLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPF 379
           R+PHGCH QYM NMGSIASL MAVI+N           +++ KLWGLVVCHHTSPR +PF
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNGNVNDEVGSSGRNTGKLWGLVVCHHTSPRAVPF 198

Query: 380 PLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMD 439
           PLR ACEFL+Q FSLQ+ ME+Q+A QL E++ILRTQ LLCDMLLRDAP  IVTQSPSIM+
Sbjct: 199 PLRSACEFLMQTFSLQINMEMQLAAQLTEQHILRTQTLLCDMLLRDAPIGIVTQSPSIMN 258

Query: 440 LVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALL 499
           LVKCDGAALYYGG+ WL+GVTPTE+Q+KDIA WLL  H D TGLSTDSLA+AGYPGAA L
Sbjct: 259 LVKCDGAALYYGGKFWLIGVTPTEAQIKDIADWLLEYHVDSTGLSTDSLADAGYPGAASL 318

Query: 500 GQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVV 559
           G AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVV
Sbjct: 319 GDAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVV 378

Query: 560 KNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACE 619
           K RS PW+  E++AIHSLQ+++R SF+++ +++++K   + Q N  K+QG DEL+S ACE
Sbjct: 379 KRRSLPWDNVEMDAIHSLQLILRGSFKDI-DDSENKTMVHAQMNDLKLQG-DELNSAACE 436

Query: 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679
           MVR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  +
Sbjct: 437 MVRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLLHDLVLEESIETVAKM 496

Query: 680 ICRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
           +  AL GEEDKNVE+KLR F  Q Q  V+ ++
Sbjct: 497 LYNALRGEEDKNVEIKLRTFGPQMQKEVILVV 528


>gi|406685375|gb|AFS51128.1| phytochrome P, partial [Juniperus drupacea]
          Length = 528

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/511 (70%), Positives = 421/511 (82%), Gaps = 11/511 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQKLAV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 19  VPSQKLAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQLLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
           R+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 198

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDL
Sbjct: 199 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDL 258

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYG + WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 259 VKCDGAALYYGDKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLG 318

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 319 DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 378

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++++  + K   + Q N  K+QG DEL+S ACEM
Sbjct: 379 RRSLPWDNVEMDAIHSLQLILRGSFKDIDDSKN-KTMVHAQMNDLKLQG-DELNSAACEM 436

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++
Sbjct: 437 VRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVAKML 496

Query: 681 CRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
             AL GEEDKNVE+KLR F  Q Q  V+ ++
Sbjct: 497 YNALRGEEDKNVEIKLRTFGPQMQKEVILVV 527


>gi|406685405|gb|AFS51143.1| phytochrome P, partial [Platycladus orientalis]
          Length = 529

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/510 (69%), Positives = 423/510 (82%), Gaps = 12/510 (2%)

Query: 212 SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
           SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRRS
Sbjct: 21  SQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIRRS 80

Query: 272 DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
           DLEPYLG+H+PA DIPQA+RFLF QN+VRMICDC A PV +IQ++EL Q LCLV STLR+
Sbjct: 81  DLEPYLGLHYPATDIPQASRFLFMQNKVRMICDCRAAPVSIIQAEELSQSLCLVGSTLRA 140

Query: 332 PHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPFPL 381
           PHGCH QYM NMGSIASL MAVI+N           +++ KLWGLVVCHHTSPR +PFPL
Sbjct: 141 PHGCHAQYMANMGSIASLAMAVIVNGNVNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFPL 200

Query: 382 RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
           R ACEFL+Q FSLQ+ ME+Q+A QL E++ILRTQ LLCDMLLRDAP  IVTQSPSIM+LV
Sbjct: 201 RSACEFLMQTFSLQINMEMQLAAQLTEQHILRTQTLLCDMLLRDAPIGIVTQSPSIMNLV 260

Query: 442 KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
           KCDGAALYYGG+ WL+GVTPTE+Q+KDIA WLL  H D TGLSTDSLA+AGYPGAA LG 
Sbjct: 261 KCDGAALYYGGKFWLIGVTPTEAQIKDIADWLLEYHVDSTGLSTDSLADAGYPGAASLGD 320

Query: 502 AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
           AVCG A ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK 
Sbjct: 321 AVCGRAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKR 380

Query: 562 RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMV 621
           RS PW+  E++AIHSLQ+++R SF+++ +++++K   + Q N  K+QG DEL+S ACEMV
Sbjct: 381 RSLPWDNVEMDAIHSLQLILRGSFKDI-DDSENKTMVHAQMNDLKLQG-DELNSAACEMV 438

Query: 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLIC 681
           R+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++ 
Sbjct: 439 RVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESFETVAKMLY 498

Query: 682 RALLGEEDKNVELKLRKFELQKQHSVVYIL 711
            AL GEEDKNVE+KLR F  Q Q  V+ ++
Sbjct: 499 NALRGEEDKNVEIKLRTFGPQTQKEVILVV 528


>gi|406685353|gb|AFS51117.1| phytochrome P, partial [Cupressus dupreziana]
          Length = 528

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/511 (69%), Positives = 423/511 (82%), Gaps = 11/511 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQKLAV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEV++EIR
Sbjct: 19  VPSQKLAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVLAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQRLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
           R+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 198

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSI+DL
Sbjct: 199 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSILDL 258

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYGG+ WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 259 VKCDGAALYYGGKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLG 318

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGM  ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 319 DAVCGMTAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 378

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++ +++++K   + Q N  K+QG DEL+S ACEM
Sbjct: 379 RRSLPWDNVEMDAIHSLQLILRGSFKDI-DDSENKTVVHAQMNDLKLQG-DELNSAACEM 436

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++
Sbjct: 437 VRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESVETVAKML 496

Query: 681 CRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
             AL GEEDKNVE+KLR F  Q Q  V+ ++
Sbjct: 497 YNALRGEEDKNVEIKLRTFGPQMQKEVILVV 527


>gi|406685387|gb|AFS51134.1| phytochrome P, partial [Juniperus virginiana]
          Length = 528

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/511 (69%), Positives = 421/511 (82%), Gaps = 11/511 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQK+AV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 19  VPSQKVAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQLLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
           R+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 198

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDL
Sbjct: 199 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDL 258

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYG + WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 259 VKCDGAALYYGDKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLG 318

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 319 DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 378

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++++  + K   + Q N  K+QG DEL+S ACEM
Sbjct: 379 RRSLPWDNVEMDAIHSLQLILRGSFKDIDDSKN-KTMVHAQMNDLKLQG-DELNSAACEM 436

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++
Sbjct: 437 VRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVAKML 496

Query: 681 CRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
             AL GEEDKNVE+KLR F  Q Q  V+ ++
Sbjct: 497 YNALRGEEDKNVEIKLRTFGPQMQKEVILVV 527


>gi|406685331|gb|AFS51106.1| phytochrome P, partial [Callitropsis vietnamensis]
          Length = 528

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/511 (69%), Positives = 422/511 (82%), Gaps = 11/511 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQKLAV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEV++EIR
Sbjct: 19  VPSQKLAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVLAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQRLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
           R+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 198

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDL
Sbjct: 199 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDL 258

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYGG+ WL+G+TPTE+Q+KDIA WLL  HGD TGLSTDS+A+AGYPGAA LG
Sbjct: 259 VKCDGAALYYGGKFWLIGITPTEAQIKDIADWLLEYHGDSTGLSTDSIADAGYPGAASLG 318

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 319 DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 378

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++++  + K   + Q N  K+QG DEL+S ACEM
Sbjct: 379 RRSLPWDNVEMDAIHSLQLILRGSFKDIDDSKN-KTMVHAQMNDLKLQG-DELNSAACEM 436

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   +  ++
Sbjct: 437 VRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETLAKML 496

Query: 681 CRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
             AL GEEDKNVE+KLR F  Q Q  ++ ++
Sbjct: 497 YNALRGEEDKNVEIKLRTFGPQMQKEIILVV 527


>gi|37779202|gb|AAO86643.1| PHYA2 photoreceptor [Stellaria longipes]
          Length = 935

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/718 (52%), Positives = 491/718 (68%), Gaps = 32/718 (4%)

Query: 38  IIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGV-----PEEQITAYLSKIQRGGL 92
           II     DA L AEFE+S      F+YS SV     GV      ++  ++YL +IQ+G  
Sbjct: 22  IIAQTIQDAKLHAEFEES---SNEFDYSSSVRGSTSGVNQLPKSDKVTSSYLLQIQKGKF 78

Query: 93  IQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRS----EDFELNGLIGIDARTLFTPPSG 148
           IQPFGC+LA+++ TFR+I +SEN  EML + S +     D  + G IG D RT+FT PS 
Sbjct: 79  IQPFGCLLALDDKTFRVIAFSENAPEMLTMVSHAVPSVGDLPVIG-IGTDIRTIFTGPSA 137

Query: 149 ASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAG 208
           ++L KA    ++SLLNPILVH   ++  KPFYAI+HR+   +VID EP K  +  ++ AG
Sbjct: 138 SALQKALGFTDVSLLNPILVHC--KNPGKPFYAIVHRVTRSLVIDFEPVKPYEVPMTAAG 195

Query: 209 AVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEI 268
           A+QS KLA  AI+RLQ+LP G++  L DT+V++V +LTGYDRVM Y FHDDDHGEVVSE+
Sbjct: 196 ALQSYKLAAKAITRLQSLPSGNMDRLVDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEV 255

Query: 269 RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNST 328
            + +L+ YLG+H+PA DIPQAARFLF +N+VR+ICDC A  V V+Q ++L   L L  ST
Sbjct: 256 TKPNLDSYLGLHYPATDIPQAARFLFMKNKVRLICDCRAKNVRVVQDEKLSVDLTLCGST 315

Query: 329 LRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------MKLWGLVVCHHTSPR 375
           LR+PHGCH QYM NM SI SLVMAV++N +D               +LWGLVVCHHTSPR
Sbjct: 316 LRAPHGCHAQYMENMNSIGSLVMAVVVNDEDDEDGGSAPAQPHKRKRLWGLVVCHHTSPR 375

Query: 376 YIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSP 435
           ++PFPLRYACEFL Q F++ +  EL++  Q  EK ILRTQ LLCDML+RDAP  IVTQSP
Sbjct: 376 FVPFPLRYACEFLAQVFAIHVNKELELENQFLEKKILRTQTLLCDMLMRDAPLGIVTQSP 435

Query: 436 SIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPG 495
           +IMDLVKCDGAAL Y  + W +G+TPT+ QL++I  WL  +H D TGLSTDSL +AGYP 
Sbjct: 436 NIMDLVKCDGAALLYNNKVWRLGITPTDYQLQEIGGWLSRDHMDSTGLSTDSLYDAGYPA 495

Query: 496 AALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAF 555
           A  LG +VCGMA  RIT  D LFWFRSHTA E+KWGGAKH    KD+G KMHPRSSFKAF
Sbjct: 496 ALELGDSVCGMAAVRITVNDMLFWFRSHTAAEIKWGGAKHEAGEKDDGSKMHPRSSFKAF 555

Query: 556 LEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSS 615
           LEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +++ +  ++ G+ EL +
Sbjct: 556 LEVVKRRSVPWKDYEMDAIHSLQLILRNAFKDGEAADLNTSVIHSKISDLQISGLKELEA 615

Query: 616 VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGA 675
           V  EMVRLIETAT PIF VDS G +NGWN K+ ELTG+P  EA+GK  I  +V + S   
Sbjct: 616 VTSEMVRLIETATVPIFAVDSDGLVNGWNTKIYELTGIPVEEAVGKH-IAALVEDSSIDN 674

Query: 676 VENLICRAL-LGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQ 732
           V+ ++  AL L   D    L +++   Q       +L  A   R  KN + G+ F G+
Sbjct: 675 VKQMLQSALQLASHDLQHALHIQRLAEQAATKRANVL--AYMKRRIKNPLAGIIFSGK 730



 Score =  149 bits (377), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 195/397 (49%), Gaps = 35/397 (8%)

Query: 697  RKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQ 756
            + +E+   HS+  IL NA    +  +       +   + H K+  D  I    + EA+  
Sbjct: 567  KDYEMDAIHSLQLILRNAFKDGEAAD-------LNTSVIHSKI-SDLQISGLKELEAVTS 618

Query: 757  SVNPLIP----PIFASDENACCSEWNAAMEKVTGWMRHEVIGITGQGTENFPFGFFNRQG 812
             +  LI     PIFA D +   + WN  + ++TG    E +G                  
Sbjct: 619  EMVRLIETATVPIFAVDSDGLVNGWNTKIYELTGIPVEEAVG------------------ 660

Query: 813  QFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQE 872
            + +  AL      D   +++     +Q+   DLQ AL  Q L +     +   LAY+++ 
Sbjct: 661  KHI-AALVEDSSIDNVKQMLQSA--LQLASHDLQHALHIQRLAEQAATKRANVLAYMKRR 717

Query: 873  VKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSE 932
            +KNPL GI F  K+L+ +++ E QR  L+TS  C+ Q+  I+D  DL  I +G  EL+  
Sbjct: 718  IKNPLAGIIFSGKILDGTNVDEKQRLVLQTSARCQGQLNKILDDSDLDSIIDGYCELEMV 777

Query: 933  EFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRH 992
            EF + +IL A +SQVM    +K + + ++  E     +L GD +RLQ +L+DFL   V  
Sbjct: 778  EFAVQDILVASISQVMAKSSEKGIQMSNNCTEHGFKETLYGDSLRLQQILADFLSISVNF 837

Query: 993  APSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGL 1052
              SP G + + V      I ++ Q  +++FR+TH G GI   L+ +M+  R    + +G+
Sbjct: 838  T-SPGGHIGVTVRLTKDKIGESVQLANLEFRITHTGGGISEELLSEMFESRGN-ASEDGI 895

Query: 1053 GLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTRG 1089
             L +SRKL+ +MNG ++Y+R      F+I +EL   G
Sbjct: 896  SLLISRKLVKLMNGDIQYLRSAGTSTFIISVELAVAG 932


>gi|406685373|gb|AFS51127.1| phytochrome P, partial [Juniperus communis]
          Length = 528

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/511 (69%), Positives = 421/511 (82%), Gaps = 11/511 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQKLAV A SRLQA+  GDIGLLCD+VVE+V++LTGYDRVM+Y FH+D+ GEVV+EIR
Sbjct: 19  VPSQKLAVRATSRLQAVANGDIGLLCDSVVEEVRELTGYDRVMVYKFHEDERGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQLLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
           R+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 198

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDL
Sbjct: 199 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDL 258

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYG + WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 259 VKCDGAALYYGDKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLG 318

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 319 DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 378

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++++  + K   + Q N  K+QG DEL+S ACEM
Sbjct: 379 RRSLPWDNVEMDAIHSLQLILRGSFKDIDDSKN-KTMVHAQMNDLKLQG-DELNSAACEM 436

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++
Sbjct: 437 VRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVAKML 496

Query: 681 CRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
             AL GEEDKNVE+KLR F  Q Q  V+ ++
Sbjct: 497 YNALRGEEDKNVEIKLRTFGPQMQKEVILVV 527


>gi|406685329|gb|AFS51105.1| phytochrome P, partial [Callitropsis nootkatensis]
          Length = 528

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/511 (69%), Positives = 423/511 (82%), Gaps = 11/511 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQKLAV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEV++EIR
Sbjct: 19  VPSQKLAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVLAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQRLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
           R+PHGCH Q M NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 139 RAPHGCHAQCMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 198

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDL
Sbjct: 199 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDL 258

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYGG+ WL+G+TPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 259 VKCDGAALYYGGKFWLIGITPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLG 318

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 319 DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 378

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++ +++++K   + Q N  K+QG DEL+S ACEM
Sbjct: 379 RRSLPWDNVEMDAIHSLQLILRGSFKDI-DDSENKTMVHAQMNDLKLQG-DELNSAACEM 436

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++
Sbjct: 437 VRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVAKML 496

Query: 681 CRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
             AL GEEDKNVE+KLR F  Q Q  ++ ++
Sbjct: 497 YNALRGEEDKNVEIKLRTFGPQMQKEIILVV 527


>gi|406685369|gb|AFS51125.1| phytochrome P, partial [Juniperus ashei]
 gi|406685371|gb|AFS51126.1| phytochrome P, partial [Juniperus coahuilensis]
          Length = 528

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/511 (69%), Positives = 421/511 (82%), Gaps = 11/511 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQK+AV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 19  VPSQKVAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL + LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPRLLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
           R+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 198

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDL
Sbjct: 199 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDL 258

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYG + WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 259 VKCDGAALYYGDKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLG 318

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 319 DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 378

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++++  + K   + Q N  K+QG DEL+S ACEM
Sbjct: 379 RRSLPWDNVEMDAIHSLQLILRGSFKDIDDSKN-KTMVHAQMNDLKLQG-DELNSAACEM 436

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++
Sbjct: 437 VRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVAKML 496

Query: 681 CRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
             AL GEEDKNVE+KLR F  Q Q  V+ ++
Sbjct: 497 YNALRGEEDKNVEIKLRTFGPQMQKEVILVV 527


>gi|406685379|gb|AFS51130.1| phytochrome P, partial [Juniperus phoenicea]
          Length = 528

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/511 (69%), Positives = 420/511 (82%), Gaps = 11/511 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQKLAV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 19  VPSQKLAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+R LF QN+VRMI DC A PV +IQ++EL Q LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRLLFMQNKVRMISDCRADPVRIIQAEELPQLLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
           R+PHGCH QYM NMGSIASL MA+I+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 139 RAPHGCHAQYMDNMGSIASLAMAIIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 198

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDL
Sbjct: 199 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDL 258

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYG + WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 259 VKCDGAALYYGDKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLG 318

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 319 DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 378

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++++  + K   + Q N  K+QG DEL+S ACEM
Sbjct: 379 RRSLPWDNVEMDAIHSLQLILRGSFKDIDDSKN-KTMVHAQMNDLKLQG-DELNSAACEM 436

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++
Sbjct: 437 VRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVAKML 496

Query: 681 CRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
             AL GEEDKNVE+KLR F  Q Q  V+ ++
Sbjct: 497 YNALRGEEDKNVEIKLRTFGPQMQKEVILVV 527


>gi|406685385|gb|AFS51133.1| phytochrome P, partial [Juniperus tibetica]
          Length = 528

 Score =  747 bits (1928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/511 (69%), Positives = 420/511 (82%), Gaps = 11/511 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQK+AV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 19  VPSQKVAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQLLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
           R+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNNGKDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 198

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDL
Sbjct: 199 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDL 258

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYG + WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 259 VKCDGAALYYGDKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLG 318

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKA LEVVK
Sbjct: 319 DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKASLEVVK 378

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++++  + K   + Q N  K+QG DEL+S ACEM
Sbjct: 379 RRSLPWDNVEMDAIHSLQLILRGSFKDIDDSKN-KTMVHAQMNDLKLQG-DELNSAACEM 436

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++
Sbjct: 437 VRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVAKML 496

Query: 681 CRALLGEEDKNVELKLRKFELQKQHSVVYIL 711
             AL GEEDKNVE+KLR F  Q Q  V+ I+
Sbjct: 497 YNALRGEEDKNVEIKLRTFGPQMQKEVILIV 527


>gi|406685333|gb|AFS51107.1| phytochrome P, partial [Calocedrus decurrens]
          Length = 529

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/510 (69%), Positives = 420/510 (82%), Gaps = 12/510 (2%)

Query: 212 SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
           SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRRS
Sbjct: 21  SQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIRRS 80

Query: 272 DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
           DLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC   PV +IQ+ EL Q LCLV STLR+
Sbjct: 81  DLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRDAPVGIIQADELPQRLCLVGSTLRA 140

Query: 332 PHGCHLQYMTNMGSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPFPL 381
           PHGCH QYM NMGSIASL MAVI+N           +++ KLWGLVVCHHTSPR +PFPL
Sbjct: 141 PHGCHAQYMANMGSIASLAMAVIVNGNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFPL 200

Query: 382 RYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLV 441
           R ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLR+AP  IVTQSPSIMDLV
Sbjct: 201 RSACEFLMQTFSLQINMEMQLAAQLTENNILRTQTLLCDMLLREAPIGIVTQSPSIMDLV 260

