Query 001353
Match_columns 1093
No_of_seqs 637 out of 3939
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 23:47:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001353.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001353hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o9ca1 d.110.2.1 (A:135-321) 100.0 4.7E-50 3.4E-54 413.9 21.9 179 214-398 4-184 (187)
2 d2veaa1 d.110.2.1 (A:131-326) 100.0 7.3E-47 5.3E-51 394.1 20.8 184 210-399 4-189 (196)
3 d2oola1 d.110.2.1 (A:140-333) 100.0 1.9E-45 1.4E-49 383.4 23.9 181 211-397 5-187 (194)
4 d3c2wa1 d.110.2.1 (A:118-309) 100.0 6.2E-44 4.5E-48 371.1 21.7 175 214-394 8-184 (192)
5 d2k2na1 d.110.2.1 (A:31-200) S 100.0 1.4E-36 9.9E-41 310.2 16.0 164 231-398 1-167 (170)
6 d2veaa2 d.110.2.4 (A:327-514) 100.0 1.9E-34 1.4E-38 293.7 13.6 166 418-585 13-182 (188)
7 d3c2wa2 d.110.2.4 (A:310-494) 100.0 1E-32 7.3E-37 280.3 17.0 152 428-583 28-182 (185)
8 d2c2aa2 d.122.1.3 (A:321-481) 100.0 7.2E-29 5.3E-33 249.6 20.9 148 929-1087 2-160 (161)
9 d1ysra1 d.122.1.3 (A:299-446) 100.0 4.7E-28 3.4E-32 239.8 17.9 142 930-1087 2-148 (148)
10 d1id0a_ d.122.1.3 (A:) Histidi 99.9 5.3E-27 3.9E-31 231.5 19.8 139 932-1085 2-144 (146)
11 d1bxda_ d.122.1.3 (A:) Histidi 99.9 3E-27 2.2E-31 237.3 15.5 146 928-1091 4-155 (161)
12 d1r62a_ d.122.1.3 (A:) Nitroge 99.9 1.5E-26 1.1E-30 231.4 13.8 150 933-1086 3-155 (156)
13 d2veaa3 d.110.3.9 (A:4-130) Ph 99.9 2.8E-25 2E-29 212.0 7.9 120 75-201 4-126 (127)
14 d1jm6a2 d.122.1.4 (A:1177-1366 99.9 6.9E-24 5E-28 218.6 18.1 146 932-1087 9-180 (190)
15 d2oola2 d.110.3.9 (A:26-139) S 99.9 6.5E-25 4.7E-29 207.4 8.2 112 81-199 1-113 (114)
16 d1gkza2 d.122.1.4 (A:186-378) 99.9 1.4E-23 1E-27 217.5 18.0 144 932-1087 8-189 (193)
17 d2o9ca2 d.110.3.9 (A:4-130) Ba 99.9 1.6E-23 1.2E-27 199.8 6.3 111 77-197 15-126 (127)
18 d3c2wa3 d.110.3.9 (A:5-117) Ba 99.9 3.3E-23 2.4E-27 193.9 7.6 107 79-199 4-111 (113)
19 d1ixma_ d.123.1.1 (A:) Sporula 99.7 5.6E-17 4.1E-21 163.6 12.0 148 861-1045 8-159 (179)
20 d1ew0a_ d.110.3.2 (A:) Histidi 99.5 4.3E-15 3.2E-19 142.0 9.4 123 606-735 4-130 (130)
21 d1n9la_ d.110.3.6 (A:) Putativ 99.5 8.3E-14 6E-18 129.0 12.9 105 627-736 2-109 (109)
22 d2hkja3 d.122.1.2 (A:10-228) T 99.4 4.5E-13 3.2E-17 140.1 12.4 108 974-1087 19-139 (219)
23 d1p97a_ d.110.3.7 (A:) Hypoxia 99.4 3E-13 2.2E-17 126.0 8.4 106 629-739 7-113 (114)
24 d1bywa_ d.110.3.6 (A:) Erg pot 99.4 1.3E-12 9.3E-17 120.9 12.6 104 630-737 3-110 (110)
25 d1th8a_ d.122.1.3 (A:) Anti-si 99.4 1.9E-12 1.4E-16 125.2 12.7 92 976-1082 38-135 (139)
26 d1jnua_ d.110.3.6 (A:) Photore 99.3 2.2E-12 1.6E-16 117.9 11.6 100 630-734 2-104 (104)
27 d1v9ya_ d.110.3.2 (A:) Direct 99.3 2.8E-12 2E-16 118.4 12.2 111 620-733 3-113 (113)
28 d1i58a_ d.122.1.3 (A:) Histidi 99.3 5.6E-12 4.1E-16 127.8 15.4 119 955-1085 28-188 (189)
29 d1ew0a_ d.110.3.2 (A:) Histidi 99.3 2.2E-12 1.6E-16 122.6 10.9 103 735-842 2-130 (130)
30 d1xj3a1 d.110.3.2 (A:154-259) 99.3 3.4E-12 2.5E-16 116.2 10.1 106 629-737 1-106 (106)
31 d1y8oa2 d.122.1.4 (A:177-301) 99.2 3.4E-11 2.5E-15 113.6 13.4 99 932-1040 13-125 (125)
32 d1n9la_ d.110.3.6 (A:) Putativ 99.2 1.5E-11 1.1E-15 113.4 9.7 80 764-843 5-109 (109)
33 d1bywa_ d.110.3.6 (A:) Erg pot 99.1 7.8E-11 5.7E-15 108.6 10.1 80 765-844 4-110 (110)
34 d2c2aa1 a.30.2.1 (A:232-320) S 99.1 3.1E-11 2.3E-15 107.0 6.4 84 838-926 1-88 (89)
35 d1jnua_ d.110.3.6 (A:) Photore 99.0 2.1E-10 1.6E-14 104.3 8.3 77 765-841 3-104 (104)
36 d1p97a_ d.110.3.7 (A:) Hypoxia 99.0 2.4E-10 1.8E-14 105.8 8.7 82 765-846 9-113 (114)
37 d1nwza_ d.110.3.1 (A:) Photoac 99.0 6.4E-10 4.7E-14 105.0 10.1 107 619-734 18-125 (125)
38 d1xj3a1 d.110.3.2 (A:154-259) 99.0 6.6E-10 4.8E-14 100.6 9.5 79 763-843 1-105 (106)
39 d1mzua_ d.110.3.1 (A:) PYP dom 99.0 3.7E-10 2.7E-14 104.2 7.8 95 620-719 5-100 (110)
40 d1v9ya_ d.110.3.2 (A:) Direct 99.0 1.1E-09 8.2E-14 100.3 10.4 85 751-840 3-113 (113)
41 d1ll8a_ d.110.3.5 (A:) N-termi 98.9 4.5E-10 3.3E-14 104.1 3.9 108 625-735 5-113 (114)
42 d1mc0a2 d.110.2.1 (A:402-555) 98.7 1.2E-07 8.4E-12 91.5 17.1 142 230-399 1-143 (154)
43 d1oj5a_ d.110.3.8 (A:) PAS dom 98.4 7.9E-08 5.7E-12 87.9 6.0 88 631-723 5-95 (109)
44 d1joya_ a.30.2.1 (A:) EnvZ his 98.4 1E-07 7.5E-12 78.7 5.4 55 862-921 12-67 (67)
45 d1mc0a1 d.110.2.1 (A:215-401) 98.3 4.1E-06 3E-10 83.8 15.6 144 224-398 13-158 (187)
46 d1ll8a_ d.110.3.5 (A:) N-termi 98.3 5.1E-07 3.7E-11 82.8 7.6 77 764-842 10-113 (114)
47 d1nwza_ d.110.3.1 (A:) Photoac 98.2 4.7E-07 3.4E-11 84.7 6.3 86 749-841 17-125 (125)
48 d1mzua_ d.110.3.1 (A:) PYP dom 98.1 1.1E-06 7.9E-11 80.2 6.2 73 751-827 5-101 (110)
49 d1oj5a_ d.110.3.8 (A:) PAS dom 97.7 1.9E-05 1.4E-09 71.6 5.9 73 765-837 5-103 (109)
50 d1vhma_ d.110.2.1 (A:) Hypothe 97.5 0.0017 1.2E-07 62.4 17.7 145 212-397 5-151 (159)
51 d1h7sa2 d.122.1.2 (A:29-231) D 97.3 0.00034 2.4E-08 70.4 9.6 79 978-1074 7-98 (203)
52 d1b63a2 d.122.1.2 (A:-2-216) D 97.1 0.00071 5.1E-08 68.7 10.4 80 978-1075 25-117 (218)
53 d1f5ma_ d.110.2.1 (A:) Hypothe 96.0 0.077 5.6E-06 51.2 16.3 131 229-394 37-172 (176)
54 d2oola2 d.110.3.9 (A:26-139) S 95.6 0.0085 6.2E-07 53.7 6.6 50 631-681 20-70 (114)
55 d1pvga2 d.122.1.2 (A:7-245) DN 94.9 0.02 1.5E-06 58.3 7.5 74 977-1062 53-148 (239)
56 d1ei1a2 d.122.1.2 (A:2-220) DN 94.8 0.045 3.3E-06 54.8 9.7 75 976-1062 33-127 (219)
57 d1s14a_ d.122.1.2 (A:) Topoiso 94.2 0.022 1.6E-06 54.4 5.5 87 977-1083 5-92 (168)
58 d1kija2 d.122.1.2 (A:9-220) DN 93.9 0.085 6.2E-06 52.5 9.4 76 974-1061 23-118 (212)
59 d2iwxa1 d.122.1.1 (A:2-214) HS 92.7 0.049 3.6E-06 54.2 5.2 76 971-1060 22-129 (213)
60 d1uyla_ d.122.1.1 (A:) HSP90 { 91.8 0.1 7.4E-06 51.7 6.4 70 980-1060 27-128 (208)
61 d2gqpa1 d.122.1.1 (A:74-337) H 89.5 0.21 1.5E-05 49.9 6.2 72 980-1062 26-134 (227)
62 d2veaa3 d.110.3.9 (A:4-130) Ph 78.6 0.61 4.5E-05 41.9 3.5 46 632-678 30-76 (127)
63 d2o9ca2 d.110.3.9 (A:4-130) Ba 75.6 2.4 0.00017 37.8 6.7 39 631-670 38-77 (127)
64 d1p0za_ d.110.6.1 (A:) Sensor 63.2 28 0.002 30.3 11.3 77 629-736 51-127 (131)
65 d3c2wa3 d.110.3.9 (A:5-117) Ba 55.5 8.8 0.00064 33.0 6.0 72 631-713 25-96 (113)
66 d3by8a1 d.110.6.1 (A:46-178) F 42.1 23 0.0017 31.1 6.8 78 628-737 50-127 (133)
67 d1p0za_ d.110.6.1 (A:) Sensor 41.3 51 0.0037 28.4 9.1 86 748-843 38-127 (131)
68 d1iloa_ c.47.1.1 (A:) MTH985, 40.5 9.7 0.00071 30.4 3.4 23 447-469 53-75 (77)
69 d2p7ja2 d.110.6.2 (A:9-180) GG 29.5 89 0.0065 27.8 9.1 110 611-736 51-167 (172)
70 d3by8a1 d.110.6.1 (A:46-178) F 28.5 50 0.0037 28.7 6.7 71 764-843 52-126 (133)
71 d2p7ja2 d.110.6.2 (A:9-180) GG 25.4 1.1E+02 0.0083 27.0 9.1 97 744-842 53-166 (172)
No 1
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00 E-value=4.7e-50 Score=413.89 Aligned_cols=179 Identities=37% Similarity=0.644 Sum_probs=172.8
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHh
Q 001353 214 KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFL 293 (1093)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l 293 (1093)
+++..++.+|++ +.|+++||++||+|||++|||||||||||++||+|+||||++.++++|+||++||++|||++++++
T Consensus 4 ~~l~~~~~~ir~--s~dl~~Il~tav~evr~~L~~DRV~IYrf~~d~~g~vvaEs~~~~~~S~lg~~~p~~~~~~~~~~~ 81 (187)
T d2o9ca1 4 HALRNAMFALES--APNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARAL 81 (187)
T ss_dssp HHHHHHHHHHHH--CCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHhCCCEeEEEEECCCCCEEEEEEEECCCCCCCCCCccChHHHHHHHHHH
Confidence 456789999999 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEecCCCCCccccc--ccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeec
Q 001353 294 FKQNRVRMICDCHAIPVMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHH 371 (1093)
Q Consensus 294 ~~~~~~r~i~d~~~~~~~l~~--~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~ 371 (1093)
|.+|++|+|+|++++++++.+ ++.++.++||+.++||++||||++||+||||+|+|+|||+++| +|||||+|||
T Consensus 82 ~~~~~~~~i~dv~~~~~~l~~~~~~~~~~~~dl~~~~l~~~s~~~~~~L~~~~vkA~L~vPI~~~~----~LWGLL~~H~ 157 (187)
T d2o9ca1 82 YTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGG----QLWGLIACHH 157 (187)
T ss_dssp HHHSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEETT----EEEEEEEEEE
T ss_pred HHcCCeEEEeecccCccccccccccccCCCcccccchhccccHHHHHHHHhcCCCeEEEEEEEECC----eeEEEEEEEC
Confidence 999999999999999999876 6788999999999999999999999999999999999999999 9999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHH
Q 001353 372 TSPRYIPFPLRYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 372 ~~p~~~~~~~r~~~~~l~~~~~~~l~~ 398 (1093)
|+||+|++++|.+||+|++++|++|..
T Consensus 158 ~~pr~~~~~~r~~~e~l~~~ls~~l~~ 184 (187)
T d2o9ca1 158 QTPYVLPPDLRTTLESLGRLLSLQVQV 184 (187)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999854
No 2
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=100.00 E-value=7.3e-47 Score=394.10 Aligned_cols=184 Identities=41% Similarity=0.792 Sum_probs=173.9
Q ss_pred hHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHH
Q 001353 210 VQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQA 289 (1093)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~ 289 (1093)
+..|+++..++++|++ ++|+++||++||+|||++||+||||||||++||+|+||||++.++++|++|.+||++|||++
T Consensus 4 ~~~~~L~~~ii~~Ir~--Sldl~~Il~tav~eir~lL~~DRV~iy~f~~d~~g~vvaEs~~~~~~s~lg~~~~~~~~~~~ 81 (196)
T d2veaa1 4 LGFYHMANAALNRLRQ--QANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQP 81 (196)
T ss_dssp TTTTHHHHHHHHCC------CHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHH
T ss_pred HHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCCcceEEEeecCCCCCcccccchhHHHHHH
Confidence 4578999999999999 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCeEEEecCCCCCccccc--ccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEE
Q 001353 290 ARFLFKQNRVRMICDCHAIPVMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLV 367 (1093)
Q Consensus 290 ~r~l~~~~~~r~i~d~~~~~~~l~~--~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~ 367 (1093)
++.+|.++++|+|+|++++++++.+ ++.++.++||+.+++|++||||++||+||||+|+|+|||+++| +|||||
T Consensus 82 ~~~~~~~~~~~~i~dv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~s~~~~~~L~~~~vka~L~vPI~~~~----~LwGlL 157 (196)
T d2veaa1 82 ARRLFIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLTESILRSAYHCHLTYLKNMGVGASLTISLIKDG----HLWGLI 157 (196)
T ss_dssp HHHHHHHCSEEEESCSSSCCEEEESSEETTTTEECCCTTCSSBCCCHHHHHHHHHHTCSEEEEEEEEETT----EEEEEE
T ss_pred HHHHHHcCCcEEEcchhhcccccccccCcccCCCcccccceecCCCHHHHHHHHHcCCeEEEEEEEEECC----EEEEEE
Confidence 9999999999999999999999875 6788999999999999999999999999999999999999998 999999
Q ss_pred EeecCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 001353 368 VCHHTSPRYIPFPLRYACEFLVQAFSLQLYME 399 (1093)
Q Consensus 368 ~~h~~~p~~~~~~~r~~~~~l~~~~~~~l~~~ 399 (1093)
+||||+||+||+++|.+||++++++|.++...
T Consensus 158 ~~H~c~pr~~~~~~r~~~e~l~~~~s~~~~~~ 189 (196)
T d2veaa1 158 ACHHQTPKVIPFELRKACEFFGRVVFSNISAQ 189 (196)
T ss_dssp EEEESSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988644
No 3
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=100.00 E-value=1.9e-45 Score=383.43 Aligned_cols=181 Identities=35% Similarity=0.659 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHH
Q 001353 211 QSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAA 290 (1093)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~ 290 (1093)
+.++++.+++++|++ ++|+++||++||+|||++||+||||||||++||+|+||||++.++++|++|.+||++|+|...
T Consensus 5 ~~~r~l~~i~~~Ir~--sldl~~Il~tav~eir~~L~~DRv~Iy~f~~~~~~~vvaEs~~~~~~s~lg~~~~~~~~~~~~ 82 (194)
T d2oola1 5 EFFRSVRVAIRRLQT--AADLPTACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQS 82 (194)
T ss_dssp HHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHH
T ss_pred HHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCcEEEEeecCCCCCcccCCccChHHHHHHH
Confidence 567899999999999 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhcCCeEEEecCCCCCccccc--ccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEE
Q 001353 291 RFLFKQNRVRMICDCHAIPVMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVV 368 (1093)
Q Consensus 291 r~l~~~~~~r~i~d~~~~~~~l~~--~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~ 368 (1093)
++.|.+|++|+|+|++++++++++ +..++++.|++.+.+|+++|||++||+||||+|+|+|||+++| +|||||+
T Consensus 83 ~~~~~~~~~~~i~dv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vkA~L~vPI~~~~----~LWGlL~ 158 (194)
T d2oola1 83 RALYTINPVRIIPDIGYRPSPLVPDINPRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIVRDN----RLWGMIS 158 (194)
T ss_dssp HHHHHHSCEEEESCTTCCCEEEESCCCTTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEEETT----EEEEEEE
T ss_pred HHHHhcCceEEeeeccCCcceeecccccccCCCccccchhhccCCHHHHHHHHhCCCceEEEeehhcCC----ccEEEEE
Confidence 999999999999999999999987 4677999999999999999999999999999999999999998 9999999
Q ss_pred eecCCCCCCCchHHHHHHHHHHHHHHHHH
Q 001353 369 CHHTSPRYIPFPLRYACEFLVQAFSLQLY 397 (1093)
Q Consensus 369 ~h~~~p~~~~~~~r~~~~~l~~~~~~~l~ 397 (1093)
||||+||+|++++|.+|++|+|++|.||.
