BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001355
(1093 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54316|HLYB_TREHY Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1
Length = 828
Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 31/176 (17%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKKIASAL 746
L +KV Q EAI +IS+A+ R R G + R +GS FLGP VGK +A L
Sbjct: 515 LHQKVVGQKEAISSISKAIRRSRAGLKTSKRPLGS-------FIFLGPTGVGKTALAKVL 567
Query: 747 AEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRG-------KVLVDYIYQE 799
+E +FG+ LI +D+S F +L G + ++
Sbjct: 568 SEFMFGDSDALIRIDMSEFME-------------KFAVSRLIGAPPGYVGYEEGGGLTEK 614
Query: 800 FRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
R KPYS++ ++++KA P V + L + + G+ TD++GR V S I + TS +
Sbjct: 615 VRRKPYSLILFDEIEKA-HPDVTNILLQVLEEGQLTDNFGRKVDFSNTIIIITSNL 669
>sp|Q8KG79|CLPB1_CHLTE Probable chaperone protein ClpB 1 OS=Chlorobium tepidum (strain
ATCC 49652 / DSM 12025 / TLS) GN=clpB1 PE=3 SV=1
Length = 438
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 17/169 (10%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIGNG---RDVGSNSKRGIWLAFLGPDKVGKKKIASAL 746
L +V QDEA+ +S AV R R G G R +GS FLGP VGK ++A L
Sbjct: 139 LHRRVVGQDEAVRAVSDAVKRSRAGMGDEKRPIGS-------FIFLGPTGVGKTELARTL 191
Query: 747 AEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806
AE +F ++ LI +D+S + + + + G+ + + R KP+S
Sbjct: 192 AEYLFDDEDALIRIDMSEYMEAHTVSRLVGAPP-GYVGYEEGGQ-----LTEAVRRKPFS 245
Query: 807 VVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
VV L++++K A P V + L + + G+ TDS GR V+ I + TS I
Sbjct: 246 VVLLDEIEK-AHPDVFNILLQILDDGRLTDSKGRTVNFKNTIIIMTSNI 293
>sp|Q7UM33|CLPB_RHOBA Chaperone protein ClpB OS=Rhodopirellula baltica (strain SH1)
GN=clpB PE=3 SV=2
Length = 881
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKKIASAL 746
L ++V QDEA+ +S AV R R G R +GS FLGP VGK ++ AL
Sbjct: 589 LHQRVVGQDEAVTAVSDAVRRSRSGLQDPNRPIGS-------FLFLGPTGVGKTELCKAL 641
Query: 747 AEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806
AE++F ++ ++ +D+S + + + + GK + + R +PY+
Sbjct: 642 AEVMFDDESAMVRIDMSEFMERHSVSRLIGAPP-GYVGYEEGGK-----LTEAVRRRPYA 695
Query: 807 VVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
V+ L++++K A P V + L + + G+ TD GR V+ + + V TS +
Sbjct: 696 VILLDEMEK-AHPDVFNVLLQVLDDGRLTDGQGRTVNFTNTVVVMTSNV 743
>sp|P33416|HSP78_YEAST Heat shock protein 78, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HSP78 PE=1 SV=2
Length = 811
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 80/171 (46%), Gaps = 19/171 (11%)
Query: 689 ALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIW-LAFLGPDKVGKKKIASALA 747
+L E+V QDEAI IS AV R G ++ KR I FLGP GK ++ ALA
Sbjct: 501 SLKERVVGQDEAIAAISDAVRLQRAG-----LTSEKRPIASFMFLGPTGTGKTELTKALA 555
Query: 748 EIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVD---YIYQEFRSKP 804
E +F ++ +I D+S Q + + G VL + + + R KP
Sbjct: 556 EFLFDDESNVIRFDMSEFQEKHTVSRLIGAPP---------GYVLSESGGQLTEAVRRKP 606
Query: 805 YSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
Y+VV ++ +KA P V L + + GK TDS G V I V TS I
Sbjct: 607 YAVVLFDEFEKAH-PDVSKLLLQVLDEGKLTDSLGHHVDFRNTIIVMTSNI 656
>sp|Q8NXY8|CLPC_STAAW ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1
Length = 818
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 17/174 (9%)
Query: 685 TLRIALAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKK 741
+L L E+V Q +A+ +IS+AV R R G R +GS FLGP VGK +
Sbjct: 501 SLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGS-------FIFLGPTGVGKTE 553
Query: 742 IASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR 801
+A ALAE +FG+ +I VD+S + + + + G+ + ++ R
Sbjct: 554 LARALAESMFGDDDAMIRVDMSEFMEKHAVSRLVGAP-LGYVGHDDGGQ-----LTEKVR 607
Query: 802 SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
KPYSV+ ++++K A P V + L + + G TD+ GR V I + TS +
Sbjct: 608 RKPYSVILFDEIEK-AHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNV 660
>sp|Q8XZR0|CLPB_RALSO Chaperone protein ClpB OS=Ralstonia solanacearum (strain GMI1000)
GN=clpB PE=3 SV=1
Length = 862
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 13/174 (7%)
Query: 684 KTLRIA--LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKK 741
K LR+ L E+V QDEA+ +S A+ R R G + N G +L FLGP VGK +
Sbjct: 561 KLLRMEDRLHERVVGQDEAVRLVSDAIRRSRAGIADE---NKPYGSFL-FLGPTGVGKTE 616
Query: 742 IASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR 801
+ ALA +F ++ LI +D+S + + + + G Y+ + R
Sbjct: 617 LCKALAGFLFDSEEHLIRIDMSEFMEKHSVSRLIGAPP-GYVGYEEGG-----YLTEAVR 670
Query: 802 SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
KPYSVV L++++K A P V + L + + G+ TD GR V + V TS +
Sbjct: 671 RKPYSVVLLDEVEK-AHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNL 723
>sp|Q8EU05|CLPB_OCEIH Chaperone protein ClpB OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=clpB PE=3
SV=1
Length = 809
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKKIASAL 746
L ++V Q EA+ +++A+ R R G R +GS FLGP VGK ++A AL
Sbjct: 509 LHDRVIGQSEAVNAVAKAIRRARAGLKDPKRPIGS-------FIFLGPTGVGKTELARAL 561
