Query 001355
Match_columns 1093
No_of_seqs 369 out of 2403
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 22:40:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1051 Chaperone HSP104 and r 100.0 2E-138 4E-143 1260.9 57.8 833 1-1073 1-853 (898)
2 COG0542 clpA ATP-binding subun 100.0 4E-100 8E-105 916.7 47.2 738 11-1072 1-774 (786)
3 CHL00095 clpC Clp protease ATP 100.0 5.8E-74 1.3E-78 719.9 51.0 751 10-1072 3-801 (821)
4 TIGR03345 VI_ClpV1 type VI sec 100.0 7.9E-74 1.7E-78 715.9 51.0 781 12-1063 1-841 (852)
5 PRK10865 protein disaggregatio 100.0 5.6E-71 1.2E-75 692.2 49.1 801 11-1071 5-847 (857)
6 TIGR03346 chaperone_ClpB ATP-d 100.0 2.6E-69 5.6E-74 679.6 55.7 797 12-1071 1-844 (852)
7 TIGR02639 ClpA ATP-dependent C 100.0 7.2E-66 1.6E-70 640.2 49.4 706 12-1069 1-728 (731)
8 PRK11034 clpA ATP-dependent Cl 100.0 4.5E-65 9.8E-70 626.6 47.3 709 12-1072 2-735 (758)
9 TIGR00382 clpX endopeptidase C 99.9 4.3E-25 9.4E-30 256.0 22.6 288 682-1058 67-390 (413)
10 PRK05342 clpX ATP-dependent pr 99.9 4.3E-24 9.3E-29 248.9 22.6 291 682-1058 61-384 (412)
11 COG1219 ClpX ATP-dependent pro 99.8 1.5E-20 3.3E-25 204.5 17.6 289 682-1057 51-372 (408)
12 KOG0745 Putative ATP-dependent 99.8 9.1E-20 2E-24 204.7 18.2 296 682-1056 135-512 (564)
13 PF07724 AAA_2: AAA domain (Cd 99.8 1.6E-20 3.5E-25 195.0 9.4 114 727-856 4-130 (171)
14 COG2204 AtoC Response regulato 99.8 1.6E-18 3.4E-23 202.1 17.1 224 692-1045 141-371 (464)
15 PRK05201 hslU ATP-dependent pr 99.8 4.3E-18 9.3E-23 195.6 19.0 85 974-1058 318-412 (443)
16 COG3604 FhlA Transcriptional r 99.8 1.1E-18 2.5E-23 200.1 14.2 207 693-1036 224-441 (550)
17 TIGR00390 hslU ATP-dependent p 99.8 1.5E-17 3.3E-22 191.0 19.0 84 974-1057 316-409 (441)
18 COG3829 RocR Transcriptional r 99.7 8.7E-18 1.9E-22 195.5 13.9 227 692-1049 245-476 (560)
19 TIGR00763 lon ATP-dependent pr 99.7 3.7E-16 7.9E-21 196.9 23.1 243 679-1058 307-560 (775)
20 TIGR02974 phageshock_pspF psp 99.7 2.8E-16 6.2E-21 179.4 16.2 223 694-1045 1-230 (329)
21 PRK10787 DNA-binding ATP-depen 99.7 3.2E-15 6.9E-20 187.2 23.0 240 680-1059 310-562 (784)
22 COG0466 Lon ATP-dependent Lon 99.7 1.7E-15 3.8E-20 180.1 19.0 245 679-1060 310-565 (782)
23 KOG2004 Mitochondrial ATP-depe 99.6 3.3E-15 7.2E-20 176.4 16.9 242 682-1060 401-653 (906)
24 TIGR01817 nifA Nif-specific re 99.6 1.7E-15 3.6E-20 184.0 14.5 223 692-1045 196-425 (534)
25 PRK11608 pspF phage shock prot 99.6 4.4E-15 9.5E-20 169.6 15.9 225 692-1045 6-237 (326)
26 TIGR02329 propionate_PrpR prop 99.6 5.5E-15 1.2E-19 177.8 16.2 222 692-1045 212-447 (526)
27 COG1220 HslU ATP-dependent pro 99.6 1.1E-14 2.5E-19 160.0 16.3 84 974-1057 319-412 (444)
28 PRK15424 propionate catabolism 99.6 7.7E-15 1.7E-19 176.4 16.4 145 692-855 219-372 (538)