T Consensus 159 ~hq~~pr~~~~~~~~~~e~l~q~~a~ql~ 187 (194)
T d2oola1 159 CHNLTPRFVSYEVRQACELIAQVLTWQIG 187 (194)
T ss_dssp EEESSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 4
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=100.00 E-value=6.2e-44 Score=371.10 Aligned_cols=175 Identities=43% Similarity=0.743 Sum_probs=166.6
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHh
Q 001353 214 KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFL 293 (1093)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l 293 (1093)
..+.+++.+|++ ++|+++||++||+|||++|||||||||||++||+|+||||++.++|+|+||.+||++|+|...+.+
T Consensus 8 ~~~~ri~~~Ir~--sldl~~Il~ttv~evr~lL~~DRV~IYqf~~d~~g~vvaEs~~~~~~s~lg~~~~~~~~~~~~~~~ 85 (192)
T d3c2wa1 8 LNAQRIIAQVQL--HNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRL 85 (192)
T ss_dssp THHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcEEEEEecCCCCCCcCCCccchhhHHHHHHHH
Confidence 345668999999 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEecCCCCCccccc--ccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeec
Q 001353 294 FKQNRVRMICDCHAIPVMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHH 371 (1093)
Q Consensus 294 ~~~~~~r~i~d~~~~~~~l~~--~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~ 371 (1093)
|.+|++|+|+|++..|+++++ ++.+..++|++.+.+|++||||++||++|||+|+|+|||+++| +|||||+|||
T Consensus 86 ~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~sp~~~~~L~~~~vkA~LivPI~~~~----~LWGLL~~hq 161 (192)
T d3c2wa1 86 YIQNPIRLIADVAYTPMRVFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGG----KLWGLFSCHH 161 (192)
T ss_dssp HHSCSEEEESCTTCCCEEEESSEETTTTEECCCTTCSSBCCCHHHHHHHHHHTCCEEEEEEEEETT----EEEEEEEEEE
T ss_pred HHhCCeEEEeccccCccceecCcCcccCCCccccchhhccCCHHHHHHHHhcCcceEEEEEEeECC----eeEEEEEEEc
Confidence 999999999999999999987 5778899999999999999999999999999999999999999 9999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHH
Q 001353 372 TSPRYIPFPLRYACEFLVQAFSL 394 (1093)
Q Consensus 372 ~~p~~~~~~~r~~~~~l~~~~~~ 394 (1093)
|+||+.+++.+.+|++++|+.+.
T Consensus 162 cs~~~~~~e~~~~~el~~Qv~~~ 184 (192)
T d3c2wa1 162 MSPKLIPYPVRMSFQIFSQVCSA 184 (192)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Confidence 99998899999999998887654
No 5
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]}
Probab=100.00 E-value=1.4e-36 Score=310.20 Aligned_cols=164 Identities=35% Similarity=0.587 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCC-CCCCccCCccCCCCchHHHHHhHhcCCeEEEecCCCCC
Q 001353 231 IGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRS-DLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIP 309 (1093)
Q Consensus 231 ~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~-~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~ 309 (1093)
|+++|++||+|||+++|+|||+||+|++||+|+||||++.+ ..+|++|.++|++|+|.+++++|.++++++|+|+++.|
T Consensus 1 L~~il~~av~el~~~l~~dRv~iy~f~~d~~~~vvae~~~~~~~~s~lg~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~ 80 (170)
T d2k2na1 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (170)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEECCCCCccccCCcccccccHHHHHHHHHcCCeEEEeccccCC
Confidence 47899999999999999999999999999999999999976 56789999999999999999999999999999999999
Q ss_pred ccccc--ccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCCCCCchHHHHHHH
Q 001353 310 VMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEF 387 (1093)
Q Consensus 310 ~~l~~--~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~~~~~~~r~~~~~ 387 (1093)
.++.+ ......+.|++.+.+|+++|||++||+||||+|+|++||+.+| +|||+|+||||+||.|+++++.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~s~l~vPi~~~~----~lwGlL~~h~~~~r~W~~~Ei~ll~~ 156 (170)
T d2k2na1 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQ----ELWGLLVSHHAEPRPYSQEELQVVQL 156 (170)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSCSS----CCCEEEEEEECSCCCCCHHHHHHHHH
T ss_pred eeeccccccccCCcccccchhhccCcHHHHHHHHcccccceEEEeeecCC----ceEEEEEEecCCCCcCCHHHHHHHHH
Confidence 99875 3456788999999999999999999999999999999999888 99999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 001353 388 LVQAFSLQLYM 398 (1093)
Q Consensus 388 l~~~~~~~l~~ 398 (1093)
+|.++|++|++
T Consensus 157 iA~qlaiAI~q 167 (170)
T d2k2na1 157 LADQVSIAIAQ 167 (170)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999953
No 6
>d2veaa2 d.110.2.4 (A:327-514) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=100.00 E-value=1.9e-34 Score=293.72 Aligned_cols=166 Identities=28% Similarity=0.535 Sum_probs=147.1
Q ss_pred HHHhhccCC-CcccccCCcchhhhccCCEEEEEECCeEEEecCCCCHHHHHHHHHHHHhccCCCceeeeccccccCCCCc
Q 001353 418 LCDMLLRDA-PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGA 496 (1093)
Q Consensus 418 ~~~~~~~~~-~~~~~~~~~~~~~l~~a~g~al~~~~~~~~~G~~p~~~~~~~l~~~l~~~~~~~~~~~t~~l~~~~~p~~ 496 (1093)
+..|...++ ..+|..+.++|++|++|||+||+++|+++++|.||+.++|.+|+.||.....+ .+|+|++|+. .||++
T Consensus 13 ~~~l~~~~~~~~~l~~~~~~ll~l~~A~G~al~~~~~~~~~G~~P~~~~i~~L~~wl~~~~~~-~~~~t~~L~~-~~p~~ 90 (188)
T d2veaa2 13 LDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDEKAVQYLLQWLENREVQ-DVFFTSSLSQ-IYPDA 90 (188)
T ss_dssp HHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETTEEEEEESCCCHHHHHHHHHHHHHTTCC-SCEEESCGGG-TSGGG
T ss_pred HHHHhccCCHHHHHHhCCHHHHhhcCCCEEEEEECCEEEEeCCCcCHHHHHHHHHHHHhcCCC-Cceeccchhh-hCcch
Confidence 334444444 36788889999999999999999999999999999999999999999998665 6999999997 59999
Q ss_pred cccccccccEEEEeeCCCcEEEEeecCcCcEEEecCCCCCCccC--C-CCCccccCchhHHHHHHhhccccccchhhhhh
Q 001353 497 ALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHK--D-NGGKMHPRSSFKAFLEVVKNRSFPWEVSEINA 573 (1093)
Q Consensus 497 ~~~~~~~~G~l~~~~~~~~~l~wfR~e~~~~v~W~G~p~~~~~~--~-~~~~l~Pr~SF~~w~e~v~g~s~pW~~~El~a 573 (1093)
..+.+.+||+|+++|+.++||+|||+|+.++|+|||+|+|++.. + ++.+|+||+||+.|+|+|+|+|.||+..|+++
T Consensus 91 ~~~~~~asGvLai~ls~~~~llwFR~E~~~~v~WAG~P~k~~~~~~~~~~~rLsPR~SFe~W~E~v~g~S~pW~~~ei~~ 170 (188)
T d2veaa2 91 VNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKIELHPRQSFDLWKEIVRLQSLPWQSVEIQS 170 (188)
T ss_dssp GGGTTTCSEEEEEECSSSCEEEEEECCCCEEEEEESCGGGSEEEEC---CCEEEECSCCCEEEEEECSCCCCCCHHHHHH
T ss_pred hhhccceeEEEEEEcCCCCEEEEEcCCceEEEEeCCCCCCcccCCCCCCCceeCccccHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999999999998999999999999999999999998752 2 35699999999999999999999999999999
Q ss_pred hhHHHHHHHHHH
Q 001353 574 IHSLQIVMRDSF 585 (1093)
Q Consensus 574 a~sL~liL~~sl 585 (1093)
+.+|+..|.+.+
T Consensus 171 A~~Lr~~l~~~v 182 (188)
T d2veaa2 171 ALALKKAIVNLI 182 (188)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999966554443
No 7
>d3c2wa2 d.110.2.4 (A:310-494) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.98 E-value=1e-32 Score=280.26 Aligned_cols=152 Identities=25% Similarity=0.500 Sum_probs=126.6
Q ss_pred cccccCCcchhhhccCCEEEEEECCeEEEecCCCCHHHHHHHHHHHHhccCCCceeeeccccccCCCCccccccccccEE
Q 001353 428 FSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMA 507 (1093)
Q Consensus 428 ~~~~~~~~~~~~l~~a~g~al~~~~~~~~~G~~p~~~~~~~l~~~l~~~~~~~~~~~t~~l~~~~~p~~~~~~~~~~G~l 507 (1093)
.++..+.++|++|++|||+|++++|++.+.| +|++.++..|+.||..... ..+|+||+|+. .||++..+.+ +||||
T Consensus 28 ~~l~~~~~~ll~l~~AdG~ai~~~g~~~~~g-~p~~~~i~~l~~wl~~~~~-~~v~~Td~L~~-~~p~a~~~~~-aaGvL 103 (185)
T d3c2wa2 28 GALAHPDDGIAALIPCDGALVMLGGRTLSIR-GDFERQAGNVLQRLQRDPE-RDIYHTDNWPQ-PSEDSPDGGD-CCGVL 103 (185)
T ss_dssp HHHTCTTTSHHHHTTCSEEEEEETTEEEEES-SCCHHHHHHHHHHHTTSTT-CCEEEESCC--------------CCEEE
T ss_pred HHHhcCCHHHHhhhCCCEEEEEECCEEEEcC-CCCHHHHHHHHHHHhhCCC-CCeEEeCCccc-cccchhhhcc-cceEE
Confidence 4677778999999999999999999999877 7999999999999987654 47999999997 5999988876 89999
Q ss_pred EEeeCC--CcEEEEeecCcCcEEEecCCCCCCccC-CCCCccccCchhHHHHHHhhccccccchhhhhhhhHHHHHHHH
Q 001353 508 TARITS--KDFLFWFRSHTAKEVKWGGAKHHPEHK-DNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRD 583 (1093)
Q Consensus 508 ~~~~~~--~~~l~wfR~e~~~~v~W~G~p~~~~~~-~~~~~l~Pr~SF~~w~e~v~g~s~pW~~~El~aa~sL~liL~~ 583 (1093)
+++|+. ++||+|||+|+.++|+|||+|+|++.. ++|.+|+||+||+.|+|+|+|+|.||+..|++++.+|+..|.+
T Consensus 104 ai~l~~~~~~~llwFR~E~~~~V~WAG~P~k~~~~~~~g~rLsPR~SFe~W~E~vrg~S~pW~~~ei~~A~~Lr~~l~e 182 (185)
T d3c2wa2 104 AIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLME 182 (185)
T ss_dssp EEEEETTTTEEEEEEECSCCCSEEEESCCCCCSCCBTTBSTTSHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCCCEEEEEcCcceEEEEeCCCCccccccCCCCCccCchhhHHHHHHHHcCcCCCCCHHHHHHHHHHHHHHHH
Confidence 999976 689999999999999999999999764 4577999999999999999999999999999999999665543
No 8
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=99.96 E-value=7.2e-29 Score=249.55 Aligned_cols=148 Identities=18% Similarity=0.294 Sum_probs=130.9
Q ss_pred cceeeeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCC---eEEEEEE
Q 001353 929 LKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDG---WVEIKVL 1005 (1093)
Q Consensus 929 l~~~~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g---~I~I~v~ 1005 (1093)
+++++|+|.+++++++..++..+..+++.+.++.+...| ..+.+|+.+|.|||.|||.||+||++. ++ .|.|.+.
T Consensus 2 l~~e~v~l~~li~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~v~~D~~~l~qvl~NLi~NAik~t~~-~~~~~~i~i~~~ 79 (161)
T d2c2aa2 2 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCP-VEAYIDPTRIRQVLLNLLNNGVKYSKK-DAPDKYVKVILD 79 (161)
T ss_dssp CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSC-CEEEECHHHHHHHHHHHHHHHHHTCCT-TCTTCEEEEEEE
T ss_pred CccEEECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCC-EEEEECHHHHHHHHHHHHHHHHHhhhc-CCCcceeeEEEE
Confidence 567899999999999999999999999999988776544 579999999999999999999999987 43 5777777
Q ss_pred eCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-------CCCCccchHHHHHHHHHHcCCEEEEEeeCC-ee
Q 001353 1006 PGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-------WTTPEGLGLKLSRKLLIMMNGRVRYVRENS-KC 1077 (1093)
Q Consensus 1006 ~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-------~~~GtGLGL~ivr~ive~hgG~I~v~S~~g-gt 1077 (1093)
..++ .+.|+|+|+|+|||++.+++||+|||+ ...|+||||+|||++++.|||+|+++|.+| ||
T Consensus 80 ~~~~---------~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~~~~~G~GLGL~i~k~iv~~hgG~i~v~s~~~~Gt 150 (161)
T d2c2aa2 80 EKDG---------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGS 150 (161)
T ss_dssp EETT---------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEEEEETTTEE
T ss_pred ecCC---------EEEEEEEEcCCCCCHHHHHHhhCCcEEcCCCCCCCCCcccHHHHHHHHHHHHCCCEEEEEecCCCee
Confidence 7777 899999999999999999999999997 345999999999999999999999999987 59
Q ss_pred EEEEEEeecC
Q 001353 1078 YFVIDLELKT 1087 (1093)
Q Consensus 1078 ~F~v~LPlp~ 1087 (1093)
+|+|+||...
T Consensus 151 ~f~i~lP~~~ 160 (161)
T d2c2aa2 151 RFFVWIPKDR 160 (161)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccc
Confidence 9999999753
No 9
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.95 E-value=4.7e-28 Score=239.81 Aligned_cols=142 Identities=15% Similarity=0.204 Sum_probs=120.6
Q ss_pred ceeeeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCc
Q 001353 930 KSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLK 1009 (1093)
Q Consensus 930 ~~~~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~ 1009 (1093)
+.+++||.+++++++..+....... .+.+..++. ..+.+|+.+|.|+|.|||.||+||++. +.|.|++...++
T Consensus 2 d~~pvdl~~l~~~~~~~~~~~~~~~--~i~~~~~~~---~~v~~d~~~l~~vl~NLl~NAiky~~~--~~I~i~~~~~~~ 74 (148)
T d1ysra1 2 DHVPVDITDLLDRAAHDAARIYPDL--DVSLVPSPT---CIIVGLPAGLRLAVDNAIANAVKHGGA--TLVQLSAVSSRA 74 (148)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHSTTC--EEEECSCCC---CEEEECHHHHHHHHHHHHHHHHHTTCC--SEEEEEEEEETT
T ss_pred CCCcccHHHHHHHHHHHHHHHcCCC--cEEEecCCC---cEEEECHHHHHHHHHHHHHHHHHhcCC--cEEEEEEEecCC
Confidence 3578999999999999998876654 455554443 579999999999999999999999975 799999988888
Q ss_pred cccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC----CCCCccchHHHHHHHHHHcCCEEEEEeeCCe-eEEEEEEe
Q 001353 1010 LIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ----WTTPEGLGLKLSRKLLIMMNGRVRYVRENSK-CYFVIDLE 1084 (1093)
Q Consensus 1010 ~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~----~~~GtGLGL~ivr~ive~hgG~I~v~S~~gg-t~F~v~LP 1084 (1093)
.+.|+|.|+|+|||++.+++||+|||+ +.+|+||||+|||+|++.|||+|+++|.+++ |+|+|+||
T Consensus 75 ---------~~~i~V~D~G~Gi~~~~~~~ife~f~r~~~~~~~G~GLGL~i~~~iv~~hgG~i~~~s~~~~Gt~f~i~lP 145 (148)
T d1ysra1 75 ---------GVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLP 145 (148)
T ss_dssp ---------EEEEEEEESSSCCCGGGHHHHHTSCC-----------CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEE
T ss_pred ---------EEEEEEEEcCCCCCHHHHHHhcCccccCCCCCCCCccHHHHHHHHHHHHcCCEEEEEEcCCCeEEEEEEEE
Confidence 999999999999999999999999997 4569999999999999999999999999874 99999999
Q ss_pred ecC
Q 001353 1085 LKT 1087 (1093)
Q Consensus 1085 lp~ 1087 (1093)
+|.
T Consensus 146 ~~s 148 (148)
T d1ysra1 146 GPS 148 (148)
T ss_dssp CCC
T ss_pred cCC
Confidence 873
No 10
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}
Probab=99.95 E-value=5.3e-27 Score=231.47 Aligned_cols=139 Identities=19% Similarity=0.287 Sum_probs=127.6
Q ss_pred eeeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCccc
Q 001353 932 EEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLI 1011 (1093)
Q Consensus 932 ~~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~ 1011 (1093)
+.+++.+++++++..+...+..+++++.++++++ +.+.+|+..|.|||.||+.||+||++. .|+|++...++
T Consensus 2 e~~~l~~ll~~~~~~~~~~~~~k~i~i~~~~~~~---~~~~~d~~~l~~vl~NLl~NAik~~~~---~i~i~~~~~~~-- 73 (146)
T d1id0a_ 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPE---ISFVGEQNDFVEVMGNVLDNACKYCLE---FVEISARQTDE-- 73 (146)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTT---CEEESCHHHHHHHHHHHHHHHHHHCSS---EEEEEEEECSS--
T ss_pred CccCHHHHHHHHHHHHHHHHHHCCCEEEEEcCCC---cEEEECHHHHHHHHHHHHHHHHHhhcC---CEEEEEEeeCC--
Confidence 4567999999999999999999999999999876 458999999999999999999999985 58888888877
Q ss_pred cCCCceeEEEEEEecCCCCCChhhHhhhccCCCC---CCCCccchHHHHHHHHHHcCCEEEEEeeCCe-eEEEEEEee
Q 001353 1012 KDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ---WTTPEGLGLKLSRKLLIMMNGRVRYVRENSK-CYFVIDLEL 1085 (1093)
Q Consensus 1012 ~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~---~~~GtGLGL~ivr~ive~hgG~I~v~S~~gg-t~F~v~LPl 1085 (1093)
.+.|+|.|+|+|||++.+++||+|||+ ..+|+||||+|||+|++.|||+|+++|.+++ |+|+|.||.
T Consensus 74 -------~~~i~V~D~G~Gi~~~~~~~iF~~F~r~~~~~~G~GLGL~I~k~iv~~h~G~i~~~s~~~~Gt~f~i~lP~ 144 (146)
T d1id0a_ 74 -------HLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGR 144 (146)
T ss_dssp -------CEEEEEEESSSCCCGGGTTGGGSCCCCTTCCCTTCCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEECC
T ss_pred -------EEEEEEEeeCCCCCHHHHHHHcCCcccCCCCCCCeeHHHHHHHHHHHHcCCEEEEEEcCCCeeEEEEEEeC
Confidence 899999999999999999999999997 5579999999999999999999999998874 999999985
No 11
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=3e-27 Score=237.27 Aligned_cols=146 Identities=14% Similarity=0.228 Sum_probs=125.8
Q ss_pred ccceeeeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEEeC
Q 001353 928 ELKSEEFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVEIKVLPG 1007 (1093)
Q Consensus 928 ~l~~~~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~ 1007 (1093)
++..+.+||.+++++++..+... .+.+++ .++++. +.+.+|+.+|.|||.|||.||+||++ +.|.|++...