Query: 747 AEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806
AE++F ++ +I +D+ SE S + G+ + ++ R KPYS
Sbjct: 562 AEVMFADEDAMIRIDM-SEYMERHATSRLVGSPPGYVGYDEGGQ-----LTEKVRRKPYS 615
Query: 807 VVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
VV L++++K A P V + L + + G+ TDS GR V + + TS +
Sbjct: 616 VVLLDEVEK-AHPEVFNILLQVLEDGRLTDSKGRVVDFRNTVIIMTSNV 663
>sp|Q7NWN7|CLPB_CHRVO Chaperone protein ClpB OS=Chromobacterium violaceum (strain ATCC
12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 /
NCTC 9757) GN=clpB PE=3 SV=1
Length = 859
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 13/178 (7%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEI 749
L ++V QDEA+ ++ A+ R R G N G +L FLGP VGK ++ LA
Sbjct: 570 LHQRVVGQDEAVSAVADAIRRSRSGLA---DPNKPYGSFL-FLGPTGVGKTELCKTLASF 625
Query: 750 VFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVF 809
+F +K LI +D+S + + + G Y+ ++ R KPYSV+
Sbjct: 626 LFDSKDHLIRIDMSEYMEKHSVARLIGAPP-GYVGYEEGG-----YLTEQVRRKPYSVIL 679
Query: 810 LEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHSVHPQTT 867
L++++K A P V + L + + G+ TD GR V + V TS I G + T
Sbjct: 680 LDEVEK-AHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTVIVMTSNI--GSQQIQAMAT 734
>sp|Q81GM5|CLPB_BACCR Chaperone protein ClpB OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=clpB PE=3 SV=1
Length = 866
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 684 KTLRIA--LAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVG 738
K LR+ L+E+V Q+EA+ +S AV R R G R +GS FLGP VG
Sbjct: 564 KLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGS-------FIFLGPTGVG 616
Query: 739 KKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQ 798
K ++A LA+ +F ++ ++I +D+S + + + + G+ + +
Sbjct: 617 KTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAPP-GYVGYEEGGQ-----LTE 670
Query: 799 EFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
R KPYSVV L++++K A P V + L + + G+ TDS GR V + + TS I
Sbjct: 671 AVRRKPYSVVLLDEIEK-AHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNI 726
>sp|O31673|CLPE_BACSU ATP-dependent Clp protease ATP-binding subunit ClpE OS=Bacillus
subtilis (strain 168) GN=clpE PE=1 SV=1
Length = 699
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 17/179 (9%)
Query: 684 KTLRIALAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKK 740
K L L E+V Q+ A+ +++AV R R G R VGS F+GP VGK
Sbjct: 401 KELEAKLHERVIGQEAAVQKVAKAVRRSRAGLKSKNRPVGS-------FLFVGPTGVGKT 453
Query: 741 KIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEF 800
+++ LA+ +FG K +I +D+S + I + + G+ + ++
Sbjct: 454 ELSKTLADELFGTKDAIIRLDMSEYMEKHAVSKIIGSPP-GYVGHEEAGQ-----LTEKV 507
Query: 801 RSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGK 859
R PYS+V L++++K A P VQ + + G+ TDS GR VS + + TS G+
Sbjct: 508 RRNPYSIVLLDEIEK-AHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSNAGAGE 565
>sp|Q2YSD6|CLPC_STAAB ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=clpC PE=3 SV=1
Length = 818
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 23/177 (12%)
Query: 685 TLRIALAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKK 741
+L L E+V Q +A+ +IS+AV R R G R +GS FLGP VGK +
Sbjct: 501 SLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGS-------FIFLGPTGVGKTE 553
Query: 742 IASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVD---YIYQ 798
+A ALAE +FG+ +I VD+S + + G V D + +
Sbjct: 554 LARALAESMFGDDDAMIRVDMS---------EFMEKHAVSRLVGAPPGYVGHDDGGQLTE 604
Query: 799 EFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
+ R KPYSV+ ++++K A P V + L + + G TD+ GR V I + TS +
Sbjct: 605 KVRRKPYSVILFDEIEK-AHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNV 660
>sp|Q6GBW3|CLPC_STAAS ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3
SV=1
Length = 818
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 23/177 (12%)
Query: 685 TLRIALAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKK 741
+L L E+V Q +A+ +IS+AV R R G R +GS FLGP VGK +
Sbjct: 501 SLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGS-------FIFLGPTGVGKTE 553
Query: 742 IASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVD---YIYQ 798
+A ALAE +FG+ +I VD+S + + G V D + +
Sbjct: 554 LARALAESMFGDDDAMIRVDMS---------EFMEKHAVSRLVGAPPGYVGHDDGGQLTE 604
Query: 799 EFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
+ R KPYSV+ ++++K A P V + L + + G TD+ GR V I + TS +
Sbjct: 605 KVRRKPYSVILFDEIEK-AHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNV 660
>sp|Q6GJE4|CLPC_STAAR ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3
SV=1
Length = 818
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 23/177 (12%)
Query: 685 TLRIALAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKK 741
+L L E+V Q +A+ +IS+AV R R G R +GS FLGP VGK +
Sbjct: 501 SLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGS-------FIFLGPTGVGKTE 553
Query: 742 IASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVD---YIYQ 798
+A ALAE +FG+ +I VD+S + + G V D + +
Sbjct: 554 LARALAESMFGDDDAMIRVDMS---------EFMEKHAVSRLVGAPPGYVGHDDGGQLTE 604