29 PRK05022 anaerobic nitric oxid 99.6 1.4E-14 3.1E-19 174.7 17.5 223 693-1045 188-417 (509)
30 PF00158 Sigma54_activat: Sigm 99.6 3.7E-15 8.1E-20 154.5 7.9 142 694-855 1-143 (168)
31 COG1221 PspF Transcriptional r 99.6 1.6E-14 3.5E-19 166.2 13.3 147 689-855 75-223 (403)
32 PRK11388 DNA-binding transcrip 99.6 1.9E-14 4.1E-19 178.4 14.2 212 692-1036 325-539 (638)
33 PRK10820 DNA-binding transcrip 99.5 3.1E-14 6.7E-19 172.1 14.8 224 692-1045 204-434 (520)
34 CHL00181 cbbX CbbX; Provisiona 99.5 1.8E-13 3.8E-18 153.7 19.5 227 678-1059 9-261 (287)
35 KOG2170 ATPase of the AAA+ sup 99.5 4.8E-14 1E-18 153.8 12.9 152 682-856 72-225 (344)
36 PRK15429 formate hydrogenlyase 99.5 1.5E-13 3.3E-18 171.7 18.0 223 693-1045 377-606 (686)
37 PRK10923 glnG nitrogen regulat 99.5 3.2E-13 7E-18 161.4 17.4 223 693-1045 139-368 (469)
38 COG3283 TyrR Transcriptional r 99.5 3.4E-13 7.4E-18 149.2 15.6 211 691-1036 203-417 (511)
39 TIGR02880 cbbX_cfxQ probable R 99.5 9.8E-13 2.1E-17 147.6 18.1 219 682-1056 12-257 (284)
40 TIGR02915 PEP_resp_reg putativ 99.4 1.5E-12 3.2E-17 154.7 14.8 223 693-1045 140-369 (445)
41 PRK15115 response regulator Gl 99.4 4.3E-12 9.2E-17 150.7 16.6 201 726-1045 157-364 (444)
42 TIGR02881 spore_V_K stage V sp 99.4 1.8E-11 3.9E-16 135.7 20.5 212 693-1059 7-245 (261)
43 PRK11361 acetoacetate metaboli 99.4 4E-12 8.8E-17 151.3 15.9 223 693-1045 144-373 (457)
44 TIGR01818 ntrC nitrogen regula 99.4 5.5E-12 1.2E-16 150.5 15.4 223 693-1045 135-364 (463)
45 COG3284 AcoR Transcriptional a 99.4 2.2E-12 4.8E-17 153.2 11.0 188 725-1036 335-525 (606)
46 COG1222 RPT1 ATP-dependent 26S 99.3 1.6E-11 3.5E-16 137.0 16.2 131 692-855 151-299 (406)
47 PF05496 RuvB_N: Holliday junc 99.3 3.6E-11 7.9E-16 128.6 17.6 107 692-835 24-131 (233)
48 PRK13531 regulatory ATPase Rav 99.3 1.6E-11 3.5E-16 144.4 15.9 146 680-855 8-156 (498)
49 COG2256 MGS1 ATPase related to 99.3 2.3E-11 5E-16 137.8 16.3 104 692-835 24-134 (436)
50 TIGR02902 spore_lonB ATP-depen 99.3 3.9E-11 8.5E-16 145.5 16.9 128 692-835 65-205 (531)
51 PRK10365 transcriptional regul 99.2 7.9E-11 1.7E-15 139.6 16.2 201 726-1045 162-369 (441)
52 PRK14956 DNA polymerase III su 99.2 2.7E-10 5.9E-15 134.5 18.2 137 691-855 17-160 (484)
53 KOG0989 Replication factor C, 99.2 1.2E-10 2.7E-15 127.8 14.2 127 692-855 36-168 (346)
54 PRK07003 DNA polymerase III su 99.2 3E-10 6.6E-15 138.7 18.4 136 691-855 15-158 (830)
55 PRK12323 DNA polymerase III su 99.2 3E-10 6.5E-15 137.2 18.1 137 691-855 15-163 (700)
56 PRK14949 DNA polymerase III su 99.2 3.2E-10 6.9E-15 140.8 17.0 136 691-854 15-157 (944)
57 PRK14958 DNA polymerase III su 99.1 1.5E-09 3.2E-14 130.9 19.1 136 691-854 15-157 (509)
58 PRK14960 DNA polymerase III su 99.1 1.4E-09 3E-14 131.8 18.6 136 691-854 14-156 (702)
59 PLN03025 replication factor C 99.1 1.5E-09 3.4E-14 123.8 18.1 117 692-855 13-138 (319)
