Query 001353
Match_columns 1093
No_of_seqs 637 out of 3939
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 23:46:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001353.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001353hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eho_A Bacteriophytochrome, PA 100.0 5E-118 2E-122 1100.1 47.4 611 79-741 16-635 (635)
2 3zq5_A Phytochrome-like protei 100.0 1E-114 5E-119 1019.2 38.9 496 74-588 6-511 (520)
3 3nhq_A Bacteriophytochrome; ph 100.0 2E-111 8E-116 990.7 46.4 474 77-583 6-491 (505)
4 4e04_A Bacteriophytochrome (li 100.0 4.5E-82 1.5E-86 699.1 30.0 303 78-399 10-315 (327)
5 3s7o_A Bacteriophytochrome; bi 100.0 1.1E-81 3.9E-86 696.5 28.1 298 78-402 33-336 (343)
6 2ool_A Sensor protein; bacteri 100.0 1.7E-78 6E-83 679.6 32.5 303 79-400 24-329 (337)
7 3a0r_A Sensor protein; four he 100.0 3.3E-42 1.1E-46 395.1 22.9 340 614-1089 4-348 (349)
8 4glq_A Methyl-accepting chemot 100.0 1.4E-34 4.7E-39 297.6 17.3 151 220-398 3-154 (171)
9 2c2a_A Sensor histidine kinase 100.0 2.1E-33 7.1E-38 308.6 27.2 224 856-1089 14-251 (258)
10 4fpp_A Phosphotransferase; fou 100.0 1.4E-31 4.8E-36 292.4 23.2 227 828-1084 17-246 (247)
11 4ew8_A Sensor protein DIVL; si 100.0 2.3E-30 7.8E-35 285.7 30.9 223 855-1089 33-259 (268)
12 3jz3_A Sensor protein QSEC; he 100.0 1.3E-30 4.3E-35 278.8 11.8 212 862-1089 2-220 (222)
13 3d36_A Sporulation kinase B; G 100.0 1.3E-28 4.3E-33 267.2 24.3 211 861-1089 13-228 (244)
14 1gkz_A [3-methyl-2-oxobutanoat 100.0 1.2E-28 4E-33 287.5 25.1 216 860-1090 119-377 (388)
15 2btz_A Pyruvate dehydrogenase 100.0 1.6E-27 5.3E-32 278.5 26.1 210 864-1087 97-351 (394)
16 2e0a_A Pyruvate dehydrogenase 100.0 2.4E-27 8.3E-32 276.8 27.0 209 864-1087 97-351 (394)
17 2k2n_A Sensor protein, SYB-CPH 100.0 3.6E-28 1.2E-32 249.9 16.0 164 231-398 1-167 (172)
18 2q8g_A [pyruvate dehydrogenase 100.0 3.9E-27 1.3E-31 276.2 26.2 209 864-1087 108-364 (407)
19 1y8o_A [pyruvate dehydrogenase 99.9 1.6E-26 5.4E-31 271.9 23.2 209 864-1087 120-375 (419)
20 2lb5_A Sensor histidine kinase 99.9 8.1E-27 2.8E-31 247.3 17.2 182 211-398 13-197 (208)
21 3ewk_A Sensor protein; PAS dom 99.9 3E-23 1E-27 222.8 25.2 199 630-840 1-227 (227)
22 3a0y_A Sensor protein; ATP-LID 99.9 1.1E-22 3.8E-27 203.7 19.9 148 930-1089 2-151 (152)
23 1b3q_A Protein (chemotaxis pro 99.9 3.8E-23 1.3E-27 239.6 17.9 195 861-1088 9-250 (379)
24 3ehh_A Sensor kinase (YOCF pro 99.9 2.3E-22 7.8E-27 214.4 21.1 189 860-1087 26-217 (218)
25 1id0_A PHOQ histidine kinase; 99.9 4.9E-22 1.7E-26 199.2 20.0 144 932-1090 2-149 (152)
26 1ysr_A Sensor-type histidine k 99.9 6.2E-22 2.1E-26 198.3 19.2 141 930-1086 4-149 (150)
27 1r62_A Nitrogen regulation pro 99.9 6.7E-22 2.3E-26 199.7 15.8 156 928-1086 2-159 (160)
28 3sl2_A Sensor histidine kinase 99.9 5.1E-21 1.8E-25 197.3 18.2 145 933-1090 2-156 (177)
29 1bxd_A ENVZ(290-450), protein 99.9 4.8E-21 1.6E-25 194.3 16.6 146 928-1091 4-155 (161)
30 1i58_A Chemotaxis protein CHEA 99.8 1.8E-20 6.2E-25 195.4 15.8 145 931-1086 2-189 (189)
31 3ehg_A Sensor kinase (YOCF pro 99.8 1.2E-18 4E-23 169.8 14.0 126 934-1087 2-127 (128)
32 3zxo_A Redox sensor histidine 99.7 4.2E-17 1.4E-21 158.5 13.8 125 931-1086 2-128 (129)
33 3mr0_A Sensory box histidine k 99.7 3E-16 1E-20 154.7 15.5 138 611-753 2-141 (142)
34 3zxq_A Hypoxia sensor histidin 99.7 4.5E-16 1.5E-20 150.2 14.4 121 935-1086 2-123 (124)
35 4f3l_A Mclock, circadian locom 99.6 1.6E-15 5.4E-20 174.5 18.6 215 620-847 88-359 (361)
36 4f3l_B BMAL1B; BHLH, PAS, circ 99.6 3.1E-15 1.1E-19 173.5 16.7 212 621-846 89-386 (387)
37 3k3c_A Protein RV1364C/MT1410; 99.6 1.5E-14 5E-19 144.4 15.9 139 617-759 16-157 (158)
38 2pr5_A Blue-light photorecepto 99.6 1.3E-14 4.4E-19 140.7 14.7 127 621-754 2-131 (132)
39 2gj3_A Nitrogen fixation regul 99.6 1.7E-14 5.9E-19 137.3 14.4 117 617-738 4-120 (120)
40 1th8_A Anti-sigma F factor; SP 99.6 7.4E-15 2.5E-19 145.9 12.2 103 973-1090 35-143 (145)
41 3p7n_A Sensor histidine kinase 99.6 5.9E-15 2E-19 161.1 11.2 173 610-794 55-232 (258)
42 4hia_A LOV protein; PAS, HTH, 99.6 6.1E-15 2.1E-19 150.2 9.7 139 617-760 6-148 (176)
43 1mu5_A Type II DNA topoisomera 99.5 1.2E-14 4.1E-19 170.9 13.0 108 971-1088 26-150 (471)
44 3f1p_B ARYL hydrocarbon recept 99.5 2.6E-14 8.8E-19 136.0 11.8 115 620-739 4-120 (121)
45 2zbk_B Type 2 DNA topoisomeras 99.5 1.4E-14 4.8E-19 172.1 11.5 110 969-1088 22-149 (530)
46 3ue6_A Aureochrome1; PAS/LOV d 99.5 2.5E-14 8.6E-19 143.3 10.6 128 611-743 28-158 (166)
47 3kx0_X Uncharacterized protein 99.5 2.4E-14 8.1E-19 148.0 10.3 141 615-760 34-182 (185)
48 3nja_A Probable ggdef family p 99.5 7.2E-14 2.5E-18 131.8 12.5 122 613-739 2-125 (125)
49 3t50_A Blue-light-activated hi 99.5 1.1E-13 3.9E-18 132.0 11.7 123 623-750 2-127 (128)
50 3mxq_A Sensor protein; PSI2, M 99.5 1.1E-13 3.9E-18 138.5 11.7 129 611-741 15-151 (152)
51 1d06_A Nitrogen fixation regul 99.5 1.8E-13 6.3E-18 132.1 11.0 122 607-735 5-130 (130)
52 3f1p_A Endothelial PAS domain- 99.5 1.3E-13 4.6E-18 130.0 9.3 109 626-739 7-116 (117)
53 3p7n_A Sensor histidine kinase 99.4 4.3E-13 1.5E-17 146.2 13.7 170 716-888 24-238 (258)
54 2vv6_A FIXL, sensor protein FI 99.4 2.8E-13 9.5E-18 128.5 10.3 114 626-746 1-118 (119)
55 3sw1_A Sensory box protein; li 99.4 5.9E-13 2E-17 132.8 13.0 131 618-753 25-158 (162)
56 3h9w_A Diguanylate cyclase wit 99.4 5.4E-13 1.9E-17 125.5 10.9 112 627-742 2-114 (115)
57 3luq_A Sensor protein; PAS, hi 99.4 1.8E-12 6.2E-17 120.1 13.6 112 618-735 3-114 (114)
58 2v0u_A NPH1-1, LOV2; kinase, t 99.4 1.5E-12 5.1E-17 125.3 13.0 135 620-760 4-141 (146)
59 3lyx_A Sensory BOX/ggdef domai 99.4 2.2E-12 7.5E-17 120.1 13.0 119 616-739 5-123 (124)
60 3rty_A Period circadian protei 99.4 4.7E-12 1.6E-16 143.2 17.6 201 631-844 6-264 (339)
61 2q2e_B Type 2 DNA topoisomeras 99.4 2.8E-13 9.7E-18 162.9 7.7 109 971-1089 31-155 (621)
62 4eet_B Phototropin-2; LOV, blu 99.4 2.9E-12 1E-16 118.7 13.1 111 623-738 2-115 (115)
63 2z6d_A Phototropin-2; PAS-fold 99.4 3.6E-12 1.2E-16 119.4 13.8 123 616-743 4-129 (130)
64 3mqq_A Transcriptional regulat 99.4 9.4E-13 3.2E-17 124.9 9.7 115 619-740 4-119 (120)
65 2r78_A Sensor protein; sensory 99.4 4.5E-12 1.5E-16 120.2 13.6 113 612-735 5-117 (117)
66 3icy_A Sensor protein; sensory 99.4 2.9E-12 9.9E-17 119.9 11.2 115 616-735 2-118 (118)
67 3mr0_A Sensory box histidine k 99.3 3.2E-12 1.1E-16 125.6 11.1 113 742-857 2-138 (142)
68 3eeh_A Putative light and redo 99.3 3.4E-12 1.2E-16 119.4 10.4 120 610-735 3-125 (125)
69 1n9l_A PHOT-LOV1, putative blu 99.3 7.2E-12 2.5E-16 117.3 12.6 105 627-736 2-109 (109)
70 1v9y_A Heme PAS sensor protein 99.3 4E-12 1.4E-16 126.6 11.1 136 608-746 30-165 (167)
71 2gj3_A Nitrogen fixation regul 99.3 9.3E-12 3.2E-16 118.2 11.9 95 748-845 4-120 (120)
72 3bwl_A Sensor protein; structu 99.3 2.4E-11 8E-16 115.8 14.5 120 606-735 5-126 (126)
73 3bwl_A Sensor protein; structu 99.3 2.7E-11 9.4E-16 115.3 13.5 105 733-842 1-126 (126)
74 3mjq_A Uncharacterized protein 99.3 6.7E-12 2.3E-16 118.7 9.0 120 621-748 2-121 (126)
75 2wkq_A NPH1-1, RAS-related C3 99.3 2.3E-11 7.9E-16 137.7 14.3 121 621-746 14-137 (332)
76 2kdk_A ARYL hydrocarbon recept 99.3 3.1E-11 1E-15 114.1 12.5 112 622-738 7-120 (121)
77 3p01_A Two-component response 99.2 1.8E-10 6E-15 118.8 17.2 153 211-398 27-179 (184)
78 4dj3_A Period circadian protei 99.2 1E-10 3.5E-15 130.9 16.4 204 623-842 31-280 (317)
79 4hia_A LOV protein; PAS, HTH, 99.2 4.7E-11 1.6E-15 121.2 12.4 100 748-850 6-130 (176)
80 3ue6_A Aureochrome1; PAS/LOV d 99.2 1.3E-11 4.3E-16 123.4 7.6 113 735-850 21-158 (166)
81 1d06_A Nitrogen fixation regul 99.2 5.9E-11 2E-15 114.3 11.8 103 735-842 2-130 (130)
82 3vol_A Aerotaxis transducer AE 99.2 9E-11 3.1E-15 126.3 13.8 149 617-794 21-182 (233)
83 2pr5_A Blue-light photorecepto 99.2 4.5E-11 1.5E-15 115.5 10.3 101 753-858 3-128 (132)
84 3olo_A Two-component sensor hi 99.2 9.3E-11 3.2E-15 109.4 12.0 111 613-735 8-118 (118)
85 3nja_A Probable ggdef family p 99.2 6.9E-11 2.4E-15 111.1 10.7 100 744-846 2-125 (125)
86 3f1p_B ARYL hydrocarbon recept 99.2 4.6E-11 1.6E-15 113.3 9.0 93 751-846 4-120 (121)
87 3fc7_A HTR-like protein, senso 99.2 2.2E-11 7.5E-16 115.2 6.0 108 616-735 17-125 (125)
88 4dj2_A Period circadian protei 99.2 2.2E-10 7.7E-15 128.3 15.1 204 623-843 31-282 (320)
89 2qkp_A Uncharacterized protein 99.2 1.5E-10 5.2E-15 115.7 12.3 123 618-748 19-144 (151)
90 3gdi_A Period circadian protei 99.1 9.1E-10 3.1E-14 122.8 17.8 205 623-843 20-271 (309)
91 2zmf_A CAMP and CAMP-inhibited 99.1 1.7E-09 5.7E-14 110.8 17.4 155 214-398 13-176 (189)
92 3ewk_A Sensor protein; PAS dom 99.1 5.3E-10 1.8E-14 119.2 13.7 111 618-733 111-227 (227)
93 2l0w_A Potassium voltage-gated 99.1 8.2E-10 2.8E-14 104.9 13.3 114 620-737 21-138 (138)
94 2r78_A Sensor protein; sensory 99.1 4.2E-10 1.4E-14 106.4 11.0 93 742-842 4-117 (117)
95 4hi4_A Aerotaxis transducer AE 99.1 1.3E-09 4.6E-14 103.7 13.3 105 618-737 5-121 (121)
96 3f1p_A Endothelial PAS domain- 99.0 3.7E-10 1.3E-14 106.1 8.9 84 764-847 11-117 (117)
97 3mfx_A Sensory BOX/ggdef famil 99.0 5.4E-10 1.9E-14 108.5 9.9 115 618-736 7-124 (129)
98 3t50_A Blue-light-activated hi 99.0 2.9E-10 1E-14 108.0 7.7 93 756-851 4-121 (128)
99 3fg8_A Uncharacterized protein 99.0 7.4E-11 2.5E-15 111.9 3.3 114 611-737 5-118 (118)
100 3sw1_A Sensory box protein; li 99.0 4.4E-10 1.5E-14 111.7 9.0 108 748-858 24-156 (162)
101 1byw_A Protein (human ERG pota 99.0 2.2E-09 7.7E-14 97.0 12.9 105 629-737 2-110 (110)
102 3lyx_A Sensory BOX/ggdef domai 99.0 8.8E-10 3E-14 102.1 10.2 98 746-846 4-123 (124)
103 3eeh_A Putative light and redo 99.0 5.5E-10 1.9E-14 104.1 8.5 101 739-842 1-125 (125)
104 3h9w_A Diguanylate cyclase wit 99.0 1E-09 3.5E-14 102.8 10.3 86 764-849 5-114 (115)
105 3luq_A Sensor protein; PAS, hi 99.0 1.5E-09 5.1E-14 100.1 10.8 92 748-842 2-114 (114)
106 2z6d_A Phototropin-2; PAS-fold 99.0 1.7E-09 5.8E-14 100.9 11.2 102 746-850 3-129 (130)
107 1n9l_A PHOT-LOV1, putative blu 99.0 1.1E-09 3.6E-14 102.3 9.7 81 763-843 4-109 (109)
108 2v0u_A NPH1-1, LOV2; kinase, t 99.0 2E-09 6.8E-14 103.1 11.7 94 751-847 4-122 (146)
109 3k3c_A Protein RV1364C/MT1410; 99.0 1.1E-09 3.7E-14 108.7 10.0 104 745-853 13-144 (158)
110 1ykd_A Adenylate cyclase; GAF 99.0 4.6E-08 1.6E-12 113.5 25.1 318 215-588 10-377 (398)
111 3mqq_A Transcriptional regulat 99.0 4.4E-10 1.5E-14 106.2 6.5 93 750-847 4-119 (120)
112 3k2n_A Sigma-54-dependent tran 99.0 2.4E-08 8.3E-13 101.2 19.9 159 213-398 5-166 (177)
113 4eet_B Phototropin-2; LOV, blu 99.0 2.2E-09 7.4E-14 99.0 11.0 88 755-845 3-115 (115)
114 3icy_A Sensor protein; sensory 99.0 1.4E-09 4.7E-14 101.4 9.4 93 747-842 2-118 (118)
115 2vv6_A FIXL, sensor protein FI 99.0 2.3E-09 7.8E-14 101.2 10.8 88 763-852 4-117 (119)
116 3oov_A Methyl-accepting chemot 99.0 1.2E-08 4.2E-13 102.2 16.5 155 219-398 7-162 (169)
117 1v9y_A Heme PAS sensor protein 99.0 1.3E-09 4.6E-14 108.1 9.2 121 728-853 19-165 (167)
118 4f3l_A Mclock, circadian locom 98.9 1.3E-09 4.4E-14 125.2 9.9 109 628-741 251-360 (361)
119 3b33_A Sensor protein; structu 98.9 3.2E-09 1.1E-13 99.1 10.8 105 621-735 10-115 (115)
120 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 1.7E-09 5.9E-14 125.2 10.7 108 627-739 277-386 (387)
121 2vlg_A Sporulation kinase A; h 98.9 2.6E-09 9E-14 100.7 10.0 94 622-723 3-96 (111)
122 3trc_A Phosphoenolpyruvate-pro 98.9 2.1E-08 7.2E-13 100.7 17.2 158 210-398 4-161 (171)
123 3ci6_A Phosphoenolpyruvate-pro 98.9 5.4E-08 1.9E-12 97.0 19.5 155 213-398 9-163 (171)
124 3mxq_A Sensor protein; PSI2, M 98.9 4.8E-09 1.6E-13 104.8 11.1 102 743-847 16-150 (152)
125 3d72_A Vivid PAS protein VVD; 98.9 3.5E-09 1.2E-13 103.7 10.0 105 623-733 31-149 (149)
126 3olo_A Two-component sensor hi 98.9 4.7E-09 1.6E-13 97.7 9.7 95 743-842 7-118 (118)
127 2e4s_A CAMP and CAMP-inhibited 98.9 2.4E-08 8.2E-13 102.3 16.0 156 212-398 11-176 (189)
128 2qyb_A Membrane protein, putat 98.9 1.8E-08 6.1E-13 102.8 14.8 143 228-399 15-159 (181)
129 3e0y_A Conserved domain protei 98.9 3.4E-08 1.2E-12 100.1 16.9 149 217-398 18-166 (181)
130 3vol_A Aerotaxis transducer AE 98.9 6E-09 2.1E-13 111.9 11.4 119 749-875 22-167 (233)
131 2wkq_A NPH1-1, RAS-related C3 98.9 7E-09 2.4E-13 117.1 12.5 95 754-851 16-135 (332)
132 3cax_A Uncharacterized protein 98.8 1.6E-08 5.3E-13 116.4 13.8 115 618-743 239-353 (369)
133 1mc0_A 3',5'-cyclic nucleotide 98.8 3.5E-08 1.2E-12 113.1 16.0 203 214-451 14-222 (368)
134 3ibj_A CGMP-dependent 3',5'-cy 98.8 3.1E-07 1E-11 114.6 25.3 203 212-451 13-222 (691)
135 3kx0_X Uncharacterized protein 98.8 6.4E-09 2.2E-13 106.9 8.0 101 745-850 33-161 (185)
136 2w0n_A Sensor protein DCUS; si 98.8 1.7E-09 5.7E-14 100.6 2.7 109 610-735 7-118 (118)
137 3hcy_A Putative two-component 98.8 3.3E-08 1.1E-12 97.7 12.0 138 228-398 1-139 (151)
138 4eho_A Bacteriophytochrome, PA 98.8 1.3E-09 4.3E-14 134.3 1.9 97 749-848 518-635 (635)
139 1ll8_A PAS kinase; PAS domain, 98.8 3E-09 1E-13 99.5 4.0 103 626-735 6-113 (114)
140 2kdk_A ARYL hydrocarbon recept 98.7 2.6E-08 8.9E-13 93.6 9.1 82 764-845 15-120 (121)
141 3mjq_A Uncharacterized protein 98.7 1.8E-08 6E-13 94.8 7.3 95 752-852 2-118 (126)
142 3o5y_A Sensor protein; GAF dom 98.7 2.8E-07 9.5E-12 93.3 16.1 139 228-398 3-143 (165)
143 2ykf_A Pdtas, probable sensor 98.1 3.6E-09 1.2E-13 118.2 0.0 148 710-871 111-305 (305)
144 1mc0_A 3',5'-cyclic nucleotide 98.6 6E-07 2E-11 102.7 18.1 148 218-398 185-337 (368)
145 2jhe_A Transcription regulator 98.6 2.6E-08 9E-13 102.6 5.8 109 615-738 77-189 (190)
146 4hi4_A Aerotaxis transducer AE 98.6 1.7E-07 5.8E-12 88.9 10.1 90 749-844 5-121 (121)
147 3a0s_A Sensor protein; PAS-fol 98.6 2.6E-07 8.8E-12 81.1 10.6 95 627-733 1-96 (96)
148 2l0w_A Potassium voltage-gated 98.6 3.5E-07 1.2E-11 86.3 12.2 88 754-844 24-138 (138)
149 4dj3_A Period circadian protei 98.6 2E-07 6.9E-12 104.2 11.9 122 629-755 175-313 (317)
150 1byw_A Protein (human ERG pota 98.5 3.4E-07 1.2E-11 82.3 10.2 81 764-844 3-110 (110)
151 3ke6_A Protein RV1364C/MT1410; 98.5 1.8E-07 6E-12 108.7 9.5 92 974-1088 294-388 (399)
152 1nwz_A PYP, photoactive yellow 98.5 2.9E-07 1E-11 87.6 9.1 103 621-729 20-122 (125)
153 3mfx_A Sensory BOX/ggdef famil 98.5 4.4E-07 1.5E-11 87.8 10.5 88 749-842 7-123 (129)
154 1mzu_A PPR; photoactive yellow 98.5 2.3E-07 7.9E-12 88.5 8.2 102 622-729 26-127 (129)
155 2w3g_A DOSS, two component sen 98.5 5E-07 1.7E-11 88.5 10.4 140 228-398 4-145 (153)
156 3rty_A Period circadian protei 98.4 7.3E-07 2.5E-11 100.7 12.5 105 628-737 154-264 (339)
157 3b33_A Sensor protein; structu 98.4 8.9E-07 3E-11 82.2 10.3 85 752-842 10-115 (115)
158 2qkp_A Uncharacterized protein 98.4 6.7E-07 2.3E-11 89.1 9.1 97 749-850 19-139 (151)
159 1ixm_A SPO0B, protein (sporula 98.4 4.1E-06 1.4E-10 86.4 14.9 143 864-1044 23-170 (192)
160 1ykd_A Adenylate cyclase; GAF 98.4 5.9E-06 2E-10 95.6 18.0 141 228-398 212-376 (398)
161 2vjw_A GAF-B, GAF family prote 98.4 6.8E-06 2.3E-10 81.5 15.8 128 230-397 1-133 (149)
162 2vlg_A Sporulation kinase A; h 98.3 7E-07 2.4E-11 83.9 7.5 76 753-831 3-97 (111)
163 3fc7_A HTR-like protein, senso 98.3 1.9E-07 6.3E-12 87.8 3.1 92 747-842 17-125 (125)
164 2ykf_A Pdtas, probable sensor 97.6 8.6E-08 2.9E-12 107.1 0.0 119 622-752 174-301 (305)
165 3d72_A Vivid PAS protein VVD; 98.3 2.3E-06 7.7E-11 83.4 9.7 78 763-840 36-149 (149)
166 3ibj_A CGMP-dependent 3',5'-cy 98.2 7.1E-06 2.4E-10 102.3 15.7 140 229-399 195-338 (691)
167 3dba_A CONE CGMP-specific 3',5 98.2 1.3E-05 4.6E-10 81.9 14.2 155 213-397 6-172 (180)
168 4dj2_A Period circadian protei 98.2 5.4E-06 1.8E-10 92.7 11.5 104 628-736 176-282 (320)
169 3na3_A DNA mismatch repair pro 98.2 5E-06 1.7E-10 93.4 11.1 80 977-1074 28-120 (348)
170 1b63_A MUTL; DNA mismatch repa 98.2 4.4E-06 1.5E-10 94.2 10.1 71 977-1060 24-107 (333)
171 3gdi_A Period circadian protei 98.2 7.7E-06 2.6E-10 91.1 11.9 103 629-736 166-271 (309)
172 2w0n_A Sensor protein DCUS; si 98.1 7.8E-07 2.7E-11 82.2 3.2 95 741-842 7-118 (118)
173 1h7s_A PMS1 protein homolog 2; 98.1 3.7E-06 1.3E-10 95.7 9.3 71 977-1060 34-117 (365)
174 1ll8_A PAS kinase; PAS domain, 98.1 3.5E-06 1.2E-10 78.3 7.6 77 764-842 10-113 (114)
175 3fg8_A Uncharacterized protein 98.1 6.4E-07 2.2E-11 84.4 2.4 90 744-844 7-118 (118)
176 3mmh_A FRMSR, methionine-R-sul 98.1 0.00014 4.9E-09 73.3 19.8 146 213-397 15-161 (167)
177 3a0r_A Sensor protein; four he 98.1 6.9E-07 2.4E-11 101.2 2.4 102 744-848 3-120 (349)
178 3bjc_A CGMP-specific 3',5'-cyc 98.1 4E-07 1.4E-11 116.4 0.0 156 213-398 152-319 (878)
179 1kij_A DNA gyrase subunit B; t 98.1 2.5E-06 8.4E-11 98.0 6.2 78 972-1064 31-127 (390)
180 3h4l_A DNA mismatch repair pro 97.9 1.9E-05 6.3E-10 89.6 9.7 56 977-1045 25-80 (367)
181 2jhe_A Transcription regulator 97.9 5.8E-06 2E-10 84.8 4.8 91 747-845 78-189 (190)
182 3cax_A Uncharacterized protein 97.8 1.6E-05 5.4E-10 91.2 7.1 91 750-848 240-351 (369)
183 1vhm_A Protein YEBR; structura 97.8 0.00076 2.6E-08 69.7 18.4 142 215-397 30-172 (195)
184 3a0s_A Sensor protein; PAS-fol 97.8 2.3E-05 8E-10 68.2 5.9 78 763-840 3-96 (96)
185 3ksh_A Putative uncharacterize 97.7 0.0018 6.3E-08 64.4 18.2 130 228-396 29-159 (160)
186 1mzu_A PPR; photoactive yellow 97.6 0.00012 4.2E-09 69.7 7.5 76 754-835 27-126 (129)
187 1nwz_A PYP, photoactive yellow 97.6 0.00016 5.5E-09 68.7 8.2 79 752-835 20-121 (125)
188 1f5m_A GAF; CGMP binding, sign 97.5 0.0015 5E-08 66.8 15.7 138 221-396 34-177 (180)
189 3rfb_A Putative uncharacterize 97.5 0.003 1E-07 63.6 16.9 144 212-396 15-160 (171)
190 2wer_A ATP-dependent molecular 97.2 0.00012 4E-09 77.5 2.6 72 980-1060 29-130 (220)
191 1s16_A Topoisomerase IV subuni 97.1 0.0012 4.1E-08 75.5 9.4 71 979-1061 33-123 (390)
192 1ei1_A DNA gyrase B, GYRB; ATP 96.8 0.0028 9.7E-08 72.4 9.5 74 977-1062 34-127 (391)
193 3cit_A Sensor histidine kinase 96.7 0.014 4.8E-07 57.5 12.3 134 211-398 12-147 (160)
194 1qy5_A Endoplasmin; GRP94, NEC 96.7 0.00023 8E-09 77.0 -0.3 54 980-1042 31-97 (269)
195 3bjc_A CGMP-specific 3',5'-cyc 96.7 0.00028 9.7E-09 90.1 0.0 141 229-398 348-508 (878)
196 1yc1_A HSP 86, heat shock prot 96.7 0.00068 2.3E-08 73.2 3.0 73 980-1061 71-173 (264)
197 3zcc_A HAMP, osmolarity sensor 96.6 0.0042 1.4E-07 57.1 7.8 58 857-919 55-113 (114)
198 3fv5_A DNA topoisomerase 4 sub 96.6 0.0047 1.6E-07 64.0 8.4 71 979-1061 19-109 (201)
199 2ior_A Chaperone protein HTPG; 96.5 0.0032 1.1E-07 67.0 6.5 70 980-1060 50-153 (235)
200 1oj5_A Steroid receptor coacti 96.0 0.0062 2.1E-07 57.7 4.9 87 628-720 7-97 (132)
201 4duh_A DNA gyrase subunit B; s 95.9 0.018 6.1E-07 60.4 8.6 74 976-1061 34-127 (220)
202 2gqp_A Endoplasmin; GRP94, HSP 95.6 0.0033 1.1E-07 66.9 1.5 53 980-1043 35-102 (236)
203 1zxm_A TOPO IIA ATPase, DNA to 95.5 0.031 1E-06 63.9 9.3 73 976-1060 51-145 (400)
204 4emv_A DNA topoisomerase IV, B 95.5 0.022 7.4E-07 59.9 7.3 75 974-1060 37-130 (226)
205 3cwv_A DNA gyrase, B subunit, 95.3 0.028 9.7E-07 63.6 7.9 49 974-1034 27-76 (369)
206 1pvg_A DNA topoisomerase II; G 94.9 0.055 1.9E-06 62.2 9.0 72 977-1060 64-157 (418)
207 3zrx_A AF1503 protein, osmolar 94.7 0.085 2.9E-06 48.0 8.2 56 860-920 58-114 (115)
208 1y4s_A Chaperone protein HTPG; 94.4 0.054 1.9E-06 64.4 7.5 71 980-1061 30-134 (559)
209 3ttz_A DNA gyrase subunit B; p 94.1 0.04 1.4E-06 56.7 4.8 50 974-1035 28-78 (198)
210 3peh_A Endoplasmin homolog; st 93.8 0.031 1E-06 60.3 3.6 72 980-1060 49-151 (281)
211 3t0h_A Heat shock protein HSP 93.6 0.036 1.2E-06 58.3 3.6 72 980-1060 35-136 (228)
212 3lnu_A Topoisomerase IV subuni 92.9 0.13 4.3E-06 58.8 6.8 70 979-1060 52-141 (408)
213 3o0i_A HSP90AA1 protein; HSP90 92.6 0.037 1.3E-06 59.0 1.7 73 980-1061 63-165 (256)
214 2cg9_A ATP-dependent molecular 91.3 0.19 6.5E-06 60.8 6.2 52 980-1042 29-95 (677)
215 3nmq_A Heat shock protein HSP 90.9 0.11 3.7E-06 54.8 3.0 73 980-1061 42-144 (239)
216 3eea_A GAF domain/HD domain pr 90.3 6.2 0.00021 37.2 13.7 138 230-398 13-156 (162)
217 2ioq_A Chaperone protein HTPG; 90.0 0.25 8.6E-06 59.5 5.5 71 980-1061 30-134 (624)
218 2o1u_A Endoplasmin; GRP94, HSP 89.5 0.32 1.1E-05 58.8 5.9 58 971-1042 42-114 (666)
219 4dah_A Sporulation kinase D; a 84.1 13 0.00043 37.8 14.0 125 615-781 55-181 (217)
220 3ied_A Heat shock protein; HSP 83.5 0.35 1.2E-05 51.2 1.5 40 1021-1060 131-188 (272)
221 1oj5_A Steroid receptor coacti 83.5 2.1 7.1E-05 40.5 6.6 78 765-843 10-114 (132)
222 3szt_A QCSR, quorum-sensing co 82.3 8.6 0.0003 40.3 11.9 146 219-394 8-154 (237)
223 4gfh_A DNA topoisomerase 2; to 80.5 1.7 6E-05 56.1 6.6 73 977-1060 59-152 (1177)
224 2w1r_A Spovt, stage V sporulat 78.9 4.3 0.00015 38.0 7.2 119 235-397 4-122 (123)
225 3lif_A Putative diguanylate cy 76.4 39 0.0013 35.0 14.9 58 708-779 125-183 (254)
226 2ool_A Sensor protein; bacteri 72.6 3 0.0001 46.4 4.8 51 628-679 41-93 (337)
227 3e4o_A C4-dicarboxylate transp 71.4 27 0.00094 38.0 12.4 119 618-779 102-221 (305)
228 1p0z_A Sensor kinase CITA; tra 68.2 11 0.00039 35.2 7.3 77 629-736 51-127 (131)
229 3e98_A GAF domain of unknown f 53.0 70 0.0024 33.7 10.8 132 217-397 106-242 (252)
230 3qp6_A CVIR transcriptional re 52.5 2.3E+02 0.0078 29.8 15.1 132 213-371 21-158 (265)
231 3nhq_A Bacteriophytochrome; ph 48.0 7.6 0.00026 45.5 2.5 39 217-257 323-361 (505)
232 3by8_A Sensor protein DCUS; hi 42.7 24 0.00082 33.5 4.8 78 629-738 57-134 (142)
233 4e04_A Bacteriophytochrome (li 41.0 14 0.00046 40.8 3.0 47 631-678 32-78 (327)
234 1p0z_A Sensor kinase CITA; tra 36.9 1.3E+02 0.0045 27.6 9.0 87 747-843 37-127 (131)
235 3lmm_A Uncharacterized protein 36.6 77 0.0026 37.8 8.9 94 980-1087 299-409 (583)
236 3qp1_A CVIR transcriptional re 35.5 3.2E+02 0.011 26.6 16.6 147 215-390 18-171 (182)
237 2q0o_A Probable transcriptiona 35.0 3.8E+02 0.013 27.2 13.9 119 221-372 11-135 (236)
238 4dah_A Sporulation kinase D; a 34.9 46 0.0016 33.5 5.8 89 749-843 58-151 (217)
239 4ew7_A Conjugative transfer: r 31.1 2.8E+02 0.0097 24.6 11.2 37 620-656 22-58 (127)
240 4eu0_A PELD; C-DI-GMP, signali 30.0 4.5E+02 0.015 28.2 12.8 124 231-397 24-151 (298)
241 1l3l_A Transcriptional activat 29.7 3.3E+02 0.011 27.6 11.6 117 221-370 9-131 (234)
242 3s7o_A Bacteriophytochrome; bi 28.8 25 0.00084 38.9 2.5 46 631-678 55-101 (343)
243 4ew7_A Conjugative transfer: r 28.0 3.2E+02 0.011 24.3 8.9 35 752-789 23-57 (127)
244 3lid_A Putative sensory BOX/gg 26.7 2.2E+02 0.0077 30.2 9.9 136 611-776 60-202 (295)
245 2hl0_A Threonyl-tRNA synthetas 26.2 63 0.0021 30.8 4.4 29 230-258 52-83 (143)
246 3by8_A Sensor protein DCUS; hi 22.8 1.8E+02 0.0061 27.2 7.2 72 764-843 58-132 (142)
247 3pxp_A Helix-turn-helix domain 20.5 1.3E+02 0.0043 32.5 6.1 39 614-652 95-133 (292)
No 1
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=100.00 E-value=5.2e-118 Score=1100.09 Aligned_cols=611 Identities=28% Similarity=0.431 Sum_probs=539.6
Q ss_pred hHHHH-HhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccccccCCchHHHHHHHHhc
Q 001353 79 QITAY-LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157 (1093)
Q Consensus 79 ~~~~~-~~~i~~~g~iQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 157 (1093)
++|.| .||||+||+|||||||||+|+++++|+++|+|+.++||.+ .++|+++.++|++.....+....
T Consensus 16 dl~~C~~EpIh~pg~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~---------~~lg~~l~~~~~~~~~~~~~~~~-- 84 (635)
T 4eho_A 16 DLSNCEREEIHLAGSIQPHGALLVVSEPDHRIIQASANAAEFLNLG---------SVLGVPLAEIDGDLLIKILPHLD-- 84 (635)
T ss_dssp CTTTTTSCBCSSCSEECTTEEEEEECTTTCBEEEEETTHHHHHTCS---------CCSSCBSSSSSSSHHHHHGGGCC--
T ss_pred cCcccccccccCcCcccCCeEEEEEECCCCeEEEEeCcHHhhhCcH---------hhhCCCHHHHcchHHHHHHhhhh--
Confidence 57899 9999999999999999999999999999999999999974 38999999999987665554321
Q ss_pred ccccccCceeecccCCCCCccEEEEEeee-CCEEEEEeccCCCCCccchhhhhhHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 001353 158 REISLLNPILVHSNSRSIEKPFYAILHRI-DVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236 (1093)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~f~~~~hr~-~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1093)
......|+.+++.....++.|++++||. ++.+||||||..+.. ... +++.++++||++ ++|+++||+
T Consensus 85 -~~~~~~~~~~~~~~~~~~~~~~~~~hr~~~~~li~elE~~~~~~---~~~------~~~~~~~~~i~~--s~~l~~i~~ 152 (635)
T 4eho_A 85 -PTAEGMPVAVRCRIGNPSTEYDGLMHRPPEGGLIIELERAGPPI---DLS------GTLAPALERIRT--AGSLRALCD 152 (635)
T ss_dssp -SSSCCCSCEEEEEETTTTEEEEEECCCCSSSSEEEEEECCCSCC---CCC------TTSSSHHHHHHH--CCSHHHHHH
T ss_pred -hhccCCceeEEEEecCCCceEEEEEEEcCCCEEEEEEEECCCch---hHH------HHHHHHHHHHHh--hCCHHHHHH
Confidence 1233457777765556788999999995 678999999986532 122 234578999999 889999999
Q ss_pred HHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCeEEEecCCCCCccccc--
Q 001353 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ-- 314 (1093)
Q Consensus 237 ~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~~~l~~-- 314 (1093)
++|+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++|++|++|+|+|++++|++|.|
T Consensus 153 ~~v~evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~r~i~d~~~~~v~~~~~~ 232 (635)
T 4eho_A 153 DTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYERQRVRVLVDVSYQPVPLEPRL 232 (635)
T ss_dssp HHHHHHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHHHSCEEEESCSSCCCEEEESSB
T ss_pred HHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHHcCCeEEEecccCCccccccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCCCCCchHHHHHHHHHHHHHH
Q 001353 315 SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394 (1093)
Q Consensus 315 ~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~~~~~~~r~~~~~l~~~~~~ 394 (1093)
++.+++|||||+|+||++||||++||+||||+|||+|||++++ +|||||+||||+||+|++++|.+|+++++++|+
T Consensus 233 ~~~~~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vpi~~~~----~LWGLl~~h~~~pr~~~~~~~~~~~~l~~~~~~ 308 (635)
T 4eho_A 233 SPLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVSLVVGG----KLWGLVACHHYLPRFIHFELRAICELLAEAIAT 308 (635)
T ss_dssp CTTTSSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEEEEETT----EEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHH
T ss_pred CcccCCccccccceecCCCHHHHHHHHhhCcceEEEEEEEEcc----eeeeeeeeecCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CcccccCCcchhhhccCCEEEEEECCeEEEecCCCCHHHHHHHHHH
Q 001353 395 QLYMELQVAMQLAEKNILRTQVLLCDMLLRDA--PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWW 472 (1093)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~a~g~al~~~~~~~~~G~~p~~~~~~~l~~~ 472 (1093)
+|++....+++..++++.++++.+++++.+.. +.++..+.++++++++|||++|+++++++++|.+|+..++.+|+.|
T Consensus 309 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~l~~adg~al~~~~~~~~~G~~P~~~~i~~l~~w 388 (635)
T 4eho_A 309 RITALESFAQSQSELFVQRLEQRMIEAITREGDWRAAIFDTSQSILQPLHADGCALVYEDQIRTIGDVPSTQDVREIAGW 388 (635)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCSHHHHSCTTSCSSGGGTCSEEEEEETTEEEEEESCCCHHHHHHHHHH
T ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHhcChHHHhhhcCCeEEEEECCEEEEEeCCCCHHHHHHHHHH
Confidence 99988777777778888888888888887644 4678899999999999999999999999999999999999999999
Q ss_pred HHhccCCCceeeeccccccCCCCccccccccccEEEEeeCC--CcEEEEeecCcCcEEEecCCCCCCccCC-CCCccccC
Q 001353 473 LLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITS--KDFLFWFRSHTAKEVKWGGAKHHPEHKD-NGGKMHPR 549 (1093)
Q Consensus 473 l~~~~~~~~~~~t~~l~~~~~p~~~~~~~~~~G~l~~~~~~--~~~l~wfR~e~~~~v~W~G~p~~~~~~~-~~~~l~Pr 549 (1093)
+...+. ..+|+|++|.. .||++..+++.+|||++++|+. ++|++|||+|+.++++|+|+|+++...+ ++.+|+||
T Consensus 389 l~~~~~-~~~~~t~~l~~-~~p~~~~~~~~~~G~l~~~i~~~~~~~l~~fR~e~~~~v~WaG~p~~~~~~~~~~~~l~PR 466 (635)
T 4eho_A 389 LDRQPR-AAVTSTASLGL-DVPELAHLTRMASGVVAAPISDHRGEFLMWFRPERVHTVTWGGDPKKPFTMGDTPADLSPR 466 (635)
T ss_dssp HTTSCC-CSSEEESCHHH-HCGGGGGGHHHHSEEEEEECSSSSSCEEEEEECCTTTTTCSSSCCSCCCCSCCSGGGCSHH
T ss_pred HHhcCC-CcEEEeccccc-cCcchhhhhhhcccEEEEEecCCCCcEEEEeccceeEEEEeccCCCCccccCCCcceecce
Confidence 987755 47899999985 6999999999999999999986 5899999999999999999999997644 46799999
Q ss_pred chhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHhhhhccchhhhccccccchhhhHHHHHHHHHHHHHHHHhcCc
Q 001353 550 SSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLIETATA 629 (1093)
Q Consensus 550 ~SF~~w~e~v~g~s~pW~~~El~aa~sL~liL~~sl~~l~~~~~~~~~~~~~L~~~l~q~~~eL~~~~~~l~~lie~~~~ 629 (1093)
+||++|.|+|++++.||+..|++++..++..+......... +...++++..+++.++++++++
T Consensus 467 ~SF~~w~e~v~~~s~pW~~~e~~aa~~l~~~l~~~il~~r~-----------------~~~~~a~e~~~~~~~lle~a~~ 529 (635)
T 4eho_A 467 RSFAKWHQVVEGTSDPWTAADLAAAGTIGQTVADIVLQFRA-----------------VRTLIAREQVPQASSQVHASMQ 529 (635)
T ss_dssp HHHHHHHHTTTTCCSCCCTTHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHTSSSHHHHHHHCSS
T ss_pred eeeecccceeeecccccchhhhHHHHhhhhhHHHHHHHHhH-----------------HHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999997666544433221 0112233334567888999999
Q ss_pred cEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccCCcEEE
Q 001353 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVY 709 (1093)
Q Consensus 630 ~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG~~~~ 709 (1093)
+|+++|.+|+|++||+++++++||+.++++|++.. ..+++++.+.+...++.+..++.. ..|+.+ .++||+.+|
T Consensus 530 ~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l-~~~~~~~~~~~~~i~~~l~~g~~~-~~E~~~----~~~dG~~~~ 603 (635)
T 4eho_A 530 PVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDL-AGFFVESNDFLRNVAELIDHGRGW-RGEVLL----RGAGNRPLP 603 (635)
T ss_dssp CCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGG-TTSSSSCTHHHHHHHHHHHHCCCB-CCCCEE----CCSSSSCEE
T ss_pred cEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchh-hccCCCCHHHHHHHHHHHHcCCcE-EEEEEE----EccCCcEEE
Confidence 99999999999999999999999999999999988 888899999888888777776543 334443 478999999
Q ss_pred EEEEEEEeecCCCCEEEEEEEEEecchhHHHH
Q 001353 710 ILVNACTSRDYKNNVKGVCFVGQDITHEKVLM 741 (1093)
Q Consensus 710 v~v~~~pi~d~~g~v~gv~~v~~DITerK~aE 741 (1093)
+.++.+|++|.+|+++|++++++|||+||++|
T Consensus 604 ~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 604 LAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp CCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred EEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 99999999999999999999999999999875
No 2
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=100.00 E-value=1.5e-114 Score=1019.19 Aligned_cols=496 Identities=31% Similarity=0.566 Sum_probs=447.9
Q ss_pred CCChhhHHHH-HhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccccccCCchHHHHH
Q 001353 74 GVPEEQITAY-LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLFTPPSGASLA 152 (1093)
Q Consensus 74 ~~~~~~~~~~-~~~i~~~g~iQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 152 (1093)
..++-.++.| .||||+||+|||||||||+|+++++|+|+|+|+.++||+++ ..++|+++.++|+++.+++++
T Consensus 6 ~~~~~dl~~CdrEPIh~pG~IQphG~LLal~~~~~~I~~~S~N~~~~lg~~~-------~~llG~~l~~ll~~~~~~~l~ 78 (520)
T 3zq5_A 6 QLSDQSLRQLETLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSP-------EDLLGRTLGEVFDSFQIDPIQ 78 (520)
T ss_dssp CCCHHHHHHHHTCCGGGCCEECTTSEEEEEETTTTEEEEEETTHHHHHSCCH-------HHHTTSBHHHHCEESSCCCCS
T ss_pred CCCCCCccccccccccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcCh-------HHHcCCCHHHHcCHHHHHHHH
Confidence 4567789999 99999999999999999999999999999999999999987 579999999999998888887
Q ss_pred HHHhcccccccCceeecccCCCCCc-cEEEEEeee-CCEEEEEeccCCCCCccchhhhhhHHHHHHHHHHHHhhcCCCCC
Q 001353 153 KAAASREISLLNPILVHSNSRSIEK-PFYAILHRI-DVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGD 230 (1093)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~-~f~~~~hr~-~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (1093)
+++...+....+|+.++++...+++ .|++++||+ ++.+||||||..+.+.. +..+.++++.+++.+|++ +++
T Consensus 79 ~~l~~~~~~~~~p~~~~~~~~~~~~~~f~~~~Hr~~~~~lilElEp~~~~~~~----~~~~~~~ll~~i~~~Ir~--sl~ 152 (520)
T 3zq5_A 79 SRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSDNL----PFLGFYHMANAALNRLRQ--QAN 152 (520)
T ss_dssp SCCCHHHHHHTSSEEEEEEETTTEEEEEEEEEEECTTSCEEEEEEECCTTCSC----CCTTHHHHHHHHHHHHHH--SCC
T ss_pred HHhcccccccCCcEEEEEeccCCCceeEEEEEEEEcCCEEEEEEEECCCcccc----chHHHHHHHHHHHHHHHh--cCC
Confidence 7665555556789988763333556 899999999 99999999999654432 234578999999999999 789
Q ss_pred HHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCeEEEecCCCCCc
Q 001353 231 IGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPV 310 (1093)
Q Consensus 231 ~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~~ 310 (1093)
++++|+++|+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++|.+|++|+|+|++++|+
T Consensus 153 l~~il~~~v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~ly~~~~vr~I~Di~~~pv 232 (520)
T 3zq5_A 153 LRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAV 232 (520)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHHHHHHCCEEEESCTTCCCE
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHHHHHcCCEEEEcCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc--ccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCCCCCchHHHHHHHH
Q 001353 311 MVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFL 388 (1093)
Q Consensus 311 ~l~~--~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~~~~~~~r~~~~~l 388 (1093)
+|+| ++.++.|+|||+|+||++||||++||+||||+|||+|||+++| +|||||+||||+||+|++++|.+|+++
T Consensus 233 ~l~~~~~~~~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvpI~~~~----~LWGLl~~Hh~~pR~w~~~er~~~e~l 308 (520)
T 3zq5_A 233 PLTPAVNPSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLIKDG----HLWGLIACHHQTPKVIPFELRKACEFF 308 (520)
T ss_dssp EEESSSCTTTSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEEEEETT----EEEEEEEEEESSCCCCCHHHHHHHHHH
T ss_pred eeecccccccCCcccccccccccCCHHHHHHHHhcCCcEEEEEeEEECC----EEEEEEEEecCCCcCCCHHHHHHHHHH
Confidence 9998 5778999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCC-CcccccCCcchhhhccCCEEEEEECCeEEEecCCCCHHHH
Q 001353 389 VQAFSLQLYMELQVAMQLAEKNILRTQV-LLCDMLLRDA-PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQL 466 (1093)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~l~~a~g~al~~~~~~~~~G~~p~~~~~ 466 (1093)
++++|++|++....+....++++.+++. +++.|...++ +.++..+.+++|+|++|||+||+++|+++++|.||+.+++
T Consensus 309 a~~lsiai~q~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~~~~~~G~~P~~~~i 388 (520)
T 3zq5_A 309 GRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDEKAV 388 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETTEEEEEESCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEECCEEEEcCCCCCHHHH
Confidence 9999999988766666666666665544 4566666555 5788899999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCceeeeccccccCCCCccccccccccEEEEeeCCCcEEEEeecCcCcEEEecCCCCCCcc--CCCCC
Q 001353 467 KDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEH--KDNGG 544 (1093)
Q Consensus 467 ~~l~~~l~~~~~~~~~~~t~~l~~~~~p~~~~~~~~~~G~l~~~~~~~~~l~wfR~e~~~~v~W~G~p~~~~~--~~~~~ 544 (1093)
++|++||..++.+ ++|+||+|.. .||++..+++.+||||+++|+.++||+|||+|+.++|+|||+|+|++. .++|.
T Consensus 389 ~~l~~wl~~~~~~-~v~~Td~L~~-~~p~a~~~~~~a~G~lai~ls~~~~l~wFR~e~~~~v~WaG~P~k~~~~~~~~g~ 466 (520)
T 3zq5_A 389 QYLLQWLENREVQ-DVFFTSSLSQ-IYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGK 466 (520)
T ss_dssp HHHHHHHHHSCCC-SCEEESCGGG-TSGGGGGGHHHHSEEEEEEETTTEEEEEEECCCCEEEEESSCGGGCSEEEEETTE
T ss_pred HHHHHHHHhcCCC-CeeEecchhh-hCcchhhcccccceEEEEEeCCCCEEEEECCCcceEEEeCCCCCCcCCcCCCCCC
Confidence 9999999998776 6999999998 699999999999999999999999999999999999999999999876 33565
Q ss_pred -ccccCchhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHh
Q 001353 545 -KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEM 588 (1093)
Q Consensus 545 -~l~Pr~SF~~w~e~v~g~s~pW~~~El~aa~sL~liL~~sl~~l 588 (1093)
+++||+||++|+|+|+|+|.||++.|++++.+|+..+.+.+.+.
T Consensus 467 ~~l~PR~SF~~W~E~v~g~s~pW~~~e~~~A~~Lr~~l~~vvl~~ 511 (520)
T 3zq5_A 467 IELHPRQSFDLWKEIVRLQSLPWQSVEIQSALALKKAIVNLILRQ 511 (520)
T ss_dssp EEEECCCCCCCEEEEECSCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhheeeecCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999977666554433
No 3
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=100.00 E-value=2.3e-111 Score=990.68 Aligned_cols=474 Identities=28% Similarity=0.453 Sum_probs=428.4
Q ss_pred hhhHHHH-HhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCcccc-ccCCchHHHHHHH
Q 001353 77 EEQITAY-LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDART-LFTPPSGASLAKA 154 (1093)
Q Consensus 77 ~~~~~~~-~~~i~~~g~iQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~ 154 (1093)
+-.++.| .||||+||+|||||||||+|+ +++|+++|+|+.++||.++ ++|+++.+ +|+++.+++++++
T Consensus 6 ~~dl~~C~~EPIh~pG~IQphG~Ll~l~~-~~~I~~~S~N~~~~lg~~~---------~lG~~l~~~ll~~~~~~~l~~~ 75 (505)
T 3nhq_A 6 PVTLANCEDEPIHVPGAIQPHGALVTLRA-DGMVLAASENIQALLGFVA---------SPGSYLTQEQVGPEVLRMLEEG 75 (505)
T ss_dssp CCCTTTGGGCCTTSCSEECTTEEEEEECT-TSBEEEEETTHHHHHSSCC---------CTTCBCCHHHHHHHHHHHHHHH
T ss_pred cCCccccccccccCCCccCCCeEEEEEcC-CCeEEEEcccHHHHhCccc---------ccCCchhhhhCCHHHHHHHHHH
Confidence 3456788 999999999999999999999 8999999999999999854 89999999 9999999999998
Q ss_pred HhcccccccCceeecccCCCCCccEEEEEeeeCCEEEEEeccCCCCCccchhhhhhHHHHHHHHHHHHhhcCCCCCHHHH
Q 001353 155 AASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLL 234 (1093)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~hr~~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1093)
+..... ..+|+.++ .+++.|++++||+++.+|+||||..+.+. ...+.++++.+++.+|++ +++++++
T Consensus 76 l~~~~~-~~~p~~~~----~~~~~f~~~~Hr~~~~lilElEp~~~~~~-----~~~~~~~ll~~i~~~Ir~--sl~l~~i 143 (505)
T 3nhq_A 76 LTGNGP-WSNSVETR----IGEHLFDVIGHSYKEVFYLEFEIRTADTL-----SITSFTLNAQRIIAQVQL--HNDTASL 143 (505)
T ss_dssp HSCSSC-CCCEEEEC----SSSSCEEEEEEEETTEEEEEEEECCSCCC-----CSHHHHHHHHHHHHHHHH--CCCHHHH
T ss_pred hhcccc-cCCcEEEe----cCCceEEEEEEEECCEEEEEEEEcCCccc-----chHHHHHHHHHHHHHHHh--cCCHHHH
Confidence 876544 67888875 36789999999999999999999865432 124678999999999999 7899999
Q ss_pred HHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCeEEEecCCCCCccccc
Q 001353 235 CDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314 (1093)
Q Consensus 235 ~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~~~l~~ 314 (1093)
|+++|+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++|.+|++|+|+|+++.|+|++|
T Consensus 144 l~~~v~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ly~~~~vr~I~Dv~~~~~~l~~ 223 (505)
T 3nhq_A 144 LSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFP 223 (505)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHHCSEEEESCTTCCCEEEES
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHHHHHcCCEEEEcCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --ccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCCCCCchHHHHHHHHHHHH
Q 001353 315 --SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAF 392 (1093)
Q Consensus 315 --~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~~~~~~~r~~~~~l~~~~ 392 (1093)
++.++.|+|||+|+|||+||||++||+||||+|||+|||+++| +|||||+||||+||+|++++|.+|+++++++
T Consensus 224 ~~~~~~~~pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvpI~~~~----~LWGLl~~Hh~~pR~w~~~er~~~e~la~~l 299 (505)
T 3nhq_A 224 ALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGG----KLWGLFSCHHMSPKLIPYPVRMSFQIFSQVC 299 (505)
T ss_dssp SEETTTTEECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEECSS----SEEEEEEEEESSCCCCCHHHHHHHHHHHHHH
T ss_pred ccccccCCcccccccccccCCHHHHHHHHhcCCceEEEEEEEECC----EEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CcccccCCcchhhhccCCEEEEEECCeEEEecCCCCHHHHHHHH
Q 001353 393 SLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDA--PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIA 470 (1093)
Q Consensus 393 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~a~g~al~~~~~~~~~G~~p~~~~~~~l~ 470 (1093)
|++|++....+.+..++++.++++.++.++.++. +.++.++.+++++|++|||+|||++|+++++|.||+.+++.+|+
T Consensus 300 s~al~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~~~~~~G~~P~~~~i~~l~ 379 (505)
T 3nhq_A 300 SAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQ 379 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETTEEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECCeEEecCCCCCHHHHHHHH
Confidence 9999988777777777788888888888776543 46788889999999999999999999999999999999999999
Q ss_pred HHHHhccCCCceeeeccccccCCCCccc---cccccccEEEEeeCC--CcEEEEeecCcCcEEEecCCCCCCcc-CCCCC
Q 001353 471 WWLLNNHGDCTGLSTDSLAEAGYPGAAL---LGQAVCGMATARITS--KDFLFWFRSHTAKEVKWGGAKHHPEH-KDNGG 544 (1093)
Q Consensus 471 ~~l~~~~~~~~~~~t~~l~~~~~p~~~~---~~~~~~G~l~~~~~~--~~~l~wfR~e~~~~v~W~G~p~~~~~-~~~~~ 544 (1093)
+||..++.+ +|+|| .||++.. +.+.+||||+++|+. ++||+|||+|+.++|+|||+|+|++. .++|.
T Consensus 380 ~wl~~~~~~--v~~Td-----~~p~a~~~~~~~~~~~G~lai~ls~~~~~~l~wFR~e~~~~v~WaG~P~k~~~~~~~~~ 452 (505)
T 3nhq_A 380 RLQRDPERD--IYHTD-----NWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGP 452 (505)
T ss_dssp HHHTCTTCS--EEEES-----CC-----------CCCEEEEEEEETTTTEEEEEEECSCCCSEEEEESCCCCCCCCTTCG
T ss_pred HHHHhcCCC--eEEeC-----CCcchhhccccccccceEEEEEecCCCCcEEEEEcCCcceEEEeCCCCCCcCCCCCCCC
Confidence 999988765 99999 5999988 899999999999986 79999999999999999999999976 45678
Q ss_pred ccccCchhHHHHHHhhccccccchhhhhhhhHHHHHHHH
Q 001353 545 KMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRD 583 (1093)
Q Consensus 545 ~l~Pr~SF~~w~e~v~g~s~pW~~~El~aa~sL~liL~~ 583 (1093)
+++||+||++|+|+|+|+|.||++.|++++.+|+..+.+
T Consensus 453 ~l~PR~SF~~W~E~v~g~s~pW~~~e~~~A~~Lr~~l~~ 491 (505)
T 3nhq_A 453 RLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLME 491 (505)
T ss_dssp GGSHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCchhhhhhheeeecCccCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999665544
No 4
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=100.00 E-value=4.5e-82 Score=699.12 Aligned_cols=303 Identities=34% Similarity=0.555 Sum_probs=279.4
Q ss_pred hhHHHH-HhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccccccCCchHHHHHHHHh
Q 001353 78 EQITAY-LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLFTPPSGASLAKAAA 156 (1093)
Q Consensus 78 ~~~~~~-~~~i~~~g~iQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 156 (1093)
-.++.| .||||+||+|||||||||+| ++++|+|+|+|+.++||+++ +.++|+++.++|+++.++++++++.
T Consensus 10 ~~l~~C~rEpIh~~G~IQphG~Ll~~~-~~~~I~~~S~N~~~~lg~~~-------~~~lG~~l~~ll~~~~~~~l~~~l~ 81 (327)
T 4e04_A 10 PDLSTCDDEPIHIPGAIQPHGLLLALA-ADMTIVAGSDNLPELTGLAI-------GALIGRSAADVFDSETHNRLTIALA 81 (327)
T ss_dssp ---CCGGGCCTTCCSEECTTSEEEEEC-TTCBEEEEETTHHHHHSCCH-------HHHTTCBHHHHBCHHHHHHHHHHHH
T ss_pred CCccccccccccCCCccCCCeEEEEEc-CCCeEEEEcccHHHHhCCCh-------HhhcCCCHHHHcCHHHHHHHHHHhh
Confidence 357889 99999999999999999999 89999999999999999987 5799999999999999999999888
Q ss_pred cccccccCceeecccCCCCCccEEEEEeeeCCEEEEEeccCCCCCccchhhhhhHHHHHHHHHHHHhhcCCCCCHHHHHH
Q 001353 157 SREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCD 236 (1093)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~f~~~~hr~~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1093)
.......+|+.++++...+++.|++++||+++.+|+||||..... .. ....++++.+++.||++ +.|+++||+
T Consensus 82 ~~~~~~~~p~~~~~~~~~~~~~f~~~~Hr~~~~lilElEp~~~~~--~~---~~~~~~ll~~i~~rIr~--sldl~~il~ 154 (327)
T 4e04_A 82 EPGAAVGAPIAVGFTMPDGERAFNGSWHRHDQLVFLELEPPQRDV--RY---PQAFFRSVRSAIRRLQA--AETLESACA 154 (327)
T ss_dssp SCSCCSEEEEEEEBCCTTCCCEEEEEEEEETTEEEEEEECCCCCS--SC---CCCHHHHHHHHHHHHHH--CCSHHHHHH
T ss_pred ccccccCCcEEEEeeccCCCceEEEEEEEECCEEEEEEEECCCcc--cc---hHHHHHHHHHHHHHHHh--cCCHHHHHH
Confidence 766667889998754445778999999999999999999984322 11 22468899999999999 779999999
Q ss_pred HHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCeEEEecCCCCCccccc--
Q 001353 237 TVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ-- 314 (1093)
Q Consensus 237 ~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~~~l~~-- 314 (1093)
++|+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++|.+|++|+|+|++++|+||+|
T Consensus 155 ~av~evr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~ly~~~~vr~I~Di~~~~v~l~~~~ 234 (327)
T 4e04_A 155 AAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRLYTINPVRIIPDINYRPVPVTPDL 234 (327)
T ss_dssp HHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEEESCC
T ss_pred HHHHHHHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHHHHHcCCEEEEeCCCCCcccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCCCCCchHHHHHHHHHHHHHH
Q 001353 315 SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394 (1093)
Q Consensus 315 ~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~~~~~~~r~~~~~l~~~~~~ 394 (1093)
++.+++|+||++|+||++||||++||+||||+|||+|||+++| +|||||+||||+||+|++++|.+|+++|+++|+
T Consensus 235 ~~~~~~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvpI~~~~----~LWGLl~~Hh~~pR~w~~~er~~~e~la~~lsi 310 (327)
T 4e04_A 235 NPRTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILRGE----RLWGLIACHHRKPNYVDLEVRQACELVAQVLAW 310 (327)
T ss_dssp CTTTSSCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEEEEETT----EEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccCCcccccccccccCCHHHHHHHHHhCCcEEEEEEEEECC----EEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHH
Q 001353 395 QLYME 399 (1093)
Q Consensus 395 ~l~~~ 399 (1093)
+|++.
T Consensus 311 aI~~~ 315 (327)
T 4e04_A 311 QIGVM 315 (327)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99764
No 5
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=100.00 E-value=1.1e-81 Score=696.49 Aligned_cols=298 Identities=29% Similarity=0.465 Sum_probs=277.0
Q ss_pred hhHHHH-HhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccccccCCchHHHHHHHHh
Q 001353 78 EQITAY-LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLFTPPSGASLAKAAA 156 (1093)
Q Consensus 78 ~~~~~~-~~~i~~~g~iQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~ 156 (1093)
-.++.| .||||+||+|||||||||+|+++++|+++|+|+.++||+++ +.++|+++.++|++ .++++++++.