Query: 442 KCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQ 501
           KCDGAALYYGG+ WL+ VTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG 
Sbjct: 261 KCDGAALYYGGKFWLIRVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLGD 320

Query: 502 AVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKN 561
           AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK 
Sbjct: 321 AVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKR 380

Query: 562 RSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMV 621
           RS PW+  E++AIHSLQ+++R SF+++ +++++K   + Q N  K+QG DEL+S ACEMV
Sbjct: 381 RSLPWDNVEMDAIHSLQLILRGSFKDI-DDSENKTMVHAQMNDLKLQG-DELNSAACEMV 438

Query: 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLIC 681
           R+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++ 
Sbjct: 439 RVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVAKMLY 498

Query: 682 RALLGEEDKNVELKLRKFELQKQHSVVYIL 711
            AL GEEDKNVE+KLR F  Q Q  V+ ++
Sbjct: 499 NALGGEEDKNVEMKLRTFGPQMQKEVILVV 528


>gi|406685343|gb|AFS51112.1| phytochrome P, partial [Cunninghamia lanceolata var. konishii]
          Length = 477

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/478 (74%), Positives = 403/478 (84%), Gaps = 11/478 (2%)

Query: 224 QALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPA 283
           QA+P GDIGLLCDTV E+V++LTGYDRVM+Y FH+D+HGEVV+EIRRSDLEPYLG+H+PA
Sbjct: 1   QAVPNGDIGLLCDTVAEEVRELTGYDRVMVYKFHEDEHGEVVAEIRRSDLEPYLGLHYPA 60

Query: 284 NDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNM 343
            DIPQA+RFLF QNRVRMICDC A PV VIQS ELKQPLCLV STLR+PHGCH QYM NM
Sbjct: 61  TDIPQASRFLFMQNRVRMICDCRATPVSVIQSVELKQPLCLVGSTLRAPHGCHAQYMANM 120

Query: 344 GSIASLVMAVIINS----------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFS 393
           GSIASLVMAVI+N           + S+KLWGLVVCHHTSPR +PFPLR ACEFL+Q F 
Sbjct: 121 GSIASLVMAVIVNGNGNDEEGGSGRSSVKLWGLVVCHHTSPRAVPFPLRSACEFLMQTFG 180

Query: 394 LQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGR 453
           LQ+ MELQ+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYGGR
Sbjct: 181 LQINMELQLAAQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYGGR 240

Query: 454 CWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITS 513
            WL+GVTPTE+Q+KDIA WLL  H D TGLSTDSLA+AGYPGAA LG AVCGMA ARITS
Sbjct: 241 FWLLGVTPTEAQIKDIADWLLEYHVDSTGLSTDSLADAGYPGAASLGDAVCGMAAARITS 300

Query: 514 KDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINA 573
           KDFLFWFRSHTAKE+KWGGAKHHP+ KD+  +MHPRSSFKAFLEVVK RS PWE  E++A
Sbjct: 301 KDFLFWFRSHTAKEMKWGGAKHHPDDKDDARRMHPRSSFKAFLEVVKRRSLPWENVEMDA 360

Query: 574 IHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFG 633
           IHSLQ+++R SFQ++ +++D+K   +++ N  K+QG+DELSSVA EMVRLIETATAPI  
Sbjct: 361 IHSLQLILRGSFQDI-DDSDTKTMVHSRLNDLKLQGIDELSSVASEMVRLIETATAPILA 419

Query: 634 VDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKN 691
           VDSSG +NGWNAKVAELTGLP  EAMGKSL+ ++V EES   V  ++  AL GEEDKN
Sbjct: 420 VDSSGIVNGWNAKVAELTGLPVGEAMGKSLVHDLVFEESMETVGKMLYHALRGEEDKN 477


>gi|89331077|emb|CAJ80905.1| phytochrome A [Chelone obliqua]
          Length = 615

 Score =  745 bits (1923), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/613 (56%), Positives = 453/613 (73%), Gaps = 12/613 (1%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCD
Sbjct: 3   KPFYAIIHRVTGSLIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++  +LTGYDRVM+Y FHDDDHGEV SE+ +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEAFELTGYDRVMIYKFHDDDHGEVFSEVTKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V V+Q ++L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRAKHVKVVQDEKLSFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKDS-----------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQ 405
             D             +LWGLVVCH+TSPR+IPFPLRYACEFL Q F++ +  EL++  Q
Sbjct: 183 EGDEDGSESVHPQKRKRLWGLVVCHNTSPRFIPFPLRYACEFLAQVFAIHVNKELELENQ 242

Query: 406 LAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQ 465
           + EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDGAAL Y  + + +G+TPT+ Q
Sbjct: 243 MLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGAALMYKNKKYKMGLTPTDFQ 302

Query: 466 LKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTA 525
           ++DI  WL   H D TGLSTDSL +AG+PGA  LG A+CGMA  +I+ +D+LFWFRSHTA
Sbjct: 303 IRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAICGMAAVKISERDWLFWFRSHTA 362

Query: 526 KEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSF 585
            E++WGGAKH    KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F
Sbjct: 363 AEIRWGGAKHEQGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAF 422

Query: 586 QEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
           ++ E  +      +T+    ++ G+ EL +V  EMVRLIETA+ PI  VD  G +NGWN+
Sbjct: 423 KDGENADSDTKAIHTRLTDLRIDGMQELEAVTSEMVRLIETASVPILAVDVDGHVNGWNS 482

Query: 646 KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
           K+A+LTGLP  EA+GK  + E+V + S   V  ++  AL G+E++NV+ +++    +   
Sbjct: 483 KIADLTGLPVDEAIGKQFL-ELVEDSSTDTVSKMLKLALEGKEEQNVQFEVKTHGERSDS 541

Query: 706 SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
             V ++VNAC S+D + NV GVCF+ QDIT  K +MDKF R++GDY+AI+Q+ NPLIPPI
Sbjct: 542 GPVTLVVNACASKDVEENVVGVCFIAQDITAHKNMMDKFTRIEGDYKAIVQNPNPLIPPI 601

Query: 766 FASDENACCSEWN 778
           F +DE   CSEWN
Sbjct: 602 FGTDEFGWCSEWN 614


>gi|363547897|gb|AEW26988.1| phytochrome P [Cryptomeria japonica]
          Length = 484

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/475 (74%), Positives = 407/475 (85%), Gaps = 3/475 (0%)

Query: 212 SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS 271
           SQ+LAV A SRLQA+P GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIRRS
Sbjct: 13  SQRLAVRATSRLQAVPNGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIRRS 72

Query: 272 DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRS 331
           DLEPYLG+H+PA DIPQA+RFLF QNRVR+ICDC A PV VIQ +ELKQPLCLV STLR+
Sbjct: 73  DLEPYLGLHYPATDIPQASRFLFMQNRVRVICDCRANPVGVIQVEELKQPLCLVGSTLRA 132

Query: 332 PHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQA 391
           PHGCH QYM NMGSIASLVMAVI+N   ++KLWGLVVCHHTSPR +PFPLR ACEFL+Q 
Sbjct: 133 PHGCHAQYMANMGSIASLVMAVIVNG--NVKLWGLVVCHHTSPRAVPFPLRSACEFLMQT 190

Query: 392 FSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYG 451
           F LQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDLVKCDGAALYYG
Sbjct: 191 FGLQINMEMQLAAQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDLVKCDGAALYYG 250

Query: 452 GRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARI 511
           G+ WL+GVTPT +Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG AVCGMA ARI
Sbjct: 251 GKFWLLGVTPTGAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAAARI 310

Query: 512 TSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEI 571
           TSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK RS PWE  E+
Sbjct: 311 TSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVKRRSLPWENVEM 370

Query: 572 NAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPI 631
           +AIHSLQ+++R SFQ++ +++++K   + Q +  K+QG+DELSSVA EMVRLIETATAPI
Sbjct: 371 DAIHSLQLILRGSFQDI-DDSETKTMVHVQLHDLKLQGIDELSSVANEMVRLIETATAPI 429

Query: 632 FGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686
             VDS+G +NGWNAK AELTGLP  EAMGKSL+ ++V EES   VE ++  AL G
Sbjct: 430 LAVDSAGIVNGWNAKAAELTGLPVGEAMGKSLVHDLVFEESMETVEKMLYHALRG 484


>gi|373842328|gb|AEY77153.1| phytochrome B, partial [Brassica juncea]
          Length = 514

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/514 (67%), Positives = 411/514 (79%), Gaps = 13/514 (2%)

Query: 282 PANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMT 341
           PA DIPQA+RFLFKQNRVRMI DCHA PV+V+Q   L Q +CLV STLR+PHGCH QYM 
Sbjct: 1   PATDIPQASRFLFKQNRVRMIVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMA 60

Query: 342 NMGSIASLVMAVIINS-----------KDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQ 390
           NMGSIASL MAVIIN            + SM+LWGLVVCHHTS R IPFPLRYACEFL+Q
Sbjct: 61  NMGSIASLTMAVIINGNEDDGSNVAGGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQ 120

Query: 391 AFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYY 450
           AF LQL MELQ+A+Q++EK +LRTQ LLCDMLLRD+P  IVTQSPSIMDLVKCDGAA  Y
Sbjct: 121 AFGLQLNMELQLALQMSEKRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLY 180

Query: 451 GGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATAR 510
            G  + +GV PTE+Q+KD+  WLL NH D TGLSTDSL +AGYPGAA LG AVCGMA A 
Sbjct: 181 HGNYYPLGVAPTEAQIKDVVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAY 240

Query: 511 ITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSE 570
           IT +DFLFWFRSHTAKE+KWGGAKHHPE KD+G +MHPRSSFKAFLEVVK+RS PWE +E
Sbjct: 241 ITKRDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPWETAE 300

Query: 571 INAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKM--QGVDELSSVACEMVRLIETAT 628
           ++AIHSLQ+++RDSF+E E   +SK      Q  S    QG+DEL +VA EMVRLIETAT
Sbjct: 301 MDAIHSLQLILRDSFKESEAAMNSKTADGAVQPYSMAGEQGIDELGAVAREMVRLIETAT 360

Query: 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEE 688
            PIF VD  G INGWNAK+AELTGL   EAMGKSL+ +++++E++  V+ LI RAL G+E
Sbjct: 361 VPIFAVDVGGCINGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEETVDKLISRALRGDE 420

Query: 689 DKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQ 748
           DKNVE+KL+ F  + Q   V+++VNAC+S+DY NN+ GVCFVGQD+T +K++MDKFI +Q
Sbjct: 421 DKNVEIKLKTFSPELQGKAVFVVVNACSSKDYSNNIVGVCFVGQDVTGQKIVMDKFINIQ 480

Query: 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAME 782
           GDY+AI+ S NPLIPPIFA+DEN CC EWN A+E
Sbjct: 481 GDYKAIVHSPNPLIPPIFAADENTCCLEWNTALE 514


>gi|89331107|emb|CAJ80920.1| phytochrome A [Glechoma hederacea]
          Length = 607

 Score =  740 bits (1911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/605 (57%), Positives = 453/605 (74%), Gaps = 12/605 (1%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQALP G I  LCD
Sbjct: 3   KPFYAIIHRVTGSLIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQALPSGSIERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+ ++V +LTGYDRVM+Y FH+DDHGEV +EIR+  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMSQEVFELTGYDRVMIYKFHEDDHGEVFTEIRKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V V+Q + L   L L  STLR+PH CHLQYM NM SIASLVM++++N
Sbjct: 123 NKVRMICDCRANHVKVVQDENLPLELTLCGSTLRAPHSCHLQYMENMNSIASLVMSIVVN 182

Query: 357 S-----KDSM------KLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQ 405
                  DS       +LWGLVVCHHTSPR++PFPLRYACEFL Q F++ +  EL++  Q
Sbjct: 183 EGEEEGSDSTHPDKRKRLWGLVVCHHTSPRFVPFPLRYACEFLTQVFAIHVNKELELENQ 242

Query: 406 LAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQ 465
           + EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDGAAL Y  + + +G+TP + Q
Sbjct: 243 MLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKYRLGMTPGDFQ 302

Query: 466 LKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTA 525
           ++D+  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  +IT KD+LFWFRSHTA
Sbjct: 303 IRDVVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAVCGMAAVKITDKDWLFWFRSHTA 362

Query: 526 KEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSF 585
            EV+WGGAKH P+ KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R+S+
Sbjct: 363 AEVRWGGAKHEPDEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNSY 422

Query: 586 QEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
           +E E+ +      +T+ +  +++G+ EL +V  EMVRLIETA+ PI  VD  G +NGW  
Sbjct: 423 KEDEDTDTYAKAIHTRLSDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGMVNGWYT 482

Query: 646 KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
           K+A+LTGLP  +A+G   +  +V E S  AV +++  AL GEE++NV+ +++    + + 
Sbjct: 483 KIADLTGLPVDKAIGCHFL-SLVEESSADAVSSMLELALKGEEERNVQFEIKTHGERSES 541

Query: 706 SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
             + ++VNAC SRD K +V GVCF+ QDIT +K +MDKF R++GDY+AI+Q+ NPLIPPI
Sbjct: 542 GPISLVVNACASRDIKESVVGVCFIAQDITAQKSMMDKFTRIEGDYKAIVQNPNPLIPPI 601

Query: 766 FASDE 770
           F +DE
Sbjct: 602 FGTDE 606


>gi|89331027|emb|CAJ80880.1| phytochrome A [Ajuga reptans]
          Length = 608

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/606 (56%), Positives = 450/606 (74%), Gaps = 13/606 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCD
Sbjct: 3   KPFYAIIHRVTGSLIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV +E+ + DLEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVFAEVTKPDLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V V+Q + L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCKANHVKVVQDENLPLDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKDS------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAM 404
             +              +LWGLVVCH TSPR++PFPLRYACEFL Q F++ +  EL++  
Sbjct: 183 EGNEEGGSESTHPEKRKRLWGLVVCHLTSPRFVPFPLRYACEFLAQVFAIHVNKELELEN 242

Query: 405 QLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTES 464
           Q+ EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDGAAL Y  + + +G+TPT+ 
Sbjct: 243 QMMEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKYKLGLTPTDF 302

Query: 465 QLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHT 524
           Q++D+  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  +I  KD+LFWFRSHT
Sbjct: 303 QIRDVVSWLDEYHRDSTGLSTDSLYDAGFPGALALGHAVCGMAAVKINDKDWLFWFRSHT 362

Query: 525 AKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDS 584
           A E++WGGAKH P  KD+G KMHPRSSF+AFLE VK RS PW+  E++AIHSLQ+++R++
Sbjct: 363 ASEIRWGGAKHEPGEKDDGRKMHPRSSFRAFLEAVKTRSLPWKDYEMDAIHSLQLILRNA 422

Query: 585 FQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWN 644
           F+E ++++      +T+ N  ++ G+ EL +V  EMVRLIETA+ PI  VD+ G +NGWN
Sbjct: 423 FKEADDKDTDTKMIHTKLNDLQIDGIQELEAVTSEMVRLIETASVPILAVDADGLVNGWN 482

Query: 645 AKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQ 704
            K+A+LT LP  +A+G+  +D +V + S   V +++  AL G+E++NV+ +++      +
Sbjct: 483 TKIADLTSLPVDKAIGRHFLD-LVEDTSADIVSHMLQLALQGKEEQNVQFEIKTHGENSE 541

Query: 705 HSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPP 764
              V ++VNAC SRD K NV GVCF+ QDIT +K +MDKF R++GDY AIIQ+ NPLIPP
Sbjct: 542 SGPVTLIVNACASRDVKENVVGVCFIAQDITAQKSMMDKFTRIEGDYRAIIQNPNPLIPP 601

Query: 765 IFASDE 770
           IF +DE
Sbjct: 602 IFGTDE 607


>gi|89330150|emb|CAJ80987.1| phytochrome A [Strobilanthes attenuata]
          Length = 607

 Score =  736 bits (1900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/605 (56%), Positives = 447/605 (73%), Gaps = 12/605 (1%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+  G++ID EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCD
Sbjct: 3   KPFYAIIHRVTGGLIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV SE+ +  LEPY G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVFSEVTKPGLEPYSGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V V+Q ++L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVNVVQDEKLTLDLTLCGSTLRAPHSCHLQYMENMISIASLVMSVVVN 182

Query: 357 SKDS-----------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQ 405
             D             +LWGLVVCHH+SPR++PFPLRYACEFL Q F++ +  EL++  Q
Sbjct: 183 EGDEEASNSSQPEKRKRLWGLVVCHHSSPRFVPFPLRYACEFLAQVFAIHVNKELELENQ 242

Query: 406 LAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQ 465
           + EKNILRTQ LLCDML+RDAP  IV+QSP++MDLVKCDGA L Y G+ + +G++P + Q
Sbjct: 243 MLEKNILRTQTLLCDMLMRDAPLGIVSQSPNVMDLVKCDGAVLLYKGKMYRLGLSPIDFQ 302

Query: 466 LKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTA 525
            +DI  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  +IT KD+LFWFRSHTA
Sbjct: 303 TRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALSLGDAVCGMAAVKITDKDWLFWFRSHTA 362

Query: 526 KEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSF 585
            E++WGGAKH P  KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F
Sbjct: 363 AEIRWGGAKHEPSEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAF 422

Query: 586 QEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
           +E E +N      +T+ +  ++ G+ EL +V  EMVRLIETA+ PI  VD  G +NGWN 
Sbjct: 423 KEAEGDNMEANVIHTRLSDLQIDGIQELEAVTSEMVRLIETASVPILAVDVDGLVNGWNT 482

Query: 646 KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
           K+A+LTGL   +A+G+  I  +V E S   V  ++  AL G+E++NV+ +++      + 
Sbjct: 483 KIADLTGLTVDKAIGRHFIG-LVEESSADIVSKMLELALQGKEERNVQFEIKTHGPGSEA 541

Query: 706 SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
             + ++VNAC SRD K NV GVCF+ QDIT +K +MDKF +++GDY AI+Q+ NPLIPPI
Sbjct: 542 GPISLVVNACASRDVKENVVGVCFIAQDITAQKTMMDKFTKIEGDYRAIVQNPNPLIPPI 601

Query: 766 FASDE 770
           F +DE
Sbjct: 602 FGTDE 606


>gi|89330092|emb|CAJ80958.1| phytochrome A [Paulownia tomentosa]
          Length = 607

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/605 (56%), Positives = 448/605 (74%), Gaps = 12/605 (1%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   +++D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCD
Sbjct: 3   KPFYAIIHRVTGSLIVDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV +EI +  LEPY G+H+PA DIPQAARFL  +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVFTEITKPGLEPYAGLHYPATDIPQAARFLSMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V V+Q + L   L L  STLR+PH CHLQYM NM SIASLVM+ ++N
Sbjct: 123 NKVRMICDCRANHVKVVQDENLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSAVVN 182

Query: 357 SKDS-----------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQ 405
             D             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  EL++  Q
Sbjct: 183 EGDEEGSDSSHPEKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQ 242

Query: 406 LAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQ 465
           + EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDGAAL Y  + + +G+TP++ Q
Sbjct: 243 MLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGAALLYKNKKYRLGLTPSDFQ 302

Query: 466 LKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTA 525
           ++DI  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  RIT KD+LFWFRSHTA
Sbjct: 303 IRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRITDKDWLFWFRSHTA 362

Query: 526 KEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSF 585
            E++WGGAKH P  KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F
Sbjct: 363 AEIRWGGAKHEPGGKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAF 422

Query: 586 QEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
           +E E+ +      +T+ N  +++G+ EL +V  EMVRLIETA+ PI  VD  G +NGWN 
Sbjct: 423 KEAEDTDLGSKAIHTRLNDLQIEGIQELEAVTSEMVRLIETASVPILAVDVDGLVNGWNT 482

Query: 646 KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
           K+A+LTGLP  +A+G+  +  +V + S   V  ++  AL G+E++NV+ +++    + + 
Sbjct: 483 KIADLTGLPVDKAIGRHFL-ALVEDSSADTVSKMLELALQGKEERNVQFEIKTHGPRSES 541

Query: 706 SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
             + ++VNAC SRD K NV GVCF+ QDIT +K +MDKF R++GDY AI+Q+ NPLIPPI
Sbjct: 542 GPISLVVNACASRDVKENVVGVCFIAQDITAQKSMMDKFTRIEGDYRAIVQNPNPLIPPI 601