T Consensus 4 el~~e~~dl~~ll~e~i~~~~~~--~~~i~~--~~~~~~--~~v~~d~~~l~~vl~NLi~NAik~~~---~~i~i~~~~~ 74 (161)
T d1bxda_ 4 EMPMEMADLNAVLGEVIAAESGY--EREIET--ALYPGS--IEVKMHPLSIKRAVANMVVNAARYGN---GWIKVSSGTE 74 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHCSS--SCCEEE--ECCSSC--CCEEECHHHHHHHHHHHHHHHHTTCC---SCEEEEEEEE
T ss_pred CCCcccCcHHHHHHHHHHHhhcc--cCcEEE--EecCCC--eEEEECHHHHHHHHHHHHHHHHHhCC---CeEEEEEEEe
Confidence 56778999999999999866432 344444 444442 46899999999999999999999984 6899999888
Q ss_pred CccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-----CCCCccchHHHHHHHHHHcCCEEEEEeeCC-eeEEEE
Q 001353 1008 LKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-----WTTPEGLGLKLSRKLLIMMNGRVRYVRENS-KCYFVI 1081 (1093)
Q Consensus 1008 ~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-----~~~GtGLGL~ivr~ive~hgG~I~v~S~~g-gt~F~v 1081 (1093)
.+ ++.|+|+|||+|||++.+++||+|||+ ..+|+||||+|||+|++.|||+|+++|.++ ||+|+|
T Consensus 75 ~~---------~~~i~V~D~G~GI~~e~~~~iF~~F~r~~~~~~~~g~GLGL~ivk~iv~~hgG~i~v~s~~~~Gt~f~v 145 (161)
T d1bxda_ 75 PN---------RAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRA 145 (161)
T ss_dssp TT---------EEEEEEEEESSCSCTTGGGCSSCCCCCCSCCCCCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEE
T ss_pred CC---------EEEEEEEEcCCCCCHHHHHHHhCCceECCCCCcCCCCCchHHHHHHHHHHCCCEEEEEEcCCCcEEEEE
Confidence 88 999999999999999999999999997 346899999999999999999999999887 599999
Q ss_pred EEeecCCccC
Q 001353 1082 DLELKTRGRQ 1091 (1093)
Q Consensus 1082 ~LPlp~~~~~ 1091 (1093)
+||+|..+.+
T Consensus 146 ~lPl~~~~~~ 155 (161)
T d1bxda_ 146 WLPVPVTRAQ 155 (161)
T ss_dssp EECCCSCCCC
T ss_pred EEEeecccCC
Confidence 9999987754
No 12
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.93 E-value=1.5e-26 Score=231.39 Aligned_cols=150 Identities=18% Similarity=0.325 Sum_probs=106.3
Q ss_pred eeeHHHHHHHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCCeEE-EEEEeCCc-c
Q 001353 933 EFLLGNILDAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDGWVE-IKVLPGLK-L 1010 (1093)
Q Consensus 933 ~v~L~~ll~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~-I~v~~~~~-~ 1010 (1093)
..++.+++++++..+...+. +++++..++++++|. +.+|+.+|.|||.||+.||++|++. ++.+. +....... .
T Consensus 3 ~~~i~evie~v~~l~~~~~~-~~i~i~~~~~~~~~~--v~~D~~~l~qvl~NLl~NA~~~~~~-~~~~~~~~~~~~~~~~ 78 (156)
T d1r62a_ 3 TESIHKVAERVVTLVSMELP-DNVRLIRDYDPSLPE--LAHDPDQIEQVLLNIVRNALQALGP-EGGEIILRTRTAFQLT 78 (156)
T ss_dssp EECHHHHHHHHHHHHTTTCC-TTEEEEEECCTTCCC--EEECHHHHHHHHHHHHHHHHHHHGG-GCEEEEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHcc-CCCEEEEEcCCCCCE--EEECHHHHHHHHHHHHHHHHHhhhc-CCCceeeeccccceee
Confidence 56889999999999887764 579999999998874 8899999999999999999999877 44332 22111110 0
Q ss_pred ccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-CCCCccchHHHHHHHHHHcCCEEEEEeeCCeeEEEEEEeec
Q 001353 1011 IKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-WTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLELK 1086 (1093)
Q Consensus 1011 ~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~~~GtGLGL~ivr~ive~hgG~I~v~S~~ggt~F~v~LPlp 1086 (1093)
.........+.|+|.|||+|||++.+++||+|||+ +..|+||||+|||+|++.|||+|+++|++|||+|+|.||+.
T Consensus 79 ~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~pf~s~k~~G~GLGL~i~~~iv~~hgG~i~v~s~~gGt~f~i~LPl~ 155 (156)
T d1r62a_ 79 LHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFSVYLPIR 155 (156)
T ss_dssp ETTEEEEEEEEEEEEEECTTC--------------------CHHHHHHHHHHHHTTCEEEEEEETTEEEEEEEEEEE
T ss_pred eccccCCceEEEEEecCCCCCCHHHHHhhcccceecCCCCCCchHHHHHHHHHHCCCEEEEEEeCCcEEEEEEEEec
Confidence 11112334799999999999999999999999998 77899999999999999999999999999999999999985
No 13
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=99.91 E-value=2.8e-25 Score=212.01 Aligned_cols=120 Identities=24% Similarity=0.364 Sum_probs=96.4
Q ss_pred CChhhHHHH-HhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccccccCCchHHHHHH
Q 001353 75 VPEEQITAY-LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLFTPPSGASLAK 153 (1093)
Q Consensus 75 ~~~~~~~~~-~~~i~~~g~iQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~ 153 (1093)
+++..++.| .||||+||+|||||+|||+|+++++|+|||+|+.++||+++ +.+||+++.++|++...++++.
T Consensus 4 ~~~~~l~nCe~EPIHipG~IQphG~LLald~~~~~I~~aS~N~~~~lG~~~-------~~lLG~~l~~ll~~~~~~~l~~ 76 (127)
T d2veaa3 4 LSDQSLRQLETLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSP-------EDLLGRTLGEVFDSFQIDPIQS 76 (127)
T ss_dssp HHHHHHHHHHHCCSTTCCEECTTSEEEEEETTTTEEEEEETTHHHHTSCCT-------TTSSTTTTTTTSBCC-------
T ss_pred cChhhHhhcccccCcCCCccCCCeEEEEEECCCCEEEEEcCCHHHHhCcCh-------HHHcCCCHHHHCCHHHHHHHHH
Confidence 457889999 99999999999999999999999999999999999999988 5799999999999999999998
Q ss_pred HHhcccccccCceeecccCC-CCCccEEEEEeeeC-CEEEEEeccCCCCC
Q 001353 154 AAASREISLLNPILVHSNSR-SIEKPFYAILHRID-VGIVIDLEPSKSGD 201 (1093)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~hr~~-~~~~ie~Ep~~~~~ 201 (1093)
++........+|..+..... .++..|++++||+. +.+|+||||+...+
T Consensus 77 ~l~~~~~~~~~p~~~~~~~~~~~~~~fd~~~Hr~~~~~lIlElEP~~~~~ 126 (127)
T d2veaa3 77 RLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSD 126 (127)
T ss_dssp -CCCTTHHHHSSEEEEEECC--CEEEEEEEEEECSSCCEEEEEEECCTTS
T ss_pred HhhccCcccCCCEEEEEEecCCCCeEEEEEEEEcCCCeEEEEeecCCCCC
Confidence 88777666777888765322 24567999999985 67889999997643
No 14
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Probab=99.91 E-value=6.9e-24 Score=218.61 Aligned_cols=146 Identities=15% Similarity=0.206 Sum_probs=117.9
Q ss_pred eeeeHHHHHHHHHHHHHHHhc-----cCCeEEE--eecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCC------CC
Q 001353 932 EEFLLGNILDAVVSQVMVLLR-----DKNLHLL--HDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSP------DG 998 (1093)
Q Consensus 932 ~~v~L~~ll~~v~~~~~~~~~-----~~~i~l~--~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~------~g 998 (1093)
..+++.++++++++..+.... ...+++. ...... ++..+.+|+.+|.|||.||+.||++|++.. .+
T Consensus 9 ~~~~l~~ii~da~e~~r~l~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~d~~~l~qvl~NLl~NA~~~~~~~~~~~~~~~ 87 (190)
T d1jm6a2 9 PNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNAT-QPIHMVYVPSHLYHMLFELFKNAMRATVESHESSLTLP 87 (190)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTT-SCCEEEECHHHHHHHHHHHHHHHHHHHHHHCSCTTSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhccCcccceEEEeccCCC-CCEEEEECHHHHHHHHHHHHHHHHHHhhccCccccccc
Confidence 357999999998887654322 2234443 222333 336789999999999999999999997541 12
Q ss_pred eEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-CC-----------CCccchHHHHHHHHHHcCC
Q 001353 999 WVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-WT-----------TPEGLGLKLSRKLLIMMNG 1066 (1093)
Q Consensus 999 ~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~~-----------~GtGLGL~ivr~ive~hgG 1066 (1093)
.|.|++....+ ++.|+|+|+|+|||++.+++||+|||| +. +|+||||+|||.+++.|||
T Consensus 88 ~I~v~~~~~~~---------~~~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~k~ive~hgG 158 (190)
T d1jm6a2 88 PIKIMVALGEE---------DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQG 158 (190)
T ss_dssp CEEEEEEECSS---------EEEEEEEECSCCCCGGGTTGGGCTTCCCSCCC---------CCSSCHHHHHHHHHHHTTC
T ss_pred eEEEEEEeCCe---------EEEEEEeccCCCCCHHHHHHHhCcceecCCcCcCcccccccCCCCccHHHHHHHHHHCCC
Confidence 48899888888 999999999999999999999999998 11 3999999999999999999
Q ss_pred EEEEEeeCC-eeEEEEEEeecC
Q 001353 1067 RVRYVRENS-KCYFVIDLELKT 1087 (1093)
Q Consensus 1067 ~I~v~S~~g-gt~F~v~LPlp~ 1087 (1093)
+|+++|.+| ||+|+|+||...
T Consensus 159 ~I~v~s~~g~Gt~f~i~lP~~~ 180 (190)
T d1jm6a2 159 DLQLFSMEGFGTDAVIYLKALS 180 (190)
T ss_dssp EEEEEEETTTEEEEEEEEESST
T ss_pred EEEEEecCCCceEEEEEEeCCC
Confidence 999999997 599999999543
No 15
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=99.90 E-value=6.5e-25 Score=207.37 Aligned_cols=112 Identities=29% Similarity=0.443 Sum_probs=98.1
Q ss_pred HHH-HhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccccccCCchHHHHHHHHhccc
Q 001353 81 TAY-LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLFTPPSGASLAKAAASRE 159 (1093)
Q Consensus 81 ~~~-~~~i~~~g~iQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 159 (1093)
|.| +||||+||+|||||||||+|+++++|++||+|+.++||.++ +.++|+++.++|++..++.+++++....
T Consensus 1 t~C~~EPIh~pg~IQphG~Llvld~~d~~I~~vS~N~~~lLG~~~-------~~llG~~l~dll~~~~~~~i~~~l~~~~ 73 (114)
T d2oola2 1 TECDREPIHIPGAIQPHGYLFVVSETDLRIASVSANVEDLLRQPP-------ASLLNVPIAHYLTAASAARLTHALHGGD 73 (114)
T ss_dssp CCGGGSCTTCCSEECTTSEEEEECTTTCBEEEEETTHHHHHSSCG-------GGGTTCBGGGGBCHHHHHHHHHHHCC--
T ss_pred CCcccccCcCCCccCCCcEEEEEECCCCEEEEEcCCHHHHhCCCh-------HHHcCCCHHHhCCHHHHHHHHHHHhcCC
Confidence 347 89999999999999999999999999999999999999988 6899999999999999999999988777
Q ss_pred ccccCceeecccCCCCCccEEEEEeeeCCEEEEEeccCCC
Q 001353 160 ISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKS 199 (1093)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~f~~~~hr~~~~~~ie~Ep~~~ 199 (1093)
.....|+.+......+++.|++++||+++.+||||||...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~lilElEp~~~ 113 (114)
T d2oola2 74 PAAINPIRLDVVTPDGERAFNGILHRHDSIVILELEPRDE 113 (114)
T ss_dssp --CCCSEEEEEEETTEEEEEEEEEEEETTEEEEEEECCCC
T ss_pred cccCCCEEEEEecCCCCeEEEEEEEEeCCEEEEEEecCCC
Confidence 7777888877654566789999999999999999999853
No 16
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.90 E-value=1.4e-23 Score=217.48 Aligned_cols=144 Identities=14% Similarity=0.105 Sum_probs=120.2
Q ss_pred eeeeHHHHHHHHHHHHHHHhcc---CCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCC-------CCCeEE
Q 001353 932 EEFLLGNILDAVVSQVMVLLRD---KNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS-------PDGWVE 1001 (1093)
Q Consensus 932 ~~v~L~~ll~~v~~~~~~~~~~---~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~-------~~g~I~ 1001 (1093)
..+++.++++++++.++..+.. ..+.+.++.+++ ..+.+|+.+|.|||.|||.||++|++. ..+.|.
T Consensus 8 t~~~l~~lv~~~~~~~~~~~~~~~~~~~~v~i~~~~~---~~~~~d~~~l~qvl~NLl~NAi~~t~~~~~~~~~~~~~I~ 84 (193)
T d1gkza2 8 TRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVA---ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVV 84 (193)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTT---CCEEECCHHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCCcEEEeccCCC---ceeeecHHHHHHHHHHHHHHHHHhcccCceeeccccceEE
Confidence 4678999999999887765543 234555555554 358899999999999999999999642 135799
Q ss_pred EEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-CC--------------------------CCccchH
Q 001353 1002 IKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-WT--------------------------TPEGLGL 1054 (1093)
Q Consensus 1002 I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~~--------------------------~GtGLGL 1054 (1093)
|++....+ ++.|+|.|+|+|||++.+++||+|||| +. .|+||||
T Consensus 85 i~~~~~~~---------~v~i~V~D~G~GI~~e~~~~iF~~f~tt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GlGL 155 (193)
T d1gkza2 85 ITIANNDV---------DLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGL 155 (193)
T ss_dssp EEEEECSS---------EEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSCHH
T ss_pred EEEEccCC---------EEEEEEecCCCCCCHHHHHHhcCCceecccccccccccccccccccccccccccccccCCcCH
Confidence 99888888 999999999999999999999999998 21 2899999
Q ss_pred HHHHHHHHHcCCEEEEEeeCC-eeEEEEEEeecC
Q 001353 1055 KLSRKLLIMMNGRVRYVRENS-KCYFVIDLELKT 1087 (1093)
Q Consensus 1055 ~ivr~ive~hgG~I~v~S~~g-gt~F~v~LPlp~ 1087 (1093)
+|||.+++.|||+|+++|.+| ||+|+|+||.-.
T Consensus 156 ~i~k~ive~~gG~i~v~S~~g~Gt~f~l~L~~~~ 189 (193)
T d1gkza2 156 PTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHID 189 (193)
T ss_dssp HHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSS
T ss_pred HHHHHHHHHCCCEEEEEecCCCceEEEEEECCCC
Confidence 999999999999999999998 599999998643
No 17
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.87 E-value=1.6e-23 Score=199.84 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=87.4
Q ss_pred hhhHHHH-HhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccccccCCchHHHHHHHH
Q 001353 77 EEQITAY-LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLFTPPSGASLAKAA 155 (1093)
Q Consensus 77 ~~~~~~~-~~~i~~~g~iQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~ 155 (1093)
+-.+|.| +||||+||+|||||+|||+|+++++|+|+|+|+.++||+++ +.+||+++.++|++. .+.+++.+
T Consensus 15 ~vdL~nCerEPIHipG~IQphG~LLald~~~~~I~~~S~N~~~~lG~~~-------~~llG~~l~~ll~~~-~~~~~~~~ 86 (127)
T d2o9ca2 15 EITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEP-------TVLRGQTLAALLPEQ-WPALQAAL 86 (127)
T ss_dssp CCCTTTGGGCCTTCCSEECTTSEEEEEETTTCBEEEEETTHHHHHSSCH-------HHHTTCBHHHHCTTT-HHHHHHHS
T ss_pred ccCccccccccccCCCccCCCeEEEEEECCCCEEEEECCCHHHHhCCCh-------HHHcCCCHHHHCCHH-HHHHHHHh
Confidence 3356789 99999999999999999999999999999999999999988 579999999999764 44555554
Q ss_pred hcccccccCceeecccCCCCCccEEEEEeeeCCEEEEEeccC
Q 001353 156 ASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPS 197 (1093)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~hr~~~~~~ie~Ep~ 197 (1093)
..... ...+..+... ..+++.|++++||+++.+||||||.
T Consensus 87 ~~~~~-~~~~~~~~~~-~~~~~~f~~~~Hrs~~~lilElEP~ 126 (127)
T d2o9ca2 87 PPGCP-DALQYRATLD-WPAAGHLSLTVHRVGELLILEFEPT 126 (127)
T ss_dssp CTTCC-TTCCEEEEEC-CSSSSEEEEEEEEETTEEEEEEEEE
T ss_pred hhcCc-ccccceeeee-cCCCceEEEEEEEECCEEEEEEecC
Confidence 43221 1122222221 2356789999999999999999996
No 18
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.87 E-value=3.3e-23 Score=193.86 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=90.7
Q ss_pred hHHHH-HhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccccccCCchHHHHHHHHhc
Q 001353 79 QITAY-LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157 (1093)
Q Consensus 79 ~~~~~-~~~i~~~g~iQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~ 157 (1093)
.+|.| .||||+||+|||||||||+|+ +++|+|||+|+.++||+++ ..||+.+.++|++...+.+++.+..
T Consensus 4 dLtnCdrEPIHipG~IQphG~LLald~-~~~I~~~S~N~~~~lg~~~--------~~L~~~~~~~~~~~~~~~l~~~~~~ 74 (113)
T d3c2wa3 4 TLANCEDEPIHVPGAIQPHGALVTLRA-DGMVLAASENIQALLGFVA--------SPGSYLTQEQVGPEVLRMLEEGLTG 74 (113)
T ss_dssp CTTTGGGCCTTSCSEECTTEEEEEECT-TSBEEEEETTHHHHTSSCC--------CTTCBCCHHHHHHHHHHHHHHHHSC
T ss_pred cccccccccccCCCccCCCeEEEEEcC-CCeEEEEcCCHHHHhCCCh--------hHhcccHHHHhCHHHHHHHHhhhhc
Confidence 46789 999999999999999999997 5899999999999999976 4689999999999999999887654
Q ss_pred ccccccCceeecccCCCCCccEEEEEeeeCCEEEEEeccCCC
Q 001353 158 REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKS 199 (1093)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~f~~~~hr~~~~~~ie~Ep~~~ 199 (1093)
.. ....++.+ +.+++.|++++||+++.+|+||||...
T Consensus 75 ~~-~~~~~~~~----~~~~~~~d~~~H~~~~~lilElEP~~~ 111 (113)
T d3c2wa3 75 NG-PWSNSVET----RIGEHLFDVIGHSYKEVFYLEFEIRTA 111 (113)
T ss_dssp SS-CCCCEEEE----CCSSSCEEEEEEEETTEEEEEEEECCS
T ss_pred CC-CceeEEEe----ccCCeEEEEEEEEECCEEEEEEeeCCC
Confidence 33 23344444 347889999999999999999999864
No 19
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}
Probab=99.68 E-value=5.6e-17 Score=163.59 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCccccceeeeeHHHHH
Q 001353 861 AKIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGNMELKSEEFLLGNIL 940 (1093)
Q Consensus 861 ~k~~~la~isHELrnPLt~I~g~~~LL~~~~l~~~~~~~l~~i~~~~~rl~~lI~dLdlsrie~g~~~l~~~~v~L~~ll 940 (1093)
.+.++++.++||++|||++|.|+++|.+. ++..++++.+.....+...+...- . . ..