T Consensus 33 ~dl~~Cd~EPIh~pG~IQphG~LL~l~~~~~~I~~~S~N~~~~lg~~~-------~~llG~~l~~ll~~-~~~~l~~~l~ 104 (343)
T 3s7o_A 33 ITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEP-------TVLRGQTLAALLPE-QWPALQAALP 104 (343)
T ss_dssp CCTTTGGGCCTTCCSEECTTSEEEEEETTTCBEEEEETTHHHHHSSCH-------HHHTTCBHHHHSTT-THHHHHHHSC
T ss_pred cCccccccccccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcCh-------HHHcCCCHHHHHhH-HHHHHHHHhc
Confidence 367889 99999999999999999999999999999999999999987 57999999999999 9999998877
Q ss_pred cccccccC---ceeecccCCCCCccEEEEEeeeCCEEEEEeccCCCCCccchhhhhhHHHHHHHHHHHHhhcCCCCCHHH
Q 001353 157 SREISLLN---PILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGL 233 (1093)
Q Consensus 157 ~~~~~~~~---~~~~~~~~~~~~~~f~~~~hr~~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (1093)
..+....+ |+.+. +++.|++++||+++.+||||||..+.+ .+.++++.+++.||++ ++|+++
T Consensus 105 ~~~~~~~~~~~p~~~~-----~~~~f~~~~Hr~~~~lilElEp~~~~~--------~~~~~ll~~i~~rIr~--sldl~~ 169 (343)
T 3s7o_A 105 PGCPDALQYRATLDWP-----AAGHLSLTVHRVGELLILEFEPTEAWD--------STGPHALRNAMFALES--APNLRA 169 (343)
T ss_dssp TTCCTTCCEEEEECCS-----SSSEEEEEEEEETTEEEEEEEEEC------------CHHHHHHHHHHHHHH--CCSHHH
T ss_pred cccccccccCCcEEEc-----CCCEEEEEEEEECCEEEEEEEECCCCh--------HHHHHHHHHHHHHHHh--cCCHHH
Confidence 65555666 87764 467899999999999999999986532 1568999999999999 789999
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCeEEEecCCCCCcccc
Q 001353 234 LCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVI 313 (1093)
Q Consensus 234 ~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~~~l~ 313 (1093)
||+++|+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++|.+|++|+|+|++++|++|+
T Consensus 170 ilq~tV~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~ly~~~~vr~I~Di~~~pv~l~ 249 (343)
T 3s7o_A 170 LAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARALYTRHLLRLTADTRAAAVPLD 249 (343)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHHHHHcCCEEEEeccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c--ccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCCCCCchHHHHHHHHHHH
Q 001353 314 Q--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQA 391 (1093)
Q Consensus 314 ~--~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~~~~~~~r~~~~~l~~~ 391 (1093)
| ++.+++||||++|+||++||||++||+||||+|||+|||+++| +|||||+|||++||+|++++|.+|++||++
T Consensus 250 ~~~~~~~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvpI~~~~----~LWGLL~~Hh~~pR~w~~~er~~~e~la~~ 325 (343)
T 3s7o_A 250 PVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGG----QLWGLIACHHQTPYVLPPDLRTTLESLGRL 325 (343)
T ss_dssp SSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEETT----EEEEEEEEEESSCCCCCHHHHHHHHHHHHH
T ss_pred cccccccCCcccccccccccCCHHHHHHHHHcCCcEEEEEEEEECC----EEEEEEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 8 4678999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 001353 392 FSLQLYMELQV 402 (1093)
Q Consensus 392 ~~~~l~~~~~~ 402 (1093)
+|++|+++.++
T Consensus 326 lsiaI~~~~~~ 336 (343)
T 3s7o_A 326 LSLQVQVKEAL 336 (343)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999876554
No 6
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=100.00 E-value=1.7e-78 Score=679.61 Aligned_cols=303 Identities=32% Similarity=0.552 Sum_probs=278.9
Q ss_pred hHHHH-HhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccccccCCchHHHHHHHHhc
Q 001353 79 QITAY-LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157 (1093)
Q Consensus 79 ~~~~~-~~~i~~~g~iQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 157 (1093)
.++.| .||||+||+|||||||||+|+++++|+++|+|+.++||.++ +.++|+++.++|+++..+++++++..
T Consensus 24 ~l~~C~~EpIh~~g~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~-------~~llG~~l~~ll~~~~~~~l~~~l~~ 96 (337)
T 2ool_A 24 DLTECDREPIHIPGAIQPHGYLFVVSETDLRIASVSANVEDLLRQPP-------ASLLNVPIAHYLTAASAARLTHALHG 96 (337)
T ss_dssp --CCGGGSCTTCCSEECTTSEEEEECTTTCBEEEEETTHHHHHSSCG-------GGGTTCBGGGGBCHHHHHHHHHHHCC
T ss_pred ChhhhccCcCcCCCccCCCEEEEEEECCCCEEEEEehhHHHHHCcCH-------HHHcCCCHHHHcCHHHHHHHHHHHhc
Confidence 57788 99999999999999999999989999999999999999988 57999999999999999999998877
Q ss_pred ccccccCceeecccCCCCCccEEEEEeeeCCEEEEEeccCCCCCccchhhhhhHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 001353 158 REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDT 237 (1093)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~f~~~~hr~~~~~~ie~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1093)
......+|+.+++.....++.|++++||+++.+|+||||..+... ..+.++++.+++.+|++ ++++++||++
T Consensus 97 ~~~~~~~p~~~~~~~~~~~~~f~~~~Hr~~~~li~ElE~~~~~~~------~~~~~~ll~~i~~~Ir~--sl~l~~il~~ 168 (337)
T 2ool_A 97 GDPAAINPIRLDVVTPDGERAFNGILHRHDSIVILELEPRDESRY------TNEFFRSVRVAIRRLQT--AADLPTACWI 168 (337)
T ss_dssp ----CCCSEEEEEEETTEEEEEEEEEEEETTEEEEEEECCCCCSC------HHHHHHHHHHHHHHHHT--CCSHHHHHHH
T ss_pred CCccccCcEEEEEeccCCCeEEEEEEEEcCCeEEEEEEecccchh------hHHHHHHHHHHHHHHHh--cCCHHHHHHH
Confidence 766778999887733224678999999999999999999965432 34678999999999999 8899999999
Q ss_pred HHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCeEEEecCCCCCccccc--c
Q 001353 238 VVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ--S 315 (1093)
Q Consensus 238 ~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~~~l~~--~ 315 (1093)
+|+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|++|.+|++|+|+|+++.|+||+| +
T Consensus 169 tv~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar~ly~~~~vr~I~Di~~~~v~~~~~~~ 248 (337)
T 2ool_A 169 AASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRALYTINPVRIIPDIGYRPSPLVPDIN 248 (337)
T ss_dssp HHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEEESCCC
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHHHHHHhCCEEEEEccCCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred cccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCCCCCchHHHHHHHHHHHHHHH
Q 001353 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQ 395 (1093)
Q Consensus 316 ~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~~~~~~~r~~~~~l~~~~~~~ 395 (1093)
+.+++|||||+|+||++||||++||+||||+|||+|||+++| +|||||+||||+||+|++++|.+|++||+++|++
T Consensus 249 ~~~~~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvpI~~~~----~LWGLl~~Hh~~pR~w~~~e~~~~e~la~~l~ia 324 (337)
T 2ool_A 249 PRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIVRDN----RLWGMISCHNLTPRFVSYEVRQACELIAQVLTWQ 324 (337)
T ss_dssp TTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEEETT----EEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcccccccccCCCHHHHHHHHHcCccccEEEEEEECC----eeEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHH
Q 001353 396 LYMEL 400 (1093)
Q Consensus 396 l~~~~ 400 (1093)
|++..
T Consensus 325 i~q~e 329 (337)
T 2ool_A 325 IGVLE 329 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97643
No 7
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-42 Score=395.14 Aligned_cols=340 Identities=18% Similarity=0.262 Sum_probs=271.5
Q ss_pred HHHHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEE
Q 001353 614 SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVE 693 (1093)
Q Consensus 614 ~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e 693 (1093)
+.+++.++.++++++++|+++|.+|+|++||++++++|||+.++++|+++. ++.+++. ....+...+..+.+...
T Consensus 4 ~~~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~- 78 (349)
T 3a0r_A 4 EHLRNFSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLK-DLPDFEE---IGSVAESVFENKEPVFL- 78 (349)
T ss_dssp -----CCCSSGGGSSSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBST-TSTTTTH---HHHHHHHHHHHCCCCEE-
T ss_pred HHHHHHHHHHHhhhcCeEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHH-HCcChhH---HHHHHHHHHhcCCceee-
Confidence 344566788999999999999999999999999999999999999999988 6643332 23334444443333111
Q ss_pred EEEEEeeeccCCcEEEEEEEEEEeecCCCCE-EEEEEEEEecchhHHHHHHHHHHHHHHHHHHHhcCCCCCceEEecCCC
Q 001353 694 LKLRKFELQKQHSVVYILVNACTSRDYKNNV-KGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENA 772 (1093)
Q Consensus 694 ~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v-~gv~~v~~DITerK~aEe~L~~se~~lr~i~~~~~~li~~I~~~D~~g 772 (1093)
. ...++.+|+.++..|+++.+|.. .|++++++|||++|++++++++.
T Consensus 79 -~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~~~------------------------- 126 (349)
T 3a0r_A 79 -N------FYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKRR------------------------- 126 (349)
T ss_dssp -E------CCCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTHH-------------------------
T ss_pred -c------ccccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHHHH-------------------------
Confidence 1 11234568888889998877765 58888889999888776553211
Q ss_pred cEeechhhhHHHhCCCcchhccccCCCccceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHHHHHH
Q 001353 773 CCSEWNAAMEKVTGWMRHEVIGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQ 852 (1093)
Q Consensus 773 ~i~~~N~a~~~l~G~~~eEliG~~~~~~~~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~elq 852 (1093)
T Consensus 127 -------------------------------------------------------------------------------- 126 (349)
T 3a0r_A 127 -------------------------------------------------------------------------------- 126 (349)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHhc-ccccccccCccccc
Q 001353 853 GLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSS-ISENQRQYLETSDACERQIMTIIDG-MDLRCIEEGNMELK 930 (1093)
Q Consensus 853 ~~~e~~~~~k~~~la~isHELrnPLt~I~g~~~LL~~~~-l~~~~~~~l~~i~~~~~rl~~lI~d-Ldlsrie~g~~~l~ 930 (1093)
+....+.+|++.++|||||||++|.++++++.... .++...++++.+....+++.+++++ +++++. ...+.
T Consensus 127 ----~~~~~~~~~~~~i~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~ 199 (349)
T 3a0r_A 127 ----ERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLE 199 (349)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEE
T ss_pred ----HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccC
Confidence 11224568899999999999999999999998753 3344578899999999999999999 688874 23456
Q ss_pred eeeeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCcc
Q 001353 931 SEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKL 1010 (1093)
Q Consensus 931 ~~~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~ 1010 (1093)
..++++.+++++++..+...+..+++.+.++++++. ..+.+|+..|.|||.||+.||+||++. +|.|.|++...++
T Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~d~~~l~~vl~nLl~NA~k~~~~-~~~i~i~~~~~~~- 275 (349)
T 3a0r_A 200 FTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNED--LRVEADRTRIKQVLINLVQNAIEATGE-NGKIKITSEDMYT- 275 (349)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHTTTTCCCEEEESCSC--CEEEECHHHHHHHHHHHHTHHHHTTCT-TCCEEEEEEEETT-
T ss_pred CcccCHHHHHHHHHHHHHHHHHHcCcEEEEecCCCC--ceEEeCHHHHHHHHHHHHHHHHHhccC-CCEEEEEEEecCC-
Confidence 789999999999999999999889999998887653 368999999999999999999999976 7999999988877
Q ss_pred ccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-CCCCccchHHHHHHHHH-HcCCEEEEEeeCCeeEEEEEEeecCC
Q 001353 1011 IKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-WTTPEGLGLKLSRKLLI-MMNGRVRYVRENSKCYFVIDLELKTR 1088 (1093)
Q Consensus 1011 ~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~~~GtGLGL~ivr~ive-~hgG~I~v~S~~ggt~F~v~LPlp~~ 1088 (1093)
.+.|+|.|||+|||++.+++||+|||+ +..|+||||++||++++ .|||+++++|.++||+|+|+||+...
T Consensus 276 --------~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~~g~GlGL~i~~~~v~~~~gg~i~~~~~~~Gt~f~i~lP~~~~ 347 (349)
T 3a0r_A 276 --------KVRVSVWNSGPPIPEELKEKIFSPFFTTKTQGTGLGLSICRKIIEDEHGGKIWTENRENGVVFIFEIPKTPE 347 (349)
T ss_dssp --------EEEEEEEEESCCCCGGGGTTTSSSCCCC------CCCTHHHHHHHHTTCSBCCEEECSSEEEEEEEEESCTT
T ss_pred --------EEEEEEEECCCCCChHHHhhcCCCCccCCCCCccchHHHHHHHHHHhCCCEEEEEeCCCcEEEEEEecCCCC
Confidence 899999999999999999999999998 67899999999999999 79999999999889999999998754
Q ss_pred c
Q 001353 1089 G 1089 (1093)
Q Consensus 1089 ~ 1089 (1093)
+
T Consensus 348 ~ 348 (349)
T 3a0r_A 348 K 348 (349)
T ss_dssp C
T ss_pred C
Confidence 3
No 8
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=100.00 E-value=1.4e-34 Score=297.56 Aligned_cols=151 Identities=24% Similarity=0.291 Sum_probs=140.7
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCe
Q 001353 220 ISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299 (1093)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~ 299 (1093)
.++|++ ++|++++++++|++||+++|+|||+||+|++||+|+|+||++.++++|++|.+||++|||.+++++|.++++
T Consensus 3 a~~Ir~--sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~ 80 (171)
T 4glq_A 3 AVQLSE--LRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRI 80 (171)
T ss_dssp -----C--TTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCC
T ss_pred HHHHhh--cCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCE
Confidence 467788 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCC-CCCCC
Q 001353 300 RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTS-PRYIP 378 (1093)
Q Consensus 300 r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~-p~~~~ 378 (1093)
++|+|+++.++ +|||.+||++|||+|+|+|||+++| +|||+|+||||+ ||.|+
T Consensus 81 ~~I~Dv~~~~~----------------------~~~~~~~l~~~~v~S~L~vPi~~~~----~l~GlL~~~~~~~~r~w~ 134 (171)
T 4glq_A 81 QATTDIFKAGL----------------------TECHLNQLRPLKVRANLVVPMVIDD----QLFGLLIAHQASEPRQWQ 134 (171)
T ss_dssp EEESCGGGTTC----------------------CHHHHHHHGGGTEEEEEEEEEEETT----EEEEEEEEEEESSCCCCC
T ss_pred EEEcCcCcCCC----------------------CHHHHHHHHhcCCcEEEEEEEEECC----EEEEEEEEEeCCCCCCCC
Confidence 99999987654 5999999999999999999999999 999999999984 99999
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 001353 379 FPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 379 ~~~r~~~~~l~~~~~~~l~~ 398 (1093)
..+..+++.+|.++++.|.+
T Consensus 135 ~~ei~ll~~lA~ql~iAi~q 154 (171)
T 4glq_A 135 EIEIDQFSELASTGSLVLER 154 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999964
No 9
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=2.1e-33 Score=308.63 Aligned_cols=224 Identities=18% Similarity=0.281 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHhc-ccccccccCccccce
Q 001353 856 DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESS---SISENQRQYLETSDACERQIMTIIDG-MDLRCIEEGNMELKS 931 (1093)
Q Consensus 856 e~~~~~k~~~la~isHELrnPLt~I~g~~~LL~~~---~l~~~~~~~l~~i~~~~~rl~~lI~d-Ldlsrie~g~~~l~~ 931 (1093)
++..+.+.+|++.++|||||||++|.++++++... ...++.+++++.+...+.+|..++++ +++++++.+...+..
T Consensus 14 ~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~~ 93 (258)
T 2c2a_A 14 KRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINR 93 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCcc
Confidence 34445677899999999999999999999998653 22345678999999999999999999 699999988888889
Q ss_pred eeeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCC--CCeEEEEEEeCCc
Q 001353 932 EEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSP--DGWVEIKVLPGLK 1009 (1093)
Q Consensus 932 ~~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~--~g~I~I~v~~~~~ 1009 (1093)
+++++.+++++++..+...+..+++.+.++.+...+ ..+.+|+..|.|||.||+.||+||++.. ++.|.|.+...++
T Consensus 94 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~ 172 (258)
T 2c2a_A 94 EKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCP-VEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDG 172 (258)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSC-CEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETT
T ss_pred ceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCC-ceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCC
Confidence 999999999999999999998999998887654333 4688999999999999999999998752 2568888877777
Q ss_pred cccCCCceeEEEEEEecCCCCCChhhHhhhccCCCCC-------CCCccchHHHHHHHHHHcCCEEEEEeeCC-eeEEEE
Q 001353 1010 LIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQW-------TTPEGLGLKLSRKLLIMMNGRVRYVRENS-KCYFVI 1081 (1093)
Q Consensus 1010 ~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~~-------~~GtGLGL~ivr~ive~hgG~I~v~S~~g-gt~F~v 1081 (1093)
.+.|+|.|||+|||++.+++||+|||+. ..|+||||+|||++++.|||+|+++|.+| ||+|+|
T Consensus 173 ---------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i 243 (258)
T 2c2a_A 173 ---------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFV 243 (258)
T ss_dssp ---------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEE
T ss_pred ---------eEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCCCcEEEE
Confidence 8999999999999999999999999972 24899999999999999999999999986 599999
Q ss_pred EEeecCCc
Q 001353 1082 DLELKTRG 1089 (1093)
Q Consensus 1082 ~LPlp~~~ 1089 (1093)
+||.....
T Consensus 244 ~lP~~~~~ 251 (258)
T 2c2a_A 244 WIPKDRAG 251 (258)
T ss_dssp EEECCC--
T ss_pred EeeCCCCC
Confidence 99986554
No 10
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.98 E-value=1.4e-31 Score=292.40 Aligned_cols=227 Identities=10% Similarity=0.053 Sum_probs=164.4
Q ss_pred CCcEEEEEEEEeecccCcHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 001353 828 EGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACE 907 (1093)
Q Consensus 828 ~G~v~g~i~~~~DITe~k~~e~elq~~~e~~~~~k~~~la~isHELrnPLt~I~g~~~LL~~~~l~~~~~~~l~~i~~~~ 907 (1093)
.|....+...++|+|.++..+.+++.....+ .+.+.|||||||||++|.+++++|++...++..+++++.|.+..
T Consensus 17 ~g~~~~~~~~~~e~~~~~~~e~~~~~~~laa-----llas~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~ 91 (247)
T 4fpp_A 17 RGSHNQMTETVTETTAPASPEADVQGPDFAA-----MLAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSA 91 (247)
T ss_dssp --------------------------CHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----HHHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4555667778889998877766544322111 26778999999999999999999998877788888999999999
Q ss_pred HHHHHHHhcccccccccCccccceeeeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHH
Q 001353 908 RQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLH 987 (1093)
Q Consensus 908 ~rl~~lI~dLdlsrie~g~~~l~~~~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~ 987 (1093)
+++..+++.+ ++..+ ......++++.++.. .+......+++++..++++.. .+..+.|++.||+.
T Consensus 92 ~~~~~ll~~~---r~~~~-~~~~~~~~~~~~l~~----~~~~~~~~~~i~l~~~~~~~~-------~~~~~~qvl~NLl~ 156 (247)
T 4fpp_A 92 RKLADLLQFT---RVAFG-ASASAENFDSRELEK----LAQGVFAHVRPTLDWQIEPQA-------MNKPSSRAVLNIAQ 156 (247)
T ss_dssp HHHHHHHHHH---HHHTT-CCSSCCCEEHHHHHH----HHHHHHTTSSSEEEECCCSCE-------ECHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHhhc-cccccccccHHHHHH----HHHHHHHhhhhhccccccchh-------hhHHHHHHHHHHHH
Confidence 9998888653 22222 123456778776543 344455677888888877642 24568899999999
Q ss_pred HHHHcCCCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCC--CChhhHhhhccCCCC-CCCCccchHHHHHHHHHHc
Q 001353 988 CVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEG--IPSHLIEDMYNGRNQ-WTTPEGLGLKLSRKLLIMM 1064 (1093)
Q Consensus 988 NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~G--Ip~e~~~~IFe~F~~-~~~GtGLGL~ivr~ive~h 1064 (1093)
||+||+|. +|.|+|++...++ .+.|+|.|+|+| ||++..+++|++|++ +..|+||||+|||+||+.|
T Consensus 157 NA~~a~~~-gg~I~v~~~~~~~---------~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~~G~GLGLai~~~iv~~h 226 (247)
T 4fpp_A 157 IAASALPA-GGVATVKGVAADG---------RFSIIADAKGPRARLRPEVLAGLKGEPLAEGLGGPWVQAAYLNALVRAA 226 (247)
T ss_dssp HHHTTCTT-CCEEEEEEEEETT---------EEEEEEEEESTTCCCCHHHHHHHTTCCCCSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-CCeEEEEEEEECC---------EEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCCCCccHHHHHHHHHHHHc
Confidence 99999998 8999999998888 899999999977 779999999999987 6679999999999999999
Q ss_pred CCEEEEEeeCCeeEEEEEEe
Q 001353 1065 NGRVRYVRENSKCYFVIDLE 1084 (1093)
Q Consensus 1065 gG~I~v~S~~ggt~F~v~LP 1084 (1093)
||+|+++|.+||++|+|+||
T Consensus 227 GG~i~v~s~~~G~~f~v~LP 246 (247)
T 4fpp_A 227 GGQIAVEIGEDRASIAAWVP 246 (247)
T ss_dssp TCEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEcCCEEEEEEEec
Confidence 99999999999999999999
No 11
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=99.97 E-value=2.3e-30 Score=285.66 Aligned_cols=223 Identities=23% Similarity=0.329 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHhc-ccccccccCcccccee
Q 001353 855 EDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESS-SISENQRQYLETSDACERQIMTIIDG-MDLRCIEEGNMELKSE 932 (1093)
Q Consensus 855 ~e~~~~~k~~~la~isHELrnPLt~I~g~~~LL~~~-~l~~~~~~~l~~i~~~~~rl~~lI~d-Ldlsrie~g~~~l~~~ 932 (1093)
.++..+.+.+|++.++|||||||++|.++++++... ..+++.+++++.+....+++..++++ +++++++.+...+...
T Consensus 33 l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~ 112 (268)
T 4ew8_A 33 LAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIE 112 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 334445567899999999999999999999999864 46778889999999999999999999 6999999888888999
Q ss_pred eeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCcccc
Q 001353 933 EFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIK 1012 (1093)
Q Consensus 933 ~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~ 1012 (1093)
++++.+++.+++..+......+++.+.++++++.+ .+.+|+..|.+||.||+.||++|++. ++.|.|.+...++
T Consensus 113 ~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~--~v~~d~~~l~~il~nLl~NA~~~~~~-~~~I~i~~~~~~~--- 186 (268)
T 4ew8_A 113 DIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG--LIRGDGKRLAQTLDHLVENALRQTPP-GGRVTLSARRALG--- 186 (268)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC--EEEECHHHHHHHHHHHHHHHHHHSCT-TCEEEEEEEECSS---
T ss_pred eccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc--eEecCHHHHHHHHHHHHHHHHHhCCC-CCEEEEEEEecCC---
Confidence 99999999999999999999999999999988754 58999999999999999999999987 7899999998888
Q ss_pred CCCceeEEEEEEecCCCCCChhhHhhhccCCCC-CCCCccchHHHHHHHHHHcCCEEEEEeeCC-eeEEEEEEeecCCc
Q 001353 1013 DADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-WTTPEGLGLKLSRKLLIMMNGRVRYVRENS-KCYFVIDLELKTRG 1089 (1093)
Q Consensus 1013 ~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~~~GtGLGL~ivr~ive~hgG~I~v~S~~g-gt~F~v~LPlp~~~ 1089 (1093)
.+.|+|.|||+|||++.++++|+||++ +.+|+||||++|+++++.|||+|++.|.+| ||+|+|.||+...+
T Consensus 187 ------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~lP~~~~~ 259 (268)
T 4ew8_A 187 ------EVRLDVSDTGRGVPFHVQAHIFDRFVGRDRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQQP 259 (268)
T ss_dssp ------EEEEEEEESSCCCCHHHHTTTTSTTCCCSSCCCTTHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEECCC--
T ss_pred ------EEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCEEEEEEecCCCCC
Confidence 999999999999999999999999987 778999999999999999999999999987 59999999986554
No 12
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.96 E-value=1.3e-30 Score=278.81 Aligned_cols=212 Identities=13% Similarity=0.225 Sum_probs=134.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHhc-ccccccccCccccceeeeeHHHH
Q 001353 862 KIKELAYIRQEVKNPLNGIRFVHKLLESSSIS-ENQRQYLETSDACERQIMTIIDG-MDLRCIEEGNMELKSEEFLLGNI 939 (1093)
Q Consensus 862 k~~~la~isHELrnPLt~I~g~~~LL~~~~l~-~~~~~~l~~i~~~~~rl~~lI~d-Ldlsrie~g~~~l~~~~v~L~~l 939 (1093)
+.+|++.++|||||||++|.++++++.....+ +..+++++.+....+++..++++ +++++++.+......+++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 45789999999999999999999998764433 34467778888889999999999 69999998888888999999999
Q ss_pred HHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCccccCCCceeE
Q 001353 940 LDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVH 1019 (1093)
Q Consensus 940 l~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~ 1019 (1093)
+++++..+...+..+++.+.++++++. ..+.+|+..|.+||.||+.||++|++. ++.|.|.+ ..+ .
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~d~~~l~~il~nLl~NAi~~~~~-~~~i~i~~--~~~---------~ 147 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHS--IKRTGQPLLLSLLVRNLLDNAVRYSPQ-GSVVDVTL--NAD---------N 147 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCS--CEEEECHHHHHHHHHHHHHHHHHTCCT-TCEEEEEE--CSS---------E
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcc--eEEecCHHHHHHHHHHHHHHHHHcCCC-CCeEEEEE--ccC---------e
Confidence 999999999999999999999988763 368899999999999999999999987 77777765 333 2
Q ss_pred EEEEEecCCCCCChhhHhhhccCCCC----CCCCccchHHHHHHHHHHcCCEEEEEeeCCe-eEEEEEEeecCCc
Q 001353 1020 VQFRLTHPGEGIPSHLIEDMYNGRNQ----WTTPEGLGLKLSRKLLIMMNGRVRYVRENSK-CYFVIDLELKTRG 1089 (1093)
Q Consensus 1020 v~l~V~DnG~GIp~e~~~~IFe~F~~----~~~GtGLGL~ivr~ive~hgG~I~v~S~~gg-t~F~v~LPlp~~~ 1089 (1093)
|.|.|||+|||++.++++|+|||+ +.+|+||||++||++++.|||+|+++|.+|+ |+|++.||.+.++
T Consensus 148 --i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~g~GlGL~i~~~i~~~~gG~i~i~s~~~~Gt~v~~~~P~~~~~ 220 (222)
T 3jz3_A 148 --FIVRDNGPGVTPEALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLEHHHH 220 (222)
T ss_dssp --EEEECSCC--------------------------CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCCC---
T ss_pred --EEEEECCCCCCHHHHHHHHhhhccCCCCCCCcccccHHHHHHHHHHcCCEEEEEcCCCCcEEEEEeecCCCCC
Confidence 889999999999999999999997 3459999999999999999999999999875 9999999987654
No 13
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.96 E-value=1.3e-28 Score=267.25 Aligned_cols=211 Identities=19% Similarity=0.270 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHhc-ccccccccCccccceeeeeHHH
Q 001353 861 AKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS-ENQRQYLETSDACERQIMTIIDG-MDLRCIEEGNMELKSEEFLLGN 938 (1093)
Q Consensus 861 ~k~~~la~isHELrnPLt~I~g~~~LL~~~~l~-~~~~~~l~~i~~~~~rl~~lI~d-Ldlsrie~g~~~l~~~~v~L~~ 938 (1093)
.+.+|++.++|||||||++|.++++++.+...+ ++.+++++.+....+++..++++ +++++.... ..+++++..
T Consensus 13 ~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l~~ 88 (244)
T 3d36_A 13 AVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNVKL 88 (244)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEHHH
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhHHH
Confidence 456889999999999999999999999876554 45678999999999999999999 588886543 468999999
Q ss_pred HHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCccccCCCcee
Q 001353 939 ILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFV 1018 (1093)
Q Consensus 939 ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~ 1018 (1093)
++++++..+......+++.+.++.++ ..+.+|+..|.+||.||+.||++|++. ++.|.|.+...++
T Consensus 89 ~l~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~d~~~l~~il~nLl~NA~~~~~~-~~~i~i~~~~~~~--------- 154 (244)
T 3d36_A 89 EIERVIDILRPLANMSCVDIQATLAP----FSVIGEREKFRQCLLNVMKNAIEAMPN-GGTLQVYVSIDNG--------- 154 (244)
T ss_dssp HHHHHHHHHHHHHTTTTEEEEEECCC----CEEEECHHHHHHHHHHHHHHHHHTCTT-CEEEEEEEEEETT---------
T ss_pred HHHHHHHHHHHHHHhcCeEEeccCCC----ceEEeCHHHHHHHHHHHHHHHHHhccC-CCeEEEEEEEeCC---------
Confidence 99999999999999999999888765 368899999999999999999999976 7899999988877
Q ss_pred EEEEEEecCCCCCChhhHhhhccCCCCC--CCCccchHHHHHHHHHHcCCEEEEEeeCC-eeEEEEEEeecCCc
Q 001353 1019 HVQFRLTHPGEGIPSHLIEDMYNGRNQW--TTPEGLGLKLSRKLLIMMNGRVRYVRENS-KCYFVIDLELKTRG 1089 (1093)
Q Consensus 1019 ~v~l~V~DnG~GIp~e~~~~IFe~F~~~--~~GtGLGL~ivr~ive~hgG~I~v~S~~g-gt~F~v~LPlp~~~ 1089 (1093)
.+.|+|.|+|+|||++.++++|+||++. ..|+|+||++|+++++.|||+|++++.++ |++|+|+||+...+
T Consensus 155 ~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~~g~GlGL~i~~~i~~~~gG~i~~~~~~~~G~~~~i~lP~~~~~ 228 (244)
T 3d36_A 155 RVLIRIADTGVGMTKEQLERLGEPYFTTKGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLASSP 228 (244)
T ss_dssp EEEEEEEECSSCCCHHHHHHTTSTTCCSSGGGCCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC--
T ss_pred EEEEEEEecCCCCCHHHHHHHhcccccCCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEecCCCCC
Confidence 8999999999999999999999999983 46999999999999999999999999876 59999999987654
No 14
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.96 E-value=1.2e-28 Score=287.45 Aligned_cols=216 Identities=12% Similarity=0.099 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc-ccccccccCccccceeeeeHH
Q 001353 860 YAKIKELAYIRQEVKNPLNGIR-FVHKLLESSSISENQRQYLETSDACERQIMTIIDG-MDLRCIEEGNMELKSEEFLLG 937 (1093)
Q Consensus 860 ~~k~~~la~isHELrnPLt~I~-g~~~LL~~~~l~~~~~~~l~~i~~~~~rl~~lI~d-Ldlsrie~g~~~l~~~~v~L~ 937 (1093)
....++++.++||+||||+.|. ++.+++.....+++.+++++.+..+..+|..++++ +++++++.+...+..+++++.
T Consensus 119 ~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~~l~ 198 (388)
T 1gkz_A 119 AQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPK 198 (388)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEECHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCCCHH
Confidence 3566899999999999999999 77777766555778899999999999999999999 799999999888999999999
Q ss_pred HHHHHHHHHHHHHhccC-----CeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCC--------eEEEEE
Q 001353 938 NILDAVVSQVMVLLRDK-----NLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDG--------WVEIKV 1004 (1093)
Q Consensus 938 ~ll~~v~~~~~~~~~~~-----~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g--------~I~I~v 1004 (1093)
+++++++..+...+..+ ++.+..+.+. .+.+|+..|.|||.|||.||+||++. ++ .|.|.+
T Consensus 199 ~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~~-----~~~~~~~~L~~il~NLl~NAik~~~~-~~~~~~~~~~~I~I~~ 272 (388)
T 1gkz_A 199 KIIEKWVDFARRLCEHKYGNAPRVRINGHVAA-----RFPFIPMPLDYILPELLKNAMRATME-SHLDTPYNVPDVVITI 272 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCEEEEESTTC-----CEEECCHHHHHHHHHHHHHHHHHHHH-TCTTCTTSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEccCCC-----ceeecHHHHHHHHHHHHHHHHHHhhc-cccCCCCCCCCEEEEE
Confidence 99999999999988877 5555554332 47789999999999999999999876 43 899999
Q ss_pred EeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-CC--------------------------CCccchHHHH
Q 001353 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-WT--------------------------TPEGLGLKLS 1057 (1093)
Q Consensus 1005 ~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~~--------------------------~GtGLGL~iv 1057 (1093)
...++ .+.|+|+|+|+|||++.+++||+|||+ +. .|+||||+||
T Consensus 273 ~~~~~---------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL~i~ 343 (388)
T 1gkz_A 273 ANNDV---------DLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTS 343 (388)
T ss_dssp EECSS---------EEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSCHHHHH
T ss_pred EeCCC---------EEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcCCccCCHHHH
Confidence 88887 999999999999999999999999998 22 5999999999
Q ss_pred HHHHHHcCCEEEEEeeCC-eeEEEEEEeecCCcc
Q 001353 1058 RKLLIMMNGRVRYVRENS-KCYFVIDLELKTRGR 1090 (1093)
Q Consensus 1058 r~ive~hgG~I~v~S~~g-gt~F~v~LPlp~~~~ 1090 (1093)
|.+++.|||+|++.|.+| ||+|+|+||......
T Consensus 344 r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~ 377 (388)
T 1gkz_A 344 RAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGRE 377 (388)
T ss_dssp HHHHHHTTCEEEEEEETTTEEEEEEEEECSSSCC
T ss_pred HHHHHHhCCEEEEEecCCCcEEEEEEecCCCCCC
Confidence 999999999999999987 599999999865443
No 15
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.96 E-value=1.6e-27 Score=278.48 Aligned_cols=210 Identities=12% Similarity=0.119 Sum_probs=172.4
Q ss_pred HHHHHHHHhhhh-----HHHHHHHHHHHHhcCCCCHH----HHHHHH--HHHHHHHHHHHHHhc-cccccccc-Cccccc
Q 001353 864 KELAYIRQEVKN-----PLNGIRFVHKLLESSSISEN----QRQYLE--TSDACERQIMTIIDG-MDLRCIEE-GNMELK 930 (1093)
Q Consensus 864 ~~la~isHELrn-----PLt~I~g~~~LL~~~~l~~~----~~~~l~--~i~~~~~rl~~lI~d-Ldlsrie~-g~~~l~ 930 (1093)
++++.++||||| ||+.|.++++++.....++. .+++++ .+.....+| +|++ |++++.+. +...+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 467788999999 99999999999887554433 344777 377778888 9999 69999877 566666
Q ss_pred e----eeeeHHHHHHHHHHHHHHHhcc-----CCeEEEeec---CCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCC
Q 001353 931 S----EEFLLGNILDAVVSQVMVLLRD-----KNLHLLHDI---PEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDG 998 (1093)
Q Consensus 931 ~----~~v~L~~ll~~v~~~~~~~~~~-----~~i~l~~~~---~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g 998 (1093)
. +++++.+++++++..+...+.. +++.+.+.. ++. ...+.+|+..|.|||.|||.||+||++. ++
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~v~~d~~~L~~il~NLl~NAik~~~~-~~ 251 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQ--PIHMVYVPSHLYHMLFELFKNAMRATVE-SH 251 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCC--CeEEEecHHHHHHHHHHHHHHHHHHhhh-cc
Confidence 7 8999999999999999998876 888888743 222 2579999999999999999999999987 44
Q ss_pred -------eEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-CC-----------CCccchHHHHHH
Q 001353 999 -------WVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-WT-----------TPEGLGLKLSRK 1059 (1093)
Q Consensus 999 -------~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~~-----------~GtGLGL~ivr~ 1059 (1093)
.|.|.+...++ .+.|+|+|+|+|||++.+++||+|||+ +. .|+||||+|||.
T Consensus 252 ~~~~~~~~I~I~~~~~~~---------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~ 322 (394)
T 2btz_A 252 ESSLILPPIKVMVALGEE---------DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRL 322 (394)
T ss_dssp TTCSCCCCEEEEEEECSS---------EEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------CCHHHHHHH
T ss_pred ccCCCCCCEEEEEEeCCC---------EEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCCCCccCCHHHHHH
Confidence 69999988887 999999999999999999999999998 32 499999999999
Q ss_pred HHHHcCCEEEEEeeCC-eeEEEEEEeecC
Q 001353 1060 LLIMMNGRVRYVRENS-KCYFVIDLELKT 1087 (1093)
Q Consensus 1060 ive~hgG~I~v~S~~g-gt~F~v~LPlp~ 1087 (1093)
+++.|||+|++.|.+| ||+|+|+||...
T Consensus 323 i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2btz_A 323 YAKYFQGDLQLFSMEGFGTDAVIYLKALS 351 (394)
T ss_dssp HHHHTTCEEEEEEETTTEEEEEEEEESST
T ss_pred HHHHhCCEEEEEecCCCceEEEEEecCCC
Confidence 9999999999999987 599999999765
No 16
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.95 E-value=2.4e-27 Score=276.79 Aligned_cols=209 Identities=12% Similarity=0.186 Sum_probs=179.2
Q ss_pred HHHHHHHHhhhh-----HHHHHHHHHHHHhcCC----CCHHHHHHHH--HHHHHHHHHHHHHhc-cc-ccccccCccccc
Q 001353 864 KELAYIRQEVKN-----PLNGIRFVHKLLESSS----ISENQRQYLE--TSDACERQIMTIIDG-MD-LRCIEEGNMELK 930 (1093)
Q Consensus 864 ~~la~isHELrn-----PLt~I~g~~~LL~~~~----l~~~~~~~l~--~i~~~~~rl~~lI~d-Ld-lsrie~g~~~l~ 930 (1093)
++++.++||||| ||+.|.++++++.... ..++.+++++ .+.....+| +|++ |+ ++++ .+...+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~~ 173 (394)
T 2e0a_A 97 SDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPSH 173 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTTS
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCCc
Confidence 457788899999 8999999999887542 3455678888 588888899 8888 66 6776 6666666
Q ss_pred e----eeeeHHHHHHHHHHHHHHHhccC-----CeEEEeec---CCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCC
Q 001353 931 S----EEFLLGNILDAVVSQVMVLLRDK-----NLHLLHDI---PEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDG 998 (1093)
Q Consensus 931 ~----~~v~L~~ll~~v~~~~~~~~~~~-----~i~l~~~~---~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g 998 (1093)
. +++++.+++++++..+...+..+ ++.+.++. +.. ...+.+|+..|.|||.|||.||+||++. ++
T Consensus 174 ~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~v~~d~~~L~~il~NLl~NAik~~~~-~~ 250 (394)
T 2e0a_A 174 IGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQ--PIHIVYVPSHLHHMLFELFKNAMRATVE-HQ 250 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHH-HT
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCC--CeEEEEcHHHHHHHHHHHHHHHHHHHHh-cc
Confidence 6 89999999999999999988877 88888853 222 2579999999999999999999999876 33
Q ss_pred -------eEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-CC------------CCccchHHHHH
Q 001353 999 -------WVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-WT------------TPEGLGLKLSR 1058 (1093)
Q Consensus 999 -------~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~~------------~GtGLGL~ivr 1058 (1093)
.|.|.+...++ .+.|+|+|+|+|||++.+++||++||+ +. .|+||||+|||
T Consensus 251 ~~~~~~~~I~I~~~~~~~---------~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~~ 321 (394)
T 2e0a_A 251 ENQPSLTPIEVIVVLGKE---------DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPISR 321 (394)
T ss_dssp TTSSSCCCEEEEEEECSS---------EEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHHH
T ss_pred cccCCCCCEEEEEEeCCC---------EEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHHHHH
Confidence 69999988887 999999999999999999999999998 22 49999999999
Q ss_pred HHHHHcCCEEEEEeeCC-eeEEEEEEeecC
Q 001353 1059 KLLIMMNGRVRYVRENS-KCYFVIDLELKT 1087 (1093)
Q Consensus 1059 ~ive~hgG~I~v~S~~g-gt~F~v~LPlp~ 1087 (1093)
.+++.|||+|++.|.+| ||+|+|+||...
T Consensus 322 ~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 351 (394)
T 2e0a_A 322 LYAKYFQGDLNLYSLSGYGTDAIIYLKALS 351 (394)
T ss_dssp HHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred HHHHHhCCEEEEEecCCccEEEEEEeCCCC
Confidence 99999999999999987 599999999864
No 17
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=99.95 E-value=3.6e-28 Score=249.88 Aligned_cols=164 Identities=35% Similarity=0.587 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCC-CCCCccCCccCCCCchHHHHHhHhcCCeEEEecCCCCC
Q 001353 231 IGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS-DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIP 309 (1093)
Q Consensus 231 ~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~-~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~ 309 (1093)
++++++++++++++++|+|||+||+|++|++|++++|++.+ .++|++|.+||.+|+|.+++.+|.++++|+|.|++..+
T Consensus 1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~ 80 (172)
T 2k2n_A 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (172)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeeccccc
Confidence 47899999999999999999999999999999999999987 47999999999999999999999999999999999998
Q ss_pred ccccc--ccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCCCCCchHHHHHHH
Q 001353 310 VMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387 (1093)
Q Consensus 310 ~~l~~--~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~~~~~~~r~~~~~ 387 (1093)
+.++| ...+++|++++.+..++.+|||.+|++++|++|.|+|||+.+| ++||+|.||||.||.|+.+++.+++.
T Consensus 81 ~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~~----~l~G~l~~~~~~~~~~~~~e~~~l~~ 156 (172)
T 2k2n_A 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQ----ELWGLLVSHHAEPRPYSQEELQVVQL 156 (172)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSCSS----CCCEEEEEEECSCCCCCHHHHHHHHH
T ss_pred cccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEEEEECC----EEEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 88776 4678999999999999999999999999999999999999888 99999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 001353 388 LVQAFSLQLYM 398 (1093)
Q Consensus 388 l~~~~~~~l~~ 398 (1093)
+|.++|+.|.+
T Consensus 157 la~~~a~ai~~ 167 (172)
T 2k2n_A 157 LADQVSIAIAQ 167 (172)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998854
No 18
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.95 E-value=3.9e-27 Score=276.24 Aligned_cols=209 Identities=13% Similarity=0.127 Sum_probs=174.9
Q ss_pred HHHHHHHHhhhh-----HHHHHHHHHHHHhcCCCC----HHHHHHHHH--HHHHHHHHHHHHhc-cccccccc----C--
Q 001353 864 KELAYIRQEVKN-----PLNGIRFVHKLLESSSIS----ENQRQYLET--SDACERQIMTIIDG-MDLRCIEE----G-- 925 (1093)
Q Consensus 864 ~~la~isHELrn-----PLt~I~g~~~LL~~~~l~----~~~~~~l~~--i~~~~~rl~~lI~d-Ldlsrie~----g-- 925 (1093)
.|.+ ++||||| ||+.|.++++++.....+ ++.+++++. +.....+| +|++ |++++.+. +
T Consensus 108 ~f~~-~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~~ 184 (407)
T 2q8g_A 108 DFTD-TVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSHR 184 (407)
T ss_dssp HHHH-HHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC----------
T ss_pred HHHH-HHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCCc
Confidence 4444 4599999 999999999988764332 344677887 66777888 8999 69998865 2
Q ss_pred -ccccceeeeeHHHHHHHHHHHHHHHhccC-----CeEEEeec---CCCccceEEEecHHHHHHHHHHHHHHHHHcCCCC
Q 001353 926 -NMELKSEEFLLGNILDAVVSQVMVLLRDK-----NLHLLHDI---PEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSP 996 (1093)
Q Consensus 926 -~~~l~~~~v~L~~ll~~v~~~~~~~~~~~-----~i~l~~~~---~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~ 996 (1093)
...+..+++++.+++++++..+...+..+ ++.+.+++ ++. ...+.+|+..|.|||.|||.||+||++.
T Consensus 185 ~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~v~~d~~~L~~il~NLl~NAik~t~~- 261 (407)
T 2q8g_A 185 KHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQ--PIQVVYVPSHLYHMVFELFKNAMRATME- 261 (407)
T ss_dssp CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCC--CeEEEEcHHHHHHHHHHHHHHHHHHHhh-
Confidence 56677899999999999999999988877 89888876 222 2579999999999999999999999986
Q ss_pred CC-------eEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-CC------------CCccchHHH
Q 001353 997 DG-------WVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-WT------------TPEGLGLKL 1056 (1093)
Q Consensus 997 ~g-------~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~~------------~GtGLGL~i 1056 (1093)
++ .|.|.+...++ .+.|+|.|+|+|||++.+++||++||+ +. +|+||||+|
T Consensus 262 ~~~~~~~~~~I~I~~~~~~~---------~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~I 332 (407)
T 2q8g_A 262 HHANRGVYPPIQVHVTLGNE---------DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPI 332 (407)
T ss_dssp HSTTTCCCCCEEEEEEECSS---------EEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHH
T ss_pred ccccCCCCCCEEEEEEeCCC---------EEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHHH
Confidence 44 79999988877 999999999999999999999999998 22 599999999
Q ss_pred HHHHHHHcCCEEEEEeeCC-eeEEEEEEeecC
Q 001353 1057 SRKLLIMMNGRVRYVRENS-KCYFVIDLELKT 1087 (1093)
Q Consensus 1057 vr~ive~hgG~I~v~S~~g-gt~F~v~LPlp~ 1087 (1093)
||.+++.|||+|++.|.+| ||+|+|+||...
T Consensus 333 vr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 364 (407)
T 2q8g_A 333 SRLYAQYFQGDLKLYSLEGYGTDAVIYIKALS 364 (407)
T ss_dssp HHHHHHHTTCEEEEEEETTTEEEEEEEEESSG
T ss_pred HHHHHHHhCCEEEEEEcCCCceEEEEEECCCC
Confidence 9999999999999999987 599999999854
No 19
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.94 E-value=1.6e-26 Score=271.93 Aligned_cols=209 Identities=16% Similarity=0.137 Sum_probs=166.5
Q ss_pred HHHHHHHHhhhhHHH-----HHHHHHHHHhcCCC----CHHHHHHHHHHHHH--HHHHHHHHhc-cccc-ccccCcccc-
Q 001353 864 KELAYIRQEVKNPLN-----GIRFVHKLLESSSI----SENQRQYLETSDAC--ERQIMTIIDG-MDLR-CIEEGNMEL- 929 (1093)
Q Consensus 864 ~~la~isHELrnPLt-----~I~g~~~LL~~~~l----~~~~~~~l~~i~~~--~~rl~~lI~d-Ldls-rie~g~~~l- 929 (1093)
+|. .++|||||||+ .|.|+++++..... .++.+++++.+... ..+| +|++ |.+. +.+.+....
T Consensus 120 ~f~-~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~~~ 196 (419)
T 1y8o_A 120 NFL-QVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHPKH 196 (419)
T ss_dssp HHH-HHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSSTTS
T ss_pred HHH-HHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCCCc
Confidence 454 56699999999 77999998876322 24456677775544 6677 8888 4444 333333322
Q ss_pred ---ceeeeeHHHHHHHHHHHHHHHhcc-----CCeEEEeec---CCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCC
Q 001353 930 ---KSEEFLLGNILDAVVSQVMVLLRD-----KNLHLLHDI---PEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDG 998 (1093)
Q Consensus 930 ---~~~~v~L~~ll~~v~~~~~~~~~~-----~~i~l~~~~---~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g 998 (1093)
..+++++.+++++++..+...+.. +++.+.+.. ++. ...+.+|+..|.|||.|||.||+||++. ++
T Consensus 197 ~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~--~~~v~~d~~~L~~vl~NLl~NAik~~~~-~~ 273 (419)
T 1y8o_A 197 IGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDK--PIQVVYVPSHLFHMLFELFKNSMRATVE-LY 273 (419)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCC--CeEEEEcHHHHHHHHHHHHHHHHHHHHh-hc
Confidence 348999999999999999888765 678887643 222 2579999999999999999999999876 33
Q ss_pred --------eEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-C------------CCCccchHHHH
Q 001353 999 --------WVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-W------------TTPEGLGLKLS 1057 (1093)
Q Consensus 999 --------~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~------------~~GtGLGL~iv 1057 (1093)
.|.|.+...++ .+.|+|+|+|+|||++.+++||+|||+ + ..|+||||+||
T Consensus 274 ~~~~~~~~~I~I~~~~~~~---------~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~ 344 (419)
T 1y8o_A 274 EDRKEGYPAVKTLVTLGKE---------DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPIS 344 (419)
T ss_dssp TTCSSCCCCEEEEEEECSS---------EEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHH
T ss_pred cccCCCCCCEEEEEEeCCC---------EEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCCcCCeecCHHHH
Confidence 79999988877 999999999999999999999999998 2 24999999999
Q ss_pred HHHHHHcCCEEEEEeeCC-eeEEEEEEeecC
Q 001353 1058 RKLLIMMNGRVRYVRENS-KCYFVIDLELKT 1087 (1093)
Q Consensus 1058 r~ive~hgG~I~v~S~~g-gt~F~v~LPlp~ 1087 (1093)
|.+++.|||+|+++|.+| ||+|+|+||...
T Consensus 345 k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~~ 375 (419)
T 1y8o_A 345 RLYARYFQGDLKLYSMEGVGTDAVIYLKALS 375 (419)
T ss_dssp HHHHHHTTCEEEEEEETTTEEEEEEEEESCG
T ss_pred HHHHHHhCCEEEEEecCCCCEEEEEEecCCC
Confidence 999999999999999987 599999999864
No 20
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.94 E-value=8.1e-27 Score=247.35 Aligned_cols=182 Identities=32% Similarity=0.537 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCC-CCCCccCCccCCCCchHH
Q 001353 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS-DLEPYLGIHFPANDIPQA 289 (1093)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~-~~~~~lg~~~p~~dip~~ 289 (1093)
+..+++.++..+|.+ +.|++++++++++++++++|+|||+||.|++|++|++++|+..+ ++++++|.+||.+|+|.+
T Consensus 13 ~~~~~L~~i~~~i~~--~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~ 90 (208)
T 2lb5_A 13 SRDALINRITHQIRQ--SLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEE 90 (208)
T ss_dssp --------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEGGGCCSH
T ss_pred HHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCChhhCcHH
Confidence 455667778888888 77999999999999999999999999999999999999999987 589999999999999999
Q ss_pred HHHhHhcCCeEEEecCCCCCccccc--ccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEE
Q 001353 290 ARFLFKQNRVRMICDCHAIPVMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLV 367 (1093)
Q Consensus 290 ~r~l~~~~~~r~i~d~~~~~~~l~~--~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~ 367 (1093)
++.+|..+++|+|.|+...++.++| ...+++|++++.+..++.+|||.+|++++|++|.|+|||+.+| ++||+|
T Consensus 91 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~~~----~l~GvL 166 (208)
T 2lb5_A 91 ARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQ----ELWGLL 166 (208)
T ss_dssp HHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEETT----EEEEEE
T ss_pred HHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEECC----EeEEEE
Confidence 9999999999999999999888766 3578899999999999999999999999999999999999998 999999
Q ss_pred EeecCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 001353 368 VCHHTSPRYIPFPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 368 ~~h~~~p~~~~~~~r~~~~~l~~~~~~~l~~ 398 (1093)
.+|+|+||.|+.+++.+++.+|.++++.|..
T Consensus 167 ~~~~~~~~~~~~~e~~ll~~la~~~a~ai~~ 197 (208)
T 2lb5_A 167 VSHHAEPRPYSQEELQVVQLLADQVSIAIAQ 197 (208)
T ss_dssp EEEESCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999854
No 21
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.91 E-value=3e-23 Score=222.85 Aligned_cols=199 Identities=14% Similarity=0.059 Sum_probs=168.3
Q ss_pred cEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccCCcEEE
Q 001353 630 PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVY 709 (1093)
Q Consensus 630 ~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG~~~~ 709 (1093)
.|+++|.+|+|+++|+++++++||++++++|++.. .+.++.........+...+..+.....++.. .++||..+|
T Consensus 1 ~i~i~D~~g~i~~~N~a~~~l~Gy~~~el~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~~~dG~~~~ 75 (227)
T 3ewk_A 1 LVSITDLQGRILYANDNFCAVSRYGREELVGQDHR-IVNSGYHGKAYIRDMWRTISRGNIWQGEFCN----RRKDGTRYW 75 (227)
T ss_dssp CEEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGG-GGCCSCSCHHHHHHHHHHHTTTCCEEEEEEE----ECSSSCEEE
T ss_pred CEEEECCCCcEEehHHHHHHHHCcCHHHHcCCCHH-HcCCCCCCHHHHHHHHHHHHcCCeEEEEEEE----EcCCCCEEe
Confidence 37889999999999999999999999999999987 6665544444444444555555554444443 578999999
Q ss_pred EEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCc
Q 001353 710 ILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMR 789 (1093)
Q Consensus 710 v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~ 789 (1093)
+.++..|++|.+|++.+++++.+|||++|++|++|++ ++.++++.++ +|++.|.+|+++++|+++++++||++
T Consensus 76 ~~~~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l~~----~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~G~~~ 148 (227)
T 3ewk_A 76 VDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLAR----LKQAMDANSE---MILLTDRAGRIIYANPALCRFSGMAE 148 (227)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEECTTTTHHHHHHHH----HHHHHHTCCS---EEEEECTTSCEEEECHHHHHHHTCCT
T ss_pred eeeEEEEEEcCCCCEEEEEEEEEehhhHHHHHHHHHH----HHHHHhcCcC---eEEEEcCCCcEEEEchHHHHHhCCCH
Confidence 9999999999999999999999999999999999865 4567788887 89999999999999999999999999
Q ss_pred chhcc----------------------ccCCCccceeeEEEccCCc------EEEEEEEEeEeecCCCcEEEEEEEEee
Q 001353 790 HEVIG----------------------ITGQGTENFPFGFFNRQGQ------FVEVALTASRRTDAEGKVIGCFCFMQI 840 (1093)
Q Consensus 790 eEliG----------------------~~~~~~~~~e~~~~~kdG~------~~~v~~~~~~i~d~~G~v~g~i~~~~D 840 (1093)
+|++| ...+..+..++..++++|+ .+|+.+++.|+.|.+|.+++++++.+|
T Consensus 149 ~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 149 GELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp HHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSSCEEEEEEEEEC
T ss_pred HHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCCCCEEEEEEEecC
Confidence 99999 1223345667888899887 899999999999999999999999987
No 22
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.90 E-value=1.1e-22 Score=203.71 Aligned_cols=148 Identities=20% Similarity=0.333 Sum_probs=133.2
Q ss_pred ceeeeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCc
Q 001353 930 KSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLK 1009 (1093)
Q Consensus 930 ~~~~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~ 1009 (1093)
+.+++++.+++++++..+...+..+++.+.++++++. ..+.+|+..|.++|.||+.||++|++. ++.|.|++...++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~i~~d~~~l~~il~nll~NAi~~~~~-~~~I~i~~~~~~~ 78 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNED--LRVEADRTRIKQVLINLVQNAIEATGE-NGKIKITSEDMYT 78 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSS--CEEEECHHHHHHHHHHHHHHHHHHHCT-TCEEEEEEEECSS
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCC--cEEEECHHHHHHHHHHHHHHHHHhcCC-CCEEEEEEEecCC
Confidence 4678999999999999999999999999999887652 468999999999999999999999976 7899999988877
Q ss_pred cccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-CCCCccchHHHHHHHHH-HcCCEEEEEeeCCeeEEEEEEeecC
Q 001353 1010 LIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-WTTPEGLGLKLSRKLLI-MMNGRVRYVRENSKCYFVIDLELKT 1087 (1093)
Q Consensus 1010 ~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~~~GtGLGL~ivr~ive-~hgG~I~v~S~~ggt~F~v~LPlp~ 1087 (1093)
.+.|+|.|+|+|||++.++++|+||++ +..|+||||++||++++ .|||++.+.+.++|++|++.||+..
T Consensus 79 ---------~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~~g~GlGL~i~~~~~~~~~gg~~~~~~~~~g~~~~i~lP~~~ 149 (152)
T 3a0y_A 79 ---------KVRVSVWNSGPPIPEELKEKIFSPFFTTKTQGTGLGLSICRKIIEDEHGGKIWTENRENGVVFIFEIPKTP 149 (152)
T ss_dssp ---------EEEEEEEEESCCCCGGGTTGGGSTTCCCC--CCCCSHHHHHHHHHTTTSCEEEEEEETTEEEEEEEEESCC
T ss_pred ---------EEEEEEEeCCCCcCHHHHHhHhhhhccCCCCCCCcCHHHHHHHHHHhCCcEEEEecCCCCEEEEEEeCCCC
Confidence 899999999999999999999999988 66799999999999999 9999999999988999999999865
Q ss_pred Cc
Q 001353 1088 RG 1089 (1093)
Q Consensus 1088 ~~ 1089 (1093)
.+
T Consensus 150 ~~ 151 (152)
T 3a0y_A 150 EK 151 (152)
T ss_dssp --
T ss_pred CC
Confidence 43
No 23
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.89 E-value=3.8e-23 Score=239.58 Aligned_cols=195 Identities=16% Similarity=0.163 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcc-cccccccCccccceeeeeHHHH
Q 001353 861 AKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGM-DLRCIEEGNMELKSEEFLLGNI 939 (1093)
Q Consensus 861 ~k~~~la~isHELrnPLt~I~g~~~LL~~~~l~~~~~~~l~~i~~~~~rl~~lI~dL-dlsrie~g~~~l~~~~v~L~~l 939 (1093)
.|.+++.+++|||++|++.+.++.+.+.. +.+.+..+++.+++++| ++.. ....+++..+
T Consensus 9 ~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~~~ 69 (379)
T 1b3q_A 9 EKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVM--------KIRMVPISFV 69 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHHHH
Confidence 47789999999999999999877665543 45667778888888884 5542 2356788899
Q ss_pred HHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHH---HHHHHHHHHHHHHHHcC------------CCCCCeEEEEE
Q 001353 940 LDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRI---RLQLVLSDFLHCVVRHA------------PSPDGWVEIKV 1004 (1093)
Q Consensus 940 l~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~---~L~qVl~nLl~NAik~t------------~~~~g~I~I~v 1004 (1093)
+..+...++..+...+.++.++++.+. +..|+. ++.++|.||+.||++|+ +. +|.|+|++
T Consensus 70 ~~~~~~~~~~~~~~~~~~v~l~~~~~~----~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~-~g~I~i~~ 144 (379)
T 1b3q_A 70 FNRFPRMVRDLAKKMNKEVNFIMRGED----TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPP-IGTLILSA 144 (379)
T ss_dssp HTTHHHHHHHHHHHTTCCEEEEEECTT----CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCS-SEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEcCCC----eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCC-CcEEEEEE
Confidence 999999888888776666666665431 345764 55666999999999997 44 79999999
Q ss_pred EeCCccccCCCceeEEEEEEecCCCCCChhhH------------------------hhhccCCCC-C-----CCCccchH
Q 001353 1005 LPGLKLIKDADQFVHVQFRLTHPGEGIPSHLI------------------------EDMYNGRNQ-W-----TTPEGLGL 1054 (1093)
Q Consensus 1005 ~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~------------------------~~IFe~F~~-~-----~~GtGLGL 1054 (1093)
...++ ++.|+|+|||+|||++.+ ++||+|||+ + .+|+|+||
T Consensus 145 ~~~~~---------~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~~~~~~G~GlGL 215 (379)
T 1b3q_A 145 RHEGN---------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGM 215 (379)
T ss_dssp EEETT---------EEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC-----------CCCS
T ss_pred EEeCC---------EEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCccCCCCCccccH
Confidence 88887 999999999999999987 899999887 2 35999999
Q ss_pred HHHHHHHHHcCCEEEEEeeCC-eeEEEEEEeecCC
Q 001353 1055 KLSRKLLIMMNGRVRYVRENS-KCYFVIDLELKTR 1088 (1093)
Q Consensus 1055 ~ivr~ive~hgG~I~v~S~~g-gt~F~v~LPlp~~ 1088 (1093)
++||++++.|||+|+++|.+| ||+|+++||+..+
T Consensus 216 ~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~~ 250 (379)
T 1b3q_A 216 DVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTLA 250 (379)
T ss_dssp HHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSCE
T ss_pred HHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCccc
Confidence 999999999999999999998 5999999998764
No 24
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.89 E-value=2.3e-22 Score=214.45 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHhcc-cccccccCccccceeeeeH
Q 001353 860 YAKIKELAYIRQEVKNPLNGIRFVHKLLESS--SISENQRQYLETSDACERQIMTIIDGM-DLRCIEEGNMELKSEEFLL 936 (1093)
Q Consensus 860 ~~k~~~la~isHELrnPLt~I~g~~~LL~~~--~l~~~~~~~l~~i~~~~~rl~~lI~dL-dlsrie~g~~~l~~~~v~L 936 (1093)
..+.++...++|++++||++|..+++++... ...+...+.+..+....+++...+.++ .. ..+.++
T Consensus 26 ~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~-----------~~~~~l 94 (218)
T 3ehh_A 26 EERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSS-----------MKGIRL 94 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------TCCCCH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCcCH
Confidence 3456788899999999999999999988752 233445667777777777766666653 11 134577
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCccccCCCc
Q 001353 937 GNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQ 1016 (1093)
Q Consensus 937 ~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~ 1016 (1093)
.+.+..+...+ ...++.+.++++...+. ....+...|.+|+.||+.||+||+++ +.|.|++...++
T Consensus 95 ~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~l~~il~nll~Na~k~~~~--~~i~i~~~~~~~------- 160 (218)
T 3ehh_A 95 KDELINIKQIL----EAADIMFIYEEEKWPEN-ISLLNENILSMCLKEAVTNVVKHSQA--KTCRVDIQQLWK------- 160 (218)
T ss_dssp HHHHHHHHHHH----HHTTCEEECCCCCCCSC-CCHHHHHHHHHHHHHHHHHHHHHTCC--SEEEEEEEEETT-------
T ss_pred HHHHHHHHHHH----HhcCCEEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhCCC--CEEEEEEEEeCC-------
Confidence 77777766655 45678888887765432 34567888999999999999999975 899999988887
Q ss_pred eeEEEEEEecCCCCCChhhHhhhccCCCCCCCCccchHHHHHHHHHHcCCEEEEEeeCCeeEEEEEEeecC
Q 001353 1017 FVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKT 1087 (1093)
Q Consensus 1017 ~~~v~l~V~DnG~GIp~e~~~~IFe~F~~~~~GtGLGL~ivr~ive~hgG~I~v~S~~ggt~F~v~LPlp~ 1087 (1093)
.+.|+|.|||+|||++.. .|+||||++||++++.|||+|++.|.+ ||+|+|+||++.
T Consensus 161 --~~~i~V~D~G~Gi~~~~~-----------~g~GlGL~~~~~~v~~~gG~i~~~s~~-Gt~~~i~lP~~~ 217 (218)
T 3ehh_A 161 --EVVITVSDDGTFKGEENS-----------FSKGHGLLGMRERLEFANGSLHIDTEN-GTKLTMAIPNNS 217 (218)
T ss_dssp --EEEEEEEESSCCCC-------------------CHHHHHHHHHHHTTCEEEEECSS-SEEEEEEEEC--
T ss_pred --EEEEEEEECCcCCCCCCC-----------CCCCCCHHHHHHHHHHcCCEEEEeCCC-CeEEEEEEecCC
Confidence 899999999999999865 689999999999999999999999999 999999999864
No 25
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.89 E-value=4.9e-22 Score=199.24 Aligned_cols=144 Identities=18% Similarity=0.279 Sum_probs=129.8
Q ss_pred eeeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCccc
Q 001353 932 EEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLI 1011 (1093)
Q Consensus 932 ~~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~ 1011 (1093)
+++++.+++++++..+...+..+++.+.++++++ ..+.+|+..|.+||.||+.||++|++. .|.|++...++
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~d~~~l~~il~nLl~NAi~~~~~---~i~i~~~~~~~-- 73 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPE---ISFVGEQNDFVEVMGNVLDNACKYCLE---FVEISARQTDE-- 73 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTT---CEEESCHHHHHHHHHHHHHHHHHHCSS---EEEEEEEECSS--
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCC---ceEeeCHHHHHHHHHHHHHHHHHhCcC---eEEEEEEecCC--
Confidence 5899999999999999999999999999998876 358899999999999999999999974 88888888777
Q ss_pred cCCCceeEEEEEEecCCCCCChhhHhhhccCCCC---CCCCccchHHHHHHHHHHcCCEEEEEeeCC-eeEEEEEEeecC
Q 001353 1012 KDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ---WTTPEGLGLKLSRKLLIMMNGRVRYVRENS-KCYFVIDLELKT 1087 (1093)
Q Consensus 1012 ~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~---~~~GtGLGL~ivr~ive~hgG~I~v~S~~g-gt~F~v~LPlp~ 1087 (1093)
.+.|+|.|+|+|||++.++++|+||++ ...|+||||++|+++++.|||++++.+.++ |++|+|.||++.
T Consensus 74 -------~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~ 146 (152)
T 1id0_A 74 -------HLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQH 146 (152)
T ss_dssp -------CEEEEEEESSSCCCGGGTTGGGSCCCCTTCCCTTCCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEECCCC
T ss_pred -------EEEEEEEeCCCCcCHHHHHHHhccceeccCCCCCcccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeccc
Confidence 899999999999999999999999987 357899999999999999999999999885 599999999876
Q ss_pred Ccc
Q 001353 1088 RGR 1090 (1093)
Q Consensus 1088 ~~~ 1090 (1093)
...