Query: 799 EFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
+ R KPYSV+ ++++K A P V + L + + G TD+ GR V I + TS +
Sbjct: 605 KVRRKPYSVILFDEIEK-AHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNV 660
>sp|Q7A797|CLPC_STAAN ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1
Length = 818
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 23/177 (12%)
Query: 685 TLRIALAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKK 741
+L L E+V Q +A+ +IS+AV R R G R +GS FLGP VGK +
Sbjct: 501 SLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGS-------FIFLGPTGVGKTE 553
Query: 742 IASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVD---YIYQ 798
+A ALAE +FG+ +I VD+S + + G V D + +
Sbjct: 554 LARALAESMFGDDDAMIRVDMS---------EFMEKHAVSRLVGAPPGYVGHDDGGQLTE 604
Query: 799 EFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
+ R KPYSV+ ++++K A P V + L + + G TD+ GR V I + TS +
Sbjct: 605 KVRRKPYSVILFDEIEK-AHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNV 660
>sp|Q99W78|CLPC_STAAM ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=clpC PE=1 SV=1
Length = 818
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 23/177 (12%)
Query: 685 TLRIALAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKK 741
+L L E+V Q +A+ +IS+AV R R G R +GS FLGP VGK +
Sbjct: 501 SLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGS-------FIFLGPTGVGKTE 553
Query: 742 IASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVD---YIYQ 798
+A ALAE +FG+ +I VD+S + + G V D + +
Sbjct: 554 LARALAESMFGDDDAMIRVDMS---------EFMEKHAVSRLVGAPPGYVGHDDGGQLTE 604
Query: 799 EFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
+ R KPYSV+ ++++K A P V + L + + G TD+ GR V I + TS +
Sbjct: 605 KVRRKPYSVILFDEIEK-AHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNV 660
>sp|P0C281|CLPC_STAAC ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1
Length = 818
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 23/177 (12%)
Query: 685 TLRIALAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKK 741
+L L E+V Q +A+ +IS+AV R R G R +GS FLGP VGK +
Sbjct: 501 SLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGS-------FIFLGPTGVGKTE 553
Query: 742 IASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVD---YIYQ 798
+A ALAE +FG+ +I VD+S + + G V D + +
Sbjct: 554 LARALAESMFGDDDAMIRVDMS---------EFMEKHAVSRLVGAPPGYVGHDDGGQLTE 604
Query: 799 EFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
+ R KPYSV+ ++++K A P V + L + + G TD+ GR V I + TS +
Sbjct: 605 KVRRKPYSVILFDEIEK-AHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNV 660
>sp|Q2G0P5|CLPC_STAA8 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1
SV=1
Length = 818
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 23/177 (12%)
Query: 685 TLRIALAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKK 741
+L L E+V Q +A+ +IS+AV R R G R +GS FLGP VGK +
Sbjct: 501 SLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGS-------FIFLGPTGVGKTE 553
Query: 742 IASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVD---YIYQ 798
+A ALAE +FG+ +I VD+S + + G V D + +
Sbjct: 554 LARALAESMFGDDDAMIRVDMS---------EFMEKHAVSRLVGAPPGYVGHDDGGQLTE 604
Query: 799 EFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
+ R KPYSV+ ++++K A P V + L + + G TD+ GR V I + TS +
Sbjct: 605 KVRRKPYSVILFDEIEK-AHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNV 660
>sp|Q2FJB5|CLPC_STAA3 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3
SV=1
Length = 818
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 23/177 (12%)
Query: 685 TLRIALAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKK 741
+L L E+V Q +A+ +IS+AV R R G R +GS FLGP VGK +
Sbjct: 501 SLEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGS-------FIFLGPTGVGKTE 553
Query: 742 IASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVD---YIYQ 798
+A ALAE +FG+ +I VD+S + + G V D + +
Sbjct: 554 LARALAESMFGDDDAMIRVDMS---------EFMEKHAVSRLVGAPPGYVGHDDGGQLTE 604
Query: 799 EFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
+ R KPYSV+ ++++K A P V + L + + G TD+ GR V I + TS +
Sbjct: 605 KVRRKPYSVILFDEIEK-AHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNV 660
>sp|O67588|CLPB_AQUAE Chaperone protein ClpB OS=Aquifex aeolicus (strain VF5) GN=clpB
PE=3 SV=1
Length = 1006
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIW-LAFLGPDKVGKKKIASALAE 748
L ++V Q+ A+ +++A+ R R G + KR I FLGP VGK +++ ALAE
Sbjct: 687 LHKRVVDQEHAVKAVAEAIRRARAGL-----KDPKRPIASFLFLGPTGVGKTELSKALAE 741
Query: 749 IVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNI--DFCDCKLRGKVLVDYIYQEFRSKPYS 806
++FG++ LI +D+S + +S+ + + GK + + R KPYS
Sbjct: 742 LLFGDEDALIRLDMSE---FKEEHSVAKLIGAPPGYVGYEEGGK-----LTEAVRRKPYS 793
Query: 807 VVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
V+ L++++K A P V + + G+ TDS+GR V + + TS I
Sbjct: 794 VILLDEIEK-AHPRVLDLFLQVLDDGRLTDSHGRTVDFRNTVIIMTSNI 841
>sp|Q82SD8|CLPB_NITEU Chaperone protein ClpB OS=Nitrosomonas europaea (strain ATCC 19718