Query: 766 FASDE 770
           F +DE
Sbjct: 602 FGTDE 606


>gi|406685349|gb|AFS51115.1| phytochrome P, partial [Cupressus chengiana]
          Length = 507

 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/491 (71%), Positives = 411/491 (83%), Gaps = 11/491 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQKLAV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEV++EIR
Sbjct: 19  VPSQKLAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVLAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQRLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
           R+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 198

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDL
Sbjct: 199 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDL 258

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYGG+ WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 259 VKCDGAALYYGGKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLG 318

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 319 DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 378

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++ +++++K   + Q N  K+QG DEL+S ACEM
Sbjct: 379 RRSLPWDNVEMDAIHSLQLILRGSFKDI-DDSENKTVVHAQMNDLKLQG-DELNSAACEM 436

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++
Sbjct: 437 VRVIETAHAPILGVDSAGVVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESVETVAKML 496

Query: 681 CRALLGEEDKN 691
             AL GEEDKN
Sbjct: 497 YNALRGEEDKN 507


>gi|315377406|gb|ADU05540.1| phytochrome A [Tovaria pendula]
          Length = 598

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/599 (57%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSEI +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DCHA  V V
Sbjct: 61  TYKFHDDDHGEVVSEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHVKV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N  D             
Sbjct: 121 LQDEKLPFDLTLCGSTLRAPHSCHLQYMENMSSIASLVMAVVVNEGDEESDAPNSAQAQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELDNQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TPT+SQL DIA WL + H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKNKIWRLGITPTDSQLHDIAAWLSDYHRD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG AVCGMA  R+TSKD +FWFRSHTA E+KWGGAKH P  
Sbjct: 301 STGLSTDSLYDAGFPQALTLGDAVCGMAAVRVTSKDMIFWFRSHTAGEIKWGGAKHEPGE 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KDN  KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDNARKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETTDFNTKFLH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  +A+
Sbjct: 421 SKLNDLKIDGMKELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDKAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           G   +  +V + S   V+ ++  AL G+E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GNHFL-TLVEDSSVDRVKKMLDMALQGKEEQNVQFEIKTHGARIDAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
            + NV GVCFV QD+T +K +MDKF R++GDY+ IIQ+ NP IPPIF SDE   C+EWN
Sbjct: 540 LQENVVGVCFVAQDLTGQKNVMDKFTRIEGDYKVIIQNPNPXIPPIFGSDEFGWCTEWN 598


>gi|406685381|gb|AFS51131.1| phytochrome P, partial [Juniperus procera]
          Length = 507

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/491 (70%), Positives = 408/491 (83%), Gaps = 11/491 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQK+AV A SRLQA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 19  VPSQKVAVRATSRLQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQLLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
           R+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNNGKDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 198

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDL
Sbjct: 199 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDL 258

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYG + WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 259 VKCDGAALYYGDKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLG 318

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 319 DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 378

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++++  + K   + Q N  K+QG DEL+S ACEM
Sbjct: 379 RRSLPWDNVEMDAIHSLQLILRGSFKDIDDSKN-KTMVHAQMNDLKLQG-DELNSAACEM 436

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++
Sbjct: 437 VRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVAKML 496

Query: 681 CRALLGEEDKN 691
             AL GEEDKN
Sbjct: 497 YNALRGEEDKN 507


>gi|89330108|emb|CAJ80966.1| phytochrome A [Penstemon cobaea]
          Length = 607

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/605 (56%), Positives = 448/605 (74%), Gaps = 12/605 (1%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCD
Sbjct: 3   KPFYAIIHRVTGSLIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV SE+ +   EPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVFSEVTKPGHEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V V+Q ++L   L L  STLR+PHGCHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRAKHVKVVQDEKLSFDLTLCGSTLRAPHGCHLQYMENMSSIASLVMSVVVN 182

Query: 357 SKDS-----------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQ 405
             D             +LWGLVVCHHTSPR++PFPLRYACEFL Q F++ +  EL++  Q
Sbjct: 183 EGDEDGPDSVIPQKRKRLWGLVVCHHTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQ 242

Query: 406 LAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQ 465
           + EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDGAAL Y  + + +G+TPT+ Q
Sbjct: 243 MLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGAALMYKNKKYKMGLTPTDFQ 302

Query: 466 LKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTA 525
           ++DI  WL   H D TGLSTDSL +AGYPGA  LG AVCGMA  +I+ +D+LFWFRSHTA
Sbjct: 303 IRDIVSWLDAYHRDSTGLSTDSLYDAGYPGALALGDAVCGMAAVKISDEDWLFWFRSHTA 362

Query: 526 KEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSF 585
            E++WGGAKH    KD+G KMHPRSSFKAFLEVVK RS P++  E++AIHSLQ+++R++F
Sbjct: 363 AEIRWGGAKHEQGEKDDGRKMHPRSSFKAFLEVVKTRSLPFKDYEMDAIHSLQLILRNAF 422

Query: 586 QEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNA 645
           ++ E         +T+    ++ G+ EL +V  EMVRLIETA+ PI  VD  G +NGWN+
Sbjct: 423 KDGENAEADTKAIHTRLTDLRIDGMQELEAVTSEMVRLIETASVPILAVDVEGYVNGWNS 482

Query: 646 KVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705
           K+A+LTGL   EA+GK  + E+V + S  +V  ++  AL G+E++NV+ +++    +   
Sbjct: 483 KIADLTGLRVDEAIGKQFL-ELVEDSSTDSVSKMLKLALQGKEEQNVQFEIKTHGQRSDS 541

Query: 706 SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPI 765
             + ++VNAC S+D K NV GVCF+ QDIT  K +MDKF R++GDY+AI+Q+ NPLIPPI
Sbjct: 542 GPITLVVNACASKDVKENVVGVCFIAQDITAHKNMMDKFTRIEGDYKAIVQNPNPLIPPI 601

Query: 766 FASDE 770
           F +DE
Sbjct: 602 FGTDE 606


>gi|406685377|gb|AFS51129.1| phytochrome P, partial [Juniperus oxycedrus]
          Length = 507

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/491 (70%), Positives = 407/491 (82%), Gaps = 11/491 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQKLAV A SR+QA+  GDIGLLCD VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 19  VHSQKLAVRATSRVQAVANGDIGLLCDAVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 78

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q LCLV STL
Sbjct: 79  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQLLCLVGSTL 138

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
           R+PHGCH QYM NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 139 RAPHGCHAQYMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 198

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDML RDAP  IVTQSPSIMDL
Sbjct: 199 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLFRDAPIGIVTQSPSIMDL 258

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYG + WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 259 VKCDGAALYYGDKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLG 318

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 319 DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 378

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++++  + K   + Q N  K+QG DEL+S ACEM
Sbjct: 379 RRSLPWDNVEMDAIHSLQLILRGSFKDIDDSKN-KTMVHAQMNDLKLQG-DELNSAACEM 436

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++
Sbjct: 437 VRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVAKML 496

Query: 681 CRALLGEEDKN 691
             AL GEEDKN
Sbjct: 497 YNALRGEEDKN 507


>gi|315377400|gb|ADU05537.1| phytochrome A [Koeberlinia spinosa]
          Length = 598

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/599 (57%), Positives = 441/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++  GA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTATGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSEI +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DCHA  V V
Sbjct: 61  TYKFHDDDHGEVVSEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHVKV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N  D             
Sbjct: 121 LQDEKLPFDLTLCGSTLRAPHSCHLQYMENMSSIASLVMAVVVNEGDEESDAPNSAQAQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELDNQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TPT+SQL DIA WL + H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKNKIWRLGITPTDSQLHDIAAWLSDYHRD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG AVCGMA  R+TSKD +FWFRSHTA E+KWGGAKH P  
Sbjct: 301 STGLSTDSLYDAGFPQALTLGDAVCGMAAVRVTSKDMIFWFRSHTAGEIKWGGAKHEPGE 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KDN  K HPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDNARKTHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETTDFNTKFLH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  +A+
Sbjct: 421 SKLNDLKIDGMKELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDKAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           G   +  +V + S   V+ ++  AL G+E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GNHFL-TLVEDSSVDRVKKMLDMALQGKEEQNVQFEIKTHGARIDAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
            + NV GVCFV QD+T +K +MDKF R++GDY+AIIQ+ NP IPPIF SDE   C+EWN
Sbjct: 540 LQENVVGVCFVAQDLTGQKNVMDKFTRIEGDYKAIIQNPNPSIPPIFGSDEFGWCTEWN 598


>gi|89331117|emb|CAJ80925.1| phytochrome A [Lamium purpureum]
          Length = 608

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/606 (56%), Positives = 443/606 (73%), Gaps = 13/606 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G I  LCD
Sbjct: 3   KPFYAIIHRVTGSLIIDFEPVKPHEVPMTAAGALQSYKLAAKAINRLQSLPSGSIERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FH+DDHGEV +EI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMVYKFHEDDHGEVFTEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRATHVKVIQDGNLPIDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKDS------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAM 404
             D              +LWGLVVCHHT+PR++PFPLRYACEFL Q F++ +  E ++  
Sbjct: 183 EGDEEGSGSDSPPEKRKRLWGLVVCHHTTPRFVPFPLRYACEFLAQVFAIHVNKEFELES 242

Query: 405 QLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTES 464
           Q+ EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDGAAL Y G+ + +G+TPT+ 
Sbjct: 243 QMLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGAALLYKGKKYRLGMTPTDF 302

Query: 465 QLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHT 524
           Q++D+  WL   H D TGLSTDSL +AG+PGA  LG A+CGMA  +IT KD+LFWFRSHT
Sbjct: 303 QIRDVVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAICGMAAVKITDKDWLFWFRSHT 362

Query: 525 AKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDS 584
           A EV+WGGAKH P  KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++
Sbjct: 363 ASEVRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSIPWKDYEMDAIHSLQLILRNA 422

Query: 585 FQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWN 644
           F+E    +      + + +  ++ G+ EL +V  EMVRLIETA+ PI  VD  G +NGWN
Sbjct: 423 FKESGGTDVEARAIHMKLSDLQIDGIQELEAVTSEMVRLIETASVPILAVDVDGLVNGWN 482

Query: 645 AKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQ 704
            K+A+LTGL   +A+G+  +D +V + S   V  ++  AL G E+ NV+ +L+      +
Sbjct: 483 TKIADLTGLSVDKAIGRHFLD-LVEDSSAHTVNQMLKLALEGNEEHNVQFELKNHGEMTE 541

Query: 705 HSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPP 764
              + ++VNAC SRD K +V GVCF+ QDIT +K +MDKF R++GDY AI+Q+ NPLIPP
Sbjct: 542 AGPISLVVNACASRDVKESVVGVCFIAQDITAQKSMMDKFTRIEGDYRAIVQNPNPLIPP 601

Query: 765 IFASDE 770
           IF +DE
Sbjct: 602 IFGTDE 607


>gi|315377402|gb|ADU05538.1| phytochrome A [Moringa oleifera]
          Length = 596

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/597 (57%), Positives = 443/597 (74%), Gaps = 14/597 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G I  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSIERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEV+SEI +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DCHA  + V
Sbjct: 61  AYKFHDDDHGEVISEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHIKV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N  D             
Sbjct: 121 LQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEETDGANPVQPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  IV+Q P+IMDLVKCDGAAL Y  + W +GVTPT+ QL +IA WL + H D
Sbjct: 241 DMLMRDAPLGIVSQIPNIMDLVKCDGAALLYKSKLWRLGVTPTDVQLHEIASWLSDYHMD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+PGA  LG  V GMA  RITSKD LFWFRSHTA E++WGGAKH P  
Sbjct: 301 STGLSTDSLYDAGFPGALALGDVVSGMAAVRITSKDMLFWFRSHTAAEIRWGGAKHEPGE 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ +    +    +
Sbjct: 361 KDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDTKTVEFNTKTIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K++G+ EL +V  EMVRLIETAT PI  VD +G +NGWN K++ELTGLP  EA+
Sbjct: 421 SKLNDLKLEGMQELEAVTSEMVRLIETATVPILAVDVNGLLNGWNTKISELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G+E+++V+ +++ F  +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSIDTVKKMLYMALQGKEEQDVQFQIKTFGSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776
              NV GVCFV QDIT +K++MDKF R++GDY+AI+Q+ NPLIPPIF +DE   C+E
Sbjct: 540 LHENVAGVCFVAQDITGQKIVMDKFTRIEGDYKAIVQNHNPLIPPIFGADEFGWCTE 596


>gi|89331043|emb|CAJ80888.1| phytochrome A [Boschniakia hookeri]
          Length = 615

 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/614 (55%), Positives = 446/614 (72%), Gaps = 13/614 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQALPGG +  LCD
Sbjct: 3   KPFYAIIHRVTGSLIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQALPGGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV +EI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVSTEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V V+Q + L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVKVVQDENLSFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKDS------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAM 404
             +               LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E ++  
Sbjct: 183 EGNEDGPDSSSVPDKRKTLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIYVNKEFELEN 242

Query: 405 QLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTES 464
           Q+ EKNILRTQ LLCD+LLRDAP  IV+QSP++MDLVKCDGA L Y    + +G+TP++ 
Sbjct: 243 QMLEKNILRTQTLLCDLLLRDAPLGIVSQSPNVMDLVKCDGAVLLYKNTKYRLGLTPSDF 302

Query: 465 QLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHT 524
           Q++DI  WL   H D TGLSTDSL +AG+PGA  L  AVCGM   RIT +D+LFWFRSHT
Sbjct: 303 QIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALSLCDAVCGMVAVRITERDWLFWFRSHT 362

Query: 525 AKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDS 584
           A E++WGGAKH P   D+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++
Sbjct: 363 AAEIQWGGAKHEPGETDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNA 422

Query: 585 FQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWN 644
           F+E E  +    + + + +  ++ GV E+ +V  EMVRLIETA+ PIF VD  G +NGWN
Sbjct: 423 FKESEGRDSESREIHARLHDLQIDGVREIEAVTSEMVRLIETASVPIFAVDVDGLVNGWN 482

Query: 645 AKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQ 704
            K+A+LTGL   +A+G   +  +V + S   V  ++  AL G+E++NV+ +++      +
Sbjct: 483 TKIADLTGLCVDKAIGWHFL-ALVEDSSADTVSKMLELALQGKEEQNVQFEIKTHGQTSE 541

Query: 705 HSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPP 764
              + ++VNAC SRD K NV GVCF+ QDIT +K++MDKF R++GDY  I+Q+ NPLIPP
Sbjct: 542 SGPITLIVNACASRDVKGNVVGVCFIAQDITTQKIMMDKFTRIEGDYRTIVQNPNPLIPP 601

Query: 765 IFASDENACCSEWN 778
           IF +DE   CSEWN
Sbjct: 602 IFGTDEFGWCSEWN 615


>gi|89330110|emb|CAJ80967.1| phytochrome A [Phtheirospermum japonicum]
          Length = 610

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/608 (56%), Positives = 447/608 (73%), Gaps = 15/608 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+  G++ID EP K  +  ++ AGA+QS KLA  AI+RLQALP G +  LCD
Sbjct: 3   KPFYAIIHRVTGGLIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQALPSGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LT YDRVM+Y FHDDDHGEV+SEI +  L+PY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTSYDRVMIYKFHDDDHGEVLSEITKPGLDPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVKVIQDDNLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKD-------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVA 403
             +               +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++ 
Sbjct: 183 EGNEDGPDSSSSHPDKKKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEIELE 242

Query: 404 MQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTE 463
            Q+ EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDGA L Y  + + +G+TP++
Sbjct: 243 NQMLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGAVLIYKTKKYRLGMTPSD 302

Query: 464 SQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSH 523
            Q++DI  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  RIT KD+LFWFRSH
Sbjct: 303 FQIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRITDKDWLFWFRSH 362

Query: 524 TAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRD 583
           TA E++WGGAKH P  KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R+
Sbjct: 363 TAAEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDIEMDAIHSLQLILRN 422

Query: 584 -SFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTING 642
            S +E EE +    + + + N  ++ G+ EL +V  EMVRLIETA+ PIF VD  G +NG
Sbjct: 423 ASNKEAEERDMDGKEIHARLNDLQLDGMQELEAVTSEMVRLIETASVPIFAVDVDGLVNG 482

Query: 643 WNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQ 702
           WN K+A+LTGLP  +A+G+  +  +V + S   V  ++  AL G E++NV+ +++    +
Sbjct: 483 WNTKIADLTGLPVEKAIGRHFL-ALVEDSSAEKVNKMLELALQGNEERNVQFEIKTHGPR 541

Query: 703 KQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLI 762
            +   + ++VNAC SRD K NV GVCF+ QDIT +K +MDKF R++GDY AI+Q+ N LI
Sbjct: 542 SESGPISLIVNACASRDVKENVVGVCFIAQDITTQKSMMDKFTRIEGDYRAIVQNPNQLI 601

Query: 763 PPIFASDE 770
           PPIF SDE
Sbjct: 602 PPIFGSDE 609


>gi|406685383|gb|AFS51132.1| phytochrome P, partial [Juniperus scopulorum]
          Length = 542

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/526 (67%), Positives = 418/526 (79%), Gaps = 12/526 (2%)

Query: 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIR 269
           V SQKLAV A SRLQA+  GDIGLLCD+VVE+V++LTGYDRVM+Y FH+D+HGEVV+EIR
Sbjct: 20  VPSQKLAVRATSRLQAVANGDIGLLCDSVVEEVRELTGYDRVMVYKFHEDEHGEVVAEIR 79

Query: 270 RSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTL 329
           RSDLEPYLG+H+PA DIPQA+RFLF QN+VRMI DC A PV +IQ++EL Q         
Sbjct: 80  RSDLEPYLGLHYPATDIPQASRFLFMQNKVRMISDCRADPVRIIQAEELPQXXXXXXXXX 139

Query: 330 RSPHGCHLQYMTNMGSIASLVMAVIINS---------KDSMKLWGLVVCHHTSPRYIPFP 380
                     M NMGSIASL MAVI+N+         +++ KLWGLVVCHHTSPR +PFP
Sbjct: 140 XXXXXXXXXXMANMGSIASLAMAVIVNNGNDEVGSSGRNTGKLWGLVVCHHTSPRAVPFP 199

Query: 381 LRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDL 440
           LR ACEFL+Q FSLQ+ ME+Q+A QL E NILRTQ LLCDMLLRDAP  IVTQSPSIMDL
Sbjct: 200 LRSACEFLMQTFSLQINMEMQLATQLTENNILRTQTLLCDMLLRDAPIGIVTQSPSIMDL 259

Query: 441 VKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLG 500
           VKCDGAALYYG + WL+GVTPTE+Q+KDIA WLL  HGD TGLSTDSLA+AGYPGAA LG
Sbjct: 260 VKCDGAALYYGDKFWLIGVTPTEAQIKDIADWLLEYHGDSTGLSTDSLADAGYPGAASLG 319

Query: 501 QAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVK 560
            AVCGMA ARITSKDFLFWFRSHTAKE+KWGGAKHHP+ KD+G +MHPRSSFKAFLEVVK
Sbjct: 320 DAVCGMAAARITSKDFLFWFRSHTAKEIKWGGAKHHPDDKDDGRRMHPRSSFKAFLEVVK 379

Query: 561 NRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEM 620
            RS PW+  E++AIHSLQ+++R SF+++++  + K   + Q N  K+QG DEL+S ACEM
Sbjct: 380 RRSLPWDNVEMDAIHSLQLILRGSFKDIDDSKN-KTMVHAQMNDLKLQG-DELNSAACEM 437

Query: 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLI 680
           VR+IETA API GVDS+G +NGWN+  AELTGLPA EAMGKSL+ ++V EES   V  ++
Sbjct: 438 VRVIETAHAPILGVDSAGIVNGWNSYAAELTGLPAEEAMGKSLVHDLVLEESIETVAKML 497

Query: 681 CRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKG 726
             AL GEEDKNVE+KLR F  Q Q  V+ ++VNAC+SRDY  N+ G
Sbjct: 498 YNALRGEEDKNVEIKLRTFGPQMQKEVI-LVVNACSSRDYTYNIVG 542