T Consensus 8 e~~~~l~~~~Hdl~npL~~I~g~l~L~~~----~~~~~~i~~i~~~~~~~~~~~~~~---------------~---~-~~ 64 (179)
T d1ixma_ 8 ELIHLLGHSRHDWMNKLQLIKGNLSLQKY----DRVFEMIEEMVIDAKHESKLSNLK---------------T---P-HL 64 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHHHTTT---------------C---H-HH
T ss_pred HHHHHHHHhhHhhcCHHHHHHHHHHcccc----ccchhHHHHHHHhhhccccccccc---------------c---c-cc
Confidence 35589999999999999999999987432 445566666655555555544320 0 0 00
Q ss_pred HHHHHHHHHHhccCCeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCCCCC----eEEEEEEeCCccccCCCc
Q 001353 941 DAVVSQVMVLLRDKNLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPSPDG----WVEIKVLPGLKLIKDADQ 1016 (1093)
Q Consensus 941 ~~v~~~~~~~~~~~~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g----~I~I~v~~~~~~~~~~~~ 1016 (1093)
.............+.+....+...+ .+.+++..+.|||.||+.||++|+.. .+ .|+|++...++
T Consensus 65 --~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~qvl~Nll~NAi~~~~~-~~~~~~~I~i~~~~~~~------- 132 (179)
T d1ixma_ 65 --AFDFLTFNWKTHYMTLEYEVLGEIK--DLSAYDQKLAKLMRKLFHLFDQAVSR-ESENHLTVSLQTDHPDR------- 132 (179)
T ss_dssp --HHHHHHGGGSCCSSEEEEEEESSCC--CCTTTHHHHHHHHHHHHHHHHHHBCT-TSCCEEEEEEECCCSSS-------
T ss_pred --cccccchhhhccccccccccccccc--hhhhhhhhhHHHHHHHHHHHHHHhhh-ccccchhhhhhhccccc-------
Confidence 0111223334556677777666544 47789999999999999999999764 23 56666666666
Q ss_pred eeEEEEEEecCCCCCChhhHhhhccCCCC
Q 001353 1017 FVHVQFRLTHPGEGIPSHLIEDMYNGRNQ 1045 (1093)
Q Consensus 1017 ~~~v~l~V~DnG~GIp~e~~~~IFe~F~~ 1045 (1093)
++.|+|.|||+||||+.+++||++||+
T Consensus 133 --~~~i~v~D~G~gi~~e~l~~if~~~y~ 159 (179)
T d1ixma_ 133 --QLILYLDFHGAFADPSAFDDIRQNGYE 159 (179)
T ss_dssp --SCEEEEEEESCBSCGGGCC--------
T ss_pred --EEEEEEEeCCCCcCHHHHHHHHHhccc
Confidence 899999999999999999999999998
No 20
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.54 E-value=4.3e-15 Score=141.97 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=102.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHc
Q 001353 606 KMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALL 685 (1093)
Q Consensus 606 l~q~~~eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~ 685 (1093)
+++.+++|++++++|+.+++++|++|+++|.+|+|++||++++++|||++++++|+++. +++++.+.......++..+.
T Consensus 4 l~~~e~~l~~~e~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~l~Gy~~~el~g~~~~-~~~~~~~~~~~~~~~~~~~~ 82 (130)
T d1ew0a_ 4 MLETEDVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLR-ILMPEPYRHEHDGYLQRYMA 82 (130)
T ss_dssp HHHHHHHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-GGSCTTTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCccEEEEHHHHHHhhcCCHHHhcCCccc-cccccchhHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999987 88888887777777777665
Q ss_pred CCCC----ceEEEEEEEeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 001353 686 GEED----KNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (1093)
Q Consensus 686 g~~~----~~~e~~l~~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DIT 735 (1093)
.+.. ...++.+ .++||..+|+.++..|+.+.++ .+++++++|||
T Consensus 83 ~~~~~~~~~~~e~~~----~~~dG~~~~v~~~~~~i~~~~~--~~~~~i~rDIT 130 (130)
T d1ew0a_ 83 TGEKRIIGIDRVVSG----QRKDGSTFPMKLAVGEMRSGGE--RFFTGFIRDLT 130 (130)
T ss_dssp HCCCSSTTSCEEEEE----ECTTSCEEEEEEEEEEEEETTE--EEEEEEEEECC
T ss_pred hCCCccccceeeEEE----EcCCCCEEEEEEEEEEEEECCe--EEEEEEEEECC
Confidence 4433 2233333 5789999999999999987544 45788899998
No 21
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.49 E-value=8.3e-14 Score=129.02 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=88.2
Q ss_pred cCccEEEEC---CCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeecc
Q 001353 627 ATAPIFGVD---SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQK 703 (1093)
Q Consensus 627 ~~~~I~~~D---~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~k 703 (1093)
+.+++++.| +||+|+|||+++++++||+++|++|+++. .+.+++..+...+.+...+..+.....++.+ .++
T Consensus 2 i~~~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~El~G~~~~-~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~----~~k 76 (109)
T d1n9la_ 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCR-FLQGEGTDPKEVQKIRDAIKKGEACSVRLLN----YRK 76 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE----ECT
T ss_pred ccceEEEEeCCCCCCeEEEEcHHHHHHHCcCHHHHcCCcce-eeecccCCHHHhhhhhhHhhcCCceeeeEEE----Eec
Confidence 468899999 58999999999999999999999999988 7777765555555666666555554555443 478
Q ss_pred CCcEEEEEEEEEEeecCCCCEEEEEEEEEecch
Q 001353 704 QHSVVYILVNACTSRDYKNNVKGVCFVGQDITH 736 (1093)
Q Consensus 704 dG~~~~v~v~~~pi~d~~g~v~gv~~v~~DITe 736 (1093)
||+.+|+.++..|++|.+|++.+++++++|||.
T Consensus 77 dG~~~w~~~~~~pi~d~~G~v~~~v~~~~DITa 109 (109)
T d1n9la_ 77 DGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp TSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred CCeEEEEEEEEEEEECCCCCEEEEEEEEEECCC
Confidence 999999999999999999999999999999994
No 22
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=99.40 E-value=4.5e-13 Score=140.12 Aligned_cols=108 Identities=11% Similarity=0.105 Sum_probs=82.7
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCC--CeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC------
Q 001353 974 DRIRLQLVLSDFLHCVVRHAPSPD--GWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ------ 1045 (1093)
Q Consensus 974 D~~~L~qVl~nLl~NAik~t~~~~--g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~------ 1045 (1093)
....|.|++.|||.||++|+...+ +.+.|.+....+ + ...+.|+|.|||+|||++.++++|++|++
T Consensus 19 ~~~~L~~~l~eLi~Naida~~~~~~~~~i~i~i~~~~~--~----~~~~~i~V~DnG~Gi~~~~~~~~f~~~~~s~~~~~ 92 (219)
T d2hkja3 19 PARALYQTVRELIENSLDATDVHGILPNIKITIDLIDD--A----RQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVN 92 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEET--T----TTEEEEEEEECSCCCCGGGHHHHHHCCCSSCCCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCcceEEEEEEEecC--C----CCEEEEEEEcCCCCCCHHHHHhhccceEecccccc
Confidence 345699999999999999987511 245554433221 0 11789999999999999999999999987
Q ss_pred --CCCCccchHHHHHHHHHHcCCE-EEEEeeCCe--eEEEEEEeecC
Q 001353 1046 --WTTPEGLGLKLSRKLLIMMNGR-VRYVRENSK--CYFVIDLELKT 1087 (1093)
Q Consensus 1046 --~~~GtGLGL~ivr~ive~hgG~-I~v~S~~gg--t~F~v~LPlp~ 1087 (1093)
..++.|+||++|+.+++.|+|+ +.|.|..++ +.+.+.++...
T Consensus 93 ~~~~G~~GlGl~~~~~~s~~~~g~~i~V~S~~~~~~~~~~~~~~~~~ 139 (219)
T d2hkja3 93 RQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDI 139 (219)
T ss_dssp SCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCccCHHHHHHHHHHHHcCCcEEEEEEEecCCCcEEEEeeccce
Confidence 1345899999999999999997 999998764 55666665543
No 23
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.38 E-value=3e-13 Score=126.04 Aligned_cols=106 Identities=11% Similarity=0.090 Sum_probs=93.2
Q ss_pred ccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccCCcEE
Q 001353 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708 (1093)
Q Consensus 629 ~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG~~~ 708 (1093)
+.|+..|.+|+|+++|+++++++||+.+|++|+++. ++++|++.+.+.+.+.....++.....++++ .++||+.+
T Consensus 7 ~fi~r~~~dG~i~~~N~~~~~~~G~~~~el~g~~~~-~~~~~ed~~~~~~~~~~~~~~~~~~~~e~~~----~~kdG~~~ 81 (114)
T d1p97a_ 7 TFLSRHSMDMKFTYCDDRITELIGYHPEELLGRSAY-EFYHALDSENMTKSHQNLCTKGQVVSGQYRM----LAKHGGYV 81 (114)
T ss_dssp EEEEEECTTTSCSEECTTHHHHTSSCHHHHTTSCHH-HHSCSSSHHHHHHHHHHHTTTSEEEEEEEEE----ECTTSCEE
T ss_pred EEEEEECCCCcEEEECHHHHHHcCCCcccccccccc-ccccccccccceeeeeecccccceeecceee----eeecCcce
Confidence 445557999999999999999999999999999998 8999999999999988888776555555544 47899999
Q ss_pred EEEEEEEEeecC-CCCEEEEEEEEEecchhHH
Q 001353 709 YILVNACTSRDY-KNNVKGVCFVGQDITHEKV 739 (1093)
Q Consensus 709 ~v~v~~~pi~d~-~g~v~gv~~v~~DITerK~ 739 (1093)
|+.++..|++|+ +|++.+++++.+|||++|+
T Consensus 82 wv~~~~~~~~~~~~~~~~~ii~~~~dite~k~ 113 (114)
T d1p97a_ 82 WLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 113 (114)
T ss_dssp EEEEEEEEEECTTTCSEEEEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEeCCCCCEEEEEEEEEECChhhc
Confidence 999999999987 6899999999999999985
No 24
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.37 E-value=1.3e-12 Score=120.90 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=84.8
Q ss_pred cEEEEC---CCCcEEEecHHHHHhcCCCccccCCCCcccccc-ccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccCC
Q 001353 630 PIFGVD---SSGTINGWNAKVAELTGLPASEAMGKSLIDEVV-HEESQGAVENLICRALLGEEDKNVELKLRKFELQKQH 705 (1093)
Q Consensus 630 ~I~~~D---~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv-~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG 705 (1093)
-+++.| .|+.|+|||+++++++||+.+|++|++....++ +++........+..+++++.....++.. .+++|
T Consensus 3 ~f~i~~~~~~d~~I~~~N~a~~~l~G~~~~eiiG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~----~~~~g 78 (110)
T d1bywa_ 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAF----YRKDG 78 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE----ECTTS
T ss_pred eEEEEcCCCCCCEEEEEcHHHHHHhCCCHHHhcccCcccccceeeheecccccccchhhcccccccceeee----eeccc
Confidence 356778 467899999999999999999999999862333 4555556666677777776665555443 57899
Q ss_pred cEEEEEEEEEEeecCCCCEEEEEEEEEecchh
Q 001353 706 SVVYILVNACTSRDYKNNVKGVCFVGQDITHE 737 (1093)
Q Consensus 706 ~~~~v~v~~~pi~d~~g~v~gv~~v~~DITer 737 (1093)
+.+|+.++..|++|.+|++.+++++++|||||
T Consensus 79 ~~~w~~~~~~pi~d~~G~v~~~i~~~~DITer 110 (110)
T d1bywa_ 79 SCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp CEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred ceeeeeeeEEEEECCCCCEEEEEEEEEECCCC
Confidence 99999999999999999999999999999986
No 25
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.35 E-value=1.9e-12 Score=125.17 Aligned_cols=92 Identities=22% Similarity=0.311 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHcC--CCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC---CCCCc
Q 001353 976 IRLQLVLSDFLHCVVRHA--PSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ---WTTPE 1050 (1093)
Q Consensus 976 ~~L~qVl~nLl~NAik~t--~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~---~~~Gt 1050 (1093)
..+.+++.|+++||++|+ ..+++.|.|++...++ .+.|+|.|+|+|||+ .+++|+||++ ...++
T Consensus 38 ~di~~av~E~v~Nai~ha~~~~~~~~I~i~~~~~~~---------~l~i~i~D~G~gi~~--~~~~~~~~~~~~~~~~~~ 106 (139)
T d1th8a_ 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDG---------VVHLTVRDEGVGIPD--IEEARQPLFTTKPELERS 106 (139)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETT---------EEEEEEEECSSCCSC--HHHHTCCC-------CCC
T ss_pred HHHHHHHHHhhhhhhheecCCCCCcEEEEEEEEecC---------EEEEEEccccccccc--ccccccccceecccCCCc
Confidence 357899999999999996 2235799999999888 999999999999985 5788999987 34578
Q ss_pred cchHHHHHHHHHHcCCEEEEEeeCCe-eEEEEE
Q 001353 1051 GLGLKLSRKLLIMMNGRVRYVRENSK-CYFVID 1082 (1093)
Q Consensus 1051 GLGL~ivr~ive~hgG~I~v~S~~gg-t~F~v~ 1082 (1093)
|+||+|+++ +.|+|+|+|.+|+ |+|+++
T Consensus 107 GlGL~iv~~----l~d~i~i~s~~~~Gt~v~i~ 135 (139)
T d1th8a_ 107 GMGFTIMEN----FMDEVIVESEVNKGTTVYLK 135 (139)
T ss_dssp SCHHHHHHH----HSSEEEEEEETTTEEEEEEE
T ss_pred hHHHHHHHH----hCCEEEEEEcCCCcEEEEEE
Confidence 999998866 4589999999974 888775
No 26
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=99.34 E-value=2.2e-12 Score=117.87 Aligned_cols=100 Identities=19% Similarity=0.148 Sum_probs=88.9
Q ss_pred cEEEEC---CCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccCCc
Q 001353 630 PIFGVD---SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHS 706 (1093)
Q Consensus 630 ~I~~~D---~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG~ 706 (1093)
.++++| +||+|+|+|+++++++||+.+|++|+++. ++.+++..+.....+..+++++.....++.+ .+++|+
T Consensus 2 ~fvi~d~~~pd~~I~y~N~a~~~~~G~s~~e~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~~~dg~ 76 (104)
T d1jnua_ 2 SFVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCR-FLQGRGTDRKAVQLIRDAVKEQRDVTVQVLN----YTKGGR 76 (104)
T ss_dssp EEEEECTTSTTCCEEEECHHHHHHHTCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHHTCCEEEEEEE----ECTTSC
T ss_pred eEEEEcCCCCCCEEEEEcHHHHHHHCcCHHHHCCccce-eccccccchHHHhhhhhhhhcCceeEeEEEE----Eecccc
Confidence 467888 57999999999999999999999999998 8888888888888888888877766666554 578999
Q ss_pred EEEEEEEEEEeecCCCCEEEEEEEEEec
Q 001353 707 VVYILVNACTSRDYKNNVKGVCFVGQDI 734 (1093)
Q Consensus 707 ~~~v~v~~~pi~d~~g~v~gv~~v~~DI 734 (1093)
.+|+.++..|++|.+|++.|++++++||
T Consensus 77 ~~~~~~~~~pi~d~~G~v~~~i~i~~DI 104 (104)
T d1jnua_ 77 AFWNLFHLQVMRDENGDVQYFIGVQQEM 104 (104)
T ss_dssp EEEEEEEEEEECTTTSSCCEEEEEEEEC
T ss_pred eEEEEEEEEEEECCCCCEEEEEEEEEcC
Confidence 9999999999999999999999999998
No 27
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=99.33 E-value=2.8e-12 Score=118.36 Aligned_cols=111 Identities=11% Similarity=0.065 Sum_probs=84.8
Q ss_pred HHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEe
Q 001353 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKF 699 (1093)
Q Consensus 620 l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~ 699 (1093)
|.+++++++++|+++|.+|+|+++|+++++++||+.+|++|++.. .++++...+.....+...+...............
T Consensus 3 ~~~~~e~~~d~i~~~d~~g~i~~~N~~~~~l~Gy~~~e~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 81 (113)
T d1v9ya_ 3 FFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNID-MLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQ 81 (113)
T ss_dssp HHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGG-GGSCGGGTTTHHHHHHHHHC----------CEEE
T ss_pred HHHHHHcCcCcEEEEeCCCCEEEEchhHhhhhccchhhhcCccee-cccccccccccccccccccccccccccccceeee
Confidence 678999999999999999999999999999999999999999998 7777766666666666666544433333333444
Q ss_pred eeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEe
Q 001353 700 ELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQD 733 (1093)
Q Consensus 700 ~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~D 733 (1093)
..+++|+.+|+.++..|+.+.++. .++++++|
T Consensus 82 ~~~~dG~~~~v~~~~~~i~~~~~~--~~~~v~rD 113 (113)
T d1v9ya_ 82 LEKKDGSKIWTRFALSKVSAEGKV--YYLALVRD 113 (113)
T ss_dssp EECTTSCEEEEEEEEEEEEETTEE--EEEEEEEC
T ss_pred eccccceeEEEEEEEEEEEECCeE--EEEEEEEC
Confidence 568999999999999999986554 36777787
No 28
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}
Probab=99.33 E-value=5.6e-12 Score=127.78 Aligned_cols=119 Identities=12% Similarity=0.127 Sum_probs=82.5
Q ss_pred CeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCCC-----------CCCeEEEEEEeCCccccCCCceeEEEEE
Q 001353 955 NLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAPS-----------PDGWVEIKVLPGLKLIKDADQFVHVQFR 1023 (1093)
Q Consensus 955 ~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~~-----------~~g~I~I~v~~~~~~~~~~~~~~~v~l~ 1023 (1093)
.+.+.+..... .....+...+.+.+.+++.|++++... ......+....... .+.+.
T Consensus 28 ~i~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~~~ 95 (189)
T d1i58a_ 28 EVNFIMRGEDT---ELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGN---------NVVIE 95 (189)
T ss_dssp CEEEEEECTTC---EEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETT---------EEEEE
T ss_pred CeEEEEecccc---hhhhhHHHHHHHHHHHHHhhhhhhhccccccceeeccccccceeEeeeccCC---------eEEEE
Confidence 35555543331 123345778889999999999875321 01111112222222 34444
Q ss_pred EecC------------------------CCCCChhhHhhhccCCCC------CCCCccchHHHHHHHHHHcCCEEEEEee
Q 001353 1024 LTHP------------------------GEGIPSHLIEDMYNGRNQ------WTTPEGLGLKLSRKLLIMMNGRVRYVRE 1073 (1093)
Q Consensus 1024 V~Dn------------------------G~GIp~e~~~~IFe~F~~------~~~GtGLGL~ivr~ive~hgG~I~v~S~ 1073 (1093)
..|+ |.|++++..+++|++||+ ..+|+||||+|||+||+.|||+|+++|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~G~GLGLai~k~ive~hgG~I~v~S~ 175 (189)
T d1i58a_ 96 VEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVGMDVVKNVVESLNGSISIESE 175 (189)
T ss_dssp EEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHHHHGGGTCCCHHHHHHHHHHHTTCEEEEEEE
T ss_pred EcCCccccchhhhhceeccceeeeecccccchhhhhhhhhhccccccccccccCCcCccCHHHHHHHHHHCCCEEEEEec
Confidence 4444 455557888999999987 5779999999999999999999999999
Q ss_pred CC-eeEEEEEEee
Q 001353 1074 NS-KCYFVIDLEL 1085 (1093)
Q Consensus 1074 ~g-gt~F~v~LPl 1085 (1093)
+| ||+|+|+||+
T Consensus 176 ~g~GT~f~i~lPl 188 (189)
T d1i58a_ 176 KDKGTKVTIRLPL 188 (189)
T ss_dssp TTTEEEEEEEEEC
T ss_pred CCCCEEEEEEEeC
Confidence 98 5999999997
No 29
>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]}
Probab=99.32 E-value=2.2e-12 Score=122.65 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=90.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc--------------------
Q 001353 735 THEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-------------------- 794 (1093)
Q Consensus 735 TerK~aEe~L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG-------------------- 794 (1093)
|+.++++++|++++++|+.+++++++ +|+++|.+|+|++||+++++++||++++++|
T Consensus 2 s~l~~~e~~l~~~e~~~~~i~~~~~~---~i~~~d~~g~i~~~N~~~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~ 78 (130)
T d1ew0a_ 2 SHMLETEDVVRARDAHLRSILDTVPD---ATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQ 78 (130)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHTTCSS---EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTGGGHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCC---eEEEEeCCccEEEEHHHHHHhhcCCHHHhcCCccccccccchhHHHHHHHH
Confidence 67899999999999999999999998 8999999999999999999999999999998
Q ss_pred ------ccCCCccceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeecc
Q 001353 795 ------ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILV 842 (1093)
Q Consensus 795 ------~~~~~~~~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DIT 842 (1093)
.........++.+.++||+.+|+.++.+|+.+.++. .++++++|||
T Consensus 79 ~~~~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~~i~~~~~~--~~~~i~rDIT 130 (130)
T d1ew0a_ 79 RYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGGER--FFTGFIRDLT 130 (130)
T ss_dssp HHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEETTEE--EEEEEEEECC
T ss_pred HHHHhCCCccccceeeEEEEcCCCCEEEEEEEEEEEEECCeE--EEEEEEEECC
Confidence 111222456788899999999999999999876554 3788999998
No 30
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=99.29 E-value=3.4e-12 Score=116.18 Aligned_cols=106 Identities=12% Similarity=0.130 Sum_probs=83.8
Q ss_pred ccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccCCcEE
Q 001353 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708 (1093)
Q Consensus 629 ~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG~~~ 708 (1093)
+||+++|.+|+|++||+++++++||+.+|++|+++. .++++.+.......+...+.................++||..+
T Consensus 1 dgi~~~D~~G~I~~~N~a~~~l~Gy~~~el~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 79 (106)
T d1xj3a1 1 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVN-ILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGTTF 79 (106)
T ss_dssp CCEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-GGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSCEE
T ss_pred CEEEEECCCCcEEEEcHHHHHHhhhchHhhcCCCcc-cccccccccchhhhhhhhhhhcccccccccceeeeeeccceEE
Confidence 689999999999999999999999999999999998 8888888777777666655444332211112223357899999
Q ss_pred EEEEEEEEeecCCCCEEEEEEEEEecchh
Q 001353 709 YILVNACTSRDYKNNVKGVCFVGQDITHE 737 (1093)
Q Consensus 709 ~v~v~~~pi~d~~g~v~gv~~v~~DITer 737 (1093)
|+.++..|+.+.++ .+++++++||||.