T Consensus 147 ~~~ 149 (152)
T 1id0_A 147 SAP 149 (152)
T ss_dssp ---
T ss_pred cCC
Confidence 554
No 26
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.88 E-value=6.2e-22 Score=198.27 Aligned_cols=141 Identities=15% Similarity=0.211 Sum_probs=119.9
Q ss_pred ceeeeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCc
Q 001353 930 KSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLK 1009 (1093)
Q Consensus 930 ~~~~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~ 1009 (1093)
+.+++++.+++++++..+..... ++.+.++.+.. ..+.+|+..|.++|.||+.||+||++. +.|.|++...++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~--~~~i~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~--~~I~i~~~~~~~ 76 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIYP--DLDVSLVPSPT---CIIVGLPAGLRLAVDNAIANAVKHGGA--TLVQLSAVSSRA 76 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHST--TCEEEECSCCC---CEEEECHHHHHHHHHHHHHHHHHTTCC--SEEEEEEEEETT
T ss_pred cccccCHHHHHHHHHHHHHHhcc--CCceEEccCCC---ceEecCHHHHHHHHHHHHHHHHhcCCC--cEEEEEEEecCC
Confidence 46899999999999999887664 45666665543 468999999999999999999999986 699999888877
Q ss_pred cccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC----CCCCccchHHHHHHHHHHcCCEEEEEeeCC-eeEEEEEEe
Q 001353 1010 LIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ----WTTPEGLGLKLSRKLLIMMNGRVRYVRENS-KCYFVIDLE 1084 (1093)
Q Consensus 1010 ~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~----~~~GtGLGL~ivr~ive~hgG~I~v~S~~g-gt~F~v~LP 1084 (1093)
.+.|+|.|+|+|||++.++++|+||++ +..|+||||++|+++++.|||+|++.+.++ |++|+|.||
T Consensus 77 ---------~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP 147 (150)
T 1ysr_A 77 ---------GVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLP 147 (150)
T ss_dssp ---------EEEEEEEESSSCCCGGGHHHHHTSCC-----------CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEE
T ss_pred ---------EEEEEEEECCCCCCHHHHHHHhcccccCCCCCCCCCCcCHHHHHHHHHHcCCEEEEeecCCCCEEEEEEEe
Confidence 899999999999999999999999986 456899999999999999999999999876 599999999
Q ss_pred ec
Q 001353 1085 LK 1086 (1093)
Q Consensus 1085 lp 1086 (1093)
++
T Consensus 148 ~~ 149 (150)
T 1ysr_A 148 GP 149 (150)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 27
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.87 E-value=6.7e-22 Score=199.68 Aligned_cols=156 Identities=17% Similarity=0.293 Sum_probs=113.6
Q ss_pred ccceeeeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeC
Q 001353 928 ELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007 (1093)
Q Consensus 928 ~l~~~~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~ 1007 (1093)
.++.+++++.+++++++..+... ..+++.+.+++++..+ .+.+|+..|.+++.||+.||+||++..++.|.|++...
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~--~i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~ 78 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLP--ELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTA 78 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCC--CEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCC--eeeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEecc
Confidence 34678999999999999999887 7788999999988765 38899999999999999999999873248888887655
Q ss_pred Cccc-cCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-CCCCccchHHHHHHHHHHcCCEEEEEeeCCeeEEEEEEee
Q 001353 1008 LKLI-KDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-WTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 1085 (1093)
Q Consensus 1008 ~~~~-~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~~~GtGLGL~ivr~ive~hgG~I~v~S~~ggt~F~v~LPl 1085 (1093)
.+.. ........+.|+|.|+|+||+++.++++|+||++ +..|+||||++|+++++.|||+++++|.+++++|+|.||+
T Consensus 79 ~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~~g~GlGL~i~~~~~~~~gG~l~i~s~~~~~~~~i~lP~ 158 (160)
T 1r62_A 79 FQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFSVYLPI 158 (160)
T ss_dssp EEEEETTEEEEEEEEEEEEEECTTC--------------------CHHHHHHHHHHHHTTCEEEEEEETTEEEEEEEEEE
T ss_pred ccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCEEEEEEEec
Confidence 3300 0111123789999999999999999999999988 6679999999999999999999999999988999999997
Q ss_pred c
Q 001353 1086 K 1086 (1093)
Q Consensus 1086 p 1086 (1093)
.
T Consensus 159 ~ 159 (160)
T 1r62_A 159 R 159 (160)
T ss_dssp E
T ss_pred c
Confidence 5
No 28
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.86 E-value=5.1e-21 Score=197.34 Aligned_cols=145 Identities=14% Similarity=0.299 Sum_probs=124.8
Q ss_pred eeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEE--EeCCcc
Q 001353 933 EFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKV--LPGLKL 1010 (1093)
Q Consensus 933 ~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v--~~~~~~ 1010 (1093)
+++|.++++.++..+... ..+++.+.+++++.. ..+.+|+..|.+||.|||.||++|++. +|.|.|.+ ...++
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~--~~~~~d~~~l~~il~nLl~NAi~~~~~-~~~i~I~i~~~~~~~- 76 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRD--LYVEIDQDKITQVLDNIISNALKYSPE-GGHVTFSIDVNEEEE- 76 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSSC--CEEESCHHHHHHHHHHHHHHHHHTCCT-TCCEEEEEEEETTTT-
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCCC--cEEEeCHHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEEccCCC-
Confidence 689999999999999988 788899999888753 468999999999999999999999987 78888777 44455
Q ss_pred ccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-------CCCCccchHHHHHHHHHHcCCEEEEEeeCC-eeEEEEE
Q 001353 1011 IKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-------WTTPEGLGLKLSRKLLIMMNGRVRYVRENS-KCYFVID 1082 (1093)
Q Consensus 1011 ~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-------~~~GtGLGL~ivr~ive~hgG~I~v~S~~g-gt~F~v~ 1082 (1093)
.+.|+|.|||+|||++.++++|++|++ +..|+||||++|+++++.|||+|++.+.++ |++|+|.
T Consensus 77 --------~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~~~Gt~~~i~ 148 (177)
T 3sl2_A 77 --------LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFT 148 (177)
T ss_dssp --------EEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHHHHHHHHTTCCEEEEEETTTEEEEEEE
T ss_pred --------EEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHHHHHHHHcCCEEEEEecCCCCeEEEEE
Confidence 899999999999999999999999986 345899999999999999999999999887 5999999
Q ss_pred EeecCCcc
Q 001353 1083 LELKTRGR 1090 (1093)
Q Consensus 1083 LPlp~~~~ 1090 (1093)
||+.....
T Consensus 149 lP~~~~~~ 156 (177)
T 3sl2_A 149 LPYKEEQE 156 (177)
T ss_dssp EEEEC---
T ss_pred EeCCCCcc
Confidence 99976543
No 29
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.86 E-value=4.8e-21 Score=194.26 Aligned_cols=146 Identities=14% Similarity=0.205 Sum_probs=124.7
Q ss_pred ccceeeeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeC
Q 001353 928 ELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007 (1093)
Q Consensus 928 ~l~~~~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~ 1007 (1093)
++..++++|.+++++++..+.. .+..+.++++... ..+.+|+..|.+||.||+.||+||+ . +.|.|++...
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~----~~~~i~~~~~~~~--~~v~~d~~~l~~il~nll~NAik~~-~--~~I~i~~~~~ 74 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAESG----YEREIETALYPGS--IEVKMHPLSIKRAVANMVVNAARYG-N--GWIKVSSGTE 74 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCS----SSCCEEEECCSSC--CCEEECHHHHHHHHHHHHHHHHTTC-C--SCEEEEEEEE
T ss_pred cccccccCHHHHHHHHHHHhhh----hcceEEEEecCCC--ceEEECHHHHHHHHHHHHHHHHhhc-C--CeEEEEEEEc
Confidence 4567899999999999998543 3445555554432 4689999999999999999999999 3 8999999888
Q ss_pred CccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCCC-----CCCccchHHHHHHHHHHcCCEEEEEeeCC-eeEEEE
Q 001353 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQW-----TTPEGLGLKLSRKLLIMMNGRVRYVRENS-KCYFVI 1081 (1093)
Q Consensus 1008 ~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~~-----~~GtGLGL~ivr~ive~hgG~I~v~S~~g-gt~F~v 1081 (1093)
++ .+.|+|.|+|+|||++.++++|+||++. ..|+||||++|+++++.|||+|++.+.++ |++|++
T Consensus 75 ~~---------~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i 145 (161)
T 1bxd_A 75 PN---------RAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRA 145 (161)
T ss_dssp TT---------EEEEEEEEESSCSCTTGGGCSSCCCCCCSCCCCCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEE
T ss_pred CC---------EEEEEEEeCCCCCCHHHHHHhCCCceeCCCCCCCCCcccCHHHHHHHHHHcCCEEEEEECCCCeEEEEE
Confidence 77 8999999999999999999999999982 25899999999999999999999999865 699999
Q ss_pred EEeecCCccC
Q 001353 1082 DLELKTRGRQ 1091 (1093)
Q Consensus 1082 ~LPlp~~~~~ 1091 (1093)
.||++....+
T Consensus 146 ~lP~~~~~~~ 155 (161)
T 1bxd_A 146 WLPVPVTRAQ 155 (161)
T ss_dssp EECCCSCCCC
T ss_pred EEeCCcccCC
Confidence 9999766543
No 30
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.84 E-value=1.8e-20 Score=195.39 Aligned_cols=145 Identities=16% Similarity=0.154 Sum_probs=123.1
Q ss_pred eeeeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcC------------CCCCC
Q 001353 931 SEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHA------------PSPDG 998 (1093)
Q Consensus 931 ~~~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t------------~~~~g 998 (1093)
.+++++.++++.+...+...+..+++.+.++++.... .....+..++.|+|.||+.||+||+ +. ++
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~-~~ 79 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDT-ELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPP-IG 79 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTC-EEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCS-SE
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcc-cccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCC-CC
Confidence 4689999999999999999998888888877765421 1222334667777999999999997 44 78
Q ss_pred eEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhH------------------------hhhccCCCC------CCC
Q 001353 999 WVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLI------------------------EDMYNGRNQ------WTT 1048 (1093)
Q Consensus 999 ~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~------------------------~~IFe~F~~------~~~ 1048 (1093)
.|.|++...++ .+.|+|+|||+|||++.+ +++|+|||+ ...
T Consensus 80 ~I~I~~~~~~~---------~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~~~~~~ 150 (189)
T 1i58_A 80 TLILSARHEGN---------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVS 150 (189)
T ss_dssp EEEEEEEEETT---------EEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHHHHGGG
T ss_pred eEEEEEEecCC---------EEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCcccccccCCCCC
Confidence 99999988877 999999999999999976 999999988 235
Q ss_pred CccchHHHHHHHHHHcCCEEEEEeeCC-eeEEEEEEeec
Q 001353 1049 PEGLGLKLSRKLLIMMNGRVRYVRENS-KCYFVIDLELK 1086 (1093)
Q Consensus 1049 GtGLGL~ivr~ive~hgG~I~v~S~~g-gt~F~v~LPlp 1086 (1093)
|+||||++|+++++.|||+|++.|.++ ||+|+++||++
T Consensus 151 g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lPl~ 189 (189)
T 1i58_A 151 GRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPLT 189 (189)
T ss_dssp TCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECC
T ss_pred CCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEeCC
Confidence 899999999999999999999999977 59999999974
No 31
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.78 E-value=1.2e-18 Score=169.79 Aligned_cols=126 Identities=16% Similarity=0.133 Sum_probs=103.8
Q ss_pred eeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCccccC
Q 001353 934 FLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKD 1013 (1093)
Q Consensus 934 v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~ 1013 (1093)
+++.+.+..+... +..+++++.++.+.+.+. ....+...|.+++.||+.||+||+++ +.|.|++...++
T Consensus 2 v~l~~~l~~~~~~----~~~~~i~~~~~~~~~~~~-~~~~~~~~l~~il~nll~Na~k~~~~--~~i~i~~~~~~~---- 70 (128)
T 3ehg_A 2 IRLKDELINIKQI----LEAADIMFIYEEEKWPEN-ISLLNENILSMCLKEAVTNVVKHSQA--KTCRVDIQQLWK---- 70 (128)
T ss_dssp CCHHHHHHHHHHH----HHHTTCEEECCCCSCCSC-CCHHHHHHHHHHHHHHHHHHHHHTCC--SEEEEEEEEETT----
T ss_pred ccHHHHHHHHHHH----HHHcCCEEEEEcCccccc-cCHHHHHHHHHHHHHHHHHHHhcCCC--cEEEEEEEEeCC----
Confidence 3455555555544 446678888887754332 34567899999999999999999975 899999988887
Q ss_pred CCceeEEEEEEecCCCCCChhhHhhhccCCCCCCCCccchHHHHHHHHHHcCCEEEEEeeCCeeEEEEEEeecC
Q 001353 1014 ADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKT 1087 (1093)
Q Consensus 1014 ~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~~~~GtGLGL~ivr~ive~hgG~I~v~S~~ggt~F~v~LPlp~ 1087 (1093)
.+.++|.|||+|||++.. .|+||||+++|++++.|||+++++|.+ ||+|+++||++.
T Consensus 71 -----~~~i~V~D~G~Gi~~~~~-----------~g~GlGL~~~~~~~~~~gG~i~~~s~~-Gt~~~i~lP~~~ 127 (128)
T 3ehg_A 71 -----EVVITVSDDGTFKGEENS-----------FSKGHGLLGMRERLEFANGSLHIDTEN-GTKLTMAIPNNS 127 (128)
T ss_dssp -----EEEEEEEESSCCCSCSSC-----------CCTTSHHHHHHHHHHHTTCEEEEECSS-SEEEEEEEEC--
T ss_pred -----EEEEEEEECCcCcCcccC-----------CCCCccHHHHHHHHHHcCCEEEEEeCC-CEEEEEEEecCC
Confidence 899999999999998764 589999999999999999999999999 999999999864
No 32
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.72 E-value=4.2e-17 Score=158.51 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=102.8
Q ss_pred eeeeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCcc
Q 001353 931 SEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKL 1010 (1093)
Q Consensus 931 ~~~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~ 1010 (1093)
.++++|.+++.+++..+ ..+++.+.++++...+. ....|+..|.+++.||+.||+||++. +.|.|++...+
T Consensus 2 ~~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~l~~il~nll~NA~k~~~~--~~i~i~~~~~~-- 72 (129)
T 3zxo_A 2 AMVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSV-VDSALADQAEAVVREAVSNAVRHAAA--STLTVRVKVDD-- 72 (129)
T ss_dssp ---CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGG-SCHHHHHHHHHHHHHHHHHCCCCSSC--CEEEEEEEESS--
T ss_pred CccccHHHHHHHHHHHH----hhcCceEEEEecCCccc-CCHHHHHHHHHHHHHHHHHHHHhCCC--ceEEEEEEEcC--
Confidence 35788999999998887 45567777777665442 33455889999999999999999965 88988876542
Q ss_pred ccCCCceeEEEEEEecCCCCCChhhHhhhccCCCCCCCCccchHHHHHHHHHHcCCEEEEEeeCC--eeEEEEEEeec
Q 001353 1011 IKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENS--KCYFVIDLELK 1086 (1093)
Q Consensus 1011 ~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~~~~GtGLGL~ivr~ive~hgG~I~v~S~~g--gt~F~v~LPlp 1086 (1093)
. +.++|.|+|+|||++. +||||++||++++.|||++.+.+.++ |++|+++||++
T Consensus 73 -------~-~~i~v~D~G~gi~~~~--------------~GlGL~i~~~~~~~~gG~i~~~~~~~~~G~~~~i~lP~~ 128 (129)
T 3zxo_A 73 -------D-LCIEVTDNGRGMPDEF--------------TGSGLTNLRQRAEQAGGEFTLASMPGASGTVLRWSAPLS 128 (129)
T ss_dssp -------E-EEEEEEECCCCCTTTT--------------CSHHHHHHHHHHHHTTCEEEEEECTTTCCEEEEEEEESC
T ss_pred -------C-EEEEEecCCCCCCccc--------------CCcCHHHHHHHHHHcCCEEEEeeCCCCCcEEEEEEecCC
Confidence 2 8899999999999875 69999999999999999999999998 69999999986
No 33
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.68 E-value=3e-16 Score=154.71 Aligned_cols=138 Identities=12% Similarity=0.086 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCC--CccccccccccHHHHHHHHHHHHcCCC
Q 001353 611 DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGK--SLIDEVVHEESQGAVENLICRALLGEE 688 (1093)
Q Consensus 611 ~eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~--~~~~~lv~~~~~~~~~~~l~~~l~g~~ 688 (1093)
++|++++++|+.+++++++++|.+|.++.+++||+.+.+++||+++++.+. .+. +++||++.+.+...+..++.++.
T Consensus 2 ~aL~~se~rl~~~~~~~~~g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~-~~ihpdD~~~~~~~~~~~~~~~~ 80 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHR-ESIHPDDRARVLAALKAHLEHRD 80 (142)
T ss_dssp -------CCHHHHHHHTTCEEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC----CCBCTTTHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhCCcEEEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHH-hhcCHHHHHHHHHHHHHHHhCCC
Confidence 457788889999999999999999999999999999999999999988763 345 78999999999999988888777
Q ss_pred CceEEEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHH
Q 001353 689 DKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEA 753 (1093)
Q Consensus 689 ~~~~e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se~~lr~ 753 (1093)
....++++ .+++|..+|+...+.|++|.+|.+.+++++++|||++|++|++|++++++|+.
T Consensus 81 ~~~~e~r~----~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~l~~ 141 (142)
T 3mr0_A 81 TYDVEYRV----RTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREELRR 141 (142)
T ss_dssp CEEEEEEE----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEE----ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHHHhc
Confidence 66666655 46899999999999999999999999999999999999999999999999875
No 34
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.67 E-value=4.5e-16 Score=150.16 Aligned_cols=121 Identities=20% Similarity=0.151 Sum_probs=97.4
Q ss_pred eHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCccccCC
Q 001353 935 LLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDA 1014 (1093)
Q Consensus 935 ~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~ 1014 (1093)
+|.+.+.+++..+ ...++.+.++++...+. ....+...|.+++.||++||+||+++ +.|.|++...+
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~l~~il~nll~Na~k~~~~--~~i~i~~~~~~------ 68 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSV-VDTVLANHAEAVLREAVSNAVRHANA--TSLAINVSVED------ 68 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGG-CCHHHHHHHHHHHHHHHHHHHTCTTC--CEEEEEEEEEE------
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCcccc-ccHHHHHHHHHHHHHHHHHHHHhCCC--CEEEEEEEeCC------
Confidence 4667777777766 45556666666554333 23345889999999999999999986 78888875432
Q ss_pred CceeEEEEEEecCCCCCChhhHhhhccCCCCCCCCccchHHHHHHHHHHcCCEEEEEeeCC-eeEEEEEEeec
Q 001353 1015 DQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENS-KCYFVIDLELK 1086 (1093)
Q Consensus 1015 ~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~~~~GtGLGL~ivr~ive~hgG~I~v~S~~g-gt~F~v~LPlp 1086 (1093)
. +.++|+|||+|||++. .|+||++++++++.|||++.+.+.++ |++|+++||++
T Consensus 69 ---~-~~i~v~D~G~gi~~~~--------------~GlGL~~~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 123 (124)
T 3zxq_A 69 ---D-VRVEVVDDGVGISGDI--------------TESGLRNLRQRADDAGGEFTVENMPTGGTLLRWSAPLR 123 (124)
T ss_dssp ---E-EEEEEEECCCSSCGGG--------------SHHHHHHHHHHHHHHTCEEEEEECTTSSEEEEEEEECC
T ss_pred ---C-EEEEEEECCCCCCccc--------------cccCHHHHHHHHHHhCCEEEEEEcCCCcEEEEEEEecC
Confidence 2 8899999999999986 49999999999999999999999987 59999999986
No 35
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.65 E-value=1.6e-15 Score=174.55 Aligned_cols=215 Identities=10% Similarity=0.060 Sum_probs=154.3
Q ss_pred HHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCc---------
Q 001353 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDK--------- 690 (1093)
Q Consensus 620 l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~--------- 690 (1093)
...++++++..++++|.+|+|+|+|+++..++||++++++|+++. +++||++.+.+...+..........
T Consensus 88 ~~~~l~a~~~~i~v~~~~G~i~yvs~~~~~~lGy~~~el~g~~~~-~~ihp~D~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (361)
T 4f3l_A 88 TQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIF-NFIPEGEHSEVYKILSTHLLESDSLTPEYLKSKN 166 (361)
T ss_dssp HHHHHHHTTEEEEEEETTSBEEEECTTHHHHHCCCHHHHTTSBGG-GGSCGGGHHHHHHHHHHCCCCCCSSSCGGGCGGG
T ss_pred HHHHHHhcCceEEEEcCCccEEEEechhhhhcCCCHHHhcCCcHH-HhcCHHHHHHHHHHhccCCCCCCCCCcccccccC
Confidence 355789999999999999999999999999999999999999999 9999999999988876643221111
Q ss_pred eEEEEEEEeeec----cCCcEEEEEEEEEEee---------------------cCCCCEEEEEEEEEecchhHHHHHHHH
Q 001353 691 NVELKLRKFELQ----KQHSVVYILVNACTSR---------------------DYKNNVKGVCFVGQDITHEKVLMDKFI 745 (1093)
Q Consensus 691 ~~e~~l~~~~~~----kdG~~~~v~v~~~pi~---------------------d~~g~v~gv~~v~~DITerK~aEe~L~ 745 (1093)
...+..+..... ......++.+.+.... +..+...+++++.++++.+...+...
T Consensus 167 ~~~f~cr~~~~~~~~~~~~~y~~i~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lvai~r~~~~~~~~e~~~- 245 (361)
T 4f3l_A 167 QLEFCCHMLRGTIDPKEPSTYEYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKEMCT- 245 (361)
T ss_dssp EEEEEEEEECCCSCSSSCCCEEEEEEEEEEEECC------------------------CEEEEEEEEESSCCSSEEECS-
T ss_pred ceeEEEEEeccCCCCCCCCceEEEEEEEEEEeccCCCcccccCcccccccccCccCCCceEEEEEEecCCCCccccccc-
Confidence 112222211100 1233444443333221 12233456777888887764332110
Q ss_pred HHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc----------------------ccCCCccce
Q 001353 746 RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------------------ITGQGTENF 803 (1093)
Q Consensus 746 ~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG----------------------~~~~~~~~~ 803 (1093)
++... ...++..|.+|+++++|+++..++||+++|++| ...+.....
T Consensus 246 ---------i~~~~--~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~ 314 (361)
T 4f3l_A 246 ---------VEEPN--EEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSC 314 (361)
T ss_dssp ---------CSSSC--CEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECC
T ss_pred ---------ccCCc--ceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceE
Confidence 00001 125777899999999999999999999999999 223344667
Q ss_pred eeEEEccCCcEEEEEEEEeEeecC-CCcEEEEEEEEeecccCcHH
Q 001353 804 PFGFFNRQGQFVEVALTASRRTDA-EGKVIGCFCFMQILVPDLQP 847 (1093)
Q Consensus 804 e~~~~~kdG~~~~v~~~~~~i~d~-~G~v~g~i~~~~DITe~k~~ 847 (1093)
++++++++|.++|+..++.+++|. +|++.+++|+.+|||++..+
T Consensus 315 eyR~~~kdG~~vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~ 359 (361)
T 4f3l_A 315 YYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVR 359 (361)
T ss_dssp CEEEECTTSEEEEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHH
T ss_pred EEEEEecCCCEEEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhh
Confidence 899999999999999999999998 89999999999999986544
No 36
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.62 E-value=3.1e-15 Score=173.48 Aligned_cols=212 Identities=11% Similarity=0.107 Sum_probs=148.3
Q ss_pred HHHHHhcCccEEEECCC-CcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHH----------cC---
Q 001353 621 VRLIETATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL----------LG--- 686 (1093)
Q Consensus 621 ~~lie~~~~~I~~~D~d-G~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l----------~g--- 686 (1093)
..++++++..+++++.+ |+|+|+|++++.++||+++|++|+++. +++||++.+.+.+.+.... ..
T Consensus 89 ~~ll~~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~-~~ihp~D~~~~~~~L~~~~~~p~~~~~~~~tg~~ 167 (387)
T 4f3l_B 89 HLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLF-DYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLP 167 (387)
T ss_dssp HHHHHTCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCGGGHHHHHHHHSCC----------------
T ss_pred HHHHhcCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHH-HhcCCCCHHHHHHHhcccccCccccccCcccCCc
Confidence 45788899999999987 999999999999999999999999999 9999999998887663221 00
Q ss_pred --------------CCCceEEEEEEEeeec-----------------cCCcEEEEEEEEEEeec---------------C
Q 001353 687 --------------EEDKNVELKLRKFELQ-----------------KQHSVVYILVNACTSRD---------------Y 720 (1093)
Q Consensus 687 --------------~~~~~~e~~l~~~~~~-----------------kdG~~~~v~v~~~pi~d---------------~ 720 (1093)
+..+.+.++++..... +..+..++.+++..... .
T Consensus 168 ~~~e~~~~~~~~~~g~~rsF~cRmr~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~G~l~~~~~~~~~~~~~~~~~~~ 247 (387)
T 4f3l_B 168 VKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNE 247 (387)
T ss_dssp ----------CCCGGGEEEEEEEEECSCC-------------------CCSEEEEEEEEEEEC-----------------
T ss_pred cCCCCCCcccccccCCceeEEEeeecccCCcccccccccccccccccCCCceEEEEEEEEEecccccccccccccccccC
Confidence 1112233333221100 23445555555443221 1
Q ss_pred CCCEEEEEEEEEecchhHHH--HHHHHHHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc----
Q 001353 721 KNNVKGVCFVGQDITHEKVL--MDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---- 794 (1093)
Q Consensus 721 ~g~v~gv~~v~~DITerK~a--Ee~L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG---- 794 (1093)
.++..++++++++++..... ..+ +..+... .++..|.+|+++++|+++..++||+++|++|
T Consensus 248 ~~~~~~lvai~r~~~~~~~~~~~~e----------i~~~~~~---fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~ 314 (387)
T 4f3l_B 248 GCNLSCLVAIGRLHSHMVPQPANGE----------IRVKSME---YVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCY 314 (387)
T ss_dssp --CCCEEEEEEEECCCSCCSCCCSS----------SCBCCCE---EEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGG
T ss_pred CCcceEEEEEEecccCCCCCCcccc----------cccCCce---EEEEECCCCEEEEECCCcccccCCCHHHHcCCcHH
Confidence 12344677888886532110 000 0011122 5778899999999999999999999999999
Q ss_pred ------------------c-cCCCccceeeEEEccCCcEEEEEEEEeEeecC-CCcEEEEEEEEeecccCcH
Q 001353 795 ------------------I-TGQGTENFPFGFFNRQGQFVEVALTASRRTDA-EGKVIGCFCFMQILVPDLQ 846 (1093)
Q Consensus 795 ------------------~-~~~~~~~~e~~~~~kdG~~~~v~~~~~~i~d~-~G~v~g~i~~~~DITe~k~ 846 (1093)
. .+......+++++++||.++|+..+..+++|. +|++.+++|+.+|||++++
T Consensus 315 ~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 315 EYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp GTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred HeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 2 23344567999999999999999999999997 8999999999999999864
No 37
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.59 E-value=1.5e-14 Score=144.40 Aligned_cols=139 Identities=17% Similarity=0.174 Sum_probs=112.5
Q ss_pred HHHHHHHHHhcCccEEEEC-CCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceE-EE
Q 001353 617 ACEMVRLIETATAPIFGVD-SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV-EL 694 (1093)
Q Consensus 617 ~~~l~~lie~~~~~I~~~D-~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~-e~ 694 (1093)
.++|+.+++++|++++++| .+|+|+++|+++++++|++ +++|+++. +++++.....+...+..++..+.+... +.
T Consensus 16 ~~~~~~~~~~~~~~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (158)
T 3k3c_A 16 AEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAR-EVYPELEGQQIYEMLDRVYQTGEPQSGSEW 92 (158)
T ss_dssp HHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHH-HHSGGGGGTTHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhcCCceEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHH-HhCCchhHHHHHHHHHHHHHhCCcccccce
Confidence 4678999999999999999 9999999999999999999 89999998 888887776677778888755554322 23
Q ss_pred EEEEeeeccC-CcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHHhcC
Q 001353 695 KLRKFELQKQ-HSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVN 759 (1093)
Q Consensus 695 ~l~~~~~~kd-G~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se~~lr~i~~~~~ 759 (1093)
.+... ...+ |..+|+.++..|+++.+|.+.|++++++|||++|++|++|+++...++..+.++.
T Consensus 93 ~~~~~-~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~~~~~l~~~v~~~~ 157 (158)
T 3k3c_A 93 RLQTD-YDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVR 157 (158)
T ss_dssp EEEEE-SSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHC-----
T ss_pred eEEec-cCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 22211 1123 6789999999999999999999999999999999999999999999988877754
No 38
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.58 E-value=1.3e-14 Score=140.70 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=100.9
Q ss_pred HHHHHhcCccEEEECCCC---cEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEE
Q 001353 621 VRLIETATAPIFGVDSSG---TINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLR 697 (1093)
Q Consensus 621 ~~lie~~~~~I~~~D~dG---~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~ 697 (1093)
+.++++++++|+++|.+| +|+++|+++++++||+.++++|+++. .+.+++........+...+..+.....++.
T Consensus 2 ~~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~-- 78 (132)
T 2pr5_A 2 SHMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCR-FLQGKHTDPAEVDNIRTALQNKEPVTVQIQ-- 78 (132)
T ss_dssp ----CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHHTCCEEEEEE--
T ss_pred hhHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChh-hhCCCCCCHHHHHHHHHHHHcCCCeEEEEE--
Confidence 357899999999999977 99999999999999999999999987 666665544444445555544444333333
Q ss_pred EeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHH
Q 001353 698 KFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAI 754 (1093)
Q Consensus 698 ~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se~~lr~i 754 (1093)
..++||+.+|+.++..|+++.+ +.+++++++|||++|++|++|++++++++.+
T Consensus 79 --~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~~l~~l 131 (132)
T 2pr5_A 79 --NYKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLTEITAL 131 (132)
T ss_dssp --EECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred --EEecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHHHHHhc
Confidence 3578999999999999999865 8899999999999999999999999988754
No 39
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.58 E-value=1.7e-14 Score=137.30 Aligned_cols=117 Identities=14% Similarity=0.043 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEE
Q 001353 617 ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKL 696 (1093)
Q Consensus 617 ~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l 696 (1093)
+++|+.++++++++|+++|.+|+|+++|+++++++||+.++++|+++. .+.+++........+...+..+.....++.
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~- 81 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNES-ILSNGTTPRLVYQALWGRLAQKKPWSGVLV- 81 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEE-
T ss_pred HHHHHHHHHhCCCeEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHH-HcCCCCCCHHHHHHHHHHHHcCCCEEEEEE-
Confidence 357889999999999999999999999999999999999999999988 777766554444444455555544333333
Q ss_pred EEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhH
Q 001353 697 RKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738 (1093)
Q Consensus 697 ~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK 738 (1093)
..+++|+.+|+.++..|++|.+|.+.+++++++|||++|
T Consensus 82 ---~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 82 ---NRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp ---EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred ---EEcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 357899999999999999999999999999999999976
No 40
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.57 E-value=7.4e-15 Score=145.91 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=86.0
Q ss_pred ecHHHHHHHHHHHHHHHHHcCCCC--CCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-CC--
Q 001353 973 GDRIRLQLVLSDFLHCVVRHAPSP--DGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-WT-- 1047 (1093)
Q Consensus 973 ~D~~~L~qVl~nLl~NAik~t~~~--~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~~-- 1047 (1093)
.|...+.+++.||+.||++|+... ++.|.|++...++ .+.|+|.|+|+||+ .++++|++|++ +.
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~---------~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~~ 103 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDG---------VVHLTVRDEGVGIP--DIEEARQPLFTTKPEL 103 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETT---------EEEEEEEECSSCCS--CHHHHTCCC-------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCC---------EEEEEEEECCCCcC--hHHHhhcccccCCCCC
Confidence 478889999999999999998652 4899999988877 89999999999999 88999999988 33
Q ss_pred CCccchHHHHHHHHHHcCCEEEEEeeCC-eeEEEEEEeecCCcc
Q 001353 1048 TPEGLGLKLSRKLLIMMNGRVRYVRENS-KCYFVIDLELKTRGR 1090 (1093)
Q Consensus 1048 ~GtGLGL~ivr~ive~hgG~I~v~S~~g-gt~F~v~LPlp~~~~ 1090 (1093)
.|+|+||++|+++++ +++++|.++ ||+|+++||+..+++
T Consensus 104 ~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~v~~~lp~~~~~~ 143 (145)
T 1th8_A 104 ERSGMGFTIMENFMD----EVIVESEVNKGTTVYLKKHGIHHHH 143 (145)
T ss_dssp CCCSCHHHHHHHHSS----EEEEEEETTTEEEEEEEECCC----
T ss_pred CCCcchHHHHHHHHh----eEEEEeCCCCCEEEEEEEecccccc
Confidence 689999999999988 999999876 599999999866553
No 41
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.56 E-value=5.9e-15 Score=161.11 Aligned_cols=173 Identities=13% Similarity=0.062 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHhcCccEEEECC---CCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcC
Q 001353 610 VDELSSVACEMVRLIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686 (1093)
Q Consensus 610 ~~eL~~~~~~l~~lie~~~~~I~~~D~---dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g 686 (1093)
.+++++.+++|+.+++++|++|+++|. +|+|++||+++++++||++++++|+++. .++++++.......+...+..
T Consensus 55 ~~~l~~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~l~~ 133 (258)
T 3p7n_A 55 RVEVQPPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCR-FLAGSGTEPWLTDKIRQGVRE 133 (258)
T ss_dssp ------CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGG-GGCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChh-hccCCCCchhHHHHHHHHHHc
Confidence 355777778899999999999999999 9999999999999999999999999987 888887777777777776666
Q ss_pred CCCceEEEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchh--HHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 001353 687 EEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE--KVLMDKFIRLQGDYEAIIQSVNPLIPP 764 (1093)
Q Consensus 687 ~~~~~~e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITer--K~aEe~L~~se~~lr~i~~~~~~li~~ 764 (1093)
+.....++.+ .+++|..+|+.++..|++|.+|.+.+++++++|||++ ++.+.++.+.+..+..+.+....
T Consensus 134 ~~~~~~e~~~----~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITerk~~~~e~~~~~~~~~l~~L~~r~~~---- 205 (258)
T 3p7n_A 134 HKPVLVEILN----YKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQPNMGMARRERAAEMLKTLSPRQLE---- 205 (258)
T ss_dssp TCCEEEEEEE----ECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC-------CHHHHHHHHHHHTTSCHHHHH----
T ss_pred CCCeEEEEEE----EcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchhhhhhhHHHHHHHHHHHhhcCHHHHH----
Confidence 6554444433 5789999999999999999999999999999999999 66666655555444322221111
Q ss_pred eEEecCCCcEeechhhhHHHhCCCcchhcc
Q 001353 765 IFASDENACCSEWNAAMEKVTGWMRHEVIG 794 (1093)
Q Consensus 765 I~~~D~~g~i~~~N~a~~~l~G~~~eEliG 794 (1093)
++.....| ..|..+++.+|++...+..
T Consensus 206 i~~~~~~g---~~~~eia~~l~~s~~tv~~ 232 (258)
T 3p7n_A 206 VTTLVASG---LRNKEVAARLGLSEKTVKM 232 (258)
T ss_dssp HHHHHHTT---CCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHcC---CCHHHHHHHHCcCHHHHHH
Confidence 00001122 3789999999999887654
No 42
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.55 E-value=6.1e-15 Score=150.19 Aligned_cols=139 Identities=9% Similarity=-0.008 Sum_probs=114.7
Q ss_pred HHHHHHHHHhcCccEEEECCC---CcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEE
Q 001353 617 ACEMVRLIETATAPIFGVDSS---GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVE 693 (1093)
Q Consensus 617 ~~~l~~lie~~~~~I~~~D~d---G~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e 693 (1093)
.++|+.++++++++|+++|.+ |+|+++|+++++++||+.++++|+++. .++++++.......+...+..+.....+
T Consensus 6 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e 84 (176)
T 4hia_A 6 FEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCR-FLQRGDENAQARADIRDALKLGRELQVV 84 (176)
T ss_dssp HHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcc-eeeCCCCCHHHHHHHHHHHHcCCceEEE
Confidence 356889999999999999999 999999999999999999999999988 7888877777777777777666554444
Q ss_pred EEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHH-HHHHHHhcCC
Q 001353 694 LKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGD-YEAIIQSVNP 760 (1093)
Q Consensus 694 ~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se~~-lr~i~~~~~~ 760 (1093)
+.. .+++|..+|+.++..|++|.+|.+.+++++++|||++|++|+++.....+ +..+.+....
T Consensus 85 ~~~----~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~~~~a~~d~LtgL~NR~~~ 148 (176)
T 4hia_A 85 LRN----YRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEAAAAGHAGALTGELARIGT 148 (176)
T ss_dssp EEE----ECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred EEE----EcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHHHHHhhhhHHhhhhhhhhh
Confidence 433 46899999999999999999999999999999999999999984443333 4555555443
No 43
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.55 E-value=1.2e-14 Score=170.91 Aligned_cols=108 Identities=12% Similarity=0.157 Sum_probs=95.2
Q ss_pred EEecHHHHHHHHHHHHHHHHHcCCCCCC---eEEEEEEeCC---ccccCCCceeEEEEEEecCCCCCChhhHhhhccCCC
Q 001353 971 LNGDRIRLQLVLSDFLHCVVRHAPSPDG---WVEIKVLPGL---KLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRN 1044 (1093)
Q Consensus 971 v~~D~~~L~qVl~nLl~NAik~t~~~~g---~I~I~v~~~~---~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~ 1044 (1093)
+.+|+.+|.|||.||+.||++|++. ++ .|.|++...+ + .+.|+|.|||+|||++.++++|++|+
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~-gg~~p~I~I~i~~~~~~~~---------~~~I~V~DnG~GI~~e~l~~iF~~f~ 95 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDV-HGILPNIKITIDLIDDARQ---------IYKVNVVDNGIGIPPQEVPNAFGRVL 95 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGG-GTCCCEEEEEEEEEETTTT---------EEEEEEECCSCCCCGGGHHHHHHCCC
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhc-CCCceEEEEEEEECCCcCc---------EEEEEEEECCCCCCHHHHHHHhcccc
Confidence 4567899999999999999999987 56 8998887654 4 79999999999999999999999996
Q ss_pred C--------CCCCccchHHHHHHHHHHcCCE-EEEEeeCCe-e-EEEEEEeecCC
Q 001353 1045 Q--------WTTPEGLGLKLSRKLLIMMNGR-VRYVRENSK-C-YFVIDLELKTR 1088 (1093)
Q Consensus 1045 ~--------~~~GtGLGL~ivr~ive~hgG~-I~v~S~~gg-t-~F~v~LPlp~~ 1088 (1093)
+ ..+|+||||++|+.+++.|||+ |++.|.+++ + +|+++||+|..
T Consensus 96 ~tsk~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~ 150 (471)
T 1mu5_A 96 YSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDIN 150 (471)
T ss_dssp CC-CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTT
T ss_pred cccccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEecccc
Confidence 4 2358999999999999999999 999998875 4 89999999864
No 44
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.54 E-value=2.6e-14 Score=136.04 Aligned_cols=115 Identities=12% Similarity=0.168 Sum_probs=98.0
Q ss_pred HHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHc-CCCCceEEEEEEE
Q 001353 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL-GEEDKNVELKLRK 698 (1093)
Q Consensus 620 l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~-g~~~~~~e~~l~~ 698 (1093)
+..+++++++.|+.+|.+|+|+++|+++++++||++++++|+++. +++||++.+.+...+..++. ++.....++++
T Consensus 4 ~~ll~e~~~d~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~-~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~-- 80 (121)
T 3f1p_B 4 KGLNVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIV-EFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRF-- 80 (121)
T ss_dssp ----CCCCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGG-GGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEE--
T ss_pred ccceecCCCceEEEECCCceEEEECcchhhhhCCChHHHcCCCHH-HeECHHHHHHHHHHHHHHHhcCCCcccEEEEE--
Confidence 346889999999999999999999999999999999999999998 99999999999998888874 34444455544
Q ss_pred eeeccCCcEEEEEEEEEEeecC-CCCEEEEEEEEEecchhHH
Q 001353 699 FELQKQHSVVYILVNACTSRDY-KNNVKGVCFVGQDITHEKV 739 (1093)
Q Consensus 699 ~~~~kdG~~~~v~v~~~pi~d~-~g~v~gv~~v~~DITerK~ 739 (1093)
.+++|+.+|+.++..|++|. +|.+.+++++.+|||++|+
T Consensus 81 --~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 81 --RSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp --ECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred --EecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 57899999999999999987 7899999999999999986
No 45
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.53 E-value=1.4e-14 Score=172.11 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=95.0
Q ss_pred eEEEec-HHHHHHHHHHHHHHHHHcCCCCCC---eEEEEEEeCC---ccccCCCceeEEEEEEecCCCCCChhhHhhhcc
Q 001353 969 LSLNGD-RIRLQLVLSDFLHCVVRHAPSPDG---WVEIKVLPGL---KLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYN 1041 (1093)
Q Consensus 969 ~~v~~D-~~~L~qVl~nLl~NAik~t~~~~g---~I~I~v~~~~---~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe 1041 (1093)
+.+..+ +.+|.|||.||+.||++|++. +| .|.|++...+ + .+.|+|.|||+|||++.++++|+
T Consensus 22 l~i~~~d~~~L~qvl~NLV~NAida~~~-gg~~p~I~I~i~~~~~~~~---------~~~I~V~DnG~GI~~e~l~~iF~ 91 (530)
T 2zbk_B 22 LAGFPNPARALYQTVRELIENSLDATDV-HGILPNIKITIDLIDDARQ---------IYKVNVVDNGIGIPPQEVPNAFG 91 (530)
T ss_dssp GGTCSSHHHHHHHHHHHHHHHHHTTTTT-TTCCCCCEEEEEEEETTTT---------EEEEEEECCSCCCCGGGSHHHHT
T ss_pred ceEEcCcHHHHHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEECCCcCc---------eEEEEEEECCCCCCHHHHHHHhc
Confidence 344455 599999999999999999987 66 8888887654 4 88999999999999999999999
Q ss_pred CCCC--------CCCCccchHHHHHHHHHHcCCE-EEEEeeCCe-e-EEEEEEeecCC
Q 001353 1042 GRNQ--------WTTPEGLGLKLSRKLLIMMNGR-VRYVRENSK-C-YFVIDLELKTR 1088 (1093)
Q Consensus 1042 ~F~~--------~~~GtGLGL~ivr~ive~hgG~-I~v~S~~gg-t-~F~v~LPlp~~ 1088 (1093)
+|++ ..+|+||||++|+.+++.|||+ |++.|.+++ + +|++.||+|..
T Consensus 92 ~f~~tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~ 149 (530)
T 2zbk_B 92 RVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDIN 149 (530)
T ss_dssp SCCCSCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccccCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEeccc
Confidence 9954 2368999999999999999999 999998864 4 89999999864
No 46
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.52 E-value=2.5e-14 Score=143.27 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEECC---CCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCC
Q 001353 611 DELSSVACEMVRLIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687 (1093)
Q Consensus 611 ~eL~~~~~~l~~lie~~~~~I~~~D~---dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~ 687 (1093)
++++....++..++++++++++++|. +|+|+++|+++++++|++.++++|+++. .+++++........+...+..+
T Consensus 28 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~-~l~~~~~~~~~~~~~~~~~~~~ 106 (166)
T 3ue6_A 28 RILEDPDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCR-FLQGPETDPRAVDKIRNAITKG 106 (166)
T ss_dssp ---CCCCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHh-heeCCCCCHHHHHHHHHHHhcC
Confidence 44555567889999999999999999 7999999999999999999999999987 7888777666666666666655
Q ss_pred CCceEEEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHH
Q 001353 688 EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDK 743 (1093)
Q Consensus 688 ~~~~~e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~ 743 (1093)
.....++.+ .+++|..+|+.++..|++|.+|.+.|++++++|||++|+++..
T Consensus 107 ~~~~~e~~~----~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~ 158 (166)
T 3ue6_A 107 VDTSVCLLN----YRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLV 158 (166)
T ss_dssp CCEEEEEEE----ECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHH
T ss_pred CceEEEEEE----EcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHH
Confidence 554444433 4689999999999999999999999999999999999998766
No 47
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.52 E-value=2.4e-14 Score=148.03 Aligned_cols=141 Identities=18% Similarity=0.209 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhcCccEEEEC-CCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceE-
Q 001353 615 SVACEMVRLIETATAPIFGVD-SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV- 692 (1093)
Q Consensus 615 ~~~~~l~~lie~~~~~I~~~D-~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~- 692 (1093)
..+++|+.+++++|++++++| .+|+|+++|+++++++|++ +++|+++. +++++.....+...+..++..+.....
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 110 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAR-EVYPELEGQQIYEMLDRVYQTGEPQSGS 110 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHH-HHCTTSCSSSSHHHHHHHHHHCCCEEEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHH-HHCCchhhhhHHHHHHHHHHcCCccccc
Confidence 344678999999999999999 9999999999999999999 89999998 888876665566677777754444322
Q ss_pred EEEEEEeeecc-C-CcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHH----HHHHHHHHHHHHHhcCC
Q 001353 693 ELKLRKFELQK-Q-HSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDK----FIRLQGDYEAIIQSVNP 760 (1093)
Q Consensus 693 e~~l~~~~~~k-d-G~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~----L~~se~~lr~i~~~~~~ 760 (1093)
++.+.. .++ + |..+|+.++..|++|.+|.+.|++++++|||++|++|++ |++++.+++.++++++.
T Consensus 111 ~~~~~~--~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~~~~ll~~~~~~l~~~~~~~~~ 182 (185)
T 3kx0_X 111 EWRLQT--DYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATV 182 (185)
T ss_dssp EEEEC----------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC----------------------
T ss_pred ceeEEe--eccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 222221 122 2 678999999999999999999999999999999999999 99999999999988764
No 48
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.51 E-value=7.2e-14 Score=131.83 Aligned_cols=122 Identities=16% Similarity=0.173 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCC--CCccccccccccHHHHHHHHHHHHcCCCCc
Q 001353 613 LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMG--KSLIDEVVHEESQGAVENLICRALLGEEDK 690 (1093)
Q Consensus 613 L~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG--~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~ 690 (1093)
|+.++++|+.+++++++++|.+|.+|+++++|+++++++|++.++++| ..+. .+++|++.+.+...+..++.++...
T Consensus 2 l~~~~~~l~~~~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYF-QRVHPDDRARVRRELDRHVLGDRPF 80 (125)
T ss_dssp ---------------CCEEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHH-HHBCTTTHHHHHHHHHHHHHSCCCE
T ss_pred cHHHHHHHHHHHHhCCeeEEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHH-hhcChhHHHHHHHHHHHHHhcCCCc
Confidence 456678899999999999999999999999999999999999999999 5566 7889999999999998888887765
Q ss_pred eEEEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHH
Q 001353 691 NVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKV 739 (1093)
Q Consensus 691 ~~e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~ 739 (1093)
..++++ .+++|..+|+.+...|+++.+|.+.+++++++|||++|+
T Consensus 81 ~~e~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 81 DVEYRI----VRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEE----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred eEEEEE----ECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 555554 467999999999999999999999999999999999985
No 49
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.49 E-value=1.1e-13 Score=131.98 Aligned_cols=123 Identities=16% Similarity=0.140 Sum_probs=97.0
Q ss_pred HHHhcCccEEEECC---CCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEe
Q 001353 623 LIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKF 699 (1093)
Q Consensus 623 lie~~~~~I~~~D~---dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~ 699 (1093)
++++++++++++|. +|+|+++|+++++++|++.++++|+++. .+++++........+...+..+.....++.+
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--- 77 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCR-FLQGHGTDPAHVRAIKSAIAAEKPIDIDIIN--- 77 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE---
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHh-hhcCCccCHHHHHHHHHHHHcCCCceeEEEE---
Confidence 46789999999999 9999999999999999999999999988 7887777666666676777666554444443
Q ss_pred eeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHH
Q 001353 700 ELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGD 750 (1093)
Q Consensus 700 ~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se~~ 750 (1093)
.+++|..+|+.++..|+.+.+|.+.|++++++|||++|++|++....+.+
T Consensus 78 -~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~~~~~~~ 127 (128)
T 3t50_A 78 -YKKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSLEHHHHH 127 (128)
T ss_dssp -ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-----------
T ss_pred -EcCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhhhhcccC
Confidence 46799999999999999999999999999999999999999998777654
No 50
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.48 E-value=1.1e-13 Score=138.50 Aligned_cols=129 Identities=14% Similarity=0.159 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCc
Q 001353 611 DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDK 690 (1093)
Q Consensus 611 ~eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~ 690 (1093)
+++++.+..+..+++++++||+++|.+|+|++||+++++++|++.++++|+++. +++++ ..+.+...+..++..+.+.
T Consensus 15 ~~~~~~~~~l~~il~~~~~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~-~~~p~-~~~~~~~~l~~vl~~G~~~ 92 (152)
T 3mxq_A 15 NAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNIL-ELFPE-SADYLKRKIDTALVIESSS 92 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHH-HHSGG-GHHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHH-HhcCC-hHHHHHHHHHHHHhcCCce
Confidence 467888888999999999999999999999999999999999999999999999 88888 7788888889988876652
Q ss_pred eEEEE-------EEEe-eeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHH
Q 001353 691 NVELK-------LRKF-ELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLM 741 (1093)
Q Consensus 691 ~~e~~-------l~~~-~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aE 741 (1093)
...+. +... ...++|...|+.++..|++|.+|++.|++.+++|||+++++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a~ 151 (152)
T 3mxq_A 93 FSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
T ss_dssp EEECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC----
T ss_pred eeecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhcc
Confidence 22111 1110 122456788999999999999999999999999999998754
No 51
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.46 E-value=1.8e-13 Score=132.08 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=97.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcC
Q 001353 607 MQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG 686 (1093)
Q Consensus 607 ~q~~~eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g 686 (1093)
++.+++|++.+++|+.++++++++|+++|.+|+|++||++++++|||+.+|++|+++. .++++++.......+......
T Consensus 5 ~~~e~~l~~~~~~~~~l~~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~-~l~~~~~~~~~~~~~~~~~~~ 83 (130)
T 1d06_A 5 LETEDVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLR-ILMPEPYRHEHDGYLQRYMAT 83 (130)
T ss_dssp HHHHHHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-GGSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCcCeEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHH-HHCCchhHHHHHHHHHHHHhc
Confidence 4556788888889999999999999999999999999999999999999999999998 788877666555555554433
Q ss_pred CCC----ceEEEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 001353 687 EED----KNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (1093)
Q Consensus 687 ~~~----~~~e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DIT 735 (1093)
+.. ...++. ..++||+.+|+.++..|+.+. ...+++++++|||
T Consensus 84 ~~~~~~~~~~e~~----~~~kdG~~~~~~~~~~~~~~~--~~~~~~~~~~DIT 130 (130)
T 1d06_A 84 GEKRIIGIDRVVS----GQRKDGSTFPMKLAVGEMRSG--GERFFTGFIRDLT 130 (130)
T ss_dssp CCCSSTTSCEEEE----EECTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC
T ss_pred CCccccCCeeEEE----EEeCCCCEEEEEEEEEEEEEC--CeEEEEEEEEECc
Confidence 322 122332 357899999999999999863 3456888999998
No 52
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.45 E-value=1.3e-13 Score=130.02 Aligned_cols=109 Identities=11% Similarity=0.092 Sum_probs=97.1
Q ss_pred hcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccCC
Q 001353 626 TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705 (1093)
Q Consensus 626 ~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG 705 (1093)
++++.|+.+|.+|+++++|+++++++||++++++|+++. +++||++.+.+...+..++.++.....++++ .+++|
T Consensus 7 ~~~~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~-~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~----~~~dG 81 (117)
T 3f1p_A 7 DSKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAY-EFYHALDSENMTKSHQNLCTKGQVVSGQYRM----LAKHG 81 (117)
T ss_dssp GGGEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGG-GGBCGGGHHHHHHHHHHHHHHSEEECCCEEE----ECTTS
T ss_pred CCccEEEEECCCceEEEECcChhhhhCCCHHHHcCCchh-heECHHHHHHHHHHHHHHHhCCCeeeeEEEE----EecCC
Confidence 357889999999999999999999999999999999998 9999999999998888888766554455554 47899
Q ss_pred cEEEEEEEEEEeecC-CCCEEEEEEEEEecchhHH
Q 001353 706 SVVYILVNACTSRDY-KNNVKGVCFVGQDITHEKV 739 (1093)
Q Consensus 706 ~~~~v~v~~~pi~d~-~g~v~gv~~v~~DITerK~ 739 (1093)
+.+|+.++..|++|. +|.+.+++++.+|||++|+
T Consensus 82 ~~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 82 GYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp SEEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred CEEEEEEeeEEEECCCCCCceEEEEEeeecccccc
Confidence 999999999999998 8899999999999999885
No 53
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.44 E-value=4.3e-13 Score=146.21 Aligned_cols=170 Identities=9% Similarity=0.022 Sum_probs=102.7
Q ss_pred EeecCCCCEEEEEEEEE------ecchhHHHHHHHHHHHHHHHHHHHhcCCCCCceEEecC---CCcEeechhhhHHHhC
Q 001353 716 TSRDYKNNVKGVCFVGQ------DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDE---NACCSEWNAAMEKVTG 786 (1093)
Q Consensus 716 pi~d~~g~v~gv~~v~~------DITerK~aEe~L~~se~~lr~i~~~~~~li~~I~~~D~---~g~i~~~N~a~~~l~G 786 (1093)
+++|.+++...+..... .+.....++++++++++.|+.+++++++ +||++|. +|+|++||+++++++|
T Consensus 24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~---~i~~~d~~~~~g~i~~~N~a~~~l~G 100 (258)
T 3p7n_A 24 DLYDDDDKDHPFTMGQDRPIDGSGAPGADDTRVEVQPPAQWVLDLIEASPI---ASVVSDPRLADNPLIAINQAFTDLTG 100 (258)
T ss_dssp -------------------------------------CCHHHHHHHHTCSS---EEEEECTTSTTCCEEEECHHHHHHHC
T ss_pred CccccCCCcCceeccCCCCCCcccCCcchhhHHHHHhHHHHHHHHHhcCCc---cEEEEcCCCCCCcEEEEhHHHHHHcC
Confidence 44555554444333333 3334445566788999999999999998 8999999 8999999999999999
Q ss_pred CCcchhcc----------------------ccCCCccceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccC
Q 001353 787 WMRHEVIG----------------------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPD 844 (1093)
Q Consensus 787 ~~~eEliG----------------------~~~~~~~~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~ 844 (1093)
|+++|++| .........++.+.++||+.+|+.++..|+.|.+|.+.+++++++|||++
T Consensus 101 ~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITer 180 (258)
T 3p7n_A 101 YSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDD 180 (258)
T ss_dssp CCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC---
T ss_pred CCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEEEEEEcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchh
Confidence 99999999 12233455678889999999999999999999999999999999999999
Q ss_pred c--HHHHHHHhHHHHHH---HHHHH---------HHHHHHHhhhhHHHHHHHHHHHHh
Q 001353 845 L--QPALEAQGLEDMDI---YAKIK---------ELAYIRQEVKNPLNGIRFVHKLLE 888 (1093)
Q Consensus 845 k--~~e~elq~~~e~~~---~~k~~---------~la~isHELrnPLt~I~g~~~LL~ 888 (1093)
+ +.+.+.++..+... ....+ ....++|++..++..+...+..+.
T Consensus 181 k~~~~e~~~~~~~~~l~~L~~r~~~i~~~~~~g~~~~eia~~l~~s~~tv~~~l~~i~ 238 (258)
T 3p7n_A 181 QPNMGMARRERAAEMLKTLSPRQLEVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVM 238 (258)
T ss_dssp ----CHHHHHHHHHHHTTSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhcCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4 33333222211111 01111 134567777777777776555443
No 54
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.44 E-value=2.8e-13 Score=128.50 Aligned_cols=114 Identities=12% Similarity=0.131 Sum_probs=80.2
Q ss_pred hcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCC----ceEEEEEEEeee
Q 001353 626 TATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED----KNVELKLRKFEL 701 (1093)
Q Consensus 626 ~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~----~~~e~~l~~~~~ 701 (1093)
+++++|+++|.+|+|++||++++++|||++++++|+++. .++++.+.......+......+.. ...++. ..
T Consensus 1 ~~~d~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 75 (119)
T 2vv6_A 1 TIPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVN-ILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVT----GK 75 (119)
T ss_dssp -CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-GGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEE----EE
T ss_pred CCcceEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHH-HhCCchHHHHHHHHHHHHhcCCCcccCCCceEEE----EE
Confidence 468999999999999999999999999999999999988 787777665555555554433322 122333 35
Q ss_pred ccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHH
Q 001353 702 QKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIR 746 (1093)
Q Consensus 702 ~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~ 746 (1093)
++||+.+|+.++..|+.+. ...+++++++|||++|++|++|+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~--~~~~~~~~~~DITerk~~e~~l~~ 118 (119)
T 2vv6_A 76 RRDGTTFPMHLSIGEMQSG--GEPYFTGFVRDLTEHQQTQARLQE 118 (119)
T ss_dssp CTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC-----------
T ss_pred eCCCCEEEEEEEEEEEEEC--CeEEEEEEEEEcHHHHHHHHHHHh
Confidence 7899999999999999864 345688999999999999998754
No 55
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.43 E-value=5.9e-13 Score=132.77 Aligned_cols=131 Identities=12% Similarity=0.093 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCccEEEECCCC---cEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEE
Q 001353 618 CEMVRLIETATAPIFGVDSSG---TINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVEL 694 (1093)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dG---~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~ 694 (1093)
+.++.++++++++++++|.+| +|+++|+++++++|++.++++|+++. .++++.........+...+..+.....++
T Consensus 25 ~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (162)
T 3sw1_A 25 QLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCR-FLQGDDRDQLGRARIRKAMAEGRPCREVL 103 (162)
T ss_dssp HHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGG-GGTTTCCCCHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcc-eecCCCcCHHHHHHHHHHHhcCCCCcceE
Confidence 567889999999999999999 99999999999999999999999997 78777666666666666665555544444
Q ss_pred EEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHH
Q 001353 695 KLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEA 753 (1093)
Q Consensus 695 ~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se~~lr~ 753 (1093)
.+ .+++|..+|+.++..|+.+.+|.+.|++++++|||++|+++++|+++++.++.
T Consensus 104 ~~----~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~~l~~ 158 (162)
T 3sw1_A 104 RN----YRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRARPKP 158 (162)
T ss_dssp EE----ECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC----
T ss_pred EE----ECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 33 46789999999999999999999999999999999999999999988776653
No 56
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.42 E-value=5.4e-13 Score=125.53 Aligned_cols=112 Identities=17% Similarity=0.138 Sum_probs=96.0
Q ss_pred cCccEEEEC-CCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccCC
Q 001353 627 ATAPIFGVD-SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705 (1093)
Q Consensus 627 ~~~~I~~~D-~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG 705 (1093)
+++++|.+| .+|+++|+|+++++++||++++++|...+..++||++.+.+...+..++.++.....++++ .+++|
T Consensus 2 a~~giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~----~~~dG 77 (115)
T 3h9w_A 2 TKAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRA----LHRDG 77 (115)
T ss_dssp -CCEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEE----ECTTS
T ss_pred cceEEEEEEcCCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEE----EcCCC
Confidence 578999999 6799999999999999999999998433337899999999999999988887765555555 47899
Q ss_pred cEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHH
Q 001353 706 SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMD 742 (1093)
Q Consensus 706 ~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe 742 (1093)
+.+|+.+.+.|++|.+|++.+++++..|||++|.+|+
T Consensus 78 ~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 78 HYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp CEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred CEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 9999999999999999999999999999999999875
No 57
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.41 E-value=1.8e-12 Score=120.09 Aligned_cols=112 Identities=19% Similarity=0.148 Sum_probs=94.5
Q ss_pred HHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEE
Q 001353 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLR 697 (1093)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~ 697 (1093)
++|+.+++++|++++++|.+|+|+++|+++++++|++.++++|+++. +++ +++.+.+...+..++.++.....+..+
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHY-DIF-PEIGEEWKSVHRRGLAGEVIRVEEDCF- 79 (114)
T ss_dssp HHHHHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHH-HHC-TTCCHHHHHHHHHHHTTCCEEEEEEEE-
T ss_pred HHHHHHHhcCCceEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHH-HHC-CccHHHHHHHHHHHhcCCcceeeeeEE-
Confidence 56889999999999999999999999999999999999999999998 776 555666777788888765543222222
Q ss_pred EeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 001353 698 KFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (1093)
Q Consensus 698 ~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DIT 735 (1093)
.+++|..+|+.++..|++|.+|.+.|++++++|||
T Consensus 80 ---~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 80 ---VRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp ---EC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred ---EcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 46789999999999999999999999999999998
No 58
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.40 E-value=1.5e-12 Score=125.26 Aligned_cols=135 Identities=16% Similarity=0.056 Sum_probs=114.8
Q ss_pred HHHHHHhcCccEEEECC---CCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEE
Q 001353 620 MVRLIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKL 696 (1093)
Q Consensus 620 l~~lie~~~~~I~~~D~---dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l 696 (1093)
++.++++++++++++|. +|+|+++|+++++++|++.++++|+++. .++++.....+...+...+..+.....++.+
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCR-FLQGPETDRATVRKIRDAIDNQTEVTVQLIN 82 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHH-HhcCCcCChHHHHHHHHHHhcCCCcceEEEE
Confidence 35678999999999999 9999999999999999999999999998 7878877766666666666666554444443
Q ss_pred EEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHHhcCC
Q 001353 697 RKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNP 760 (1093)
Q Consensus 697 ~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se~~lr~i~~~~~~ 760 (1093)
.+++|..+|+.++..|+++.+|.+.|++++++|||++|+ ++++.+.+.+++.++++++.
T Consensus 83 ----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~-~~~~~~~~~~~~~~~~~~~~ 141 (146)
T 2v0u_A 83 ----YTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR-DAAEREGVMLIKKTAENIDE 141 (146)
T ss_dssp ----ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred ----EecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHH-HHHHHHHHHHHHHHHhccHh
Confidence 467899999999999999999999999999999999999 77778888888888887654
No 59
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.39 E-value=2.2e-12 Score=120.06 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEE
Q 001353 616 VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELK 695 (1093)
Q Consensus 616 ~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~ 695 (1093)
..++++.++++++++++++|.+|+|+++|+++++++|++.++++|+++. .+.+++....+...+...+.++.....++.
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVN-MLHVPGDTEHITSEVISAVENQGKWTGEIR 83 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGG-GGSCTTTHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHHHhhcCceEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHH-HhcCcchhhHHHHHHHHHHHcCCcccceEE
Confidence 3467889999999999999999999999999999999999999999998 777777777776667777666655444444
Q ss_pred EEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHH
Q 001353 696 LRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKV 739 (1093)
Q Consensus 696 l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~ 739 (1093)
+ ..++|..+|+.++..|+.+.+|.+.|++++++|||++|+
T Consensus 84 ~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 84 M----LHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp E----ECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred E----EccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 3 467899999999999999999999999999999999986
No 60
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.38 E-value=4.7e-12 Score=143.18 Aligned_cols=201 Identities=12% Similarity=0.134 Sum_probs=142.4
Q ss_pred EEEEC-CCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCC--------CceEEEEEEEeee
Q 001353 631 IFGVD-SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEE--------DKNVELKLRKFEL 701 (1093)
Q Consensus 631 I~~~D-~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~--------~~~~e~~l~~~~~ 701 (1093)
+++++ .+|+|+|+|+.+..++||++++++|++++ +++||++.+.+...+...+.... .+.+-.++.....
T Consensus 6 ~~vv~~~~G~i~yvS~~~~~~LGy~~~el~G~s~~-d~ihp~D~~~f~~~L~~gl~~~~~~~~~~~~~rsffcR~~rr~~ 84 (339)
T 3rty_A 6 CCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFI-DFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRYR 84 (339)
T ss_dssp EEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGG-GGBCHHHHHHHHHHHHTTSCCC----------CCEEEEEEECCC
T ss_pred EEEEECCCcEEEEEChHHHHHcCCCHHHHCCCcHH-HhcCHHHHHHHHHHHhcCCCCCccccCCCCCCceEEEEEEeccC
Confidence 46677 69999999999999999999999999999 99999999987776654321110 1223333221100
Q ss_pred ------------ccCCcEEEEEEEEEEeecC---------CCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHHhcCC
Q 001353 702 ------------QKQHSVVYILVNACTSRDY---------KNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNP 760 (1093)
Q Consensus 702 ------------~kdG~~~~v~v~~~pi~d~---------~g~v~gv~~v~~DITerK~aEe~L~~se~~lr~i~~~~~~ 760 (1093)
.++..++|+.....++.+. .|...+++.++.+++.......++ +. ..