/ NBRC 14298) GN=clpB PE=3 SV=1
Length = 863
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 15/168 (8%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEI 749
L E+V QDEA+ +S A+ R R G N G +L FLGP VGK ++ ALA
Sbjct: 571 LHERVIGQDEAVRLVSDAIRRSRSGLA---DPNRPYGSFL-FLGPTGVGKTELCKALAGF 626
Query: 750 VFGNKGKLIHVDVSSEQRVSQPNSIFDCQNI--DFCDCKLRGKVLVDYIYQEFRSKPYSV 807
+F ++ LI VD+S + +S+ + + G Y+ ++ R KPYSV
Sbjct: 627 LFDSEEHLIRVDMSE---FMEKHSVARLIGAPPGYVGYEEGG-----YLTEQVRRKPYSV 678
Query: 808 VFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
+ L++++K A P V + L + + G+ TD GR V + V TS +
Sbjct: 679 ILLDEVEK-AHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNL 725
>sp|Q73BY1|CLPB_BACC1 Chaperone protein ClpB OS=Bacillus cereus (strain ATCC 10987)
GN=clpB PE=3 SV=1
Length = 866
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 684 KTLRIA--LAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVG 738
K LR+ L+E+V Q+EA+ +S AV R R G R +GS FLGP VG
Sbjct: 564 KLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGS-------FIFLGPTGVG 616
Query: 739 KKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQ 798
K ++A LA+ +F ++ ++I +D+S + + + + G+ + +
Sbjct: 617 KTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAPP-GYVGYEEGGQ-----LTE 670
Query: 799 EFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
R KPYSV+ L++++K A P V + L + + G+ TDS GR V + + TS I
Sbjct: 671 AVRRKPYSVILLDEIEK-AHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNI 726
>sp|Q81TT4|CLPB_BACAN Chaperone protein ClpB OS=Bacillus anthracis GN=clpB PE=3 SV=1
Length = 866
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 684 KTLRIA--LAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVG 738
K LR+ L+E+V Q+EA+ +S AV R R G R +GS FLGP VG
Sbjct: 564 KLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGS-------FIFLGPTGVG 616
Query: 739 KKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQ 798
K ++A LA+ +F ++ ++I +D+S + + + + G+ + +
Sbjct: 617 KTELAKTLAQSLFDSEEQMIRIDMSEYMEKHAVSRLIGAPP-GYVGYEEGGQ-----LTE 670
Query: 799 EFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
R KPYSV+ L++++K A P V + L + + G+ TDS GR V + + TS I
Sbjct: 671 AVRRKPYSVILLDEIEK-AHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNI 726
>sp|P49574|CLPC_ODOSI ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Odontella sinensis GN=clpC PE=3 SV=1
Length = 885
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 17/226 (7%)
Query: 646 GSISAEFDAVSEGTFHNVVQSSSCSAPHTGEPFDPRDYKTLRIALAEKVGWQDEAICTIS 705
G E D V EG V+ + + + + T+ L E++ Q AI ++S
Sbjct: 477 GLARKEIDTVLEGDVAEVIAGWTGIPVNKISDSESKRLLTMEETLHERLIGQHHAIVSVS 536
Query: 706 QAVSRWRIGNGRDVGSNSKRGIW-LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764
+A+ R R+G N R I F GP VGK ++ AL+E +FGN+ +I +D+S
Sbjct: 537 KAIRRARVGL-----RNPDRPIASFIFAGPTGVGKTELTKALSEYMFGNEDSMIRLDMSE 591
Query: 765 EQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSS 824
+ + G+ + + ++KPYSVV L++++K A P V +
Sbjct: 592 YMEKHTVAKLIGSPP-GYVGYNEGGQ-----LTEAVQTKPYSVVLLDEVEK-AHPDVFNL 644
Query: 825 LTKAISTGKFTDSYGRDVSISGMIFVATST----ILKGKHSVHPQT 866
L + + G+ TDS GR + + + T+ I++ + + P+T
Sbjct: 645 LLQILDDGRLTDSKGRTIDFRNTMIIMTTNLGAKIIEKESGIKPKT 690
>sp|Q4L3I4|CLPC_STAHJ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC
PE=3 SV=1
Length = 824
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 23/176 (13%)
Query: 686 LRIALAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKKI 742
L L ++V Q++A+ +IS+AV R R G R +GS FLGP VGK ++
Sbjct: 502 LEQTLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGS-------FIFLGPTGVGKTEL 554
Query: 743 ASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVD---YIYQE 799
A ALAE +FG + +I VD+S + + G V D + ++
Sbjct: 555 ARALAESMFGEEDAMIRVDMS---------EFMEKHAVSRLVGAPPGYVGHDEGGQLTEK 605
Query: 800 FRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
R KPYSV+ ++++K A P V + L + + G TD+ GR V + + TS +
Sbjct: 606 VRRKPYSVILFDEIEK-AHPDVFNILLQVLDDGHLTDTKGRQVDFRNTVIIMTSNV 660
>sp|Q8DTC7|CLPB_STRMU Chaperone protein ClpB OS=Streptococcus mutans serotype c (strain
ATCC 700610 / UA159) GN=clpB PE=3 SV=1
Length = 860
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIW-LAFLGPDKVGKKKIASALAEIV 750
+K+ QD+A+ +SQA+ R R G N KR I FLGP VGK +A LAE++
Sbjct: 566 QKIVGQDQAVQKVSQAIIRSRAG-----IQNPKRPIGSFLFLGPTGVGKTALAKRLAEVL 620
Query: 751 FGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFL 810
FG++ +++ +D+ SE S + + G+ + + R + YS+V L
Sbjct: 621 FGSELEMVRLDM-SEYMEKHAVSRLVGPPPGYVGYEEGGQ-----LTEAVRQRLYSIVLL 674
Query: 811 EDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
++++K A P V ++L + + G+ TDS GR + I + TS I
Sbjct: 675 DEIEK-AHPDVFNTLLQVLDEGRLTDSKGRTIDFKNTILIMTSNI 718
>sp|Q7VJY3|CLPB_HELHP Chaperone protein ClpB OS=Helicobacter hepaticus (strain ATCC 51449
/ 3B1) GN=clpB PE=3 SV=1
Length = 859
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 84/180 (46%), Gaps = 31/180 (17%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKKIASAL 746
LA+ V QD+AI I++A+ R + G R +GS FLGP VGK + A L