>gi|345424502|gb|AEN85355.1| phytochrome A, partial [Kremeriella cordylocarpus]
          Length = 599

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/600 (57%), Positives = 443/600 (73%), Gaps = 15/600 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ ++ LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKTGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSSDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAAPDSTAPQ 180

Query: 361 --MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLL 418
              +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LL
Sbjct: 181 KRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLL 240

Query: 419 CDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHG 478
           CDML+RDAP  IV+QSP++MDLVKCDGAAL Y  + W +G+TP+E  L++IA WL   H 
Sbjct: 241 CDMLMRDAPLGIVSQSPNVMDLVKCDGAALLYKDKVWKLGITPSEFHLQEIASWLCEYHT 300

Query: 479 DCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPE 538
           D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+
Sbjct: 301 DSTGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPD 360

Query: 539 HKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG 598
            KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    
Sbjct: 361 DKDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETTDVNTKII 420

Query: 599 NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEA 658
            ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA
Sbjct: 421 YSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEA 480

Query: 659 MGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSR 718
           +GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SR
Sbjct: 481 IGKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASR 539

Query: 719 DYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
           D   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 DLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 599


>gi|345424394|gb|AEN85301.1| phytochrome A, partial [Erucaria erucarioides]
 gi|345424398|gb|AEN85303.1| phytochrome A, partial [Erucaria erucarioides]
          Length = 598

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/599 (57%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEEDGPDSTGPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +GVTP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGVTPSDYHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EVKWGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAAEVKWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKRRSLPWKDYEMDAIHSLQLILRNAFKDGETTDVNTTIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424278|gb|AEN85243.1| phytochrome A, partial [Coincya longirostra]
          Length = 599

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/600 (57%), Positives = 443/600 (73%), Gaps = 15/600 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAAPDSTAPQ 180

Query: 361 --MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLL 418
              +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LL
Sbjct: 181 KRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLL 240

Query: 419 CDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHG 478
           CDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP+E QL +IA WL   H 
Sbjct: 241 CDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPSEFQLHEIASWLCEYHT 300

Query: 479 DCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPE 538
           D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+
Sbjct: 301 DSTGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPD 360

Query: 539 HKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG 598
            KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    
Sbjct: 361 DKDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFRDGETTDVNTKII 420

Query: 599 NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEA 658
           +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA
Sbjct: 421 HSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEA 480

Query: 659 MGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSR 718
           +GK  +  +V + S   V+ ++ +AL G E++NV+ +++    +     + ++VNAC SR
Sbjct: 481 IGKHFL-TLVEDSSVEIVKRMLEKALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASR 539

Query: 719 DYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
           D   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 DLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 599


>gi|89331101|emb|CAJ80917.1| phytochrome A [Euphrasia regelii]
          Length = 619

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/618 (56%), Positives = 448/618 (72%), Gaps = 17/618 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AISRLQ+LP G +  LC+
Sbjct: 3   KPFYAIIHRVTASLIIDFEPVKPHEVPMTAAGALQSYKLASKAISRLQSLPSGSMERLCE 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FH+DDHGEV++EI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHEDDHGEVLTEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVRVIQDVNLPLDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKDS--------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402
             +                +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  EL++
Sbjct: 183 EGNEEAGPDDSSQHLDKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELEL 242

Query: 403 AMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPT 462
             Q+ EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDGA L +  +   +G+TP+
Sbjct: 243 ENQMLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGAILLHKNQKHRLGITPS 302

Query: 463 ESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRS 522
           + Q++DI  WL   H D TGLSTD L +AG+PGA  LG  VCGMA  RIT +D+LFWFRS
Sbjct: 303 DFQIRDIVSWLDEYHRDSTGLSTDGLYDAGFPGALALGDVVCGMAAVRITDRDWLFWFRS 362

Query: 523 HTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMR 582
           HTA E++WGGAKH    +D+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R
Sbjct: 363 HTASEIRWGGAKHEQGERDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILR 422

Query: 583 D-SFQEMEEEND-SKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTI 640
           + S +EMEE  D   V+   + N  ++ GV EL +V  EMVRLIETA+ PIF V   G +
Sbjct: 423 NASSKEMEERKDLEGVEIQARLNELQIDGVQELEAVTSEMVRLIETASVPIFAVGVDGLV 482

Query: 641 NGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700
           NGWN K+A+LTGLP  +A+G   +  +V E S  AV  ++  AL G+E++NV  +++   
Sbjct: 483 NGWNTKIADLTGLPVDKAIGVHFL-SLVEESSAEAVSKMLELALEGKEEQNVHFEIKTHG 541

Query: 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNP 760
                S + ++VNAC SRD + NV GVCF+ QDIT +K +MDKF R++GDY AI+Q+ NP
Sbjct: 542 PNSDSSPISLIVNACASRDVRENVVGVCFIAQDITTQKSVMDKFTRIEGDYRAIVQNPNP 601

Query: 761 LIPPIFASDENACCSEWN 778
           +IPPIF +DE   CSEWN
Sbjct: 602 VIPPIFGTDEFGWCSEWN 619


>gi|345424396|gb|AEN85302.1| phytochrome A, partial [Erucaria erucarioides]
          Length = 598

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/599 (57%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDTVV++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTVVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEEDGPDSTGPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +GVTP++  L+++A WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGVTPSDYHLQEVASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EVKWGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAAEVKWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKRRSLPWKDYEMDAIHSLQLILRNAFKDGETTDVNTTIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ  NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQIPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424276|gb|AEN85242.1| phytochrome A, partial [Coincya longirostra]
          Length = 599

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/600 (57%), Positives = 443/600 (73%), Gaps = 15/600 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVGV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAAPDSTAPQ 180

Query: 361 --MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLL 418
              +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LL
Sbjct: 181 KRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLL 240

Query: 419 CDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHG 478
           CDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP+E QL +IA WL   H 
Sbjct: 241 CDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPSEFQLHEIASWLCEYHT 300

Query: 479 DCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPE 538
           D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+
Sbjct: 301 DSTGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPD 360

Query: 539 HKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG 598
            KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    
Sbjct: 361 DKDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFRDGETTDVNTKII 420

Query: 599 NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEA 658
           +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA
Sbjct: 421 HSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEA 480

Query: 659 MGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSR 718
           +GK  +  +V + S   V+ ++ +AL G E++NV+ +++    +     + ++VNAC SR
Sbjct: 481 IGKHFL-TLVEDSSVEIVKRMLEKALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASR 539

Query: 719 DYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
           D   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 DLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 599


>gi|345424280|gb|AEN85244.1| phytochrome A, partial [Coincya longirostra]
          Length = 595

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/596 (57%), Positives = 444/596 (74%), Gaps = 11/596 (1%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FH+DDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHEDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVKV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS----------MK 362
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +++           +
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHTCHLQYMANMDSIASLVMAVVVNEEEADDSTTETQKRKR 180

Query: 363 LWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDML 422
           LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLCDML
Sbjct: 181 LWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLCDML 240

Query: 423 LRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTG 482
           +RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP+E QL +IA WL   H D TG
Sbjct: 241 MRDAPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPSEFQLHEIASWLCEYHTDSTG 300

Query: 483 LSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDN 542
           LSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+ KD+
Sbjct: 301 LSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPDDKDD 360

Query: 543 GGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQ 602
             +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +++ 
Sbjct: 361 ARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFRDGETTDVNTKIIHSKL 420

Query: 603 NGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKS 662
           N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+GK 
Sbjct: 421 NDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAIGKH 480

Query: 663 LIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKN 722
            +  +V + S   V+ ++ +AL G E++NV+ +++    +     + ++VNAC SRD   
Sbjct: 481 FL-TLVEDSSVEIVKRMLEKALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRDLHE 539

Query: 723 NVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
           NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 NVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 595


>gi|345424324|gb|AEN85266.1| phytochrome A, partial [Crambella teretifolia]
          Length = 598

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/599 (57%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDGPDSTTPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EVKWGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAAEVKWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKRRSLPWKDYEMDAIHSLQLILRNAFKDGETTDMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-ALVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424326|gb|AEN85267.1| phytochrome A, partial [Crambella teretifolia]
          Length = 598

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/599 (57%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDGPDSTSPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EVKWGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAAEVKWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKRRSLPWKDYEMDAIHSLQLILRNAFKDGETTDMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424400|gb|AEN85304.1| phytochrome A, partial [Erucaria erucarioides]
          Length = 598

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/599 (57%), Positives = 441/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEEDGPDSTGPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I +QSP+IMDLVKCDGAAL Y  + W +GVTP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGITSQSPNIMDLVKCDGAALLYKDKVWKLGVTPSDYHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EVKWGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAAEVKWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ ++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKRRSLPWKDYEMDAIHSLQFILRNAFKDGETTDVNTTIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424402|gb|AEN85305.1| phytochrome A, partial [Erucaria hispanica]
          Length = 598

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/599 (56%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424198|gb|AEN85203.1| phytochrome A, partial [Cakile arabica]
 gi|345424416|gb|AEN85312.1| phytochrome A, partial [Erucaria ollivieri]
          Length = 598

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/599 (56%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424414|gb|AEN85311.1| phytochrome A, partial [Erucaria microcarpa]
          Length = 598

 Score =  726 bits (1873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/598 (57%), Positives = 442/598 (73%), Gaps = 14/598 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTSPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TPT+  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPTDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLESALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEW 777
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEW
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEW 597


>gi|345424580|gb|AEN85394.1| phytochrome A, partial [Stanleya pinnata]
 gi|345424584|gb|AEN85396.1| phytochrome A, partial [Stanleya pinnata]
          Length = 597

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/599 (57%), Positives = 445/599 (74%), Gaps = 15/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  + A++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVAMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV+ N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHRCHLQYMVNMDSIASLVMAVV-NEEDGEGDAPDSTTPQK 179

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 180 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 239

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP+E  L++IA WL  NH D
Sbjct: 240 DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPSEFHLQEIASWLCENHTD 299

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH+P+ 
Sbjct: 300 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHNPDD 359

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ +  + +    +
Sbjct: 360 RDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGDTTDVNTKIIH 419

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 420 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 479

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  VV + S   V+ ++  AL G E++NV+ +++          + ++VNACTSRD
Sbjct: 480 GKHLL-TVVEDSSVEIVKRMLENALEGIEEQNVQFEIKTHLSSADAGPISLVVNACTSRD 538

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 539 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 597


>gi|345424330|gb|AEN85269.1| phytochrome A, partial [Crambella teretifolia]
          Length = 598

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/599 (56%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDGPDSTSPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EVKWGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAAEVKWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKRRSLPWKDYEMDAIHSLQLILRNAFKDGETTDMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CS+WN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSDWN 598


>gi|345424392|gb|AEN85300.1| phytochrome A, partial [Erucaria erucarioides]
          Length = 598

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/599 (57%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEEDGPDSTGPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +GVTP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGVTPSDYHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMAT RITSKD +FWFRSHTA EVKWGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALSLGDSVCGMATVRITSKDMIFWFRSHTAAEVKWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKRRSLPWKDYEMDAIHSLQLILRNAFKDGETTDVNTTIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF  ++GD +AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTSIEGDCKAIIQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424406|gb|AEN85307.1| phytochrome A, partial [Erucaria hispanica]
          Length = 598

 Score =  725 bits (1872), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/599 (56%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424408|gb|AEN85308.1| phytochrome A, partial [Erucaria hispanica]
          Length = 598

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/599 (56%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVGV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424536|gb|AEN85372.1| phytochrome A, partial [Psychine stylosa]
          Length = 598

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/599 (57%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFELTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRS TA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSPTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGEATDVNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  VV E S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TVVEESSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|89331095|emb|CAJ80914.1| phytochrome A [Esterhazya campestris]
          Length = 606

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/608 (56%), Positives = 447/608 (73%), Gaps = 18/608 (2%)

Query: 178 PFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDT 237
           PFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQALP G +  LCDT
Sbjct: 1   PFYAIIHRVTGSMIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQALPSGSMERLCDT 60

Query: 238 VVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQN 297
           +V++V +LTGYDRVM+Y FHDDDHGEV+SEI +  LEPY+G+H+PA DIPQAARFLF +N
Sbjct: 61  MVQEVFELTGYDRVMIYKFHDDDHGEVLSEITKPGLEPYVGLHYPATDIPQAARFLFIKN 120

Query: 298 RVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINS 357
           +VRMICDC A  V VIQ   L   L L  STLR+PH CHLQYM NM SIASLVM+V++N 
Sbjct: 121 KVRMICDCRANHVKVIQDDNLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVNE 180

Query: 358 KD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQ 405
            +              +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q
Sbjct: 181 GNEDGPDSSSHPDKKKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNREIELENQ 240

Query: 406 LAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQ 465
           + EKNILRTQ LLCDML+RDAP  IV+QSP++MDLVKCDGA L Y  + + +G+TP++ Q
Sbjct: 241 MLEKNILRTQTLLCDMLMRDAPLGIVSQSPNVMDLVKCDGAVLIYKTKKYRLGMTPSDFQ 300

Query: 466 LKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTA 525
           ++DI  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  RIT+ D+LFWFRSHTA
Sbjct: 301 IRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRITNTDWLFWFRSHTA 360

Query: 526 KEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSF 585
            E++WGGAKH P  KD+G KMHPR SFKAFLEVVK RS PW+  E++AIHSLQ+++R++ 
Sbjct: 361 AEIRWGGAKHEPGEKDDGRKMHPRLSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNAS 420

Query: 586 QEMEEENDSKVQG---NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTING 642
            +  EE D  V+G   + + N  ++ G+ EL +V  EMVRLIETA+ PIF VD  G +NG
Sbjct: 421 NKEAEEGD--VEGKEIHARLNDLQLDGIQELEAVTSEMVRLIETASVPIFAVDVDGLVNG 478

Query: 643 WNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQ 702
           WN K+A+LTGL   +A+G   +  +V + S  AV  ++  AL G E++NV+ +++   L+
Sbjct: 479 WNTKIADLTGLAVDKAIGTHFL-ALVEDSSAEAVNKMLELALQGNEERNVQFEIKTHGLR 537

Query: 703 KQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLI 762
            + + + ++VNAC SRD K NV GVCF+ QDIT +K +MDKF R++GDY AI+Q+ N LI
Sbjct: 538 SESAPISLIVNACASRDVKENVVGVCFIAQDITTQKSMMDKFTRIEGDYRAIVQNPNQLI 597

Query: 763 PPIFASDE 770
           PPIF +DE
Sbjct: 598 PPIFGTDE 605


>gi|345424424|gb|AEN85316.1| phytochrome A, partial [Erucaria pinnata]
          Length = 598

 Score =  725 bits (1871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/599 (56%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP++MDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNVMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424410|gb|AEN85309.1| phytochrome A, partial [Erucaria microcarpa]
          Length = 598

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/599 (56%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+P  DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPTTDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTSPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TPT+  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPTDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLESALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424380|gb|AEN85294.1| phytochrome A, partial [Erucaria cakiloidea]
          Length = 597

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/598 (57%), Positives = 441/598 (73%), Gaps = 14/598 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDDPDSTSPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EVKWGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALPLGDSVCGMAAVRISSKDMIFWFRSHTAAEVKWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS  W+  E++AIHSLQ+++RD+F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKRRSLAWKDYEMDAIHSLQLILRDAFKDGETTDVNTNIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G ED+NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEDQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEW 777
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEW
Sbjct: 540 LHGNVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEW 597


>gi|345424526|gb|AEN85367.1| phytochrome A, partial [Muricaria prostrata]
          Length = 598

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/599 (57%), Positives = 441/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPNSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP +  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPGDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P  
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPGD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 RDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETTDVNTKTIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424334|gb|AEN85271.1| phytochrome A, partial [Didesmus aegyptius]
 gi|345424336|gb|AEN85272.1| phytochrome A, partial [Didesmus aegyptius]
 gi|345424338|gb|AEN85273.1| phytochrome A, partial [Didesmus bipinnatus]
 gi|345424344|gb|AEN85276.1| phytochrome A, partial [Didesmus bipinnatus]
          Length = 598

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/599 (56%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLESALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424194|gb|AEN85201.1| phytochrome A, partial [Cakile arabica]
          Length = 598

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/599 (56%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFRDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPISAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424196|gb|AEN85202.1| phytochrome A, partial [Cakile arabica]
          Length = 598

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/599 (56%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGY RVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYGRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ ++ LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKTGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424412|gb|AEN85310.1| phytochrome A, partial [Erucaria microcarpa]
          Length = 598

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/599 (56%), Positives = 441/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V+ V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQKVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTSPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+ SPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNASPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TPT+  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPTDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLESALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424340|gb|AEN85274.1| phytochrome A, partial [Didesmus bipinnatus]
          Length = 598

 Score =  723 bits (1867), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/599 (56%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I+ QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIIPQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLESALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424418|gb|AEN85313.1| phytochrome A, partial [Erucaria ollivieri]
          Length = 598

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/599 (56%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FW RSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDMIFWVRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424420|gb|AEN85314.1| phytochrome A, partial [Erucaria ollivieri]
          Length = 598

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/599 (56%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++    L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKPSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|89331135|emb|CAJ80934.1| phytochrome A [Lindenbergia muraria]
          Length = 611

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/609 (55%), Positives = 445/609 (73%), Gaps = 16/609 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   +++D EP K  D  ++ AGA+QS +LA  AI+RLQ+LP G +  LCD
Sbjct: 3   KPFYAIIHRVTGSLIVDFEPVKLHDVPMTAAGALQSYELAAKAITRLQSLPSGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+ ++V +LTGYDRVM+Y FHDDDHGEV++EI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMAQEVFELTGYDRVMIYKFHDDDHGEVITEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC +  V V+Q   L   L L  STLR+PH CH QYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRSNNVKVVQDGNLPFDLTLCGSTLRAPHSCHAQYMGNMTSIASLVMSVVVN 182

Query: 357 SKDS---------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQ 401
             +                 +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E++
Sbjct: 183 EGEEEASSPDSSSSHPDKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHINKEVE 242

Query: 402 VAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTP 461
           +  Q+ EKNILRTQ LLCDMLLRDAP  +V+QSP+IMDLVKCDGA L Y    +  G+TP
Sbjct: 243 LENQMLEKNILRTQTLLCDMLLRDAPLGVVSQSPNIMDLVKCDGAMLLYKNEKYRFGLTP 302

Query: 462 TESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFR 521
           ++ Q++DI  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  RIT  D+LFWFR
Sbjct: 303 SDFQIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRITGGDWLFWFR 362

Query: 522 SHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVM 581
           SHTA E++WGGAKH    KD+GGKMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++
Sbjct: 363 SHTAAEIRWGGAKHELGEKDDGGKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLIL 422

Query: 582 RDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTIN 641
           R++ +E E+++   V+   + N  ++ G+ EL +V  EMVRLIETA+ PIF VD  G +N
Sbjct: 423 RNAAREAEKKDWEGVELQARLNDLQIDGIQELEAVTSEMVRLIETASVPIFAVDGDGLVN 482

Query: 642 GWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFEL 701
           GWN K+++LTGLP  +A+G   +  +V + S   V  ++  A+ G+E++NV+ +++    
Sbjct: 483 GWNTKISDLTGLPVDKAIGTHFL-HLVEDSSADTVSKMLELAIQGKEERNVQFEIKTHGP 541

Query: 702 QKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPL 761
           + + + + ++VNAC S+D K NV GVCF+ QDIT EK +MDKF R++GDY AIIQ+ NPL
Sbjct: 542 KSESAPITLIVNACASKDVKENVVGVCFIAQDITTEKSVMDKFTRIEGDYRAIIQNPNPL 601

Query: 762 IPPIFASDE 770
           IPPIF +DE
Sbjct: 602 IPPIFGTDE 610


>gi|345424422|gb|AEN85315.1| phytochrome A, partial [Erucaria pinnata]
 gi|345424426|gb|AEN85317.1| phytochrome A, partial [Erucaria pinnata]
          Length = 598

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/599 (56%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FH DDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHHDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSSAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424378|gb|AEN85293.1| phytochrome A, partial [Erucaria cakiloidea]
          Length = 598