T Consensus 85 ~l~s~gy~v~~~~~~~~p~~l~~~~~~~~~e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~p~e~----------~~--~~ 152 (339)
T 3rty_A 85 GLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDEI----------LS--QK 152 (339)
T ss_dssp -------------CCEEEEEEEEEEEECCCC----------CCCEEEEEEEEECCCSCSSTTBB----------CC--SS
T ss_pred CCCcCCcceecccccceeEEEEEEEeccccccccccccccCCceEEEEEEcccCCccccccchh----------hc--cC
Confidence 1223345555555565554 567778889999998643321110 00 01
Q ss_pred CCCceEEecCCCcEeechhhhHHHhCCCcchhcc----------------------c-cCCC----ccceeeEEEccCCc
Q 001353 761 LIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------------------I-TGQG----TENFPFGFFNRQGQ 813 (1093)
Q Consensus 761 li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG----------------------~-~~~~----~~~~e~~~~~kdG~ 813 (1093)
....++..|.+|+++++|+++..++||+++|++| . .+.. ....+++++++||.
T Consensus 153 ~~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG~ 232 (339)
T 3rty_A 153 SPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGC 232 (339)
T ss_dssp CCEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTSC
T ss_pred CceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCCC
Confidence 1125778899999999999999999999999999 1 1222 23578999999999
Q ss_pred EEEEEEEEeEeecCC-CcEEEEEEEEeecccC
Q 001353 814 FVEVALTASRRTDAE-GKVIGCFCFMQILVPD 844 (1093)
Q Consensus 814 ~~~v~~~~~~i~d~~-G~v~g~i~~~~DITe~ 844 (1093)
++|++.+..+++|.. +++..++|.-+.++.-
T Consensus 233 ~vWlet~~~~~~np~s~~~~~II~~h~vi~~p 264 (339)
T 3rty_A 233 YVLLETEWTSFVNPWSRKLEFVVGHHRVFQGP 264 (339)
T ss_dssp EEEEEEEEEEEECTTTCSEEEEEEEEEEEECC
T ss_pred EEEEEEEEEEEECCCCCCeeEEEEEEEECCCC
Confidence 999999999999864 6788888888888763
No 61
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.38 E-value=2.8e-13 Score=162.86 Aligned_cols=109 Identities=15% Similarity=0.171 Sum_probs=93.5
Q ss_pred EEecHHHHHHHHHHHHHHHHHcCCCCCC---eEEEEEEeCC-ccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-
Q 001353 971 LNGDRIRLQLVLSDFLHCVVRHAPSPDG---WVEIKVLPGL-KLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ- 1045 (1093)
Q Consensus 971 v~~D~~~L~qVl~nLl~NAik~t~~~~g---~I~I~v~~~~-~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~- 1045 (1093)
+.+|+..|.+++.||+.||++|+.. +| .|.|.+...+ + .+.|+|.|||+|||++.++++|++|++
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~-~g~~~~I~V~i~~~~~~---------~~~I~V~DnG~GIp~e~l~~iF~~~~at 100 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEE-AGILPDILVQVERTGPD---------YVTVIIEDNGPGIVREQIPKVFAKLLYG 100 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTT-TSCSCEEEECCEEETTT---------EEEEEEECCSCCCCGGGHHHHHSCCCCC
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhh-cCCCcEEEEEEEECCCc---------EEEEEEEECCCCCCHHHHHHHhhhhccC
Confidence 6689999999999999999999875 45 8888877665 5 789999999999999999999987632
Q ss_pred --------CCCCccchHHHHHHHHHHcCCE-EEEEeeCCe--eEEEEEEeecCCc
Q 001353 1046 --------WTTPEGLGLKLSRKLLIMMNGR-VRYVRENSK--CYFVIDLELKTRG 1089 (1093)
Q Consensus 1046 --------~~~GtGLGL~ivr~ive~hgG~-I~v~S~~gg--t~F~v~LPlp~~~ 1089 (1093)
..+|+|+||++|+.+++.|||+ |+++|..++ +.|++++|+|...
T Consensus 101 skf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~ 155 (621)
T 2q2e_B 101 SRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTST 155 (621)
T ss_dssp --CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSS
T ss_pred CccccccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhc
Confidence 3468999999999999999999 899998765 6778888887763
No 62
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.38 E-value=2.9e-12 Score=118.67 Aligned_cols=111 Identities=19% Similarity=0.102 Sum_probs=93.8
Q ss_pred HHHhcCccEEEECC---CCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEe
Q 001353 623 LIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKF 699 (1093)
Q Consensus 623 lie~~~~~I~~~D~---dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~ 699 (1093)
.+++++++++++|. +|+|+++|+++++++|++.++++|+++. .+.+++........+...+..+.....++.+
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 77 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNAR-FLQGPETDQATVQKIRDAIRDQRETTVQLIN--- 77 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE---
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHH-HhcCCCCChHHHHHHHHHHHcCCCcceEEEE---
Confidence 47899999999999 9999999999999999999999999987 7888777676766777777666654444443
Q ss_pred eeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhH
Q 001353 700 ELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEK 738 (1093)
Q Consensus 700 ~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK 738 (1093)
.+++|..+|+.++..|+++.+|.+.+++++++|||+++
T Consensus 78 -~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 78 -YTKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp -ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred -ecCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence 46899999999999999999999999999999999874
No 63
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.38 E-value=3.6e-12 Score=119.42 Aligned_cols=123 Identities=12% Similarity=0.074 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCccEEEEC---CCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceE
Q 001353 616 VACEMVRLIETATAPIFGVD---SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692 (1093)
Q Consensus 616 ~~~~l~~lie~~~~~I~~~D---~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~ 692 (1093)
.+++++.++++++++++++| .+|+|+++|+++++++|++.++++|+++. .++++.........+...+..+.....
T Consensus 4 ~~~~~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T 2z6d_A 4 VSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCR-FLQGPDTDKNEVAKIRDCVKNGKSYCG 82 (130)
T ss_dssp ---CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChh-hccCCCCCchHHHHHHHHHHcCCccee
Confidence 44668899999999999999 99999999999999999999999999998 777776666555555555655554444
Q ss_pred EEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHH
Q 001353 693 ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDK 743 (1093)
Q Consensus 693 e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~ 743 (1093)
++.. .+++|..+|+.+...|+.+.+|.+.|++++++|||++|++|++
T Consensus 83 ~~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 83 RLLN----YKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EEEE----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC-----
T ss_pred EEEE----EcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhcc
Confidence 4332 4678999999999999999999999999999999999988754
No 64
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.38 E-value=9.4e-13 Score=124.89 Aligned_cols=115 Identities=9% Similarity=0.140 Sum_probs=86.7
Q ss_pred HHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccH-HHHHHHHHHHHcCCCCceEEEEEE
Q 001353 619 EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQ-GAVENLICRALLGEEDKNVELKLR 697 (1093)
Q Consensus 619 ~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~-~~~~~~l~~~l~g~~~~~~e~~l~ 697 (1093)
.|+.+++++|++|+ +|.+|+|+++|+++++++||++++++|+++. .+++++.. ..+...+...+..+.....++.+
T Consensus 4 ~~~~~~~~~~~~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 80 (120)
T 3mqq_A 4 DYKTAFHLAPIGLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFE-VLYPSSDEFERIGERISPVMIAHGSYADDRIM- 80 (120)
T ss_dssp CHHHHHHHCSSEEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGG-GGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEE-
T ss_pred hHHHHHhcCCceEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchh-hccCChhhHHHHHHHHHHHHhcCCcceEEEEE-
Confidence 37889999999996 5889999999999999999999999999987 67665332 34444444444444443444433
Q ss_pred EeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHH
Q 001353 698 KFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVL 740 (1093)
Q Consensus 698 ~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~a 740 (1093)
.+++|..+|+.++..|+ +.+|...+++++++|||++|++
T Consensus 81 ---~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 81 ---KRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp ---ECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred ---EeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 57899999999999998 5666677899999999999986
No 65
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.37 E-value=4.5e-12 Score=120.24 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCce
Q 001353 612 ELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKN 691 (1093)
Q Consensus 612 eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~ 691 (1093)
+|++++++|+.++++++++|+++|.+|+|+++|+++++++||+.+|++|+++. .+.++.........+.....+ ....
T Consensus 5 ~l~~se~~~~~l~e~~~d~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (117)
T 2r78_A 5 NLYFQSNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWG-VLSRGVDSGWAAASLARIVGG-EPLR 82 (117)
T ss_dssp SHHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTT-TTTTCSTTSHHHHHHHHHHTT-CCEE
T ss_pred HHHHhHHHHHHHHhcCCceEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHH-HhCCccchhHHHHHHHHHHcC-CcEE
Confidence 46778889999999999999999999999999999999999999999999976 665444333333444444433 3333
Q ss_pred EEEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 001353 692 VELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (1093)
Q Consensus 692 ~e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DIT 735 (1093)
.+.. ..++||+.+|+.++..|+. +|. ++++++|||
T Consensus 83 ~e~~----~~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 83 EERT----VWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp EEEE----EECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred EEEE----EEecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 3333 3589999999999999986 455 567889998
No 66
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.35 E-value=2.9e-12 Score=119.87 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCc--cccccccccHHHHHHHHHHHHcCCCCceEE
Q 001353 616 VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSL--IDEVVHEESQGAVENLICRALLGEEDKNVE 693 (1093)
Q Consensus 616 ~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~--~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e 693 (1093)
++++|+.++++++++++.+|.+|+++++|+++++++||++++++|+.. . ++++|++.+.+...+..++.++.....+
T Consensus 2 s~~~~~~l~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~-~~i~p~d~~~~~~~~~~~~~~~~~~~~e 80 (118)
T 3icy_A 2 NAEELQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTL-SMIHHDDRHMLSNAYSKLREAKHSLTLV 80 (118)
T ss_dssp HHHHHHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGG-GGBCGGGHHHHHHHHHHHHHSCCEEEEE
T ss_pred cHHHHHHHHhcCCceEEEEEcCCCceEEechhHhhcCCCHHHccCChhHHH-HHcCHHHHHHHHHHHHHHHhcCCCceEE
Confidence 357889999999999999999999999999999999999999888764 4 7889999999999998888777655555
Q ss_pred EEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 001353 694 LKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (1093)
Q Consensus 694 ~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DIT 735 (1093)
+++ .+++|+.+|+.....|+++.+|.+.+++++++|||
T Consensus 81 ~r~----~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 81 YRI----VTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEE----ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEE----ECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 554 46899999999999999999999999999999998
No 67
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.34 E-value=3.2e-12 Score=125.64 Aligned_cols=113 Identities=8% Similarity=0.137 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc------------------------ccC
Q 001353 742 DKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------------------ITG 797 (1093)
Q Consensus 742 e~L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG------------------------~~~ 797 (1093)
++|++++++|+.++++.+. ++|.+|.++.+++||+++.+++||+++++.+ ..+
T Consensus 2 ~aL~~se~rl~~~~~~~~~---g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~ 78 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASA---GLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEH 78 (142)
T ss_dssp -------CCHHHHHHHTTC---EEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc---EEEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhC
Confidence 5688899999999999998 8999999999999999999999999888765 223
Q ss_pred CCccceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHHHHHHhHHHH
Q 001353 798 QGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDM 857 (1093)
Q Consensus 798 ~~~~~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~elq~~~e~ 857 (1093)
......++++.+++|+++|+...+.++.|.+|.+.+++|+++|||++|+.+.++++..++
T Consensus 79 ~~~~~~e~r~~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~ 138 (142)
T 3mr0_A 79 RDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREE 138 (142)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHH
Confidence 344678899999999999999999999999999999999999999999999876665544
No 68
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.33 E-value=3.4e-12 Score=119.39 Aligned_cols=120 Identities=12% Similarity=0.180 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHhcCccEEEECCC-CcEEEecHHHHHhcCCCccccCCCC--ccccccccccHHHHHHHHHHHHcC
Q 001353 610 VDELSSVACEMVRLIETATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKS--LIDEVVHEESQGAVENLICRALLG 686 (1093)
Q Consensus 610 ~~eL~~~~~~l~~lie~~~~~I~~~D~d-G~I~~~N~~~~~llG~~~eeliG~~--~~~~lv~~~~~~~~~~~l~~~l~g 686 (1093)
+++|++.+++|+.++++++++++++|.+ |+++++|+++++++|++.++++|++ +. +++++++.+.+...+.....+
T Consensus 3 e~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (125)
T 3eeh_A 3 KQQAAKSERRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFL-NGIHPEDRELMKDTMQSLMDG 81 (125)
T ss_dssp -------CHHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGG-GGBCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHH-HhcCHHHHHHHHHHHHHHHcC
Confidence 4567778899999999999999999999 9999999999999999999999988 55 778888888888888775544
Q ss_pred CCCceEEEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 001353 687 EEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (1093)
Q Consensus 687 ~~~~~~e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DIT 735 (1093)
. ....++++ .+++|..+|+.+...|+.+.+|.+.+++++++|||
T Consensus 82 ~-~~~~e~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 82 E-SADVECRV----NATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp C-CEEEEEEE----CGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred C-CccEEEEE----EcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 3 33344433 46789999999999999999999999999999998
No 69
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.33 E-value=7.2e-12 Score=117.26 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=84.2
Q ss_pred cCccEEEECC---CCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeecc
Q 001353 627 ATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQK 703 (1093)
Q Consensus 627 ~~~~I~~~D~---dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~k 703 (1093)
++++|+++|. +|+|+++|+++++++||+.+|++|++.. .+.++.........+..++..+.....++.. .++
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~~k 76 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCR-FLQGEGTDPKEVQKIRDAIKKGEACSVRLLN----YRK 76 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE----ECT
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCch-hcCCCCCCHHHHHHHHHHHHcCCcEEEEEEE----EcC
Confidence 5789999994 7999999999999999999999999976 6666654443334444455444443344333 578
Q ss_pred CCcEEEEEEEEEEeecCCCCEEEEEEEEEecch
Q 001353 704 QHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736 (1093)
Q Consensus 704 dG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITe 736 (1093)
||+.+|+.++..|++|.+|++.+++++.+|||+
T Consensus 77 dG~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 77 DGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp TSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 999999999999999999999999999999996
No 70
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.33 E-value=4e-12 Score=126.64 Aligned_cols=136 Identities=11% Similarity=0.063 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCC
Q 001353 608 QGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687 (1093)
Q Consensus 608 q~~~eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~ 687 (1093)
+..+++...++.+..++++++++++++|.+|+|+++|+++++++|++.++++|+++. +++++.....+...+.....++
T Consensus 30 ~~~~~~~~~~~~~~~~l~~~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 108 (167)
T 1v9y_A 30 KLTDADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNID-MLIPRDLRPAHPEYIRHNREGG 108 (167)
T ss_dssp ----------CCHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGG-GGSCGGGTTTHHHHHHHHHC--
T ss_pred HHHHHHhhhhHHHHHHHHhCCCCEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChh-hccCccccchHHHHHHHHhhcC
Confidence 344566777788999999999999999999999999999999999999999999998 8888877666666777776655
Q ss_pred CCceEEEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHH
Q 001353 688 EDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIR 746 (1093)
Q Consensus 688 ~~~~~e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~ 746 (1093)
......+.......+++|..+|+.+...|+ +.+|.+ +++++++|||++|+++++|+.
T Consensus 109 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~-~~~~~~~DiT~~~~~e~~l~~ 165 (167)
T 1v9y_A 109 KARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQKEQTRQ 165 (167)
T ss_dssp --------CEEEEECTTSCEEEEEEEEEEE-EETTEE-EEEEEEEC-------------
T ss_pred CCcccccceEEEEEcCCCcEEEEEEEEEEE-ecCCCE-EEEEEEecCcHHHHHHHHHHh
Confidence 431111111222346789999999999998 445655 489999999999999988764
No 71
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.31 E-value=9.3e-12 Score=118.16 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhccc----------------------cCCCccceee
Q 001353 748 QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGI----------------------TGQGTENFPF 805 (1093)
Q Consensus 748 e~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG~----------------------~~~~~~~~e~ 805 (1093)
+++++.+++++++ +|+++|.+|+|+++|+++++++||+++|++|. ..+..+..++
T Consensus 4 ~~~~~~~~~~~~~---~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 80 (120)
T 2gj3_A 4 PEIFRQTVEHAPI---AISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVL 80 (120)
T ss_dssp HHHHHHHHHHCSS---EEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhCCC---eEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEE
Confidence 4678899999998 89999999999999999999999999999991 1222345567
Q ss_pred EEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCc
Q 001353 806 GFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDL 845 (1093)
Q Consensus 806 ~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k 845 (1093)
...++||+.+|+.++..|+.|.+|.+.+++++++|||++|
T Consensus 81 ~~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 81 VNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred EEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 8889999999999999999999999999999999999975
No 72
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.30 E-value=2.4e-11 Score=115.80 Aligned_cols=120 Identities=17% Similarity=0.177 Sum_probs=88.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCcccc--CCCCccccccccccHHHHHHHHHHH
Q 001353 606 KMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEA--MGKSLIDEVVHEESQGAVENLICRA 683 (1093)
Q Consensus 606 l~q~~~eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eel--iG~~~~~~lv~~~~~~~~~~~l~~~ 683 (1093)
+++.+++|++++++|+.+++++|++|+++|.+|+|++||+++++++||+++++ +|+++. ++++ +...+...+...
T Consensus 5 r~~~e~~L~~~~~~~~~l~e~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~-~~~~--~~~~~~~~~~~~ 81 (126)
T 3bwl_A 5 RKRREKRLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEF-DLMF--DAEDVQTQLSGF 81 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGT-BTTC--CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchh-hccC--CHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999 567777 6666 333333322222
Q ss_pred HcCCCCceEEEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 001353 684 LLGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (1093)
Q Consensus 684 l~g~~~~~~e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DIT 735 (1093)
..+ .....+ ....+++|+.+|+.++..++.+ +|. .+++++++|||
T Consensus 82 ~~~-~~~~~e----~~~~~~dG~~~~~~~~~~~~~~-~~~-~~~~~~~~DIT 126 (126)
T 3bwl_A 82 SVD-ERRKFE----GLYERRDGSTMSVEVHLLRFNL-EGE-DRFLAISRDIT 126 (126)
T ss_dssp CTT-CEEEEE----EEEECTTSCEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred hcC-CCcceE----EEEEeCCCCEEEEEEEeEEEec-CCc-EEEEEEEEeCC
Confidence 211 222222 2235789999999988888744 343 35778899998
No 73
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.28 E-value=2.7e-11 Score=115.33 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=86.7
Q ss_pred ecchhHHHHHHHHHHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhc--ccc--------------
Q 001353 733 DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVI--GIT-------------- 796 (1093)
Q Consensus 733 DITerK~aEe~L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEli--G~~-------------- 796 (1093)
|+|++|++|++|++++++|+.+++++++ +|+++|.+|+++++|+++++++||+++|++ |..
T Consensus 1 ~~t~r~~~e~~L~~~~~~~~~l~e~~~~---~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~~~~~~~~~ 77 (126)
T 3bwl_A 1 SNAERKRREKRLEETSSRLEALFENSPD---MIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMFDAEDVQTQ 77 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCSS---EEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTCCHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhCCc---EEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccCCHHHHHHH
Confidence 6899999999999999999999999998 899999999999999999999999999994 410
Q ss_pred -----CCCccceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecc
Q 001353 797 -----GQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 842 (1093)
Q Consensus 797 -----~~~~~~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DIT 842 (1093)
......++..+.++||+.+|+.++..++. .+|.. +++++++|||
T Consensus 78 ~~~~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~-~~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 78 LSGFSVDERRKFEGLYERRDGSTMSVEVHLLRFN-LEGED-RFLAISRDIT 126 (126)
T ss_dssp HHTCCTTCEEEEEEEEECTTSCEEEEEEEEEEEE-ETTEE-EEEEEEEEC-
T ss_pred HHHHhcCCCcceEEEEEeCCCCEEEEEEEeEEEe-cCCcE-EEEEEEEeCC
Confidence 11112345677899999999998888764 34544 4788999997
No 74
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.28 E-value=6.7e-12 Score=118.65 Aligned_cols=120 Identities=14% Similarity=0.178 Sum_probs=91.2
Q ss_pred HHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEee
Q 001353 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700 (1093)
Q Consensus 621 ~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~ 700 (1093)
+.++++++++++++|.+|+|+++|+++++++|++.++++|+++. +++++++...+...+..+..++.. ..++.+
T Consensus 2 ~~l~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---- 75 (126)
T 3mjq_A 2 KNFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHIL-TITSAGKMAEGEKILAELFAGKKE-SLPLSL---- 75 (126)
T ss_dssp CTTGGGCSSEEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHH-HHHCTTCHHHHHHHHHHHHHTCCS-EEEEEE----
T ss_pred hhHHhhCCceEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHH-HHcCchhHHHHHHHHHHHHhCCCc-eeEEEE----
Confidence 45789999999999999999999999999999999999999998 888888888888888888877665 344433
Q ss_pred eccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHH
Q 001353 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQ 748 (1093)
Q Consensus 701 ~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se 748 (1093)
.+++|..+|+.++..|..+ +...+++++++|||++|++++++..+.
T Consensus 76 ~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~~~~~~~~ 121 (126)
T 3mjq_A 76 EKKEGTSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERASSPPFLEH 121 (126)
T ss_dssp ECTTSCEEEEEEEEEEEES--SSSEEEEEEEEECC-------------
T ss_pred EccCCCEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhhcccchhh
Confidence 4678999999999987664 346789999999999999998876553
No 75
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.26 E-value=2.3e-11 Score=137.69 Aligned_cols=121 Identities=18% Similarity=0.073 Sum_probs=103.4
Q ss_pred HHHHHhcCccEEEECC---CCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEE
Q 001353 621 VRLIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLR 697 (1093)
Q Consensus 621 ~~lie~~~~~I~~~D~---dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~ 697 (1093)
..++++++++|+++|. +|+|++||+++++++||++++++|+++. .+.++++.......+...+..+.....++.+
T Consensus 14 ~~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 91 (332)
T 2wkq_A 14 ATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNAR-FLQGPETDRATVRKIRDAIDNQTEVTVQLIN- 91 (332)
T ss_dssp CCCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE-
T ss_pred HhHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCch-hhcCCCCCHHHHHHHHHHHHcCCeeEEEEEE-
Confidence 3468999999999999 9999999999999999999999999998 8888776666666666666666654444443
Q ss_pred EeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHH
Q 001353 698 KFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIR 746 (1093)
Q Consensus 698 ~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~ 746 (1093)
.+++|+.+|+.++..|++|.+|.+.|++++++|||++|+.+++++.
T Consensus 92 ---~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~~~ 137 (332)
T 2wkq_A 92 ---YTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREG 137 (332)
T ss_dssp ---ECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHHHH
T ss_pred ---EcCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhccc
Confidence 5789999999999999999999999999999999999988877643
No 76
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.26 E-value=3.1e-11 Score=114.10 Aligned_cols=112 Identities=14% Similarity=0.123 Sum_probs=94.7
Q ss_pred HHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCC-ceEEEEEEEee
Q 001353 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED-KNVELKLRKFE 700 (1093)
Q Consensus 622 ~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~-~~~e~~l~~~~ 700 (1093)
.++++++++|+.+|.+|+|+++|+++++++||++++++|+++. ++++|++.+.+...+...+.++.. ...++++
T Consensus 7 ~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~-~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~---- 81 (121)
T 2kdk_A 7 EINVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCY-EYFHQDDHNNLTDKHKAVLQSKEKILTDSYKF---- 81 (121)
T ss_dssp CCCCCSSEEEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTT-TTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEE----
T ss_pred ccccCCccEEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHH-HeeCHHHHHHHHHHHHHHHhCCCCCccEEEEE----
Confidence 4677899999999999999999999999999999999999988 899999998888888877765332 2344443
Q ss_pred eccCCcEEEEEEEEEEeecCC-CCEEEEEEEEEecchhH
Q 001353 701 LQKQHSVVYILVNACTSRDYK-NNVKGVCFVGQDITHEK 738 (1093)
Q Consensus 701 ~~kdG~~~~v~v~~~pi~d~~-g~v~gv~~v~~DITerK 738 (1093)
.+++|+.+|+.++..|++|.. +.+.+++++.+|||+.+
T Consensus 82 ~~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 82 RAKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp ECSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSCC
T ss_pred EEcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEeccccC
Confidence 578999999999999999886 56777899999998764
No 77
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.22 E-value=1.8e-10 Score=118.77 Aligned_cols=153 Identities=7% Similarity=0.080 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHH
Q 001353 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAA 290 (1093)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~ 290 (1093)
+..+++.++...+.+ +.+++++++.+++.+++++++||+.||.++++....+.++...++. .+..+|. ..-.
T Consensus 27 ~~~~~L~~is~~l~~--~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~ 98 (184)
T 3p01_A 27 AQMSLLTVLVQVTQA--SNSLEAILTPIATAFAESFAVNACILQMLEGQTLSTIQGFYSQQGT---VNNWLNQ---DPLT 98 (184)
T ss_dssp HHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEEEESSSS---CCCCGGG---CHHH
T ss_pred HHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCceeeeeeeccccCc---cCcccCC---CcHH
Confidence 345666777778888 7799999999999999999999999999944322222222333332 2333442 2345
Q ss_pred HHhHhcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEee
Q 001353 291 RFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCH 370 (1093)
Q Consensus 291 r~l~~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h 370 (1093)
...+..++..+|.|+...|- .++..+++..|++|.|++||+.+| ++||.|.+|
T Consensus 99 ~~~~~~~~~~~i~d~~~~~~-----------------------~~~~~~~~~~~~~s~l~vPL~~~~----~~~GvL~l~ 151 (184)
T 3p01_A 99 NEAIATGQIQVAANIAKDPK-----------------------LASISQYQDNGIQSHVVIPITYRN----EMLGVLSLQ 151 (184)
T ss_dssp HHHHHHCSCEEESCGGGCHH-----------------------HHTCHHHHHHTCCEEEEEEEEETT----EEEEEEEEE
T ss_pred HHHHhhCCeEEEeccccCcc-----------------------ccchhHHHHhCccEEEEEEEEECC----EEEEEEEeC
Confidence 56677888888888766552 122467888999999999999998 999999997
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 001353 371 HTSPRYIPFPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 371 ~~~p~~~~~~~r~~~~~l~~~~~~~l~~ 398 (1093)
+..|+.|+.++..+++.+|.++++.|..
T Consensus 152 ~~~~~~f~~~d~~ll~~lA~q~aiAi~n 179 (184)
T 3p01_A 152 WQQPISLREDELTLIHLSAQLVAIALTS 179 (184)
T ss_dssp ESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999998853
No 78
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.22 E-value=1e-10 Score=130.90 Aligned_cols=204 Identities=9% Similarity=0.010 Sum_probs=135.4
Q ss_pred HHHhcCccEEEECCC-CcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHH--------------HcCC
Q 001353 623 LIETATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRA--------------LLGE 687 (1093)
Q Consensus 623 lie~~~~~I~~~D~d-G~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~--------------l~g~ 687 (1093)
+++++..-+++++.+ |+|+|+|+.+..++||+.++++|+++. +++||+|.+.+...+... ....
T Consensus 31 ~L~aldgF~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~-d~ihp~D~~~f~~ql~~~~lP~~~~~~~~~~~~~~~ 109 (317)
T 4dj3_A 31 TSKNTDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFV-DLLAPQDVRAFYAHTAPTQLPFWNNWTQRASQYECA 109 (317)
T ss_dssp HTSCTTEEEEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGG-GGBCGGGHHHHHHHTCTTTCCCCC----------CC
T ss_pred HHhccCCEEEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchh-hhcChhhHHHHHHhhcccCCCCcCCCcccccccCCC
Confidence 567777777888886 999999999999999999999999999 999999999887754110 1112
Q ss_pred CCceEEEEEEEeeeccCCcEEEEEEEEEEee--c---CCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001353 688 EDKNVELKLRKFELQKQHSVVYILVNACTSR--D---YKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLI 762 (1093)
Q Consensus 688 ~~~~~e~~l~~~~~~kdG~~~~v~v~~~pi~--d---~~g~v~gv~~v~~DITerK~aEe~L~~se~~lr~i~~~~~~li 762 (1093)
..+.+-++++.-...++.+...+.+...... . .++....++.+.+=.+.-+..++. +.. ..
T Consensus 110 ~~rsF~CRmr~g~~~~~~~y~~~~~~g~l~~~~~~~~~~~~~~clv~v~~~~~~~~~~~~~-----------~~~-~~-- 175 (317)
T 4dj3_A 110 PAKPFFCRICGGGDREKRHYSPFRILPYLVHVHSSAQPEPEPCCLTLVEKIHSGYEAPRIP-----------VDK-RI-- 175 (317)
T ss_dssp CCCCEEEEECCCCCSSSCCCEEEEEEEEEEECCCCSSSCSCEEEEEEEEECCCTTSSSCCC-----------GGG-CE--
T ss_pred CCceEEEEEeCCCCCCCCceEEEEEEeEEEeccCCCCCCCCceEEEEEEecCCCcCCCCcc-----------cCC-Cc--
Confidence 2334444544311112223344444443221 1 122333444443322221111110 011 11
Q ss_pred CceEEecCCCcEeechhhhHHHhCCCcchhcc----------------------ccCCCc---cceeeEEEccCCcEEEE
Q 001353 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------------------ITGQGT---ENFPFGFFNRQGQFVEV 817 (1093)
Q Consensus 763 ~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG----------------------~~~~~~---~~~e~~~~~kdG~~~~v 817 (1093)
-+...+.+|+++++|+++..++||.++|++| ..++.. ...+++++++||.++|+
T Consensus 176 -Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwv 254 (317)
T 4dj3_A 176 -FTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVIL 254 (317)
T ss_dssp -EEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEE
T ss_pred -eEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEE
Confidence 4677899999999999999999999999999 122222 46789999999999999
Q ss_pred EEEEeEeecC-CCcEEEEEEEEeecc
Q 001353 818 ALTASRRTDA-EGKVIGCFCFMQILV 842 (1093)
Q Consensus 818 ~~~~~~i~d~-~G~v~g~i~~~~DIT 842 (1093)
+....+++|. .+++..++|.-+-++
T Consensus 255 et~~~~~~np~s~~~e~II~~h~v~~ 280 (317)
T 4dj3_A 255 DSSWSSFVNPWSRKVSFIIGRHKVRT 280 (317)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEECC
T ss_pred EEEEEEEECCCCCcccEEEEEEEecc
Confidence 9999999986 577777888776443
No 79
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.22 E-value=4.7e-11 Score=121.16 Aligned_cols=100 Identities=8% Similarity=-0.032 Sum_probs=88.8
Q ss_pred HHHHHHHHHhcCCCCCceEEecCC---CcEeechhhhHHHhCCCcchhcc----------------------ccCCCccc
Q 001353 748 QGDYEAIIQSVNPLIPPIFASDEN---ACCSEWNAAMEKVTGWMRHEVIG----------------------ITGQGTEN 802 (1093)
Q Consensus 748 e~~lr~i~~~~~~li~~I~~~D~~---g~i~~~N~a~~~l~G~~~eEliG----------------------~~~~~~~~ 802 (1093)
.++++.+++++++ +|+++|.+ |+|+++|+++++++||++++++| ...+....
T Consensus 6 ~~~~~~~~~~~~~---~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (176)
T 4hia_A 6 FEKIRAVFDRSGV---ALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQ 82 (176)
T ss_dssp HHHHHHHHHHCSS---CCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHhcCCC---cEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceE
Confidence 4568899999998 89999999 99999999999999999999998 12233455
Q ss_pred eeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHHHH
Q 001353 803 FPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALE 850 (1093)
Q Consensus 803 ~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~e 850 (1093)
.++...+++|+.+|+.++..|+.+.+|.+.+++++++|||++++.+.+
T Consensus 83 ~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~ 130 (176)
T 4hia_A 83 VVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEA 130 (176)
T ss_dssp EEEEEECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHH
T ss_pred EEEEEEcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHH
Confidence 677888999999999999999999999999999999999999988865
No 80
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.21 E-value=1.3e-11 Score=123.37 Aligned_cols=113 Identities=11% Similarity=0.083 Sum_probs=91.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCCCceEEecC---CCcEeechhhhHHHhCCCcchhcc-----------------
Q 001353 735 THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIG----------------- 794 (1093)
Q Consensus 735 TerK~aEe~L~~se~~lr~i~~~~~~li~~I~~~D~---~g~i~~~N~a~~~l~G~~~eEliG----------------- 794 (1093)
..+++++.++++.+..++.+++++++ +|+++|. +|+++++|+++++++||++++++|
T Consensus 21 ~~~~~~~~~l~~~~~~~~~~~~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~ 97 (166)
T 3ue6_A 21 DNPSKANRILEDPDYSLVKALQMAQQ---NFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVD 97 (166)
T ss_dssp ----------CCCCCHHHHHHHHTTS---CEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCc---eEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHH
Confidence 45667778888888899999999998 8999999 799999999999999999999998
Q ss_pred -----ccCCCccceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHHHH
Q 001353 795 -----ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALE 850 (1093)
Q Consensus 795 -----~~~~~~~~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~e 850 (1093)
...+.....++.+.+++|..+|+.++..|+.+.+|.+.+++++++|||++++++..
T Consensus 98 ~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~ 158 (166)
T 3ue6_A 98 KIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLV 158 (166)
T ss_dssp HHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEEEEcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHH
Confidence 11233445677888999999999999999999999999999999999998776643
No 81
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.21 E-value=5.9e-11 Score=114.27 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=87.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcccc------C-----------
Q 001353 735 THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGIT------G----------- 797 (1093)
Q Consensus 735 TerK~aEe~L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG~~------~----------- 797 (1093)
|+++++|++|++++..|+.+++++++ +|+++|.+|+|++||+++++++||+++|++|.. .
T Consensus 2 ~~~~~~e~~l~~~~~~~~~l~~~~~d---~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~ 78 (130)
T 1d06_A 2 SHMLETEDVVRARDAHLRSILDTVPD---ATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQ 78 (130)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHTTCSS---EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCcC---eEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHH
Confidence 78999999999999999999999998 899999999999999999999999999999910 0
Q ss_pred -----CC----ccceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecc
Q 001353 798 -----QG----TENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 842 (1093)
Q Consensus 798 -----~~----~~~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DIT 842 (1093)
.. ....++...++||+.+|+.++..++.+.++ .+++++++|||
T Consensus 79 ~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~~~--~~~~~~~~DIT 130 (130)
T 1d06_A 79 RYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGGE--RFFTGFIRDLT 130 (130)
T ss_dssp HHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEETTE--EEEEEEEEECC
T ss_pred HHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEECCe--EEEEEEEEECc
Confidence 00 012356778999999999999999986433 45889999997
No 82
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.20 E-value=9e-11 Score=126.26 Aligned_cols=149 Identities=13% Similarity=0.077 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhc------------CCCccccCCCCccccccccccHHHHHHHHHHHH
Q 001353 617 ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELT------------GLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684 (1093)
Q Consensus 617 ~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~ll------------G~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l 684 (1093)
.+++..++++++++|+++|.+|+|+|+|++++++| ||++++++|+++. .+.+.. ......+.. +
T Consensus 21 ~~~l~~iLd~~~~~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~-~~~~~~--~~~~~~~~~-~ 96 (233)
T 3vol_A 21 MARIKSALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANID-VFHKNP--AHQRHLLAN-L 96 (233)
T ss_dssp HHHHHHHHTTSSSEEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGG-GGSSSH--HHHHHHHHT-C
T ss_pred HHHHHHHHhcCCCcEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHH-HHcCCH--HHHHHHHHh-c
Confidence 36678899999999999999999999999999998 8999999999987 665431 222222222 2
Q ss_pred cCCCCceEEEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 001353 685 LGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPP 764 (1093)
Q Consensus 685 ~g~~~~~~e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se~~lr~i~~~~~~li~~ 764 (1093)
.+ ..+..+. .+| +|+.++..|++|.+|++.|++.+++|||+++++|++++...+... .
T Consensus 97 ~~----~~~~~~~-----~~g--~~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~a~~-------~---- 154 (233)
T 3vol_A 97 TG----VHKAELN-----LGG--RRFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQAAA-------A---- 154 (233)
T ss_dssp CS----CEEEEEE-----ETT--EEEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHHHHH-------C----
T ss_pred cc----ceeEEEE-----ECC--EEEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHHHHh-------C----
Confidence 11 1222222 234 478999999999999999999999999999999988765543322 1
Q ss_pred eEEecCCCcEe-echhhhHHHhCCCcchhcc
Q 001353 765 IFASDENACCS-EWNAAMEKVTGWMRHEVIG 794 (1093)
Q Consensus 765 I~~~D~~g~i~-~~N~a~~~l~G~~~eEliG 794 (1093)
-|..+++. ..|..+..-+|+...++++
T Consensus 155 ---gdl~~ri~~~~~~~~~~~l~~~ln~l~~ 182 (233)
T 3vol_A 155 ---GDFSKRVEEAGKEGFFLRLAKDLNSLVD 182 (233)
T ss_dssp ---C---------------------------
T ss_pred ---CcccccccccccchHHHHHHHHHHHHHH
Confidence 14455655 4556666666665555443
No 83
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.20 E-value=4.5e-11 Score=115.46 Aligned_cols=101 Identities=9% Similarity=0.051 Sum_probs=81.2
Q ss_pred HHHHhcCCCCCceEEecCCC---cEeechhhhHHHhCCCcchhccc----------------------cCCCccceeeEE
Q 001353 753 AIIQSVNPLIPPIFASDENA---CCSEWNAAMEKVTGWMRHEVIGI----------------------TGQGTENFPFGF 807 (1093)
Q Consensus 753 ~i~~~~~~li~~I~~~D~~g---~i~~~N~a~~~l~G~~~eEliG~----------------------~~~~~~~~e~~~ 807 (1093)
.+++++++ +|+++|.+| +|+++|+++++++||+++|++|. ........++.+
T Consensus 3 ~~~~~~~~---~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 79 (132)
T 2pr5_A 3 HMLDHVRV---GVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQN 79 (132)
T ss_dssp ---CCCCC---EEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred hHHhcCCC---cEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEE
Confidence 45677776 899999977 99999999999999999999991 112223456778
Q ss_pred EccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHHHHHHhHHHHH
Q 001353 808 FNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858 (1093)
Q Consensus 808 ~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~elq~~~e~~ 858 (1093)
.++||+.+|+.++..|+.+.+ +.+++++++|||++++.+.++++..++.
T Consensus 80 ~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~~l 128 (132)
T 2pr5_A 80 YKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLTEI 128 (132)
T ss_dssp ECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHHHH
Confidence 899999999999999999876 8889999999999998887766554443
No 84
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.19 E-value=9.3e-11 Score=109.43 Aligned_cols=111 Identities=8% Similarity=-0.006 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceE
Q 001353 613 LSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692 (1093)
Q Consensus 613 L~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~ 692 (1093)
+++..+.++.++++++++|+++|.+|+|+++|+++++++||++++++|+++. ++.++..... +.....++ ..
T Consensus 8 ~e~~~~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~-~~~~~~~~~~----~~~~~~~~-~~-- 79 (118)
T 3olo_A 8 SELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQ-DIDVDFALHD----WEEIRQKN-NY-- 79 (118)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGG-GTBTTGGGSC----HHHHHHHS-EE--
T ss_pred HHHHHHHHHHHHhcCCceEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChh-hcccccCHHH----HHHHHhcC-cE--
Confidence 3445566788999999999999999999999999999999999999999988 7766544333 22222222 22
Q ss_pred EEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 001353 693 ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (1093)
Q Consensus 693 e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DIT 735 (1093)
.......+++|..+|+.++..|+.+.+ ..+++++++|||
T Consensus 80 --~~e~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~DIT 118 (118)
T 3olo_A 80 --TFKTRYRSQSGRIFLVEMSLTFLEDQE--RRFSCVFVREKS 118 (118)
T ss_dssp --EEEEEEECTTCCEEEEEEEEEEEEETT--EEEEEEEEEEC-
T ss_pred --EEEEEEEccCCCEEEEEEEEEEEEECC--ccEEEEEEEeCC
Confidence 223334578999999999999987643 346778999998
No 85
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.18 E-value=6.9e-11 Score=111.05 Aligned_cols=100 Identities=12% Similarity=0.082 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc------------------------ccCCC
Q 001353 744 FIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------------------ITGQG 799 (1093)
Q Consensus 744 L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG------------------------~~~~~ 799 (1093)
|++++++|+.++++++. ++|.+|.+++++++|+++.+++|++++++.| ..++.
T Consensus 2 l~~~~~~l~~~~~~~~~---~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 78 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGI---GSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDR 78 (125)
T ss_dssp ---------------CC---EEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHHHhCCe---eEEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCC
Confidence 56778889999999988 8999999999999999999999999998876 23344
Q ss_pred ccceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcH
Q 001353 800 TENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQ 846 (1093)
Q Consensus 800 ~~~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~ 846 (1093)
....++++.+++|+.+|+.++..|+.+.+|.+.+++++++|||++|+
T Consensus 79 ~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 79 PFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred CceEEEEEECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 46778899999999999999999999999999999999999999864
No 86
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.17 E-value=4.6e-11 Score=113.25 Aligned_cols=93 Identities=9% Similarity=0.060 Sum_probs=78.8
Q ss_pred HHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc----------------------c-cCCCccceeeEE
Q 001353 751 YEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------------------I-TGQGTENFPFGF 807 (1093)
Q Consensus 751 lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG----------------------~-~~~~~~~~e~~~ 807 (1093)
++.+++++++ .|+..|.+|+++++|+++++++||+++|++| . ........++++
T Consensus 4 ~~ll~e~~~d---~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~ 80 (121)
T 3f1p_B 4 KGLNVCQPTR---FISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRF 80 (121)
T ss_dssp ----CCCCCE---EEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEE
T ss_pred ccceecCCCc---eEEEECCCceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEE
Confidence 3456677777 7999999999999999999999999999999 1 244457789999
Q ss_pred EccCCcEEEEEEEEeEeecC-CCcEEEEEEEEeecccCcH
Q 001353 808 FNRQGQFVEVALTASRRTDA-EGKVIGCFCFMQILVPDLQ 846 (1093)
Q Consensus 808 ~~kdG~~~~v~~~~~~i~d~-~G~v~g~i~~~~DITe~k~ 846 (1093)
.++||+++|+..+..++.|. +|.+.+++++.+|||++++
T Consensus 81 ~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 81 RSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp ECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred EecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 99999999999999999998 8999999999999999876
No 87
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.16 E-value=2.2e-11 Score=115.22 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEE
Q 001353 616 VACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELK 695 (1093)
Q Consensus 616 ~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~ 695 (1093)
.+++|+.++++++++|+++|.+|+|+++|+++++++|++.++++|+++. ++++++...............+... .
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~ 91 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLS-AVMDSEAANQRLEAGKSAVENGTAT----R 91 (125)
T ss_dssp ---------CCSCCEEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGG-GSSCHHHHHHHHHHHHHHHHHTSCE----E
T ss_pred HHHHHHHHHhcCCCeEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHH-HhCCHHHHHHHHHHHHHHhcCCCeE----E
Confidence 6788999999999999999999999999999999999999999999998 7775555555545445555554431 1
Q ss_pred EEEeeeccCCc-EEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 001353 696 LRKFELQKQHS-VVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (1093)
Q Consensus 696 l~~~~~~kdG~-~~~v~v~~~pi~d~~g~v~gv~~v~~DIT 735 (1093)
.++|. .+|+.++..|+.+. |...|++++++|||
T Consensus 92 ------~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 92 ------SEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp ------EEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred ------eEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 12355 78999999998765 66678999999998
No 88
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.16 E-value=2.2e-10 Score=128.29 Aligned_cols=204 Identities=10% Similarity=0.065 Sum_probs=134.4
Q ss_pred HHHhcCccEEEECCC-CcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHH---------------HcC
Q 001353 623 LIETATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRA---------------LLG 686 (1093)
Q Consensus 623 lie~~~~~I~~~D~d-G~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~---------------l~g 686 (1093)
+++++..-++++..+ |+|+|+|+.+..++||+.++++|++++ +++||+|.+.+...+... ...
T Consensus 31 lLqaldGF~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~-d~iHp~D~~~f~~qL~~~~lp~~~~~~~~~~~~~~~ 109 (320)
T 4dj2_A 31 TLRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFS-ELLAPQDVGVFYGSTTPSRLPTWGTGTSAGSGLKDF 109 (320)
T ss_dssp TTSCSSEEEEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGG-GGBCHHHHHHHHHHCCTTTCCBTTC-----------
T ss_pred HHhccCCEEEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHH-HhcCHHHHHHHHHhhcccCCCCcccCcccccccccC
Confidence 366777667778875 999999999999999999999999999 999999999887765320 011
Q ss_pred CCCceEEEEEEEeeeccCC--cEEEEEEEE--EEeecCCCC--EEEEEEEEEecchh-HHHHHHHHHHHHHHHHHHHhcC
Q 001353 687 EEDKNVELKLRKFELQKQH--SVVYILVNA--CTSRDYKNN--VKGVCFVGQDITHE-KVLMDKFIRLQGDYEAIIQSVN 759 (1093)
Q Consensus 687 ~~~~~~e~~l~~~~~~kdG--~~~~v~v~~--~pi~d~~g~--v~gv~~v~~DITer-K~aEe~L~~se~~lr~i~~~~~ 759 (1093)
+..+.+-++++.. ..++. +..++.+.. ..+.+.+|. ....+..+.-+-.- +..+. .....
T Consensus 110 ~~~rsF~CRmr~~-l~k~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~~li~a~~~~s~~~~~~i------------~~~~~ 176 (320)
T 4dj2_A 110 TQEKSVFCRIRGG-PDRDPGPRYQPFRLTPYVTKIRVSDGAPAQPCCLLIAERIHSGYEAPRI------------PPDKR 176 (320)
T ss_dssp --CCCEEEEECCC--------CCEEEEEEEEEEEECC---CCCEEEEEEEEEECCCSSSSSCC------------CGGGC
T ss_pred CCceeEEEEEEEe-ccCCCcccEEEEEEEEEecccccCCCCcccceeeeeeeeccCccccccc------------cCCCc
Confidence 1223344444322 12222 233333333 223455555 33333333333211 11110 00111
Q ss_pred CCCCceEEecCCCcEeechhhhHHHhCCCcchhcc----------------------cc-CCCcc-ceeeEEEccCCcEE
Q 001353 760 PLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------------------IT-GQGTE-NFPFGFFNRQGQFV 815 (1093)
Q Consensus 760 ~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG----------------------~~-~~~~~-~~e~~~~~kdG~~~ 815 (1093)
. -+...+.+|+++++|+++..++||.++|++| .. ++... ..+++++++||.++
T Consensus 177 ~---Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~v 253 (320)
T 4dj2_A 177 I---FTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYV 253 (320)
T ss_dssp E---EEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEE
T ss_pred e---EEEEecCCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEE
Confidence 1 4677899999999999999999999999999 22 22233 46999999999999
Q ss_pred EEEEEEeEeecC-CCcEEEEEEEEeeccc
Q 001353 816 EVALTASRRTDA-EGKVIGCFCFMQILVP 843 (1093)
Q Consensus 816 ~v~~~~~~i~d~-~G~v~g~i~~~~DITe 843 (1093)
|++.....+.|. .+++..++|.-..++.
T Consensus 254 wvet~~~~~~np~s~~~e~II~~h~v~~g 282 (320)
T 4dj2_A 254 TMDTSWAGFVHPWSRKVAFVLGRHKVRTA 282 (320)
T ss_dssp EEECEEEEEECTTTCSEEEEEEEEEESSC
T ss_pred EEEEEEEEEECCCCCCccEEEEEEEEccC
Confidence 999999999886 6888888888877764
No 89
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.16 E-value=1.5e-10 Score=115.68 Aligned_cols=123 Identities=15% Similarity=0.127 Sum_probs=92.3
Q ss_pred HHHHHHHHhcCccEEEECCCCcEEEecHH---HHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEE
Q 001353 618 CEMVRLIETATAPIFGVDSSGTINGWNAK---VAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVEL 694 (1093)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dG~I~~~N~~---~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~ 694 (1093)
.++.+++++++++|+++|.+|+|+|||++ ++++|| ..++++|+++. ++.++...+.+...+.. ++.+.....++
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~-~~~~~~~~~~v~~i~~~-l~~g~~~~~~~ 95 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVE-LCHPPKVLDKVKKVFEL-LRNGQRDKVNM 95 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGG-GSSCHHHHHHHHHHHHH-HHTTSBSEEEE
T ss_pred HHHHHHHHhCCCceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHH-HhCCHHHHHHHHHHHHH-HHcCCccEEEE
Confidence 45788999999999999999999999999 999999 66789999998 77665554444444444 44444444443
Q ss_pred EEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHH
Q 001353 695 KLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQ 748 (1093)
Q Consensus 695 ~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se 748 (1093)
.+. ..+..+++.++..|++|.+|+++|++.+++|||+.++.+++.++-+
T Consensus 96 ~~~-----~~~~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~~r~~~~ 144 (151)
T 2qkp_A 96 WFQ-----SERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEFNRDE 144 (151)
T ss_dssp EEE-----ETTTTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC-----
T ss_pred EEe-----cCCCCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhhhhhccc
Confidence 332 1222366899999999999999999999999999998888765543
No 90
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.12 E-value=9.1e-10 Score=122.83 Aligned_cols=205 Identities=10% Similarity=0.080 Sum_probs=124.4
Q ss_pred HHHhcCccEEEECCC-CcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHH-H------c--------C
Q 001353 623 LIETATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRA-L------L--------G 686 (1093)
Q Consensus 623 lie~~~~~I~~~D~d-G~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~-l------~--------g 686 (1093)
+++++..-+++++.+ |+|+|+|+.+..++||++++++|+++. +++||+|.+.+...+... + . .
T Consensus 20 ll~a~dgF~~vvs~~~G~i~yvS~s~~~~Lg~~~~el~g~s~~-d~iHp~D~~~~~~~L~~~~lp~~~~~~~~~~~~~~~ 98 (309)
T 3gdi_A 20 IVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFV-EFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFTQEC 98 (309)
T ss_dssp ---CTTEEEEEECTTTCBEEEECTTTTTTC-------CCSBGG-GGBCTTTHHHHHHHTCTTSSCBCC------------
T ss_pred HHHhcCCEEEEEECCCceEEEECCHHHHHcCCCHHHHcCCchh-hccCHhHHHHHHHhccccCCCCcccccCcccccccc
Confidence 567777778889986 999999999999999999999999999 999999999888765210 0 0 0
Q ss_pred CCCceEEEEEEEeee-ccCCcEEEEEEEEEE--eecCCCC--EEEEEEEEEecchh-HHHHHHHHHHHHHHHHHHHhcCC
Q 001353 687 EEDKNVELKLRKFEL-QKQHSVVYILVNACT--SRDYKNN--VKGVCFVGQDITHE-KVLMDKFIRLQGDYEAIIQSVNP 760 (1093)
Q Consensus 687 ~~~~~~e~~l~~~~~-~kdG~~~~v~v~~~p--i~d~~g~--v~gv~~v~~DITer-K~aEe~L~~se~~lr~i~~~~~~ 760 (1093)
...+.+.++++.... .+..+..++.+.... +.+.+|. ....+.++.-+..- +...+ ..+. ..
T Consensus 99 ~~~rsF~CRmr~~~~~~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~lv~~a~~~~s~~~~p~~-----------~~~~-~~ 166 (309)
T 3gdi_A 99 MEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAESQLCCLLLAERVHSGYEAPRI-----------PPEK-RI 166 (309)
T ss_dssp --CCCEEEEECCCC----CCCCEEEEEEEEEEECC--------EEEEEEEEECCCTTSSSCC-----------CGGG-CE
T ss_pred CCceeEEEEEEccccCCCccceEEEEEEeeeccccCCCCCcCccEEEEEEEecCCCccCCCc-----------CCCC-ce
Confidence 012344444442110 111233344444332 3344454 23333333333210 00000 0000 11
Q ss_pred CCCceEEecCCCcEeechhhhHHHhCCCcchhcc----------------------c-cCCCccc-eeeEEEccCCcEEE
Q 001353 761 LIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------------------I-TGQGTEN-FPFGFFNRQGQFVE 816 (1093)
Q Consensus 761 li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG----------------------~-~~~~~~~-~e~~~~~kdG~~~~ 816 (1093)
-+...+.+|+++++|+++..++||.++|++| . .++.... .+++++++||.++|
T Consensus 167 ---Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 243 (309)
T 3gdi_A 167 ---FTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYIT 243 (309)
T ss_dssp ---EEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEE
T ss_pred ---EEEEecCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEE
Confidence 4677899999999999999999999999999 1 1233333 58999999999999
Q ss_pred EEEEEeEeecC-CCcEEEEEEEEeeccc
Q 001353 817 VALTASRRTDA-EGKVIGCFCFMQILVP 843 (1093)
Q Consensus 817 v~~~~~~i~d~-~G~v~g~i~~~~DITe 843 (1093)
++.....+.|. .+++..++|.-+.++.
T Consensus 244 vet~~~~~~np~s~~~e~ii~~h~v~~g 271 (309)
T 3gdi_A 244 LDTSWSSFINPWSRKISFIIGRHKVRVG 271 (309)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCcccEEEEEEEEccC
Confidence 99999998886 6788888888776653
No 91
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.10 E-value=1.7e-09 Score=110.83 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=115.7
Q ss_pred HHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCC-------CCccCCccCCCC
Q 001353 214 KLAVSAISR-LQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL-------EPYLGIHFPAND 285 (1093)
Q Consensus 214 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~-------~~~lg~~~p~~d 285 (1093)
.++.++.+. +.+ +.|++++++.+++.+++++|+||+.||-+++++..-+..-...... ...-..++|...
T Consensus 13 ~~Ll~~~~~i~~~--~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (189)
T 2zmf_A 13 DFLLDVSKTYFDN--IVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSIEK 90 (189)
T ss_dssp HHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEETTS
T ss_pred HHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCCCc
Confidence 334455544 345 5799999999999999999999999999999987655443322211 122233444332
Q ss_pred chHHHHHhHhcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeE
Q 001353 286 IPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWG 365 (1093)
Q Consensus 286 ip~~~r~l~~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWG 365 (1093)
.-....+..++...|+|+...|.. +.+......+++++.|++||+.+| ++||
T Consensus 91 --~~~~~v~~~~~~~~i~d~~~~~~~----------------------~~~~~~~~~~~~~s~l~vPl~~~~----~~~G 142 (189)
T 2zmf_A 91 --GIAGQVARTGEVLNIPDAYADPRF----------------------NREVDLYTGYTTRNILCMPIVSRG----SVIG 142 (189)
T ss_dssp --HHHHHHHHHCCCEEESCGGGSTTC----------------------CTHHHHHHCCCCCCEEEEEEEETT----EEEE
T ss_pred --cHHHHHHHhCCeEEEecccccccc----------------------cccchhhcccccceEEEeeecccC----ceee
Confidence 223455677888888888766553 456677888999999999999988 9999
Q ss_pred EEEeecC-CCCCCCchHHHHHHHHHHHHHHHHHH
Q 001353 366 LVVCHHT-SPRYIPFPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 366 l~~~h~~-~p~~~~~~~r~~~~~l~~~~~~~l~~ 398 (1093)
.|..+++ .|+.|+..+..+++.+|.++++.|..
T Consensus 143 vl~l~~~~~~~~f~~~d~~ll~~lA~q~a~Ai~n 176 (189)
T 2zmf_A 143 VVQMVNKISGSAFSKTDENNFKMFAVFCALALHC 176 (189)
T ss_dssp EEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9987665 58999999999999999999999854
No 92
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.09 E-value=5.3e-10 Score=119.24 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEE
Q 001353 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLR 697 (1093)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~ 697 (1093)
+++..++++++++|+++|.+|+|+++|+++++++||+.+|++|++.. .+.++.........+...+..+.....++..
T Consensus 111 ~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 188 (227)
T 3ewk_A 111 ARLKQAMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPS-ILDSPLADQETLAAMQEALQAGQPWSGRLLN- 188 (227)
T ss_dssp HHHHHHHHTCCSEEEEECTTSCEEEECHHHHHHHTCCTHHHHSSCGG-GGBCTTSCHHHHHHHHHHHHHTCCEECCEEE-
T ss_pred HHHHHHHhcCcCeEEEEcCCCcEEEEchHHHHHhCCCHHHHcCCChh-hccCCCCCHHHHHHHHHHHHcCCceeEEEEE-
Confidence 45677899999999999999999999999999999999999999988 7777766666666666666555554444433
Q ss_pred EeeeccCCc------EEEEEEEEEEeecCCCCEEEEEEEEEe
Q 001353 698 KFELQKQHS------VVYILVNACTSRDYKNNVKGVCFVGQD 733 (1093)
Q Consensus 698 ~~~~~kdG~------~~~v~v~~~pi~d~~g~v~gv~~v~~D 733 (1093)
.+++|. .+|+.++..|++|.+|++.|++++++|
T Consensus 189 ---~~k~G~~~~dg~~~~~~~~~~pi~d~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 189 ---RRRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp ---EEECCSSSSCEEEEEEEEEEEEEECSSSCEEEEEEEEEC
T ss_pred ---ECCCCCcCcccceEEEEEEEEEEECCCCCEEEEEEEecC
Confidence 345664 899999999999999999999999988
No 93
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.08 E-value=8.2e-10 Score=104.86 Aligned_cols=114 Identities=20% Similarity=0.259 Sum_probs=92.5
Q ss_pred HHHHHHhcCccEEEECC---CCcEEEecHHHHHhcCCCccccCCCCc-cccccccccHHHHHHHHHHHHcCCCCceEEEE
Q 001353 620 MVRLIETATAPIFGVDS---SGTINGWNAKVAELTGLPASEAMGKSL-IDEVVHEESQGAVENLICRALLGEEDKNVELK 695 (1093)
Q Consensus 620 l~~lie~~~~~I~~~D~---dG~I~~~N~~~~~llG~~~eeliG~~~-~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~ 695 (1093)
+...+++++++++++|. +|+|+++|+++++++|++.++++|+++ ...+.+++........+...+..+.....++.
T Consensus 21 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T 2l0w_A 21 IIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIA 100 (138)
T ss_dssp HHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEE
Confidence 45667889999999999 999999999999999999999999983 42566666555555566666665554443433
Q ss_pred EEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchh
Q 001353 696 LRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737 (1093)
Q Consensus 696 l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITer 737 (1093)
. .+++|..+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 101 ~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 101 F----YRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp E----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred E----ECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 3 4678999999999999999999999999999999974
No 94
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.08 E-value=4.2e-10 Score=106.45 Aligned_cols=93 Identities=19% Similarity=0.288 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcccc---------------------CCCc
Q 001353 742 DKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGIT---------------------GQGT 800 (1093)
Q Consensus 742 e~L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG~~---------------------~~~~ 800 (1093)
++|++++++|+.+++++++ +|+++|.+|+++++|+++++++||+++|++|.. ....
T Consensus 4 ~~l~~se~~~~~l~e~~~d---~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (117)
T 2r78_A 4 ENLYFQSNAYRALFEHAID---GIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEP 80 (117)
T ss_dssp CSHHHHHHHHHHHHHHCSS---EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHHHTTCC
T ss_pred hHHHHhHHHHHHHHhcCCc---eEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHHHHHcCCc
Confidence 3577889999999999998 899999999999999999999999999999911 1112
Q ss_pred cceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecc
Q 001353 801 ENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 842 (1093)
Q Consensus 801 ~~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DIT 842 (1093)
...+..+.++||+.+|+.++..++. +|. ++++++|||
T Consensus 81 ~~~e~~~~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 81 LREERTVWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred EEEEEEEEecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 3457788899999999999999875 565 578899997
No 95
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.05 E-value=1.3e-09 Score=103.72 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcC------------CCccccCCCCccccccccccHHHHHHHHHHHHc
Q 001353 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTG------------LPASEAMGKSLIDEVVHEESQGAVENLICRALL 685 (1093)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG------------~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~ 685 (1093)
.+++.+++++++||+++|.+|+|+++|++++++|| +++++++|+++. ++++.. ......+.. ..
T Consensus 5 ~rl~~il~~~~~gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~-~~~~~~--~~~~~~~~~-~~ 80 (121)
T 4hi4_A 5 ARIASALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANID-VFHKNP--AHQRHLLAN-LT 80 (121)
T ss_dssp HHHHHHHTTSSSEEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGG-GGCSSH--HHHHHHHHH-CS
T ss_pred HHHHHHHhcCCccEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHH-HhcCCH--HHHHHHHhC-cC
Confidence 57899999999999999999999999999999996 899999999988 666432 222222222 21
Q ss_pred CCCCceEEEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchh
Q 001353 686 GEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737 (1093)
Q Consensus 686 g~~~~~~e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITer 737 (1093)
.. .+..+. .+| +++.++..|++|.+|++.|++++++|||++
T Consensus 81 --~~--~~~~~~-----~~~--~~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 81 --GV--HKAELN-----LGG--RRFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp --SC--EEEEEE-----ETT--EEEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred --CC--cEEEEE-----ECC--EEEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 11 222222 133 356889999999999999999999999984
No 96
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.04 E-value=3.7e-10 Score=106.12 Aligned_cols=84 Identities=10% Similarity=0.128 Sum_probs=74.8
Q ss_pred ceEEecCCCcEeechhhhHHHhCCCcchhcc----------------------ccCCCccceeeEEEccCCcEEEEEEEE
Q 001353 764 PIFASDENACCSEWNAAMEKVTGWMRHEVIG----------------------ITGQGTENFPFGFFNRQGQFVEVALTA 821 (1093)
Q Consensus 764 ~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG----------------------~~~~~~~~~e~~~~~kdG~~~~v~~~~ 821 (1093)
.|+..|.+|+++++|+++++++||+++|++| ...+.....++++.++||+++|+..+.
T Consensus 11 ~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~~~ 90 (117)
T 3f1p_A 11 FLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQG 90 (117)
T ss_dssp EEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEEEEEEee
Confidence 6889999999999999999999999999999 122334567899999999999999999
Q ss_pred eEeecC-CCcEEEEEEEEeecccCcHH
Q 001353 822 SRRTDA-EGKVIGCFCFMQILVPDLQP 847 (1093)
Q Consensus 822 ~~i~d~-~G~v~g~i~~~~DITe~k~~ 847 (1093)
.|+.|. +|.+.+++++.+|||+++++
T Consensus 91 ~~~~d~~~g~~~~iv~~~~DITer~~~ 117 (117)
T 3f1p_A 91 TVIYNPRNLQPQCIMCVNYVLSEIEKN 117 (117)
T ss_dssp EEEEETTTTEEEEEEEEEEECSCCBC-
T ss_pred EEEECCCCCCceEEEEEeeeccccccC
Confidence 999998 89999999999999998863
No 97
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.04 E-value=5.4e-10 Score=108.49 Aligned_cols=115 Identities=16% Similarity=0.160 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCC---ceEEE
Q 001353 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED---KNVEL 694 (1093)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~---~~~e~ 694 (1093)
+.+..++++++++|+++|.+|+|+++|++++++|||+.++++|+++. +++++++...+...+......+.. .....
T Consensus 7 ~~l~~i~~~~~d~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWR-NFLTEHHQARYDNLLSHDVQLGTNCGQPVQHP 85 (129)
T ss_dssp HHHHHHHTTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGG-GGBCTTCCGGGGCTTC----------CCSCEE
T ss_pred HHHHHHHhcCCceEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHH-HHcChHhHHHHHHHHHHHHhcCcccccccCCC
Confidence 45788999999999999999999999999999999999999999998 888887655443333332222211 00011
Q ss_pred EEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecch
Q 001353 695 KLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736 (1093)
Q Consensus 695 ~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITe 736 (1093)
.......++||+.+|+.++..|+.+ +... ++++++|...
T Consensus 86 ~~E~~~~rkdG~~~~velsis~i~~--~~~~-~v~~~~~~~~ 124 (129)
T 3mfx_A 86 AQETTLICASGKAKDVELSISYIPG--HEPM-FVMVMHDLEH 124 (129)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEECS--SSCE-EEEEEEEC--
T ss_pred ceEEEEEcCCCCEEEEEEEEEEecC--CCcE-EEEEEechhh
Confidence 2223345789999999999999983 3333 5667788753
No 98
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.03 E-value=2.9e-10 Score=107.99 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=77.5
Q ss_pred HhcCCCCCceEEecC---CCcEeechhhhHHHhCCCcchhcc----------------------ccCCCccceeeEEEcc
Q 001353 756 QSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIG----------------------ITGQGTENFPFGFFNR 810 (1093)
Q Consensus 756 ~~~~~li~~I~~~D~---~g~i~~~N~a~~~l~G~~~eEliG----------------------~~~~~~~~~e~~~~~k 810 (1093)
+++++ +|+++|. +|+++++|+++++++||+.++++| .........++.+.++
T Consensus 4 ~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 80 (128)
T 3t50_A 4 EFTLM---PMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKK 80 (128)
T ss_dssp CCCSS---CEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECT
T ss_pred ccCcc---cEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcC
Confidence 44444 8999999 999999999999999999999998 1233445667888999
Q ss_pred CCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHHHHH
Q 001353 811 QGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEA 851 (1093)
Q Consensus 811 dG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~el 851 (1093)
+|..+|+.++..|+.+.+|.+.+++++++|||++++++.+.