T Consensus 80 ~v~~~~~~~~~~~~--~~~~~~~~DITE~ 106 (106)
T d1xj3a1 80 PMHLSIGEMQSGGE--PYFTGFVRDLTEH 106 (106)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEECHHH
T ss_pred EEEEEEEEEEECCe--EEEEEEEEeCCCC
Confidence 99999999998554 4688899999973
No 31
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.22 E-value=3.4e-11 Score=113.65 Aligned_cols=99 Identities=11% Similarity=0.178 Sum_probs=76.5
Q ss_pred eeeeHHHHHHHHHHHHHHHhccC-------CeEEEeecCCCccceEEEecHHHHHHHHHHHHHHHHHcCC-------CCC
Q 001353 932 EEFLLGNILDAVVSQVMVLLRDK-------NLHLLHDIPEEIKALSLNGDRIRLQLVLSDFLHCVVRHAP-------SPD 997 (1093)
Q Consensus 932 ~~v~L~~ll~~v~~~~~~~~~~~-------~i~l~~~~~~~lp~~~v~~D~~~L~qVl~nLl~NAik~t~-------~~~ 997 (1093)
..+++.++++++++..+...... .+.......++.+ +.+.+|+.+|.|||.||+.||++|++ ...
T Consensus 13 ~~~~l~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~d~~~l~qvl~NLl~NAi~~~~~~~~~~~~~~ 91 (125)
T d1y8oa2 13 PTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKP-IQVVYVPSHLFHMLFELFKNSMRATVELYEDRKEGY 91 (125)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSC-CEEEECHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhhHhhhhhheeeeCCCCC-eEEeeCHHHHHHHHHHHHHHHHHhhhccccccCCCc
Confidence 45789999999888776554322 1112222233333 57999999999999999999999842 225
Q ss_pred CeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhc
Q 001353 998 GWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMY 1040 (1093)
Q Consensus 998 g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IF 1040 (1093)
+.|.|++....+ ++.|+|+|||+|||++.+++||
T Consensus 92 ~~I~i~~~~~~~---------~v~i~V~D~G~GI~~e~~~~IF 125 (125)
T d1y8oa2 92 PAVKTLVTLGKE---------DLSIKISDLGGGVPLRKIDRLF 125 (125)
T ss_dssp CCEEEEEEECSS---------EEEEEEEECSCCCCHHHHGGGG
T ss_pred eeEEEEeecCCC---------EEEEEEEEeCCCcCHHHHcccC
Confidence 689999888888 9999999999999999999998
No 32
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=99.21 E-value=1.5e-11 Score=113.38 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=73.1
Q ss_pred ceEEec---CCCcEeechhhhHHHhCCCcchhcc----------------------ccCCCccceeeEEEccCCcEEEEE
Q 001353 764 PIFASD---ENACCSEWNAAMEKVTGWMRHEVIG----------------------ITGQGTENFPFGFFNRQGQFVEVA 818 (1093)
Q Consensus 764 ~I~~~D---~~g~i~~~N~a~~~l~G~~~eEliG----------------------~~~~~~~~~e~~~~~kdG~~~~v~ 818 (1093)
++++.| ++|+|+++|+++++++||+++|++| +..+..+..++.+++|||+.+|+.
T Consensus 5 ~~vi~Da~~pdg~Ii~vN~a~~~~~Gy~~~El~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~kdG~~~w~~ 84 (109)
T d1n9la_ 5 TFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFWNL 84 (109)
T ss_dssp EEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEE
T ss_pred eEEEEeCCCCCCeEEEEcHHHHHHHCcCHHHHcCCcceeeecccCCHHHhhhhhhHhhcCCceeeeEEEEecCCeEEEEE
Confidence 788898 5899999999999999999999999 334456678889999999999999
Q ss_pred EEEeEeecCCCcEEEEEEEEeeccc
Q 001353 819 LTASRRTDAEGKVIGCFCFMQILVP 843 (1093)
Q Consensus 819 ~~~~~i~d~~G~v~g~i~~~~DITe 843 (1093)
+++.|++|++|++.+++++++|||.
T Consensus 85 ~~~~pi~d~~G~v~~~v~~~~DITa 109 (109)
T d1n9la_ 85 LTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECCC
T ss_pred EEEEEEECCCCCEEEEEEEEEECCC
Confidence 9999999999999999999999984
No 33
>d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.12 E-value=7.8e-11 Score=108.55 Aligned_cols=80 Identities=16% Similarity=0.335 Sum_probs=71.7
Q ss_pred eEEec---CCCcEeechhhhHHHhCCCcchhcc------------------------ccCCCccceeeEEEccCCcEEEE
Q 001353 765 IFASD---ENACCSEWNAAMEKVTGWMRHEVIG------------------------ITGQGTENFPFGFFNRQGQFVEV 817 (1093)
Q Consensus 765 I~~~D---~~g~i~~~N~a~~~l~G~~~eEliG------------------------~~~~~~~~~e~~~~~kdG~~~~v 817 (1093)
.++.| +|+.|+++|+++++++||+++|++| +..+.....++.+.+++|+.+|+
T Consensus 4 f~i~~~~~~d~~I~~~N~a~~~l~G~~~~eiiG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~g~~~w~ 83 (110)
T d1bywa_ 4 FIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLC 83 (110)
T ss_dssp EEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEE
T ss_pred EEEEcCCCCCCEEEEEcHHHHHHhCCCHHHhcccCcccccceeeheecccccccchhhcccccccceeeeeecccceeee
Confidence 45567 5678999999999999999999999 34555667888999999999999
Q ss_pred EEEEeEeecCCCcEEEEEEEEeecccC
Q 001353 818 ALTASRRTDAEGKVIGCFCFMQILVPD 844 (1093)
Q Consensus 818 ~~~~~~i~d~~G~v~g~i~~~~DITe~ 844 (1093)
.++.+|++|++|++++++++++|||||
T Consensus 84 ~~~~~pi~d~~G~v~~~i~~~~DITer 110 (110)
T d1bywa_ 84 LVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred eeeEEEEECCCCCEEEEEEEEEECCCC
Confidence 999999999999999999999999986
No 34
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
Probab=99.11 E-value=3.1e-11 Score=107.01 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=69.8
Q ss_pred EeecccCcHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHH
Q 001353 838 MQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESS---SISENQRQYLETSDACERQIMTII 914 (1093)
Q Consensus 838 ~~DITe~k~~e~elq~~~e~~~~~k~~~la~isHELrnPLt~I~g~~~LL~~~---~l~~~~~~~l~~i~~~~~rl~~lI 914 (1093)
++|||++++.+ ..++.+..|.+|++.+||||||||++|.|++++|.+. ...++++++++.+..++.+|..+|
T Consensus 1 l~dit~~r~~e-----~l~~~~~~k~~f~~~vsHeLRtPL~~I~~~~~~L~~~~~~~~~~~~~~~l~~i~~~~~rl~~li 75 (89)
T d2c2aa1 1 MENVTESKELE-----RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLL 75 (89)
T ss_dssp CCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHH-----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788766543 2345566788999999999999999999999999763 345667899999999999999999
Q ss_pred hc-ccccccccCc
Q 001353 915 DG-MDLRCIEEGN 926 (1093)
Q Consensus 915 ~d-Ldlsrie~g~ 926 (1093)
++ |+|+++++|.
T Consensus 76 ~~lLd~srle~g~ 88 (89)
T d2c2aa1 76 NELLDFSRLERKS 88 (89)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCC
Confidence 99 7999999876
No 35
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=99.02 E-value=2.1e-10 Score=104.33 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=70.5
Q ss_pred eEEec---CCCcEeechhhhHHHhCCCcchhcc----------------------ccCCCccceeeEEEccCCcEEEEEE
Q 001353 765 IFASD---ENACCSEWNAAMEKVTGWMRHEVIG----------------------ITGQGTENFPFGFFNRQGQFVEVAL 819 (1093)
Q Consensus 765 I~~~D---~~g~i~~~N~a~~~l~G~~~eEliG----------------------~~~~~~~~~e~~~~~kdG~~~~v~~ 819 (1093)
+++.| ++|+|+++|+++++++||+.+|++| ......+..+++++++||+.+|+.+
T Consensus 3 fvi~d~~~pd~~I~y~N~a~~~~~G~s~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~~ 82 (104)
T d1jnua_ 3 FVITDPRLPDNPIIFASDRFLELTEYTREEVLGNNCRFLQGRGTDRKAVQLIRDAVKEQRDVTVQVLNYTKGGRAFWNLF 82 (104)
T ss_dssp EEEECTTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEE
T ss_pred EEEEcCCCCCCEEEEEcHHHHHHHCcCHHHHCCccceeccccccchHHHhhhhhhhhcCceeEeEEEEEecccceEEEEE
Confidence 56777 5899999999999999999999999 4455667889999999999999999
Q ss_pred EEeEeecCCCcEEEEEEEEeec
Q 001353 820 TASRRTDAEGKVIGCFCFMQIL 841 (1093)
Q Consensus 820 ~~~~i~d~~G~v~g~i~~~~DI 841 (1093)
++.|++|++|++++++++.+||
T Consensus 83 ~~~pi~d~~G~v~~~i~i~~DI 104 (104)
T d1jnua_ 83 HLQVMRDENGDVQYFIGVQQEM 104 (104)
T ss_dssp EEEEECTTTSSCCEEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEEEEcC
Confidence 9999999999999999999997
No 36
>d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.02 E-value=2.4e-10 Score=105.77 Aligned_cols=82 Identities=10% Similarity=0.148 Sum_probs=74.9
Q ss_pred eEEecCCCcEeechhhhHHHhCCCcchhcc----------------------ccCCCccceeeEEEccCCcEEEEEEEEe
Q 001353 765 IFASDENACCSEWNAAMEKVTGWMRHEVIG----------------------ITGQGTENFPFGFFNRQGQFVEVALTAS 822 (1093)
Q Consensus 765 I~~~D~~g~i~~~N~a~~~l~G~~~eEliG----------------------~~~~~~~~~e~~~~~kdG~~~~v~~~~~ 822 (1093)
|+..|.+|+++++|+++++++||+++|++| ..+......++++.++||+.+|+..+..
T Consensus 9 i~r~~~dG~i~~~N~~~~~~~G~~~~el~g~~~~~~~~~ed~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~wv~~~~~ 88 (114)
T d1p97a_ 9 LSRHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYVWLETQGT 88 (114)
T ss_dssp EEEECTTTSCSEECTTHHHHTSSCHHHHTTSCHHHHSCSSSHHHHHHHHHHHTTTSEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEECCCCcEEEECHHHHHHcCCCccccccccccccccccccccceeeeeecccccceeecceeeeeecCcceEEEEEEE
Confidence 455799999999999999999999999999 5566667889999999999999999999
Q ss_pred EeecC-CCcEEEEEEEEeecccCcH
Q 001353 823 RRTDA-EGKVIGCFCFMQILVPDLQ 846 (1093)
Q Consensus 823 ~i~d~-~G~v~g~i~~~~DITe~k~ 846 (1093)
|++|+ +|++.+++|+.+||||+|+
T Consensus 89 ~~~~~~~~~~~~ii~~~~dite~k~ 113 (114)
T d1p97a_ 89 VIYNPRNLQPQCIMCVNYVLSEIEK 113 (114)
T ss_dssp EEECTTTCSEEEEEEEEEEEEEEEC
T ss_pred EEEeCCCCCEEEEEEEEEECChhhc
Confidence 99996 6999999999999999875
No 37
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=98.98 E-value=6.4e-10 Score=105.01 Aligned_cols=107 Identities=11% Similarity=0.095 Sum_probs=81.3
Q ss_pred HHHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCcccccc-ccccHHHHHHHHHHHHcCCCCceEEEEEE
Q 001353 619 EMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVV-HEESQGAVENLICRALLGEEDKNVELKLR 697 (1093)
Q Consensus 619 ~l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv-~~~~~~~~~~~l~~~l~g~~~~~~e~~l~ 697 (1093)
.+..+++++|+||+++|.+|+|++||+++++++|+++++++|+++. +++ +++..+.+...+..++.++.....+. .
T Consensus 18 ~~d~~ld~~p~gi~~lD~~G~i~~~N~a~~~l~G~~~~e~iG~~~~-~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~-~- 94 (125)
T d1nwza_ 18 MDDGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFF-KDVAPCTDSPEFYGKFKEGVASGNLNTMFE-Y- 94 (125)
T ss_dssp CCHHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCC-CCCCGGGCSTTTHHHHHHHHHHTCCEEEEE-E-
T ss_pred HHHHHHhCCCccEEEEeCCCCEEEEcHHHHHhhccchHhhcCCCHH-HccCchhhhhheeeeceeeeecCCcceEEE-E-
Confidence 3467999999999999999999999999999999999999999998 555 44555666667777776555422221 1
Q ss_pred EeeeccCCcEEEEEEEEEEeecCCCCEEEEEEEEEec
Q 001353 698 KFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDI 734 (1093)
Q Consensus 698 ~~~~~kdG~~~~v~v~~~pi~d~~g~v~gv~~v~~DI 734 (1093)
..+++|.++|+.++..+..+ |. .+...++||
T Consensus 95 --~~~~~G~~~~v~v~l~~~~~--g~--~~~v~V~di 125 (125)
T d1nwza_ 95 --TFDYQMTPTKVKVHMKKALS--GD--SYWVFVKRV 125 (125)
T ss_dssp --EECTTSCCEEEEEEEEECSS--SS--EEEEEEEEC
T ss_pred --EeccCCcEEEEEEEEEEecC--CC--EEEEEEEEC
Confidence 24679999999999877655 33 234566776
No 38
>d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]}
Probab=98.97 E-value=6.6e-10 Score=100.56 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=68.6
Q ss_pred CceEEecCCCcEeechhhhHHHhCCCcchhcc--------------------------ccCCCccceeeEEEccCCcEEE
Q 001353 763 PPIFASDENACCSEWNAAMEKVTGWMRHEVIG--------------------------ITGQGTENFPFGFFNRQGQFVE 816 (1093)
Q Consensus 763 ~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG--------------------------~~~~~~~~~e~~~~~kdG~~~~ 816 (1093)
+||+++|.+|+|++||+++++++||+++|++| .........++.+.++||+.+|
T Consensus 1 dgi~~~D~~G~I~~~N~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~ 80 (106)
T d1xj3a1 1 DAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDGTTFP 80 (106)
T ss_dssp CCEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTSCEEE
T ss_pred CEEEEECCCCcEEEEcHHHHHHhhhchHhhcCCCcccccccccccchhhhhhhhhhhcccccccccceeeeeeccceEEE
Confidence 38999999999999999999999999999999 2223345677899999999999
Q ss_pred EEEEEeEeecCCCcEEEEEEEEeeccc
Q 001353 817 VALTASRRTDAEGKVIGCFCFMQILVP 843 (1093)
Q Consensus 817 v~~~~~~i~d~~G~v~g~i~~~~DITe 843 (1093)
+.++++|+.+.++. +++++++||||
T Consensus 81 v~~~~~~~~~~~~~--~~~~~~~DITE 105 (106)
T d1xj3a1 81 MHLSIGEMQSGGEP--YFTGFVRDLTE 105 (106)
T ss_dssp EEEEEEEEEETTEE--EEEEEEEECHH
T ss_pred EEEEEEEEEECCeE--EEEEEEEeCCC
Confidence 99999999987655 47899999996
No 39
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=98.97 E-value=3.7e-10 Score=104.17 Aligned_cols=95 Identities=15% Similarity=0.172 Sum_probs=76.1
Q ss_pred HHHHHHhcCccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCC-ceEEEEEEE
Q 001353 620 MVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEED-KNVELKLRK 698 (1093)
Q Consensus 620 l~~lie~~~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~-~~~e~~l~~ 698 (1093)
+.++++++|+||+++|.+|+|++||++++++|||+++|++|+++++.+.++...+.+...+.+.+..+.. ...++.