60 PRK07764 DNA polymerase III su 99.1 1.4E-09 3E-14 137.1 19.0 137 691-854 14-158 (824)
61 TIGR02640 gas_vesic_GvpN gas v 99.1 1.4E-09 3.1E-14 120.8 16.9 131 699-855 5-160 (262)
62 PRK14951 DNA polymerase III su 99.1 2E-09 4.4E-14 131.5 19.1 136 691-854 15-162 (618)
63 PRK07994 DNA polymerase III su 99.1 1.6E-09 3.4E-14 132.8 17.9 136 691-854 15-157 (647)
64 TIGR00635 ruvB Holliday juncti 99.1 3.1E-09 6.7E-14 120.2 19.2 105 692-833 4-109 (305)
65 PRK14959 DNA polymerase III su 99.1 2.2E-09 4.8E-14 130.5 18.7 137 691-854 15-157 (624)
66 PRK14957 DNA polymerase III su 99.1 2.4E-09 5.3E-14 129.3 19.0 136 691-854 15-157 (546)
67 TIGR02903 spore_lon_C ATP-depe 99.1 2.3E-09 5E-14 132.2 19.0 126 692-835 154-295 (615)
68 PRK13342 recombination factor 99.1 2E-09 4.4E-14 127.1 17.5 106 692-833 12-120 (413)
69 PRK00080 ruvB Holliday junctio 99.1 7.3E-09 1.6E-13 118.8 21.5 107 692-834 25-131 (328)
70 PRK08691 DNA polymerase III su 99.1 2.8E-09 6E-14 130.3 18.3 135 691-854 15-157 (709)
71 COG1223 Predicted ATPase (AAA+ 99.1 2.2E-09 4.7E-14 115.3 15.1 136 688-855 117-263 (368)
72 PRK14964 DNA polymerase III su 99.1 4.7E-09 1E-13 125.3 18.9 136 691-854 12-154 (491)
73 PRK14952 DNA polymerase III su 99.0 4.8E-09 1E-13 127.8 19.0 135 691-854 12-156 (584)
74 PRK14961 DNA polymerase III su 99.0 6.2E-09 1.3E-13 121.0 19.1 136 691-854 15-157 (363)
75 PRK14962 DNA polymerase III su 99.0 4.4E-09 9.6E-14 125.7 17.7 135 692-854 14-155 (472)
76 PRK13341 recombination factor 99.0 6.7E-09 1.5E-13 129.5 19.5 106 692-833 28-137 (725)
77 PRK14965 DNA polymerase III su 99.0 5.9E-09 1.3E-13 127.8 18.7 137 691-854 15-157 (576)
78 PRK05563 DNA polymerase III su 99.0 9.8E-09 2.1E-13 125.4 19.4 135 691-854 15-157 (559)
79 PRK03992 proteasome-activating 99.0 5.4E-09 1.2E-13 122.5 16.2 131 692-855 131-279 (389)
80 PRK07133 DNA polymerase III su 99.0 6.5E-09 1.4E-13 128.2 17.3 135 691-854 17-156 (725)
81 PRK14969 DNA polymerase III su 99.0 1E-08 2.2E-13 124.4 18.8 135 691-854 15-157 (527)
82 PRK14963 DNA polymerase III su 99.0 1.1E-08 2.3E-13 123.4 18.4 136 692-855 14-155 (504)
83 PRK06645 DNA polymerase III su 99.0 1.2E-08 2.6E-13 122.6 18.3 133 692-854 21-166 (507)
84 PRK12402 replication factor C 99.0 1.8E-08 3.9E-13 115.1 17.8 136 692-854 15-163 (337)
85 KOG0730 AAA+-type ATPase [Post 98.9 1.2E-08 2.5E-13 121.9 16.1 120 230-373 218-343 (693)
86 PRK09111 DNA polymerase III su 98.9 2.2E-08 4.9E-13 122.6 18.9 136 691-854 23-170 (598)
87 PRK05896 DNA polymerase III su 98.9 1.6E-08 3.5E-13 122.6 17.1 135 692-854 16-157 (605)
88 COG0714 MoxR-like ATPases [Gen 98.9 1.4E-08 2.9E-13 116.6 15.7 146 682-855 14-163 (329)
89 PRK14955 DNA polymerase III su 98.9 2.2E-08 4.8E-13 117.8 17.4 136 691-854 15-165 (397)