T Consensus 81 ~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~ 121 (128)
T 3t50_A 81 SGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSL 121 (128)
T ss_dssp TCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-----
T ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhh
Confidence 99999999999999999999999999999999988877653
No 99
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.03 E-value=7.4e-11 Score=111.92 Aligned_cols=114 Identities=15% Similarity=0.123 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCc
Q 001353 611 DELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDK 690 (1093)
Q Consensus 611 ~eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~ 690 (1093)
..+.......+.+++++|++|+++|.+|+|+++|+++++++|++.++++|+++. +++++.....+...+..++..+...
T Consensus 5 ~~~~~~~~~~~~il~~~~~~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (118)
T 3fg8_A 5 HHHHHHSSGRENLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVT-EVLPETQGSYFDALCRKVLATGREQ 83 (118)
T ss_dssp --------CCCCSSSCTTCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHH-HHCGGGTTSHHHHHHHHHHHHCCCE
T ss_pred cccccccchHHHHHhhCCceEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHH-HHcCccchHHHHHHHHHHHHcCCce
Confidence 445566667788999999999999999999999999999999999999999998 8887766666777777777665553
Q ss_pred eEEEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchh
Q 001353 691 NVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737 (1093)
Q Consensus 691 ~~e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITer 737 (1093)
..+++. . ..+| +|+.++..|+.+ |++++++|||++
T Consensus 84 ~~~~~~--~--~~~g--~~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 84 QTRVDS--L--YSPG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp EEEEEC--S--SSTT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred EEEEEE--E--cCCC--eEEEEEEEEcCC------cEEEEEEeccCC
Confidence 332222 1 1244 678888888754 478889999985
No 100
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.03 E-value=4.4e-10 Score=111.70 Aligned_cols=108 Identities=13% Similarity=0.104 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCCCCCceEEecCCC---cEeechhhhHHHhCCCcchhcc----------------------ccCCCccc
Q 001353 748 QGDYEAIIQSVNPLIPPIFASDENA---CCSEWNAAMEKVTGWMRHEVIG----------------------ITGQGTEN 802 (1093)
Q Consensus 748 e~~lr~i~~~~~~li~~I~~~D~~g---~i~~~N~a~~~l~G~~~eEliG----------------------~~~~~~~~ 802 (1093)
++.++.++++++. +|+++|.+| +++++|+++.+++|++.++++| ...+....
T Consensus 24 ~~~~~~i~~~~~~---~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (162)
T 3sw1_A 24 AQLLQSMVDASND---GIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCR 100 (162)
T ss_dssp HHHHHHHHHTCSS---EEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHhhccC---cEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCc
Confidence 4568889999998 899999999 9999999999999999999988 11223345
Q ss_pred eeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHHHHHHhHHHHH
Q 001353 803 FPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMD 858 (1093)
Q Consensus 803 ~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~elq~~~e~~ 858 (1093)
.++.+.+++|+.+|+.++..|+.+.+|.+.+++++++|||++++.+.++++..++.
T Consensus 101 ~~~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~~l 156 (162)
T 3sw1_A 101 EVLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRARP 156 (162)
T ss_dssp EEEEEECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC--
T ss_pred ceEEEECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999998887766554443
No 101
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.02 E-value=2.2e-09 Score=96.99 Aligned_cols=105 Identities=20% Similarity=0.230 Sum_probs=82.8
Q ss_pred ccEEEECC---CCcEEEecHHHHHhcCCCccccCCCC-ccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccC
Q 001353 629 APIFGVDS---SGTINGWNAKVAELTGLPASEAMGKS-LIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQ 704 (1093)
Q Consensus 629 ~~I~~~D~---dG~I~~~N~~~~~llG~~~eeliG~~-~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kd 704 (1093)
.+++++|. +|+|+++|+++++++|++.++++|++ +...+.++.........+...+..+.....++.+ .+++
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 77 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAF----YRKD 77 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE----ECTT
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEE----EcCC
Confidence 57889987 59999999999999999999999998 3424555554444455555556555554444433 4679
Q ss_pred CcEEEEEEEEEEeecCCCCEEEEEEEEEecchh
Q 001353 705 HSVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737 (1093)
Q Consensus 705 G~~~~v~v~~~pi~d~~g~v~gv~~v~~DITer 737 (1093)
|..+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 78 g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 78 GSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp SCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 999999999999999999999999999999975
No 102
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.02 E-value=8.8e-10 Score=102.12 Aligned_cols=98 Identities=13% Similarity=0.227 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc----------------------ccCCCccce
Q 001353 746 RLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------------------ITGQGTENF 803 (1093)
Q Consensus 746 ~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG----------------------~~~~~~~~~ 803 (1093)
++++.++.++++++. +++++|.+|+++++|+++.+++|++.++++| ...+.....
T Consensus 4 ~~~~~~~~~~~~~~~---~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T 3lyx_A 4 DILKQRAKAFDYVFD---AIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTG 80 (124)
T ss_dssp CHHHHHHHGGGTCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEE
T ss_pred hHHHHHHHHHhhcCc---eEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccc
Confidence 355678899999988 8999999999999999999999999999888 122334456
Q ss_pred eeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcH
Q 001353 804 PFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQ 846 (1093)
Q Consensus 804 e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~ 846 (1093)
++.+..++|+.+|+.++..|+.+.+|.+.|++++++|||++++
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 81 EIRMLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred eEEEEccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 7788899999999999999999999999999999999999875
No 103
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.01 E-value=5.5e-10 Score=104.06 Aligned_cols=101 Identities=9% Similarity=0.054 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceEEecCC-CcEeechhhhHHHhCCCcchhcc-----------------------
Q 001353 739 VLMDKFIRLQGDYEAIIQSVNPLIPPIFASDEN-ACCSEWNAAMEKVTGWMRHEVIG----------------------- 794 (1093)
Q Consensus 739 ~aEe~L~~se~~lr~i~~~~~~li~~I~~~D~~-g~i~~~N~a~~~l~G~~~eEliG----------------------- 794 (1093)
+++++|++++++|+.++++++. ++|.+|.+ |+++++|+++.+++|++++++.|
T Consensus 1 ~~e~~l~~~~~~~~~~~~~~~~---~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (125)
T 3eeh_A 1 RAKQQAAKSERRVRELTEATND---ILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS 77 (125)
T ss_dssp ---------CHHHHHHHSCCCC---EEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCCc---eEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH
Confidence 3577888999999999999998 89999999 99999999999999999988776
Q ss_pred ccCCCccceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecc
Q 001353 795 ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 842 (1093)
Q Consensus 795 ~~~~~~~~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DIT 842 (1093)
...+.....++++.+++|+.+|+.++..|+.+.+|.+.+++++++|||
T Consensus 78 ~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 78 LMDGESADVECRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp HHTTCCEEEEEEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred HHcCCCccEEEEEEcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 123344567888889999999999999999999999999999999997
No 104
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.01 E-value=1e-09 Score=102.80 Aligned_cols=86 Identities=13% Similarity=0.146 Sum_probs=75.5
Q ss_pred ceEEec-CCCcEeechhhhHHHhCCCcchhcc-----------------------ccCCCccceeeEEEccCCcEEEEEE
Q 001353 764 PIFASD-ENACCSEWNAAMEKVTGWMRHEVIG-----------------------ITGQGTENFPFGFFNRQGQFVEVAL 819 (1093)
Q Consensus 764 ~I~~~D-~~g~i~~~N~a~~~l~G~~~eEliG-----------------------~~~~~~~~~e~~~~~kdG~~~~v~~ 819 (1093)
++|.+| .+|+++++|+++.+++||+++++.+ ..++.....++++.++||+++|+..
T Consensus 5 giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~w~~~ 84 (115)
T 3h9w_A 5 IPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGHYVWIRD 84 (115)
T ss_dssp EEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEE
T ss_pred EEEEEEcCCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCCEEEEEE
Confidence 799999 6888999999999999999999876 2344467789999999999999999
Q ss_pred EEeEeecCCCcEEEEEEEEeecccCcHHHH
Q 001353 820 TASRRTDAEGKVIGCFCFMQILVPDLQPAL 849 (1093)
Q Consensus 820 ~~~~i~d~~G~v~g~i~~~~DITe~k~~e~ 849 (1093)
++.++.|++|++.+++|+..|||++|++|.
T Consensus 85 ~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 85 VVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp EEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred EEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 999999999999999999999999988763
No 105
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.00 E-value=1.5e-09 Score=100.13 Aligned_cols=92 Identities=12% Similarity=0.124 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc---------------------ccCCCccceeeE
Q 001353 748 QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---------------------ITGQGTENFPFG 806 (1093)
Q Consensus 748 e~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG---------------------~~~~~~~~~e~~ 806 (1093)
+++++.+++++++ +|+++|.+|+++++|+++++++|+++++++| ..+......+..
T Consensus 2 e~~~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (114)
T 3luq_A 2 DERLRLFTEHAPA---ALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIFPEIGEEWKSVHRRGLAGEVIRVEEDC 78 (114)
T ss_dssp CHHHHHHHHTCSS---EEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHCTTCCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred hHHHHHHHhcCCc---eEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHHHCCccHHHHHHHHHHHhcCCcceeeeeE
Confidence 4678899999998 8999999999999999999999999999998 122222223337
Q ss_pred EEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecc
Q 001353 807 FFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 842 (1093)
Q Consensus 807 ~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DIT 842 (1093)
+.+++|+.+|+.++..|+.+.+|.+.|++++++|||
T Consensus 79 ~~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 79 FVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 889999999999999999999999999999999997
No 106
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=98.99 E-value=1.7e-09 Score=100.90 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCCCCCceEEec---CCCcEeechhhhHHHhCCCcchhcc----------------------ccCCCc
Q 001353 746 RLQGDYEAIIQSVNPLIPPIFASD---ENACCSEWNAAMEKVTGWMRHEVIG----------------------ITGQGT 800 (1093)
Q Consensus 746 ~se~~lr~i~~~~~~li~~I~~~D---~~g~i~~~N~a~~~l~G~~~eEliG----------------------~~~~~~ 800 (1093)
++++.++.+++++++ +++++| .+|+++++|+++.+++|++.++++| ...+..
T Consensus 3 ~~~~~~~~~~~~~~~---~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (130)
T 2z6d_A 3 RVSQELKTALSTLQQ---TFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKS 79 (130)
T ss_dssp ----CHHHHHHHTTC---EEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHhccc---ceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCc
Confidence 456678899999998 899999 9999999999999999999999988 112233
Q ss_pred cceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHHHH
Q 001353 801 ENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALE 850 (1093)
Q Consensus 801 ~~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~e 850 (1093)
...++...+++|+.+|+.++..|+.+.+|.+.+++++++|||++++.+.+
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 80 YCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC-----
T ss_pred ceeEEEEEcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhcc
Confidence 45566788999999999999999999999999999999999999877643
No 107
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=98.99 E-value=1.1e-09 Score=102.34 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=70.8
Q ss_pred CceEEec---CCCcEeechhhhHHHhCCCcchhccc----------------------cCCCccceeeEEEccCCcEEEE
Q 001353 763 PPIFASD---ENACCSEWNAAMEKVTGWMRHEVIGI----------------------TGQGTENFPFGFFNRQGQFVEV 817 (1093)
Q Consensus 763 ~~I~~~D---~~g~i~~~N~a~~~l~G~~~eEliG~----------------------~~~~~~~~e~~~~~kdG~~~~v 817 (1093)
.+|++.| .+|+|+++|++|++++||+.+|++|. ..+..+..++..+++||+.+|+
T Consensus 4 ~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~ 83 (109)
T 1n9l_A 4 HTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWN 83 (109)
T ss_dssp CEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEE
T ss_pred cEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEEEE
Confidence 3799999 47999999999999999999999991 1222345577788999999999
Q ss_pred EEEEeEeecCCCcEEEEEEEEeeccc
Q 001353 818 ALTASRRTDAEGKVIGCFCFMQILVP 843 (1093)
Q Consensus 818 ~~~~~~i~d~~G~v~g~i~~~~DITe 843 (1093)
.+++.|+.|++|++.+++++.+|||+
T Consensus 84 ~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 84 LLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 99999999999999999999999996
No 108
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=98.99 E-value=2e-09 Score=103.06 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=81.2
Q ss_pred HHHHHHhcCCCCCceEEecC---CCcEeechhhhHHHhCCCcchhcc----------------------ccCCCccceee
Q 001353 751 YEAIIQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIG----------------------ITGQGTENFPF 805 (1093)
Q Consensus 751 lr~i~~~~~~li~~I~~~D~---~g~i~~~N~a~~~l~G~~~eEliG----------------------~~~~~~~~~e~ 805 (1093)
++.++++++. +++++|. +|+++++|+++.+++|++.++++| ...+.....++
T Consensus 4 l~~~~~~~~~---~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (146)
T 2v0u_A 4 LATTLERIEK---NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQL 80 (146)
T ss_dssp CCCTGGGSSS---CEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhcCCC---cEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEE
Confidence 3456777776 8999999 999999999999999999999888 12233355677
Q ss_pred EEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHH
Q 001353 806 GFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQP 847 (1093)
Q Consensus 806 ~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~ 847 (1093)
.+..++|..+|+.++..|+.+.+|.+.+++++++|||++++.
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~ 122 (146)
T 2v0u_A 81 INYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRD 122 (146)
T ss_dssp EEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCH
T ss_pred EEEecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHHH
Confidence 888999999999999999999999999999999999999883
No 109
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=98.98 E-value=1.1e-09 Score=108.75 Aligned_cols=104 Identities=13% Similarity=0.173 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEec-CCCcEeechhhhHHHhCCCcchhcc----------------------c-cCCCc
Q 001353 745 IRLQGDYEAIIQSVNPLIPPIFASD-ENACCSEWNAAMEKVTGWMRHEVIG----------------------I-TGQGT 800 (1093)
Q Consensus 745 ~~se~~lr~i~~~~~~li~~I~~~D-~~g~i~~~N~a~~~l~G~~~eEliG----------------------~-~~~~~ 800 (1093)
...+++|+.++++++. +|+++| .+|+++++|+++++++|++ +++| . .+...
T Consensus 13 ~~~~~~~~~~~~~~~~---~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 87 (158)
T 3k3c_A 13 VGAAEDVRRIFEHIPA---ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQ 87 (158)
T ss_dssp TCCHHHHHHHHHHCSS---EEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHhcCCc---eEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcc
Confidence 3445679999999998 899999 9999999999999999999 7777 1 11111
Q ss_pred cceeeEE--Ecc-C-CcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHHHHHHh
Q 001353 801 ENFPFGF--FNR-Q-GQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQG 853 (1093)
Q Consensus 801 ~~~e~~~--~~k-d-G~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~elq~ 853 (1093)
...+..+ ... + |..+|+.++..|+.+.+|.+.|++++++|||++++.+.++++
T Consensus 88 ~~~~~~~~~~~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~ 144 (158)
T 3k3c_A 88 SGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEA 144 (158)
T ss_dssp EEEEEEEEEESSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHH
T ss_pred cccceeEEeccCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHH
Confidence 1122222 222 2 778999999999999999999999999999999888766543
No 110
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.98 E-value=4.6e-08 Score=113.46 Aligned_cols=318 Identities=12% Similarity=0.104 Sum_probs=186.3
Q ss_pred HHHHHHHHhhcCCCCCHHH----HHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHH
Q 001353 215 LAVSAISRLQALPGGDIGL----LCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAA 290 (1093)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~ 290 (1093)
.+.+++..+.+ .+++. +++.+++.+++++++||+.||.++++. ++....+....-....+.++|... .-+
T Consensus 10 ~l~~~~~~l~~---~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~-~~l~~~~~~g~~~~~~~~~~~~~~--g~~ 83 (398)
T 1ykd_A 10 IVHQTLSMLDS---HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEK-QELWSIVAAGEGDRSLEIRIPADK--GIA 83 (398)
T ss_dssp HHHHHHHHHTT---SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTT-TEEEEEEECCGGGCCCCCEEETTS--HHH
T ss_pred HHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCC-CeEEEEeecCCCCccceeecCCCC--chh
Confidence 33445555543 46655 556666669999999999999999885 455555443322334566777542 234
Q ss_pred HHhHhcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEE-cCCCCcceeEEEEe
Q 001353 291 RFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVII-NSKDSMKLWGLVVC 369 (1093)
Q Consensus 291 r~l~~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~-~~~~~~~LWGl~~~ 369 (1093)
...+..++.-.|+|+...+.. .--+.+......+++++.|++||+. +| ++||.|.+
T Consensus 84 g~v~~~~~~v~i~d~~~~~~~-------------------~~~~~~~~~~~~~~~~s~l~vPl~~~~g----~~iGvl~l 140 (398)
T 1ykd_A 84 GEVATFKQVVNIPFDFYHDPR-------------------SIFAQKQEKITGYRTYTMLALPLLSEQG----RLVAVVQL 140 (398)
T ss_dssp HHHHHHCCCEEECSCGGGSGG-------------------GHHHHHHHHHHCCCCSCEEEEEEECSSC----CEEEEEEE
T ss_pred hhhhccCcEEeccchhcccch-------------------hhcccccCcccCcCCceEEEEEEECCCC----CEEEEEEE
Confidence 455667777788887654110 0013445555678899999999996 56 99999999
Q ss_pred ecC---------------CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc-cCCCccccc
Q 001353 370 HHT---------------SPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQL-AEKNILRTQVLLCDMLL-RDAPFSIVT 432 (1093)
Q Consensus 370 h~~---------------~p~~~~~~~r~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~ 432 (1093)
++. .|+.|+.....+++.++..++..|......+... ..++..........+.. ......+..
T Consensus 141 ~~~~~~~~~~~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~~~~l~~L~~~~~~l~~~~~dl~~~l~ 220 (398)
T 1ykd_A 141 LNKLKPYSPPDALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQKQRAAAAMMKAVKSLSQSSLDLEDTLK 220 (398)
T ss_dssp EEEBCSCCCTTCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred eccCCcccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 988 7999999999999999999999886432111111 11111122222222222 122222222
Q ss_pred C-CcchhhhccCCEEEEEEC----CeEEEecC----------CCCHHHHHHHHHHHHhccCCCceeee-ccccccCCCCc
Q 001353 433 Q-SPSIMDLVKCDGAALYYG----GRCWLVGV----------TPTESQLKDIAWWLLNNHGDCTGLST-DSLAEAGYPGA 496 (1093)
Q Consensus 433 ~-~~~~~~l~~a~g~al~~~----~~~~~~G~----------~p~~~~~~~l~~~l~~~~~~~~~~~t-~~l~~~~~p~~ 496 (1093)
. ...+..+++||+++|+.- +.++.... .|.. ..+..|...... .++.. |.-.+ |..
T Consensus 221 ~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~--~~~i~~d~~~~---~~~ 292 (398)
T 1ykd_A 221 RVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIG---KGFAGIVAASGQ--KLNIPFDLYDH---PDS 292 (398)
T ss_dssp HHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETT---SHHHHHHHHHCC--CEEECSCGGGS---TTC
T ss_pred HHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCC---CchhhHHhccCC--eEEeccccccC---ccc
Confidence 2 245777899998888542 23443322 1111 235556554422 23333 32221 222
Q ss_pred ccc-------ccccccEEEEeeC-CC-cE---EEEeecCcCcEEEecCCCCCCccCCCCCccccCchhHHHHHHhhcccc
Q 001353 497 ALL-------GQAVCGMATARIT-SK-DF---LFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSF 564 (1093)
Q Consensus 497 ~~~-------~~~~~G~l~~~~~-~~-~~---l~wfR~e~~~~v~W~G~p~~~~~~~~~~~l~Pr~SF~~w~e~v~g~s~ 564 (1093)
... +-....++++||- .+ .. |..++... .| -.|+.+++.|.+..++...
T Consensus 293 ~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~-----------------~~--~~~~~~~~~~~~~~~~~~~ 353 (398)
T 1ykd_A 293 ATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKKK-----------------TG--EFPPYNPETWPIAPECFQA 353 (398)
T ss_dssp HHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEECC-----------------SS--CCCCCCGGGTTCCCGGGCC
T ss_pred CcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecCC-----------------cc--cccccccccccccccccCC
Confidence 111 1225668999986 33 21 22111110 01 1246677889998888899
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHh
Q 001353 565 PWEVSEINAIHSLQIVMRDSFQEM 588 (1093)
Q Consensus 565 pW~~~El~aa~sL~liL~~sl~~l 588 (1093)
+|++.++..+..+...+.-++...
T Consensus 354 ~f~~~d~~ll~~la~~~a~al~na 377 (398)
T 1ykd_A 354 SFDRNDEEFMEAFNIQAGVALQNA 377 (398)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888866555555443
No 111
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=98.98 E-value=4.4e-10 Score=106.19 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=75.3
Q ss_pred HHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhccc-----------------------cCCCccceeeE
Q 001353 750 DYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGI-----------------------TGQGTENFPFG 806 (1093)
Q Consensus 750 ~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG~-----------------------~~~~~~~~e~~ 806 (1093)
.|+.++++++. +|+ +|.+|+++++|+++++++||++++++|. ..+.....++.
T Consensus 4 ~~~~~~~~~~~---~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
T 3mqq_A 4 DYKTAFHLAPI---GLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
T ss_dssp CHHHHHHHCSS---EEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred hHHHHHhcCCc---eEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEE
Confidence 47889999998 675 5789999999999999999999999991 11233456778
Q ss_pred EEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHH
Q 001353 807 FFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQP 847 (1093)
Q Consensus 807 ~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~ 847 (1093)
+.++||+.+|+.++..++ +.+|...+++++++|||++|+.
T Consensus 80 ~~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 80 MKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp EECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred EEeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 899999999999999998 6667677899999999998764
No 112
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=98.98 E-value=2.4e-08 Score=101.21 Aligned_cols=159 Identities=12% Similarity=0.075 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEE-EecCCCC-CCccCCccCCCCchHHH
Q 001353 213 QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVS-EIRRSDL-EPYLGIHFPANDIPQAA 290 (1093)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vva-E~~~~~~-~~~lg~~~p~~dip~~~ 290 (1093)
.+++.++...|.+ +.+++++++.+++.+++++|+||+.||-+++++..-.+. +...... ....+..+|..+= -.
T Consensus 5 l~ll~~i~~~l~~--~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 80 (177)
T 3k2n_A 5 LKLMQYIGDAIGT--IRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGT--WL 80 (177)
T ss_dssp HHHHHHHHHHHTT--CCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTS--GG
T ss_pred HHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCcccc--HH
Confidence 4566777788887 779999999999999999999999999999988765553 2211111 2233334443221 12
Q ss_pred HHhHhcCCeEEEecCCC-CCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEe
Q 001353 291 RFLFKQNRVRMICDCHA-IPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVC 369 (1093)
Q Consensus 291 r~l~~~~~~r~i~d~~~-~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~ 369 (1093)
...+..+...++ |+.. .+.. +. .+++..+.+...|++|.|++||+.+| +++|.|..
T Consensus 81 ~~v~~~~~~~~~-d~~~~~~~~--~~----------------~~~~~~~~~~~~~~~s~l~vPL~~~~----~~iGvL~l 137 (177)
T 3k2n_A 81 EGHLDDRTVTVA-SIARDIPSF--GA----------------DGAPLLWTLHELGMRQIVLSPLRSGG----RVIGFLSF 137 (177)
T ss_dssp GGGTTCCSCEEE-ETTTTCTTT--TT----------------TTCHHHHHHHHHTCCEEEEEEEEETT----EEEEEEEE
T ss_pred HHHhccCCceEe-chhhccccc--CC----------------cchhHHHHHHHcCceEEEEEEEEECC----EEEEEEEE
Confidence 344555666665 7654 2221 00 01244467889999999999999998 99999999
Q ss_pred ecCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 001353 370 HHTSPRYIPFPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 370 h~~~p~~~~~~~r~~~~~l~~~~~~~l~~ 398 (1093)
+++.|+.|+..++.+++.++.++++.|..
T Consensus 138 ~~~~~~~f~~~d~~ll~~lA~~~a~Ai~n 166 (177)
T 3k2n_A 138 VSAEEKLWSDGDKSLLSGVSSSIAIAVSN 166 (177)
T ss_dssp EESSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999854
No 113
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=98.97 E-value=2.2e-09 Score=99.02 Aligned_cols=88 Identities=13% Similarity=0.095 Sum_probs=76.0
Q ss_pred HHhcCCCCCceEEecC---CCcEeechhhhHHHhCCCcchhcc----------------------ccCCCccceeeEEEc
Q 001353 755 IQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIG----------------------ITGQGTENFPFGFFN 809 (1093)
Q Consensus 755 ~~~~~~li~~I~~~D~---~g~i~~~N~a~~~l~G~~~eEliG----------------------~~~~~~~~~e~~~~~ 809 (1093)
++++++ +|+++|. +|+++++|+++++++||++++++| ...+.....++.+.+
T Consensus 3 l~~~~~---~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (115)
T 4eet_B 3 PEFIEK---NFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYT 79 (115)
T ss_dssp --CCCC---SEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred cccCCC---cEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEec
Confidence 455565 8999999 999999999999999999999988 223344556778889
Q ss_pred cCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCc
Q 001353 810 RQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDL 845 (1093)
Q Consensus 810 kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k 845 (1093)
++|+.+|+.++..|+.+.+|.+.+++++++|||+++
T Consensus 80 ~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 80 KSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp TTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence 999999999999999999999999999999999974
No 114
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=98.97 E-value=1.4e-09 Score=101.37 Aligned_cols=93 Identities=6% Similarity=0.056 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc------------------------ccCCCccc
Q 001353 747 LQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------------------ITGQGTEN 802 (1093)
Q Consensus 747 se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG------------------------~~~~~~~~ 802 (1093)
++++|+.++++++. ++|.+|.+|+++++|+++.+++||+++++.+ ...+....
T Consensus 2 s~~~~~~l~~~~~~---~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~ 78 (118)
T 3icy_A 2 NAEELQALVDNIPA---AIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLT 78 (118)
T ss_dssp HHHHHHHHHTTCCC---CCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEE
T ss_pred cHHHHHHHHhcCCc---eEEEEEcCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCce
Confidence 46789999999998 7999999999999999999999999988766 23444667
Q ss_pred eeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecc
Q 001353 803 FPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 842 (1093)
Q Consensus 803 ~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DIT 842 (1093)
.++++.+++|+.+|+.....|+.+.+|.+.+++++++|||
T Consensus 79 ~e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 79 LVYRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 8889999999999999999999999999999999999997
No 115
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=98.96 E-value=2.3e-09 Score=101.16 Aligned_cols=88 Identities=17% Similarity=0.156 Sum_probs=63.8
Q ss_pred CceEEecCCCcEeechhhhHHHhCCCcchhcccc------C----------------CC----ccceeeEEEccCCcEEE
Q 001353 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIGIT------G----------------QG----TENFPFGFFNRQGQFVE 816 (1093)
Q Consensus 763 ~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG~~------~----------------~~----~~~~e~~~~~kdG~~~~ 816 (1093)
.+|+++|.+|+|++||+++++++||+++|++|.. . .. ....++...++||+.+|
T Consensus 4 d~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~ 83 (119)
T 2vv6_A 4 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGTTFP 83 (119)
T ss_dssp CEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSCEEE
T ss_pred ceEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCCCCEEE
Confidence 4899999999999999999999999999999911 0 00 02235677899999999
Q ss_pred EEEEEeEeecCCCcEEEEEEEEeecccCcHHHHHHH
Q 001353 817 VALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQ 852 (1093)
Q Consensus 817 v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~elq 852 (1093)
+.+++.++.+.++ .+++++++|||++++.+.+++
T Consensus 84 ~~~~~~~~~~~~~--~~~~~~~~DITerk~~e~~l~ 117 (119)
T 2vv6_A 84 MHLSIGEMQSGGE--PYFTGFVRDLTEHQQTQARLQ 117 (119)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEECC----------
T ss_pred EEEEEEEEEECCe--EEEEEEEEEcHHHHHHHHHHH
Confidence 9999999986433 468999999999998886654
No 116
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=98.95 E-value=1.2e-08 Score=102.23 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=117.6
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCC
Q 001353 219 AISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNR 298 (1093)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~ 298 (1093)
+...+.+ +.+++++++.+++.+++++++||+.||-++++...-.+.-+..+.-...-+..||-.+=..-....+..++
T Consensus 7 i~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (169)
T 3oov_A 7 ISSRIQK--SIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDRQ 84 (169)
T ss_dssp HHHHHHH--CCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHTC
T ss_pred HHHHHhh--hcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcCC
Confidence 3445555 67999999999999999999999999999988765555444454444455667765433455667778888
Q ss_pred eEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCC-CC
Q 001353 299 VRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPR-YI 377 (1093)
Q Consensus 299 ~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~-~~ 377 (1093)
..+|.|+...+-..-+.+ ..+++...++++.+++||+.+| +++|.|..++..++ .|
T Consensus 85 ~~~i~d~~~~~~~~~~~~-------------------~~~~~~~~~~~s~l~vPl~~~~----~~iGvl~~~~~~~~~~f 141 (169)
T 3oov_A 85 VYMIDDVSAYPTDFRLQS-------------------PYDAIRALRSKSFVICPIVVKG----EAIGVFAVDNRSSRRSL 141 (169)
T ss_dssp CEEESCGGGSCGGGSCCT-------------------TGGGCGGGCCSSEEEEEEEETT----EEEEEEEEECTTSSSCC
T ss_pred CEEeccccchhhhhhccc-------------------cHHHHHhcCcCcEEEEEEEeCC----cEEEEEEEEccccCCCC
Confidence 888988876554310000 0234567899999999999988 99999999998764 59
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 001353 378 PFPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 378 ~~~~r~~~~~l~~~~~~~l~~ 398 (1093)
+.....+++.++.+++..|..
T Consensus 142 ~~~d~~~l~~~a~~~a~ai~n 162 (169)
T 3oov_A 142 NDTDVDTIKLFADQASSAIVR 162 (169)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998854
No 117
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=98.95 E-value=1.3e-09 Score=108.13 Aligned_cols=121 Identities=21% Similarity=0.201 Sum_probs=72.6
Q ss_pred EEEEEecchhHHHHHHHHHHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhccc------------
Q 001353 728 CFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGI------------ 795 (1093)
Q Consensus 728 ~~v~~DITerK~aEe~L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG~------------ 795 (1093)
.-+-+|++..++..+++++.+..++.+++++++ +|+++|.+|+++++|+++.+++|++.++++|.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~ 95 (167)
T 1v9y_A 19 SHMRQDAEVIMKLTDADNAADGIFFPALEQNMM---GAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRP 95 (167)
T ss_dssp ---------------------CCHHHHHHTCSS---EEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTT
T ss_pred HHHHhhHHHHHHHHHHHhhhhHHHHHHHHhCCC---CEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccc
Confidence 344578889999999999999999999999998 89999999999999999999999999999880
Q ss_pred ----------cCCCc----cceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHHHHHHh
Q 001353 796 ----------TGQGT----ENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQG 853 (1093)
Q Consensus 796 ----------~~~~~----~~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~elq~ 853 (1093)
.+... ...++.+..++|..+|+.++..|+ +.+|.+. ++++++|||++++.+.++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~~-~~~~~~DiT~~~~~e~~l~~ 165 (167)
T 1v9y_A 96 AHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKVY-YLALVRDASVEMAQKEQTRQ 165 (167)
T ss_dssp THHHHHHHHHC----------CEEEEECTTSCEEEEEEEEEEE-EETTEEE-EEEEEEC-------------
T ss_pred hHHHHHHHHhhcCCCcccccceEEEEEcCCCcEEEEEEEEEEE-ecCCCEE-EEEEEecCcHHHHHHHHHHh
Confidence 11111 344677889999999999999998 5667664 99999999999887765443
No 118
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.94 E-value=1.3e-09 Score=125.17 Aligned_cols=109 Identities=8% Similarity=0.024 Sum_probs=96.5
Q ss_pred CccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccCCcE
Q 001353 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707 (1093)
Q Consensus 628 ~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG~~ 707 (1093)
...++..|.+|+++++|+++..++||+++|++|+++. +++||++.+.+...+..++..+.....++++ .+++|+.
T Consensus 251 ~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~-~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~----~~kdG~~ 325 (361)
T 4f3l_A 251 EEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGY-DYYHVDDLENLAKCHEHLMQYGKGKSCYYRF----LTKGQQW 325 (361)
T ss_dssp CEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGG-GGBCHHHHHHHHHHHHHHHHHSEEECCCEEE----ECTTSEE
T ss_pred ceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHH-HeECHHHHHHHHHHHHHHHhCCCcceEEEEE----EecCCCE
Confidence 4567778999999999999999999999999999999 9999999999998888888766544445554 5789999
Q ss_pred EEEEEEEEEeecC-CCCEEEEEEEEEecchhHHHH
Q 001353 708 VYILVNACTSRDY-KNNVKGVCFVGQDITHEKVLM 741 (1093)
Q Consensus 708 ~~v~v~~~pi~d~-~g~v~gv~~v~~DITerK~aE 741 (1093)
+|+..++.|++|. +|++.+++++.+|||+++..+
T Consensus 326 vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 326 IWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred EEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 9999999999998 899999999999999998765
No 119
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.94 E-value=3.2e-09 Score=99.12 Aligned_cols=105 Identities=11% Similarity=0.100 Sum_probs=79.6
Q ss_pred HHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCC-ceEEEEEEEe
Q 001353 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED-KNVELKLRKF 699 (1093)
Q Consensus 621 ~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~-~~~e~~l~~~ 699 (1093)
..++++++++++++|.+|+|+++|++++++||++.++++|+++. +++++... ....+..++..+.. ...++.+
T Consensus 10 ~~il~~~~~~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--- 83 (115)
T 3b33_A 10 SAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLS-QLIQHASL--DLALLTQPLQSGQSITDSDVTF--- 83 (115)
T ss_dssp HHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHH-HHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE---
T ss_pred HHHHhhcCceEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHH-HHhCccch--hhHHHHHHHHcCCcccCCceEE---
Confidence 45899999999999999999999999999999999999999988 66654321 12233334433332 2223332
Q ss_pred eeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 001353 700 ELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (1093)
Q Consensus 700 ~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DIT 735 (1093)
. ++|..+|+.++..|+.+ +|. .|++.+++||+
T Consensus 84 -~-~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 84 -V-VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp -E-ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred -e-cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 2 57899999999999999 776 68999999985
No 120
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.94 E-value=1.7e-09 Score=125.17 Aligned_cols=108 Identities=12% Similarity=0.084 Sum_probs=92.5
Q ss_pred cCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCC-ceEEEEEEEeeeccCC
Q 001353 627 ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED-KNVELKLRKFELQKQH 705 (1093)
Q Consensus 627 ~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~-~~~e~~l~~~~~~kdG 705 (1093)
..+.++..|.+|+++|+|+++..++||+++|++|+++. +++||++.+.+...+..++.++.. ...++++ .++||
T Consensus 277 ~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~-~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~----~~kdG 351 (387)
T 4f3l_B 277 SMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCY-EYFHQDDIGHLAECHRQVLQTREKITTNCYKF----KIKDG 351 (387)
T ss_dssp CCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGG-GTBCHHHHHHHHHHHHHHTTCSSCEECCCEEE----ECTTS
T ss_pred CceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHH-HeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEE----EccCC
Confidence 45678889999999999999999999999999999999 999999999999999998866543 3345555 47899
Q ss_pred cEEEEEEEEEEeecC-CCCEEEEEEEEEecchhHH
Q 001353 706 SVVYILVNACTSRDY-KNNVKGVCFVGQDITHEKV 739 (1093)
Q Consensus 706 ~~~~v~v~~~pi~d~-~g~v~gv~~v~~DITerK~ 739 (1093)
+++|+..++.+++|. +|++.+++++.+|||+||.
T Consensus 352 ~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 352 SFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp CEEEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred CEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 999999999999997 8899999999999999984
No 121
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.93 E-value=2.6e-09 Score=100.72 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=69.4
Q ss_pred HHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeee
Q 001353 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFEL 701 (1093)
Q Consensus 622 ~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~ 701 (1093)
.++++++++|+++|.+|+|+|+|+++++++||+++|++|+++. +++||++.+.+...+. ........++++ .
T Consensus 3 ~lle~~~d~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~-~~ihp~D~~~~~~~~~---~~~~~~~~e~r~----~ 74 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLK-TFLHEEDQFLVESYFY---NEHHLMPCTFRF----I 74 (111)
T ss_dssp ------CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCGGGHHHHHHHHH---CSCCSSCEEEEE----E
T ss_pred chhhcCCCEEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHH-HeECHhHHHHHHHHHh---ccCCCccEEEEE----E
Confidence 5789999999999999999999999999999999999999999 9999999988766553 222223344443 5
Q ss_pred ccCCcEEEEEEEEEEeecCCCC
Q 001353 702 QKQHSVVYILVNACTSRDYKNN 723 (1093)
Q Consensus 702 ~kdG~~~~v~v~~~pi~d~~g~ 723 (1093)
++||+.+|+.++..++++..+.
T Consensus 75 ~kdG~~~wve~~~~~v~~~~~~ 96 (111)
T 2vlg_A 75 KKDHTIVWVEAAVEIVTTRAER 96 (111)
T ss_dssp CTTSCEEEEEEEEEEC------
T ss_pred cCCCCEEEEEEEEEEEecccCC
Confidence 7999999999999999986553
No 122
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=98.93 E-value=2.1e-08 Score=100.70 Aligned_cols=158 Identities=11% Similarity=0.073 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHH
Q 001353 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQA 289 (1093)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~ 289 (1093)
++.++.+.++...+.+ +.+++++++.+++.+.+++|+|++.||-+++++..-++.-+....-+..-...+|..+ .-
T Consensus 4 l~~L~~L~~i~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~--~~ 79 (171)
T 3trc_A 4 MNMLKILRQITQEVNA--APNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGE--GL 79 (171)
T ss_dssp HHHHHHHHHHHHHHHH--CSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTC--HH
T ss_pred HHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCC--Ch
Confidence 3455666777777887 6799999999999999999999999999999875433333332222222333555443 33
Q ss_pred HHHhHhcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEe
Q 001353 290 ARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVC 369 (1093)
Q Consensus 290 ~r~l~~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~ 369 (1093)
....+..++.-+|.|+...|-.. . .| .+...++++.+++||+.+| +++|.|.+
T Consensus 80 ~~~~~~~~~~~~~~d~~~~~~~~-~------------------~~----~~~~~~~~s~l~vPl~~~~----~~~Gvl~~ 132 (171)
T 3trc_A 80 IGLVGEREEPINLADAPLHPAYK-H------------------RP----ELGEEDYHGFLGIPIIEQG----ELLGILVI 132 (171)
T ss_dssp HHHHHHHTSCEEESCGGGSTTCC-C------------------CG----GGCCCCCCEEEEEEEEETT----EEEEEEEE
T ss_pred hhHHHhcCCeEEeCCCCCCCccc-c------------------cc----cCCcccccEEEEEeEEECC----EEEEEEEE
Confidence 45566777777888876543320 0 01 0234788999999999988 99999999
Q ss_pred ecCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 001353 370 HHTSPRYIPFPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 370 h~~~p~~~~~~~r~~~~~l~~~~~~~l~~ 398 (1093)
.+..|+.|+...+.+++.++.+++..|..
T Consensus 133 ~~~~~~~f~~~d~~~l~~la~~~a~ai~~ 161 (171)
T 3trc_A 133 QQLESHHFAEEEEAFCVTLAIHLAAEIAH 161 (171)
T ss_dssp EESSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998853
No 123
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=98.91 E-value=5.4e-08 Score=97.04 Aligned_cols=155 Identities=10% Similarity=0.061 Sum_probs=112.4
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHH
Q 001353 213 QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARF 292 (1093)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~ 292 (1093)
+..+.++...+.+ +.+++++++.+++.+++++++|++.||-++++...-.+.-+....-...-+..+|..+ .-...
T Consensus 9 l~~l~~~~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~--~~~~~ 84 (171)
T 3ci6_A 9 LDTLRRIVQEINS--SVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSE--GLVGL 84 (171)
T ss_dssp HHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTS--HHHHH
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccC--Ceehh
Confidence 4455667777777 6799999999999999999999999999998865444433333332233344555432 24455
Q ss_pred hHhcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecC
Q 001353 293 LFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHT 372 (1093)
Q Consensus 293 l~~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~ 372 (1093)
.+..++...+.|+...+-. .+.......|+++.+++||+.+| +++|.|.+.+.
T Consensus 85 ~~~~~~~~~~~d~~~~~~~-----------------------~~~~~~~~~~~~s~l~vPl~~~~----~~~Gvl~l~~~ 137 (171)
T 3ci6_A 85 VGQREEIVNLENASKHERF-----------------------AYLPETGEEIYNSFLGVPVMYRR----KVMGVLVVQNK 137 (171)
T ss_dssp HHHHTSCEEESSGGGSTTC--------------------------------CCCEEEEEEEEETT----EEEEEEEEEES
T ss_pred hhccCceEEecCCCcCcch-----------------------hccccccccccceEEEEeEEECC----EEEEEEEEecC
Confidence 6677777788877544321 11112366789999999999988 99999999999
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHH
Q 001353 373 SPRYIPFPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 373 ~p~~~~~~~r~~~~~l~~~~~~~l~~ 398 (1093)
.|+.|+...+.+++.++.+++..|..
T Consensus 138 ~~~~f~~~~~~~l~~la~~~a~al~~ 163 (171)
T 3ci6_A 138 QPQDFSEAAESFLVTLCAQLSGVIAH 163 (171)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998853
No 124
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=98.90 E-value=4.8e-09 Score=104.78 Aligned_cols=102 Identities=7% Similarity=0.050 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc------ccC---------------CCc-
Q 001353 743 KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------ITG---------------QGT- 800 (1093)
Q Consensus 743 ~L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG------~~~---------------~~~- 800 (1093)
++++++..++.+++++++ ||+++|.+|+|++||+++++++|+++++++| ... +..
T Consensus 16 ~~~~~~~~l~~il~~~~~---gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~~~~~~~~~l~~vl~~G~~~ 92 (152)
T 3mxq_A 16 AMAKSRLLLSELLDQLSF---ALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPESADYLKRKIDTALVIESSS 92 (152)
T ss_dssp HHHHHHHHHHHHHHHHCC---EEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGGGHHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHHHHhcCCC---CEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCChHHHHHHHHHHHHhcCCce
Confidence 466777788999999998 9999999999999999999999999999999 111 000
Q ss_pred --------cceeeEE---EccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHH
Q 001353 801 --------ENFPFGF---FNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQP 847 (1093)
Q Consensus 801 --------~~~e~~~---~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~ 847 (1093)
..+++.. ..++|..++..++..|+.|++|++.|++.+++|||++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 93 FSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp EEECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC---
T ss_pred eeecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhc
Confidence 0011111 2346778899999999999999999999999999998754
No 125
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.90 E-value=3.5e-09 Score=103.72 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=82.8
Q ss_pred HHHhcCccEEEEC---CCCcEEEecHHHHHhcCCCccccCCCCcccccccccc-----------HHHHHHHHHHHHcCCC
Q 001353 623 LIETATAPIFGVD---SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEES-----------QGAVENLICRALLGEE 688 (1093)
Q Consensus 623 lie~~~~~I~~~D---~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~-----------~~~~~~~l~~~l~g~~ 688 (1093)
++++. ++++++| .+|+|+++|+++++++||+.++++|+++. .+++++. .......+...+..+.
T Consensus 31 ~~~~~-~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (149)
T 3d72_A 31 PVDTS-VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCR-FLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNA 108 (149)
T ss_dssp SCCTT-SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTC
T ss_pred hhcCC-ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChh-HhCCccccccccccccccChHHHHHHHHHHHCCC
Confidence 45664 9999999 79999999999999999999999999988 7777762 3333344444444444
Q ss_pred CceEEEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEe
Q 001353 689 DKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733 (1093)
Q Consensus 689 ~~~~e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~D 733 (1093)
....++.+ .+++|+.+|+.++..|++|.+|++.+++++++|
T Consensus 109 ~~~~e~~~----~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 109 EVQVEVVN----FKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp CEEEEEEE----ECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred ceEEEEEE----ECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 43444333 478999999999999999999999999999877
No 126
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=98.88 E-value=4.7e-09 Score=97.69 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcccc-----------------CCCccceee
Q 001353 743 KFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGIT-----------------GQGTENFPF 805 (1093)
Q Consensus 743 ~L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG~~-----------------~~~~~~~e~ 805 (1093)
++.+..+.++.+++++++ +|+++|.+|+++++|+++++++||++++++|.. ......++.
T Consensus 7 ~~e~~~~~~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 83 (118)
T 3olo_A 7 QSELEFKFAHYLINNAVE---ASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHDWEEIRQKNNYTFKT 83 (118)
T ss_dssp CHHHHHHHHHHHHHHCSS---EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSCHHHHHHHSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCc---eEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHHHHHHHhcCcEEEEE
Confidence 344455567889999998 899999999999999999999999999999911 112335677
Q ss_pred EEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecc
Q 001353 806 GFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 842 (1093)
Q Consensus 806 ~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DIT 842 (1093)
.+.+++|+.+|+.++..++.+.++ .+++++++|||
T Consensus 84 ~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~DIT 118 (118)
T 3olo_A 84 RYRSQSGRIFLVEMSLTFLEDQER--RFSCVFVREKS 118 (118)
T ss_dssp EEECTTCCEEEEEEEEEEEEETTE--EEEEEEEEEC-
T ss_pred EEEccCCCEEEEEEEEEEEEECCc--cEEEEEEEeCC
Confidence 888999999999999999876543 35779999997
No 127
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=98.88 E-value=2.4e-08 Score=102.34 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCC-------C-CCccCCccC
Q 001353 212 SQKLAVSAISRLQALPG-GDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSD-------L-EPYLGIHFP 282 (1093)
Q Consensus 212 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~-------~-~~~lg~~~p 282 (1093)
....+.++.+.+.+ + .+++++++.+++.+++++|+|++.||-++++.. +.+......+ + +...+.++|
T Consensus 11 ~~~~L~~~~~~l~~--~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (189)
T 2e4s_A 11 LNDFLLDVSKTYFD--NIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNK-ELYSDLFDIGEEKEGKPVFKKTKEIRFS 87 (189)
T ss_dssp HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTT-EEEEEEEEEEEEETTEEEEEECCCCEEE
T ss_pred HHHHHHHHHHHHHh--cccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCC-EEEEEEeccCccccccccccCCcceEee
Confidence 34455566666655 4 499999999999999999999999999998764 3333321111 1 234455666
Q ss_pred CCCchHHHHHhHhcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcc
Q 001353 283 ANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMK 362 (1093)
Q Consensus 283 ~~dip~~~r~l~~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~ 362 (1093)
.. ..-+...+..++..+|+|+...|-- +.+...+..+++++.|++||+.+| +
T Consensus 88 ~~--~~~~~~v~~~~~~~~i~d~~~~~~~----------------------~~~~~~~~~~~~~s~l~vPl~~~~----~ 139 (189)
T 2e4s_A 88 IE--KGIAGQVARTGEVLNIPDAYADPRF----------------------NREVDLYTGYTTRNILCMPIVSRG----S 139 (189)
T ss_dssp TT--SHHHHHHHHHCCCEEESCGGGSTTC----------------------CTHHHHHHCCCCCCEEEEEEEETT----E
T ss_pred CC--CcHHHHHHHhCCEEEecCCCcCccc----------------------ChhhccccCCccceEEEEEeccCC----e
Confidence 43 2345566777888888887654432 334566778999999999999888 9
Q ss_pred eeEEEEeecCCCC-CCCchHHHHHHHHHHHHHHHHHH
Q 001353 363 LWGLVVCHHTSPR-YIPFPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 363 LWGl~~~h~~~p~-~~~~~~r~~~~~l~~~~~~~l~~ 398 (1093)
++|.|.+++..++ .|+.....+++.++.++++.|..
T Consensus 140 ~iGvl~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~n 176 (189)
T 2e4s_A 140 VIGVVQMVNKISGSAFSKTDENNFKMFAVFCALALHC 176 (189)
T ss_dssp EEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999866 99999999999999999999854
No 128
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=98.88 E-value=1.8e-08 Score=102.83 Aligned_cols=143 Identities=13% Similarity=0.054 Sum_probs=107.8
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCeEEEecCCC
Q 001353 228 GGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHA 307 (1093)
Q Consensus 228 ~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~ 307 (1093)
+.+++++++.+++.+++++|+|++.||.+++++.-.+++-.-.+....--....|..+ ......+..++..+++|+..
T Consensus 15 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~~l~~~a~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~d~~~ 92 (181)
T 2qyb_A 15 TLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKGVLRVRSYSGKGIAGIAGKDWEPEIE--TYIGEAFLSNRLQFVNDTQY 92 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTSCEEEEEEEESCTTSTTCSCBCCCTT--SHHHHHHHHTSCEEESCGGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCCCEEEEEEeCCCcceecccccccCCC--CchhhhhhcCCCEEecChhc
Confidence 4589999999999999999999999999955554445544332221101112333122 24555677788888888754
Q ss_pred CCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcc-eeEEEEeec-CCCCCCCchHHHHH
Q 001353 308 IPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMK-LWGLVVCHH-TSPRYIPFPLRYAC 385 (1093)
Q Consensus 308 ~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~-LWGl~~~h~-~~p~~~~~~~r~~~ 385 (1093)
.+- +....++...|+++.+++||..+| + +||.|.+++ ..|+.|+.+...++
T Consensus 93 ~~~-----------------------~~~~~~~~~~g~~s~~~vPl~~~~----~~~~GvL~l~~~~~~~~f~~~d~~lL 145 (181)
T 2qyb_A 93 MTK-----------------------PLTRELMQKEGIKSFAHIPISRKG----EPPFGILSVFSRTIVGLFNEPFLNLL 145 (181)
T ss_dssp CSC-----------------------HHHHHHHHHTTCCEEEEEEECCTT----SCCCEEEEEEESSCSSCCCHHHHHHH
T ss_pred CCc-----------------------hhhHHHHHhcCcceEEEEEEEeCC----CeEEEEEEEecCCCCCCCCHHHHHHH
Confidence 332 556778889999999999999887 8 999999999 67999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 001353 386 EFLVQAFSLQLYME 399 (1093)
Q Consensus 386 ~~l~~~~~~~l~~~ 399 (1093)
+.++.+++..|...
T Consensus 146 ~~la~~~a~al~~a 159 (181)
T 2qyb_A 146 ESLAGQLAQAVKIV 159 (181)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998643
No 129
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=98.88 E-value=3.4e-08 Score=100.05 Aligned_cols=149 Identities=10% Similarity=0.023 Sum_probs=108.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhc
Q 001353 217 VSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296 (1093)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~ 296 (1093)
.++...+.+ +.+++++++.+++.+.+++++|++.||.+++++. .+.+ +...+.+..-+..+|..+= -....+..
T Consensus 18 ~~i~~~l~~--~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~~~~-~~g~~~~~~~~~~~~~~~~--~~~~~~~~ 91 (181)
T 3e0y_A 18 EEISMLVSS--DFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEV-VLAA-THGFDPAFIGKIRIKIGDG--ITGSVARD 91 (181)
T ss_dssp HHHHHHHST--TSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEE-EEEE-EESSCGGGTTTCEEETTTS--SHHHHHHH
T ss_pred HHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCc-eEEE-ecCCCHHHhccccccCCCC--eeeehhhc
Confidence 455666666 6699999999999999999999999999999877 4333 3332222233344543321 23445667
Q ss_pred CCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCCC
Q 001353 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRY 376 (1093)
Q Consensus 297 ~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~~ 376 (1093)
++..+|+|+...|-. .+...+...|+++.+++||+.+| +++|.|.+++..|+.
T Consensus 92 ~~~~~i~d~~~~~~~-----------------------~~~~~~~~~~~~s~l~vPl~~~~----~~iGvl~~~~~~~~~ 144 (181)
T 3e0y_A 92 GQYISLSRASQDPRY-----------------------RYFPELQEEKYNSMLSFPIGDKK----EVYGVINLNTTSIRS 144 (181)
T ss_dssp CCCEEEEEECCCCCC--------------------------------CEEEEEEEEEECSS----CEEEEEEEEESSCCC
T ss_pred CCeEEecCcccCccc-----------------------cccccccccCcceEEEEEEEeCC----eEEEEEEEeeCCCCC
Confidence 777788888765432 01122456789999999999888 999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHH
Q 001353 377 IPFPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 377 ~~~~~r~~~~~l~~~~~~~l~~ 398 (1093)
|+.....+++.++.+++..|..
T Consensus 145 f~~~~~~~l~~la~~~a~al~~ 166 (181)
T 3e0y_A 145 FHEDEIYFVSIIANLILTAIKL 166 (181)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998853
No 130
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=98.87 E-value=6e-09 Score=111.93 Aligned_cols=119 Identities=10% Similarity=0.080 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHh------------CCCcchhcccc-----CC----------Ccc
Q 001353 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVT------------GWMRHEVIGIT-----GQ----------GTE 801 (1093)
Q Consensus 749 ~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~------------G~~~eEliG~~-----~~----------~~~ 801 (1093)
.+++.++++++. +|+++|.+|+|+++|+++++++ ||++++++|.. .. ...
T Consensus 22 ~~l~~iLd~~~~---~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~~~~~~~~~~~~~~ 98 (233)
T 3vol_A 22 ARIKSALDNVSA---NVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNPAHQRHLLANLTG 98 (233)
T ss_dssp HHHHHHHTTSSS---EEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSSHHHHHHHHHTCCS
T ss_pred HHHHHHHhcCCC---cEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCCHHHHHHHHHhccc
Confidence 456788898887 8999999999999999999998 89999999911 00 000
Q ss_pred ceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh
Q 001353 802 NFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKN 875 (1093)
Q Consensus 802 ~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~elq~~~e~~~~~k~~~la~isHELrn 875 (1093)
.....+ ..+|. |+.+++.|+.|.+|++.|++++++|||++++.+.++++..+... ..+|...+.|+-++
T Consensus 99 ~~~~~~-~~~g~--~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~a~~--~gdl~~ri~~~~~~ 167 (233)
T 3vol_A 99 VHKAEL-NLGGR--RFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQAAA--AGDFSKRVEEAGKE 167 (233)
T ss_dssp CEEEEE-EETTE--EEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHHHHH--CC------------
T ss_pred ceeEEE-EECCE--EEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHHHHh--CCcccccccccccc
Confidence 112222 23554 67899999999999999999999999999998887776665553 34555555554443
No 131
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.87 E-value=7e-09 Score=117.14 Aligned_cols=95 Identities=14% Similarity=0.132 Sum_probs=82.8
Q ss_pred HHHhcCCCCCceEEecC---CCcEeechhhhHHHhCCCcchhcc----------------------ccCCCccceeeEEE
Q 001353 754 IIQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIG----------------------ITGQGTENFPFGFF 808 (1093)
Q Consensus 754 i~~~~~~li~~I~~~D~---~g~i~~~N~a~~~l~G~~~eEliG----------------------~~~~~~~~~e~~~~ 808 (1093)
+++++++ +||++|. +|++++||+++++++||+++|++| ...+.....++++.
T Consensus 16 ~~~~~~~---~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 92 (332)
T 2wkq_A 16 TLERIEK---NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINY 92 (332)
T ss_dssp CGGGCCS---EEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HhhcCCC---cEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEE
Confidence 4556666 8999999 999999999999999999999999 12233456778899
Q ss_pred ccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHHHHH
Q 001353 809 NRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEA 851 (1093)
Q Consensus 809 ~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~el 851 (1093)
++||+.+|+.++..|+.|.+|.+.|++++++|||++++.+.+.
T Consensus 93 ~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~ 135 (332)
T 2wkq_A 93 TKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAER 135 (332)
T ss_dssp CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHH
T ss_pred cCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhc
Confidence 9999999999999999999999999999999999998877553
No 132
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.83 E-value=1.6e-08 Score=116.37 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEE
Q 001353 618 CEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLR 697 (1093)
Q Consensus 618 ~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~ 697 (1093)
+++..+++++++||+++|.+|+|++||++ +++| ++.++++|+++. +++++.....+...+.....|. ....++.+.
T Consensus 239 ~~l~~IL~~l~dgIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~-~~~p~~~~~~~~~l~~~l~~g~-~~~~~~~~~ 314 (369)
T 3cax_A 239 EELKAIFEALPVDVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQ-LCHPPKSVYVVNKILKAFKEGR-KKEATFWLR 314 (369)
T ss_dssp HHHHHHHHHSSSEEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTT-TSSCGGGHHHHHHHHHHHHHTS-CSCEEEEEE
T ss_pred HHHHHHHHhCCCcEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHH-HHCChhhHHHHHHHHHHHHcCC-ceEEEEEEe
Confidence 45788999999999999999999999999 9999 899999999998 7777665555544444444443 333333332
Q ss_pred EeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHH
Q 001353 698 KFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDK 743 (1093)
Q Consensus 698 ~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~ 743 (1093)
.+| +++.++..|++|.+|++.|++.+++|||+.++.+++
T Consensus 315 -----~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le~~ 353 (369)
T 3cax_A 315 -----LRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEGE 353 (369)
T ss_dssp -----ETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCSC
T ss_pred -----eCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHHHH
Confidence 234 688999999999999999999999999999887654
No 133
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.82 E-value=3.5e-08 Score=113.06 Aligned_cols=203 Identities=12% Similarity=0.048 Sum_probs=131.3
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHh
Q 001353 214 KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFL 293 (1093)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l 293 (1093)
+.+.++...| + +.+++++++.+++.+++++++||+.||.+++++. +.++...... ...-+.++|...= -....
T Consensus 14 ~~l~~l~~~l-~--~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~l~~~~~~g~-~~~~~~~~~~~~g--~~g~~ 86 (368)
T 1mc0_A 14 RKILQLCGEL-F--DLDATSLQLKVLQYLQQETQATHCCLLLVSEDNL-QLSCKVIGDK-VLGEEVSFPLTMG--RLGQV 86 (368)
T ss_dssp HHHHHHHHTC-C--CSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSC-EEEEEEETTE-EEEEEEEEESSSS--SHHHH
T ss_pred HHHHHHHHHH-h--hhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCC-eEEEEecCCC-ccccceeeccccC--HHHHH
Confidence 3445666666 5 6799999999999999999999999999998864 5555544321 2222344553321 12445
Q ss_pred HhcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEc--CCCCcceeEEEEeec
Q 001353 294 FKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN--SKDSMKLWGLVVCHH 371 (1093)
Q Consensus 294 ~~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~--~~~~~~LWGl~~~h~ 371 (1093)
+..++.-.|+|+...|. ++......++++|.|++||+.+ | ++||.|.+++
T Consensus 87 ~~~~~~~~i~d~~~~~~------------------------~~~~~~~~~~~~s~l~vPl~~~~~~----~~~Gvl~l~~ 138 (368)
T 1mc0_A 87 VEDKQCIQLKDLTSDDV------------------------QQLQNMLGCELQAMLCVPVISRATD----QVVALACAFN 138 (368)
T ss_dssp HHHCCCEEGGGSCHHHH------------------------HHHHHHHCSCCCCEEEEEEECTTTC----SEEEEEEEEE
T ss_pred HhcCCeEEecccccccc------------------------cccccccCcccceEEEEEeecCCCC----cEEEEEEeec
Confidence 67777777777654322 3445677888999999999987 7 9999999888
Q ss_pred CC-CCCCCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcc-CCCcccccC-CcchhhhccCCEEE
Q 001353 372 TS-PRYIPFPLRYACEFLVQAFSLQLYMELQVA-MQLAEKNILRTQVLLCDMLLR-DAPFSIVTQ-SPSIMDLVKCDGAA 447 (1093)
Q Consensus 372 ~~-p~~~~~~~r~~~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~a~g~a 447 (1093)
+. ++.|+.....+++.++..++..|......+ .+..++.......+...+... .....+... ...+.++++|+.++
T Consensus 139 ~~~~~~f~~~d~~~l~~la~~~~~al~~~~l~~~~~~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 218 (368)
T 1mc0_A 139 KLGGDFFTDEDEHVIQHCFHYTGTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICS 218 (368)
T ss_dssp ESSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcccEEE
Confidence 86 567999999999999999999886432111 111111111112221122111 122222222 24577789999888
Q ss_pred EEEC
Q 001353 448 LYYG 451 (1093)
Q Consensus 448 l~~~ 451 (1093)
|+.-
T Consensus 219 i~l~ 222 (368)
T 1mc0_A 219 VFLL 222 (368)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8553
No 134
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.81 E-value=3.1e-07 Score=114.63 Aligned_cols=203 Identities=13% Similarity=0.068 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCC-CCCCccCCccCCCCchHHH
Q 001353 212 SQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS-DLEPYLGIHFPANDIPQAA 290 (1093)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~-~~~~~lg~~~p~~dip~~~ 290 (1093)
+.+.+.++...|. +.+++++++++++.+++++|+||+.||.|++|+. +.+...... ..+. ..++|.. .-.
T Consensus 13 ~~~~L~~i~~~ls---~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~-~l~~~~~~g~~~~~--~~~~p~~---Gi~ 83 (691)
T 3ibj_A 13 RDRKILQLCGELY---DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNL-QLSCKVIGDKVLGE--EVSFPLT---GCL 83 (691)
T ss_dssp HHHHHHHHHHHCC---CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSS-EEEEEEETTEEEEE--EEEEECC---SSS
T ss_pred HHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCC-eEEEEecCCCcccc--ceecCCc---cHH
Confidence 4455566666665 5699999999999999999999999999999854 444332221 1221 1344433 123
Q ss_pred HHhHhcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEc--CCCCcceeEEEE
Q 001353 291 RFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN--SKDSMKLWGLVV 368 (1093)
Q Consensus 291 r~l~~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~--~~~~~~LWGl~~ 368 (1093)
...+..++.-.|+|+...| ..+..+....+++|.|++||+.+ | ++||.|.
T Consensus 84 g~v~~~~~pv~i~d~~~~~------------------------~~~~~~~~~~~~~S~L~vPI~~~~~g----~viGvL~ 135 (691)
T 3ibj_A 84 GQVVEDKKSIQLKDLTSED------------------------VQQLQSMLGCELQAMLCVPVISRATD----QVVALAC 135 (691)
T ss_dssp HHHHHHCCCEEGGGSCHHH------------------------HHHHHHHHTSCCSCEEEEEEECSSSC----SEEEEEE
T ss_pred HHHHHHCCeEEeccchhcc------------------------ccccccccCCccceEEEEEeEcCCCC----cEEEEEE
Confidence 3455566666666664322 23556777788999999999987 7 9999999
Q ss_pred eecCC-CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhc-cCCCcccccC-CcchhhhccCC
Q 001353 369 CHHTS-PRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNIL-RTQVLLCDMLL-RDAPFSIVTQ-SPSIMDLVKCD 444 (1093)
Q Consensus 369 ~h~~~-p~~~~~~~r~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~-~~~~~~l~~a~ 444 (1093)
.+++. ++.|......+++.++..++..+..........++++.+ ...++...+.. ......+... ...+..+++||
T Consensus 136 l~~~~~~~~ft~~d~~lL~~la~~~a~al~~a~l~~~~~~~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~~l~ad 215 (691)
T 3ibj_A 136 AFNKLEGDLFTDEDEHVIQHCFHYTSTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAE 215 (691)
T ss_dssp EESBSSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHHHHTEE
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhCCC
Confidence 88885 678999999999999999988885432222111111111 11222222222 1222333322 24577889999
Q ss_pred EEEEEEC
Q 001353 445 GAALYYG 451 (1093)
Q Consensus 445 g~al~~~ 451 (1093)
.++|+.-
T Consensus 216 ~~~i~L~ 222 (691)
T 3ibj_A 216 ICSVFLL 222 (691)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 9888653
No 135
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=98.80 E-value=6.4e-09 Score=106.95 Aligned_cols=101 Identities=12% Similarity=0.159 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEec-CCCcEeechhhhHHHhCCCcchhcc----------------------c-cCCCc
Q 001353 745 IRLQGDYEAIIQSVNPLIPPIFASD-ENACCSEWNAAMEKVTGWMRHEVIG----------------------I-TGQGT 800 (1093)
Q Consensus 745 ~~se~~lr~i~~~~~~li~~I~~~D-~~g~i~~~N~a~~~l~G~~~eEliG----------------------~-~~~~~ 800 (1093)
.+.+++|+.+++++++ +|+++| .+|+++++|+++++++|++ +++| . .+...