T Consensus 5 ~~A~ld~~p~gvi~~D~~G~I~~~N~aa~~~~G~~~eellG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~--- 81 (110)
T d1mzua_ 5 GTAEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFV--- 81 (110)
T ss_dssp -CTTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEE---
T ss_pred HHHHHhCCCcEEEEEcCCCCEEEeHHHHHHHHcCCHHHHcCCCHHHhcCChhhhHHHHHHHHHHHhccccCcceEEE---
Confidence 3568999999999999999999999999999999999999999983455556667777778777776654 223333
Q ss_pred eeeccCCcEEEEEEEEEEeec
Q 001353 699 FELQKQHSVVYILVNACTSRD 719 (1093)
Q Consensus 699 ~~~~kdG~~~~v~v~~~pi~d 719 (1093)
.+++|..+++.++..+..+
T Consensus 82 --l~~~G~~~~v~v~~~~~~~ 100 (110)
T d1mzua_ 82 --FDFQMAPVRVQIRMQNAGV 100 (110)
T ss_dssp --EECSSCEEEEEEEEEECSS
T ss_pred --EecCCceEEEEEEEEEecC
Confidence 3569999999999887654
No 40
>d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]}
Probab=98.95 E-value=1.1e-09 Score=100.31 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=69.9
Q ss_pred HHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc--------------------------ccCCCcccee
Q 001353 751 YEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG--------------------------ITGQGTENFP 804 (1093)
Q Consensus 751 lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG--------------------------~~~~~~~~~e 804 (1093)
|.+++++.++ ||+++|.+|+|+++|+++++++||+++|++| .........+
T Consensus 3 ~~~~~e~~~d---~i~~~d~~g~i~~~N~~~~~l~Gy~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 79 (113)
T d1v9ya_ 3 FFPALEQNMM---GAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 79 (113)
T ss_dssp HHHHHHTCSS---EEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------CE
T ss_pred HHHHHHcCcC---cEEEEeCCCCEEEEchhHhhhhccchhhhcCcceeccccccccccccccccccccccccccccccee
Confidence 6778899888 9999999999999999999999999999999 1223345667
Q ss_pred eEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEee
Q 001353 805 FGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQI 840 (1093)
Q Consensus 805 ~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~D 840 (1093)
+.+.++||+.+|+.+++.|+.+.+|.. ++++++|
T Consensus 80 ~~~~~~dG~~~~v~~~~~~i~~~~~~~--~~~v~rD 113 (113)
T d1v9ya_ 80 LQLEKKDGSKIWTRFALSKVSAEGKVY--YLALVRD 113 (113)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTEEE--EEEEEEC
T ss_pred eeeccccceeEEEEEEEEEEEECCeEE--EEEEEEC
Confidence 888999999999999999999876654 6788877
No 41
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.86 E-value=4.5e-10 Score=104.11 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=84.8
Q ss_pred HhcCccEEEECC-CCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeecc
Q 001353 625 ETATAPIFGVDS-SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQK 703 (1093)
Q Consensus 625 e~~~~~I~~~D~-dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~k 703 (1093)
+.+.++|+++|. +|+|+++|++++++|||+.++++|+++. +++++++.......+...+.++..............++
T Consensus 5 ~~~n~AI~~id~~~G~I~~~N~a~~~l~Gy~~~el~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 83 (114)
T d1ll8a_ 5 PEFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLT-QFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISR 83 (114)
T ss_dssp TTTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGG-GGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCT
T ss_pred hhcCcEEEEEECCCCEEEEECHHHHHhhcCCHHHHcCCCee-eecCcccHHHHHHHHHHHHhcCCCccceeeEEEEEEcc
Confidence 456789999995 6999999999999999999999999999 99999888888777777776654322211111223578
Q ss_pred CCcEEEEEEEEEEeecCCCCEEEEEEEEEecc
Q 001353 704 QHSVVYILVNACTSRDYKNNVKGVCFVGQDIT 735 (1093)
Q Consensus 704 dG~~~~v~v~~~pi~d~~g~v~gv~~v~~DIT 735 (1093)
+|+.+|+.++..++.. +|+.. ++++++||+
T Consensus 84 ~G~~~pvevs~~~i~~-~~~~~-~l~vi~dV~ 113 (114)
T d1ll8a_ 84 SGEKIPVSVWMKRMRQ-ERRLC-CVVVLEPVE 113 (114)
T ss_dssp TCCCEEEECCEECCBS-SSSBE-EEEEEEECC
T ss_pred CCcEEEEEEEEEEEEE-CCeEE-EEEEEEECc
Confidence 9999999999999875 44443 678889994
No 42
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.74 E-value=1.2e-07 Score=91.55 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCeEEEecCCCCC
Q 001353 230 DIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIP 309 (1093)
Q Consensus 230 ~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~d~~~~~ 309 (1093)
|++++++++++++++++|+||+.||-|++|+.-.+++ +..+..+...+.++|...- -....+..++..++.|+...+
T Consensus 1 Dld~ll~~i~~~~~~~~~ad~~~i~l~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~ 77 (154)
T d1mc0a2 1 DVSVLLQEIITEARNLSNAEICSVFLLDQNELVAKVF-DGGVVDDESYEIRIPADQG--IAGHVATTGQILNIPDAYAHP 77 (154)
T ss_dssp CHHHHHHHHHHHHHHHHTEEEEEEEEECSSSEEEEEE-TTEECCCSTTCCEECTTSH--HHHHHHHHCCCEEESCSTTCT
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEEECCccEEEEE-EeccccccccceeecCCcc--chhheeccCcEEEEEeccccc
Confidence 6899999999999999999999999999876544444 3334445556677776542 223345556666777777666
Q ss_pred cccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEee-cCCCCCCCchHHHHHHHH
Q 001353 310 VMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCH-HTSPRYIPFPLRYACEFL 388 (1093)
Q Consensus 310 ~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h-~~~p~~~~~~~r~~~~~l 388 (1093)
.+ +..............+++|++..+ ++++|.+.+. .+.++.|+..+..+++.+
T Consensus 78 ~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~f~~~d~~ll~~l 132 (154)
T d1mc0a2 78 LF----------------------YRGVDDSTGFRTRNILCFPIKNEN---QEVIGVAELVNKINGPWFSKFDEDLATAF 132 (154)
T ss_dssp TC----------------------CCTTHHHHTCCCCCEEEEEEECTT---SCEEEEEEEEEETTSSSCCHHHHHHHHHH
T ss_pred cc----------------------cchhhhhhcccceeEEEEeccccc---ceeeEEEEeecccccccccHHHHHHHHHH
Confidence 54 222333455566677888887543 3777777655 557999999999999999
Q ss_pred HHHHHHHHHHH
Q 001353 389 VQAFSLQLYME 399 (1093)
Q Consensus 389 ~~~~~~~l~~~ 399 (1093)
|.++|++|+..
T Consensus 133 a~q~aiAi~na 143 (154)
T d1mc0a2 133 SIYCGISIAHS 143 (154)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999653
No 43
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.44 E-value=7.9e-08 Score=87.93 Aligned_cols=88 Identities=7% Similarity=0.116 Sum_probs=69.4
Q ss_pred EEEECCCCcEEEecHHHHHhcCCCc-cccCCCCccccccccccHH--HHHHHHHHHHcCCCCceEEEEEEEeeeccCCcE
Q 001353 631 IFGVDSSGTINGWNAKVAELTGLPA-SEAMGKSLIDEVVHEESQG--AVENLICRALLGEEDKNVELKLRKFELQKQHSV 707 (1093)
Q Consensus 631 I~~~D~dG~I~~~N~~~~~llG~~~-eeliG~~~~~~lv~~~~~~--~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG~~ 707 (1093)
+.-.|.+|+++++|+++.+++||.+ +|++|+++. +++||+|.+ ......+.++..+.....++++ .+|||+.
T Consensus 5 ~trh~~~g~~~~vd~~~~~~~gy~~~eelig~s~~-~f~HPeD~~~~~~~~~~~~~~~~g~~~~~~yR~----~~kdG~~ 79 (109)
T d1oj5a_ 5 MTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIY-AFFQPQGREPSYARQLFQEVMTRGTASSPSYRF----ILNDGTM 79 (109)
T ss_dssp EEEECTTCCEEEEECHHHHTTCCSCHHHHHHHHHH-HHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEE----ECTTSCE
T ss_pred EEEECCCceEEEECHHHhhHhhcCCHHHHcCCcHH-HeECcccchHHHhhHHHHHHHhhcccchhhhhh----hhccCcE
Confidence 4456999999999999999999986 899999999 999999865 3344556666666655556655 5789999
Q ss_pred EEEEEEEEEeecCCCC
Q 001353 708 VYILVNACTSRDYKNN 723 (1093)
Q Consensus 708 ~~v~v~~~pi~d~~g~ 723 (1093)
+|+..++.+++|..|+
T Consensus 80 vWv~t~~~~~~~~~~~ 95 (109)
T d1oj5a_ 80 LSAHTRCKLCYPQSPD 95 (109)
T ss_dssp EEEEEEEEEECC----
T ss_pred EEEEEEEEEEECCCCC
Confidence 9999999999986544
No 44
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]}
Probab=98.42 E-value=1e-07 Score=78.73 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc-ccccc
Q 001353 862 KIKELAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDG-MDLRC 921 (1093)
Q Consensus 862 k~~~la~isHELrnPLt~I~g~~~LL~~~~l~~~~~~~l~~i~~~~~rl~~lI~d-Ldlsr 921 (1093)
+.+|++.+||||||||++|.++++++.+ +..++++.+...+++|.++|++ |+|+|
T Consensus 12 ~~~f~~~vsHeLRTPLt~i~~~~e~l~~-----~~~~~~~~i~~~~~rm~~li~dlL~~aR 67 (67)
T d1joya_ 12 RTLLMAGVSHDLRTPLTRIRLATEMMSE-----QDGYLAESINKDIEECNAIIEQFIDYLR 67 (67)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHH-----HHTHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhhh-----ccHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5689999999999999999999999864 3356788899999999999999 68875
No 45
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.31 E-value=4.1e-06 Score=83.81 Aligned_cols=144 Identities=15% Similarity=0.052 Sum_probs=103.9
Q ss_pred hcCCCCCHHHHHHHHHHHHHhhhCCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCC-CchHHHHHhHhcCCeEEE
Q 001353 224 QALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPAN-DIPQAARFLFKQNRVRMI 302 (1093)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~vr~~~~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~-dip~~~r~l~~~~~~r~i 302 (1093)
.++...|++.+++.+++.+.+++++||..||-+++|.+ +.++....+ .+..-+..||-+ .+. ...+..++.-.+
T Consensus 13 ~~l~~ld~~~l~~~il~~~~~~~~ad~~~i~L~d~~~~-~l~~~~~~~-~~~~~~~~~~~~~g~~---~~v~~~~~~~~i 87 (187)
T d1mc0a1 13 GELFDLDATSLQLKVLQYLQQETQATHCCLLLVSEDNL-QLSCKVIGD-KVLGEEVSFPLTMGRL---GQVVEDKQCIQL 87 (187)
T ss_dssp HTCCCSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSC-EEEEEEETT-EEEEEEEEEESSSSSH---HHHHHHCCCEEG
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhCCCEEEEEEEECCCc-eEEEEEecc-CCcccceeecCCccHH---HHHHHhhhhhhh
Confidence 33335699999999999999999999999999998754 444433222 222333455543 233 455777888888
Q ss_pred ecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEee-cCCCCCCCchH
Q 001353 303 CDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCH-HTSPRYIPFPL 381 (1093)
Q Consensus 303 ~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h-~~~p~~~~~~~ 381 (1093)
.|+...|.+ -..+..+.+.++-|.+||+... ++++.|.|.+. +..++.|+...
T Consensus 88 ~d~~~d~~~------------------------~~~~~~~~~~~s~l~vPl~~~~--~~~~iGvl~~~~~~~~~~fs~~d 141 (187)
T d1mc0a1 88 KDLTSDDVQ------------------------QLQNMLGCELQAMLCVPVISRA--TDQVVALACAFNKLGGDFFTDED 141 (187)
T ss_dssp GGSCHHHHH------------------------HHHHHHCSCCCCEEEEEEECTT--TCSEEEEEEEEEESSCSSCCSHH
T ss_pred hcccccccc------------------------ccchhhhhhHHHHHhhhhhccc--cccceEEEEEEcccccchhhhHH
Confidence 887654332 1245667888999999999531 23999999655 45689999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001353 382 RYACEFLVQAFSLQLYM 398 (1093)
Q Consensus 382 r~~~~~l~~~~~~~l~~ 398 (1093)
..+++.++.++|..|..
T Consensus 142 ~~~l~~~a~~~a~ai~n 158 (187)
T d1mc0a1 142 EHVIQHCFHYTGTVLTS 158 (187)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999864
No 46
>d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.29 E-value=5.1e-07 Score=82.85 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=62.8
Q ss_pred ceEEec-CCCcEeechhhhHHHhCCCcchhcc----------------------ccCC----CccceeeEEEccCCcEEE
Q 001353 764 PIFASD-ENACCSEWNAAMEKVTGWMRHEVIG----------------------ITGQ----GTENFPFGFFNRQGQFVE 816 (1093)
Q Consensus 764 ~I~~~D-~~g~i~~~N~a~~~l~G~~~eEliG----------------------~~~~----~~~~~e~~~~~kdG~~~~ 816 (1093)
+|+++| .+|+|+++|++++++|||+++|++| .... .....++...+++|+.+|
T Consensus 10 AI~~id~~~G~I~~~N~a~~~l~Gy~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~G~~~p 89 (114)
T d1ll8a_ 10 AIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISRSGEKIP 89 (114)
T ss_dssp EEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCTTCCCEE
T ss_pred EEEEEECCCCEEEEECHHHHHhhcCCHHHHcCCCeeeecCcccHHHHHHHHHHHHhcCCCccceeeEEEEEEccCCcEEE
Confidence 899999 4799999999999999999999999 1111 123346788999999999
Q ss_pred EEEEEeEeecCCCcEEEEEEEEeecc
Q 001353 817 VALTASRRTDAEGKVIGCFCFMQILV 842 (1093)
Q Consensus 817 v~~~~~~i~d~~G~v~g~i~~~~DIT 842 (1093)
+++++.++..+++. . ++++++||+
T Consensus 90 vevs~~~i~~~~~~-~-~l~vi~dV~ 113 (114)
T d1ll8a_ 90 VSVWMKRMRQERRL-C-CVVVLEPVE 113 (114)
T ss_dssp EECCEECCBSSSSB-E-EEEEEEECC
T ss_pred EEEEEEEEEECCeE-E-EEEEEEECc
Confidence 99999998765554 3 689999994
No 47
>d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]}
Probab=98.24 E-value=4.7e-07 Score=84.75 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc-----------------------ccCCCccceee
Q 001353 749 GDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG-----------------------ITGQGTENFPF 805 (1093)
Q Consensus 749 ~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG-----------------------~~~~~~~~~e~ 805 (1093)
.....++++++. ||+++|.+|+|++||+++++++||++++++| ...+.....+.
T Consensus 17 ~~~d~~ld~~p~---gi~~lD~~G~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~ 93 (125)
T d1nwza_ 17 KMDDGQLDGLAF---GAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFE 93 (125)
T ss_dssp TCCHHHHTTCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHhCCCc---cEEEEeCCCCEEEEcHHHHHhhccchHhhcCCCHHHccCchhhhhheeeeceeeeecCCcceEEE
Confidence 335577888887 9999999999999999999999999999999 11111222233
Q ss_pred EEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEeec
Q 001353 806 GFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQIL 841 (1093)
Q Consensus 806 ~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~DI 841 (1093)
...+++|+.+|+.++..+..+. .- +..+++||
T Consensus 94 ~~~~~~G~~~~v~v~l~~~~~g--~~--~~v~V~di 125 (125)
T d1nwza_ 94 YTFDYQMTPTKVKVHMKKALSG--DS--YWVFVKRV 125 (125)
T ss_dssp EEECTTSCCEEEEEEEEECSSS--SE--EEEEEEEC
T ss_pred EEeccCCcEEEEEEEEEEecCC--CE--EEEEEEEC
Confidence 4578999999999988776554 32 33466664
No 48
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]}
Probab=98.14 E-value=1.1e-06 Score=80.21 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=57.1
Q ss_pred HHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcchhcc------------------------ccCCCccceeeE
Q 001353 751 YEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIG------------------------ITGQGTENFPFG 806 (1093)
Q Consensus 751 lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eEliG------------------------~~~~~~~~~e~~ 806 (1093)
+.++++++|+ ||+++|.+|+|++||+++++++||+++|++| ..+.....+++.
T Consensus 5 ~~A~ld~~p~---gvi~~D~~G~I~~~N~aa~~~~G~~~eellG~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~ 81 (110)
T d1mzua_ 5 GTAEFDALPV---GAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFV 81 (110)
T ss_dssp -CTTGGGCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEE
T ss_pred HHHHHhCCCc---EEEEEcCCCCEEEeHHHHHHHHcCCHHHHcCCCHHHhcCChhhhHHHHHHHHHHHhccccCcceEEE
Confidence 4577888888 9999999999999999999999999999999 112222233333
Q ss_pred EEccCCcEEEEEEEEeEeecC
Q 001353 807 FFNRQGQFVEVALTASRRTDA 827 (1093)
Q Consensus 807 ~~~kdG~~~~v~~~~~~i~d~ 827 (1093)
.+++|+.+++.++..+..+.
T Consensus 82 -l~~~G~~~~v~v~~~~~~~~ 101 (110)
T d1mzua_ 82 -FDFQMAPVRVQIRMQNAGVP 101 (110)
T ss_dssp -EECSSCEEEEEEEEEECSST
T ss_pred -EecCCceEEEEEEEEEecCC
Confidence 47899999999988876543
No 49
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.68 E-value=1.9e-05 Score=71.58 Aligned_cols=73 Identities=7% Similarity=0.062 Sum_probs=56.7
Q ss_pred eEEecCCCcEeechhhhHHHhCCCc-chhcc------------------------ccCCCccceeeEEEccCCcEEEEEE
Q 001353 765 IFASDENACCSEWNAAMEKVTGWMR-HEVIG------------------------ITGQGTENFPFGFFNRQGQFVEVAL 819 (1093)
Q Consensus 765 I~~~D~~g~i~~~N~a~~~l~G~~~-eEliG------------------------~~~~~~~~~e~~~~~kdG~~~~v~~ 819 (1093)
+.-.|.+|+++++|+++.+++||.+ +|++| ...+.....++++.+|||+++|+..
T Consensus 5 ~trh~~~g~~~~vd~~~~~~~gy~~~eelig~s~~~f~HPeD~~~~~~~~~~~~~~~~g~~~~~~yR~~~kdG~~vWv~t 84 (109)
T d1oj5a_ 5 MTKQDTTGKIISIDTSSLRAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTMLSAHT 84 (109)
T ss_dssp EEEECTTCCEEEEECHHHHTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCEEEEEE
T ss_pred EEEECCCceEEEECHHHhhHhhcCCHHHHcCCcHHHeECcccchHHHhhHHHHHHHhhcccchhhhhhhhccCcEEEEEE
Confidence 4457999999999999999999985 89999 2234456778999999999999999
Q ss_pred EEeEeecCCCc-EEEEEEE
Q 001353 820 TASRRTDAEGK-VIGCFCF 837 (1093)
Q Consensus 820 ~~~~i~d~~G~-v~g~i~~ 837 (1093)
++.+++|+.|. +..++|+
T Consensus 85 ~~~~~~~~~~~~~~~Ii~~ 103 (109)
T d1oj5a_ 85 RCKLCYPQSPDMQPFIMGI 103 (109)
T ss_dssp EEEEECC----CCCEEEEE
T ss_pred EEEEEECCCCCcccEEEEE
Confidence 99999987544 4434443
No 50
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]}
Probab=97.50 E-value=0.0017 Score=62.41 Aligned_cols=145 Identities=12% Similarity=0.118 Sum_probs=101.8
Q ss_pred HHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHhhh-CCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHH
Q 001353 212 SQKLAVSAISR-LQALPGGDIGLLCDTVVEDVQKLT-GYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQA 289 (1093)
Q Consensus 212 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vr~~~-~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~ 289 (1093)
.|.-+.+-|+. +.. ..++..++++++..+.+.+ ++|.+-+|-.+++ +.+++..... .-+.++|-.. --
T Consensus 5 ~y~~L~~~i~~ll~~--e~dl~~~L~~i~~~l~~~~~~~~~~~~yl~d~~--~~~l~~~~~~----~~~~~i~~g~--g~ 74 (159)
T d1vhma_ 5 FYADLNRDFNALMAG--ETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQGK----IACVRIPVGR--GV 74 (159)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHSSSCSEEEEEEEETT--EEEEEEEEES----CCCSEEETTS--HH
T ss_pred HHHHHHHHHHHHHcC--CccHHHHHHHHHHHHHHhhccCceEEEEEEECC--EeeeeeecCC----cceeEEecCC--Ch
Confidence 34433344443 333 3489999999998886655 6788888886654 3444433322 1223454321 23
Q ss_pred HHHhHhcCCeEEEecCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEe
Q 001353 290 ARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVC 369 (1093)
Q Consensus 290 ~r~l~~~~~~r~i~d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~ 369 (1093)
+-.-+..++..+|.|+...|..+ ++ ..+++|.|+|||+.+| +.+|.|..