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/599 (56%), Positives = 441/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y F DDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFRDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGNDPDSTSPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLREIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EVKWGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAAEVKWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS  W+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKRRSLAWKDYEMDAIHSLQLILRNAFKDGETTDVNTNIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G ED+NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEDQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424328|gb|AEN85268.1| phytochrome A, partial [Crambella teretifolia]
          Length = 598

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/599 (56%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDGPDSTTPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EK+ILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKDILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EVKWGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAAEVKWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKRRSLPWKDYEMDAIHSLQLILRNAFKDGETTDMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-ALVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDK  R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKLTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424260|gb|AEN85234.1| phytochrome A, partial [Cakile maritima]
          Length = 598

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/599 (56%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLREIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424332|gb|AEN85270.1| phytochrome A, partial [Didesmus aegyptius]
          Length = 597

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/598 (56%), Positives = 442/598 (73%), Gaps = 14/598 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLESALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEW 777
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEW
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEW 597


>gi|345424192|gb|AEN85200.1| phytochrome A, partial [Cakile arabica]
          Length = 598

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/599 (56%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSK-------DSM---- 361
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +       DS     
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEGGEGDAPDSTAPQK 180

Query: 362 --KLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKN LRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNTLRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHAD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424180|gb|AEN85194.1| phytochrome A, partial [Brassica oleracea]
          Length = 601

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/602 (56%), Positives = 440/602 (73%), Gaps = 17/602 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDTVV++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTVVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSSDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGGEGDATAPDSTP 180

Query: 361 ----MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQV 416
                +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ 
Sbjct: 181 PQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQT 240

Query: 417 LLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN 476
           LLCDML+RD P  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP+E  L++IA WL   
Sbjct: 241 LLCDMLMRDTPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPSEFHLQEIASWLCEY 300

Query: 477 HGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHH 536
           H D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH 
Sbjct: 301 HTDSTGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHD 360

Query: 537 PEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKV 596
           P  +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +  
Sbjct: 361 PVDRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETTDVNTK 420

Query: 597 QGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPAS 656
             +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  
Sbjct: 421 IIHSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVD 480

Query: 657 EAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACT 716
           EA+GK L+  +V + S   V+ ++  AL   E++NV+ +++    +     + ++VNAC 
Sbjct: 481 EAIGKHLL-TLVEDSSVEIVKRMLENALERTEEQNVQFEIKTHLSRADAGPISLVVNACA 539

Query: 717 SRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776
           SRD   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSE
Sbjct: 540 SRDLHENVAGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSE 599

Query: 777 WN 778
           WN
Sbjct: 600 WN 601


>gi|345424524|gb|AEN85366.1| phytochrome A, partial [Muricaria prostrata]
          Length = 597

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/598 (57%), Positives = 440/598 (73%), Gaps = 14/598 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPNSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP +  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPGDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P  
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPGD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 RDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETTDVNTKTIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEW 777
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEW
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEW 597


>gi|89330104|emb|CAJ80964.1| phytochrome A [Pedicularis kerneri]
          Length = 612

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/610 (56%), Positives = 446/610 (73%), Gaps = 17/610 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   +++D EP K  +  ++ AGA+QS KLA  AI+RLQALP G +  LCD
Sbjct: 3   KPFYAIIHRVTGSLIVDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQALPSGSLERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV+SEI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVLSEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVRVIQDDNLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKD---------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQ 401
             +                 +LWGLVVCH+TSPR+IPFPLRYACEFL Q F++ +  E++
Sbjct: 183 EGNEDGPDSSSSSSHPDKKKRLWGLVVCHNTSPRFIPFPLRYACEFLAQVFAIHVNKEIE 242

Query: 402 VAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTP 461
           +  Q  EKNILRTQ LLCDMLLRDAP  IV++SP++MDLVKC+GA L +  + + +G+TP
Sbjct: 243 LENQTLEKNILRTQTLLCDMLLRDAPLGIVSKSPNVMDLVKCNGAILIHKTKKYRLGMTP 302

Query: 462 TESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFR 521
           ++ Q++DI  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  RIT +D+LFWFR
Sbjct: 303 SDFQIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRITDEDWLFWFR 362

Query: 522 SHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVM 581
           SHTA E++WGGAKH P  KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++
Sbjct: 363 SHTAAEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLIL 422

Query: 582 R-DSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTI 640
           R  S +E EE + +  + + + N  ++ G+ EL +V  EMVRLIETA+ PIF V   G +
Sbjct: 423 RIASNKEAEERDTNGKEIHARLNDLQLDGIQELEAVTSEMVRLIETASVPIFAVGVDGLV 482

Query: 641 NGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700
           NGWN K+A+LTGLP  +AMG   +  +V + S  AV  ++  AL G E++NV+ + +   
Sbjct: 483 NGWNTKIADLTGLPVDKAMGSHFV-ALVDDSSAEAVNKMLELALQGNEEQNVQFEFKTHG 541

Query: 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNP 760
            + + S V ++VNAC SRD K N+ GVCF+ QDIT +K +MDKF R++GDY+AI+Q+ N 
Sbjct: 542 PRSESSPVSLVVNACASRDVKENIVGVCFIAQDITTQKSMMDKFTRIEGDYKAIVQNPNQ 601

Query: 761 LIPPIFASDE 770
           LIPPIF +DE
Sbjct: 602 LIPPIFGTDE 611


>gi|345424404|gb|AEN85306.1| phytochrome A, partial [Erucaria hispanica]
          Length = 597

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/598 (56%), Positives = 441/598 (73%), Gaps = 14/598 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V +V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVREVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEW 777
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEW
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEW 597


>gi|345424428|gb|AEN85318.1| phytochrome A, partial [Erucaria pinnata]
          Length = 598

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/599 (56%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FH DDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHHDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP++MDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNVMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETADMNTRIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424202|gb|AEN85205.1| phytochrome A, partial [Cakile arctica]
 gi|345424206|gb|AEN85207.1| phytochrome A, partial [Cakile constricta]
 gi|345424216|gb|AEN85212.1| phytochrome A, partial [Cakile constricta]
 gi|345424220|gb|AEN85214.1| phytochrome A, partial [Cakile constricta]
 gi|345424224|gb|AEN85216.1| phytochrome A, partial [Cakile edentula]
 gi|345424230|gb|AEN85219.1| phytochrome A, partial [Cakile edentula]
 gi|345424252|gb|AEN85230.1| phytochrome A, partial [Cakile lanceolata]
 gi|345424256|gb|AEN85232.1| phytochrome A, partial [Cakile lanceolata]
 gi|345424258|gb|AEN85233.1| phytochrome A, partial [Cakile lanceolata]
 gi|345424274|gb|AEN85241.1| phytochrome A, partial [Cakile maritima]
          Length = 598

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/599 (56%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|315377375|gb|ADU05525.1| phytochrome A [Cleome hassleriana]
          Length = 598

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/599 (56%), Positives = 441/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+R Q LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRSQTLPSGSMDRLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEV+SE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC A  V V
Sbjct: 61  AYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV+ N  +             
Sbjct: 121 LQDEKLPFDLTLCGSTLRAPHSCHLQYMENMSSIASLVMAVVFNEDEGEGDVPDSAPPHK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  EL++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLSQVFAIHVSKELELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TPT+ QL+DIA W+ + H D
Sbjct: 241 DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKIWKLGITPTDFQLQDIASWMSDYHRD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLST+SL +AG+PGA  LG +VCGMA  RITSKD +FWFRSHTA E++WGGAKH P+ 
Sbjct: 301 STGLSTESLYDAGFPGALALGDSVCGMAAVRITSKDMVFWFRSHTAGEIRWGGAKHDPDE 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  KMHPRSSFKAFLEVVK R  PW+  E++AIHSLQ+++R++F+E +  + +    +
Sbjct: 361 KDDSRKMHPRSSFKAFLEVVKTRCTPWKDYEMDAIHSLQLILRNTFKETDIIDVNTNVLH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VD+ G+INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKLDGIQELEAVTSEMVRLIETATVPILAVDADGSINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK+    +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKNF-PTLVEDSSVERVKKMLEMALEGTEEQNVQFEIKTHGSRVDAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV QD+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   C+EWN
Sbjct: 540 LHENVVGVCFVAQDLTAQKNVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCTEWN 598


>gi|345424262|gb|AEN85235.1| phytochrome A, partial [Cakile maritima]
          Length = 598

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/599 (56%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDTVV++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTVVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              N  GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENAVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424282|gb|AEN85245.1| phytochrome A, partial [Coincya monensis]
 gi|345424284|gb|AEN85246.1| phytochrome A, partial [Coincya monensis]
 gi|345424288|gb|AEN85248.1| phytochrome A, partial [Coincya monensis]
          Length = 599

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/600 (56%), Positives = 441/600 (73%), Gaps = 15/600 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+L  G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLSSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAAPDSTAPQ 180

Query: 361 --MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLL 418
              +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LL
Sbjct: 181 KRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLL 240

Query: 419 CDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHG 478
           CDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP+E  L +IA WL  +H 
Sbjct: 241 CDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKAWKLGITPSEFHLHEIASWLCESHT 300

Query: 479 DCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPE 538
           D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+
Sbjct: 301 DSTGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPD 360

Query: 539 HKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG 598
            KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    
Sbjct: 361 DKDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFRDGETTDVNTKII 420

Query: 599 NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEA 658
           +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELT LP  EA
Sbjct: 421 HSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTDLPVDEA 480

Query: 659 MGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSR 718
           +GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SR
Sbjct: 481 IGKHLL-TLVEDSSVEIVKRMLENALDGTEEQNVQFEIKTHLSRADAGPISLVVNACASR 539

Query: 719 DYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
           D   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 DLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 599


>gi|345424582|gb|AEN85395.1| phytochrome A, partial [Stanleya pinnata]
          Length = 597

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/598 (56%), Positives = 441/598 (73%), Gaps = 14/598 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
            M +RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP+E  L++IA WL  NH D
Sbjct: 241 GMPMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPSEFHLQEIASWLCENHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH+P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHNPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ +  + +    +
Sbjct: 361 RDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGDTTDVNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+A LTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAVLTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++          + ++VNACTSRD
Sbjct: 481 GKHLL-TIVEDSSVETVKRMLENALEGTEEQNVQFEIKTHLSSADAGPISLVVNACTSRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEW 777
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEW
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEW 597


>gi|345424246|gb|AEN85227.1| phytochrome A, partial [Cakile lanceolata]
          Length = 598

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/599 (56%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHT  EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTTGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424210|gb|AEN85209.1| phytochrome A, partial [Cakile constricta]
          Length = 598

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/599 (56%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           G+ L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GRHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424342|gb|AEN85275.1| phytochrome A, partial [Didesmus bipinnatus]
          Length = 598

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/598 (56%), Positives = 441/598 (73%), Gaps = 14/598 (2%)

Query: 194 LEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVML 253
            EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM 
Sbjct: 2   FEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMA 61

Query: 254 YNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313
           Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V+
Sbjct: 62  YKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRVL 121

Query: 314 QSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------- 360
           Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D              
Sbjct: 122 QDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQKR 181

Query: 361 MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCD 420
            +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLCD
Sbjct: 182 KRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLCD 241

Query: 421 MLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDC 480
           ML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D 
Sbjct: 242 MLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSDFHLQEIASWLCEYHTDS 301

Query: 481 TGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHK 540
           TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ K
Sbjct: 302 TGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSRDMIFWFRSHTAGEVRWGGAKHDPDDK 361

Query: 541 DNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNT 600
           D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    ++
Sbjct: 362 DDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGESADMNTKIIHS 421

Query: 601 QQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMG 660
           + N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+G
Sbjct: 422 KLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAIG 481

Query: 661 KSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDY 720
           K L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD 
Sbjct: 482 KHLL-TLVEDSSVEIVKRMLESALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRDL 540

Query: 721 KNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
             NV GVCF   D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 541 HENVVGVCFAAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|89330100|emb|CAJ80962.1| phytochrome A [Pedicularis julica]
          Length = 612

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/610 (55%), Positives = 444/610 (72%), Gaps = 17/610 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   +++D EP K  +  ++ AGA+QS KLA  AI+RLQALP G +  LCD
Sbjct: 3   KPFYAIIHRVTGSLIVDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQALPSGSLERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV+SEI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVLSEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVRVIQDDNLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKD---------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQ 401
             +                 +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E++
Sbjct: 183 EGNEDGPDSSSSSSHPDKKKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEIE 242

Query: 402 VAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTP 461
           +  Q  EKNILRTQ LLCDMLLRDAP  IV++SP++MDLVKC+GA L +  + + +G+TP
Sbjct: 243 LENQTLEKNILRTQTLLCDMLLRDAPLGIVSKSPNVMDLVKCNGAILIHKTKKYRLGMTP 302

Query: 462 TESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFR 521
           ++ Q++DI  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  RIT +D+LFWFR
Sbjct: 303 SDFQIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRITDEDWLFWFR 362

Query: 522 SHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVM 581
           SHTA E++WGGAKH P  KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++
Sbjct: 363 SHTAAEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLIL 422

Query: 582 RDSFQEMEEENDSKVQG-NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTI 640
           R++  +  EE D+  +  + + N  ++ G+ EL +V  EMVRLIETA+ PIF V   G +
Sbjct: 423 RNASNKQAEERDTNGKEIHARLNDLQLDGIQELEAVTSEMVRLIETASVPIFAVGVDGLV 482

Query: 641 NGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700
           NGWN K+A+LTGLP  +AMG   +  +V + S  AV  ++  AL G E++NV+ + +   
Sbjct: 483 NGWNTKIADLTGLPVDKAMGSHFV-ALVDDSSAEAVNKMLELALQGNEEQNVQFEFKTHG 541

Query: 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNP 760
            + +   V ++VNAC SRD K N+ GVCF+ QDIT +K +MDKF R++GDY AI+Q+ N 
Sbjct: 542 PRSESGPVSLVVNACASRDVKENIVGVCFIAQDITTQKSMMDKFTRIEGDYRAIVQNPNQ 601

Query: 761 LIPPIFASDE 770
           LIPPIF +DE
Sbjct: 602 LIPPIFGTDE 611


>gi|345424390|gb|AEN85299.1| phytochrome A, partial [Erucaria erucarioides]
          Length = 598

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/599 (56%), Positives = 441/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++  +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGIMERLCDTMVQEAFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEEDGPDSTGPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +GVTP++  L++IA  L   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGVTPSDYHLQEIASRLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EVKWGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAAEVKWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKRRSLPWKDYEMDAIHSLQLILRNAFKDGETTDVNTTIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|89330114|emb|CAJ80969.1| phytochrome A [Rhinanthus alectorolophus]
          Length = 614

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/610 (56%), Positives = 447/610 (73%), Gaps = 17/610 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQAL GG I  LC+
Sbjct: 3   KPFYAIIHRVTASLIIDFEPVKPHEVPMTAAGALQSYKLASKAIARLQALSGGSIERLCE 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM Y FH+DDHGEV++EI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMTYKFHEDDHGEVLTEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ + L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVRVIQDENLPMDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKDS--------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402
             +                +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++
Sbjct: 183 EGNEEAAPDETPQQLDKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEIEM 242

Query: 403 AMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPT 462
             Q+ EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDG+ L +  + + +G+TP+
Sbjct: 243 ENQMLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGSILLHKNQKYRLGITPS 302

Query: 463 ESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRS 522
           + Q++DI  WL   H D TGLSTDSL +AG+PGA  LG  VCGMA  RIT +D+LFWFRS
Sbjct: 303 DFQIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDVVCGMAAVRITDRDWLFWFRS 362

Query: 523 HTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMR 582
           HTA E++WGGAKH    +D+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R
Sbjct: 363 HTASEIRWGGAKHELGERDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILR 422

Query: 583 D-SFQEMEEENDSK-VQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTI 640
           + S +EMEE  D + V+   + N  ++ GV EL +V  EMVRLIETA+ PIF V   G +
Sbjct: 423 NASSKEMEERKDLEGVEIQARLNELQIDGVQELEAVTSEMVRLIETASVPIFAVGVDGLV 482

Query: 641 NGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700
           NGWN K+A+LTGLP  +A+G   +  +V E S  AV  ++  AL G+E++NV  +++   
Sbjct: 483 NGWNTKIADLTGLPVDKAIGLHFL-SLVEESSAEAVSKMLELALEGKEEQNVHFEIKTHG 541

Query: 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNP 760
                S + ++VNAC SRD++ NV GVCF+ QDIT +K +MDKF R++GDY AI+Q+ NP
Sbjct: 542 PNSDSSPISLIVNACASRDFRENVVGVCFIAQDITTQKSVMDKFTRIEGDYRAIVQNPNP 601

Query: 761 LIPPIFASDE 770
           +IPPIF +DE
Sbjct: 602 VIPPIFGTDE 611


>gi|89330106|emb|CAJ80965.1| phytochrome A [Pedicularis tuberosa]
          Length = 612

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/610 (55%), Positives = 445/610 (72%), Gaps = 17/610 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   +++D EP K  +  ++ AGA+QS KLA  AI+RLQALP G +  LCD
Sbjct: 3   KPFYAIIHRVTGSLIVDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQALPSGSLERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV+SEI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVLSEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVRVIQDDNLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKD---------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQ 401
             +                 +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E++
Sbjct: 183 EGNEDGPDSSSSSSHPDKKKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEIE 242

Query: 402 VAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTP 461
           +  Q  EKNILRTQ LLCDMLLRDAP  IV++SP++MDLVKC+GA L +  + + +G+TP
Sbjct: 243 LENQTLEKNILRTQTLLCDMLLRDAPLGIVSKSPNVMDLVKCNGAILIHKTKKYRLGMTP 302

Query: 462 TESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFR 521
           ++ Q++DI  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  RIT +D+LFWFR
Sbjct: 303 SDFQIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRITDEDWLFWFR 362

Query: 522 SHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVM 581
           SHTA E++WGGAKH P  KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++
Sbjct: 363 SHTAAEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLIL 422

Query: 582 RD-SFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTI 640
           R+ S +E EE + +  + + + N  ++ G+ EL +V  EMVRLIETA+ PIF V   G +
Sbjct: 423 RNASNKEAEERDTNGKEIHARLNDLQLDGIQELEAVTSEMVRLIETASVPIFAVGVDGLV 482

Query: 641 NGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700
           NGWN K+A+LTGLP  +AMG   +  +V + S  AV  ++  AL G E++NV+ + +   
Sbjct: 483 NGWNTKIADLTGLPVDKAMGSHFV-ALVDDSSAEAVNKMLELALQGNEEQNVQFEFKTHG 541

Query: 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNP 760
            + +   V ++VNAC SRD K N+ GVCF+ QDIT +K +MDKF R++GDY AI+Q+ N 
Sbjct: 542 PRSESGPVSLVVNACASRDVKENIVGVCFIAQDITTQKSMMDKFTRIEGDYRAIVQNPNQ 601

Query: 761 LIPPIFASDE 770
           LIPPIF +DE
Sbjct: 602 LIPPIFGTDE 611


>gi|89331103|emb|CAJ80918.1| phytochrome A [Euphrasia stricta]
          Length = 618

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/618 (55%), Positives = 446/618 (72%), Gaps = 18/618 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AISRLQ+LP G +  LC+
Sbjct: 3   KPFYAIIHRVTASLIIDFEPVKPHEVPMTAAGALQSYKLASKAISRLQSLPSGSMERLCE 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FH+DDHGEV++EI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHEDDHGEVLTEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVRVIQDVNLPLDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKDS--------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402
             +                +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  EL+ 
Sbjct: 183 EGNEEAGPDDSSQHLDKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELE- 241

Query: 403 AMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPT 462
             Q+ EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDGA L +  +   +G+TP 
Sbjct: 242 ENQMLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGAILLHKNQKHRLGITPR 301

Query: 463 ESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRS 522
           + Q++DI  WL   H D  GLSTDSL +AG+PGA   G  VCGMA  RIT +D+LFWFRS
Sbjct: 302 DFQIRDIVSWLDEYHRDSRGLSTDSLYDAGFPGALAFGDVVCGMAAVRITDRDWLFWFRS 361

Query: 523 HTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMR 582
           HTA E++WGGAKH    +D+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R
Sbjct: 362 HTASEIRWGGAKHEQGERDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILR 421