T Consensus 33 ~~~~~~l~~l~~~~~~---~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 107 (185)
T 3kx0_X 33 VGAAEDVRRIFEHIPA---ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQ 107 (185)
T ss_dssp TCCHHHHHHHHHHCSS---EEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCE
T ss_pred hhhHHHHHHHHhcCCc---eEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcc
Confidence 4556789999999998 899999 9999999999999999999 7777 0 11111
Q ss_pred cceeeEE--EccC--CcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHHHH
Q 001353 801 ENFPFGF--FNRQ--GQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALE 850 (1093)
Q Consensus 801 ~~~e~~~--~~kd--G~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~e 850 (1093)
...++.+ .+++ |..+|+.++..|+.+.+|.+.|++++++|||++++.+.+
T Consensus 108 ~~~~~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 108 SGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp EEEEEEEC--------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC-
T ss_pred cccceeEEeeccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHH
Confidence 1111222 2222 788999999999999999999999999999998887755
No 136
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.78 E-value=1.7e-09 Score=100.61 Aligned_cols=109 Identities=16% Similarity=0.182 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCC---CccccCCCCccccccccccHHHHHHHHHHHHcC
Q 001353 610 VDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGL---PASEAMGKSLIDEVVHEESQGAVENLICRALLG 686 (1093)
Q Consensus 610 ~~eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~---~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g 686 (1093)
.++++..+++++.++++++++++++|.+|+|+++|+++++++|+ +.++++|+++. +++++.. +...+..
T Consensus 7 ~~~l~~~~~~~~~il~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~-~~~~~~~-------~~~~~~~ 78 (118)
T 2w0n_A 7 PYEISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSH-SWSQVVD-------VSEVLRD 78 (118)
T ss_dssp HHHHCTTHHHHHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTC-CCSCTHH-------HHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccccEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcc-cccCchh-------HHHHhcc
Confidence 35566677888999999999999999999999999999999997 88999999998 7766542 2233333
Q ss_pred CCCceEEEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 001353 687 EEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (1093)
Q Consensus 687 ~~~~~~e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DIT 735 (1093)
+...... .+ ..+| +|+.++..|+.+ +|++.|++++++|||
T Consensus 79 ~~~~~~~-~~-----~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 79 GTPRRDE-EI-----TIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp TCCCCCC-CE-----ESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred CceeccE-EE-----EECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 3321111 11 1234 578888899988 888889999999998
No 137
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=98.77 E-value=3.3e-08 Score=97.70 Aligned_cols=138 Identities=9% Similarity=0.067 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCC-ccCCccCCCCchHHHHHhHhcCCeEEEecCC
Q 001353 228 GGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP-YLGIHFPANDIPQAARFLFKQNRVRMICDCH 306 (1093)
Q Consensus 228 ~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~-~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~ 306 (1093)
|.|++++++.+++.+.+++|+|++.||-+++++.=.+++- .+++. +... .....+ ....+..++.-+|.|+.
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~l~~~a~---~g~~~~~~~~-~~~~~~---~~~~~~~~~~~~i~d~~ 73 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAGTMRFVAA---RGLSEHYQRA-VDGHSP---WITGANEPEPIFVENVD 73 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEE---ESCCHHHHHH-TCBCCS---CC---CCCCCEEESCGG
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCCcEEEEee---CCCCHHHHhh-ccCCCc---hhhhhhcCCcEEEeChh
Confidence 4589999999999999999999999999999873222221 11211 1100 000000 11223334444555554
Q ss_pred CCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCCCCCchHHHHHH
Q 001353 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACE 386 (1093)
Q Consensus 307 ~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~~~~~~~r~~~~ 386 (1093)
..|. .+.+.+.+...|++|.+++||..+| +++|.|..++..|+.|+..++.+++
T Consensus 74 ~~~~----------------------~~~~~~~~~~~g~~s~~~vPl~~~~----~~iGvl~~~~~~~~~f~~~~~~ll~ 127 (151)
T 3hcy_A 74 DAEF----------------------SRELKESIVGEGIAALGFFPLVTEG----RLIGKFMTYYDRPHRFADSEIGMAL 127 (151)
T ss_dssp GSCC----------------------CHHHHHHHHHHTCCEEEEEEEESSS----SEEEEEEEEESSCCCCCHHHHHHHH
T ss_pred hCcc----------------------cchhHHHHHhcCchheEEeceEECC----EEEEEEEEecCCCCCCCHHHHHHHH
Confidence 4432 1556778899999999999999877 9999999999899999999999999
Q ss_pred HHHHHHHHHHHH
Q 001353 387 FLVQAFSLQLYM 398 (1093)
Q Consensus 387 ~l~~~~~~~l~~ 398 (1093)
.++.+++..|..
T Consensus 128 ~~a~~~a~ai~~ 139 (151)
T 3hcy_A 128 TIARQLGFSIQR 139 (151)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998854
No 138
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.77 E-value=1.3e-09 Score=134.33 Aligned_cols=97 Identities=9% Similarity=0.021 Sum_probs=86.6
Q ss_pred HHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc---------------------ccCCCccceeeEE
Q 001353 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG---------------------ITGQGTENFPFGF 807 (1093)
Q Consensus 749 ~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG---------------------~~~~~~~~~e~~~ 807 (1093)
.+++.++++.++ +|+..|.+|+|++||+++++++||+.+|++| ...+..+..++++
T Consensus 518 ~~~~~lle~a~~---~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~~l~~g~~~~~E~~~ 594 (635)
T 4eho_A 518 PQASSQVHASMQ---PVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAELIDHGRGWRGEVLL 594 (635)
T ss_dssp SSHHHHHHHCSS---CCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHHHHHHCCCBCCCCEE
T ss_pred HHHHHHHHhCCC---cEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHHHHHcCCcEEEEEEE
Confidence 456778888887 8999999999999999999999999999988 2234456678899
Q ss_pred EccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHH
Q 001353 808 FNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPA 848 (1093)
Q Consensus 808 ~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e 848 (1093)
.++||+.+|+.+++.|++|.+|+++|++++++|||++|++|
T Consensus 595 ~~~dG~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 595 RGAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp CCSSSSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCCC
T ss_pred EccCCcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhCC
Confidence 99999999999999999999999999999999999998753
No 139
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.77 E-value=3e-09 Score=99.51 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=75.4
Q ss_pred hcCccEEEECCC-CcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcC-CCCc---eEEEEEEEee
Q 001353 626 TATAPIFGVDSS-GTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG-EEDK---NVELKLRKFE 700 (1093)
Q Consensus 626 ~~~~~I~~~D~d-G~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g-~~~~---~~e~~l~~~~ 700 (1093)
+.+++|+++|.+ |+|+++|++++++|||+.++++|+++. +++++.+.............. +... ..++. .
T Consensus 6 ~~~~~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 80 (114)
T 1ll8_A 6 EFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLT-QFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVD----I 80 (114)
T ss_dssp TTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGG-GGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEE----E
T ss_pred CCCceEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHH-HhcCcchhHHHHHHHHHhhccCCcceeccCcEEE----E
Confidence 456899999999 999999999999999999999999998 888876654333222211211 1110 11222 2
Q ss_pred eccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 001353 701 LQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (1093)
Q Consensus 701 ~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DIT 735 (1093)
.+++|+.+|+.++..|+.+.++ .+++++++|++
T Consensus 81 ~~~dG~~~~v~~~~~~~~~~~~--~~~v~~~~~~~ 113 (114)
T 1ll8_A 81 ISRSGEKIPVSVWMKRMRQERR--LCCVVVLEPVE 113 (114)
T ss_dssp CCTTCCCEEEECCEECCBSSSS--BEEEEEEEECC
T ss_pred EecCCCEEEEEEEEEeeccCCc--cEEEEEEeecC
Confidence 5789999999999999987554 36788889986
No 140
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=98.72 E-value=2.6e-08 Score=93.65 Aligned_cols=82 Identities=12% Similarity=0.138 Sum_probs=70.8
Q ss_pred ceEEecCCCcEeechhhhHHHhCCCcchhcc----------------------cc-CCCccceeeEEEccCCcEEEEEEE
Q 001353 764 PIFASDENACCSEWNAAMEKVTGWMRHEVIG----------------------IT-GQGTENFPFGFFNRQGQFVEVALT 820 (1093)
Q Consensus 764 ~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG----------------------~~-~~~~~~~e~~~~~kdG~~~~v~~~ 820 (1093)
+|+..|.+|+++++|+++++++||+++|++| .. +......++++.++||+++|+..+
T Consensus 15 ~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~~~~~~ 94 (121)
T 2kdk_A 15 FITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAKDGSFVTLKSQ 94 (121)
T ss_dssp EEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECSSSCEEEEEEE
T ss_pred EEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEcCCCEEEEEEE
Confidence 7999999999999999999999999999998 11 233346788899999999999999
Q ss_pred EeEeecCC-CcEEEEEEEEeecccCc
Q 001353 821 ASRRTDAE-GKVIGCFCFMQILVPDL 845 (1093)
Q Consensus 821 ~~~i~d~~-G~v~g~i~~~~DITe~k 845 (1093)
..|+.|.+ +.+.+++++.+||++..
T Consensus 95 ~~~~~d~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 95 WFSFTNPDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp EEEEECCSSSCEEEEEEEEECCSSCC
T ss_pred EEEEECCCCCeeeEEEEEEEeccccC
Confidence 99999986 56778899999999864
No 141
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=98.71 E-value=1.8e-08 Score=94.77 Aligned_cols=95 Identities=13% Similarity=0.206 Sum_probs=70.1
Q ss_pred HHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc----------------------ccCCCccceeeEEEc
Q 001353 752 EAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG----------------------ITGQGTENFPFGFFN 809 (1093)
Q Consensus 752 r~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG----------------------~~~~~~~~~e~~~~~ 809 (1093)
+.+++++++ +|+++|.+|+++++|+++++++|++.++++| ..+. ....++.+.+
T Consensus 2 ~~l~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 77 (126)
T 3mjq_A 2 KNFLETIED---MILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGK-KESLPLSLEK 77 (126)
T ss_dssp CTTGGGCSS---EEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTC-CSEEEEEEEC
T ss_pred hhHHhhCCc---eEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCC-CceeEEEEEc
Confidence 456777777 8999999999999999999999999999988 1122 2256788889
Q ss_pred cCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHHHHHH
Q 001353 810 RQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQ 852 (1093)
Q Consensus 810 kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~elq 852 (1093)
++|+.+|+.++..+..+. ...+++++++|||++++++.+..
T Consensus 78 ~~g~~~~~~~~~~~~~~~--~~~~~~~~~~DITe~k~a~~~~~ 118 (126)
T 3mjq_A 78 KEGTSIPAKARIWQGKWH--NEPCLFAIIKDLSKEERASSPPF 118 (126)
T ss_dssp TTSCEEEEEEEEEEEESS--SSEEEEEEEEECC----------
T ss_pred cCCCEEEEEEEEEeeeEC--CceEEEEEEEechHHHHhhcccc
Confidence 999999999998876653 35678999999999988776533
No 142
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=98.69 E-value=2.8e-07 Score=93.31 Aligned_cols=139 Identities=10% Similarity=0.071 Sum_probs=103.7
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCc--cCCccCCCCchHHHHHhHhcCCeEEEecC
Q 001353 228 GGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPY--LGIHFPANDIPQAARFLFKQNRVRMICDC 305 (1093)
Q Consensus 228 ~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~--lg~~~p~~dip~~~r~l~~~~~~r~i~d~ 305 (1093)
..+++++++.++++++++++||++-+|-+++ |+.+.++..+.-... .|..+|..+=+ ...-+..++..+ .|+
T Consensus 3 ~~sldevL~~v~~~l~~~~~~d~~~l~L~~~---~~L~l~a~~~~~~~~~~~~~~ip~~~s~--~~~v~~~~~~~v-~~~ 76 (165)
T 3o5y_A 3 AMSLDDIINNMIDKLKLLVHFDRISFLLLAN---ETLKLSHVYPKGSHSLDIGSTIPKEQSL--YWSALDQRQTIF-RSL 76 (165)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCSEEEEEEEET---TEEEEEEEESTTCCSSCTTCEECSTTCH--HHHHHHHTSCEE-EES
T ss_pred CCCHHHHHHHHHHHHHHhcCcceEEEEEEEC---CEEEEEEEecCCccccccccccCCccCH--HHHHHHhCCeEE-EcC
Confidence 3589999999999999999999999999975 344555544433333 56677763321 233344555544 454
Q ss_pred CCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCCCCCchHHHHH
Q 001353 306 HAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYAC 385 (1093)
Q Consensus 306 ~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~~~~~~~r~~~ 385 (1093)
...+-+ .++..|+...|++|.|++||+.+| ++||.|...+..|+.+..+...++
T Consensus 77 ~~~~~~----------------------~~~~~~~~~~~~~S~l~vPL~~~~----~~iGvl~l~~~~~~~f~~~d~~~l 130 (165)
T 3o5y_A 77 TDTQDN----------------------FYEKQYLAILDLKSILVIPIYSKN----KRVGVLSIGRKQQIDWSLDDLAFL 130 (165)
T ss_dssp CCTTCC----------------------CTTHHHHHTTTCCEEEEEEEECSS----CEEEEEEEEESSCCCCCHHHHHHH
T ss_pred cccccc----------------------cccchHHHhhCCCEEEEeCeeECC----EEEEEEEEEeCCCCCCCHHHHHHH
Confidence 333321 234478999999999999999988 999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 001353 386 EFLVQAFSLQLYM 398 (1093)
Q Consensus 386 ~~l~~~~~~~l~~ 398 (1093)
+.|+.++++.|+.
T Consensus 131 ~~la~~~aiai~n 143 (165)
T 3o5y_A 131 EQLTDHLAVSIEN 143 (165)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999853
No 143
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=98.07 E-value=3.6e-09 Score=118.24 Aligned_cols=148 Identities=11% Similarity=0.016 Sum_probs=105.0
Q ss_pred EEEEEEEeecCCCCEEEEEEEEE-ecchh---HHHHHHHHHHHHHHHHHHH-----------------hcCCCCCceEEe
Q 001353 710 ILVNACTSRDYKNNVKGVCFVGQ-DITHE---KVLMDKFIRLQGDYEAIIQ-----------------SVNPLIPPIFAS 768 (1093)
Q Consensus 710 v~v~~~pi~d~~g~v~gv~~v~~-DITer---K~aEe~L~~se~~lr~i~~-----------------~~~~li~~I~~~ 768 (1093)
+..+..|+++ +|+++|++.+.+ |+|++ +..|...++....|..++. ++++ ||+++
T Consensus 111 v~~~~~Pi~~-~g~vigvl~~~~~di~~~~~~~~~e~~~~~~~~~L~~mi~~~~~~~~~~~~~~~~~~~~~d---GIivv 186 (305)
T 2ykf_A 111 HSVEVSPVRF-GDQVVAVLTRHQPELAARRRSGHLETAYRLCATDLLRMLAEGTFPDAGDVAMSRSSPRAGD---GFIRL 186 (305)
Confidence 7889999998 689999999999 99997 5666666777777776664 4555 99999
Q ss_pred cCCCcEeechhhhHHHhC---CCcchhccccCCCcc-----------ceee----EEEc--------cCCcEEEEEEEEe
Q 001353 769 DENACCSEWNAAMEKVTG---WMRHEVIGITGQGTE-----------NFPF----GFFN--------RQGQFVEVALTAS 822 (1093)
Q Consensus 769 D~~g~i~~~N~a~~~l~G---~~~eEliG~~~~~~~-----------~~e~----~~~~--------kdG~~~~v~~~~~ 822 (1093)
|.+|+|+++|+++.+++| ++ ++++|..-.+.. .+.. .+.. .....+++.++..
T Consensus 187 D~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ei~~~~~~l~v~~~ 265 (305)
T 2ykf_A 187 DVDGVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMRMEVDAGGATVLLRTL 265 (305)
Confidence 999999999999999985 44 677771110000 0000 0000 0112356677788
Q ss_pred EeecCCCcEEEEEEEEeecccCcHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001353 823 RRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQ 871 (1093)
Q Consensus 823 ~i~d~~G~v~g~i~~~~DITe~k~~e~elq~~~e~~~~~k~~~la~isH 871 (1093)
|+.+ +|++.|++.+++|+|+.++.+.+++ .|...+..|+|
T Consensus 266 Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL~--------~K~~~IrEIHH 305 (305)
T 2ykf_A 266 PLVV-AGRNVGAAILIRDVTEVKRRDRALI--------SKDATIREIHH 305 (305)
Confidence 8886 5889999999999999887776543 35555666666
No 144
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.62 E-value=6e-07 Score=102.68 Aligned_cols=148 Identities=11% Similarity=0.154 Sum_probs=112.3
Q ss_pred HHHHHhhcCCC-CCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCC--CCccCCccCCCCchHHHHHhH
Q 001353 218 SAISRLQALPG-GDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL--EPYLGIHFPANDIPQAARFLF 294 (1093)
Q Consensus 218 ~~~~~~~~~~~-~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~--~~~lg~~~p~~dip~~~r~l~ 294 (1093)
++...+.+ + .+++++++.+++.+++++++||+.||.+++ |+.+..+...++ +...+..+|... .-+...+
T Consensus 185 ~i~~~l~~--~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~ 257 (368)
T 1mc0_A 185 QVAKNLFT--HLDDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHVA 257 (368)
T ss_dssp HHHHHHHH--TTTCHHHHHHHHHHHHHHHHTEEEEEEEEECS---SSEEEEEETTEECCCSTTCCEECTTS--HHHHHHH
T ss_pred HHHHHHHh--cccCHHHHHHHHHHHHHHHhcccEEEEEEEeC---CceEEEEeccccccccccceeecCCC--ceeeeeh
Confidence 34445555 4 489999999999999999999999999998 566666554322 345566777542 3456677
Q ss_pred hcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEc-CCCCcceeEEEEeecCC
Q 001353 295 KQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN-SKDSMKLWGLVVCHHTS 373 (1093)
Q Consensus 295 ~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~-~~~~~~LWGl~~~h~~~ 373 (1093)
..++...|+|+...|.- +++......+.+++.|++||+.+ | ++||.|..+++.
T Consensus 258 ~~~~~~~i~d~~~~~~~----------------------~~~~~~~~~~~~~s~l~vPl~~~~~----~~iGvl~l~~~~ 311 (368)
T 1mc0_A 258 TTGQILNIPDAYAHPLF----------------------YRGVDDSTGFRTRNILCFPIKNENQ----EVIGVAELVNKI 311 (368)
T ss_dssp HHCCCEEESCSTTCTTC----------------------CCTTHHHHTCCCCCEEEEEEECTTS----CEEEEEEEEEET
T ss_pred hhCCEEEecCcccCccc----------------------chhhhhccCCccceEEEEeeECCCC----cEEEEEEEEECC
Confidence 88888899998765432 11222234456799999999984 7 999999999998
Q ss_pred CC-CCCchHHHHHHHHHHHHHHHHHH
Q 001353 374 PR-YIPFPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 374 p~-~~~~~~r~~~~~l~~~~~~~l~~ 398 (1093)
++ .|+..++.+++.++.++++.|..
T Consensus 312 ~~~~f~~~d~~ll~~la~~~a~ai~n 337 (368)
T 1mc0_A 312 NGPWFSKFDEDLATAFSIYCGISIAH 337 (368)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 75 79999999999999999999864
No 145
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.61 E-value=2.6e-08 Score=102.60 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEE
Q 001353 615 SVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVEL 694 (1093)
Q Consensus 615 ~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~ 694 (1093)
+..+.+..+++++++||+++|.+|+|+++|++++++||++.++++|+++. +++++.... ..+..+.......
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~-~~~~~~~~~-------~~~~~~~~~~~~~ 148 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA-QLINGFNFL-------RWLESEPQDSHNE 148 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGG-GTSTTCCHH-------HHHHTCCCSCEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHH-HHhCCCCHH-------HHHhcCCCCCcce
Confidence 34467889999999999999999999999999999999999999999998 777664322 2232222111222
Q ss_pred EEEEeeeccCCcEEEEEEEEEEeecCCCC----EEEEEEEEEecchhH
Q 001353 695 KLRKFELQKQHSVVYILVNACTSRDYKNN----VKGVCFVGQDITHEK 738 (1093)
Q Consensus 695 ~l~~~~~~kdG~~~~v~v~~~pi~d~~g~----v~gv~~v~~DITerK 738 (1093)
.+. .+|. ++.++..|+++.+|+ +.|++.+++|||+++
T Consensus 149 ~~~-----~~g~--~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 149 HVV-----INGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp EEE-----ETTE--EEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred EEE-----ECCe--EEEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 222 1453 467788899876665 788888999999976
No 146
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.58 E-value=1.7e-07 Score=88.92 Aligned_cols=90 Identities=10% Similarity=0.109 Sum_probs=68.6
Q ss_pred HHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhC------------CCcchhccccCCCc---------------c
Q 001353 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTG------------WMRHEVIGITGQGT---------------E 801 (1093)
Q Consensus 749 ~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G------------~~~eEliG~~~~~~---------------~ 801 (1093)
.+++.+++++++ ||+++|.+|+|+++|+++++++| |++++++|..-... .
T Consensus 5 ~rl~~il~~~~~---gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 81 (121)
T 4hi4_A 5 ARIASALDNVSA---NVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNPAHQRHLLANLTG 81 (121)
T ss_dssp HHHHHHHTTSSS---EEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSSHHHHHHHHHHCSS
T ss_pred HHHHHHHhcCCc---cEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCCHHHHHHHHhCcCC
Confidence 568899999998 99999999999999999999996 88899998111000 0
Q ss_pred ceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccC
Q 001353 802 NFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPD 844 (1093)
Q Consensus 802 ~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~ 844 (1093)
.....+ ..+|+ ++.++..|+.|.+|++.|++++++|||++
T Consensus 82 ~~~~~~-~~~~~--~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 82 VHKAEL-NLGGR--RFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp CEEEEE-EETTE--EEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred CcEEEE-EECCE--EEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 111122 23454 45788999999999999999999999984
No 147
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.58 E-value=2.6e-07 Score=81.14 Aligned_cols=95 Identities=20% Similarity=0.352 Sum_probs=69.9
Q ss_pred cCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccCCc
Q 001353 627 ATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706 (1093)
Q Consensus 627 ~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG~ 706 (1093)
++++|+++|.+|+|+++|+++++++|++.++++|+++. ++ +.... ....+...+..+... ++.. .+++
T Consensus 1 ~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~-~~--~~~~~-~~~~~~~~~~~~~~~--~~~~------~~~~ 68 (96)
T 3a0s_A 1 METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLK-DL--PDFEE-IGSVAESVFENKEPV--FLNF------YKFG 68 (96)
T ss_dssp CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-GS--TTCHH-HHHHHHHHHHHTCCE--EEEE------EEET
T ss_pred CCceEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHH-HC--cchHH-HHHHHHHHhccCCeE--EEEE------EcCC
Confidence 47899999999999999999999999999999999988 66 33332 333344444333322 2222 1345
Q ss_pred EEEEEEEEEEeecCCCC-EEEEEEEEEe
Q 001353 707 VVYILVNACTSRDYKNN-VKGVCFVGQD 733 (1093)
Q Consensus 707 ~~~v~v~~~pi~d~~g~-v~gv~~v~~D 733 (1093)
.+|+.++..|+.+.+|. +.|++++++|
T Consensus 69 ~~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 69 ERYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp TEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred cEEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 57999999999988665 6799998887
No 148
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=98.57 E-value=3.5e-07 Score=86.28 Aligned_cols=88 Identities=14% Similarity=0.273 Sum_probs=73.4
Q ss_pred HHHhcCCCCCceEEecC---CCcEeechhhhHHHhCCCcchhcccc------------------------CCCccceeeE
Q 001353 754 IIQSVNPLIPPIFASDE---NACCSEWNAAMEKVTGWMRHEVIGIT------------------------GQGTENFPFG 806 (1093)
Q Consensus 754 i~~~~~~li~~I~~~D~---~g~i~~~N~a~~~l~G~~~eEliG~~------------------------~~~~~~~e~~ 806 (1093)
.+++++. +++++|. +|+++++|+++.+++|++.++++|.. .......++.
T Consensus 24 ~~~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T 2l0w_A 24 KFEGQSR---KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIA 100 (138)
T ss_dssp HHTTTTS---EEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHhcCCC---CEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEE
Confidence 3444555 8999999 99999999999999999998887732 1122344667
Q ss_pred EEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccC
Q 001353 807 FFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPD 844 (1093)
Q Consensus 807 ~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~ 844 (1093)
+.+++|+.+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 101 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 101 FYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred EECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 78899999999999999999999999999999999974
No 149
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.57 E-value=2e-07 Score=104.16 Aligned_cols=122 Identities=11% Similarity=0.083 Sum_probs=101.4
Q ss_pred ccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCC---ceEEEEEEEeeeccCC
Q 001353 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED---KNVELKLRKFELQKQH 705 (1093)
Q Consensus 629 ~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~---~~~e~~l~~~~~~kdG 705 (1093)
..+...|.+|+++++|+++..++||.++|++|+++. +++||+|.+.+.+.+..+++++.. ...++++ .++||
T Consensus 175 ~Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~-~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~----~~kdG 249 (317)
T 4dj3_A 175 IFTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSIL-TYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRF----CTQNG 249 (317)
T ss_dssp EEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEE----ECTTS
T ss_pred ceEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHH-HeECHHHHHHHHHHHHHHHHcCCCccccceEEEE----EccCC
Confidence 356778999999999999999999999999999999 999999999999999998886554 3455555 47899
Q ss_pred cEEEEEEEEEEeecC-CCCEEEEEEEEE--------e-----cchhHHHHHHHHHHHHHHHHHH
Q 001353 706 SVVYILVNACTSRDY-KNNVKGVCFVGQ--------D-----ITHEKVLMDKFIRLQGDYEAII 755 (1093)
Q Consensus 706 ~~~~v~v~~~pi~d~-~g~v~gv~~v~~--------D-----ITerK~aEe~L~~se~~lr~i~ 755 (1093)
+.+|+..++.+++|. .+++..+++.-+ | +++++..++++++++++.+.++
T Consensus 250 ~~vwvet~~~~~~np~s~~~e~II~~h~v~~~p~~~dvf~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (317)
T 4dj3_A 250 EYVILDSSWSSFVNPWSRKVSFIIGRHKVRTSPLNEDVFATRIKKAASNDKDIAELQEQIHKLL 313 (317)
T ss_dssp CEEEEEEEEEEEECSSSCCEEEEEEEEEECCCCSSSCTTCCCCCCCSSCCHHHHHHHHHHHHHT
T ss_pred CEEEEEEEEEEEECCCCCcccEEEEEEEeccCCCCCCcccCCccchhccchhHHHHHHHHHHHh
Confidence 999999999999986 466667777766 4 4556778888888888877664
No 150
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.52 E-value=3.4e-07 Score=82.25 Aligned_cols=81 Identities=15% Similarity=0.298 Sum_probs=68.9
Q ss_pred ceEEecC---CCcEeechhhhHHHhCCCcchhcccc------------------------CCCccceeeEEEccCCcEEE
Q 001353 764 PIFASDE---NACCSEWNAAMEKVTGWMRHEVIGIT------------------------GQGTENFPFGFFNRQGQFVE 816 (1093)
Q Consensus 764 ~I~~~D~---~g~i~~~N~a~~~l~G~~~eEliG~~------------------------~~~~~~~e~~~~~kdG~~~~ 816 (1093)
+|+++|. +|+++++|+++++++|++.++++|.. .......++.+.+++|+.+|
T Consensus 3 ~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (110)
T 1byw_A 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFL 82 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEE
T ss_pred CEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEEE
Confidence 6888886 59999999999999999999988732 11223445667899999999
Q ss_pred EEEEEeEeecCCCcEEEEEEEEeecccC
Q 001353 817 VALTASRRTDAEGKVIGCFCFMQILVPD 844 (1093)
Q Consensus 817 v~~~~~~i~d~~G~v~g~i~~~~DITe~ 844 (1093)
+.++..|+.+.+|.+.+++++++|||++
T Consensus 83 ~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 83 CLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 9999999999999999999999999985
No 151
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.50 E-value=1.8e-07 Score=108.74 Aligned_cols=92 Identities=14% Similarity=0.158 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHHHHHHcCCC--CCCeEEEEEEeC-CccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCCCCCCc
Q 001353 974 DRIRLQLVLSDFLHCVVRHAPS--PDGWVEIKVLPG-LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPE 1050 (1093)
Q Consensus 974 D~~~L~qVl~nLl~NAik~t~~--~~g~I~I~v~~~-~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~~~~Gt 1050 (1093)
+...+..++.||++||++|+.+ .+|.|.|++... ++ .+.++|.|+|+|+|+. ....+.
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~---------~l~i~V~D~G~g~~~~----------~~~~~~ 354 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDG---------NVRASVIDRGQWKDHR----------DGARGR 354 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTS---------EEEEEEEESCBC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCC---------EEEEEEEECCCCCCCC----------CCCCCC
Confidence 3567999999999999999732 258999998876 45 8999999999999986 223567
Q ss_pred cchHHHHHHHHHHcCCEEEEEeeCCeeEEEEEEeecCC
Q 001353 1051 GLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELKTR 1088 (1093)
Q Consensus 1051 GLGL~ivr~ive~hgG~I~v~S~~ggt~F~v~LPlp~~ 1088 (1093)
|+||+|++.+++ ++.+.+.++|+++++.+|++.+
T Consensus 355 G~GL~lv~~l~~----~~~~~~~~~G~~v~~~~~~~~~ 388 (399)
T 3ke6_A 355 GRGLAMAEALVS----EARIMHGAGGTTATLTHRLSRP 388 (399)
T ss_dssp --CHHHHHTTSS----EEEEEEETTEEEEEEEEECEEE
T ss_pred CcHHHHHHHHHH----heeeEECCCcEEEEEEEEcCCc
Confidence 999999988776 5567777888999999998654
No 152
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.50 E-value=2.9e-07 Score=87.63 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=74.2
Q ss_pred HHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEee
Q 001353 621 VRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFE 700 (1093)
Q Consensus 621 ~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~ 700 (1093)
..+++++++|++++|.+|+|++||..++++.|+++++++|+++++.+.+......+...+.+.+..+. ....+...
T Consensus 20 ~~~ld~l~~Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v--- 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT--- 95 (125)
T ss_dssp HHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE---
T ss_pred HHHHhccCceEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE---
Confidence 45799999999999999999999999999999999999999998334444555555555555554343 23333332
Q ss_pred eccCCcEEEEEEEEEEeecCCCCEEEEEE
Q 001353 701 LQKQHSVVYILVNACTSRDYKNNVKGVCF 729 (1093)
Q Consensus 701 ~~kdG~~~~v~v~~~pi~d~~g~v~gv~~ 729 (1093)
.+++|.+.++.++ +.++++|...+++.
T Consensus 96 ~~~~~~p~~v~i~--l~~~~~~~~~~i~v 122 (125)
T 1nwz_A 96 FDYQMTPTKVKVH--MKKALSGDSYWVFV 122 (125)
T ss_dssp ECTTSCCEEEEEE--EEECSSSSEEEEEE
T ss_pred EcCCCCEEEEEEE--EEEcCCCCEEEEEE
Confidence 3567885555554 45567788777654
No 153
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.49 E-value=4.4e-07 Score=87.77 Aligned_cols=88 Identities=15% Similarity=0.113 Sum_probs=70.1
Q ss_pred HHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc------cc----------------CCC-------
Q 001353 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------IT----------------GQG------- 799 (1093)
Q Consensus 749 ~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG------~~----------------~~~------- 799 (1093)
..++.+++++++ +|+++|.+|+|+++|+++++++||++++++| .. ...
T Consensus 7 ~~l~~i~~~~~d---~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (129)
T 3mfx_A 7 ETIELFIQHLTE---AMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQ 83 (129)
T ss_dssp HHHHHHHTTCSS---EEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSC
T ss_pred HHHHHHHhcCCc---eEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccC
Confidence 457889999988 8999999999999999999999999999999 00 000
Q ss_pred ccceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecc
Q 001353 800 TENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 842 (1093)
Q Consensus 800 ~~~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DIT 842 (1093)
....++.+.++||+.+|+.++++++.+ +... ++++++|..
T Consensus 84 ~~~~E~~~~rkdG~~~~velsis~i~~--~~~~-~v~~~~~~~ 123 (129)
T 3mfx_A 84 HPAQETTLICASGKAKDVELSISYIPG--HEPM-FVMVMHDLE 123 (129)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEECS--SSCE-EEEEEEEC-
T ss_pred CCceEEEEEcCCCCEEEEEEEEEEecC--CCcE-EEEEEechh
Confidence 123577889999999999999999883 3333 678888864
No 154
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.49 E-value=2.3e-07 Score=88.52 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=74.1
Q ss_pred HHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeee
Q 001353 622 RLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFEL 701 (1093)
Q Consensus 622 ~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~ 701 (1093)
.+++++++|++++|.+|+|++||..++++.|+++++++|+++++.+.+......+...+.+.+..+. ....+... .
T Consensus 26 ~~ld~l~~GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv---~ 101 (129)
T 1mzu_A 26 AEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFV---F 101 (129)
T ss_dssp TTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEE---E
T ss_pred HHHhccCceEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE---E
Confidence 3699999999999999999999999999999999999999998334444555555666666555444 23333332 2
Q ss_pred ccCCcEEEEEEEEEEeecCCCCEEEEEE
Q 001353 702 QKQHSVVYILVNACTSRDYKNNVKGVCF 729 (1093)
Q Consensus 702 ~kdG~~~~v~v~~~pi~d~~g~v~gv~~ 729 (1093)
+++|.++.+.++ ..++.+|...+++.
T Consensus 102 ~~~~~p~~v~i~--l~~~~~~~~~~i~v 127 (129)
T 1mzu_A 102 DFQMAPVRVQIR--MQNAGVPDRYWIFV 127 (129)
T ss_dssp ECSSCEEEEEEE--EEECSSTTEEEEEE
T ss_pred cCCCCEEEEEEE--EEEcCCCCEEEEEE
Confidence 567885555554 45567788777653
No 155
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=98.46 E-value=5e-07 Score=88.54 Aligned_cols=140 Identities=11% Similarity=0.014 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccC-CccCCCCchHHHHHhHhcCCeEEEecCC
Q 001353 228 GGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLG-IHFPANDIPQAARFLFKQNRVRMICDCH 306 (1093)
Q Consensus 228 ~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg-~~~p~~dip~~~r~l~~~~~~r~i~d~~ 306 (1093)
+.+++++++.+++.+++++++|++.||-+++++.-.+.+-.- ..-+.+-. .++|..+ .-....+..++..++.|+.
T Consensus 4 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~l~~~~~~g-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~ 80 (153)
T 2w3g_A 4 DPDLEATLRAIVHSATSLVDARYGAMEVHDRQHRVLHFVYEG-IDEETVRRIGHLPKGL--GVIGLLIEDPKPLRLDDVS 80 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTCCEEEEEEES-CCHHHHHHHCSCCCSC--THHHHHHHSCSCEEESSGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEEECCCCCEEEEEEec-CCHHHHHhhccCCCCC--CHHHHHHhcCCcEEecCcc
Confidence 457999999999999999999999999999664333333221 11111111 2444322 2344566777777888865
Q ss_pred CCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCC-CCCCchHHHHH
Q 001353 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSP-RYIPFPLRYAC 385 (1093)
Q Consensus 307 ~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p-~~~~~~~r~~~ 385 (1093)
..+.-. . .+. ...++++.+++||+.+| +++|.|.+++..+ +.|+..++.++
T Consensus 81 ~~~~~~------------------~-~~~-----~~~~~~s~l~vPl~~~~----~~~Gvl~l~~~~~~~~f~~~~~~~l 132 (153)
T 2w3g_A 81 AHPASI------------------G-FPP-----YHPPMRTFLGVPVRVRD----ESFGTLYLTDKTNGQPFSDDDEVLV 132 (153)
T ss_dssp GSTTCC------------------C-CCT-----TCCCCCCEEEEEEEETT----EEEEEEEEEEETTSCCCCHHHHHHH
T ss_pred cCchhc------------------C-CCC-----cCCCCCeEEEeeEEECC----EEEEEEEEeeCCCCCCCCHHHHHHH
Confidence 443210 0 010 34588999999999888 9999999999987 89999999999
Q ss_pred HHHHHHHHHHHHH
Q 001353 386 EFLVQAFSLQLYM 398 (1093)
Q Consensus 386 ~~l~~~~~~~l~~ 398 (1093)
+.++.+++..|..
T Consensus 133 ~~la~~~a~ai~~ 145 (153)
T 2w3g_A 133 QALAAAAGIAVAN 145 (153)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998854
No 156
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.45 E-value=7.3e-07 Score=100.68 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=88.9
Q ss_pred CccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCC-----ceEEEEEEEeeec
Q 001353 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED-----KNVELKLRKFELQ 702 (1093)
Q Consensus 628 ~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~-----~~~e~~l~~~~~~ 702 (1093)
.+.++..|.+|+++|+|+++..++||+++|++|+++. +++||+|.+.+.+.+..+++.+.. ...++++ .+
T Consensus 154 ~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~-~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~----~~ 228 (339)
T 3rty_A 154 PKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIM-DFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRF----LI 228 (339)
T ss_dssp CEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGG-GGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEE----EC
T ss_pred ceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHH-HEECHHHHHHHHHHHHHHHHcCCcccccccceEEEE----Ec
Confidence 4678888999999999999999999999999999999 999999999999888888864443 2345555 47
Q ss_pred cCCcEEEEEEEEEEeecCC-CCEEEEEEEEEecchh
Q 001353 703 KQHSVVYILVNACTSRDYK-NNVKGVCFVGQDITHE 737 (1093)
Q Consensus 703 kdG~~~~v~v~~~pi~d~~-g~v~gv~~v~~DITer 737 (1093)
+||+.+|+..++.+++|.. +++..++++.+.|+..
T Consensus 229 kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p 264 (339)
T 3rty_A 229 QNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGP 264 (339)
T ss_dssp TTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECC
T ss_pred cCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCC
Confidence 8999999999999999875 5677888888877754
No 157
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.42 E-value=8.9e-07 Score=82.23 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=69.0
Q ss_pred HHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc------c---------------cCCCccceeeEEEcc
Q 001353 752 EAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------I---------------TGQGTENFPFGFFNR 810 (1093)
Q Consensus 752 r~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG------~---------------~~~~~~~~e~~~~~k 810 (1093)
..+++++++ +|+++|.+|+|+++|+++++++|++.++++| . .+......+..+. +
T Consensus 10 ~~il~~~~~---~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 85 (115)
T 3b33_A 10 SAILNNMVT---ATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASLDLALLTQPLQSGQSITDSDVTFV-V 85 (115)
T ss_dssp HHHHHHCSS---EEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEECCTHHHHHHHHHCCCEEEEEEEEE-E
T ss_pred HHHHhhcCc---eEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccchhhHHHHHHHHcCCcccCCceEEe-c
Confidence 458899988 8999999999999999999999999999988 0 0111122344555 7
Q ss_pred CCcEEEEEEEEeEeecCCCcEEEEEEEEeecc
Q 001353 811 QGQFVEVALTASRRTDAEGKVIGCFCFMQILV 842 (1093)
Q Consensus 811 dG~~~~v~~~~~~i~d~~G~v~g~i~~~~DIT 842 (1093)
+|+.+|+.++..|+.+ +|. .+++.+++||+
T Consensus 86 ~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 86 DGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp TTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred CCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 8999999999999999 887 68999999985
No 158
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.39 E-value=6.7e-07 Score=89.05 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=74.0
Q ss_pred HHHHHHHHhcCCCCCceEEecCCCcEeechhh---hHHHhCCCcchhcc---------------------ccCCCcccee
Q 001353 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAA---MEKVTGWMRHEVIG---------------------ITGQGTENFP 804 (1093)
Q Consensus 749 ~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a---~~~l~G~~~eEliG---------------------~~~~~~~~~e 804 (1093)
..+++++++++. +|+++|.+|+|++||++ +++++| ..++++| ...+.....+
T Consensus 19 ~~l~~IL~~~~~---gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~~~~~v~~i~~~l~~g~~~~~~ 94 (151)
T 2qkp_A 19 EQANLILNHLPL---EITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPKVLDKVKKVFELLRNGQRDKVN 94 (151)
T ss_dssp HHHHHHHHHSSS---EEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHHHHHHHHHHHHHHHTTSBSEEE
T ss_pred HHHHHHHHhCCC---ceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHHHHHHHHHHHHHHHcCCccEEE
Confidence 347889999998 99999999999999999 999999 6678999 1112222333
Q ss_pred eEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHHHH
Q 001353 805 FGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALE 850 (1093)
Q Consensus 805 ~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e~e 850 (1093)
+.+...+ ..+++.++..|++|++|++.|++.+++|||+-++.+.+
T Consensus 95 ~~~~~~~-~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~~ 139 (151)
T 2qkp_A 95 MWFQSER-LGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSE 139 (151)
T ss_dssp EEEEETT-TTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC
T ss_pred EEEecCC-CCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhhh
Confidence 3332222 12567888999999999999999999999987655543
No 159
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=98.37 E-value=4.1e-06 Score=86.42 Aligned_cols=143 Identities=11% Similarity=0.055 Sum_probs=82.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCccccceeeeeHHHHHHHH
Q 001353 864 KELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNILDAV 943 (1093)
Q Consensus 864 ~~la~isHELrnPLt~I~g~~~LL~~~~l~~~~~~~l~~i~~~~~rl~~lI~dLdlsrie~g~~~l~~~~v~L~~ll~~v 943 (1093)
+.++..+||..|-|++|.|++++=+ -++..+|+..+....+.... +.++. ...+..+
T Consensus 23 ~~LR~qrHdf~NkLqvI~GLlql~~----ydea~~yI~~~~~~~q~~~~------~~~i~-------------~P~la~l 79 (192)
T 1ixm_A 23 HLLGHSRHDWMNKLQLIKGNLSLQK----YDRVFEMIEEMVIDAKHESK------LSNLK-------------TPHLAFD 79 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHH------HHTTT-------------CHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHH------HHhCC-------------CHHHHHH
Confidence 5577889999999999999999733 35667777777555554443 12211 1123333
Q ss_pred HHHHHHHhccCCeEE-EeecCCCccceEEEecHHHHHHHHHHHHHHHHHc--CCCCCCeEEEEEEeC--CccccCCCcee
Q 001353 944 VSQVMVLLRDKNLHL-LHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRH--APSPDGWVEIKVLPG--LKLIKDADQFV 1018 (1093)
Q Consensus 944 ~~~~~~~~~~~~i~l-~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~--t~~~~g~I~I~v~~~--~~~~~~~~~~~ 1018 (1093)
+-.....+++.++.+ .++.+..++. .+..+..++ +.+.||+.. .+...+.|.|++... ++
T Consensus 80 Ll~K~~~a~e~~i~lev~~~~s~l~~-----~~~~lgnLi-~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~--------- 144 (192)
T 1ixm_A 80 FLTFNWKTHYMTLEYEVLGEIKDLSA-----YDQKLAKLM-RKLFHLFDQAVSRESENHLTVSLQTDHPDR--------- 144 (192)
T ss_dssp HHHGGGSCCSSEEEEEEESSCCCCTT-----THHHHHHHH-HHHHHHHHHHBCTTSCCEEEEEEECCCSSS---------
T ss_pred HHHHHHHhccCCeEEEEecCccccCC-----CcHHHHHHH-HHHHHHHHhhhccCCCCeEEEEEEEecCCC---------
Confidence 332223333444444 3343444432 334443333 223445544 333367899998876 55
Q ss_pred EEEEEEecCCCCCChhhHhhhccCCC
Q 001353 1019 HVQFRLTHPGEGIPSHLIEDMYNGRN 1044 (1093)
Q Consensus 1019 ~v~l~V~DnG~GIp~e~~~~IFe~F~ 1044 (1093)
.+.|.|.|+|++|+++.+++||++.+
T Consensus 145 ~l~i~V~d~G~~i~~e~~~~if~~~~ 170 (192)
T 1ixm_A 145 QLILYLDFHGAFADPSAFDDIRQNGY 170 (192)
T ss_dssp SCEEEEEEESCBSCGGGCC-------
T ss_pred EEEEEEEeCCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999998644
No 160
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.37 E-value=5.9e-06 Score=95.62 Aligned_cols=141 Identities=16% Similarity=0.125 Sum_probs=106.2
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCeEEEe-cCC
Q 001353 228 GGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMIC-DCH 306 (1093)
Q Consensus 228 ~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~-d~~ 306 (1093)
+.+++++++.+++.+++++++||+.||-+++++. +........+ .+.-+.++|.. ..-+...+..++...|+ |+.
T Consensus 212 ~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~l~~~~~~~~-~~~~~~~~~~~--~~~~~~v~~~~~~~~i~~d~~ 287 (398)
T 1ykd_A 212 SLDLEDTLKRVMDEAKELMNADRSTLWLIDRDRH-ELWTKITQDN-GSTKELRVPIG--KGFAGIVAASGQKLNIPFDLY 287 (398)
T ss_dssp CCCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTT-EEEEEEECSS-SCEEEEEEETT--SHHHHHHHHHCCCEEECSCGG
T ss_pred cCCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCC-EEEEEEecCC-CceeeeeccCC--CchhhHHhccCCeEEeccccc
Confidence 3489999999999999999999999999999874 4444443221 12233355543 23345677788888888 876
Q ss_pred CCCcccccccccCCCccccCccccCCChhH--HHHHHhcCceeEEEEEEE-EcCCCCcceeEEEEeecCC----------
Q 001353 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCH--LQYMTNMGSIASLVMAVI-INSKDSMKLWGLVVCHHTS---------- 373 (1093)
Q Consensus 307 ~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h--~~yl~n~~v~asl~~~i~-~~~~~~~~LWGl~~~h~~~---------- 373 (1093)
..|-- ..+ ..-...++++|.|+|||+ .+| ++||.|..+++.
T Consensus 288 ~~~~~----------------------~~~~~~~~~~~~~~~s~l~vPl~~~~~----~~iGvl~l~~~~~~~~~~~~~~ 341 (398)
T 1ykd_A 288 DHPDS----------------------ATAKQIDQQNGYRTCSLLCMPVFNGDQ----ELIGVTQLVNKKKTGEFPPYNP 341 (398)
T ss_dssp GSTTC----------------------HHHHHHHHHHTCCCCCEEEEEEECSSS----CEEEEEEEEEECCSSCCCCCCG
T ss_pred cCccc----------------------CcccchhhhcCCeeeeEEEEeeecCCC----CEEEEEEEEecCCccccccccc
Confidence 54432 233 222346778999999999 477 999999999987
Q ss_pred ----------CCCCCchHHHHHHHHHHHHHHHHHH
Q 001353 374 ----------PRYIPFPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 374 ----------p~~~~~~~r~~~~~l~~~~~~~l~~ 398 (1093)
|+.|+.....+++.++.++++.|..
T Consensus 342 ~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~n 376 (398)
T 1ykd_A 342 ETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQN 376 (398)
T ss_dssp GGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999854
No 161
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=98.36 E-value=6.8e-06 Score=81.48 Aligned_cols=128 Identities=16% Similarity=0.075 Sum_probs=99.3
Q ss_pred CHHHHHHHHHHHHHhhhCCCeEEEEeecCCCC---ceEEEEe-cCCCCCCccCCccCCCCchHHHHHhHhcCCeEEEecC
Q 001353 230 DIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH---GEVVSEI-RRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDC 305 (1093)
Q Consensus 230 ~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~---G~vvaE~-~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~ 305 (1093)
+++++++.+++.+++++|+|+..||-.+++.. |+...++ .....+.+.|.+||... + -....+..++.-+|+|+
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~-g-~~g~v~~~g~~v~v~d~ 78 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQD-N-AIGQAFRDRAPRRLDVL 78 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSS-S-HHHHHHHHCCCEEESCC
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCC-C-HHHHHhhcCceEEecCc
Confidence 45789999999999999999999999988741 4444443 34445567888887543 2 33445667777778887
Q ss_pred CCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecC-CCCCCCchHHHH
Q 001353 306 HAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHT-SPRYIPFPLRYA 384 (1093)
Q Consensus 306 ~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~-~p~~~~~~~r~~ 384 (1093)
...| |++|-|++||..+| +.-|.|..++. .|+.+......+
T Consensus 79 ~~d~----------------------------------~~~s~l~vPL~~~~----~~~GvL~l~~~~~~~~f~~~d~~l 120 (149)
T 2vjw_A 79 DGPG----------------------------------LGGPALVLPLRATD----TVAGVLVAVQGSGARPFTAEQLEM 120 (149)
T ss_dssp CTTS----------------------------------CEEEEEEEEEEETT----EEEEEEEEEEETTCCCCCHHHHHH
T ss_pred ccCC----------------------------------CCCeEEEEEEccCC----eEEEEEEEeeCCCCCCCCHHHHHH
Confidence 5322 68999999999888 99999999988 799999999999
Q ss_pred HHHHHHHHHHHHH
Q 001353 385 CEFLVQAFSLQLY 397 (1093)
Q Consensus 385 ~~~l~~~~~~~l~ 397 (1093)
++.++.+.++.|.
T Consensus 121 l~~lA~~aa~al~ 133 (149)
T 2vjw_A 121 MTGFADQAAVAWQ 133 (149)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998884
No 162
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.34 E-value=7e-07 Score=83.94 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=55.0
Q ss_pred HHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc-------------------ccCCCccceeeEEEccCCc
Q 001353 753 AIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-------------------ITGQGTENFPFGFFNRQGQ 813 (1093)
Q Consensus 753 ~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG-------------------~~~~~~~~~e~~~~~kdG~ 813 (1093)
.+++++++ +|++.|.+|+++++|+++++++||+++|++| .........++++.++||+
T Consensus 3 ~lle~~~d---~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~~~~~~~~~e~r~~~kdG~ 79 (111)
T 2vlg_A 3 FPLQTKTD---IHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFYNEHHLMPCTFRFIKKDHT 79 (111)
T ss_dssp ------CC---EEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHCSCCSSCEEEEEECTTSC
T ss_pred chhhcCCC---EEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHhccCCCccEEEEEEcCCCC
Confidence 46677777 7999999999999999999999999999999 1122234568899999999
Q ss_pred EEEEEEEEeEeecCCCcE
Q 001353 814 FVEVALTASRRTDAEGKV 831 (1093)
Q Consensus 814 ~~~v~~~~~~i~d~~G~v 831 (1093)
++|+..++.++.+.++.-
T Consensus 80 ~~wve~~~~~v~~~~~~~ 97 (111)
T 2vlg_A 80 IVWVEAAVEIVTTRAERT 97 (111)
T ss_dssp EEEEEEEEEEC-------
T ss_pred EEEEEEEEEEEecccCCc
Confidence 999999999999876543
No 163
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.32 E-value=1.9e-07 Score=87.76 Aligned_cols=92 Identities=9% Similarity=-0.064 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhccccCCCcc----------------ceeeEEEcc
Q 001353 747 LQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGITGQGTE----------------NFPFGFFNR 810 (1093)
Q Consensus 747 se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG~~~~~~~----------------~~e~~~~~k 810 (1093)
++++|+.+++++++ +|+++|.+|+++++|+++++++|+++++++|..-.... ........+
T Consensus 17 ~~~~~~~i~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (125)
T 3fc7_A 17 TRKKFESLVSDSPD---GIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTATRSE 93 (125)
T ss_dssp ---------CCSCC---EEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHhcCCC---eEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeEEeE
Confidence 77889999999998 89999999999999999999999999999981111000 000011344
Q ss_pred CCc-EEEEEEEEeEeecCCCcEEEEEEEEeecc
Q 001353 811 QGQ-FVEVALTASRRTDAEGKVIGCFCFMQILV 842 (1093)
Q Consensus 811 dG~-~~~v~~~~~~i~d~~G~v~g~i~~~~DIT 842 (1093)
+|. .+|+.++..|+.+. |...|++++++|||
T Consensus 94 ~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 94 DAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp EEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred cCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 555 78899999997765 66678999999997
No 164
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.63 E-value=8.6e-08 Score=107.07 Aligned_cols=119 Identities=16% Similarity=0.146 Sum_probs=84.8
Q ss_pred HHHHhcCccEEEECCCCcEEEecHHHHHhcC---CCccccCCCCccccccccc---cH--HHHHHHHHHHHcC-CCCceE
Q 001353 622 RLIETATAPIFGVDSSGTINGWNAKVAELTG---LPASEAMGKSLIDEVVHEE---SQ--GAVENLICRALLG-EEDKNV 692 (1093)
Q Consensus 622 ~lie~~~~~I~~~D~dG~I~~~N~~~~~llG---~~~eeliG~~~~~~lv~~~---~~--~~~~~~l~~~l~g-~~~~~~ 692 (1093)
.+++++++||+++|.+|+|+++|++++++|| ++ ++++|+++. ++++.. .. ..+...+..++.+ +.....
T Consensus 174 ~~~~~~~dGIivvD~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~-el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ 251 (305)
T 2ykf_A 174 RSSPRAGDGFIRLDVDGVVSYASPNALSAYHRMGLT-TELEGVNLI-DATRPLISDPFEAHEVDEHVQDLLAGDGKGMRM 251 (305)
Confidence 3567999999999999999999999999985 44 788999998 666543 10 1222333334443 322111
Q ss_pred EEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHH
Q 001353 693 ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYE 752 (1093)
Q Consensus 693 e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se~~lr 752 (1093)
++. ...+++.++..|+++ +|+..|++.+++|||+.++.|++|+.-....+
T Consensus 252 ei~---------~~~~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL~~K~~~Ir 301 (305)
T 2ykf_A 252 EVD---------AGGATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRALISKDATIR 301 (305)
Confidence 111 124678888999987 57888999999999999999999876554443
No 165
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.27 E-value=2.3e-06 Score=83.39 Aligned_cols=78 Identities=19% Similarity=0.155 Sum_probs=66.7
Q ss_pred CceEEec---CCCcEeechhhhHHHhCCCcchhccc------cC---------------------------CCccceeeE
Q 001353 763 PPIFASD---ENACCSEWNAAMEKVTGWMRHEVIGI------TG---------------------------QGTENFPFG 806 (1093)
Q Consensus 763 ~~I~~~D---~~g~i~~~N~a~~~l~G~~~eEliG~------~~---------------------------~~~~~~e~~ 806 (1093)
.+|+++| .+|+|+++|+++++++||++++++|. .. +.....++.
T Consensus 36 ~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 115 (149)
T 3d72_A 36 VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAEVQVEVV 115 (149)
T ss_dssp SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCceEEEEE
Confidence 3899999 79999999999999999999999981 11 112344667
Q ss_pred EEccCCcEEEEEEEEeEeecCCCcEEEEEEEEee
Q 001353 807 FFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQI 840 (1093)
Q Consensus 807 ~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~D 840 (1093)
+.+++|+.+|+.++..|+.+.+|++.+++++++|
T Consensus 116 ~~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 116 NFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp EECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred EECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 7899999999999999999999999999999876
No 166
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.24 E-value=7.1e-06 Score=102.26 Aligned_cols=140 Identities=11% Similarity=0.162 Sum_probs=108.6
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCC--CCccCCccCCCCchHHHHHhHhcCCeEEEecCC
Q 001353 229 GDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL--EPYLGIHFPANDIPQAARFLFKQNRVRMICDCH 306 (1093)
Q Consensus 229 ~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~--~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~ 306 (1093)
.+++++++.+++.+++++|+||+.||-+++ |+.+..+..... +...+..+|... .-+...+..++.-.|+|+.
T Consensus 195 ~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--gi~g~v~~~g~~v~i~d~~ 269 (691)
T 3ibj_A 195 DDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHVATTGQILNIPDAY 269 (691)
T ss_dssp SCTTTHHHHHHHHHHHHHTEEEEEEEEECS---SEEEEECCSSSCCSSCCCEEEEETTS--HHHHHHHHHCSCEEESCST
T ss_pred ccHHHHHHHHHHHHHHHhCCCeEEEEEEeC---CeEEEEeecCCcccccccceeccCCC--CHHHHHHHhCCEEEecCcc
Confidence 589999999999999999999999999998 788888776544 234456666542 3456677888888999887
Q ss_pred CCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEc-CCCCcceeEEEEeecCCCC-CCCchHHHH
Q 001353 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIIN-SKDSMKLWGLVVCHHTSPR-YIPFPLRYA 384 (1093)
Q Consensus 307 ~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~-~~~~~~LWGl~~~h~~~p~-~~~~~~r~~ 384 (1093)
..|-- ++.......++++|-|++||+.+ | ++||.|..+++.++ .|+.....+
T Consensus 270 ~d~~~----------------------~~~~~~~~g~~~rS~L~vPL~~~~g----~viGVL~l~~~~~~~~f~~~d~~l 323 (691)
T 3ibj_A 270 AHPLF----------------------YRGVDDSTGFRTRNILCFPIKNENQ----EVIGVAELVNKINGPWFSKFDEDL 323 (691)
T ss_dssp TSTTC----------------------------CCSCCCCCEEEEECCCSSS----CCCEEEEEEEESSSSSCCTTTTHH
T ss_pred cCccc----------------------cchhhcccCCeeeeEEEEeEECCCC----CEEEEEEEEECCCCCCCCHHHHHH
Confidence 66431 11222223466899999999987 6 99999999998755 799999999
Q ss_pred HHHHHHHHHHHHHHH
Q 001353 385 CEFLVQAFSLQLYME 399 (1093)
Q Consensus 385 ~~~l~~~~~~~l~~~ 399 (1093)
++.+|.++|+.|...
T Consensus 324 l~~lA~~~aiAIena 338 (691)
T 3ibj_A 324 ATAFSIYCGISIAHS 338 (691)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999643
No 167
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=98.20 E-value=1.3e-05 Score=81.86 Aligned_cols=155 Identities=12% Similarity=0.149 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHhhhCCCeEEEEeecCCCC-ceEEEEec--CCC--C-----CCccCCcc
Q 001353 213 QKLAVSAISRLQALPGG-DIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH-GEVVSEIR--RSD--L-----EPYLGIHF 281 (1093)
Q Consensus 213 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~-G~vvaE~~--~~~--~-----~~~lg~~~ 281 (1093)
...+.++...|.+ +. +++++++.+++.+++++|+||..||-++++.. .+.++... ..+ + ...-+.++
T Consensus 6 l~~L~eis~~l~~--~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3dba_A 6 CNILFELLTEIQD--EAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVF 83 (180)
T ss_dssp HHHHHHHHTTSCS--SSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEE
T ss_pred HHHHHHHHHHHHH--hhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceee
Confidence 3444556666666 77 99999999999999999999999999998754 56665432 122 2 23345566
Q ss_pred CCCCchHHHHHhHhcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCc
Q 001353 282 PANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSM 361 (1093)
Q Consensus 282 p~~dip~~~r~l~~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~ 361 (1093)
|.. .--+..-+..++.-+|+|+...|-- +.........+++|-|++||+.+|
T Consensus 84 ~~~--~gi~g~v~~tg~~v~i~d~~~d~~f----------------------~~~~~~~~~~~~~S~L~vPl~~~~---- 135 (180)
T 3dba_A 84 PLD--IGIAGWVAHTKKFFNIPDVKKNNHF----------------------SDYLDKKTGYTTVNMMAIPITQGK---- 135 (180)
T ss_dssp CTT--SSHHHHHHHHTCCEEESCGGGCTTC----------------------CCHHHHHHCCCCCCEEEEEEEETT----
T ss_pred eCC--CCHHHHHHHhCCEEEecCCCCCccc----------------------ChhhccccCccccEEEEEEeccCC----
Confidence 643 1235566777888889988765431 111222345678999999999988
Q ss_pred ceeEEEEeecCCC-CCCCchHHHHHHHHHHHHHHHHH
Q 001353 362 KLWGLVVCHHTSP-RYIPFPLRYACEFLVQAFSLQLY 397 (1093)
Q Consensus 362 ~LWGl~~~h~~~p-~~~~~~~r~~~~~l~~~~~~~l~ 397 (1093)
++.|.|...+..+ +.++.....+++.+|.+.++.|.
T Consensus 136 ~viGVL~l~n~~~~~~Ft~~d~~lL~~lA~~aa~~i~ 172 (180)
T 3dba_A 136 EVLAVVMALNKLNASEFSKEDEEVFKKYLNFISLVLR 172 (180)
T ss_dssp EEEEEEEEEEESSSSSCCHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999988875 48999999999999999988773
No 168
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.18 E-value=5.4e-06 Score=92.73 Aligned_cols=104 Identities=12% Similarity=0.016 Sum_probs=87.6
Q ss_pred CccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcC-CCCc-eEEEEEEEeeeccCC
Q 001353 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLG-EEDK-NVELKLRKFELQKQH 705 (1093)
Q Consensus 628 ~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g-~~~~-~~e~~l~~~~~~kdG 705 (1093)
...+...|.+|+++++|+++..++||.++|++|+++. +++||+|.+.+.+.+..++++ +... ..++++ .++||
T Consensus 176 ~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~-~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~----~~kdG 250 (320)
T 4dj2_A 176 RIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVL-LFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRF----CARNG 250 (320)
T ss_dssp CEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEE----ECSSS
T ss_pred ceEEEEecCCceEEEcCcceeccCCcChHHHcCCcHH-HhCCHHHHHHHHHHHHHHHhcCCCcccceEEEE----EccCC
Confidence 3467778999999999999999999999999999999 999999999999999998874 3333 235555 47899
Q ss_pred cEEEEEEEEEEeecC-CCCEEEEEEEEEecch
Q 001353 706 SVVYILVNACTSRDY-KNNVKGVCFVGQDITH 736 (1093)
Q Consensus 706 ~~~~v~v~~~pi~d~-~g~v~gv~~v~~DITe 736 (1093)
+.+|+..++.++++. .+++..+++.-+-++.
T Consensus 251 ~~vwvet~~~~~~np~s~~~e~II~~h~v~~g 282 (320)
T 4dj2_A 251 EYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTA 282 (320)
T ss_dssp CEEEEECEEEEEECTTTCSEEEEEEEEEESSC
T ss_pred CEEEEEEEEEEEECCCCCCccEEEEEEEEccC
Confidence 999999999999886 5778888888777665
No 169
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.18 E-value=5e-06 Score=93.36 Aligned_cols=80 Identities=10% Similarity=0.081 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-CC--------
Q 001353 977 RLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-WT-------- 1047 (1093)
Q Consensus 977 ~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~~-------- 1047 (1093)
++.+++.||+.||+++.. +.|.|.+.. ++ ...++|.|||.|||++.++++|++|++ +.
T Consensus 28 ~~~~vv~eLv~NAidA~a---~~I~I~i~~-~~---------~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~ 94 (348)
T 3na3_A 28 RPANAIKEMIENCLDAKS---TSIQVIVKE-GG---------LKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLAS 94 (348)
T ss_dssp SHHHHHHHHHHHHHHTTC---SEEEEEEEG-GG---------TSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC-----
T ss_pred CHHHHHHHHHHHHHHcCC---CEEEEEEEe-CC---------EEEEEEEECCcCcChHHhhhhhccccccccCcchhhhc
Confidence 467999999999999953 688888753 22 346899999999999999999999988 21
Q ss_pred ----CCccchHHHHHHHHHHcCCEEEEEeeC
Q 001353 1048 ----TPEGLGLKLSRKLLIMMNGRVRYVREN 1074 (1093)
Q Consensus 1048 ----~GtGLGL~ivr~ive~hgG~I~v~S~~ 1074 (1093)
+-.|.||+.+-.+ . ++.+.|..