T Consensus 75 ~g~v~~~~~~~~v~d~~~d~~~~---------------------~~------~~~~~S~l~vPl~~~~----~viGvl~v 123 (159)
T d1vhma_ 75 CGTAVARNQVQRIEDVHVFDGHI---------------------AC------DAASNSEIVLPLVVKN----QIIGVLDI 123 (159)
T ss_dssp HHHHHHHTSCEEESCTTTCTTCC---------------------CS------CCCCSEEEEEEEEETT----EEEEEEEE
T ss_pred HHHHHHcCCcEEecChHHhhhhh---------------------hc------ccccceeEEeCEEECC----EEEEEEEe
Confidence 44456778888999988766532 11 2467899999999988 99999999
Q ss_pred ecCCCCCCCchHHHHHHHHHHHHHHHHH
Q 001353 370 HHTSPRYIPFPLRYACEFLVQAFSLQLY 397 (1093)
Q Consensus 370 h~~~p~~~~~~~r~~~~~l~~~~~~~l~ 397 (1093)
.+..|+.++.+...+++.+|.+++..|+
T Consensus 124 ~s~~~~~F~~~d~~ll~~la~qia~ai~ 151 (159)
T d1vhma_ 124 DSTVFGRFTDEDEQGLRQLVAQLEKVLA 151 (159)
T ss_dssp EESSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998885
No 51
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.27 E-value=0.00034 Score=70.44 Aligned_cols=79 Identities=11% Similarity=0.067 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-C----------
Q 001353 978 LQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-W---------- 1046 (1093)
Q Consensus 978 L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~---------- 1046 (1093)
+.+++.+|+.||+++. + ..|.|.+...+ .-.+.|.|||.|||++.++.+|.++.+ +
T Consensus 7 ~~~~v~ELi~NsiDA~-A--t~I~i~i~~~g----------~~~i~V~DnG~Gi~~~dl~~~~~~~~tsk~~~~~~~~~~ 73 (203)
T d1h7sa2 7 LSTAVKELVENSLDAG-A--TNIDLKLKDYG----------VDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQV 73 (203)
T ss_dssp HHHHHHHHHHHHHHTT-C--SEEEEEEEGGG----------TSEEEEEECSCCCCGGGSGGGGC----------CCTTCS
T ss_pred HHHHHHHHHHHHHcCC-C--CEEEEEEEcCC----------EEEEEEeeCCcccCHHHhhhhhhheeecccccccccccc
Confidence 6699999999999975 3 68888875322 125789999999999999999999765 1
Q ss_pred --CCCccchHHHHHHHHHHcCCEEEEEeeC
Q 001353 1047 --TTPEGLGLKLSRKLLIMMNGRVRYVREN 1074 (1093)
Q Consensus 1047 --~~GtGLGL~ivr~ive~hgG~I~v~S~~ 1074 (1093)
.+-.|.+|+-...+ +++.+.|..
T Consensus 74 ~t~GfrGeaL~si~~~-----s~~~i~s~~ 98 (203)
T d1h7sa2 74 ETFGFRGEALSSLCAL-----SDVTISTCH 98 (203)
T ss_dssp EEESSSSSHHHHHHHH-----SEEEEEEEC
T ss_pred cccCccchhhhhhhhc-----cceEEEeec
Confidence 12357777755222 567776654
No 52
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}
Probab=97.13 E-value=0.00071 Score=68.67 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCC-C----------
Q 001353 978 LQLVLSDFLHCVVRHAPSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQ-W---------- 1046 (1093)
Q Consensus 978 L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~-~---------- 1046 (1093)
+.+++.+|+.||+++.. ..|.|.+...+ .-.++|.|||.||++++++.+++++.| +
T Consensus 25 ~~~~vkELveNsiDA~A---t~I~V~i~~~g----------~~~i~V~DnG~Gi~~~d~~~~~~r~~TSKi~~~~dl~~~ 91 (218)
T d1b63a2 25 PASVVKELVENSLDAGA---TRIDIDIERGG----------AKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAI 91 (218)
T ss_dssp HHHHHHHHHHHHHHTTC---SEEEEEEEGGG----------TSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTC
T ss_pred HHHHHHHHHhhhhcCCC---CEEEEEEEcCC----------ccEEEEeeCCCCcCHHHHHhhHhccccccccchhhcchh
Confidence 55999999999999765 47888774432 225788999999999999999999877 1
Q ss_pred --CCCccchHHHHHHHHHHcCCEEEEEeeCC
Q 001353 1047 --TTPEGLGLKLSRKLLIMMNGRVRYVRENS 1075 (1093)
Q Consensus 1047 --~~GtGLGL~ivr~ive~hgG~I~v~S~~g 1075 (1093)
.+-.|-.|+....+ +++.+.|...
T Consensus 92 ~t~GFRGEAL~Si~~v-----s~l~I~s~~~ 117 (218)
T d1b63a2 92 ISLGFRGEALASISSV-----SRLTLTSRTA 117 (218)
T ss_dssp CSSCCSSCHHHHHHTT-----SEEEEEEECT
T ss_pred hhhccchhHHHHhhhc-----CceEEeeecC
Confidence 22357777755333 6777776543
No 53
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.02 E-value=0.077 Score=51.17 Aligned_cols=131 Identities=8% Similarity=0.035 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHhhh-----CCCeEEEEeecCCCCceEEEEecCCCCCCccCCccCCCCchHHHHHhHhcCCeEEEe
Q 001353 229 GDIGLLCDTVVEDVQKLT-----GYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMIC 303 (1093)
Q Consensus 229 ~~~~~~~~~~~~~vr~~~-----~~dRv~iy~f~~d~~G~vvaE~~~~~~~~~lg~~~p~~dip~~~r~l~~~~~~r~i~ 303 (1093)
.++...++.+++.+.+.+ ..|++=+|..+.+..+.++......... +.++|... --+..-+..++.-+|.
T Consensus 37 ~~l~~~L~~i~~ll~~~~~~~~~~~d~~g~yl~~~~~~~~l~~~~~~g~~~---~~~i~~g~--Gi~G~v~~~g~~i~v~ 111 (176)
T d1f5ma_ 37 VNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGKVA---CQMIQFGK--GVCGTAASTKETQIVP 111 (176)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEESCC---CSEEETTS--HHHHHHHHHTSCEEES
T ss_pred ccHHHHHHHHHHHHHHHHHhhhcccCceEEEEEecCCCceEEEeecCCCcc---ceeecCCC--cHHHHHHHhCCeEEec
Confidence 466666666666554433 4578888999999888887665543221 33555432 3455667788888999
Q ss_pred cCCCCCcccccccccCCCccccCccccCCChhHHHHHHhcCceeEEEEEEEEcCCCCcceeEEEEeecCCCCCCCchHHH
Q 001353 304 DCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRY 383 (1093)
Q Consensus 304 d~~~~~~~l~~~~~~~~~ldl~~s~lRs~s~~h~~yl~n~~v~asl~~~i~~~~~~~~~LWGl~~~h~~~p~~~~~~~r~ 383 (1093)
|+...|-.+ ++ ..+++|.|+|||+..+ +++.|.|.+.+..|+.++.+.+.
T Consensus 112 D~~~dpr~~---------------------~~------~~~~~S~l~vPl~~~~---g~~~GVl~v~s~~~~~F~~~d~~ 161 (176)
T d1f5ma_ 112 DVNKYPGHI---------------------AC------DGETKSEIVVPIISND---GKTLGVIDIDCLDYEGFDHVDKE 161 (176)
T ss_dssp CGGGSTTCC---------------------CS------STTCCEEEEEEEECTT---SCEEEEEEEEESSTTCCCHHHHH
T ss_pred CcccCcchh---------------------hc------cccccceEEecccccC---CcEEEEEEeccCCCCCcCHHHHH
Confidence 987665321 11 1357899999998532 39999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 001353 384 ACEFLVQAFSL 394 (1093)
Q Consensus 384 ~~~~l~~~~~~ 394 (1093)
+++.+|..+|.
T Consensus 162 ~l~~~A~~ia~ 172 (176)
T d1f5ma_ 162 FLEKLAKLINK 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 54
>d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=95.61 E-value=0.0085 Score=53.73 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=43.1
Q ss_pred EEEECC-CCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHH
Q 001353 631 IFGVDS-SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLIC 681 (1093)
Q Consensus 631 I~~~D~-dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~ 681 (1093)
++++|. +|+|+++++...+++|+++++++|+++. +++++++.+.+++.+.
T Consensus 20 Llvld~~d~~I~~vS~N~~~lLG~~~~~llG~~l~-dll~~~~~~~i~~~l~ 70 (114)
T d2oola2 20 LFVVSETDLRIASVSANVEDLLRQPPASLLNVPIA-HYLTAASAARLTHALH 70 (114)
T ss_dssp EEEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGG-GGBCHHHHHHHHHHHC
T ss_pred EEEEECCCCEEEEEcCCHHHHhCCChHHHcCCCHH-HhCCHHHHHHHHHHHh
Confidence 456674 7999999999999999999999999999 9999988877766553
No 55
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=94.88 E-value=0.02 Score=58.27 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHcC---CCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhh--------hccCCCC
Q 001353 977 RLQLVLSDFLHCVVRHA---PSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIED--------MYNGRNQ 1045 (1093)
Q Consensus 977 ~L~qVl~nLl~NAik~t---~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~--------IFe~F~~ 1045 (1093)
-|..+|.++|.||+++. +. -..|.|.+...++ .++|.|||.|||-+..+. +|....+
T Consensus 53 gl~ki~dEil~Na~D~~~r~~~-~~~I~v~i~~~~~-----------si~V~d~GrGIPv~~h~~~~~~~~e~ift~l~a 120 (239)
T d1pvga2 53 GLFKIFDEILVNAADNKVRDPS-MKRIDVNIHAEEH-----------TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLT 120 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CCEEEEEEETTTT-----------EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSE
T ss_pred cceeecceeeecccchhhhccc-cceEEEEEeCCCC-----------EEEEEecCcceeeeeccccccchhheeeEeecc
Confidence 47788899999998863 22 3578888766655 488889999999764433 5554222
Q ss_pred -----------CCCCccchHHHHHHHHH
Q 001353 1046 -----------WTTPEGLGLKLSRKLLI 1062 (1093)
Q Consensus 1046 -----------~~~GtGLGL~ivr~ive 1062 (1093)
..+..|+|.+++--+-+
T Consensus 121 g~nfd~~~~k~sgGlnGvG~~vvNalS~ 148 (239)
T d1pvga2 121 SSNYDDDEKKVTGGRNGYGAKLCNIFST 148 (239)
T ss_dssp ESCCCTTSCCCCSCCSSCHHHHHHHTEE
T ss_pred ccccccccceeeCCeeccceeehhhhhH
Confidence 34458999999855543
No 56
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]}
Probab=94.78 E-value=0.045 Score=54.78 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHcCCC-CCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhh--------HhhhccCCCC-
Q 001353 976 IRLQLVLSDFLHCVVRHAPS-PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL--------IEDMYNGRNQ- 1045 (1093)
Q Consensus 976 ~~L~qVl~nLl~NAik~t~~-~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~--------~~~IFe~F~~- 1045 (1093)
.-|.+++.++|.||+...-+ ....|.|.+...+. ++|.|||.|||-+. .+-||....+
T Consensus 33 ~gl~~l~~Eil~Na~De~~~~~~~~i~v~i~~dgs------------IsV~ddGrGIPv~~h~~~~~~~~e~if~~l~tg 100 (219)
T d1ei1a2 33 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNS------------VSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 100 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSC------------EEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEE
T ss_pred ccchhhhHhHhhhhhhhhcCCCccceeEEEcCCCe------------EEEEECCccccccccCccCCchhhhhhhhhhhc
Confidence 35889999999999987422 13566666543332 78999999999664 4556655221
Q ss_pred ----------CCCCccchHHHHHHHHH
Q 001353 1046 ----------WTTPEGLGLKLSRKLLI 1062 (1093)
Q Consensus 1046 ----------~~~GtGLGL~ivr~ive 1062 (1093)
..+..|+|++++--+-+
T Consensus 101 ~~fd~~~~~~sgG~nGvG~~~~NalS~ 127 (219)
T d1ei1a2 101 GKFDDNSYKVSGGLHGVGVSVVNALSQ 127 (219)
T ss_dssp SCSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred cCCCCCcceeEcCccccceeEEEEeee
Confidence 33457999999855433
No 57
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=94.23 E-value=0.022 Score=54.41 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHcCCC-CCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCCCCCCCccchHH
Q 001353 977 RLQLVLSDFLHCVVRHAPS-PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLK 1055 (1093)
Q Consensus 977 ~L~qVl~nLl~NAik~t~~-~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~~~~~GtGLGL~ 1055 (1093)
-|..++.+++.|||+-.-+ -...|.|.+...+. ++|.|||.|||-+..+ +.+..++.+.
T Consensus 5 glhHlv~EivDNsiDEa~aG~~~~I~V~l~~D~s------------i~V~D~GRGIPvd~h~--------~~~~~~~e~v 64 (168)
T d1s14a_ 5 RPNHLGQEVIDNSVDEALAGHAKRVDVILHADQS------------LEVIDDGRGMPVDIHP--------EEGVPAVELI 64 (168)
T ss_dssp STHHHHHHHHHHHHHHHHTTSCSEEEEEECTTSC------------EEEEECSSCCCCSBCT--------TTCSBHHHHH
T ss_pred CCceEEeeeeecHHHHHHcCCCCEEEEEEeCCCe------------EEEEEEecccceeeec--------cCCCchhhcc
Confidence 3567889999999974222 24578887755554 8899999999976322 2344566666
Q ss_pred HHHHHHHHcCCEEEEEeeCCeeEEEEEE
Q 001353 1056 LSRKLLIMMNGRVRYVRENSKCYFVIDL 1083 (1093)
Q Consensus 1056 ivr~ive~hgG~I~v~S~~ggt~F~v~L 1083 (1093)
+....|..+-=.+.++..-+|-.+...+
T Consensus 65 ~t~SVVNALS~~l~v~v~RdGk~~~q~f 92 (168)
T d1s14a_ 65 LCISVVNALSKRVEVNVRRDGQVYNIAF 92 (168)
T ss_dssp HHTSHHHHHEEEEEEEEEETTEEEEEEE
T ss_pred CceeEeeeccCeEEEEEEECCEEEEEEE
Confidence 6666788887777777655553344443
No 58
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Probab=93.85 E-value=0.085 Score=52.48 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHHHHHHcCCC-CCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhH--------hhhccCCC
Q 001353 974 DRIRLQLVLSDFLHCVVRHAPS-PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLI--------EDMYNGRN 1044 (1093)
Q Consensus 974 D~~~L~qVl~nLl~NAik~t~~-~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~--------~~IFe~F~ 1044 (1093)
+..-|.+++.++|.||++..-+ ....|.|.+...+ .++|.|||.|||-+.. +-||....
T Consensus 23 ~~~Gl~~l~~Eil~Na~De~~~~~~~~i~v~~~~dg------------~i~V~ddG~GIpv~~h~~~~~~~~e~if~~l~ 90 (212)
T d1kija2 23 GVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDG------------SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLH 90 (212)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS------------CEEEEECSSCCCCSEETTTTEEHHHHHHHSSC
T ss_pred CCcchhhhhhhhhhhhhhhhhhcCCceEEEEEcCCC------------cEEEEECCcccccccccccCcceEEEEEEEEc
Confidence 3456889999999999986322 1356666654332 2889999999997542 23444321
Q ss_pred C-----------CCCCccchHHHHHHHH
Q 001353 1045 Q-----------WTTPEGLGLKLSRKLL 1061 (1093)
Q Consensus 1045 ~-----------~~~GtGLGL~ivr~iv 1061 (1093)
+ ..+..|+|++++--+-
T Consensus 91 ~~~~~d~~~~~~sgG~hGvGa~vvNalS 118 (212)
T d1kija2 91 SGGKFEQGAYKVSGGLHGVGASVVNALS 118 (212)
T ss_dssp EESGGGGSSCCCCSCSSTTSHHHHHHTE
T ss_pred ccccccCCCceecCCCccccceEEEEec
Confidence 1 4456799999985543
No 59
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=92.65 E-value=0.049 Score=54.16 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=48.5
Q ss_pred EEecHHHHHHHHHHHHHHHHHcC---------------CCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhh
Q 001353 971 LNGDRIRLQLVLSDFLHCVVRHA---------------PSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHL 1035 (1093)
Q Consensus 971 v~~D~~~L~qVl~nLl~NAik~t---------------~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~ 1035 (1093)
+|.|+. -.|.+||.||.++. +.....|.|....... .|.|.|||.||..+.
T Consensus 22 lYs~~~---iflRELiqNa~DA~~~~~~~~~~~~~~~~~~~~~~I~i~~d~~~~-----------~l~i~DnGiGMt~~~ 87 (213)
T d2iwxa1 22 VYSNKE---IFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQK-----------VLEIRDSGIGMTKAE 87 (213)
T ss_dssp CCSCTT---HHHHHHHHHHHHHHHHHHHHTTTCGGGGTTSCCCCEEEEEEGGGT-----------EEEEEECSSCCCHHH
T ss_pred hcCCch---HHHHHHHHhHHHHHHHHHHhhccCcccccCCcccccccccccccc-----------eeEEecCCccccHHH
Confidence 444543 45799999998762 1112345555444444 578889999999988
Q ss_pred HhhhccCCCC-----------------CCCCccchHHHHHHH
Q 001353 1036 IEDMYNGRNQ-----------------WTTPEGLGLKLSRKL 1060 (1093)
Q Consensus 1036 ~~~IFe~F~~-----------------~~~GtGLGL~ivr~i 1060 (1093)
+.+-+....+ -.+.-|+|++.|--+
T Consensus 88 ~~~~l~~ia~S~~~~~~~~~~~~~~~~~IGqFGIGfyS~Fmv 129 (213)
T d2iwxa1 88 LINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLV 129 (213)
T ss_dssp HHHHHTTCCCSTHHHHHHHHHHTCCGGGGGGGTCGGGGGGGT
T ss_pred HHHHHhhhhcccchHHHhhhhhhhhhhhhcccccchhhhhhh
Confidence 8766655322 134679999877544
No 60
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.81 E-value=0.1 Score=51.65 Aligned_cols=70 Identities=7% Similarity=0.094 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcC---------------CCCCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccCCC
Q 001353 980 LVLSDFLHCVVRHA---------------PSPDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNGRN 1044 (1093)
Q Consensus 980 qVl~nLl~NAik~t---------------~~~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~F~ 1044 (1093)
-.|.+||.||.++. ......|.|.+..... .+.|.|||+||+.+.+.+-+....
T Consensus 27 iflRELIqNa~DA~~k~~~~~~~~~~~~~~~~~~~i~i~~d~~~~-----------~l~I~DnGiGMt~~el~~~LgtIa 95 (208)
T d1uyla_ 27 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDR-----------TLTIVDTGIGMTKADLINNLGTIA 95 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTT-----------EEEEEECSCCCCHHHHHTGGGSCH
T ss_pred HhHHHHHhhHHHHHHHHHHHhcCCchhccCCcccceEEeecCCcc-----------EEEEEcCCccccHHHHHhhccccc
Confidence 46789999997651 1113566666655544 677889999999988765444421
Q ss_pred C-----------------CCCCccchHHHHHHH
Q 001353 1045 Q-----------------WTTPEGLGLKLSRKL 1060 (1093)
Q Consensus 1045 ~-----------------~~~GtGLGL~ivr~i 1060 (1093)
+ ..+.-|+|++.|--+
T Consensus 96 ~Sg~~~f~~~~~~~~~~~~IGqFGVGFyS~FmV 128 (208)
T d1uyla_ 96 KSGTKAFMEALQAGADISMIGQFGVGFYSAYLV 128 (208)
T ss_dssp HHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGT
T ss_pred ccchHHHHHhhhhccchhhhhhcccceEEeeec
Confidence 1 124679999988544
No 61
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]}
Probab=89.46 E-value=0.21 Score=49.94 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHcC---------C----C--CCCeEEEEEEeCCccccCCCceeEEEEEEecCCCCCChhhHhhhccC--
Q 001353 980 LVLSDFLHCVVRHA---------P----S--PDGWVEIKVLPGLKLIKDADQFVHVQFRLTHPGEGIPSHLIEDMYNG-- 1042 (1093)
Q Consensus 980 qVl~nLl~NAik~t---------~----~--~~g~I~I~v~~~~~~~~~~~~~~~v~l~V~DnG~GIp~e~~~~IFe~-- 1042 (1093)
-.|.+||.||.++. . . ....|.|.+..... .+.|.|||+||..+.+.+-+..