Query: 583 D-SFQEMEEENDSK-VQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTI 640
           + S +EMEE  D + V+   + N  ++ GV EL +V  EMVRLIETA+ PIF V   G +
Sbjct: 422 NASSKEMEERKDLEGVEIQARLNELQIDGVQELEAVTSEMVRLIETASVPIFAVGVDGLV 481

Query: 641 NGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700
           NGWN K+A+LTGLP  +A+G   +  +V E S  AV  ++  AL G+E++NV  +++   
Sbjct: 482 NGWNTKIADLTGLPVDKAIGVHFL-SLVEESSAEAVSKMLELALEGKEEQNVHFEIKTHG 540

Query: 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNP 760
                S + ++VNAC SRD + NV GVCF+ QDIT +K +MDKF R++GDY AI+Q+ NP
Sbjct: 541 PNSDSSPISLIVNACASRDVRENVVGVCFIAQDITTQKSVMDKFTRIEGDYRAIVQNPNP 600

Query: 761 LIPPIFASDENACCSEWN 778
           +IPPIF +DE   CSEWN
Sbjct: 601 VIPPIFGTDEFGWCSEWN 618


>gi|315377393|gb|ADU05534.1| phytochrome A [Schizopetalon walkeri]
          Length = 599

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/600 (56%), Positives = 440/600 (73%), Gaps = 15/600 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQALP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQALPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FH+DDHGEVVSE+ +  L+PYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHEDDHGEVVSEVTKPGLDPYLGLHYPATDIPQAARFLFIKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSVDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGSGPESTTQPQ 180

Query: 361 --MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLL 418
              +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  QL EKNILRTQ LL
Sbjct: 181 KRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQLVEKNILRTQTLL 240

Query: 419 CDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHG 478
           CDML+RDAP  IV+QSP++MDLVKCDGAAL Y  + W +G+TPTE  L++IA WL   H 
Sbjct: 241 CDMLMRDAPLGIVSQSPNVMDLVKCDGAALLYQDKIWKLGITPTEYHLQEIASWLCEYHT 300

Query: 479 DCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPE 538
           D TGLSTDSL +AG+P A  LG +VCGMA  RI+ +D +FWFRSHTA EV+WGGAKH P+
Sbjct: 301 DSTGLSTDSLHDAGFPKALALGDSVCGMAAVRISPRDMIFWFRSHTAGEVRWGGAKHDPD 360

Query: 539 HKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG 598
            KD+  +MHPRSSFKAFLEVVK RS PW+  E+NAIHSLQ+++R++F++ E  + +    
Sbjct: 361 DKDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMNAIHSLQLILRNAFKDSESSDVNAKII 420

Query: 599 NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEA 658
           +++ N   + G+ EL +V  EMVRLI+TAT PI  VDS G +NGWN K+AELTGLP  EA
Sbjct: 421 HSKLNDLNIDGIQELEAVTSEMVRLIDTATVPILAVDSDGLVNGWNTKIAELTGLPVDEA 480

Query: 659 MGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSR 718
           +GK L+ E+V + S   V+ ++  AL G E++NV+ +++          + ++ NAC SR
Sbjct: 481 IGKHLL-ELVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHRSGADAGPISLVANACASR 539

Query: 719 DYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
           D   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ +PLIPPIF +DE   C+EWN
Sbjct: 540 DSCENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPSPLIPPIFGTDEFGWCTEWN 599


>gi|89331097|emb|CAJ80915.1| phytochrome A [Euphrasia alsa]
          Length = 620

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/618 (55%), Positives = 446/618 (72%), Gaps = 17/618 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AISR Q+LP G +  LC+
Sbjct: 3   KPFYAIIHRVTASLIIDFEPIKPHEVPMTAAGALQSYKLASKAISRFQSLPSGSMERLCE 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FH+DDHGEV++EI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHEDDHGEVLTEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVRVIQDVNLPLDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKDS--------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402
             +                +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  EL++
Sbjct: 183 EGNEEAGPDDSSQHLDKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELEL 242

Query: 403 AMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPT 462
             Q+ EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDGA L +  +   +G+TP+
Sbjct: 243 ENQMLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGAILLHKNQKHRLGITPS 302

Query: 463 ESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRS 522
           + Q++DI  WL   H D TGLSTDSL +AG+PGA  LG  VCGMA+ +IT +D+LFWFRS
Sbjct: 303 DFQIRDIVSWLDEYHHDSTGLSTDSLYDAGFPGALALGDIVCGMASVKITDRDWLFWFRS 362

Query: 523 HTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMR 582
           HTA E++WGG+KH    +D+  KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R
Sbjct: 363 HTASEIRWGGSKHEQGERDDSRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILR 422

Query: 583 D-SFQEMEEEND-SKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTI 640
           + S +EM E  D   V+   + N  ++ GV EL +V  EMVRLIETA+ PIF V   G +
Sbjct: 423 NASSKEMGERKDLEGVEIQARLNELQIDGVQELEAVTSEMVRLIETASVPIFAVGVDGLV 482

Query: 641 NGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700
           NGWN K+A LTGLP  +A+G   +  +V E S  AV  ++  AL G+E++NV  ++R   
Sbjct: 483 NGWNTKIANLTGLPVDKAIGVHFL-SLVEESSAEAVSKMLELALEGKEEQNVHFEIRTHG 541

Query: 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNP 760
                S + ++VNAC SRD + NV GVCF+ QDIT +K +MDKF R++GDY AI+Q+ NP
Sbjct: 542 PNSDSSPISLIVNACASRDVQENVVGVCFIAQDITTQKSVMDKFTRIEGDYRAIVQNPNP 601

Query: 761 LIPPIFASDENACCSEWN 778
           +IPPIF +DE   CSEWN
Sbjct: 602 VIPPIFGTDEFGWCSEWN 619


>gi|345424218|gb|AEN85213.1| phytochrome A, partial [Cakile constricta]
          Length = 598

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/599 (56%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGA L Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAVLLYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|89330120|emb|CAJ80972.1| phytochrome A [Rhinanthus minor]
          Length = 612

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/610 (55%), Positives = 447/610 (73%), Gaps = 17/610 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQAL GG I  LC+
Sbjct: 3   KPFYAIIHRVTASLIIDFEPVKPHEVPMTAAGALQSYKLASKAIARLQALSGGSIERLCE 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM Y FH+DDHGEV++EI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMTYKFHEDDHGEVLTEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ + L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVRVIQDENLPMDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKDS--------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402
             +                +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++
Sbjct: 183 EGNEEAAPDETPQQLDKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEIEM 242

Query: 403 AMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPT 462
             Q+ EKNILRTQ LLCDMLLRDAP  +V+QSP++MDLVKCDG+ L +  + + +G+TP+
Sbjct: 243 ENQMLEKNILRTQTLLCDMLLRDAPLGMVSQSPNVMDLVKCDGSILLHKNQKYRLGITPS 302

Query: 463 ESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRS 522
           + Q++DI  WL   H D TGLSTDSL +AG+PGA  LG  VCGMA  RIT +D+LFWFRS
Sbjct: 303 DFQIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDVVCGMAAVRITDRDWLFWFRS 362

Query: 523 HTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMR 582
           HTA E++WGGAKH    +D+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R
Sbjct: 363 HTASEIRWGGAKHELGERDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILR 422

Query: 583 D-SFQEMEEENDSK-VQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTI 640
           + S +EMEE  D + V+   + N  ++ GV EL +V  EMVRLIETA+ PIF V   G +
Sbjct: 423 NASSKEMEERKDLEGVEIQARLNELQIDGVQELEAVTSEMVRLIETASVPIFAVGVDGLV 482

Query: 641 NGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700
           NGWN K+A+LTGLP  +A+G   +  +V E S  AV  ++  AL G+E++NV  +++   
Sbjct: 483 NGWNTKIADLTGLPVDKAIGLHFL-SLVEESSAEAVSKMLELALEGKEEQNVHFEIKTHG 541

Query: 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNP 760
                S + ++VNAC SRD++ NV GVCF+ QDIT +K +MDKF R++GDY AI+Q+ NP
Sbjct: 542 PNSDSSPISLIVNACASRDFRENVVGVCFIAQDITTQKSVMDKFTRIEGDYRAIVQNPNP 601

Query: 761 LIPPIFASDE 770
           +IPPIF +DE
Sbjct: 602 VIPPIFGTDE 611


>gi|345424214|gb|AEN85211.1| phytochrome A, partial [Cakile constricta]
          Length = 598

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/599 (56%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVV  RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVXTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424222|gb|AEN85215.1| phytochrome A, partial [Cakile constricta]
 gi|345424228|gb|AEN85218.1| phytochrome A, partial [Cakile edentula]
 gi|345424254|gb|AEN85231.1| phytochrome A, partial [Cakile lanceolata]
 gi|345424264|gb|AEN85236.1| phytochrome A, partial [Cakile maritima]
          Length = 597

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/598 (56%), Positives = 442/598 (73%), Gaps = 14/598 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEW 777
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEW
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEW 597


>gi|345424212|gb|AEN85210.1| phytochrome A, partial [Cakile constricta]
          Length = 597

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/598 (56%), Positives = 442/598 (73%), Gaps = 14/598 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEW 777
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEW
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGGCSEW 597


>gi|89331079|emb|CAJ80906.1| phytochrome A [Conopholis alpina]
          Length = 605

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/606 (56%), Positives = 446/606 (73%), Gaps = 16/606 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQAL GG +  LCD
Sbjct: 3   KPFYAIIHRVTGSLIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQALRGGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV +EI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVSTEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V V+Q + L   L L  STLR+PH CHL YM NM SIASLVM+V+IN
Sbjct: 123 NKVRMICDCRASHVKVVQDENLPFDLTLCGSTLRAPHRCHLLYMENMNSIASLVMSVVIN 182

Query: 357 SKDS------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAM 404
             +               LWGL+VCH+TSPR++PFPLRYACEFLVQ F++ +  EL++  
Sbjct: 183 EGNEDGASSSSGPDKRKTLWGLLVCHNTSPRFVPFPLRYACEFLVQVFAIHVNKELELEN 242

Query: 405 QLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTES 464
           Q+ EKNILRTQ LLCD+LLRDAP  IV+QSP++MDLVKC GA L Y    + +G+TP++ 
Sbjct: 243 QMLEKNILRTQTLLCDLLLRDAPLGIVSQSPNVMDLVKCIGAVLLYKNTKYRLGLTPSDF 302

Query: 465 QLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHT 524
           Q++DI  WL   H D TGLSTDSL +AG+PGA  LG A+CGMA  RIT +D+LFWFRSHT
Sbjct: 303 QIRDIVSWLDEYHWDSTGLSTDSLYDAGFPGALALGDALCGMAAVRITDRDWLFWFRSHT 362

Query: 525 AKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDS 584
           A E++WGG KH P+ KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++
Sbjct: 363 AAEIQWGGMKHEPDEKDDGSKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNA 422

Query: 585 FQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWN 644
           F+E E  +   ++ + + N  ++ GV E+ +VA EMVRLIETA+ PIF VD  G +NGWN
Sbjct: 423 FKESEGRD---LEIHARLNELQIGGVREIEAVATEMVRLIETASVPIFAVDVDGLVNGWN 479

Query: 645 AKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQ 704
            K+A+LTGL  ++AMG   +  +V + S   V  ++  AL G+E++NV+ +++      +
Sbjct: 480 TKIADLTGLCVNKAMGSHFL-ALVEDSSADTVSKMLELALQGKEEQNVQFEIKTHGQNSE 538

Query: 705 HSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPP 764
              + ++VNAC SRD K NV GVCF+ QDIT +K +MDKF R++GDY AI+Q+ NPLIPP
Sbjct: 539 SGPITLMVNACASRDVKENVVGVCFIAQDITTQKSMMDKFTRIEGDYRAIVQNPNPLIPP 598

Query: 765 IFASDE 770
           IF +DE
Sbjct: 599 IFGTDE 604


>gi|345424250|gb|AEN85229.1| phytochrome A, partial [Cakile lanceolata]
          Length = 598

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/599 (56%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCD +V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDMMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424266|gb|AEN85237.1| phytochrome A, partial [Cakile maritima]
          Length = 597

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/598 (56%), Positives = 442/598 (73%), Gaps = 14/598 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALSYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEW 777
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEW
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEW 597


>gi|89331083|emb|CAJ80908.1| phytochrome A [Cordylanthus ramosus]
          Length = 609

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/607 (56%), Positives = 444/607 (73%), Gaps = 14/607 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQALP G +  LCD
Sbjct: 3   KPFYAIIHRVTGSMIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQALPSGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV+SEI +  L+PY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVLSEITKPGLDPYVGLHYPATDIPQAARFLFIK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  STLR+PH CHLQYM +M SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVKVIQDNNLPFDLTLCGSTLRAPHSCHLQYMESMNSIASLVMSVVVN 182

Query: 357 SKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAM 404
             +              +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  
Sbjct: 183 EGNEDGPDSSSHPDKKKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEIELEN 242

Query: 405 QLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTES 464
           Q+ EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDGA L +  + + +G+TP++ 
Sbjct: 243 QMLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGAVLIHKSKKYRLGMTPSDF 302

Query: 465 QLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHT 524
           Q++DI  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  RIT  D+LFWFRSHT
Sbjct: 303 QIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRITDTDWLFWFRSHT 362

Query: 525 AKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDS 584
           A E++WGGAKH P  KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R+S
Sbjct: 363 ASEIRWGGAKHEPSDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNS 422

Query: 585 F-QEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGW 643
             +E EE +    + + + N  ++ G  EL ++  EMVRLIETA+ PIF VD  G +NGW
Sbjct: 423 SNKEAEERDVGGKEIHARLNDLQLDGKQELEALTSEMVRLIETASVPIFAVDMDGLVNGW 482

Query: 644 NAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQK 703
           N K+A+LTGL   +A+G  L+  +V + S  AV  ++  AL G E++NV+  ++    + 
Sbjct: 483 NTKIADLTGLLVDKAIGMHLL-ALVEDSSAEAVNKMLELALQGNEEQNVQFDIKTHGPRS 541

Query: 704 QHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIP 763
           +   + ++VNAC SRD K NV GVCF+ QDIT +K +MDKF R++GDY AI+Q+ N LIP
Sbjct: 542 ESGPISLIVNACASRDVKENVVGVCFIAQDITTQKSMMDKFTRIEGDYRAIVQNPNQLIP 601

Query: 764 PIFASDE 770
           PIF SDE
Sbjct: 602 PIFGSDE 608


>gi|89331055|emb|CAJ80894.1| phytochrome A [Castilleja crista-galli]
          Length = 609

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/609 (55%), Positives = 446/609 (73%), Gaps = 18/609 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQALP G +  LCD
Sbjct: 3   KPFYAIIHRVTGSMIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQALPNGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV+SEI +  L+PY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVLSEITKPGLDPYVGLHYPATDIPQAARFLFIK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  S LR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVKVIQDDNLPFDLTLCGSNLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAM 404
             +              +LWGLVVCH+TSPR+IPFPLRYACEFL Q F++ +  E+++  
Sbjct: 183 EGNEDGPDSSSHPDKKKQLWGLVVCHNTSPRFIPFPLRYACEFLAQVFAIHVNKEIELEN 242

Query: 405 QLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTES 464
           Q+ EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDGA L +  + + +G+TP++ 
Sbjct: 243 QMLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGAILIHKTKKYRLGMTPSDF 302

Query: 465 QLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHT 524
           Q++DI  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  RIT  D+LFWFRSHT
Sbjct: 303 QIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRITDTDWLFWFRSHT 362

Query: 525 AKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDS 584
           A  ++WGGAKH P+ KD+G KMHPRSSFKAFL+VVK RS PW+  E++AIHSLQ+++R+S
Sbjct: 363 ASAIRWGGAKHEPDDKDDGRKMHPRSSFKAFLDVVKTRSLPWKDFEMDAIHSLQLILRNS 422

Query: 585 FQEMEEENDSKVQG---NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTIN 641
             +  E+ D  V+G   + + N  ++ G  EL +V  EMVRLIETA+ PIF VD  G +N
Sbjct: 423 SNKEAEKRD--VEGKEIHARLNDLQLDGKKELEAVTSEMVRLIETASVPIFAVDVDGHVN 480

Query: 642 GWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFEL 701
           GWN K+A+LTGLP  +A+G+  +  +V + S  AV  ++  AL G E++NV+ +++    
Sbjct: 481 GWNTKIADLTGLPVDKAIGRHFL-ALVEDSSAEAVNKMLELALQGNEEQNVQFEIKTHGP 539

Query: 702 QKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPL 761
           + +   + ++VNAC SRD K NV GVCF+ QD+T +K +MDKF R++GDY AI+Q+ N L
Sbjct: 540 RSESHPISLIVNACASRDVKENVVGVCFIAQDVTTQKSMMDKFTRIEGDYRAIVQNPNQL 599

Query: 762 IPPIFASDE 770
           IPPIF +DE
Sbjct: 600 IPPIFGTDE 608


>gi|89330094|emb|CAJ80959.1| phytochrome A [Pedicularis densispica]
          Length = 612

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/610 (55%), Positives = 445/610 (72%), Gaps = 17/610 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   +++D EP K  D  ++ AGA+QS KLA  AI+RLQAL  G +  LCD
Sbjct: 3   KPFYAIVHRVTGSLIVDFEPVKPHDVPMTAAGALQSYKLAAKAITRLQALSSGSLERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+ ++V +LTGYDRVM+Y FH+DDHGEV+SEI +  LEPYLG+H+PA DIPQAARFLF +
Sbjct: 63  TMSQEVFELTGYDRVMIYKFHEDDHGEVLSEITKPGLEPYLGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  STLR+PH CHLQYM NM SIASLVM+V+IN
Sbjct: 123 NKVRMICDCRANHVRVIQDDNLHFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVIN 182

Query: 357 SKDS---------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQ 401
             +                 +LWGLVVCH+T+PR++PFPLRYACEFLVQ F++ +  E++
Sbjct: 183 EGNEDEPESSSSSSHPDKRKRLWGLVVCHNTTPRFVPFPLRYACEFLVQVFAIHVSKEIE 242

Query: 402 VAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTP 461
           +  Q  EKNILRTQ LLCD+LLRDAP  IV++SP++MDLVKC+GA L +  + + +G+TP
Sbjct: 243 LENQTLEKNILRTQTLLCDLLLRDAPLGIVSKSPNVMDLVKCNGAILIHKTKKYRLGMTP 302

Query: 462 TESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFR 521
           ++ Q++DI  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  RIT KD+LFWFR
Sbjct: 303 SDFQIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRITDKDWLFWFR 362

Query: 522 SHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVM 581
           SHTA E++WGGAKH P+ KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++
Sbjct: 363 SHTASEIRWGGAKHEPDDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLIL 422

Query: 582 RDSFQEMEEENDSKVQG-NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTI 640
           R++  +  E +D K +  + + NG ++ G+ EL +V  EMVRLIETA+ PIF V + G +
Sbjct: 423 RNASNKEAEASDVKGKEIHARLNGLQLDGMQELDAVTSEMVRLIETASVPIFAVGADGLV 482

Query: 641 NGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700
           NGWN K+A+LTGLP   A G   +  +V + S  AV+ ++  AL G E++NV+ + +   
Sbjct: 483 NGWNTKIADLTGLPVDRATGSHFV-SLVDDSSVEAVKKMLELALQGNEEQNVQFEFKTHG 541

Query: 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNP 760
            + +   V ++VNAC SRD K N+ GVCF+ QDIT +K +MDKF R++GDY AI+Q+ N 
Sbjct: 542 PRSESGPVSLVVNACASRDLKENIVGVCFIAQDITTQKSMMDKFTRIEGDYRAIVQNPNQ 601

Query: 761 LIPPIFASDE 770
           LIPPIF SDE
Sbjct: 602 LIPPIFGSDE 611


>gi|89330154|emb|CAJ80989.1| phytochrome A [Triphysaria pusilla]
          Length = 609

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/609 (56%), Positives = 443/609 (72%), Gaps = 18/609 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQALP G +  LCD
Sbjct: 3   KPFYAIIHRVTGSMIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQALPSGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV+SEI +  L+ Y G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVLSEITKPGLDSYAGLHYPATDIPQAARFLFIK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVKVIQDDNLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAM 404
             D              +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  
Sbjct: 183 EGDEDGPNSSSHPDKKKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEIELEN 242