T Consensus 95 i~s~GfrGeaL~Si~av----s-~l~v~sr~ 120 (348)
T 3na3_A 95 ISTYGFRGEALASISHV----A-HVTITTKT 120 (348)
T ss_dssp ----CCTTCHHHHHHHS----S-EEEEEEEC
T ss_pred cccCCcCChHHHHhhcc----c-EEEEEEEE
Confidence 2247888776443 2 56666544
No 170
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.16 E-value=4.4e-06 Score=94.17 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-C---------
Q 001353 977 RLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-W--------- 1046 (1093)
Q Consensus 977 ~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~--------- 1046 (1093)
++.+++.||+.||+++.. ..|.|.+...+ ...|+|.|||.|||++.+..+|++|++ +
T Consensus 24 ~~~~~v~ELi~NaidA~a---~~I~I~i~~~~----------~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~ 90 (333)
T 1b63_A 24 RPASVVKELVENSLDAGA---TRIDIDIERGG----------AKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEA 90 (333)
T ss_dssp SHHHHHHHHHHHHHHTTC---SEEEEEEEGGG----------TSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHT
T ss_pred CHHHHHHHHHHHHHHCCC---CeEEEEEEeCC----------ceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhh
Confidence 467999999999999874 58888876422 246899999999999999999999977 2
Q ss_pred ---CCCccchHHHHHHH
Q 001353 1047 ---TTPEGLGLKLSRKL 1060 (1093)
Q Consensus 1047 ---~~GtGLGL~ivr~i 1060 (1093)
.++.|+||+.+..+
T Consensus 91 ~~~~G~~G~gl~si~~v 107 (333)
T 1b63_A 91 IISLGFRGEALASISSV 107 (333)
T ss_dssp CCSSCCSSCHHHHHHTT
T ss_pred ccccCccccchhhhhcC
Confidence 13489999988543
No 171
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.15 E-value=7.7e-06 Score=91.07 Aligned_cols=103 Identities=4% Similarity=-0.013 Sum_probs=86.4
Q ss_pred ccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCC-ce-EEEEEEEeeeccCCc
Q 001353 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED-KN-VELKLRKFELQKQHS 706 (1093)
Q Consensus 629 ~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~-~~-~e~~l~~~~~~kdG~ 706 (1093)
..+...+.+|+++++|+++..++||.++|++|+++. +++||+|.+.+.+.+..+++++.. .. .++++ .++||+
T Consensus 166 ~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~-~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~----~~kdG~ 240 (309)
T 3gdi_A 166 IFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVL-VQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRF----RTRNGE 240 (309)
T ss_dssp EEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHH-HHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEE----ECTTSC
T ss_pred eEEEEecCCCeEEEECcccccccCcCHHHHcCCCHH-HhCCHHHHHHHHHHHHHHHhcCCceeeceEEEE----EccCCC
Confidence 356778999999999999999999999999999999 999999999999999998875433 22 24444 578999
Q ss_pred EEEEEEEEEEeecC-CCCEEEEEEEEEecch
Q 001353 707 VVYILVNACTSRDY-KNNVKGVCFVGQDITH 736 (1093)
Q Consensus 707 ~~~v~v~~~pi~d~-~g~v~gv~~v~~DITe 736 (1093)
.+|+..++.++++. .+++..++++-+-++.
T Consensus 241 ~vwvet~~~~~~np~s~~~e~ii~~h~v~~g 271 (309)
T 3gdi_A 241 YITLDTSWSSFINPWSRKISFIIGRHKVRVG 271 (309)
T ss_dssp EEEEEEEEEEEECTTTCCEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEEECCCCCcccEEEEEEEEccC
Confidence 99999999999886 5677788888777665
No 172
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.15 E-value=7.8e-07 Score=82.18 Aligned_cols=95 Identities=13% Similarity=0.127 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCC---CcchhccccCCCc--------------cce
Q 001353 741 MDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGW---MRHEVIGITGQGT--------------ENF 803 (1093)
Q Consensus 741 Ee~L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~---~~eEliG~~~~~~--------------~~~ 803 (1093)
.+++++.++.++.+++++++ +|+++|.+|+++++|+++++++|| +.++++|..-... ...
T Consensus 7 ~~~l~~~~~~~~~il~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 83 (118)
T 2w0n_A 7 PYEISTLFEQRQAMLQSIKE---GVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVDVSEVLRDGTPRR 83 (118)
T ss_dssp HHHHCTTHHHHHHHHHCCCC---CCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHhhccc---cEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcccccCchhHHHHhccCceec
Confidence 35566677888999999998 899999999999999999999997 7888888111100 000
Q ss_pred eeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecc
Q 001353 804 PFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 842 (1093)
Q Consensus 804 e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DIT 842 (1093)
... ...+| +|+.++..|+.+ +|.+.|++++++|||
T Consensus 84 ~~~-~~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 84 DEE-ITIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCC-EESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred cEE-EEECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 111 23355 467778888887 888899999999997
No 173
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.15 E-value=3.7e-06 Score=95.67 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-CC--------
Q 001353 977 RLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-WT-------- 1047 (1093)
Q Consensus 977 ~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~~-------- 1047 (1093)
++.+++.||+.||+++.. +.|.|.+... + ...|+|.|||.|||++.++++|++|++ +.
T Consensus 34 ~~~~vl~eLv~NAiDA~a---~~I~I~i~~~-~---------~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~ 100 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAGA---TNIDLKLKDY-G---------VDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQ 100 (365)
T ss_dssp CHHHHHHHHHHHHHHTTC---SEEEEEEEGG-G---------TSEEEEEECSCCCCGGGSGGGGC----------CCTTC
T ss_pred hHHHHHHHHHHHHHHCCC---CEEEEEEEeC-C---------cEEEEEEECCCCcCHHHHHHHhhhccccccccccchhc
Confidence 467999999999999864 5788887542 2 357899999999999999999999987 11
Q ss_pred ---CC-ccchHHHHHHH
Q 001353 1048 ---TP-EGLGLKLSRKL 1060 (1093)
Q Consensus 1048 ---~G-tGLGL~ivr~i 1060 (1093)
.| .|+||+.+..+
T Consensus 101 i~s~G~rG~gl~si~~v 117 (365)
T 1h7s_A 101 VETFGFRGEALSSLCAL 117 (365)
T ss_dssp SEEESSSSSHHHHHHHH
T ss_pred ccccCCCCchhhhhhhh
Confidence 13 39999887544
No 174
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.15 E-value=3.5e-06 Score=78.31 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=62.2
Q ss_pred ceEEecCC-CcEeechhhhHHHhCCCcchhccc------------------c----CCCc----cceeeEEEccCCcEEE
Q 001353 764 PIFASDEN-ACCSEWNAAMEKVTGWMRHEVIGI------------------T----GQGT----ENFPFGFFNRQGQFVE 816 (1093)
Q Consensus 764 ~I~~~D~~-g~i~~~N~a~~~l~G~~~eEliG~------------------~----~~~~----~~~e~~~~~kdG~~~~ 816 (1093)
+|+++|.+ |+|+++|+++++++||+++|++|. . .... ...++.+.++||+.+|
T Consensus 10 ~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~ 89 (114)
T 1ll8_A 10 AIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISRSGEKIP 89 (114)
T ss_dssp EEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCTTCCCEE
T ss_pred eEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHHHHHhhccCCcceeccCcEEEEEecCCCEEE
Confidence 89999999 999999999999999999999990 0 0000 1345677899999999
Q ss_pred EEEEEeEeecCCCcEEEEEEEEeecc
Q 001353 817 VALTASRRTDAEGKVIGCFCFMQILV 842 (1093)
Q Consensus 817 v~~~~~~i~d~~G~v~g~i~~~~DIT 842 (1093)
+.++.+++.+.++. +++++++|++
T Consensus 90 v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 90 VSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp EECCEECCBSSSSB--EEEEEEEECC
T ss_pred EEEEEEeeccCCcc--EEEEEEeecC
Confidence 99999999876654 5788888875
No 175
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.14 E-value=6.4e-07 Score=84.37 Aligned_cols=90 Identities=12% Similarity=0.119 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc------c----------------cCCCcc
Q 001353 744 FIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------I----------------TGQGTE 801 (1093)
Q Consensus 744 L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG------~----------------~~~~~~ 801 (1093)
+...+..++.+++++++ +|+++|.+|+|+++|+++++++|+++++++| . ..+...
T Consensus 7 ~~~~~~~~~~il~~~~~---~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (118)
T 3fg8_A 7 HHHHSSGRENLYFQGGL---GFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQ 83 (118)
T ss_dssp ------CCCCSSSCTTC---EEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCE
T ss_pred cccccchHHHHHhhCCc---eEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCce
Confidence 44556667788888888 8999999999999999999999999999999 1 111111
Q ss_pred ceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccC
Q 001353 802 NFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPD 844 (1093)
Q Consensus 802 ~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~ 844 (1093)
..++.....+| .|+.++..|+.+ |++++++|||++
T Consensus 84 ~~~~~~~~~~g--~~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 84 QTRVDSLYSPG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp EEEEECSSSTT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred EEEEEEEcCCC--eEEEEEEEEcCC------cEEEEEEeccCC
Confidence 22112233356 466777777653 378899999985
No 176
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=98.14 E-value=0.00014 Score=73.27 Aligned_cols=146 Identities=11% Similarity=0.076 Sum_probs=106.3
Q ss_pred HHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHH
Q 001353 213 QKLAVSAISR-LQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAAR 291 (1093)
Q Consensus 213 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r 291 (1093)
|..+..-+++ +.. ..|+.+.++.++..+.+.++++|+.+|-+++++. +.+..+... .+ -..+||-.. --.-
T Consensus 15 ~~~ll~~i~~ll~~--~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~-~L~l~a~~G-~~--~~~~i~~ge--Gi~G 86 (167)
T 3mmh_A 15 YREVLPQIESVVAD--ETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSD-ELVLAPFQG-PL--ACTRIPFGR--GVCG 86 (167)
T ss_dssp HHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTT-EEEEEEEES-SC--CCSEEETTS--HHHH
T ss_pred HHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCC-EEEEEEecc-cc--cceEeccCC--ChHH
Confidence 4433333433 344 5699999999999999999999999999998765 444333221 11 123444321 3345
Q ss_pred HhHhcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeec
Q 001353 292 FLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHH 371 (1093)
Q Consensus 292 ~l~~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~ 371 (1093)
.-+..++.-+|+|+...|--+ +| ..+++|-++|||+.+| +++|.|...+
T Consensus 87 ~v~~~g~~~~v~Dv~~~p~~~---------------------~~------~~~~~S~i~vPi~~~g----~viGVL~i~s 135 (167)
T 3mmh_A 87 QAWAKGGTVVVGDVDAHPDHI---------------------AC------SSLSRSEIVVPLFSDG----RCIGVLDADS 135 (167)
T ss_dssp HHHHHTSCEEESCGGGSTTCC---------------------CS------STTCCEEEEEEEEETT----EEEEEEEEEE
T ss_pred HHHhCCcEEEECCcccCcchh---------------------hc------CccCCeEEEEEeccCC----EEEEEEEEec
Confidence 667788888999988765421 11 1367899999999988 9999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHH
Q 001353 372 TSPRYIPFPLRYACEFLVQAFSLQLY 397 (1093)
Q Consensus 372 ~~p~~~~~~~r~~~~~l~~~~~~~l~ 397 (1093)
..|+.++.....+++.++..++..+.
T Consensus 136 ~~~~~F~~~d~~~L~~lA~~la~~i~ 161 (167)
T 3mmh_A 136 EHLAQFDETDALYLGELAKILEKRFE 161 (167)
T ss_dssp SSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887763
No 177
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.11 E-value=6.9e-07 Score=101.17 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhccccCCCc---------------cceeeEEE
Q 001353 744 FIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGITGQGT---------------ENFPFGFF 808 (1093)
Q Consensus 744 L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG~~~~~~---------------~~~e~~~~ 808 (1093)
++++++.++.+++++++ +|+++|.+|+|++||+++++++||++++++|..-... ...+....
T Consensus 3 l~~~~~~~~~i~~~~~~---~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (349)
T 3a0r_A 3 VEHLRNFSESILESLET---AIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFENKEPVFLN 79 (349)
T ss_dssp ------CCCSSGGGSSS---EEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTTHHHHHHHHHHHHCCCCEEE
T ss_pred hHHHHHHHHHHHhhhcC---eEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChhHHHHHHHHHHhcCCceeec
Confidence 45566778889999998 8999999999999999999999999999999211110 01112222
Q ss_pred ccCCcEEEEEEEEeEeecCCCcE-EEEEEEEeecccCcHHH
Q 001353 809 NRQGQFVEVALTASRRTDAEGKV-IGCFCFMQILVPDLQPA 848 (1093)
Q Consensus 809 ~kdG~~~~v~~~~~~i~d~~G~v-~g~i~~~~DITe~k~~e 848 (1093)
...+..+|+.++..|+.+.+|.. .|++++++|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e 120 (349)
T 3a0r_A 80 FYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYE 120 (349)
T ss_dssp CCCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTT
T ss_pred ccccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHH
Confidence 23334467888899999988875 68999999999988765
No 178
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=98.10 E-value=4e-07 Score=116.44 Aligned_cols=156 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCce--EEE---EecCC-CCC--CccCCccCCC
Q 001353 213 QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGE--VVS---EIRRS-DLE--PYLGIHFPAN 284 (1093)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~--vva---E~~~~-~~~--~~lg~~~p~~ 284 (1093)
...+.++...|.+ +.+++++++.+++.+++++++||+.||.+++++.|. .++ +.... ..+ +..+.+||..
T Consensus 152 l~~L~eis~~L~~--~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~~p~~ 229 (878)
T 3bjc_A 152 CSRLLELVKDISS--HLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIRLEWN 229 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCcceeeeCC
Confidence 3445566667776 679999999999999999999999999999997643 332 11111 111 2445555533
Q ss_pred CchHHHHHhHhcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEE-cCCCCcce
Q 001353 285 DIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVII-NSKDSMKL 363 (1093)
Q Consensus 285 dip~~~r~l~~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~-~~~~~~~L 363 (1093)
..-+...+..++.-.|+|+...|-- ..........++++.|++||+. +| ++
T Consensus 230 --~gi~g~v~~~g~pv~I~D~~~dp~f----------------------~~~~~~~~~~~~~S~L~vPL~~~~g----~v 281 (878)
T 3bjc_A 230 --KGIVGHVAALGEPLNIKDAYEDPRF----------------------NAEVDQITGYKTQSILCMPIKNHRE----EV 281 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --ccHHHHHHhcCceEEeCCcccCccc----------------------ccccccccCCccceEEEEeeEcCCC----CE
Confidence 1123445556666677776654321 1122223456689999999998 77 99
Q ss_pred eEEEEeecCCCC---CCCchHHHHHHHHHHHHHHHHHH
Q 001353 364 WGLVVCHHTSPR---YIPFPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 364 WGl~~~h~~~p~---~~~~~~r~~~~~l~~~~~~~l~~ 398 (1093)
||.|.++++.++ .|+.+...+++.++.+++..|..
T Consensus 282 iGvL~l~~~~~~~~~~ft~~D~~lL~~lA~~~a~AL~n 319 (878)
T 3bjc_A 282 VGVAQAINKKSGNGGTFTEKDEKDFAAYLAFCGIVLHN 319 (878)
T ss_dssp --------------------------------------
T ss_pred EEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999998754 89999999999999999998864
No 179
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.08 E-value=2.5e-06 Score=97.99 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=60.3
Q ss_pred EecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhh--------hccCC
Q 001353 972 NGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIED--------MYNGR 1043 (1093)
Q Consensus 972 ~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~--------IFe~F 1043 (1093)
.++...+.+++.|++.||+++. .+.|.|.+...+ .|+|.|||+|||++.+++ +|.+|
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~~---~~~I~V~i~~~~------------~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~ 95 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAGY---ATEILVRLNEDG------------SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTL 95 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS---CCEEEEEECTTS------------CEEEEECSSCCCCSEETTTTEEHHHHHHHSS
T ss_pred chHHHHHHHHHHHHHHHhhhCC---CCEEEEEEEcCC------------EEEEEEcCCCCCHHHhhhccccchhhheeee
Confidence 4677788888888888888742 478888874332 489999999999999887 89875
Q ss_pred CC-----------CCCCccchHHHHHHHHHHc
Q 001353 1044 NQ-----------WTTPEGLGLKLSRKLLIMM 1064 (1093)
Q Consensus 1044 ~~-----------~~~GtGLGL~ivr~ive~h 1064 (1093)
++ ..++.|+||++|+.+.+.+
T Consensus 96 ~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~ 127 (390)
T 1kij_A 96 HSGGKFEQGAYKVSGGLHGVGASVVNALSEWT 127 (390)
T ss_dssp CEESGGGGSSCCCCSCSSTTSHHHHHHTEEEE
T ss_pred eecccccCccccccCCCCCcceeeecccccce
Confidence 44 1245899999999988643
No 180
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.93 E-value=1.9e-05 Score=89.56 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC
Q 001353 977 RLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ 1045 (1093)
Q Consensus 977 ~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~ 1045 (1093)
++.+++.||+.||+++.. ..|.|.+.. ++ ...++|.|||.|||++.++.+|++|++
T Consensus 25 ~~~~vv~eLv~NaiDA~a---~~I~I~i~~-~~---------~~~i~V~DnG~Gi~~~~l~~~~~~~~t 80 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDANA---NQIEIIFKD-YG---------LESIECSDNGDGIDPSNYEFLALKHYT 80 (367)
T ss_dssp SHHHHHHHHHHHHHHTTC---SEEEEEEET-TT---------TSEEEEEECSCCCCGGGTTTTTCCEEC
T ss_pred CHHHHHHHHHHHHHHCCC---CEEEEEEEe-CC---------EEEEEEEECCCCcChhHhccceecccc
Confidence 467999999999999863 578887742 22 357999999999999999999999987
No 181
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.92 E-value=5.8e-06 Score=84.83 Aligned_cols=91 Identities=12% Similarity=0.098 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcccc----------------CC-CccceeeEEEc
Q 001353 747 LQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGIT----------------GQ-GTENFPFGFFN 809 (1093)
Q Consensus 747 se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG~~----------------~~-~~~~~e~~~~~ 809 (1093)
....++.+++++++ ||+++|.+|+|+++|+++++++|++.++++|.. +. .....++.
T Consensus 78 ~~~~l~~il~~~~~---gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 151 (190)
T 2jhe_A 78 EHLALSALLEALPE---PVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVV--- 151 (190)
T ss_dssp HHHHHHHHHHHCSS---CEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCHHHHHHTCCCSCEEEEEE---
T ss_pred HHHHHHHHHHhCCC---cEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCHHHHHhcCCCCCcceEEE---
Confidence 34568899999998 899999999999999999999999999998811 00 11112222
Q ss_pred cCCcEEEEEEEEeEeecCCCc----EEEEEEEEeecccCc
Q 001353 810 RQGQFVEVALTASRRTDAEGK----VIGCFCFMQILVPDL 845 (1093)
Q Consensus 810 kdG~~~~v~~~~~~i~d~~G~----v~g~i~~~~DITe~k 845 (1093)
.+|+ ++.++..|+.+.+|. +.|++++++|||+.+
T Consensus 152 ~~g~--~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 152 INGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp ETTE--EEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred ECCe--EEEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 2664 456778898876666 888999999999865
No 182
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=97.84 E-value=1.6e-05 Score=91.23 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=71.7
Q ss_pred HHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhccccC---------------------CCccceeeEEE
Q 001353 750 DYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGITG---------------------QGTENFPFGFF 808 (1093)
Q Consensus 750 ~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG~~~---------------------~~~~~~e~~~~ 808 (1093)
+++.+++++++ ||+++|.+|+|++||++ ++++ ++.++++|..- +.....++.+
T Consensus 240 ~l~~IL~~l~d---gIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~~~~~~~l~~~l~~g~~~~~~~~~- 313 (369)
T 3cax_A 240 ELKAIFEALPV---DVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKSVYVVNKILKAFKEGRKKEATFWL- 313 (369)
T ss_dssp HHHHHHHHSSS---EEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGGHHHHHHHHHHHHHTSCSCEEEEE-
T ss_pred HHHHHHHhCCC---cEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhhHHHHHHHHHHHHcCCceEEEEEE-
Confidence 46789999998 99999999999999999 9999 89999999111 1111122222
Q ss_pred ccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecccCcHHH
Q 001353 809 NRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPA 848 (1093)
Q Consensus 809 ~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DITe~k~~e 848 (1093)
..+| +++.+++.|++|.+|++.|++.+++|||+.++.+
T Consensus 314 ~~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le 351 (369)
T 3cax_A 314 RLRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIE 351 (369)
T ss_dssp EETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCC
T ss_pred eeCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHH
Confidence 3456 5788899999999999999999999999865443
No 183
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=97.80 E-value=0.00076 Score=69.68 Aligned_cols=142 Identities=13% Similarity=0.106 Sum_probs=104.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhh-CCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHh
Q 001353 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLT-GYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFL 293 (1093)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~-~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l 293 (1093)
++.++-..+.. ..++.++++.+++.+++.+ +++++.+|-+++ |+.+..... +.. -..+||-.. --+-.-
T Consensus 30 ll~~l~~ll~~--~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~---~~L~l~~~~-G~~--~~~~i~~Ge--Gi~G~a 99 (195)
T 1vhm_A 30 LNRDFNALMAG--ETSFLATLANTSALLYERLTDINWAGFYLLED---DTLVLGPFQ-GKI--ACVRIPVGR--GVCGTA 99 (195)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHHHHSSSCSEEEEEEEET---TEEEEEEEE-ESC--CCSEEETTS--HHHHHH
T ss_pred HHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCCCCCEEEEEEEEC---CEEEEEEec-Ccc--cceEecCCC--ChHHHH
Confidence 33444455555 5699999999999999999 999999999986 344433221 111 144554331 234556
Q ss_pred HhcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCC
Q 001353 294 FKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTS 373 (1093)
Q Consensus 294 ~~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~ 373 (1093)
+..++.-+|+|+...|--+ .| ..+++|-|+|||+.+| ++.|.|......
T Consensus 100 a~tg~~i~V~Dv~~~p~~~---------------------~~------~~~~~S~l~VPI~~~g----~viGVL~i~s~~ 148 (195)
T 1vhm_A 100 VARNQVQRIEDVHVFDGHI---------------------AC------DAASNSEIVLPLVVKN----QIIGVLDIDSTV 148 (195)
T ss_dssp HHHTSCEEESCTTTCTTCC---------------------CS------CCCCSEEEEEEEEETT----EEEEEEEEEESS
T ss_pred HhcCCEEEECCcccCcchh---------------------hc------CCCccEEEEEeEeECC----EEEEEEEecCCC
Confidence 7778888999998765421 01 1257999999999988 999999999988
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHH
Q 001353 374 PRYIPFPLRYACEFLVQAFSLQLY 397 (1093)
Q Consensus 374 p~~~~~~~r~~~~~l~~~~~~~l~ 397 (1093)
|+.++.....+++.++.+++..|+
T Consensus 149 ~~~F~e~d~~~L~~lA~~ia~ale 172 (195)
T 1vhm_A 149 FGRFTDEDEQGLRQLVAQLEKVLA 172 (195)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988874
No 184
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=97.79 E-value=2.3e-05 Score=68.23 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=58.1
Q ss_pred CceEEecCCCcEeechhhhHHHhCCCcchhccccCC---Cc------------cceeeEEEccCCcEEEEEEEEeEeecC
Q 001353 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIGITGQ---GT------------ENFPFGFFNRQGQFVEVALTASRRTDA 827 (1093)
Q Consensus 763 ~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG~~~~---~~------------~~~e~~~~~kdG~~~~v~~~~~~i~d~ 827 (1093)
.+|+++|.+|+++++|+++++++|++.++++|..-. .. ...++.+...+|..+|+.++..|+.+.
T Consensus 3 ~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 82 (96)
T 3a0s_A 3 TAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFENKEPVFLNFYKFGERYFNIRFSPFRNA 82 (96)
T ss_dssp CEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGSTTCHHHHHHHHHHHHHTCCEEEEEEEETTEEEEEEEEEEECT
T ss_pred ceEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHCcchHHHHHHHHHHhccCCeEEEEEEcCCcEEEEEEEEEeEcC
Confidence 489999999999999999999999999999881110 00 011223333355557899999999998
Q ss_pred CCc-EEEEEEEEee
Q 001353 828 EGK-VIGCFCFMQI 840 (1093)
Q Consensus 828 ~G~-v~g~i~~~~D 840 (1093)
+|. +.|++++++|
T Consensus 83 ~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 83 KTQLLEGVIITIDD 96 (96)
T ss_dssp TTCCEEEEEEEEEC
T ss_pred CCCeeeEEEEEecC
Confidence 664 7889988876
No 185
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=97.68 E-value=0.0018 Score=64.45 Aligned_cols=130 Identities=13% Similarity=0.196 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHHHHHhhhC-CCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCeEEEecCC
Q 001353 228 GGDIGLLCDTVVEDVQKLTG-YDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCH 306 (1093)
Q Consensus 228 ~~~~~~~~~~~~~~vr~~~~-~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~ 306 (1093)
..|+...++.++..+++.++ +|++-+|-+++ ++.+....... +. ..+||-.. --...-+..++.-+|+|+.
T Consensus 29 ~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~---~~L~l~~~~G~-~a--~~ri~~Ge--Gv~G~aa~~~~~i~V~Dv~ 100 (160)
T 3ksh_A 29 EHHMIAILSNMSALLNDNLDQINWVGFYLLEQ---NELILGPFQGH-PA--CVHIPIGK--GVCGTAVSERRTQVVADVH 100 (160)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSCSEEEEEEEET---TEEEEEEEEES-CC--CSEEETTS--HHHHHHHHHTSCEEESCGG
T ss_pred CCCHHHHHHHHHHHHHHHcccCCEEEEEEEEC---CEEEEEeccCC-cc--cEEeeCCC--CHHHHHHhhCCEEEECCcc
Confidence 46999999999999999997 99999999974 46555443321 11 23444321 3446667888999999998
Q ss_pred CCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCCCCCchHHHHHH
Q 001353 307 AIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACE 386 (1093)
Q Consensus 307 ~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~~~~~~~r~~~~ 386 (1093)
..|--+ .| ..+++|-++|||+.+| +++|.|...+..++.++.....+++
T Consensus 101 ~~p~~i---------------------~~------~~~~~Sei~VPI~~~g----~viGVL~i~s~~~~~F~e~D~~~L~ 149 (160)
T 3ksh_A 101 QFKGHI---------------------AC------DANSKSEIVVPIFKDD----KIIGVLDIDAPITDRFDDNDKEHLE 149 (160)
T ss_dssp GSTTCC---------------------GG------GTTCSEEEEEEEEETT----EEEEEEEEEESSSSCCCHHHHHHHH
T ss_pred cCcccc---------------------cc------CcccCceEEEEEEECC----EEEEEEEEecCCCCCCCHHHHHHHH
Confidence 766432 11 1357899999999988 9999999999889999999999999
Q ss_pred HHHHHHHHHH
Q 001353 387 FLVQAFSLQL 396 (1093)
Q Consensus 387 ~l~~~~~~~l 396 (1093)
.++.+++..|
T Consensus 150 ~lA~~la~~~ 159 (160)
T 3ksh_A 150 AIVKIIEKQL 159 (160)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998887554
No 186
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=97.57 E-value=0.00012 Score=69.69 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=57.8
Q ss_pred HHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc-----------------------ccCCCccceeeEEE-c
Q 001353 754 IIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-----------------------ITGQGTENFPFGFF-N 809 (1093)
Q Consensus 754 i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG-----------------------~~~~~~~~~e~~~~-~ 809 (1093)
++++++. ||+++|.+|+|++||.++++++||++++++| .. .......+.+. +
T Consensus 27 ~ld~l~~---GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~-~G~l~~~~~yv~~ 102 (129)
T 1mzu_A 27 EFDALPV---GAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVT-SGTLDARFDFVFD 102 (129)
T ss_dssp TGGGCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHH-TSCCEEEEEEEEE
T ss_pred HHhccCc---eEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHh-cCceeEEEEEEEc
Confidence 5777776 9999999999999999999999999999999 11 12233344444 8
Q ss_pred cCCcEEEEEEEEeEeecCCCcEEEEE
Q 001353 810 RQGQFVEVALTASRRTDAEGKVIGCF 835 (1093)
Q Consensus 810 kdG~~~~v~~~~~~i~d~~G~v~g~i 835 (1093)
++|+ ++.++.....+++|...+++
T Consensus 103 ~~~~--p~~v~i~l~~~~~~~~~~i~ 126 (129)
T 1mzu_A 103 FQMA--PVRVQIRMQNAGVPDRYWIF 126 (129)
T ss_dssp CSSC--EEEEEEEEEECSSTTEEEEE
T ss_pred CCCC--EEEEEEEEEEcCCCCEEEEE
Confidence 8999 55555566678888877654
No 187
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=97.56 E-value=0.00016 Score=68.73 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=58.8
Q ss_pred HHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhccc----------cC------------CCccceeeEEE-
Q 001353 752 EAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGI----------TG------------QGTENFPFGFF- 808 (1093)
Q Consensus 752 r~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG~----------~~------------~~~~~~e~~~~- 808 (1093)
..++++++. ||+++|.+|+|++||+++++++||++++++|. .. .+.....+.+.
T Consensus 20 ~~~ld~l~~---Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~l~~~~~~v~ 96 (125)
T 1nwz_A 20 DGQLDGLAF---GAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTF 96 (125)
T ss_dssp HHHHTTCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHhccCc---eEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEE
Confidence 346788876 99999999999999999999999999999990 00 11133344444
Q ss_pred ccCCcEEEEEEEEeEeecCCCcEEEEE
Q 001353 809 NRQGQFVEVALTASRRTDAEGKVIGCF 835 (1093)
Q Consensus 809 ~kdG~~~~v~~~~~~i~d~~G~v~g~i 835 (1093)
+++|+ ++.++.....+++|...+++
T Consensus 97 ~~~~~--p~~v~i~l~~~~~~~~~~i~ 121 (125)
T 1nwz_A 97 DYQMT--PTKVKVHMKKALSGDSYWVF 121 (125)
T ss_dssp CTTSC--CEEEEEEEEECSSSSEEEEE
T ss_pred cCCCC--EEEEEEEEEEcCCCCEEEEE
Confidence 89999 55555566678888877554
No 188
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=97.54 E-value=0.0015 Score=66.76 Aligned_cols=138 Identities=7% Similarity=0.023 Sum_probs=100.6
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhhh-----CCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHh
Q 001353 221 SRLQALPGGDIGLLCDTVVEDVQKLT-----GYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFK 295 (1093)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~vr~~~-----~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~ 295 (1093)
..+.. ..++..+++.+++.+.+.+ +++++.+|-++++..++.+.-...... -..+||-.. --.-.-..
T Consensus 34 ~ll~~--~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g~~---~~~~i~~g~--Gi~G~aa~ 106 (180)
T 1f5m_A 34 GLSDG--QVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGKV---ACQMIQFGK--GVCGTAAS 106 (180)
T ss_dssp HHHTT--CCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEESC---CCSEEETTS--HHHHHHHH
T ss_pred HHHhc--CccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCCCc---cceeecCCC--cchhhhhh
Confidence 34444 4689999999999999998 999999999998764555542221111 134554332 12345566
Q ss_pred cCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEE-cCCCCcceeEEEEeecCCC
Q 001353 296 QNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVII-NSKDSMKLWGLVVCHHTSP 374 (1093)
Q Consensus 296 ~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~-~~~~~~~LWGl~~~h~~~p 374 (1093)
.++.-+|+|+...|--+ .| ..+++|-+++||+. +| ++.|.|...+..|
T Consensus 107 ~g~~v~v~Dv~~dp~~~---------------------~~------~~~~~S~l~vPi~~~~g----~viGVL~l~s~~~ 155 (180)
T 1f5m_A 107 TKETQIVPDVNKYPGHI---------------------AC------DGETKSEIVVPIISNDG----KTLGVIDIDCLDY 155 (180)
T ss_dssp HTSCEEESCGGGSTTCC---------------------CS------STTCCEEEEEEEECTTS----CEEEEEEEEESST
T ss_pred cCCEEEeCCcccCcccc---------------------cc------CcccceEEEEEEEcCCC----eEEEEEEeccCCC
Confidence 67777899987665431 11 13789999999998 77 9999999999889
Q ss_pred CCCCchHHHHHHHHHHHHHHHH
Q 001353 375 RYIPFPLRYACEFLVQAFSLQL 396 (1093)
Q Consensus 375 ~~~~~~~r~~~~~l~~~~~~~l 396 (1093)
+.+......+++.++..++..+
T Consensus 156 ~~F~~~d~~~L~~la~~~a~~~ 177 (180)
T 1f5m_A 156 EGFDHVDKEFLEKLAKLINKSC 177 (180)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCcCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998887653
No 189
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=97.50 E-value=0.003 Score=63.57 Aligned_cols=144 Identities=11% Similarity=0.042 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHhhhC-CCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHH
Q 001353 212 SQKLAVSAISRL-QALPGGDIGLLCDTVVEDVQKLTG-YDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQA 289 (1093)
Q Consensus 212 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vr~~~~-~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~ 289 (1093)
.|..+..-+++| .. ..|+...+..++..+++.++ +|++-+|-+++ ++.+..+.... +. ..+||-.. --
T Consensus 15 ~~~~ll~~l~~ll~~--~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~---~~L~l~a~~G~-~a--~~ri~~Ge--Gv 84 (171)
T 3rfb_A 15 RYQMLNEELSFLLEG--ETNVLANLSNASALIKSRFPNTVFAGFYLFDG---KELVLGPFQGG-VS--CIRIALGK--GV 84 (171)
T ss_dssp HHHHHHHHHHHHHTT--CCBHHHHHHHHHHHHHHHCTTEEEEEEEEECS---SEEEEEEEESS-SC--CCEEETTS--HH
T ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHccCCCEEEEEEEEC---CEEEEEeccCC-cc--ceEeeCCc--CH
Confidence 344333334443 34 56999999999999999997 99999999874 46554443221 11 23443221 34
Q ss_pred HHHhHhcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEe
Q 001353 290 ARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVC 369 (1093)
Q Consensus 290 ~r~l~~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~ 369 (1093)
...-+..++.-+|+|+...|--+ .| ..+++|-++|||+.+| +++|.|..
T Consensus 85 ~G~va~tg~~i~V~Dv~~~p~~i---------------------~~------~~~~~Sei~VPI~~~g----~viGVL~i 133 (171)
T 3rfb_A 85 CGEAAHFQETVIVGDVTTYLNYI---------------------SC------DSLAKSEIVVPMMKNG----QLLGVLDL 133 (171)
T ss_dssp HHHHHHTTSCEEESCTTSCSSCC---------------------CS------CTTCCEEEEEEEEETT----EEEEEEEE
T ss_pred HHHHHhhCCEEEECCcccCcccc---------------------cc------CcccCceEEEEEEECC----EEEEEEEE
Confidence 56677889999999998876532 11 1246899999999988 99999999
Q ss_pred ecCCCCCCCchHHHHHHHHHHHHHHHH
Q 001353 370 HHTSPRYIPFPLRYACEFLVQAFSLQL 396 (1093)
Q Consensus 370 h~~~p~~~~~~~r~~~~~l~~~~~~~l 396 (1093)
.+..++.++.....+++.++..++..+
T Consensus 134 ~s~~~~~F~e~D~~~L~~lA~~la~~~ 160 (171)
T 3rfb_A 134 DSSEIEDYDAMDRDYLEQFVAILLEKT 160 (171)
T ss_dssp EESSTTCCCHHHHHHHHHHHHHHHHSC
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 998899999999999999988887543
No 190
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.19 E-value=0.00012 Score=77.45 Aligned_cols=72 Identities=10% Similarity=0.113 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCC-------------CCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCCC
Q 001353 980 LVLSDFLHCVVRHAPS-------------PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQW 1046 (1093)
Q Consensus 980 qVl~nLl~NAik~t~~-------------~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~~ 1046 (1093)
.+|.+|+.||+++... .++.+.|.+....+ ...|+|.|||.||+++.+...|..+.+.
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~---------~~~i~I~DnG~GMs~edl~~~l~~ia~S 99 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPE---------QKVLEIRDSGIGMTKAELINNLGTIAKS 99 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGG---------GTEEEEEECSCCCCHHHHHHHTTTSCCT
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCC---------CCEEEEEEcCCCCCHHHHHHHHHhHhcc
Confidence 6899999999987531 12445555544333 2368999999999999988877654321
Q ss_pred -----------------CCCccchHHHHHHH
Q 001353 1047 -----------------TTPEGLGLKLSRKL 1060 (1093)
Q Consensus 1047 -----------------~~GtGLGL~ivr~i 1060 (1093)
.+..|+|++.+..+
T Consensus 100 ~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~ 130 (220)
T 2wer_A 100 GTKAFMEALSAGADVSMIGQFGVGFYSLFLV 130 (220)
T ss_dssp THHHHHHHHTTTCCGGGGGGGTCGGGGGGGT
T ss_pred cchhHHHHhhccCCcccCCccchhHHHhhhc
Confidence 12258999877544
No 191
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.06 E-value=0.0012 Score=75.51 Aligned_cols=71 Identities=14% Similarity=0.281 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCCC-CCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhh--------HhhhccCCCC----
Q 001353 979 QLVLSDFLHCVVRHAPSP-DGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL--------IEDMYNGRNQ---- 1045 (1093)
Q Consensus 979 ~qVl~nLl~NAik~t~~~-~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~--------~~~IFe~F~~---- 1045 (1093)
.+++.+++.||++.+-++ ...|.|.+...+ .++|.|||.|||.+. .+.+|..++.
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g------------~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf 100 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKRVDVILHADQ------------SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECTTS------------CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEecCC------------EEEEEECCCCcCcccccccCcchhhheeeeecccCCc
Confidence 566777777777662221 367888765432 489999999999988 6778877533
Q ss_pred ------CCCC-ccchHHHHHHHH
Q 001353 1046 ------WTTP-EGLGLKLSRKLL 1061 (1093)
Q Consensus 1046 ------~~~G-tGLGL~ivr~iv 1061 (1093)
...| .|.||+.+..+.
T Consensus 101 ~~~~~~~sgGl~GvGls~vnalS 123 (390)
T 1s16_A 101 SNKNYQFSGGLHGVGISVVNALS 123 (390)
T ss_dssp SSSSCSSCSCCSSCHHHHHHHTE
T ss_pred CCCcccccCCccccchHHHHHhh
Confidence 1224 899999997665
No 192
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.79 E-value=0.0028 Score=72.42 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHcCCCC-CCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhH--------hhhccCCCC--
Q 001353 977 RLQLVLSDFLHCVVRHAPSP-DGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLI--------EDMYNGRNQ-- 1045 (1093)
Q Consensus 977 ~L~qVl~nLl~NAik~t~~~-~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~--------~~IFe~F~~-- 1045 (1093)
-+.+++.+++.||++.+-++ ...|.|.+...+ .++|.|||.|||.+.. +-+|..+..
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g------------~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhags 101 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN------------SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 101 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS------------CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEES
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCC------------EEEEEECCCCcccCcccccCcchHHHhheeccccC
Confidence 57889999999999873221 257877765432 4899999999999873 446664221
Q ss_pred --------CCCC-ccchHHHHHHHHH
Q 001353 1046 --------WTTP-EGLGLKLSRKLLI 1062 (1093)
Q Consensus 1046 --------~~~G-tGLGL~ivr~ive 1062 (1093)
...| .|.||+.+-.+-+
T Consensus 102 Kf~~~~~~vSgGl~GvGls~vnalS~ 127 (391)
T 1ei1_A 102 KFDDNSYKVSGGLHGVGVSVVNALSQ 127 (391)
T ss_dssp CSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred CcCCCcccccCCccccchHHHHHhcC
Confidence 1223 8999999966653
No 193
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=96.70 E-value=0.014 Score=57.48 Aligned_cols=134 Identities=13% Similarity=0.058 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHH
Q 001353 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAA 290 (1093)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~ 290 (1093)
.+++++.++-..|.+ .+.+++++.+++..++++|+||..+|-+++| |+....+....- +
T Consensus 12 ~rLrlL~e~~~~L~~---l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~--~~l~~~aa~G~~----------------~ 70 (160)
T 3cit_A 12 ARLRLLVDTGQELIQ---LPPEAMRKCVLQRACAFVAMDHGLLLEWGAD--NGVQTTARHGSK----------------E 70 (160)
T ss_dssp HHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHTTCSEEEEEECC----CCCEEEEEESCH----------------H
T ss_pred HHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhccCeeEEEEEcCC--CceeeeeccCch----------------h
Confidence 456777777777744 4679999999999999999999999999995 666544433311 1
Q ss_pred HHhHhcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEE-EcCCCCcceeEEEEe
Q 001353 291 RFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVI-INSKDSMKLWGLVVC 369 (1093)
Q Consensus 291 r~l~~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~-~~~~~~~~LWGl~~~ 369 (1093)
| ...+|+++|.....-.- + +..-+..++-|+||+. .+| +.+|.+.+
T Consensus 71 ~----l~~lr~~~~~~~~gpr~--~-----------------------~~tg~~t~svl~vPL~~~~g----~~~Gvlql 117 (160)
T 3cit_A 71 R----LSTLETTADPLAIGPQW--L-----------------------ERPGTHLPCVLLLPLRGADE----GSFGTLVL 117 (160)
T ss_dssp H----HTTSCCCCCTTCCSCEE--E-----------------------ECTTSSSCEEEEEEEECSSS----SEEEEEEE
T ss_pred h----hhhhhcccccccccccc--c-----------------------cccCcccceeEEEeeecCCC----cEEEEEEE
Confidence 1 23445555554432000 0 0223345778999996 555 99999998
Q ss_pred ecCC-CCCCCchHHHHHHHHHHHHHHHHHH
Q 001353 370 HHTS-PRYIPFPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 370 h~~~-p~~~~~~~r~~~~~l~~~~~~~l~~ 398 (1093)
=+.. ...+..+...+++.|+.+++.+|..
T Consensus 118 ~N~~~~~~f~~eD~e~l~lLA~~~a~aien 147 (160)
T 3cit_A 118 ANSVAISAPDGEDIESLQLLATLLAAHLEN 147 (160)
T ss_dssp EESSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6664 6689999999999999999998854
No 194
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.70 E-value=0.00023 Score=76.98 Aligned_cols=54 Identities=9% Similarity=0.150 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCC-------------CCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccC
Q 001353 980 LVLSDFLHCVVRHAP-------------SPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNG 1042 (1093)
Q Consensus 980 qVl~nLl~NAik~t~-------------~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~ 1042 (1093)
.+|.+||.||+++.. ..++.+.|.+....+ .-.|+|.|||+||+++.+...|..
T Consensus 31 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~---------~~~l~I~DnGiGMt~edl~~~l~t 97 (269)
T 1qy5_A 31 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE---------KNLLHVTDTGVGMTREELVKNLGT 97 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCC---------ceEEEEEECCCCCCHHHHHHHhhh
Confidence 488999999998742 012444444444333 235889999999999998766654
No 195
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=96.66 E-value=0.00028 Score=90.09 Aligned_cols=141 Identities=9% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCC---------CCccCCccCCCCchHHHHHhHhcCCe
Q 001353 229 GDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDL---------EPYLGIHFPANDIPQAARFLFKQNRV 299 (1093)
Q Consensus 229 ~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~---------~~~lg~~~p~~dip~~~r~l~~~~~~ 299 (1093)
.+++++++.+++.+++++++||+.||-+++++. +.++.+....- .+.-+.++|.. ..-+...+..++.
T Consensus 348 ~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~~-~l~a~a~~~~s~~~~~~~~~~~~~~~~~p~~--~gi~g~v~~~g~~ 424 (878)
T 3bjc_A 348 QSLEVILKKIAATIISFMQVQKCTIFIVDEDCS-DSFSSVFHMECEELEKSSDTLTREHDANKIN--YMYAQYVKNTMEP 424 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHhCcceeEEEEEcCccc-chhHHHhhccccccccccccccccccccchh--hhHHHHHhhcCCe
Confidence 589999999999999999999999999998643 44544432111 11113344432 1112334455555
Q ss_pred EEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHh---cCceeEEEEEEEEc--CCCCcceeEEEEeecCCC
Q 001353 300 RMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTN---MGSIASLVMAVIIN--SKDSMKLWGLVVCHHTSP 374 (1093)
Q Consensus 300 r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n---~~v~asl~~~i~~~--~~~~~~LWGl~~~h~~~p 374 (1093)
-.|+|+...+-- +.+...... .++++-|++||+.+ | +++|.|...++.+
T Consensus 425 v~i~D~~~d~r~----------------------~~~~~~~~g~~~~~~rS~L~vPL~~~~~g----~viGVL~l~~~~~ 478 (878)
T 3bjc_A 425 LNIPDVSKDKRF----------------------PWTTENTGNVNQQCIRSLLCTPIKNGKKN----KVIGVCQLVNKME 478 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeecCccccccc----------------------ccccccccCccccccceEEEEEEecCCCC----cEEEEEEEEEcCC
Confidence 566666544321 111111222 67899999999986 6 9999999988765
Q ss_pred ------CCCCchHHHHHHHHHHHHHHHHHH
Q 001353 375 ------RYIPFPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 375 ------~~~~~~~r~~~~~l~~~~~~~l~~ 398 (1093)
+.|+.....+++.++.++++.|..
T Consensus 479 ~~~G~~~~Ft~~d~~lL~~lA~~aaiAIen 508 (878)
T 3bjc_A 479 ENTGKVKPFNRNDEQFLEAFVIFCGLGIQN 508 (878)
T ss_dssp ------------------------------
T ss_pred CcccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999998854
No 196
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=96.66 E-value=0.00068 Score=73.24 Aligned_cols=73 Identities=10% Similarity=0.165 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCC-------------CCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-
Q 001353 980 LVLSDFLHCVVRHAP-------------SPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ- 1045 (1093)
Q Consensus 980 qVl~nLl~NAik~t~-------------~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~- 1045 (1093)
.+|.+|+.||+++.. ..++.|.|.+....+ .-.|+|.|||.||+++.+...|..+.+
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~---------~~~I~I~DnG~GMs~edL~~~l~~ia~S 141 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQ---------DRTLTIVDTGIGMTKADLINNLGTIAKS 141 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCC---------eeEEEEEECCcCCCHHHHHHHHHhhccc
Confidence 688999999998753 002445555543322 225889999999999998776655432
Q ss_pred ----------------CCCCccchHHHHHHHH
Q 001353 1046 ----------------WTTPEGLGLKLSRKLL 1061 (1093)
Q Consensus 1046 ----------------~~~GtGLGL~ivr~iv 1061 (1093)
..+..|+|++.+..++
T Consensus 142 ~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va 173 (264)
T 1yc1_A 142 GTKAFMEALQAGADISMIGQFGVGFYSAYLVA 173 (264)
T ss_dssp CHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHE
T ss_pred cchhhhhhhccccchhhcCCCCCCccccccCC
Confidence 1123589998876654
No 197
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=96.62 E-value=0.0042 Score=57.08 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc-ccc
Q 001353 857 MDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDG-MDL 919 (1093)
Q Consensus 857 ~~~~~k~~~la~isHELrnPLt~I~g~~~LL~~~~l~~~~~~~l~~i~~~~~rl~~lI~d-Ldl 919 (1093)
+....+.+|++.++||+||||+.|.++.+++.+ ....+++.+...+++|..++++ +++
T Consensus 55 ~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~-----~~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 55 QLADDGTLLMAGVSHDLRTPLTRIRLATEMMSE-----QDGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG-----GGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333456678999999999999999999998764 2344568889999999999998 454
No 198
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=96.56 E-value=0.0047 Score=64.02 Aligned_cols=71 Identities=14% Similarity=0.251 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCCCC-CCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhH--------hh-hccCCCC---
Q 001353 979 QLVLSDFLHCVVRHAPSP-DGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLI--------ED-MYNGRNQ--- 1045 (1093)
Q Consensus 979 ~qVl~nLl~NAik~t~~~-~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~--------~~-IFe~F~~--- 1045 (1093)
..++.+|+.||++..-.. ...|.|.+...+ .++|.|||.|||.+.. +. ++.+..+
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i~~~g------------~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~ 86 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVILHADQ------------SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 86 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECTTS------------CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC------
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEEeCCC------------EEEEEECCCCcCcccccccCcchhheeeeeeccccCc
Confidence 689999999999883221 267887764221 4899999999999873 34 3444322
Q ss_pred ------CCCC-ccchHHHHHHHH
Q 001353 1046 ------WTTP-EGLGLKLSRKLL 1061 (1093)
Q Consensus 1046 ------~~~G-tGLGL~ivr~iv 1061 (1093)
...| .|.||+.+-.+-
T Consensus 87 ~~~~~~~s~GfrGeglssinalS 109 (201)
T 3fv5_A 87 SNKNYQFSGGLHGVGISVVNALS 109 (201)
T ss_dssp ---------------CHHHHHTE
T ss_pred CCCcccccCcccceecchhhccc
Confidence 1122 688888886554
No 199
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=96.46 E-value=0.0032 Score=67.02 Aligned_cols=70 Identities=11% Similarity=0.149 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCC---------------CCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCC
Q 001353 980 LVLSDFLHCVVRHAP---------------SPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRN 1044 (1093)
Q Consensus 980 qVl~nLl~NAik~t~---------------~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~ 1044 (1093)
.++.+|+.||+++.. +....|.|.+..... .|+|.|||.||+++.+...|..+.
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~-----------~i~I~DnG~GMs~edl~~~~~~ia 118 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-----------TLTISDNGVGMTRDEVIDHLGTIA 118 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTT-----------EEEEEECSSCCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCce-----------EEEEEECCCCCCHHHHHHHHHHHc
Confidence 689999999999852 212345554432222 488999999999999988886643
Q ss_pred CC-------------------CCCccchHHHHHHH
Q 001353 1045 QW-------------------TTPEGLGLKLSRKL 1060 (1093)
Q Consensus 1045 ~~-------------------~~GtGLGL~ivr~i 1060 (1093)
+. .+..|+|++.+..+
T Consensus 119 ~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~ 153 (235)
T 2ior_A 119 KSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIV 153 (235)
T ss_dssp CTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGT
T ss_pred cccccchhhhhccccccccccCCCCChhHHHHHhC
Confidence 31 12479999766443
No 200
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=95.96 E-value=0.0062 Score=57.70 Aligned_cols=87 Identities=6% Similarity=0.041 Sum_probs=69.1
Q ss_pred CccEEEECCCCcEEEecHHHHHhcCCCc--cccCCCCccccccccccHH--HHHHHHHHHHcCCCCceEEEEEEEeeecc
Q 001353 628 TAPIFGVDSSGTINGWNAKVAELTGLPA--SEAMGKSLIDEVVHEESQG--AVENLICRALLGEEDKNVELKLRKFELQK 703 (1093)
Q Consensus 628 ~~~I~~~D~dG~I~~~N~~~~~llG~~~--eeliG~~~~~~lv~~~~~~--~~~~~l~~~l~g~~~~~~e~~l~~~~~~k 703 (1093)
..-+.-.|.+|+|+++.++.. ..++.+ +|++|+++. +++|++|.+ .+.+..+.++..+.....-++++ .+
T Consensus 7 e~F~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy-~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr----~k 80 (132)
T 1oj5_A 7 ESFMTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIY-AFFQPQGREPSYARQLFQEVMTRGTASSPSYRFI----LN 80 (132)
T ss_dssp CEEEEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHH-HHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEE----CT
T ss_pred eeeEEeecCCCcEEEEecccc-cccccccHHHHHHHHHH-HHhCcccchHHHHHHHHHHHHHcCCccccceEEE----ec
Confidence 344566799999999999887 477777 899999999 999999966 88888888887655444445554 46
Q ss_pred CCcEEEEEEEEEEeecC
Q 001353 704 QHSVVYILVNACTSRDY 720 (1093)
Q Consensus 704 dG~~~~v~v~~~pi~d~ 720 (1093)
+|+.+|+...+..+++.
T Consensus 81 ~g~~V~~qT~sk~f~np 97 (132)
T 1oj5_A 81 DGTMLSAHTRCKLCYPQ 97 (132)
T ss_dssp TSCEEEEEEEEEEECC-
T ss_pred CCcEEEEEEEEEEecCC
Confidence 99999999999888875
No 201
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=95.89 E-value=0.018 Score=60.37 Aligned_cols=74 Identities=14% Similarity=0.210 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHcCCC-CCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhH--------hhhccC----
Q 001353 976 IRLQLVLSDFLHCVVRHAPS-PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLI--------EDMYNG---- 1042 (1093)
Q Consensus 976 ~~L~qVl~nLl~NAik~t~~-~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~--------~~IFe~---- 1042 (1093)
.-|..++.+++.||++..-+ ....|.|.+...+ .++|.|||.|||.+.. +-+|..
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g------------~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag 101 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN------------SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 101 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTS------------CEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCS
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC------------cEEEEECCcCcccccccccCcchhhheeeecccC
Confidence 46889999999999987322 0257777764432 3889999999998864 344532
Q ss_pred --CCC----CCCC-ccchHHHHHHHH
Q 001353 1043 --RNQ----WTTP-EGLGLKLSRKLL 1061 (1093)
Q Consensus 1043 --F~~----~~~G-tGLGL~ivr~iv 1061 (1093)
|.. ...| .|.|++.+-.+-
T Consensus 102 ~Kfd~~~yk~SgGlhGvG~svvNAlS 127 (220)
T 4duh_A 102 GKFDDNSYKVSGGLHGVGVSVVNALS 127 (220)
T ss_dssp SCCCTTC--------CCCHHHHHHTE
T ss_pred CCcCCCccccccCccceecchhcccc
Confidence 211 1122 789999986543
No 202
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=95.56 E-value=0.0033 Score=66.91 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCC---------------CCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCC
Q 001353 980 LVLSDFLHCVVRHAP---------------SPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGR 1043 (1093)
Q Consensus 980 qVl~nLl~NAik~t~---------------~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F 1043 (1093)
.+|.+|+.||+++.. .....|.|.+.... -.|+|.|||.||+++++...|..+
T Consensus 35 ~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~-----------~~i~I~DnG~GMt~edl~~~l~~i 102 (236)
T 2gqp_A 35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-----------NLLHVTDTGVGMTREELVKNLGTI 102 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT-----------TEEEEEECSCCCCHHHHHHHHHCC
T ss_pred HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCC-----------CEEEEEECCcCCCHHHHHHHHhhh
Confidence 788999999998742 11234555443222 257899999999999988777653
No 203
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=95.52 E-value=0.031 Score=63.93 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHcC---CCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhh--------HhhhccC--
Q 001353 976 IRLQLVLSDFLHCVVRHA---PSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL--------IEDMYNG-- 1042 (1093)
Q Consensus 976 ~~L~qVl~nLl~NAik~t---~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~--------~~~IFe~-- 1042 (1093)
.-|.+++.+++.||++.. +. ...|.|.+...++ .++|.|||.|||.+. .+-+|..
T Consensus 51 ~GL~~lv~EivdNsiDe~~~~g~-~~~I~V~i~~~~~-----------~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lh 118 (400)
T 1zxm_A 51 PGLYKIFDEILVNAADNKQRDPK-MSCIRVTIDPENN-----------LISIWNNGKGIPVVEHKVEKMYVPALIFGQLL 118 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CCEEEEEEETTTT-----------EEEEEEESSCCCCSEETTTTEEHHHHHHHSSS
T ss_pred chHHHHHHHHHhhHHhHHhhcCC-CceEEEEEECCCC-----------EEEEEECCCcccCccccccCccchhheeeeec
Confidence 458899999999999875 32 4688888766433 488899999999886 3445552
Q ss_pred ----C----CCCC-CCccchHHHHHHH
Q 001353 1043 ----R----NQWT-TPEGLGLKLSRKL 1060 (1093)
Q Consensus 1043 ----F----~~~~-~GtGLGL~ivr~i 1060 (1093)
| |... +=.|.|++.+-.+
T Consensus 119 agsKf~~~~ykvSgGlhGvGlsvVnAl 145 (400)
T 1zxm_A 119 TSSNYDDDEKKVTGGRNGYGAKLCNIF 145 (400)
T ss_dssp EESCCCGGGCCCCSCCSSCHHHHHHHT
T ss_pred ccCCCCCCcccccCCccccceeeeEEe
Confidence 2 1122 2379999999655
No 204
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=95.47 E-value=0.022 Score=59.89 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHHHHHHHcCCC-CCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhh-------HhhhccC---
Q 001353 974 DRIRLQLVLSDFLHCVVRHAPS-PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL-------IEDMYNG--- 1042 (1093)
Q Consensus 974 D~~~L~qVl~nLl~NAik~t~~-~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~-------~~~IFe~--- 1042 (1093)
+..-|.+++.+++.||++..-+ ....|.|.+...+ .++|.|||.|||.+. .+-+|..
T Consensus 37 ~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g------------~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lha 104 (226)
T 4emv_A 37 DGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDG------------SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHA 104 (226)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS------------CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC-
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCC------------eEEEEEcCCCccccccccCceehheeEEeecc
Confidence 3456889999999999987432 1246776654322 389999999999987 5666642
Q ss_pred ---CCC----C-CCCccchHHHHHHH
Q 001353 1043 ---RNQ----W-TTPEGLGLKLSRKL 1060 (1093)
Q Consensus 1043 ---F~~----~-~~GtGLGL~ivr~i 1060 (1093)
|-. . .+=.|.|++.+-.+
T Consensus 105 g~Kfd~~~yk~SgGlhGvG~svvNAL 130 (226)
T 4emv_A 105 GGKFGQGGYKTSGGLHGVGSSVVNAL 130 (226)
T ss_dssp -------------CGGGCCHHHHHHT
T ss_pred cCccCccceEeccccccccchhhhhc
Confidence 211 1 22279999988544
No 205
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=95.27 E-value=0.028 Score=63.64 Aligned_cols=49 Identities=12% Similarity=0.010 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCCC-CCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChh
Q 001353 974 DRIRLQLVLSDFLHCVVRHAPS-PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSH 1034 (1093)
Q Consensus 974 D~~~L~qVl~nLl~NAik~t~~-~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e 1034 (1093)
+..-|..++.+|+.||++..-+ ....|.|.+...+ .++|.|||.|||.|
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g------------~I~V~DnGrGIp~e 76 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG------------SIALFCTSRTVTAE 76 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS------------CEEEEEEESSCCHH
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCC------------EEEEEECCCCcCHh
Confidence 4567899999999999997322 0246777664332 48999999999983
No 206
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=94.90 E-value=0.055 Score=62.16 Aligned_cols=72 Identities=17% Similarity=0.335 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHcC---CCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhh--------hccC---
Q 001353 977 RLQLVLSDFLHCVVRHA---PSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIED--------MYNG--- 1042 (1093)
Q Consensus 977 ~L~qVl~nLl~NAik~t---~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~--------IFe~--- 1042 (1093)
-|.+++.++|.||++.. +. ...|.|.+...++ .++|.|||.|||.+..+. +|..
T Consensus 64 GL~~lv~EivdNaiDe~~~~g~-~~~I~V~i~~d~~-----------sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~Lha 131 (418)
T 1pvg_A 64 GLFKIFDEILVNAADNKVRDPS-MKRIDVNIHAEEH-----------TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLT 131 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CCEEEEEEETTTT-----------EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSE
T ss_pred hHHHHHHHHHhCHHHHHHhcCC-CCEEEEEEECCCC-----------EEEEEECCCcccCcccccCCcccceEEEEEEec
Confidence 58889999999999654 32 4688888876544 478889999999876443 4433
Q ss_pred ---C----CC-CCCCccchHHHHHHH
Q 001353 1043 ---R----NQ-WTTPEGLGLKLSRKL 1060 (1093)
Q Consensus 1043 ---F----~~-~~~GtGLGL~ivr~i 1060 (1093)
| |. ..+=.|.|.+.|-.+
T Consensus 132 GgKfd~~~ykvSGGLhGVG~SvVNAL 157 (418)
T 1pvg_A 132 SSNYDDDEKKVTGGRNGYGAKLCNIF 157 (418)
T ss_dssp ESCCCTTSCCCCSCCSSCHHHHHHHT
T ss_pred ccccCCCceeccCCccceeeeeeeec
Confidence 2 12 223379999998544
No 207
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=94.70 E-value=0.085 Score=47.99 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc-cccc
Q 001353 860 YAKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDG-MDLR 920 (1093)
Q Consensus 860 ~~k~~~la~isHELrnPLt~I~g~~~LL~~~~l~~~~~~~l~~i~~~~~rl~~lI~d-Ldls 920 (1093)
..+.+++..++|++++|++.|.++.+.+... ..+..+.+...+.+|..++++ ++++
T Consensus 58 ~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (115)
T 3zrx_A 58 DDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYL 114 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999987653 245677888889999999998 4654
No 208
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=94.40 E-value=0.054 Score=64.42 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcC---------------CCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCC
Q 001353 980 LVLSDFLHCVVRHA---------------PSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRN 1044 (1093)
Q Consensus 980 qVl~nLl~NAik~t---------------~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~ 1044 (1093)
.+|.+||.||+++. ++....|.|.+...+. .|+|.|||+||+++.+..-|...-
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~-----------~I~I~DnGiGMt~edl~~~l~tiA 98 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-----------TLTISDNGVGMTRDEVIDHLGTIA 98 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTT-----------EEEEEECSSCCCHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCc-----------EEEEEECCCCCCHHHHHHHHhhhc
Confidence 68899999999875 1212466666533322 578889999999999776555421
Q ss_pred C-------------------CCCCccchHHHHHHHH
Q 001353 1045 Q-------------------WTTPEGLGLKLSRKLL 1061 (1093)
Q Consensus 1045 ~-------------------~~~GtGLGL~ivr~iv 1061 (1093)
+ ..+.-|+|++.+..++
T Consensus 99 ~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (559)
T 1y4s_A 99 KSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (559)
T ss_dssp CCCCCCTTCC--------CCCCSSCCCSGGGHHHHE
T ss_pred ccccHHHHHHhhccccccccccCCCCcchhhhhhcc
Confidence 1 1234599988776653
No 209
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=94.06 E-value=0.04 Score=56.71 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCC-CCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhh
Q 001353 974 DRIRLQLVLSDFLHCVVRHAPSP-DGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035 (1093)
Q Consensus 974 D~~~L~qVl~nLl~NAik~t~~~-~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~ 1035 (1093)
+...|..++.+++.||++..-++ ...|.|.+...+ .++|.|||.|||.+.
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g------------~i~V~DnG~Gip~~~ 78 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDN------------WIKVTDNGRGIPVDI 78 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGG------------EEEEEECSSCCCCSB
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCC------------eEEEEECCCCccccc
Confidence 45678899999999999863221 367888765432 488999999999873
No 210
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=93.85 E-value=0.031 Score=60.31 Aligned_cols=72 Identities=11% Similarity=0.156 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCC-------------CCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhcc----C
Q 001353 980 LVLSDFLHCVVRHAP-------------SPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYN----G 1042 (1093)
Q Consensus 980 qVl~nLl~NAik~t~-------------~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe----~ 1042 (1093)
-.|.+||.||.++.. ..++.+.|.+....+ .-.|+|.|||+||+++.+..-+. .
T Consensus 49 ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~---------~~tLtI~DNGiGMt~edL~~~LgtIa~S 119 (281)
T 3peh_A 49 VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKE---------KNILSITDTGIGMTKVDLINNLGTIAKS 119 (281)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCC---------CcEEEEEeCCCCCCHHHHHHHHHHHHhH
Confidence 567999999987631 112334444433332 12578889999999988653221 1
Q ss_pred --------------CCCCCCCccchHHHHHHH
Q 001353 1043 --------------RNQWTTPEGLGLKLSRKL 1060 (1093)
Q Consensus 1043 --------------F~~~~~GtGLGL~ivr~i 1060 (1093)
-....+.-|+|++.+..+
T Consensus 120 gtk~f~e~l~~~~~d~~~IGqFGVGFySaf~v 151 (281)
T 3peh_A 120 GTSNFLEAISKSGGDMSLIGQFGVGFYSAFLV 151 (281)
T ss_dssp CHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGT
T ss_pred hhhhHHHhhhccccccccccccCccchhhccc
Confidence 011445679999887554
No 211
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=93.61 E-value=0.036 Score=58.32 Aligned_cols=72 Identities=10% Similarity=0.173 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCC-------------CCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-
Q 001353 980 LVLSDFLHCVVRHAP-------------SPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ- 1045 (1093)
Q Consensus 980 qVl~nLl~NAik~t~-------------~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~- 1045 (1093)
-+|.+|+.||+++.. ..++.+.|.+....+ .-.|+|.|||.||+++.+..-|.+..+
T Consensus 35 ~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~---------~~~i~V~DnG~GMs~edl~~~l~~ia~S 105 (228)
T 3t0h_A 35 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQ---------DRTLTIVDTGIGMTKADLINNLGTIAKS 105 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHTGGGSCHHH
T ss_pred HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCC---------eeEEEEEeCCCCCCHHHHHHHHHhhccc
Confidence 678999999987631 012344555444332 225788999999999998765544211
Q ss_pred ----------------CCCCccchHHHHHHH
Q 001353 1046 ----------------WTTPEGLGLKLSRKL 1060 (1093)
Q Consensus 1046 ----------------~~~GtGLGL~ivr~i 1060 (1093)
..+-.|+||+.+-.+
T Consensus 106 ~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~v 136 (228)
T 3t0h_A 106 GTKAFMEALQAGADISMIGQFGVGFYSAYLV 136 (228)
T ss_dssp HHHHHHHHHHTTCCGGGGGGGTCGGGGGGGT
T ss_pred cchhhhhhhcccCCcccCCCCChhHHHHhcc
Confidence 123468999877443
No 212
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=92.92 E-value=0.13 Score=58.76 Aligned_cols=70 Identities=16% Similarity=0.298 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCCC-CCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhH--------hhhccC------C
Q 001353 979 QLVLSDFLHCVVRHAPS-PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLI--------EDMYNG------R 1043 (1093)
Q Consensus 979 ~qVl~nLl~NAik~t~~-~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~--------~~IFe~------F 1043 (1093)
..++.+++.||++..-+ ....|.|.+...+ .++|.|||.|||.+.. +-+|.. |
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i~~dg------------sI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKf 119 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTLYKDG------------SCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKF 119 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECTTS------------CEEEEECSSCCCCSBCTTTCSBHHHHHHHCC------
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEEeCCC------------eEEEEEcCCCCCcccccccCCcchheEEEecccCCCc
Confidence 67888999999876322 1246777764322 3889999999998764 344522 2
Q ss_pred C----CCCCC-ccchHHHHHHH
Q 001353 1044 N----QWTTP-EGLGLKLSRKL 1060 (1093)
Q Consensus 1044 ~----~~~~G-tGLGL~ivr~i 1060 (1093)
- ...+| .|.|++.|-.+
T Consensus 120 d~~~ykvSgGlhGvG~svVNAL 141 (408)
T 3lnu_A 120 NNRNYTFSGGLHGVGVSVVNAL 141 (408)
T ss_dssp --------------CHHHHHHT
T ss_pred CCCceeecCCccccccceehhc
Confidence 1 12223 79999988544
No 213
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=92.57 E-value=0.037 Score=59.03 Aligned_cols=73 Identities=10% Similarity=0.155 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCC-------------CCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccC----
Q 001353 980 LVLSDFLHCVVRHAP-------------SPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNG---- 1042 (1093)
Q Consensus 980 qVl~nLl~NAik~t~-------------~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~---- 1042 (1093)
-+|.+||.||.++.. ..+..+.|.+....+ .-.|+|.|||.||+++.+..-|..