T Consensus 26 iflRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~i~i~~d~~~~-----------~l~i~DnGiGMt~~e~~~~lgtIa 94 (227)
T d2gqpa1 26 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKN-----------LLHVTDTGVGMTREELVKNLGTIA 94 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTT-----------EEEEEECSCCCCHHHHHHHHHCC-
T ss_pred hhHHHHHhhHHHHHHHHHHHhccCcccccccchhhhhcccCCCCc-----------EEEEEecCccccHHHHHHHHHHHh
Confidence 45689999998751 1 1 12345555555554 6778899999998887765543
Q ss_pred --CCC----C--------------CCCccchHHHHHHHHH
Q 001353 1043 --RNQ----W--------------TTPEGLGLKLSRKLLI 1062 (1093)
Q Consensus 1043 --F~~----~--------------~~GtGLGL~ivr~ive 1062 (1093)
+.+ + .+.-|+|++.|.-+.+
T Consensus 95 ~Sgt~~f~~~~~~~~~~~~~~~~~IGqFGvGfyS~FmVad 134 (227)
T d2gqpa1 95 KSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVAD 134 (227)
T ss_dssp --------------------CHHHHHHTTCGGGGGGGTEE
T ss_pred hcchHHHHHhhhhcccccccchhhhhhcCcceeEEEeeee
Confidence 111 0 1147999988865544
No 62
>d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=78.59 E-value=0.61 Score=41.91 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=34.9
Q ss_pred EEEC-CCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHH
Q 001353 632 FGVD-SSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVEN 678 (1093)
Q Consensus 632 ~~~D-~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~ 678 (1093)
+++| .+++|+.++..+.+++|+++++++|+++. +++.++....++.
T Consensus 30 Lald~~~~~I~~aS~N~~~~lG~~~~~lLG~~l~-~ll~~~~~~~l~~ 76 (127)
T d2veaa3 30 VVLQEPDLTISQISANCTGILGRSPEDLLGRTLG-EVFDSFQIDPIQS 76 (127)
T ss_dssp EEEETTTTEEEEEETTHHHHTSCCTTTSSTTTTT-TTSBCC-------
T ss_pred EEEECCCCEEEEEcCCHHHHhCcChHHHcCCCHH-HHCCHHHHHHHHH
Confidence 4456 58999999999999999999999999998 8887776555444
No 63
>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]}
Probab=75.63 E-value=2.4 Score=37.80 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=33.7
Q ss_pred EEEECC-CCcEEEecHHHHHhcCCCccccCCCCcccccccc
Q 001353 631 IFGVDS-SGTINGWNAKVAELTGLPASEAMGKSLIDEVVHE 670 (1093)
Q Consensus 631 I~~~D~-dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~ 670 (1093)
++++|. +++|+.++....+++|++.++++|+++. +++..
T Consensus 38 LLald~~~~~I~~~S~N~~~~lG~~~~~llG~~l~-~ll~~ 77 (127)
T d2o9ca2 38 LLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLA-ALLPE 77 (127)
T ss_dssp EEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHH-HHCTT
T ss_pred EEEEECCCCEEEEECCCHHHHhCCChHHHcCCCHH-HHCCH
Confidence 344574 7999999999999999999999999998 77754
No 64
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]}
Probab=63.20 E-value=28 Score=30.28 Aligned_cols=77 Identities=22% Similarity=0.187 Sum_probs=46.1
Q ss_pred ccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccCCcEE
Q 001353 629 APIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVV 708 (1093)
Q Consensus 629 ~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG~~~ 708 (1093)
+-|+++|.+|+++..+.. +.+|+++. .+... ..+..|+.. +.... ..+++
T Consensus 51 ~~i~v~D~~G~v~a~~~~----------~~iG~~~~----~~~~~-------~a~~~g~~~----~~~~~----g~~g~- 100 (131)
T d1p0za_ 51 TYITVGDASGQRLYHVNP----------DEIGKSME----GGDSD-------EALINAKSY----VSVRK----GSLGS- 100 (131)
T ss_dssp SEEEEEETTSBEEECSSG----------GGTTSBCC----SSCCH-------HHHHHCCCE----EEEEE----ETTEE-
T ss_pred cEEEEECCCCCEEEccCh----------hhcCCccc----ccchH-------HHHHcCCcE----EEEEe----cCCcc-
Confidence 457888999998765332 33566544 12211 233444432 11111 12332
Q ss_pred EEEEEEEEeecCCCCEEEEEEEEEecch
Q 001353 709 YILVNACTSRDYKNNVKGVCFVGQDITH 736 (1093)
Q Consensus 709 ~v~v~~~pi~d~~g~v~gv~~v~~DITe 736 (1093)
......|++|.+|+++|++.+..++.+
T Consensus 101 -~~~~~~PI~~~~G~viGvV~Vg~~l~~ 127 (131)
T d1p0za_ 101 -SLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp -EEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred -EEEEEEEEECCCCcEEEEEEEEEEhHH
Confidence 346677999999999999999988765
No 65
>d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]}
Probab=55.49 E-value=8.8 Score=33.05 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=46.2
Q ss_pred EEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccCCcEEEE
Q 001353 631 IFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYI 710 (1093)
Q Consensus 631 I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG~~~~v 710 (1093)
++++|.+++|+.++..+.+++|++++ .+|+.+. +++.+.. ...++..+.+.......+.+ ..+|..+++
T Consensus 25 LLald~~~~I~~~S~N~~~~lg~~~~-~L~~~~~-~~~~~~~----~~~l~~~~~~~~~~~~~~~~-----~~~~~~~d~ 93 (113)
T d3c2wa3 25 LVTLRADGMVLAASENIQALLGFVAS-PGSYLTQ-EQVGPEV----LRMLEEGLTGNGPWSNSVET-----RIGEHLFDV 93 (113)
T ss_dssp EEEECTTSBEEEEETTHHHHTSSCCC-TTCBCCH-HHHHHHH----HHHHHHHHSCSSCCCCEEEE-----CCSSSCEEE
T ss_pred EEEEcCCCeEEEEcCCHHHHhCCChh-HhcccHH-HHhCHHH----HHHHHhhhhcCCCceeEEEe-----ccCCeEEEE
Confidence 45679999999999999999999865 5688776 5554433 34455556555544333333 224555555
Q ss_pred EEE
Q 001353 711 LVN 713 (1093)
Q Consensus 711 ~v~ 713 (1093)
.+.
T Consensus 94 ~~H 96 (113)
T d3c2wa3 94 IGH 96 (113)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 66
>d3by8a1 d.110.6.1 (A:46-178) Fumarate sensor DcuS {Escherichia coli [TaxId: 562]}
Probab=42.11 E-value=23 Score=31.14 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=47.9
Q ss_pred CccEEEECCCCcEEEecHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCCCCceEEEEEEEeeeccCCcE
Q 001353 628 TAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSV 707 (1093)
Q Consensus 628 ~~~I~~~D~dG~I~~~N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~~~~~~e~~l~~~~~~kdG~~ 707 (1093)
.+-|+++|.+|+++... ..+.+|+++. .+. ...+++|+.. +.+. .|..
T Consensus 50 a~~i~v~D~~G~~~a~~----------~~~~ig~~~~----g~~--------~~~Al~G~~~----~~~~------~gt~ 97 (133)
T d3by8a1 50 LLFIVVTDMQSLRYSHP----------EAQRIGQPFK----GDD--------ILKALNGEEN----VAIN------RGFL 97 (133)
T ss_dssp CSEEEEEETTCBBSCCS----------SGGGTTSBCC----CGG--------GTGGGGTCCE----EEEE------CSSS
T ss_pred CcEEEEEcCCccEEEeC----------ChhhcCCccc----CCc--------hhHHhCCCce----EEEE------EecC
Confidence 34588899999887542 2234566554 121 2345666421 1111 1222
Q ss_pred EEEEEEEEEeecCCCCEEEEEEEEEecchh
Q 001353 708 VYILVNACTSRDYKNNVKGVCFVGQDITHE 737 (1093)
Q Consensus 708 ~~v~v~~~pi~d~~g~v~gv~~v~~DITer 737 (1093)
........|+++.+|+++|++.+..++++.
T Consensus 98 g~~~~~~~Pv~~~~G~viGvV~Vg~~~~~i 127 (133)
T d3by8a1 98 AQALRVFTPIYDENHKQIGVVAIGLELSRV 127 (133)
T ss_dssp SCEEEEEEEEECTTSCEEEEEEEEEEHHHH
T ss_pred ceEEEEEEeeECCCCcEEEEEEEEEEHHHH
Confidence 234556689999999999999999887653
No 67
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]}
Probab=41.34 E-value=51 Score=28.41 Aligned_cols=86 Identities=14% Similarity=0.000 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCCCceEEecCCCcEeechhhhHHHhCCCcch--hcc--ccCCCccceeeEEEccCCcEEEEEEEEeE
Q 001353 748 QGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHE--VIG--ITGQGTENFPFGFFNRQGQFVEVALTASR 823 (1093)
Q Consensus 748 e~~lr~i~~~~~~li~~I~~~D~~g~i~~~N~a~~~l~G~~~eE--liG--~~~~~~~~~e~~~~~kdG~~~~v~~~~~~ 823 (1093)
+..++.+.+.... .-|++.|.+|.++..+.. +..|.+... ... ..+... +......+. .......|
T Consensus 38 ~~~~~~l~~~~~~--~~i~v~D~~G~v~a~~~~--~~iG~~~~~~~~~~a~~~g~~~----~~~~~g~~g--~~~~~~~P 107 (131)
T d1p0za_ 38 KALIDPMRSFSDA--TYITVGDASGQRLYHVNP--DEIGKSMEGGDSDEALINAKSY----VSVRKGSLG--SSLRGKSP 107 (131)
T ss_dssp HHHHHHHHHHSCC--SEEEEEETTSBEEECSSG--GGTTSBCCSSCCHHHHHHCCCE----EEEEEETTE--EEEEEEEE
T ss_pred HHHHHHHHHHcCC--cEEEEECCCCCEEEccCh--hhcCCcccccchHHHHHcCCcE----EEEEecCCc--cEEEEEEE
Confidence 3344555555432 369999999988765432 334432111 000 111111 112222222 34466789
Q ss_pred eecCCCcEEEEEEEEeeccc
Q 001353 824 RTDAEGKVIGCFCFMQILVP 843 (1093)
Q Consensus 824 i~d~~G~v~g~i~~~~DITe 843 (1093)
++|.+|+++|++.+-.++.+
T Consensus 108 I~~~~G~viGvV~Vg~~l~~ 127 (131)
T d1p0za_ 108 IQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EECTTCCEEEEEEEEEEGGG
T ss_pred EECCCCcEEEEEEEEEEhHH
Confidence 99999999999999877764
No 68
>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=40.48 E-value=9.7 Score=30.41 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEECCeEEEecCCCCHHHHHHH
Q 001353 447 ALYYGGRCWLVGVTPTESQLKDI 469 (1093)
Q Consensus 447 al~~~~~~~~~G~~p~~~~~~~l 469 (1093)
||+.||++...|..|+.++|.++
T Consensus 53 alvIdg~vv~~G~vPs~~ei~~~ 75 (77)
T d1iloa_ 53 GLAVDGELKIMGRVASKEEIKKI 75 (77)
T ss_dssp CEEETTEEEECSSCCCHHHHHHH
T ss_pred EEEECCEEEEEecCCCHHHHHHH
Confidence 68899999999999999988765
No 69
>d2p7ja2 d.110.6.2 (A:9-180) GGDEF family protein VP0354 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=29.47 E-value=89 Score=27.85 Aligned_cols=110 Identities=12% Similarity=0.017 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhcCcc--EEEECCCCcEEEe-cHHHHHhcCCCccccCCCCccccccccccHHHHHHHHHHHHcCC
Q 001353 611 DELSSVACEMVRLIETATAP--IFGVDSSGTINGW-NAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRALLGE 687 (1093)
Q Consensus 611 ~eL~~~~~~l~~lie~~~~~--I~~~D~dG~I~~~-N~~~~~llG~~~eeliG~~~~~~lv~~~~~~~~~~~l~~~l~g~ 687 (1093)
..+...+..|..++...|.- |.++|.+|+++.. +...... .. + +.. ......+++++.. +++..
T Consensus 51 ~~~~~l~~~~~~~~~~~~~~~~i~lid~~G~~~~~~~~~~~~~------~~-~-~~~-~~~~~~~r~yf~~----a~~~~ 117 (172)
T d2p7ja2 51 ANLTILENMWSSVARNQKLYKQIRFLDTSGTEKVRIKYDFKTS------IA-G-PSL-ILRDKSAREYFKY----AQSLD 117 (172)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECTTSBEEEEEEEETTTT------EE-E-ECC-CCCBCTTSHHHHH----HHTSC
T ss_pred hhHHHHHHHHHHHhhhhcceeeEEEECCCCCEEEEEecCCCCc------cc-c-Ccc-ccccchhhHHHHH----HHhCC
Confidence 34555667788888887766 7788999987643 2211100 00 0 000 1223344554444 44433
Q ss_pred CCceEEEEEEEeeeccCCcE----EEEEEEEEEeecCCCCEEEEEEEEEecch
Q 001353 688 EDKNVELKLRKFELQKQHSV----VYILVNACTSRDYKNNVKGVCFVGQDITH 736 (1093)
Q Consensus 688 ~~~~~e~~l~~~~~~kdG~~----~~v~v~~~pi~d~~g~v~gv~~v~~DITe 736 (1093)
...-+-..... ....|.. .++..-+.|+++ +|++.|++++--|++.
T Consensus 118 ~~~~~~s~~~~--~~~~g~~~~~~~p~i~~a~Pv~~-~g~~~Gvlvi~i~l~~ 167 (172)
T d2p7ja2 118 NEQISAWGIEL--ERDKGELVYPLSPSLRILMPISV-NDVRQGYLVLNVDIEY 167 (172)
T ss_dssp TTCCEEEEEEE--CEETTEECSSCCEEEEEEEEEEE-TTEEEEEEEEEEEHHH
T ss_pred CCeEEEecccc--ccccccceecCCeEEEEEEEEcC-CCEEEEEEEEEEcHHH
Confidence 32111111111 1112221 234445778876 7999999998776553
No 70
>d3by8a1 d.110.6.1 (A:46-178) Fumarate sensor DcuS {Escherichia coli [TaxId: 562]}
Probab=28.52 E-value=50 Score=28.68 Aligned_cols=71 Identities=15% Similarity=0.110 Sum_probs=40.5
Q ss_pred ceEEecCCCcEeec-hhhhHHHhCCCc--chhcc-ccCCCccceeeEEEccCCcEEEEEEEEeEeecCCCcEEEEEEEEe
Q 001353 764 PIFASDENACCSEW-NAAMEKVTGWMR--HEVIG-ITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQ 839 (1093)
Q Consensus 764 ~I~~~D~~g~i~~~-N~a~~~l~G~~~--eEliG-~~~~~~~~~e~~~~~kdG~~~~v~~~~~~i~d~~G~v~g~i~~~~ 839 (1093)
-|++.|.+|.++.. |+.. .|-+. ..+-. +.+. ..+-...|...+......|+++.+|+++|++++-.
T Consensus 52 ~i~v~D~~G~~~a~~~~~~---ig~~~~g~~~~~Al~G~------~~~~~~~gt~g~~~~~~~Pv~~~~G~viGvV~Vg~ 122 (133)
T d3by8a1 52 FIVVTDMQSLRYSHPEAQR---IGQPFKGDDILKALNGE------ENVAINRGFLAQALRVFTPIYDENHKQIGVVAIGL 122 (133)
T ss_dssp EEEEEETTCBBSCCSSGGG---TTSBCCCGGGTGGGGTC------CEEEEECSSSSCEEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEcCCccEEEeCChhh---cCCcccCCchhHHhCCC------ceEEEEEecCceEEEEEEeeECCCCcEEEEEEEEE
Confidence 59999999987764 3221 22110 00000 1111 11112223333456667899999999999999877
Q ss_pred eccc
Q 001353 840 ILVP 843 (1093)
Q Consensus 840 DITe 843 (1093)
++.+
T Consensus 123 ~~~~ 126 (133)
T d3by8a1 123 ELSR 126 (133)
T ss_dssp EHHH
T ss_pred EHHH
Confidence 7653
No 71
>d2p7ja2 d.110.6.2 (A:9-180) GGDEF family protein VP0354 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=25.38 E-value=1.1e+02 Score=27.02 Aligned_cols=97 Identities=5% Similarity=-0.026 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCceEEecCCCcEee-chhhhHHHhCCCcchhcc------------ccCCCccceeeEEEcc
Q 001353 744 FIRLQGDYEAIIQSVNPLIPPIFASDENACCSE-WNAAMEKVTGWMRHEVIG------------ITGQGTENFPFGFFNR 810 (1093)
Q Consensus 744 L~~se~~lr~i~~~~~~li~~I~~~D~~g~i~~-~N~a~~~l~G~~~eEliG------------~~~~~~~~~e~~~~~k 810 (1093)
....+..+..++.+.+. +..|++.|.+|+++. ++.......-.+..+... .......-.....-..
T Consensus 53 ~~~l~~~~~~~~~~~~~-~~~i~lid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~r~yf~~a~~~~~~~~~~s~~~~~~~ 131 (172)
T d2p7ja2 53 LTILENMWSSVARNQKL-YKQIRFLDTSGTEKVRIKYDFKTSIAGPSLILRDKSAREYFKYAQSLDNEQISAWGIELERD 131 (172)
T ss_dssp HHHHHHHHHHHHHHHCC-EEEEEEECTTSBEEEEEEEETTTTEEEECCCCCBCTTSHHHHHHHTSCTTCCEEEEEEECEE
T ss_pred HHHHHHHHHHHhhhhcc-eeeEEEECCCCCEEEEEecCCCCccccCccccccchhhHHHHHHHhCCCCeEEEeccccccc
Confidence 34556667777777766 346889999998654 322211111011111111 1112212122222233
Q ss_pred CCcE----EEEEEEEeEeecCCCcEEEEEEEEeecc
Q 001353 811 QGQF----VEVALTASRRTDAEGKVIGCFCFMQILV 842 (1093)
Q Consensus 811 dG~~----~~v~~~~~~i~d~~G~v~g~i~~~~DIT 842 (1093)
.|.. .++...+.|+++ +|++.|++++.-|.+
T Consensus 132 ~g~~~~~~~p~i~~a~Pv~~-~g~~~Gvlvi~i~l~ 166 (172)
T d2p7ja2 132 KGELVYPLSPSLRILMPISV-NDVRQGYLVLNVDIE 166 (172)
T ss_dssp TTEECSSCCEEEEEEEEEEE-TTEEEEEEEEEEEHH
T ss_pred cccceecCCeEEEEEEEEcC-CCEEEEEEEEEEcHH
Confidence 3432 334555678875 899999999877765
Done!