Sbjct: 568 LAKSVVGQDDAIKAIARAIKRNKAGLNDASRPIGS-------FLFLGPTGVGKTQCAKTL 620
Query: 747 AEIVFGNKGKLIHVDVSS-------EQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQE 799
AE +F N L+ +D+S + V P + G VL + I
Sbjct: 621 AEFLFDNAKSLVRIDMSEYMEKHAVSRLVGAPPGYVGYE---------EGGVLTEAI--- 668
Query: 800 FRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGK 859
R KPYS+V ++++K A P V + L + + G+ TDS G V S I + TS I K
Sbjct: 669 -RRKPYSIVLFDEVEK-AHPDVFNILLQVLDDGRLTDSKGVSVDFSNTIIILTSNIASDK 726
>sp|Q9JYQ8|CLPB_NEIMB Chaperone protein ClpB OS=Neisseria meningitidis serogroup B
(strain MC58) GN=clpB PE=3 SV=1
Length = 859
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEI 749
L +V QDEA+ +S A+ R R G N G +L FLGP VGK ++ ALA
Sbjct: 570 LHRRVVGQDEAVRAVSDAIRRSRSGLA---DPNKPYGSFL-FLGPTGVGKTELCKALAGF 625
Query: 750 VFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVF 809
+F ++ LI +D+S + + + G Y+ ++ R KPYSV+
Sbjct: 626 LFDSEDHLIRIDMSEYMEKHAVARLIGAPP-GYVGYEEGG-----YLTEQVRRKPYSVIL 679
Query: 810 LEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
L++++K A P V + L + + G+ TD GR V + V TS I
Sbjct: 680 LDEVEK-AHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNI 724
>sp|Q9JTP9|CLPB_NEIMA Chaperone protein ClpB OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=clpB PE=3 SV=1
Length = 859
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEI 749
L +V QDEA+ +S A+ R R G N G +L FLGP VGK ++ ALA
Sbjct: 570 LHRRVVGQDEAVRAVSDAIRRSRSGLA---DPNKPYGSFL-FLGPTGVGKTELCKALAGF 625
Query: 750 VFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVF 809
+F ++ LI +D+S + + + G Y+ ++ R KPYSV+
Sbjct: 626 LFDSEDHLIRIDMSEYMEKHAVARLIGAPP-GYVGYEEGG-----YLTEQVRRKPYSVIL 679
Query: 810 LEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
L++++K A P V + L + + G+ TD GR V + V TS I
Sbjct: 680 LDEVEK-AHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNI 724
>sp|Q8EBE6|CLPB_SHEON Chaperone protein ClpB OS=Shewanella oneidensis (strain MR-1)
GN=clpB PE=3 SV=1
Length = 857
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 17/173 (9%)
Query: 686 LRIALAEKVGWQDEAICTISQAVSRWRIGNG---RDVGSNSKRGIWLAFLGPDKVGKKKI 742
+ +AL E+V Q+EA+ ++ A+ R R G R +GS FLGP VGK ++
Sbjct: 562 MEVALHERVIGQNEAVDAVANAIRRSRAGLADPNRPIGS-------FLFLGPTGVGKTEL 614
Query: 743 ASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS 802
+LA +F ++ L+ +D+S + + + + G Y+ + R
Sbjct: 615 CKSLARFLFDSESALVRIDMSEFMEKHAVSRLVGAPP-GYVGYEEGG-----YLTEAVRR 668
Query: 803 KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
KPYSV+ L++++K A P V + L + + G+ TD GR V + + TS +
Sbjct: 669 KPYSVILLDEVEK-AHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 720
>sp|Q9PKA8|CLPC_CHLMU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia muridarum (strain MoPn / Nigg) GN=clpC PE=3
SV=1
Length = 870
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 11/166 (6%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEI 749
L +KV QD+A+ +I +A+ R R G +D N G +L FLGP VGK +A +A
Sbjct: 549 LQKKVIGQDQAVASICRAIRRSRTGI-KD--PNRPMGSFL-FLGPTGVGKTLLAQQIAVE 604
Query: 750 VFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVF 809
+FG + LI VD +S+ F + G ++ ++ R +PY VV
Sbjct: 605 MFGGEDSLIQVD------MSEYMEKFAATKMMGSPPGYVGHEEGGHLTEQVRRRPYCVVL 658
Query: 810 LEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
++++K A P + + + + G+ TDS+GR + I + TS +
Sbjct: 659 FDEIEK-AHPDIMDLMLQILEQGRLTDSFGRKIDFRNTIIIMTSNL 703
>sp|O84288|CLPC_CHLTR Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=clpC PE=3
SV=1
Length = 854
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 84/171 (49%), Gaps = 11/171 (6%)
Query: 685 TLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIAS 744
TL L +KV Q +A+ +I +A+ R R G +D N G +L FLGP VGK +A
Sbjct: 527 TLETTLQKKVIGQSQAVASICRAIRRSRTGI-KD--PNRPMGSFL-FLGPTGVGKTLLAQ 582
Query: 745 ALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKP 804
+A +FG + LI VD +S+ F + G ++ ++ R +P
Sbjct: 583 QIAIEMFGGEDSLIQVD------MSEYMEKFAATKMMGSPPGYVGHEEGGHLTEQVRRRP 636
Query: 805 YSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
Y VV ++++K A P + + + + G+ TDS+GR + I + TS +
Sbjct: 637 YCVVLFDEIEK-AHPDIMDLMLQILEQGRLTDSFGRKIDFRNTIIIMTSNL 686
>sp|Q8G4X4|CLPB_BIFLO Chaperone protein ClpB OS=Bifidobacterium longum (strain NCC 2705)
GN=clpB PE=3 SV=1
Length = 889
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 11/166 (6%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEI 749
L ++V Q EAI +S AV R R G N G +L FLGP VGK ++A ALA+
Sbjct: 577 LGKRVIGQKEAIAAVSDAVRRSRAGIS---DPNRPTGSFL-FLGPTGVGKTELAKALADF 632
Query: 750 VFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVF 809
+F ++ ++ +D+S + + + + + G+ + + R +PYSVV
Sbjct: 633 LFDDEKAMVRIDMSEYMEKASVSRLIGAAP-GYVGYEQGGQ-----LTEAVRRRPYSVVL 686
Query: 810 LEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
++++K A+P + L + + G+ TD GR V I + TS +
Sbjct: 687 FDEVEK-ANPEIFDVLLQVLDDGRLTDGQGRTVDFKNTILIMTSNL 731
>sp|Q87AX8|CLPB_XYLFT Chaperone protein ClpB OS=Xylella fastidiosa (strain Temecula1 /