T Consensus 63 iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~---------~~~I~I~DnG~GMt~edl~~~l~~ia~S 133 (256)
T 3o0i_A 63 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQ---------DRTLTIVDTGIGMTKADLINNLGTIAKS 133 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHTHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCC---------ceEEEEecCCCCcCHHHHHHHHHhhccc
Confidence 678999999987631 012344444443332 225889999999999987543322
Q ss_pred ----C-------C--CCCCCccchHHHHHHHH
Q 001353 1043 ----R-------N--QWTTPEGLGLKLSRKLL 1061 (1093)
Q Consensus 1043 ----F-------~--~~~~GtGLGL~ivr~iv 1061 (1093)
| . ...+-.|+||+.+..+.
T Consensus 134 ~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Va 165 (256)
T 3o0i_A 134 GTKAFMEALQAGADISMIGQFGVGFYSAYLVA 165 (256)
T ss_dssp HHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTE
T ss_pred cccchhhhhcccCCccccCCCcchHHHhhccC
Confidence 0 0 12345689998775443
No 214
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=91.33 E-value=0.19 Score=60.84 Aligned_cols=52 Identities=15% Similarity=0.293 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCC---------------CCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccC
Q 001353 980 LVLSDFLHCVVRHAP---------------SPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNG 1042 (1093)
Q Consensus 980 qVl~nLl~NAik~t~---------------~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~ 1042 (1093)
-+|.+||.||+++.. .....|.|.+...+. .|+|.|||+||+.+.+..-|..
T Consensus 29 ifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~-----------~I~I~DnGiGMt~edl~~~l~t 95 (677)
T 2cg9_A 29 IFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQK-----------VLEIRDSGIGMTKAELINNLGT 95 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGT-----------EEEEEECSCCCCHHHHHGGGSS
T ss_pred HHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCC-----------EEEEEECCCCCCHHHHHHHHHh
Confidence 588999999997741 112345555433222 5889999999999987665543
No 215
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=90.88 E-value=0.11 Score=54.85 Aligned_cols=73 Identities=11% Similarity=0.162 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCC-------------CCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccC----
Q 001353 980 LVLSDFLHCVVRHAP-------------SPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNG---- 1042 (1093)
Q Consensus 980 qVl~nLl~NAik~t~-------------~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~---- 1042 (1093)
-.|.+|+.||.++.. ..++.+.|.+....+ .-.|+|.|||+||+++.+..-+..
T Consensus 42 ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~---------~~~L~I~DnGiGMt~edL~~~LgtIA~S 112 (239)
T 3nmq_A 42 IFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQ---------ERTLTLVDTGIGMTKADLINNLGTIAKS 112 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHTHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCC---------ccEEEEEeCCCCCCHHHHHHHHHHHhcc
Confidence 678999999986621 112334444444333 235889999999999887332210
Q ss_pred ----C---------CCCCCCccchHHHHHHHH
Q 001353 1043 ----R---------NQWTTPEGLGLKLSRKLL 1061 (1093)
Q Consensus 1043 ----F---------~~~~~GtGLGL~ivr~iv 1061 (1093)
| ....+.-|+|++.+..+.
T Consensus 113 gtk~f~e~~~~~~d~~~IGqFGvGfySaf~va 144 (239)
T 3nmq_A 113 GTKAFMEALQAGADISMIGQFGVGFYSAYLVA 144 (239)
T ss_dssp HHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTE
T ss_pred cchhhhhhhcccCCcccccccCcccccccccC
Confidence 1 013345799998875543
No 216
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=90.28 E-value=6.2 Score=37.18 Aligned_cols=138 Identities=17% Similarity=0.229 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCC-ccCC----ccCCCCchHHHHHhHhcCCeEEEec
Q 001353 230 DIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEP-YLGI----HFPANDIPQAARFLFKQNRVRMICD 304 (1093)
Q Consensus 230 ~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~-~lg~----~~p~~dip~~~r~l~~~~~~r~i~d 304 (1093)
+.++..+....-.+++.|+-=..||-||.+-.-- |-+++-++|+ ||-+ ..-..-||---.-|-.++.+ +..|
T Consensus 13 ~vd~~~~~l~rll~k~~~~~w~~vy~~drerrdf--~~~rs~~~pa~~l~~~r~mpl~p~k~pllk~~lr~~~hl-l~~d 89 (162)
T 3eea_A 13 DVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDF--APARSTGLPASFLPVFREMPLAPDKIPLLKSMLRKRQHL-MLTD 89 (162)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEEEEECC--CSE--EEEEEESCCGGGHHHHHHCCBCTTTCHHHHHHHHHTCCE-EESC
T ss_pred cHHHHHHHHHHHHHHHhCCceEEEEEeehhhhcc--ccccccCCchhhhHHHhhCCCCCCccHHHHHHHHhcCcc-ccCC
Confidence 7888888888889999999999999999765443 3333333332 2211 11011233322222222221 1111
Q ss_pred CCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCC-CCCchHHH
Q 001353 305 CHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPR-YIPFPLRY 383 (1093)
Q Consensus 305 ~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~-~~~~~~r~ 383 (1093)
-+.|+| ..|--.++++|+.+-| ||+++++ +.=|.+.+-...+| .++.+++.
T Consensus 90 -------------------p~~s~l--~tp~l~k~~~~~~ILg---VPL~~g~----qVIGVLFaArR~~R~~Fs~dEiA 141 (162)
T 3eea_A 90 -------------------PGSSDL--LTPKLRKLLRNLCVLA---VPMVVRT----QVIGAVFMARTRDNPPFSDAETA 141 (162)
T ss_dssp -------------------GGGCTT--SCHHHHHHTTTEEEEE---EEEEETT----EEEEEEEEEEETTSCCCCHHHHH
T ss_pred -------------------CCcchh--ccHHHHHHHhhCeEEE---ecceeCC----EEEEEEEEecccccCCCCHHHHH
Confidence 122222 2488899999998877 9999999 99999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHH
Q 001353 384 ACEFLVQAFSLQLYM 398 (1093)
Q Consensus 384 ~~~~l~~~~~~~l~~ 398 (1093)
+...++.+.++.++.
T Consensus 142 LL~SLAahAAIAIdn 156 (162)
T 3eea_A 142 IIRDLVSHAALVVSH 156 (162)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998854
No 217
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=90.00 E-value=0.25 Score=59.49 Aligned_cols=71 Identities=11% Similarity=0.127 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcC---------------CCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCC
Q 001353 980 LVLSDFLHCVVRHA---------------PSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRN 1044 (1093)
Q Consensus 980 qVl~nLl~NAik~t---------------~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~ 1044 (1093)
.+|.+||.||+++. ++....|.|.+..... .|+|.|||+||+++.+..-|...-
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~-----------~I~I~DnGiGMt~edl~~~l~tiA 98 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-----------TLTISDNGVGMTRDEVIDHLGTIA 98 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTT-----------EEEEEECSCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCc-----------EEEEEECCCCCCHHHHHHHHHhhc
Confidence 78999999999875 1212456665533322 578889999999998765443311
Q ss_pred -CC------------------CCCccchHHHHHHHH
Q 001353 1045 -QW------------------TTPEGLGLKLSRKLL 1061 (1093)
Q Consensus 1045 -~~------------------~~GtGLGL~ivr~iv 1061 (1093)
++ .+.-|+|++.+..+.
T Consensus 99 ~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (624)
T 2ioq_A 99 KSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (624)
T ss_dssp C---------------CCTTHHHHHHHHHHHHHHHE
T ss_pred ccccHHHHHHhcccccccccccCCCCccHHHHHhcC
Confidence 10 012489998887665
No 218
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=89.46 E-value=0.32 Score=58.84 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=39.4
Q ss_pred EEecHHHHHHHHHHHHHHHHHcC---------------CCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhh
Q 001353 971 LNGDRIRLQLVLSDFLHCVVRHA---------------PSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035 (1093)
Q Consensus 971 v~~D~~~L~qVl~nLl~NAik~t---------------~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~ 1035 (1093)
+|.++. .+|.+||.||+++. .+....|.|.+..... .|+|.|||+||+.+.
T Consensus 42 LYsn~e---ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~-----------~I~I~DnGiGMt~ed 107 (666)
T 2o1u_A 42 LYKNKE---IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKN-----------LLHVTDTGVGMTREE 107 (666)
T ss_dssp TSSSCT---THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTT-----------EEEEEECSCCCCHHH
T ss_pred ccCCch---HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCC-----------EEEEEECCCCCCHHH
Confidence 555653 68999999999875 1212456555433322 478999999999998
Q ss_pred HhhhccC
Q 001353 1036 IEDMYNG 1042 (1093)
Q Consensus 1036 ~~~IFe~ 1042 (1093)
+..-|..
T Consensus 108 l~~~l~t 114 (666)
T 2o1u_A 108 LVKNLGT 114 (666)
T ss_dssp HHHHTTC
T ss_pred HHHHHhh
Confidence 7665543
No 219
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=84.06 E-value=13 Score=37.83 Aligned_cols=125 Identities=10% Similarity=0.035 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcCc--cEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceE
Q 001353 615 SVACEMVRLIETATA--PIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNV 692 (1093)
Q Consensus 615 ~~~~~l~~lie~~~~--~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~ 692 (1093)
.....|..+.+..+. .++++|.+|+++..+.. ...+ ....+++++...+ ..+...-.
T Consensus 55 ~~~~~L~~~~~~~~~~~~i~i~d~~G~~~~~~~~----------~~~~-------~~~~~r~~f~~a~----~~~~~~is 113 (217)
T 4dah_A 55 KMQSILEKTFDSEPRFSGLYFLNAKGDVTASTTE----------LKTK-------VNLADRSFFIKAK----ETKKTVIS 113 (217)
T ss_dssp HHHHHHHHHHTTCTTEEEEEEEETTCBEEEESSC----------CSSC-------CBCTTSHHHHHHH----HHCSCEEC
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCcEEEecCC----------CCCC-------CCcchhHHHHHHH----hcCCcEEe
Confidence 444556666666554 68889999999876430 1011 1223445555544 32222110
Q ss_pred EEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHHhcCCCCCceEEecCCC
Q 001353 693 ELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENA 772 (1093)
Q Consensus 693 e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se~~lr~i~~~~~~li~~I~~~D~~g 772 (1093)
+ .+. -...|. ++..-+.|+++.+|++.|++++..|+...... + ..+ ... .-++++|.+|
T Consensus 114 ~-~~~---~~~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~~l~~~---~-------~~~--~~g---g~~~l~d~~G 172 (217)
T 4dah_A 114 D-SYS---SRITGQ--PIFTICVPVLDSKRNVTDYLVAAIQIDYLKNL---I-------NLL--SPD---VYIEVVNQDG 172 (217)
T ss_dssp C-CEE---CTTTCS--EEEEEEEEEECTTSCEEEEEEEEEEHHHHHHH---H-------HHH--CTT---SCEEEEETTS
T ss_pred c-eEE---cCCCCC--EEEEEEEEEECCCCCEEEEEEEEEcHHHHHHH---H-------Hhc--CCC---cEEEEEcCCC
Confidence 1 011 112344 66777889999899999999987776543222 1 111 011 2589999999
Q ss_pred cEeechhhh
Q 001353 773 CCSEWNAAM 781 (1093)
Q Consensus 773 ~i~~~N~a~ 781 (1093)
.++......
T Consensus 173 ~ii~~~~~~ 181 (217)
T 4dah_A 173 KMIFASGQA 181 (217)
T ss_dssp CEEEEESCG
T ss_pred CEEEeCCCC
Confidence 888765443
No 220
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=83.51 E-value=0.35 Score=51.16 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=28.2
Q ss_pred EEEEecCCCCCChhhHhhhccCCCC------------------CCCCccchHHHHHHH
Q 001353 1021 QFRLTHPGEGIPSHLIEDMYNGRNQ------------------WTTPEGLGLKLSRKL 1060 (1093)
Q Consensus 1021 ~l~V~DnG~GIp~e~~~~IFe~F~~------------------~~~GtGLGL~ivr~i 1060 (1093)
.|+|.|||+||+++.+..-+....+ ..+.-|+|++.+-.+
T Consensus 131 tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmV 188 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLV 188 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGT
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeecc
Confidence 5889999999999988765533111 224579999887543
No 221
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=83.51 E-value=2.1 Score=40.53 Aligned_cols=78 Identities=5% Similarity=-0.045 Sum_probs=55.4
Q ss_pred eEEecCCCcEeechhhhHHHhCCCc--chhcc------cc------------------CCCccceeeEEEccCCcEEEEE
Q 001353 765 IFASDENACCSEWNAAMEKVTGWMR--HEVIG------IT------------------GQGTENFPFGFFNRQGQFVEVA 818 (1093)
Q Consensus 765 I~~~D~~g~i~~~N~a~~~l~G~~~--eEliG------~~------------------~~~~~~~e~~~~~kdG~~~~v~ 818 (1093)
+.-.|.+|+|+++..+.. ..++.+ +|++| .. .+......|+|+.++|.++|+.
T Consensus 10 ~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~V~~q 88 (132)
T 1oj5_A 10 MTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAH 88 (132)
T ss_dssp EEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEEE
T ss_pred EEeecCCCcEEEEecccc-cccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcEEEEE
Confidence 556799999999999887 467777 89998 11 1222445689999999999999
Q ss_pred EEEeEeecC-CCcEEEEEEEEeeccc
Q 001353 819 LTASRRTDA-EGKVIGCFCFMQILVP 843 (1093)
Q Consensus 819 ~~~~~i~d~-~G~v~g~i~~~~DITe 843 (1093)
.....+++. .+++-.++++-.-+.+
T Consensus 89 T~sk~f~np~t~e~e~Ivs~n~v~r~ 114 (132)
T 1oj5_A 89 TRCKLCYPQSPDMQPFIMGIHIIDRE 114 (132)
T ss_dssp EEEEEECC----CCCEEEEEEEEECC
T ss_pred EEEEEecCCCCCCCCEEEEEEEEEcC
Confidence 988888875 3444555565554444
No 222
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=82.32 E-value=8.6 Score=40.26 Aligned_cols=146 Identities=9% Similarity=-0.032 Sum_probs=86.1
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCC
Q 001353 219 AISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNR 298 (1093)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~ 298 (1093)
.+.++.+ +.+.+++.+.+ ..+.+.+|||++..+-+.+...+ .+ ..++ .+..|+...+.|..+.
T Consensus 8 ~~~~l~~--a~~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~-------~~--~~~i-----~~~~p~~w~~~Y~~~~ 70 (237)
T 3szt_A 8 YLEILSR--ITTEEEFFSLV-LEICGNYGFEFFSFGARAPFPLT-------AP--KYHF-----LSNYPGEWKSRYISED 70 (237)
T ss_dssp HHHHHHH--CCSHHHHHHHH-HHHHHHTTCSEEEEEEECCCSTT-------SC--CEEE-----EECCCHHHHHHHHHTT
T ss_pred HHHHHHc--CCCHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCC-------CC--CeEe-----eCCCCHHHHHHHHHCC
Confidence 4566777 45888888887 78888999999998877653221 00 1111 2345777888888776
Q ss_pred eEEEecCCCCCccccc-ccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCCCC
Q 001353 299 VRMICDCHAIPVMVIQ-SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYI 377 (1093)
Q Consensus 299 ~r~i~d~~~~~~~l~~-~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~~~ 377 (1093)
...| . |++. .-....|+.-+....+. .+--.++.+.+|++.-+++|+...+ ..+|+++.....+. .
T Consensus 71 y~~~-----D--Pv~~~~~~~~~p~~W~~~~~~~-~~~~~~~a~~~gl~~G~~~p~~~~~----g~~g~ls~~~~~~~-~ 137 (237)
T 3szt_A 71 YTSI-----D--PIVRHGLLEYTPLIWNGEDFQE-NRFFWEEALHHGIRHGWSIPVRGKY----GLISMLSLVRSSES-I 137 (237)
T ss_dssp GGGT-----C--HHHHHHHHSCSCEEEETTTCSS-CHHHHHHHHHTTCCEEEEEEEECGG----GCEEEEEEEESSSC-C
T ss_pred Cccc-----C--hHhhhhcCCCCCEEeCCCCccc-HHHHHHHHHHcCCCCEEEEEeeCCC----CCeEEEEEecCCCc-C
Confidence 5322 1 1111 01112233332222222 2455678889999999999998655 88999998765543 3
Q ss_pred CchHHHHHHHHHHHHHH
Q 001353 378 PFPLRYACEFLVQAFSL 394 (1093)
Q Consensus 378 ~~~~r~~~~~l~~~~~~ 394 (1093)
...+....+...+.++.
T Consensus 138 ~~~~~~~~~~~~~~l~~ 154 (237)
T 3szt_A 138 AATEILEKESFLLWITS 154 (237)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 44444444333444433
No 223
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=80.54 E-value=1.7 Score=56.10 Aligned_cols=73 Identities=15% Similarity=0.277 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHcCCCC--CCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhH--------hhhccC----
Q 001353 977 RLQLVLSDFLHCVVRHAPSP--DGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLI--------EDMYNG---- 1042 (1093)
Q Consensus 977 ~L~qVl~nLl~NAik~t~~~--~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~--------~~IFe~---- 1042 (1093)
-|..++.+.|.||++..-++ ...|.|.+...++ .++|.|||.|||-+.. +-||..
T Consensus 59 GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~d~-----------sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAG 127 (1177)
T 4gfh_A 59 GLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH-----------TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS 127 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT-----------EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEE
T ss_pred eeeeEeeEEEEChHhHHhhCCCCCeEEEEEECCCC-----------EEEEEecCCcccccccCCCCCEeeeeeccccccc
Confidence 47888899999999753221 2468888776555 4788899999996533 334443
Q ss_pred --CC----C-CCCCccchHHHHHHH
Q 001353 1043 --RN----Q-WTTPEGLGLKLSRKL 1060 (1093)
Q Consensus 1043 --F~----~-~~~GtGLGL~ivr~i 1060 (1093)
|- . .++=.|.|.+.|-.+
T Consensus 128 gKFd~~~ykvSGGLHGVG~svVNAL 152 (1177)
T 4gfh_A 128 SNYDDDEKKVTGGRNGYGAKLCNIF 152 (1177)
T ss_dssp SCCCCSSCCCCSCCSSCHHHHHHHT
T ss_pred cCcCCCCCeEeccCCChhhhHHhhc
Confidence 21 1 223379999988554
No 224
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=78.91 E-value=4.3 Score=38.04 Aligned_cols=119 Identities=15% Similarity=0.131 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCeEEEecCCCCCccccc
Q 001353 235 CDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ 314 (1093)
Q Consensus 235 ~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~~~l~~ 314 (1093)
++..++-+.+.||+ =|.|- +.-.|+|=+-.+ -..|+| ..|+...++....+++.++.+... .++..
T Consensus 4 a~~~AeiI~~~~~~-aV~It-----D~~~ilA~~G~g-~~~~~~-----~~is~~~~~~i~~~k~~~~~~~~~--~~~~~ 69 (123)
T 2w1r_A 4 AKEYADALYDSLGH-SVLIC-----DRDVYIAVSGSS-KKDYLN-----KSISEMLERTMDQRSSVLESDAKS--VQLVN 69 (123)
T ss_dssp HHHHHHHHHHHHCS-EEEEE-----CSSBEEEEESSC-HHHHBT-----CBBCHHHHHHHHHCSCEEESSCEE--EESBT
T ss_pred HHHHHHHHHHHHCC-eEEEE-----cCccEEEEEecC-hhhcCC-----CccCHHHHHHHHcCCEEEEcCCcc--ccccC
Confidence 45566678888999 77764 122345433222 123333 456888899999999998865443 22110
Q ss_pred ccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCCCCCchHHHHHHHHHHHHHH
Q 001353 315 SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSL 394 (1093)
Q Consensus 315 ~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~~~~~~~r~~~~~l~~~~~~ 394 (1093)
++ .| ...|.+++||+.+| +.=|.|.-- +..+.+...++.+++-+|+.||.
T Consensus 70 ~~-----------------~~--------~~~s~ii~PI~~~g----~viG~i~l~-~~~~~~~~~~~~la~gla~lls~ 119 (123)
T 2w1r_A 70 GI-----------------DE--------DMNSYTVGPIVANG----DPIGAVVIF-SKDQTMGEVEHKAVETAAGFLAR 119 (123)
T ss_dssp TC-----------------EE--------EESEEEEEEEEETT----EEEEEEEEE-ESSSCCCHHHHHHHHHHHHHHC-
T ss_pred CC-----------------CC--------CeeEEEEEEEEECC----EEEEEEEEE-EcCCCCCHHHHHHHHHHHHHHHH
Confidence 00 11 24889999999998 999998877 66666999999999999999999
Q ss_pred HHH
Q 001353 395 QLY 397 (1093)
Q Consensus 395 ~l~ 397 (1093)
||.
T Consensus 120 Qme 122 (123)
T 2w1r_A 120 QME 122 (123)
T ss_dssp ---
T ss_pred Hhc
Confidence 984
No 225
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=76.42 E-value=39 Score=34.98 Aligned_cols=58 Identities=9% Similarity=0.008 Sum_probs=39.6
Q ss_pred EEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHHhcCCCC-CceEEecCCCcEeechh
Q 001353 708 VYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLI-PPIFASDENACCSEWNA 779 (1093)
Q Consensus 708 ~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se~~lr~i~~~~~~li-~~I~~~D~~g~i~~~N~ 779 (1093)
.|+..-+.|+++.+|++.|++++..|+.. +..++....... .-++++|.+|.++.-.+
T Consensus 125 ~~~i~~~~pi~~~~g~~~Gvl~~~i~l~~--------------l~~~~~~~~~~~~g~~~l~d~~G~ii~~~p 183 (254)
T 3lif_A 125 VWVFVVSRRLETTDGKFFGVVVATIESEY--------------FSTFYKTFDLGPGGSISLLHSDGRLLIQWP 183 (254)
T ss_dssp CEEEEEEEEEECTTCCEEEEEEEEECHHH--------------HHHHHTTSCCCTTCEEEEEETTSBEEEEET
T ss_pred cEEEEEEeeeeCCCCCEeEEEEEEECHHH--------------HHHHHHhcCcCCCcEEEEEeCCCcEEEECC
Confidence 46667788999999999999998777532 222333332111 14789999999998744
No 226
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=72.55 E-value=3 Score=46.40 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=40.7
Q ss_pred CccE-EEECC-CCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHH
Q 001353 628 TAPI-FGVDS-SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENL 679 (1093)
Q Consensus 628 ~~~I-~~~D~-dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~ 679 (1093)
|.|+ +++|. +++|+.+|..+++++|+++++++|+++. ++++++..+.+...
T Consensus 41 p~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~llG~~l~-~ll~~~~~~~l~~~ 93 (337)
T 2ool_A 41 PHGYLFVVSETDLRIASVSANVEDLLRQPPASLLNVPIA-HYLTAASAARLTHA 93 (337)
T ss_dssp TTSEEEEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGG-GGBCHHHHHHHHHH
T ss_pred CCEEEEEEECCCCEEEEEehhHHHHHCcCHHHHcCCCHH-HHcCHHHHHHHHHH
Confidence 3454 44565 4899999999999999999999999998 88888766654443
No 227
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=71.45 E-value=27 Score=37.96 Aligned_cols=119 Identities=11% Similarity=0.049 Sum_probs=66.0
Q ss_pred HHHHHHHHhc-CccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEE
Q 001353 618 CEMVRLIETA-TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKL 696 (1093)
Q Consensus 618 ~~l~~lie~~-~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l 696 (1093)
+.+..+.+.. -..++++|.+|+++..+.. -.+...+|.+. .+++++++.+ +++.. ..+.+
T Consensus 102 ~~L~~~~~~~~~~~i~v~d~~G~viass~~------~~p~~~~g~d~-------~~R~yf~~Al----~g~~~--~~~~~ 162 (305)
T 3e4o_A 102 RKLEALATSAEAAVIYLIDRSGVAVAASNW------QEPTSFVGNDY-------AFRDYFRLAV----RDGMA--EHFAM 162 (305)
T ss_dssp HHHHHHHHHSSCSEEEEEETTSBEEEETTT------TSTTCCTTCBC-------TTSHHHHHHH----HHSEE--EEEEE
T ss_pred HHHHHHHhccCccEEEEECCCCCEEEeCCC------cCcccccCCCc-------cccHHHHHHH----hcCCc--EEEEE
Confidence 3344443332 3568999999999876431 01112233322 2445555444 33322 11111
Q ss_pred EEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHHhcCCCCCceEEecCCCcEee
Q 001353 697 RKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSE 776 (1093)
Q Consensus 697 ~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~ 776 (1093)
....|. ++..-+.|+++ +|+++|++++..|+....+. +. .... .++++|.+|.++.
T Consensus 163 ----~~~tg~--~~i~~a~PV~~-~G~viGVv~v~i~l~~l~~~---~~-----------~~~g---~~~l~D~~G~ii~ 218 (305)
T 3e4o_A 163 ----GTVSKR--PGLYISRRVDG-PGGPLGVIVAKLEFDGVEAD---WQ-----------ASGK---PAYVTDRRGIVLI 218 (305)
T ss_dssp ----CTTTCC--EEEEEEEEEEE-TTEEEEEEEEEECCHHHHHH---HH-----------HHTS---CEEEECTTCBEEE
T ss_pred ----ecCCCC--EEEEEEEEEcc-CCeEEEEEEEEEcHHHHHHH---Hh-----------cCCc---eEEEEcCCCeEEE
Confidence 122333 34556778887 49999999998888753321 11 1222 5899999999876
Q ss_pred chh
Q 001353 777 WNA 779 (1093)
Q Consensus 777 ~N~ 779 (1093)
.+.
T Consensus 219 ~~~ 221 (305)
T 3e4o_A 219 TSL 221 (305)
T ss_dssp ESS
T ss_pred eCC
Confidence 543
No 228
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=68.22 E-value=11 Score=35.24 Aligned_cols=77 Identities=21% Similarity=0.148 Sum_probs=45.5
Q ss_pred ccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccCCcEE
Q 001353 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708 (1093)
Q Consensus 629 ~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG~~~ 708 (1093)
+.|+++|.+|..+.... .+.+|+++. ... .+..+++|+.. +... .|...
T Consensus 51 ~~i~v~d~~G~~~a~~~----------~~~iG~~~~----~~~-------~~~~al~G~~~----~~~~------~g~~g 99 (131)
T 1p0z_A 51 TYITVGDASGQRLYHVN----------PDEIGKSME----GGD-------SDEALINAKSY----VSVR------KGSLG 99 (131)
T ss_dssp SEEEEEETTSBEEECSS----------GGGTTSBCC----SSC-------CHHHHHHCCCE----EEEE------EETTE
T ss_pred CEEEEEcCCCcEEEecC----------hhhCCCccc----CCC-------cHHHHhCCCeE----EEEE------Eccce
Confidence 47888999998876532 234677543 111 12334555531 1111 12222
Q ss_pred EEEEEEEEeecCCCCEEEEEEEEEecch
Q 001353 709 YILVNACTSRDYKNNVKGVCFVGQDITH 736 (1093)
Q Consensus 709 ~v~v~~~pi~d~~g~v~gv~~v~~DITe 736 (1093)
.......|+++.+|+++|++.+..++..
T Consensus 100 ~~~~~~~PV~~~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 100 SSLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred eeEEEEEeEECCCCCEEEEEEEEEEhHH
Confidence 3334445999989999999999888764
No 229
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=52.97 E-value=70 Score=33.72 Aligned_cols=132 Identities=13% Similarity=0.095 Sum_probs=76.4
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhc
Q 001353 217 VSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQ 296 (1093)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~ 296 (1093)
.++..+|-. +.++++++++..+++++.++.|.|-+.=|++.+... +..-|...-......++..
T Consensus 106 ~~l~l~LL~--a~sl~~l~~~L~~~l~~~F~l~~v~L~L~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~ 169 (252)
T 3e98_A 106 RRLVLDLLD--ATSLEDVVSTVEDSLRHEFQVPYVSLILFSDSSVSV--------------GRSVSSAEAHQAIGGLLSG 169 (252)
T ss_dssp HHHHHHHHH--CCSHHHHHHHHHHHHHHTSCCSEEEEEEECSSCCCS--------------SEEECHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHCCCCeEEEEEecCccccc--------------hhhccchhHHHHHHHHhCC
Confidence 344555556 569999999999999999999999999998765210 0000000000111111111
Q ss_pred CCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHH----HhcCceeEEEEEEEEcCCCCcceeEEEEeecC
Q 001353 297 NRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYM----TNMGSIASLVMAVIINSKDSMKLWGLVVCHHT 372 (1093)
Q Consensus 297 ~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl----~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~ 372 (1093)
++. . +-.....-...| +.-.|+|...+|+- .+ +++|+|+--..
T Consensus 170 ~~p----------------------y------~G~l~~~e~~~lFg~~~a~~v~S~AllpL~-~~----~~~GlLalGS~ 216 (252)
T 3e98_A 170 GKT----------------------V------CGVLRPHELAFLFGESDRDEIGSAAVVSLS-FQ----GLHGVLAIGSP 216 (252)
T ss_dssp CCC----------------------S------TTCCCHHHHHHHCCCTTGGGCCEEEEEEEE-SS----SEEEEEEEEES
T ss_pred CCc----------------------e------ECCCCchHHHHhcCCCccccccceEEEEcC-CC----CceEEEEEcCC
Confidence 100 0 000011111111 11245777788883 33 69999998888
Q ss_pred CCCCC-CchHHHHHHHHHHHHHHHHH
Q 001353 373 SPRYI-PFPLRYACEFLVQAFSLQLY 397 (1093)
Q Consensus 373 ~p~~~-~~~~r~~~~~l~~~~~~~l~ 397 (1093)
.|.++ |----.++++||.+++..|.
T Consensus 217 D~~rF~p~mgT~fL~~La~vvs~~L~ 242 (252)
T 3e98_A 217 DPQHYKSSLGTLFLGYVAEVLARVLP 242 (252)
T ss_dssp STTGGGSTTTTHHHHHHHHHHHHHGG
T ss_pred ChhhcCCCCcHHHHHHHHHHHHHHHH
Confidence 86555 44667888999998887664
No 230
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=52.54 E-value=2.3e+02 Score=29.76 Aligned_cols=132 Identities=11% Similarity=0.040 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceE-EEEecCCCCCCccCCccCCCCchHHHH
Q 001353 213 QKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEV-VSEIRRSDLEPYLGIHFPANDIPQAAR 291 (1093)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~v-vaE~~~~~~~~~lg~~~p~~dip~~~r 291 (1093)
+..+.+.+..++. +.+.+++. .++..+.+.+|||++..+-..+...+.. -. ..++ .+..|....
T Consensus 21 ~~~l~~~l~~l~~--a~~~~~l~-~~l~~~~~~lGf~~~~y~~~~~~~~~~~~~~-------~~~i-----~~~yp~~W~ 85 (265)
T 3qp6_A 21 QWTLLEWIHMAGH--IETEGELK-AFLDNILSQAPSDRIILVLGRLNNQNQIQRM-------EKVL-----NVSYPSDWL 85 (265)
T ss_dssp HHHHHHHHHHHTT--CCSHHHHH-HHHHHHTCSSTTCEEEEEEEEECTTSCEEEE-------EEEE-----ESSCCHHHH
T ss_pred HHHHHHHHHHHhc--CCCHHHHH-HHHHHHHHHcCCCEEEEEeecCCCCcccccc-------ccee-----ecCCcHHHH
Confidence 3456788899998 55888888 6677888899999998765543332211 00 0111 244578888
Q ss_pred HhHhcCCeEEEecCCCCCccccc-ccccCCCccccCccccCCChh---HHHHHHhcCceeEEEEEE-EEcCCCCcceeEE
Q 001353 292 FLFKQNRVRMICDCHAIPVMVIQ-SKELKQPLCLVNSTLRSPHGC---HLQYMTNMGSIASLVMAV-IINSKDSMKLWGL 366 (1093)
Q Consensus 292 ~l~~~~~~r~i~d~~~~~~~l~~-~~~~~~~ldl~~s~lRs~s~~---h~~yl~n~~v~asl~~~i-~~~~~~~~~LWGl 366 (1093)
+.|..+....|. |++. .- ...|+.-+....+..++. -.+..+.+|+..-+++|+ ...+ ...|+
T Consensus 86 ~~Y~~~~y~~~D-------Pvv~~~~-~~~p~~W~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tipi~~~~~----g~~g~ 153 (265)
T 3qp6_A 86 NQYSQENFAQHD-------PIMRIHL-GQGPVIWEERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDRN----NVGSI 153 (265)
T ss_dssp HHHHHTTGGGTC-------GGGGCCT-TSSCEEHHHHHTTCCSHHHHHHHHHHHHTTCSSEEEEEEECSSS----SEEEE
T ss_pred HHHHHCcCcccC-------hHHHHhc-CCCCEEECCcccccCChhHHHHHHHHHHcCCccceEEEEEEcCC----CCEEE
Confidence 888876553221 1111 11 223333332211222333 355668999999999999 6444 68888
Q ss_pred EEeec
Q 001353 367 VVCHH 371 (1093)
Q Consensus 367 ~~~h~ 371 (1093)
+....
T Consensus 154 ls~~~ 158 (265)
T 3qp6_A 154 LSIGG 158 (265)
T ss_dssp EEEES
T ss_pred EEeec
Confidence 88665
No 231
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=48.04 E-value=7.6 Score=45.53 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeec
Q 001353 217 VSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFH 257 (1093)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~ 257 (1093)
.+.+.++.+ +.++.+++.+.+.++++++++|||.||.++
T Consensus 323 ~~l~~~l~~--~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 323 LALARRARD--ADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHHH--HCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHHhh--cCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 345566666 568999999999999999999999999986
No 232
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=42.71 E-value=24 Score=33.48 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=44.7
Q ss_pred ccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccCCcEE
Q 001353 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708 (1093)
Q Consensus 629 ~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG~~~ 708 (1093)
+.|+++|.+|..++... .+.+|+++. . +. +..+++|+.. +... .|...
T Consensus 57 ~~i~v~d~~G~~~~~~~----------~~~iG~~~~-~---~~--------~~~al~G~~~----~~~~------~~~~g 104 (142)
T 3by8_A 57 LFIVVTDMQSLRYSHPE----------AQRIGQPFK-G---DD--------ILKALNGEEN----VAIN------RGFLA 104 (142)
T ss_dssp SEEEEEETTCBBSCCSS----------GGGTTSBCC-C---GG--------GTGGGGTCCE----EEEE------CSSSS
T ss_pred cEEEEECCCCcEEECCC----------hHHCCCcCC-C---CC--------HHHHhCCCeE----EEEe------cCccE
Confidence 47888999997765432 345677654 1 11 1223455421 1111 12211
Q ss_pred EEEEEEEEeecCCCCEEEEEEEEEecchhH
Q 001353 709 YILVNACTSRDYKNNVKGVCFVGQDITHEK 738 (1093)
Q Consensus 709 ~v~v~~~pi~d~~g~v~gv~~v~~DITerK 738 (1093)
.......|++|.+|+++|++.+..++....
T Consensus 105 ~~~~~~~PV~~~~g~viGvv~vg~~~~~~~ 134 (142)
T 3by8_A 105 QALRVFTPIYDENHKQIGVVAIGLELSRVT 134 (142)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEEEHHHHH
T ss_pred EEEEEEEeEEcCCCCEEEEEEEeEEHHHHH
Confidence 223334499988899999999998876543
No 233
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=41.00 E-value=14 Score=40.77 Aligned_cols=47 Identities=23% Similarity=0.373 Sum_probs=39.0
Q ss_pred EEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHH
Q 001353 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678 (1093)
Q Consensus 631 I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~ 678 (1093)
++++|.+++|+.++..+.+++|.++++++|+++. +++.++....+..
T Consensus 32 Ll~~~~~~~I~~~S~N~~~~lg~~~~~~lG~~l~-~ll~~~~~~~l~~ 78 (327)
T 4e04_A 32 LLALAADMTIVAGSDNLPELTGLAIGALIGRSAA-DVFDSETHNRLTI 78 (327)
T ss_dssp EEEECTTCBEEEEETTHHHHHSCCHHHHTTCBHH-HHBCHHHHHHHHH
T ss_pred EEEEcCCCeEEEEcccHHHHhCCChHhhcCCCHH-HHcCHHHHHHHHH
Confidence 4567888999999999999999999999999998 7877655554443
No 234
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=36.90 E-value=1.3e+02 Score=27.61 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcc--hh-cc-ccCCCccceeeEEEccCCcEEEEEEEEe
Q 001353 747 LQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH--EV-IG-ITGQGTENFPFGFFNRQGQFVEVALTAS 822 (1093)
Q Consensus 747 se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~e--El-iG-~~~~~~~~~e~~~~~kdG~~~~v~~~~~ 822 (1093)
++..++.+-+.... .-|++.|.+|..+..... ...|-... .. .. +.+.. -+.. ..|...+......
T Consensus 37 l~~~~~~~~~~~~~--~~i~v~d~~G~~~a~~~~--~~iG~~~~~~~~~~~al~G~~----~~~~--~~g~~g~~~~~~~ 106 (131)
T 1p0z_A 37 IKALIDPMRSFSDA--TYITVGDASGQRLYHVNP--DEIGKSMEGGDSDEALINAKS----YVSV--RKGSLGSSLRGKS 106 (131)
T ss_dssp HHHHHHHHHHHSCC--SEEEEEETTSBEEECSSG--GGTTSBCCSSCCHHHHHHCCC----EEEE--EEETTEEEEEEEE
T ss_pred HHHHHHHHHHhcCC--CEEEEEcCCCcEEEecCh--hhCCCcccCCCcHHHHhCCCe----EEEE--EEccceeeEEEEE
Confidence 34444444444433 269999999987665431 12442211 00 00 22221 1111 1333334455556
Q ss_pred EeecCCCcEEEEEEEEeeccc
Q 001353 823 RRTDAEGKVIGCFCFMQILVP 843 (1093)
Q Consensus 823 ~i~d~~G~v~g~i~~~~DITe 843 (1093)
|+++.+|+++|++.+-.++..
T Consensus 107 PV~~~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 107 PIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEECTTCCEEEEEEEEEEGGG
T ss_pred eEECCCCCEEEEEEEEEEhHH
Confidence 999989999999998877653
No 235
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=36.59 E-value=77 Score=37.81 Aligned_cols=94 Identities=12% Similarity=0.133 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCCC-CCCeEEEEEEeCCccccCCCceeEEEEEEecCCC---CCChhhHhhhccCCCC----------
Q 001353 980 LVLSDFLHCVVRHAPS-PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGE---GIPSHLIEDMYNGRNQ---------- 1045 (1093)
Q Consensus 980 qVl~nLl~NAik~t~~-~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~---GIp~e~~~~IFe~F~~---------- 1045 (1093)
.++.++|.||+=|..- .++.|.|.+..-.+ . +.|...|. |++.+.+.. ..+ .+
T Consensus 299 ~aiREal~NAl~HrDY~~~~~i~i~i~~~~d---------r--iei~npG~l~~~~t~e~~~~-~~s-~RNp~la~~~~~ 365 (583)
T 3lmm_A 299 LAVREAMLNAMIHRDWNRSEPIDVRWIELDS---------T--LIVRSPGGFPAAITSENVLS-NRA-ARYPALADLYRA 365 (583)
T ss_dssp HHHHHHHHHHHHHSCSSSSSCEEEEEETTTT---------E--EEEEEESCCCTTCCTTSSTT-CCC-CSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCCCEEEEEEecCC---------E--EEEEcCCCCCCCCCHHHhcC-CCC-CCCHHHHHHHHH
Confidence 7899999999976321 13678887764455 4 45557775 565554332 111 22
Q ss_pred --CCCCccchHHHHHHHHHHcCCE-EEEEeeCCeeEEEEEEeecC
Q 001353 1046 --WTTPEGLGLKLSRKLLIMMNGR-VRYVRENSKCYFVIDLELKT 1087 (1093)
Q Consensus 1046 --~~~GtGLGL~ivr~ive~hgG~-I~v~S~~ggt~F~v~LPlp~ 1087 (1093)
-..+.|-|+.-+.+..+..|.. -.+....+ ..|+++||...
T Consensus 366 ~~~~e~~GsGi~~i~~~~~~~g~~~P~~~~~~~-~~~~v~l~~~~ 409 (583)
T 3lmm_A 366 LGLVDKQGVGVDRMYQAMIALGHRPPTIEEIAG-PFVETTLVGGR 409 (583)
T ss_dssp TTCSCSSHHHHHHHHHHHHHTTCCCCEEEEETT-TEEEEEEECCS
T ss_pred hCccccCCcHHHHHHHHHHHcCCCCCeEEEcCC-CEEEEEEeCCC
Confidence 3457888888888888887763 34544433 56788888654
No 236
>3qp1_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 1.55A {Chromobacterium violaceum} PDB: 3qp2_A* 3qp4_A* 3qp8_A*
Probab=35.54 E-value=3.2e+02 Score=26.61 Aligned_cols=147 Identities=10% Similarity=-0.001 Sum_probs=85.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCc--eEEEEecCCCCCCccCCccCCCCchHHHHH
Q 001353 215 LAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHG--EVVSEIRRSDLEPYLGIHFPANDIPQAARF 292 (1093)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G--~vvaE~~~~~~~~~lg~~~p~~dip~~~r~ 292 (1093)
.+.+.+.+++. +.+.+++.+. +..+.+.+|||+++...-.....| +.+. .++ -+..|+...+
T Consensus 18 ~l~~~~~~l~~--a~s~~~l~~~-l~~~~~~~Gf~~~~y~~~~~~~~~~~~~~~--------~~~-----~~nyP~~W~~ 81 (182)
T 3qp1_A 18 TLLEWIHMAGH--IETENELKAF-LDQVLSQAPSERLLLALGRLNNQNQIQRLE--------RVL-----NVSYPSDWLD 81 (182)
T ss_dssp HHHHHHHHHTT--CCSHHHHHHH-HHHHHTTSSCSEEEEEEEEECTTSCEEEEE--------EEE-----ESSSCHHHHH
T ss_pred HHHHHHHHHHh--cCCHHHHHHH-HHHHHHhcCCCeEEEEeecCCCcccccchh--------hhh-----hcCCCHHHHH
Confidence 34568888888 4488877766 567788999999987543322212 1110 011 1234788889
Q ss_pred hHhcCCeEEEecCCCCCccccc-ccccCCCccccCccccCCChhH---HHHHHhcCceeEEEEEEEEc-CCCCcceeEEE
Q 001353 293 LFKQNRVRMICDCHAIPVMVIQ-SKELKQPLCLVNSTLRSPHGCH---LQYMTNMGSIASLVMAVIIN-SKDSMKLWGLV 367 (1093)
Q Consensus 293 l~~~~~~r~i~d~~~~~~~l~~-~~~~~~~ldl~~s~lRs~s~~h---~~yl~n~~v~asl~~~i~~~-~~~~~~LWGl~ 367 (1093)
.|..+..-.|. |++. .. ...|+.=+....+..++-. .+..+.+|++.-+++||.-. + ...|++
T Consensus 82 ~Y~~~~y~~~D-------Pvv~~~~-~~~p~~W~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tvp~~~~~~----g~~g~l 149 (182)
T 3qp1_A 82 QYMKENYAQHD-------PILRIHL-GQGPVMWEERFNRAKGAEEKRFIAEATQNGMGSGITFSAASERN----NIGSIL 149 (182)
T ss_dssp HHHHTTGGGTC-------GGGGSCT-TSCCEEHHHHHHTCCSHHHHHHHHHHHHTTCSSEEEEEEEETTT----TEEEEE
T ss_pred HHHHCCCcccC-------cchHhhc-CCCCEecCchhhcccChHHHHHHHHHHHcCCCceEEEEeecCCC----CcEEEE
Confidence 99888764331 1111 11 2233333322223334433 45567899999999999865 3 789988
Q ss_pred EeecCCCCCCCchHHHHHHHHHH
Q 001353 368 VCHHTSPRYIPFPLRYACEFLVQ 390 (1093)
Q Consensus 368 ~~h~~~p~~~~~~~r~~~~~l~~ 390 (1093)
+.-...+ ..+..++..++.++.
T Consensus 150 s~a~~~~-~~~~~~~~~l~~la~ 171 (182)
T 3qp1_A 150 SIAGREP-GRNAALVAMLNCLTP 171 (182)
T ss_dssp EEESSTG-GGCHHHHHHHHHHHH
T ss_pred EEecCCc-cCCHHHHHHHHHHHH
Confidence 8654432 344444444444443
No 237
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=35.01 E-value=3.8e+02 Score=27.24 Aligned_cols=119 Identities=8% Similarity=0.015 Sum_probs=64.2
Q ss_pred HHhhcCCCCC-HHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCe
Q 001353 221 SRLQALPGGD-IGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299 (1093)
Q Consensus 221 ~~~~~~~~~~-~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~ 299 (1093)
.++.+ +.+ .+++.+.. ..+.+.+|||++..+.+.. .. .++ .+..|....+.|..+..
T Consensus 11 ~~l~~--a~~~~~~l~~~l-~~~~~~~gf~~~~y~~~~~---~~-----------~~~-----~~~~p~~w~~~Y~~~~y 68 (236)
T 2q0o_A 11 IDMLE--AAQDGHMIKIAL-RSFAHSCGYDRFAYLQKDG---TQ-----------VRT-----FHSYPGPWESIYLGSDY 68 (236)
T ss_dssp HHHHH--HCCSHHHHHHHH-HHHHHHHTCCEEEEEEEET---TE-----------EEE-----EECSCHHHHHHHHHTTG
T ss_pred HHHHH--ccCcHHHHHHHH-HHHHHHhCCCeEEEEecCC---Cc-----------eEE-----EeCCCHHHHHHHHHCCC
Confidence 55555 336 77777765 5566669999998775210 01 111 22346677777776654
Q ss_pred EEEecCCCCCccccc-ccccCCCccccCccccC-CC---hhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecC
Q 001353 300 RMICDCHAIPVMVIQ-SKELKQPLCLVNSTLRS-PH---GCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHT 372 (1093)
Q Consensus 300 r~i~d~~~~~~~l~~-~~~~~~~ldl~~s~lRs-~s---~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~ 372 (1093)
..+ . |++. .-....|..-+....+. .+ +...++.+.+|+..-+++|+.-.+ ..+|++.....
T Consensus 69 ~~~-----D--Pv~~~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~~----~~~g~ls~~~~ 135 (236)
T 2q0o_A 69 FNI-----D--PVLAEAKRRRDVFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGSY----GSAMMLTFASP 135 (236)
T ss_dssp GGT-----C--HHHHHHHHCCSCEEEESTTSCCSSCCHHHHHHHHHHHTTCCEEEEEEEECGG----GCEEEEEEEES
T ss_pred ccc-----C--HHHHHHhCCCCCEEecCcccccccCHHHHHHHHHHHHcCCCceEEEEEEcCC----CCeEEEEEecC
Confidence 221 1 1111 00111222222222111 11 233567789999999999998655 67888765433
No 238
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=34.89 E-value=46 Score=33.52 Aligned_cols=89 Identities=9% Similarity=-0.034 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcc--hhcc--ccCCCccceeeEEE-ccCCcEEEEEEEEeE
Q 001353 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRH--EVIG--ITGQGTENFPFGFF-NRQGQFVEVALTASR 823 (1093)
Q Consensus 749 ~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~e--EliG--~~~~~~~~~e~~~~-~kdG~~~~v~~~~~~ 823 (1093)
..++.+....+. +..+++.|.+|+++..+... ..|+... +... +..+...-.+ .+. ...|+ ++.....|
T Consensus 58 ~~L~~~~~~~~~-~~~i~i~d~~G~~~~~~~~~--~~~~~~~~r~~f~~a~~~~~~~is~-~~~~~~~g~--~~i~ia~p 131 (217)
T 4dah_A 58 SILEKTFDSEPR-FSGLYFLNAKGDVTASTTEL--KTKVNLADRSFFIKAKETKKTVISD-SYSSRITGQ--PIFTICVP 131 (217)
T ss_dssp HHHHHHHTTCTT-EEEEEEEETTCBEEEESSCC--SSCCBCTTSHHHHHHHHHCSCEECC-CEECTTTCS--EEEEEEEE
T ss_pred HHHHHHHhcCCc-ccEEEEECCCCcEEEecCCC--CCCCCcchhHHHHHHHhcCCcEEec-eEEcCCCCC--EEEEEEEE
Confidence 334455554443 34789999999998765311 1111111 0000 1111111111 222 23555 56667789
Q ss_pred eecCCCcEEEEEEEEeeccc
Q 001353 824 RTDAEGKVIGCFCFMQILVP 843 (1093)
Q Consensus 824 i~d~~G~v~g~i~~~~DITe 843 (1093)
+++.+|++.|+++...+...
T Consensus 132 i~~~~g~~~Gvl~~~i~l~~ 151 (217)
T 4dah_A 132 VLDSKRNVTDYLVAAIQIDY 151 (217)
T ss_dssp EECTTSCEEEEEEEEEEHHH
T ss_pred EECCCCCEEEEEEEEEcHHH
Confidence 99999999999998877653
No 239
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=31.15 E-value=2.8e+02 Score=24.64 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=32.4
Q ss_pred HHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCcc
Q 001353 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPAS 656 (1093)
Q Consensus 620 l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~e 656 (1093)
...+..++|.++.+-+.+..|+|.|.++.++|-....
T Consensus 22 iq~iY~nSPVpVCVRNq~RkilYaN~aF~elF~Ked~ 58 (127)
T 4ew7_A 22 IQDIYKNSPVPVCVRNQSRKIIYANGAFIELFSKEDQ 58 (127)
T ss_dssp HHHHHTTCSSCEEEECTTSCEEEECHHHHHHTTSCCC
T ss_pred HHhhhcCCCccEEEecccceEEEecchHHHHhhcccC
Confidence 4678899999999999999999999999999765433
No 240
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A*
Probab=29.95 E-value=4.5e+02 Score=28.20 Aligned_cols=124 Identities=11% Similarity=0.051 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHhhhCCCeEEEEeecCCCC--ceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCeEEEecCCCC
Q 001353 231 IGLLCDTVVEDVQKLTGYDRVMLYNFHDDDH--GEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAI 308 (1093)
Q Consensus 231 ~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~--G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~ 308 (1093)
+..+.+...+-+.+..++.+--||+.+.+.+ -+.+| -+|--+|-+-=-+-.|.....+..-.|.+...+
T Consensus 24 l~~~a~~lL~llaq~~~l~~Aaly~~~~~~~~~~~p~A---------~iG~~~~l~~~DpLVr~alet~~l~~v~~~~~~ 94 (298)
T 4eu0_A 24 LDALAETVLALLAQYGSLRIAGLYRVRYDRTPEPQPLA---------TLGEMPALDADDLLVRTCLERGELVSVRQELLE 94 (298)
T ss_dssp HHHTHHHHHHHHHHHHTCSEEEEEEBCTTSCBCSSCSE---------EESSCCCCCSCCHHHHHHHHHTSCEECCC----
T ss_pred ChHHHHHHHHHHHHhcCeeEEEEEEEECCcccCCceee---------ecCCCCCCCCCCHHHHHHHHhCCceeechhhhh
Confidence 5666888888889999999999999876542 11221 333322211001223333344443333322111
Q ss_pred CcccccccccCCCccccCccccCCChhHHHHHHhc-CceeEEEEEEE-EcCCCCcceeEEEEeecCCCCCCCchHHHHHH
Q 001353 309 PVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNM-GSIASLVMAVI-INSKDSMKLWGLVVCHHTSPRYIPFPLRYACE 386 (1093)
Q Consensus 309 ~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~-~v~asl~~~i~-~~~~~~~~LWGl~~~h~~~p~~~~~~~r~~~~ 386 (1093)
. .+.+ +.+.=+++|++ .+| ++||+|+.+..-+..+..+.-....
T Consensus 95 ~------------------------------~~~~~~sryL~viPLld~~g----~i~Gvl~V~~mpF~a~~~~~LqlL~ 140 (298)
T 4eu0_A 95 R------------------------------GEQRAHSAAAVCVPLVDTDG----RILALLAVEQMPFFVFNERTFSLLA 140 (298)
T ss_dssp ---------------------------------------CCEEEEEECTTS----CEEEEEEEEECCGGGCSHHHHHHHH
T ss_pred c------------------------------cccccccceEEEEEeecCCC----cEEEEEEEecCCccccCHhHHHHHH
Confidence 0 0011 34666789997 566 9999999999988888888888888
Q ss_pred HHHHHHHHHHH
Q 001353 387 FLVQAFSLQLY 397 (1093)
Q Consensus 387 ~l~~~~~~~l~ 397 (1093)
.|+...+..+.
T Consensus 141 VL~g~~ad~i~ 151 (298)
T 4eu0_A 141 ILAGHIADLLQ 151 (298)
T ss_dssp HHHHHHHHHHG
T ss_pred HHHHHHHHHHH
Confidence 88888887774
No 241
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=29.71 E-value=3.3e+02 Score=27.60 Aligned_cols=117 Identities=8% Similarity=0.109 Sum_probs=64.8
Q ss_pred HHhhcCCCCC-HHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCe
Q 001353 221 SRLQALPGGD-IGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRV 299 (1093)
Q Consensus 221 ~~~~~~~~~~-~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~ 299 (1093)
.++.+ +.+ .+++.+. +..+.+.+|||++..+.+.. + +.++ .+..|....+.|..+..
T Consensus 9 ~~l~~--a~~~~~~l~~~-l~~~~~~~gf~~~~y~~~~~------------~--~~~~-----~~~~p~~w~~~Y~~~~y 66 (234)
T 1l3l_A 9 TDLAA--IEGDECILKTG-LADIADHFGFTGYAYLHIQH------------R--HITA-----VTNYHRQWQSTYFDKKF 66 (234)
T ss_dssp HHHTT--CCSCHHHHHHH-HHHHHHHTTCSEEEEEEEET------------T--EEEE-----EECSCHHHHHHHHHTTG
T ss_pred HHHHH--ccCcHHHHHHH-HHHHHHHcCCCeEEEEecCC------------C--CeEE-----EcCCCHHHHHHHHHCCC
Confidence 66666 346 7777654 55667899999999883211 0 1122 23446777777876653
Q ss_pred EEEecCCCCCcccccc-cccCCCccccCccccC-C---ChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEee
Q 001353 300 RMICDCHAIPVMVIQS-KELKQPLCLVNSTLRS-P---HGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCH 370 (1093)
Q Consensus 300 r~i~d~~~~~~~l~~~-~~~~~~ldl~~s~lRs-~---s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h 370 (1093)
..+ . |++.. -....|..-+...... . .+...++.+.+|+..-+++|+.-.+ ..+|++..-
T Consensus 67 ~~~-----D--Pv~~~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~~----~~~g~ls~~ 131 (234)
T 1l3l_A 67 EAL-----D--PVVKRARSRKHIFTWSGEHERPTLSKDERAFYDHASDFGIRSGITIPIKTAN----GFMSMFTMA 131 (234)
T ss_dssp GGT-----C--HHHHHHHHCCSCEEEEHHHHTTTCCHHHHHHHHHHHTTTCSEEEEEEEECGG----GCEEEEEEE
T ss_pred ccc-----C--cHHHHhhCCCCCeeeCccccccccchHHHHHHHHHHHcCCCccEEEEEecCC----CCEEEEEEe
Confidence 221 1 11110 0111222222222111 1 1233455689999999999998655 788887643
No 242
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=28.83 E-value=25 Score=38.92 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=37.5
Q ss_pred EEEECC-CCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHH
Q 001353 631 IFGVDS-SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678 (1093)
Q Consensus 631 I~~~D~-dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~ 678 (1093)
++++|. +++|+.++..+.+++|.++++++|+++. +++.+ ....+..
T Consensus 55 LL~l~~~~~~I~~~S~N~~~~lg~~~~~llG~~l~-~ll~~-~~~~l~~ 101 (343)
T 3s7o_A 55 LLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLA-ALLPE-QWPALQA 101 (343)
T ss_dssp EEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHH-HHSTT-THHHHHH
T ss_pred EEEEECCCCEEEEEcccHHHHhCcChHHHcCCCHH-HHHhH-HHHHHHH
Confidence 345665 7999999999999999999999999998 78776 5554433
No 243
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=27.96 E-value=3.2e+02 Score=24.28 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=27.8
Q ss_pred HHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCc
Q 001353 752 EAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMR 789 (1093)
Q Consensus 752 r~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~ 789 (1093)
+.+..+.|. ++.+.+...+|+|.|.+|.++|-...
T Consensus 23 q~iY~nSPV---pVCVRNq~RkilYaN~aF~elF~Ked 57 (127)
T 4ew7_A 23 QDIYKNSPV---PVCVRNQSRKIIYANGAFIELFSKED 57 (127)
T ss_dssp HHHHTTCSS---CEEEECTTSCEEEECHHHHHHTTSCC
T ss_pred HhhhcCCCc---cEEEecccceEEEecchHHHHhhccc
Confidence 445555554 89999999999999999999974433
No 244
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=26.69 E-value=2.2e+02 Score=30.24 Aligned_cols=136 Identities=10% Similarity=-0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCcc--EEEECCCC-cEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCC
Q 001353 611 DELSSVACEMVRLIETATAP--IFGVDSSG-TINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687 (1093)
Q Consensus 611 ~eL~~~~~~l~~lie~~~~~--I~~~D~dG-~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~ 687 (1093)
......++.|..++++.+.. |.++|.+| .++.+|......+-.+..++..+... ..++.+++.+
T Consensus 60 ~~~~~l~~~~~~~~~~~~~~~~i~lid~~G~~i~~~~~~~~~~~~~p~~~l~n~~~R-------------~yf~~a~~~~ 126 (295)
T 3lid_A 60 ANLTILENMWSSVARNQKLYKQIRFLDTSGTEKVRIKYDFKTSIAGPSLILRDKSAR-------------EYFKYAQSLD 126 (295)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEEETTSBEEEEEEEETTTTEEEECSCCCBCTTS-------------HHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhcCccccEEEEECCCCCEEEEEEccCCceeEcCccccccchhh-------------HHHHHHhcCC
Q ss_pred CCceEEEEEEEeeeccCC----cEEEEEEEEEEeecCCCCEEEEEEEEEecchhHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001353 688 EDKNVELKLRKFELQKQH----SVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIP 763 (1093)
Q Consensus 688 ~~~~~e~~l~~~~~~kdG----~~~~v~v~~~pi~d~~g~v~gv~~v~~DITerK~aEe~L~~se~~lr~i~~~~~~li~ 763 (1093)
....+-..+... ..+| ...++..-+.|+. .+|++.|++++-.|+.. +...+.....--.
T Consensus 127 ~~~~~~s~~~~~--~~~g~~~~~~~p~i~~a~pV~-~~g~~~GVlv~~i~l~~--------------l~~~~~~~~~~~~ 189 (295)
T 3lid_A 127 NEQISAWGIELE--RDKGELVYPLSPSLRILMPIS-VNDVRQGYLVLNVDIEY--------------LSSLLNYSPVRDF 189 (295)
T ss_dssp TTCCEECCCEEC--EETTEECSSCCEEEEEEEEEE-ETTEEEEEEEEEEEHHH--------------HHHHHSEETTTTE
T ss_pred CCcEEEeCceec--ccCCcccCCCCCEEEEEEEEc-cCCeEEEEEEEEecHHH--------------HHHHHhhcccCCC
Q ss_pred ceEEecCCCcEee
Q 001353 764 PIFASDENACCSE 776 (1093)
Q Consensus 764 ~I~~~D~~g~i~~ 776 (1093)
.++++|.+|.++.
T Consensus 190 ~~~l~d~~G~~l~ 202 (295)
T 3lid_A 190 HIELVKHKGFYIA 202 (295)
T ss_dssp ECEEEETTSBEEE
T ss_pred cEEEEcCCCCEEe
No 245
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=26.24 E-value=63 Score=30.76 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHhh---hCCCeEEEEeecC
Q 001353 230 DIGLLCDTVVEDVQKL---TGYDRVMLYNFHD 258 (1093)
Q Consensus 230 ~~~~~~~~~~~~vr~~---~~~dRv~iy~f~~ 258 (1093)
+.+.+.+.+|++|..+ +|++|||+|-|..
T Consensus 52 ~~~~vv~~av~eI~~~a~kv~~~~ivlYPyAH 83 (143)
T 2hl0_A 52 NPEEVSLKAIEEISKVAEQVKAENVFVYPFAH 83 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCEEEEEECGG
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 3466777777777766 5899999999975
No 246
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=22.77 E-value=1.8e+02 Score=27.19 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=40.5
Q ss_pred ceEEecCCCcEeechhhhHHHhCCCcc--hhcc-ccCCCccceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEee
Q 001353 764 PIFASDENACCSEWNAAMEKVTGWMRH--EVIG-ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQI 840 (1093)
Q Consensus 764 ~I~~~D~~g~i~~~N~a~~~l~G~~~e--EliG-~~~~~~~~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~D 840 (1093)
-|++.|.+|..+..... ...|-+.. .+.. +.+... +.. ..|..........|+++.+|+++|++++-.+
T Consensus 58 ~i~v~d~~G~~~~~~~~--~~iG~~~~~~~~~~al~G~~~----~~~--~~~~~g~~~~~~~PV~~~~g~viGvv~vg~~ 129 (142)
T 3by8_A 58 FIVVTDMQSLRYSHPEA--QRIGQPFKGDDILKALNGEEN----VAI--NRGFLAQALRVFTPIYDENHKQIGVVAIGLE 129 (142)
T ss_dssp EEEEEETTCBBSCCSSG--GGTTSBCCCGGGTGGGGTCCE----EEE--ECSSSSCEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEECCCCcEEECCCh--HHCCCcCCCCCHHHHhCCCeE----EEE--ecCccEEEEEEEEeEEcCCCCEEEEEEEeEE
Confidence 68999999977665431 13443211 1111 222211 111 2333333444455999889999999999887
Q ss_pred ccc
Q 001353 841 LVP 843 (1093)
Q Consensus 841 ITe 843 (1093)
...
T Consensus 130 ~~~ 132 (142)
T 3by8_A 130 LSR 132 (142)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 247
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=20.46 E-value=1.3e+02 Score=32.48 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcC
Q 001353 614 SSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTG 652 (1093)
Q Consensus 614 ~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG 652 (1093)
......++.+++..+.+.+++|..+.|+.||+.+..+|+
T Consensus 95 ~~v~p~l~~lLd~l~~PA~V~d~~~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 95 EESLQYLIDMIRNMNVPAFVTDQYVNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEETTCBEEEEEHHHHHHHT
T ss_pred cccCHHHHHHHHhcCCCeEEECCCCCHhhcCHHHHHHhC
Confidence 345566888999999999999999999999999999995
Done!