Query: 405 QLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTES 464
           Q+ EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDGA L +  + + +G+TP++ 
Sbjct: 243 QMLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGAVLIHKTKKYRLGMTPSDF 302

Query: 465 QLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHT 524
           Q++DI  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  RIT  D+LFWFRSHT
Sbjct: 303 QIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRITDTDWLFWFRSHT 362

Query: 525 AKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDS 584
           A E++WGGAKH P+ KD+G KMHPRSSFKAFL+VVK RS PW+  E++AIHSLQ+++R+S
Sbjct: 363 ASEIRWGGAKHEPDDKDDGRKMHPRSSFKAFLDVVKTRSLPWKDFEMDAIHSLQLILRNS 422

Query: 585 FQEMEEENDSKVQG---NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTIN 641
             +  E+ D  V G   + + N  ++ G  EL +V  EMVRLIETA+ PIF VD  G +N
Sbjct: 423 SNKEAEKRD--VDGKEIHARLNDLQLDGKRELEAVTSEMVRLIETASVPIFAVDVDGLVN 480

Query: 642 GWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFEL 701
           GWN K+A+LTGLP  +A+GK  +  +V +    AV  ++  AL G E++NV+ +++    
Sbjct: 481 GWNTKIADLTGLPVDKAIGKHFL-ALVEDSFAEAVNKMLGSALQGNEEQNVQFEIKTHGP 539

Query: 702 QKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPL 761
           +   + + ++VNAC SRD K NV GVCF+ QDIT +  +MDKF R++GDY AI+Q+ N L
Sbjct: 540 KSDSNPISLIVNACASRDVKENVVGVCFIAQDITTQISMMDKFTRIEGDYRAIVQNPNQL 599

Query: 762 IPPIFASDE 770
           IPPIF SDE
Sbjct: 600 IPPIFGSDE 608


>gi|345424244|gb|AEN85226.1| phytochrome A, partial [Cakile lanceolata]
          Length = 598

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/599 (56%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL   E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALERTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424200|gb|AEN85204.1| phytochrome A, partial [Cakile arctica]
          Length = 597

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/598 (56%), Positives = 441/598 (73%), Gaps = 14/598 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEW 777
              NV GVCFV  D+T +K +MDKF R++GDY+AI Q+ NPLIPPIF +DE   CSEW
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIFQNPNPLIPPIFGTDEFGWCSEW 597


>gi|345424360|gb|AEN85284.1| phytochrome A, partial [Eruca pinnatifida]
          Length = 599

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/600 (57%), Positives = 444/600 (74%), Gaps = 15/600 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGEAPDSTTAPQ 180

Query: 361 --MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLL 418
              +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LL
Sbjct: 181 KRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLL 240

Query: 419 CDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHG 478
           CDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H 
Sbjct: 241 CDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPSDYHLQEIASWLCEYHT 300

Query: 479 DCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPE 538
           D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+
Sbjct: 301 DSTGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPD 360

Query: 539 HKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG 598
            +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F+E E  + +    
Sbjct: 361 DRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKEGETADMNTKII 420

Query: 599 NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEA 658
           +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA
Sbjct: 421 HSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEA 480

Query: 659 MGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSR 718
           +GK L+  +V + S G V+ ++  AL G E++NV+ +++    +     + ++VNAC SR
Sbjct: 481 IGKHLL-TLVEDSSVGIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASR 539

Query: 719 DYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
           D   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 DLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 599


>gi|89331069|emb|CAJ80901.1| phytochrome A [Castilleja fissifolia]
          Length = 609

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/609 (55%), Positives = 447/609 (73%), Gaps = 18/609 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQALP G +  LCD
Sbjct: 3   KPFYAIIHRVTGSMIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQALPNGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV+SEI +  L+PY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVLSEITKPGLDPYVGLHYPATDIPQAARFLFIK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  S  R+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVKVIQDDNLPFDLTLCGSNPRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAM 404
             +              +LWGLVVCH+TSPR+IPFPLRYACEFL Q F++ +  E+++  
Sbjct: 183 EGNEDGPDSSSHPDKKKQLWGLVVCHNTSPRFIPFPLRYACEFLAQVFTIHVNKEIELEN 242

Query: 405 QLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTES 464
           Q+ EKNILRTQ LLCDMLLRDAP  IV++SP++MDLVKCDGA L +  + + +G+TP++ 
Sbjct: 243 QMLEKNILRTQTLLCDMLLRDAPLGIVSRSPNVMDLVKCDGAVLIHKTKKYRLGMTPSDF 302

Query: 465 QLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHT 524
           Q++DI  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  RIT  D+LFWFRSHT
Sbjct: 303 QIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRITDTDWLFWFRSHT 362

Query: 525 AKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDS 584
           A E++WGGAKH P+ KD+G KMHPRSSFKAFL+VVK RS PW+  E++AIHSL++++R+S
Sbjct: 363 ASEIRWGGAKHEPDDKDDGRKMHPRSSFKAFLDVVKTRSLPWKDFEMDAIHSLRLILRNS 422

Query: 585 FQEMEEENDSKVQG---NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTIN 641
             +  E+ D  V+G   + + N  ++ G  EL +V  EMVRLIETA+ PIF VD  G +N
Sbjct: 423 SNKEAEKRD--VEGKEIHARLNDLQLDGKKELETVTSEMVRLIETASVPIFAVDVDGHVN 480

Query: 642 GWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFEL 701
           GWN K+A+LTGLP  +A+G+  +  +V + S  AV  ++  AL G E++NV+ +++    
Sbjct: 481 GWNTKIADLTGLPVDKAIGRHFL-ALVEDSSAEAVNKMLELALQGNEEQNVQFEIKTHGP 539

Query: 702 QKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPL 761
           + +   + ++VNACTSRD K NV GVCF+ QDIT +K +MDKF R++GDY AI+Q+ N L
Sbjct: 540 RSESHPISLIVNACTSRDVKENVVGVCFIAQDITTQKSMMDKFTRIEGDYRAIVQNPNQL 599

Query: 762 IPPIFASDE 770
           IPPIF +DE
Sbjct: 600 IPPIFGTDE 608


>gi|345424512|gb|AEN85360.1| phytochrome A, partial [Morisia monanthos]
          Length = 598

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/599 (56%), Positives = 445/599 (74%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   + L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSSDITLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDASDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPSDYHLQEIALWLCECHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 RDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETTDVNTKTIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G++NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGSVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC S+D
Sbjct: 481 GKHLL-TIVEDSSVDIVKRMLENALEGTEEQNVQFEIKTHLSRTDAGPISLVVNACASKD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE+  CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTAQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDESGWCSEWN 598


>gi|345424204|gb|AEN85206.1| phytochrome A, partial [Cakile arctica]
 gi|345424232|gb|AEN85220.1| phytochrome A, partial [Cakile edentula]
 gi|345424236|gb|AEN85222.1| phytochrome A, partial [Cakile edentula]
 gi|345424240|gb|AEN85224.1| phytochrome A, partial [Cakile edentula]
          Length = 598

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/599 (56%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGL   EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLRVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424226|gb|AEN85217.1| phytochrome A, partial [Cakile edentula]
          Length = 596

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/597 (56%), Positives = 441/597 (73%), Gaps = 14/597 (2%)

Query: 195 EPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLY 254
           EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM Y
Sbjct: 1   EPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAY 60

Query: 255 NFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314
            FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V+Q
Sbjct: 61  KFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRVLQ 120

Query: 315 SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS-------------M 361
            ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D               
Sbjct: 121 DEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQKRK 180

Query: 362 KLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDM 421
           +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLCDM
Sbjct: 181 RLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLCDM 240

Query: 422 LLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCT 481
           L+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D T
Sbjct: 241 LMRDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLQEIASWLCEYHTDST 300

Query: 482 GLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKD 541
           GLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ KD
Sbjct: 301 GLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDDKD 360

Query: 542 NGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQ 601
           +  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +++
Sbjct: 361 DARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIHSK 420

Query: 602 QNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGK 661
            N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+GK
Sbjct: 421 LNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAIGK 480

Query: 662 SLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYK 721
            L+  +  + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD  
Sbjct: 481 HLL-TLAEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRDLH 539

Query: 722 NNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
            NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 ENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 596


>gi|345424516|gb|AEN85362.1| phytochrome A, partial [Morisia monanthos]
          Length = 598

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/599 (56%), Positives = 445/599 (74%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   + L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSSDITLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDASDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPSDYHLQEIALWLCECHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 RDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETTDVNTKTIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G++NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGSVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC S+D
Sbjct: 481 GKHLL-TIVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRTDAGPISLVVNACASKD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE+  CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTAQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDESGWCSEWN 598


>gi|89330096|emb|CAJ80960.1| phytochrome A [Pedicularis foliosa]
          Length = 611

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/609 (56%), Positives = 442/609 (72%), Gaps = 16/609 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   +++D EP K  +  ++ AGA+QS KLA  AI+RLQALP G +  LCD
Sbjct: 3   KPFYAIIHRVTGSLIVDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQALPSGSLERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV+SEI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVLSEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVRVIQDDNLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKD--------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402
             +                +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E ++
Sbjct: 183 EGNEDGPDSSSSSHPDKKKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEFEL 242

Query: 403 AMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPT 462
             Q  EKNILRTQ LLCDMLLRDAP  IV++SP++MDLVKC+GA L +  + + +G+TP+
Sbjct: 243 ENQTLEKNILRTQTLLCDMLLRDAPLGIVSKSPNVMDLVKCNGAILIHKTKKYRLGMTPS 302

Query: 463 ESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRS 522
           + Q++DI  WL   H D TGLSTDSL +AG PGA  LG AVCGMA  RIT +D+LFWFRS
Sbjct: 303 DFQIRDIVSWLDEYHRDSTGLSTDSLYDAGLPGALALGDAVCGMAAVRITDEDWLFWFRS 362

Query: 523 HTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMR 582
           HTA E++WGGAKH P  KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+V+R
Sbjct: 363 HTAAEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLVLR 422

Query: 583 D-SFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTIN 641
           + S +E EE + +  + +   N  ++ G+ EL +V  EMVRLIETA+ PIF V   G +N
Sbjct: 423 NASNKEAEERDTNGKEIHAGLNDLQLDGIQELEAVTSEMVRLIETASVPIFAVGVDGLVN 482

Query: 642 GWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFEL 701
           GWN K+A+LTGLP  +AMG   +  +V + S  AV  ++  AL G E++NV+ + +    
Sbjct: 483 GWNTKIADLTGLPVDKAMGSHFV-ALVDDSSAEAVNRMLELALQGNEEQNVQFEFKTHGP 541

Query: 702 QKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPL 761
           + +   V ++VNAC SRD K N+ GVCF+ QDIT +K +MDKF R++GDY AI+Q+ N L
Sbjct: 542 RSESGPVSLVVNACASRDVKENIVGVCFIAQDITTQKSMMDKFTRIEGDYRAIVQNPNQL 601

Query: 762 IPPIFASDE 770
           IPPIF +DE
Sbjct: 602 IPPIFGTDE 610


>gi|89330118|emb|CAJ80971.1| phytochrome A [Rhinanthus glacialis]
          Length = 614

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/610 (55%), Positives = 445/610 (72%), Gaps = 17/610 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQAL GG I  LC+
Sbjct: 3   KPFYAIIHRVTASLIIDFEPVKPHEVPMTAAGALQSYKLASKAIARLQALSGGSIERLCE 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM Y FH+DDHGEV++EI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMTYKFHEDDHGEVLTEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ + L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVRVIQDENLPMDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKDS--------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402
             +                +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E ++
Sbjct: 183 EGNEEAAPDETPQQLDKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKETEM 242

Query: 403 AMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPT 462
             Q+ EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDG+ L +  + + +G+TP+
Sbjct: 243 ENQMLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGSILLHKNQKYRLGITPS 302

Query: 463 ESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRS 522
           + Q++DI  WL   H D TGLSTDSL +AG+PGA  LG  VCGMA  RIT +D+LFWFRS
Sbjct: 303 DFQIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDVVCGMAAVRITDRDWLFWFRS 362

Query: 523 HTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMR 582
           HTA E++WGGAKH    +D+G KMHPRSSFKAFLEVVK RS PW+  E++A HSLQ+++R
Sbjct: 363 HTASEIRWGGAKHELGERDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDATHSLQLILR 422

Query: 583 D-SFQEMEEENDSK-VQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTI 640
           + S +EMEE  D + V+   + N  ++ GV EL +V  EMVRLIETA+ PIF V   G +
Sbjct: 423 NASSKEMEERKDLEGVEIQARLNELQIDGVQELEAVTSEMVRLIETASVPIFAVGVDGLV 482

Query: 641 NGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700
           NGWN K+A+LTGLP  +A+G   +  +V E S  AV  ++  AL G+E++NV  +++   
Sbjct: 483 NGWNTKIADLTGLPVDKAIGLHFL-SLVEESSAEAVSKMLELALEGKEEQNVHFEIKTHG 541

Query: 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNP 760
                S + ++VNAC SRD++ NV GVCF+ QDIT +K +MDKF R++GDY AI+Q+ NP
Sbjct: 542 PNSDSSPISLIVNACASRDFRENVVGVCFIAQDITTQKSVMDKFTRIEGDYRAIVQNPNP 601

Query: 761 LIPPIFASDE 770
           +IPPIF +DE
Sbjct: 602 VIPPIFGTDE 611


>gi|345424348|gb|AEN85278.1| phytochrome A, partial [Diplotaxis harra]
 gi|345424350|gb|AEN85279.1| phytochrome A, partial [Diplotaxis harra]
          Length = 599

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/600 (57%), Positives = 443/600 (73%), Gaps = 15/600 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTAPQ 180

Query: 361 --MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLL 418
              +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LL
Sbjct: 181 KRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLL 240

Query: 419 CDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHG 478
           CDML+RDAP  IVTQSP+IMDLVKCDGAAL Y  + W +G+TP+E  L++IA WL   H 
Sbjct: 241 CDMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKDKVWKLGITPSEYHLQEIASWLCEYHT 300

Query: 479 DCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPE 538
           D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+
Sbjct: 301 DSTGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPD 360

Query: 539 HKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG 598
            +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F+E E  + +    
Sbjct: 361 DRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKEGEPTDVNANII 420

Query: 599 NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEA 658
           +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA
Sbjct: 421 HSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEA 480

Query: 659 MGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSR 718
           +GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SR
Sbjct: 481 IGKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASR 539

Query: 719 DYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
           D   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 DLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 599


>gi|345424286|gb|AEN85247.1| phytochrome A, partial [Coincya monensis]
          Length = 599

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/600 (56%), Positives = 439/600 (73%), Gaps = 15/600 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI RLQ+L  G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAIIRLQSLSSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAAPDSTAPQ 180

Query: 361 --MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLL 418
              +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LL
Sbjct: 181 KRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLL 240

Query: 419 CDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHG 478
           CDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP+E  L +IA WL  +H 
Sbjct: 241 CDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKAWKLGITPSEFHLHEIASWLCESHT 300

Query: 479 DCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPE 538
           D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+
Sbjct: 301 DSTGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPD 360

Query: 539 HKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG 598
            KD+  +MHPRSSFKA LEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    
Sbjct: 361 DKDDARRMHPRSSFKALLEVVKTRSLPWKDYEMDAIHSLQLILRNAFRDGETTDVNTKII 420

Query: 599 NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEA 658
           +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELT LP  EA
Sbjct: 421 HSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTDLPVDEA 480

Query: 659 MGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSR 718
           +GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SR
Sbjct: 481 IGKHLL-TLVEDSSVEIVKRMLENALDGTEEQNVQFEIKTHLSRADAGPISLVVNACASR 539

Query: 719 DYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
           D   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 DLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 599


>gi|89331137|emb|CAJ80935.1| phytochrome A [Lindenbergia philippensis]
          Length = 609

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/608 (55%), Positives = 443/608 (72%), Gaps = 16/608 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   +VID EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCD
Sbjct: 3   KPFYAIIHRVTGSLVIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDD GEV++EI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDRGEVLTEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC AI V V+Q   L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRAINVKVVQDGNLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKDS--------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402
             D                +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++
Sbjct: 183 EGDEEASTPDSSLHPDKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHINKEVEL 242

Query: 403 AMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPT 462
             Q+ EKNIL+TQ LLCDMLLRDAP  IV QSP+IMDLVKCDGA + Y  + +  G+ P 
Sbjct: 243 ENQMLEKNILKTQTLLCDMLLRDAPLGIVNQSPNIMDLVKCDGAMMLYKNQKYRFGLAPN 302

Query: 463 ESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRS 522
           + Q++D+  WL   HGD TGLSTDSL +AG+PGA  LG AVCGMA  RIT KD+LFWFRS
Sbjct: 303 DFQIRDLVSWLDAYHGDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRITDKDWLFWFRS 362

Query: 523 HTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMR 582
           HTA E++WGGAKH    KD+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R
Sbjct: 363 HTAAEIRWGGAKHERGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILR 422

Query: 583 DSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTING 642
           ++ +E ++++   ++ + + N  ++ G+ EL  V  EMVRLIETA+ PIF VD  G +NG
Sbjct: 423 NASREADKKDLEGMEIHARLNDLQIDGIQEL-EVTSEMVRLIETASVPIFAVDGDGLVNG 481

Query: 643 WNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQ 702
           WN K+A+L GLP  +A+G   +D +V + S   V  ++  A+ G E++NV+ +++    +
Sbjct: 482 WNTKIADLAGLPVEKAIGMHFLD-LVEDSSADTVGKMLKLAIQGVEERNVQFEIKTHGPR 540

Query: 703 KQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLI 762
              + + ++VNAC S+D K NV GVCF+ QDIT EK +MDKF R++GDY AIIQ+ NPLI
Sbjct: 541 SDSTPISLVVNACASKDVKENVVGVCFIAQDITTEKSVMDKFTRIEGDYRAIIQNPNPLI 600

Query: 763 PPIFASDE 770
           PPIF  DE
Sbjct: 601 PPIFGIDE 608


>gi|345424242|gb|AEN85225.1| phytochrome A, partial [Cakile edentula]
          Length = 598

 Score =  717 bits (1851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/599 (56%), Positives = 442/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAEHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGL   EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLRVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADVGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424500|gb|AEN85354.1| phytochrome A, partial [Kremeriella cordylocarpus]
          Length = 595

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/596 (57%), Positives = 444/596 (74%), Gaps = 11/596 (1%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS----------MK 362
           +Q ++L   L L  STLR+PH CHLQYM+NM SIASLVMAV++N +D+           +
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMSNMDSIASLVMAVVVNEEDADDSTTQTQKRKR 180

Query: 363 LWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDML 422
           LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLCDML
Sbjct: 181 LWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLCDML 240

Query: 423 LRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTG 482
           +RDAP  IV+QSP++MDLVKCDGAAL Y  + W +G+TP+E  L++IA WL   H D TG
Sbjct: 241 MRDAPLGIVSQSPNVMDLVKCDGAALLYKDKVWKLGITPSEFHLQEIASWLCEYHTDSTG 300

Query: 483 LSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDN 542
           LSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+ +D+
Sbjct: 301 LSTDSLHDAGFPRALALGDSVCGMAAVRISSKDVIFWFRSHTAGEVRWGGAKHDPDDRDD 360

Query: 543 GGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQ 602
             +MHPRSSFKAFLEVVK RS PW+  E++A+HSLQ+++R++F++ E  + +     ++ 
Sbjct: 361 ARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAVHSLQLILRNAFKDGETTDVNTKIIYSKL 420

Query: 603 NGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKS 662
           N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+GK 
Sbjct: 421 NDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAIGKH 480

Query: 663 LIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKN 722
           L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD   
Sbjct: 481 LL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRDLHE 539

Query: 723 NVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
           NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 NVAGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 595


>gi|89331063|emb|CAJ80898.1| phytochrome A [Castilleja miniata]
          Length = 609

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/609 (55%), Positives = 445/609 (73%), Gaps = 18/609 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQALP G +  LCD
Sbjct: 3   KPFYAIIHRVTGSMIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQALPNGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV+SEI +  L+PY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVLSEITKPGLDPYVGLHYPATDIPQAARFLFIK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  S LR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVKVIQDDNLPFDLTLCGSNLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKD------------SMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAM 404
             +              +LWGLVVCH+TSPR+IPFPLRYACEFL Q F++ +  E+++  
Sbjct: 183 EGNEDGPNSSSHPDKKKQLWGLVVCHNTSPRFIPFPLRYACEFLAQVFAIHVNKEIELEN 242