ATCC 700964) GN=clpB PE=3 SV=1
Length = 861
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 90/184 (48%), Gaps = 19/184 (10%)
Query: 684 KTLRIA--LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKK 741
K LR+ L +V QDEAI +S AV R R G N G +L FLGP VGK +
Sbjct: 558 KLLRMEADLGRRVVGQDEAIKVVSDAVRRSRTGLS---DPNRPSGSFL-FLGPTGVGKTE 613
Query: 742 IASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNI--DFCDCKLRGKVLVDYIYQE 799
+ ALAE +F ++ ++ +D+S + +S+ + + G Y+ +
Sbjct: 614 LCKALAEFLFDSQDAMVRIDMSE---FMEKHSVARLIGAPPGYVGYEEGG-----YLTEL 665
Query: 800 FRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGK 859
R +PYS++ L++++KA + + L + + G+ TD GR V + V TS + G
Sbjct: 666 VRRRPYSLILLDEVEKAHSDVF-NILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNL--GS 722
Query: 860 HSVH 863
H +
Sbjct: 723 HQIQ 726
>sp|P31543|CLP_TRYBB Heat shock protein 100 OS=Trypanosoma brucei brucei GN=HSP100 PE=3
SV=1
Length = 868
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 97/198 (48%), Gaps = 14/198 (7%)
Query: 686 LRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASA 745
L + L +V QDEA+ ++ A+ R R G R NS +L FLGP VGK ++ A
Sbjct: 560 LSMHLHRRVKGQDEAVERVADAIIRARAGLSR---PNSPTASFL-FLGPTGVGKTELVKA 615
Query: 746 LAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805
+A +F ++ ++ +D+S + + + G+ + + R +P+
Sbjct: 616 VAAELFDDEKHMVRIDMSEYMEQHSVSRLIGAPP-GYIGHDEGGQ-----LTEPVRRRPH 669
Query: 806 SVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHSVHPQ 865
+VV ++++K A P V + L + + G+ TDS GR V S I V TS L +H ++P+
Sbjct: 670 AVVLFDEVEK-AHPNVYNVLLQVLDDGRLTDSRGRTVDFSNTIIVMTSN-LGSEHLLNPE 727
Query: 866 TTPVKFS--EEIILGAKR 881
T + E +L A R
Sbjct: 728 ETNESYEVLRENVLAAVR 745
>sp|Q96UX5|HSP78_CANAL Heat shock protein 78, mitochondrial OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=HSP78 PE=3 SV=1
Length = 812
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 104/236 (44%), Gaps = 24/236 (10%)
Query: 629 QEANTPKLIDNKEQCFSGSISAEFDAVSEGTFHNVVQSSSCS---APHTGEPF------D 679
Q A+ P+L D ++ ++A+ S H+ V S + + TG P +
Sbjct: 429 QYASIPELQDKIQELSKNELAAK----SSNLLHDSVTSEDIAGVISKMTGIPVNNLLKGE 484
Query: 680 PRDYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGK 739
+ I L + V QDEAI +S AV R G + S ++ FLGP GK
Sbjct: 485 KDKLLDMNILLRQSVVGQDEAIDAVSDAVRLQRAG----LTSENRPIASFMFLGPTGTGK 540
Query: 740 KKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQE 799
++ +LA+ +F +K ++ D+S Q + + + + G+ + +
Sbjct: 541 TELTKSLAQFLFNDKNAVVRFDMSEFQEKHTISRLIGSPP-GYVGYEESGE-----LTEA 594
Query: 800 FRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
R KPYSVV ++ +KA P + L + + G TDS+G+ + I V TS I
Sbjct: 595 VRRKPYSVVLFDEFEKAH-PDLSKLLLQVLDEGSLTDSHGKKIDFKNTIIVMTSNI 649
>sp|Q89YY3|CLPB_BACTN Chaperone protein ClpB OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=clpB
PE=3 SV=1
Length = 862
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 95/203 (46%), Gaps = 27/203 (13%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKKIASAL 746
L ++V QDEAI ++ AV R R G R +GS FLG VGK ++A AL
Sbjct: 564 LHQRVIGQDEAIEAVADAVRRSRAGLQDPKRPIGS-------FIFLGTTGVGKTELAKAL 616
Query: 747 AEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVD---YIYQEFRSK 803
AE +F ++ + +D+S Q + + G V D + + R K
Sbjct: 617 AEFLFDDESMMTRIDMSEYQEKHSVSRLVGAPP---------GYVGYDEGGQLTEAIRRK 667
Query: 804 PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHSVH 863
PYSVV ++++K A P V + L + + G+ TD+ GR V+ I + TS + G +
Sbjct: 668 PYSVVLFDEIEK-AHPDVFNILLQVLDDGRLTDNKGRVVNFKNTIIIMTSNM--GSSYIQ 724
Query: 864 PQTTPVKFS--EEIILGAKRWQM 884
Q + S EE+I K+ M
Sbjct: 725 SQMEKLSGSNKEEVIEETKKEVM 747
>sp|Q1XDF4|CLPC_PORYE ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra yezoensis GN=clpC PE=3 SV=1
Length = 821
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIW-LAFLGPDKVGKKKIASALAEIVF 751
++ QDEA+ +S+A+ R R+G N R I F GP VGK ++ ALA F
Sbjct: 513 RIIGQDEAVVAVSRAIRRARVGL-----KNPNRPIASFIFSGPTGVGKTELTKALASYFF 567
Query: 752 GNKGKLIHVDVSSEQRVSQPNSIFDC--QNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVF 809
G++ +I +D+S + + + + + Y+ + R KPY+V+
Sbjct: 568 GSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEG--------GYLTEAVRKKPYTVIL 619
Query: 810 LEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
++++K A P + + L + + G+ TD+ GR + + + TS I
Sbjct: 620 FDEIEK-AHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMTSNI 664
>sp|P51332|CLPC_PORPU ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra purpurea GN=clpC PE=3 SV=1
Length = 821
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 17/166 (10%)
Query: 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIW-LAFLGPDKVGKKKIASALAEIVF 751
++ QDEA+ +S+A+ R R+G N R I F GP VGK ++ ALA F
Sbjct: 513 RIIGQDEAVIAVSRAIRRARVGL-----KNPNRPIASFIFSGPTGVGKTELTKALASYFF 567
Query: 752 GNKGKLIHVDVSSEQRVSQPNSIFDC--QNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVF 809
G++ +I +D+S + + + + + Y+ + R KPY+V+
Sbjct: 568 GSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEG--------GYLTEAVRKKPYTVIL 619
Query: 810 LEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
++++K A P + + L + + G+ TD+ GR + + + TS I
Sbjct: 620 FDEIEK-AHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMTSNI 664
>sp|Q9S5Z2|CLPE_LACLM ATP-dependent Clp protease ATP-binding subunit ClpE OS=Lactococcus
lactis subsp. cremoris (strain MG1363) GN=clpE PE=1 SV=2
Length = 748
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEI 749
L V QDEA+ IS+A+ R R+G G+ N G +L F+GP VGK ++A LA+
Sbjct: 442 LKAHVIGQDEAVDKISKAIRRSRVGLGK---PNRPIGSFL-FVGPTGVGKTELAKQLAKE 497
Query: 750 VFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKV--LVDY-----IYQEFRS 802
+FG+ +I D+S + +S+ KL G V Y + + R
Sbjct: 498 LFGSSESMIRFDMSE---YMEKHSV----------AKLIGAPPGYVGYEEAGQLTERVRR 544
Query: 803 KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGK 859
PYS++ L++++KA P V + + G+ TD+ GR VS + + TS GK
Sbjct: 545 NPYSLILLDEIEKAH-PDVMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSNAGTGK 600
>sp|Q7X2S8|CLPB_MEIRU Chaperone protein ClpB OS=Meiothermus ruber GN=clpB PE=3 SV=1
Length = 854
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 19/177 (10%)
Query: 684 KTLRIA--LAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVG 738
K LR+ L ++V QDEAI ++ A+ R R G R +GS FLGP VG
Sbjct: 548 KLLRLEDELHKRVVGQDEAIVAVADAIRRARAGLKDPNRPIGS-------FLFLGPTGVG 600
Query: 739 KKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQ 798
K ++A LA +F + ++ +D+S Q + + + G+ + +
Sbjct: 601 KTELAKTLAASLFDTEENMVRIDMSEYQEKHTVARLIGAPP-GYVGYEEGGQ-----LTE 654
Query: 799 EFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
R +PYSV+ ++++K A P V + L + + G+ TD GR V + + TS I
Sbjct: 655 AVRRRPYSVILFDEIEK-AHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIILTSNI 710
>sp|Q831Y7|CLPB_ENTFA Chaperone protein ClpB OS=Enterococcus faecalis (strain ATCC 700802
/ V583) GN=clpB PE=3 SV=1
Length = 868
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 17/169 (10%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKKIASAL 746
L ++V QDEA+ +S AV R R G R +GS FLGP VGK ++A AL
Sbjct: 569 LHKRVIGQDEAVDAVSDAVIRSRAGLQDPNRPLGS-------FLFLGPTGVGKTELAKAL 621
Query: 747 AEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806
AE +F ++ ++ +D+S + + + + G+ + + R PY+
Sbjct: 622 AEDLFDSEDHMVRIDMSEYMEKHAVSRLVGAPP-GYVGYEEGGQ-----LTEAVRRNPYT 675
Query: 807 VVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
+V L++++K A P V + L + + G+ TDS GR V + + TS I
Sbjct: 676 IVLLDEIEK-AHPDVFNILLQVLDDGRLTDSKGRVVDFKNTVLIMTSNI 723
>sp|Q9CI09|CLPE_LACLA ATP-dependent Clp protease ATP-binding subunit ClpE OS=Lactococcus
lactis subsp. lactis (strain IL1403) GN=clpE PE=3 SV=1
Length = 748
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEI 749
L V QDEA+ I++A+ R R+G G+ N G +L F+GP VGK ++A LA+
Sbjct: 442 LKAHVIGQDEAVDKIAKAIRRSRVGLGK---PNRPIGSFL-FVGPTGVGKTELAKQLAKE 497
Query: 750 VFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKV--LVDY-----IYQEFRS 802
+FG+ +I D+S + +S+ KL G V Y + + R
Sbjct: 498 LFGSSESMIRFDMSE---YMEKHSV----------AKLIGAPPGYVGYEEAGQLTERVRR 544
Query: 803 KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGK 859
PYS++ L++++KA P V + + G+ TD+ GR VS + + TS GK
Sbjct: 545 NPYSLILLDEIEKAH-PDVMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSNAGTGK 600
>sp|Q8CJV9|CLPB_STRCO Chaperone protein ClpB OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=clpB PE=3 SV=1
Length = 865
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 24/217 (11%)
Query: 667 SSCSAPHTGEPFDPRDYKTLRIA--LAEKVGWQDEAICTISQAVSRWRIGNG---RDVGS 721
+S + G + K LR+ L +++ Q +A+ +S AV R R G R GS
Sbjct: 545 ASWTGIPAGRLLEGETQKLLRMEDELGKRLIGQTQAVRAVSDAVRRSRAGIADPDRPTGS 604
Query: 722 NSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNI- 780
FLGP VGK ++A ALA+ +F ++ ++ +D+S S+ +S+
Sbjct: 605 -------FLFLGPTGVGKTELAKALADFLFDDERAMVRIDMSE---YSEKHSVARLVGAP 654
Query: 781 -DFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYG 839
+ + G+ + + R +PY+VV L++++K A P V L + + G+ TD G
Sbjct: 655 PGYVGYEEGGQ-----LTEAVRRRPYTVVLLDEVEK-AHPEVFDILLQVLDDGRLTDGQG 708
Query: 840 RDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEII 876
R V I V TS L ++ V P T + ++++
Sbjct: 709 RTVDFRNTILVLTSN-LGSQYLVDPTTGEAEKKQQVL 744
>sp|Q826F2|CLPB2_STRAW Chaperone protein ClpB 2 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=clpB2 PE=3 SV=1
Length = 879
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 19/177 (10%)
Query: 684 KTLRI--ALAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVG 738
K LR+ L E+V QDEA+ ++ A+ R R G R +GS FLGP VG
Sbjct: 566 KLLRLDEILRERVIGQDEAVKLVTDAIIRARSGIRDPRRPIGS-------FIFLGPTGVG 618
Query: 739 KKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQ 798
K ++A LA +F ++ ++ +D+S Q + + + + G+ + +
Sbjct: 619 KTELAKTLARTLFDSEENMVRLDMSEYQERHTVSRLMGAPP-GYVGYEEGGQ-----LTE 672
Query: 799 EFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
R KPYSVV ++++KA + ++L + + G+ TD+ GR V + + TS I
Sbjct: 673 AVRRKPYSVVLFDEIEKAHTDVF-NTLLQILDDGRITDAQGRTVDFRNTVIIMTSNI 728