Query: 405 QLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTES 464
           Q+ EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDGA L +  + + +G+TP++ 
Sbjct: 243 QMLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGAILIHKTKKYRLGMTPSDF 302

Query: 465 QLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHT 524
           Q++DI  WL   H D TGLSTDSL +AG+PGA  LG AVCGMA  RIT  D+LFWFRSHT
Sbjct: 303 QIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDAVCGMAAVRITDTDWLFWFRSHT 362

Query: 525 AKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDS 584
           A  ++WGGAKH P+ KD+G KMHPRSSFKAFL+VVK RS  W+  E++AIHSLQ+++R+S
Sbjct: 363 ASTIRWGGAKHEPDDKDDGRKMHPRSSFKAFLDVVKTRSLSWKDFEMDAIHSLQLILRNS 422

Query: 585 FQEMEEENDSKVQG---NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTIN 641
             +  E+ D  V+G   + + N  ++ G  EL +V  EMVRLIETA+ PIF VD  G +N
Sbjct: 423 SSKEAEKGD--VEGKEIHARLNDLQLDGKKELEAVTSEMVRLIETASVPIFAVDVDGHVN 480

Query: 642 GWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFEL 701
           GWN K+A+LTGLP  +A+G+  +  +V + S  AV  ++  AL G E++NV+ +++    
Sbjct: 481 GWNTKIADLTGLPVDKAIGRHFL-ALVEDSSAEAVNKMLELALQGNEEQNVQFEIKTHGP 539

Query: 702 QKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPL 761
           + +   + ++VNAC SRD K NV GVCF+ QDIT +K +MDKF R++GDY AI+Q+ N L
Sbjct: 540 RSESHPISLIVNACASRDVKENVVGVCFIAQDITTQKSMMDKFTRIEGDYRAIVQNPNQL 599

Query: 762 IPPIFASDE 770
           IPPIF +DE
Sbjct: 600 IPPIFGTDE 608


>gi|345424168|gb|AEN85188.1| phytochrome A, partial [Brassica nigra]
          Length = 599

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/600 (57%), Positives = 443/600 (73%), Gaps = 15/600 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSSDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTTAPQ 180

Query: 361 --MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLL 418
              +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LL
Sbjct: 181 KRKRLWGLVVCHNTSPRFVPFPLRYACEFLTQVFAIHVNKEVELENQIVEKNILRTQTLL 240

Query: 419 CDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHG 478
           CDML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP+E  L++IA WL   H 
Sbjct: 241 CDMLMRDAPLGIISQSPNIMDLVKCDGAALLYKDKVWKLGITPSEFHLQEIASWLCEYHT 300

Query: 479 DCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPE 538
           D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+
Sbjct: 301 DSTGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPD 360

Query: 539 HKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG 598
            +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    
Sbjct: 361 DRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETTDVNTKII 420

Query: 599 NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEA 658
           +++ N  K+ GV EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA
Sbjct: 421 HSKLNDLKIDGVQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEA 480

Query: 659 MGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSR 718
           +GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SR
Sbjct: 481 IGKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASR 539

Query: 719 DYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
           D   NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 DLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 599


>gi|345424514|gb|AEN85361.1| phytochrome A, partial [Morisia monanthos]
          Length = 599

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/600 (56%), Positives = 443/600 (73%), Gaps = 15/600 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q  +L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDDKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEAAPDSSTTQPQ 180

Query: 361 --MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLL 418
              +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LL
Sbjct: 181 KRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLL 240

Query: 419 CDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHG 478
           CDML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H 
Sbjct: 241 CDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPSDYHLQEIALWLCECHT 300

Query: 479 DCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPE 538
           D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+
Sbjct: 301 DSTGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPD 360

Query: 539 HKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG 598
            +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    
Sbjct: 361 DRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETTDVNTKTI 420

Query: 599 NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEA 658
           +++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G++NGWN K+AELTGLP  EA
Sbjct: 421 HSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGSVNGWNTKIAELTGLPVDEA 480

Query: 659 MGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSR 718
           +GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SR
Sbjct: 481 IGKHLL-TIVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASR 539

Query: 719 DYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
           D   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 DLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 599


>gi|345424372|gb|AEN85290.1| phytochrome A, partial [Eruca vesicaria]
          Length = 592

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/595 (57%), Positives = 437/595 (73%), Gaps = 12/595 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVKV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS---------MKL 363
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D           +L
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDEPESATPQKRKRL 180

Query: 364 WGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLL 423
           WGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLCDML+
Sbjct: 181 WGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVEMENQIVEKNILRTQTLLCDMLM 240

Query: 424 RDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGL 483
           RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G TP+E  L++IA WL   H D TGL
Sbjct: 241 RDAPLGIVSQSPNIMDLVKCDGAALLYKEKVWKLGTTPSEFHLQEIASWLCEYHTDSTGL 300

Query: 484 STDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNG 543
           STDSL +AG+P    LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+ KD+ 
Sbjct: 301 STDSLHDAGFPRD--LGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPDDKDDA 358

Query: 544 GKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQN 603
            +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F+E E  + +    +++ N
Sbjct: 359 RRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKEGETTDVNTKIIHSKLN 418

Query: 604 GSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL 663
             K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGL    A+GK L
Sbjct: 419 DLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLSVDGAIGKHL 478

Query: 664 IDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNN 723
           +  +V + S   V+ ++  AL G E++NV+  ++    +     +  +VNAC SRD   N
Sbjct: 479 L-TLVEDSSVEVVKRMLENALEGTEEQNVQFDIKTHLSRTDAGPISFVVNACASRDLHEN 537

Query: 724 VKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
           V GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 538 VVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 592


>gi|345424248|gb|AEN85228.1| phytochrome A, partial [Cakile lanceolata]
          Length = 598

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/599 (56%), Positives = 441/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  S LR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSALRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+ DAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMCDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|345424272|gb|AEN85240.1| phytochrome A, partial [Cakile maritima]
          Length = 597

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/598 (56%), Positives = 441/598 (73%), Gaps = 14/598 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  I++QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIISQSPNIMDLVKCDGAALLYKEKVWKLGITPSDFHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+S+D +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSRDTIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           KD+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 KDDARRMHPRSSFKAFLEVVKTRSSPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  ++ G+ EL +V  EMVRLIETAT PI  VDS G INGWN K+AELTGL   EA+
Sbjct: 421 SKLNDLQIDGIQELEAVTSEMVRLIETATVPILAVDSDGLINGWNTKIAELTGLRVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVEIVKRMLDNALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEW 777
              NV GVCFV  D+T +K +MDKF R++GDY+AI+Q+ NPLIPPIF +DE   CSEW
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCSEW 597


>gi|345424506|gb|AEN85357.1| phytochrome A, partial [Moricandia arvensis]
          Length = 598

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/599 (57%), Positives = 443/599 (73%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  IVTQSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIVTQSPNIMDLVKCDGAALLYKDKVWRLGITPSDFHLQEIASWLSEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 RDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETADMNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SRD
Sbjct: 481 GKHLL-TLVEDSSVERVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASRD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|89331047|emb|CAJ80890.1| phytochrome A [Boschniakia strobilacea]
          Length = 608

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/606 (55%), Positives = 441/606 (72%), Gaps = 13/606 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AI+RLQALPGG +  LCD
Sbjct: 3   KPFYAIIHRVTGSLIIDFEPVKPHEVPMTAAGALQSYKLAAKAITRLQALPGGSMERLCD 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FHDDDHGEV +EI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHDDDHGEVSTEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V V+Q + L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVKVVQDENLSFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 S-----------KDSMK-LWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAM 404
                        D  K LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E ++  
Sbjct: 183 EGNEDGPDSSSVPDKRKTLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIYVNKEFELEN 242

Query: 405 QLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTES 464
           Q+ EKNILRTQ LLCD+LLRDAP  IV+QSP++MD VKCDGA L Y    + +G+TP++ 
Sbjct: 243 QMLEKNILRTQTLLCDLLLRDAPLGIVSQSPNVMDPVKCDGAVLLYKNTKYRLGLTPSDF 302

Query: 465 QLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHT 524
           Q++DI  WL   H D TGLSTDSL +AG+PGA  L  AVCGM   RIT +D+LFWFRSHT
Sbjct: 303 QIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALSLCDAVCGMVAVRITERDWLFWFRSHT 362

Query: 525 AKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDS 584
           A E++WGGAKH P   D+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++
Sbjct: 363 AAEIQWGGAKHEPGETDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNA 422

Query: 585 FQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWN 644
           F+E E  +    + + + +  ++ GV E+ +V  EMVRLIETA+ PIF VD  G +NGWN
Sbjct: 423 FKESEGRDSESREIHARLHDLQIDGVREIEAVTSEMVRLIETASVPIFAVDVDGLVNGWN 482

Query: 645 AKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQ 704
            K+A+LTGL   +A+G   +  +V + S   V  ++  AL G+E++NV+ +++      +
Sbjct: 483 TKIADLTGLCVDKAIGWHFL-ALVEDSSADTVSKMLELALQGKEEQNVQFEIKTHGQTSE 541

Query: 705 HSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPP 764
              + ++VNAC SRD K NV GVCF+ QDIT +K++MDKF R++GDY  I+Q+ NPLIPP
Sbjct: 542 SGPITLIVNACASRDVKENVVGVCFIAQDITTQKIMMDKFTRIEGDYRTIVQNPNPLIPP 601

Query: 765 IFASDE 770
           IF +DE
Sbjct: 602 IFGTDE 607


>gi|345424532|gb|AEN85370.1| phytochrome A, partial [Pseuderucaria teretifolia]
          Length = 598

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/599 (56%), Positives = 444/599 (74%), Gaps = 14/599 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ +  LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGEAPDSTAPQK 180

Query: 361 -MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLC 419
             +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LLC
Sbjct: 181 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLLC 240

Query: 420 DMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD 479
           DML+RDAP  IV+QSP+IMDLVKCDGAAL Y  + W +G+TP++  L++IA WL   H D
Sbjct: 241 DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKVWKLGITPSDYHLQEIASWLCEYHTD 300

Query: 480 CTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH 539
            TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EVKWGGAKH P+ 
Sbjct: 301 STGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAAEVKWGGAKHDPDD 360

Query: 540 KDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGN 599
           +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    +
Sbjct: 361 RDDARRMHPRSSFKAFLEVVKRRSLPWKDYEMDAIHSLQLILRNAFKDGETTDVNTKIIH 420

Query: 600 TQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAM 659
           ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA+
Sbjct: 421 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEAI 480

Query: 660 GKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRD 719
           GK L+  +V + S   V+ ++  AL G E++NV+ +++    + +   + ++VNAC S+D
Sbjct: 481 GKHLL-TLVEDSSVDIVKRMLENALEGTEEQNVQFEIKTHLSRTEAGPISLVVNACASKD 539

Query: 720 YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
              NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 LHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 598


>gi|89331099|emb|CAJ80916.1| phytochrome A [Euphrasia collina]
          Length = 621

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/618 (55%), Positives = 444/618 (71%), Gaps = 17/618 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+   ++ID EP K  +  ++ AGA+QS KLA  AISR Q+LP G +  LC+
Sbjct: 3   KPFYAIIHRVTASLIIDFEPVKPHEVPMTAAGALQSYKLASKAISRFQSLPSGSMERLCE 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM+Y FH+DDHGEV++EI +  LEPY+G+H+PA D+PQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMIYKFHEDDHGEVLTEITKPGLEPYVGLHYPATDVPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ   L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVRVIQDVNLPLDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKDS--------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402
             +                +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  EL++
Sbjct: 183 EGNEEAGPDNSSQHLDKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELEL 242

Query: 403 AMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPT 462
             Q+ EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDGA L +  +   +G+TP+
Sbjct: 243 ENQMLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGAILLHKNQKHRLGITPS 302

Query: 463 ESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRS 522
           + Q++DI  WL     D TGLSTDSL +AG+PGA  LG  VCGMA  +IT +D+LFWFRS
Sbjct: 303 DFQIRDIVSWLDEYRHDSTGLSTDSLYDAGFPGALSLGDNVCGMAAVKITDRDWLFWFRS 362

Query: 523 HTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMR 582
           HTA E++WGG+KH    +D+  KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R
Sbjct: 363 HTASEIRWGGSKHEQGERDDSRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILR 422

Query: 583 D-SFQEMEEEND-SKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTI 640
           + S +EM E  D   V+   + N  ++ GV EL +V  EMVRLIETA+ PIF V   G +
Sbjct: 423 NASSKEMGERKDLESVEIQARLNELQIDGVQELEAVTSEMVRLIETASVPIFAVGVDGLV 482

Query: 641 NGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700
           NGWN K+A LTGLP  +A+G   +  +V E S  AV  ++  AL G+E++NV  +++   
Sbjct: 483 NGWNTKIANLTGLPVDKAIGVHFL-SLVEESSAEAVSKMLELALEGKEEQNVHFEIKTHG 541

Query: 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNP 760
                S + ++VNAC SRD + NV GVCF+ QDIT +K +MDKF R++GDY AI+Q+ NP
Sbjct: 542 PNSDSSPISLIVNACASRDVRENVVGVCFIAQDITTQKSVMDKFTRIEGDYRAIVQNPNP 601

Query: 761 LIPPIFASDENACCSEWN 778
           +IPPIF +DE   CSEWN
Sbjct: 602 VIPPIFGTDEFGWCSEWN 619


>gi|345424496|gb|AEN85352.1| phytochrome A, partial [Kremeriella cordylocarpus]
 gi|345424498|gb|AEN85353.1| phytochrome A, partial [Kremeriella cordylocarpus]
 gi|345424504|gb|AEN85356.1| phytochrome A, partial [Kremeriella cordylocarpus]
          Length = 599

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/600 (56%), Positives = 443/600 (73%), Gaps = 15/600 (2%)

Query: 193 DLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVM 252
           D EP K  +  ++ AGA+QS KLA  AI+RLQ+LP G +  LCDT+V++V +LTGYDRVM
Sbjct: 1   DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM 60

Query: 253 LYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMV 312
            Y FHDDDHGEVVSE+ ++ LEPYLG+H+PA DIPQAARFLF +N+VRMI DC+A  V V
Sbjct: 61  AYKFHDDDHGEVVSEVTKTGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVRV 120

Query: 313 IQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDS------------ 360
           +Q ++L   L L  STLR+PH CHLQYM NM SIASLVMAV++N +D             
Sbjct: 121 LQDEKLSSDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAAPDSTAPQ 180

Query: 361 --MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLL 418
              +LWGLVVCH+T+PR++PFPLRYACEFL Q F++ +  E+++  Q+ EKNILRTQ LL
Sbjct: 181 KRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELENQIVEKNILRTQTLL 240

Query: 419 CDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHG 478
           CDML+RDAP  IV+QSP++MDLVKCDGAAL Y  + W +G+TP+E  L++IA WL   H 
Sbjct: 241 CDMLMRDAPLGIVSQSPNVMDLVKCDGAALLYKDKVWKLGITPSEFHLQEIASWLCEYHT 300

Query: 479 DCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPE 538
           D TGLSTDSL +AG+P A  LG +VCGMA  RI+SKD +FWFRSHTA EV+WGGAKH P+
Sbjct: 301 DSTGLSTDSLHDAGFPRALALGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPD 360

Query: 539 HKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQG 598
            +D+  +MHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R++F++ E  + +    
Sbjct: 361 DRDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDGETTDVNTKII 420

Query: 599 NTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEA 658
            ++ N  K+ G+ EL +V  EMVRLIETAT PI  VDS G +NGWN K+AELTGLP  EA
Sbjct: 421 YSKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLPVDEA 480

Query: 659 MGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNACTSR 718
           +GK L+  +V + S   V+ ++  AL G E++NV+ +++    +     + ++VNAC SR
Sbjct: 481 IGKHLL-TLVEDSSVEIVKRMLENALEGTEEQNVQFEIKTHLSRADAGPISLVVNACASR 539

Query: 719 DYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWN 778
           D   NV GVCFV  D+T +K +MDKF R++GDY+AIIQ+ NPLIPPIF +DE   CSEWN
Sbjct: 540 DLHENVVGVCFVAHDLTGQKTVMDKFTRIEGDYKAIIQNPNPLIPPIFGTDEFGWCSEWN 599


>gi|89330116|emb|CAJ80970.1| phytochrome A [Rhinanthus freynii]
          Length = 614

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/610 (55%), Positives = 443/610 (72%), Gaps = 17/610 (2%)

Query: 177 KPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236
           KPFYAI+HR+    +ID EP K  +  ++ AGA+QS KLA  AI+R QAL GG    LC+
Sbjct: 3   KPFYAIIHRVTASFIIDFEPVKPHEVPMTAAGALQSYKLASKAIARSQALSGGSTQRLCE 62

Query: 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296
           T+V++V +LTGYDRVM Y FH+DDHGEV++EI +  LEPY+G+H+PA DIPQAARFLF +
Sbjct: 63  TMVQEVFELTGYDRVMTYKFHEDDHGEVLTEITKPGLEPYVGLHYPATDIPQAARFLFMK 122

Query: 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN 356
           N+VRMICDC A  V VIQ + L   L L  STLR+PH CHLQYM NM SIASLVM+V++N
Sbjct: 123 NKVRMICDCRANHVRVIQDENLPMDLTLCGSTLRAPHSCHLQYMENMNSIASLVMSVVVN 182

Query: 357 SKDS--------------MKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQV 402
             +                +LWGLVVCH+TSPR++PFPLRYACEFL Q F++ +  E+++
Sbjct: 183 EGNEEAAPDETPQQLDKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEIEM 242

Query: 403 AMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPT 462
             Q+ EKNILRTQ LLCDMLLRDAP  IV+QSP++MDLVKCDG+ L +  + + +G+TP+
Sbjct: 243 ENQMLEKNILRTQTLLCDMLLRDAPLGIVSQSPNVMDLVKCDGSILLHKNQKYRLGITPS 302

Query: 463 ESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRS 522
           + Q++DI  WL   H D TGLSTDSL +AG+PGA  LG  VCGMA  RIT +D+LFWFRS
Sbjct: 303 DFQIRDIVSWLDEYHRDSTGLSTDSLYDAGFPGALALGDVVCGMAAVRITDRDWLFWFRS 362

Query: 523 HTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMR 582
           HTA E++WGGAKH    +D+G KMHPRSSFKAFLEVVK RS PW+  E++AIHSLQ+++R
Sbjct: 363 HTASEIRWGGAKHELGERDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILR 422

Query: 583 D-SFQEMEEEND-SKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTI 640
           + S +EMEE  D   V+   + N  ++ GV EL +V  EMVRLIETA+ PIF V   G +
Sbjct: 423 NASSKEMEERKDLEGVEIQARLNELQIDGVQELEAVTSEMVRLIETASVPIFAVGVDGLV 482

Query: 641 NGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700
           NGWN K+A+LTGLP  +A+G   +  +V E S  AV  ++  AL G+E++NV  +++   
Sbjct: 483 NGWNTKIADLTGLPVDKAIGLHFL-SLVEESSAEAVSKMLELALEGKEEQNVHFEIKTHG 541

Query: 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNP 760
                S + ++VNAC SRD++ NV GVCF+ QDIT +K +MDKF R++GDY AI+Q+ NP
Sbjct: 542 PNSDSSPISLIVNACASRDFRENVVGVCFIAQDITTQKSVMDKFTRIEGDYRAIVQNPNP 601

Query: 761 LIPPIFASDE 770
           +IPPIF +DE
Sbjct: 602 VIPPIFGTDE 611


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.136    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,939,162,725
Number of Sequences: 23463169
Number of extensions: 721815818
Number of successful extensions: 1688172
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5392
Number of HSP's successfully gapped in prelim test: 18831
Number of HSP's that attempted gapping in prelim test: 1646073
Number of HSP's gapped (non-prelim): 34780
length of query: 1093
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 939
effective length of database: 8,745,867,341
effective search space: 8212369433199
effective search space used: 8212369433199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 83 (36.6 bits)