>sp|Q7XL03|CLPD2_ORYSJ Chaperone protein ClpD2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPD2 PE=2 SV=2
Length = 937
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 22/185 (11%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGI-WLAFLGPDKVGKKKIASALAE 748
L ++V QD+A+ IS+AV R R+G ++ R I L F GP VGK ++ ALA
Sbjct: 619 LRKRVIGQDDAVLAISKAVKRSRVGL-----NDPDRPIATLIFCGPTGVGKTELTKALAA 673
Query: 749 IVFGNKGKLIHVDVSSEQRVSQPNSIFDC--QNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806
FG++ + +D+S + + + F + G L + + R KP++
Sbjct: 674 SYFGSESATVRLDMSEYMERHAVSKLIGSPPGYMGFGE----GGTLTEAV----RRKPFT 725
Query: 807 VVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATS-----TILKGKHS 861
VV L++++K A P + + L + G TDS GR VS + V TS +I GK S
Sbjct: 726 VVLLDEIEK-AHPDIFNILLQIFEDGHLTDSQGRRVSFKNTLIVMTSNVGSTSISNGKRS 784
Query: 862 VHPQT 866
+ QT
Sbjct: 785 IGFQT 789
>sp|Q74FF1|CLPB_GEOSL Chaperone protein ClpB OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=clpB PE=3 SV=1
Length = 865
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKKIASAL 746
L +V QDEA+ ++ A+ R R G R +GS FLGP VGK + A AL
Sbjct: 572 LITRVVGQDEALVLVANAIRRARSGLSDPNRPIGS-------FLFLGPTGVGKTETAKAL 624
Query: 747 AEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806
AE +F + ++ +D+S Q + + + G+ + + R +PYS
Sbjct: 625 AEFLFNDDQAIVRIDMSEYQEKHTVARLIGAPP-GYVGYEEGGQ-----LTEAVRRRPYS 678
Query: 807 VVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
+V ++++K A P V + L + + G+ TD GR V + + TS +
Sbjct: 679 IVLFDEIEK-AHPEVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 726
>sp|P53533|CLPB1_SYNE7 Chaperone protein ClpB 1 OS=Synechococcus elongatus (strain PCC
7942) GN=clpB1 PE=2 SV=3
Length = 874
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 19/170 (11%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIW-LAFLGPDKVGKKKIASALAE 748
L ++V Q+EA+ ++ A+ R R G S+ KR I FLGP VGK ++A ALA
Sbjct: 572 LHQRVIGQEEAVSAVADAIQRSRAGL-----SDPKRPIASFIFLGPTGVGKTELAKALAA 626
Query: 749 IVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVD---YIYQEFRSKPY 805
+F + +I +D+S + + G V D + + R +PY
Sbjct: 627 YLFDTEDAMIRIDMSEYMEKHAVSRLIGAPP---------GYVGYDEGGQLTEAVRRRPY 677
Query: 806 SVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
SV+ ++++K A P V + + + + G+ TDS GR V I + TS I
Sbjct: 678 SVILFDEIEK-AHPDVFNVMLQILDDGRVTDSRGRTVDFKNTILILTSNI 726
>sp|Q7MVE7|CLPB_PORGI Chaperone protein ClpB OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=clpB PE=3 SV=1
Length = 863
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 31/176 (17%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKKIASAL 746
L ++V QDEAI ++ AV R R G R +GS FLG VGK ++A AL
Sbjct: 564 LHKRVIGQDEAIRAVADAVRRSRAGLQDPKRPIGS-------FIFLGTTGVGKTELARAL 616
Query: 747 AEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGK--VLVDY-----IYQE 799
AE++F ++ L +D+S Q F +L G V Y + +
Sbjct: 617 AELLFDDESMLTRIDMSEYQE-------------KFSATRLIGAPPGYVGYDEGGQLTEA 663
Query: 800 FRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
R KPYSVV ++++K A P V + L + + G+ TD+ G V+ + + TS +
Sbjct: 664 IRRKPYSVVLFDEIEK-AHPDVFNVLLQVLDDGRLTDNKGHVVNFKNTLIIMTSNL 718
>sp|Q9Z8A6|CLPC_CHLPN Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2
Length = 845
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 11/166 (6%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEI 749
L KV Q++A+ +I +A+ R R G +D N G +L FLGP VGK +A +A
Sbjct: 530 LRRKVIGQNDAVTSICRAIRRSRTGI-KD--PNRPTGSFL-FLGPTGVGKSLLAQQIAIE 585
Query: 750 VFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVF 809
+FG + LI VD +S+ F + G ++ ++ R +PY VV
Sbjct: 586 MFGGEDALIQVD------MSEYMEKFAATKMMGSPPGYVGHEEGGHLTEQVRRRPYCVVL 639
Query: 810 LEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
++++K A P + + + + G+ TDS+GR V I + TS +
Sbjct: 640 FDEIEK-AHPDIMDLMLQILEQGRLTDSFGRKVDFRHAIIIMTSNL 684
>sp|O87444|CLPB_PLEBO Chaperone protein ClpB OS=Plectonema boryanum GN=clpB PE=2 SV=2
Length = 873
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEI 749
L ++V QDEA+ +S A+ R R G + ++ FLGP VGK ++A ALA
Sbjct: 573 LHQRVIGQDEAVTAVSDAIQRSRAG----LSDPNRPTASFIFLGPTGVGKTELAKALAAF 628
Query: 750 VFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVF 809
+F + ++ +D+S + + + + G+ + + R +PYSV+
Sbjct: 629 LFDTEEAMVRIDMSEYMEKHSVSRLIGAPP-GYVGYEEGGQ-----LTEAVRRRPYSVIL 682
Query: 810 LEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855
++++K A P V + + + + G+ TDS GR V I + TS I
Sbjct: 683 FDEIEK-AHPDVFNVMLQILDDGRVTDSQGRTVDFKNTIIIMTSNI 727
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396,881,634
Number of Sequences: 539616
Number of extensions: 16868005
Number of successful extensions: 49438
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 48907
Number of HSP's gapped (non-prelim): 453
length of query: 1093
length of database: 191,569,459
effective HSP length: 128
effective length of query: 965
effective length of database: 122,498,611
effective search space: 118211159615
effective search space used: 118211159615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)