90 CHL00195 ycf46 Ycf46; Provisio 98.9 2.9E-08 6.4E-13 118.9 18.6 98 728-855 261-369 (489)
91 PRK06305 DNA polymerase III su 98.9 3.4E-08 7.4E-13 117.8 19.0 133 692-854 17-159 (451)
92 PRK07940 DNA polymerase III su 98.9 1.5E-08 3.3E-13 118.6 15.7 143 691-854 4-155 (394)
93 PF14532 Sigma54_activ_2: Sigm 98.9 2.6E-09 5.6E-14 107.2 8.0 109 695-855 1-109 (138)
94 PHA02544 44 clamp loader, smal 98.9 5.4E-08 1.2E-12 110.7 19.2 115 692-855 21-140 (316)
95 PRK14953 DNA polymerase III su 98.9 4.8E-08 1E-12 117.4 19.2 134 691-854 15-157 (486)
96 PRK14954 DNA polymerase III su 98.9 4E-08 8.6E-13 120.7 18.8 136 691-854 15-165 (620)
97 PRK08903 DnaA regulatory inact 98.9 6E-08 1.3E-12 105.2 18.0 73 728-831 44-116 (227)
98 PTZ00454 26S protease regulato 98.9 2.4E-08 5.2E-13 117.1 15.8 131 692-855 145-293 (398)
99 PRK08451 DNA polymerase III su 98.9 6.7E-08 1.5E-12 116.5 19.5 132 692-854 14-155 (535)
100 TIGR02397 dnaX_nterm DNA polym 98.9 7.8E-08 1.7E-12 110.9 19.3 135 691-854 13-155 (355)
101 TIGR02442 Cob-chelat-sub cobal 98.9 1.8E-08 4E-13 124.9 15.0 137 692-855 4-178 (633)
102 KOG0727 26S proteasome regulat 98.9 7.6E-09 1.7E-13 110.5 9.6 102 729-855 192-303 (408)
103 PF07728 AAA_5: AAA domain (dy 98.9 4.8E-09 1.1E-13 104.7 7.5 115 728-855 1-123 (139)
104 TIGR01243 CDC48 AAA family ATP 98.8 3.1E-08 6.8E-13 125.1 16.5 137 209-370 181-333 (733)
105 TIGR03689 pup_AAA proteasome A 98.8 3.8E-08 8.2E-13 118.1 15.8 52 692-751 182-241 (512)
106 PRK14971 DNA polymerase III su 98.8 9.6E-08 2.1E-12 117.8 19.7 137 691-854 16-159 (614)
107 PRK04195 replication factor C 98.8 7.7E-08 1.7E-12 116.0 18.5 115 693-855 15-139 (482)
108 TIGR03420 DnaA_homol_Hda DnaA 98.8 6.5E-08 1.4E-12 104.3 16.0 78 727-831 39-118 (226)
109 TIGR01242 26Sp45 26S proteasom 98.8 2.9E-08 6.4E-13 115.4 14.2 137 692-855 122-270 (364)
110 PRK06647 DNA polymerase III su 98.8 9.7E-08 2.1E-12 116.5 18.9 137 691-854 15-157 (563)
111 PRK14950 DNA polymerase III su 98.8 1.1E-07 2.4E-12 117.1 18.6 136 691-854 15-158 (585)
112 PRK14948 DNA polymerase III su 98.8 1.3E-07 2.9E-12 116.6 19.1 135 692-854 16-159 (620)
113 TIGR00368 Mg chelatase-related 98.8 8E-08 1.7E-12 115.6 16.8 146 692-855 192-347 (499)
114 PTZ00112 origin recognition co 98.8 4.1E-08 8.9E-13 120.6 14.1 146 691-855 754-911 (1164)
115 PRK06893 DNA replication initi 98.8 1.4E-07 3E-12 102.9 16.5 63 976-1049 144-208 (229)
116 PRK00440 rfc replication facto 98.8 2E-07 4.2E-12 105.7 18.3 116 693-855 18-141 (319)
117 COG2812 DnaX DNA polymerase II 98.8 5.8E-08 1.3E-12 115.9 14.4 138 691-855 15-158 (515)
118 KOG0734 AAA+-type ATPase conta 98.8 7.5E-08 1.6E-12 112.0 14.6 136 689-855 301-448 (752)
119 PTZ00361 26 proteosome regulat 98.8 6.5E-08 1.4E-12 114.4 14.6 130 693-855 184-331 (438)
120 PRK13407 bchI magnesium chelat 98.8 1E-07 2.2E-12 109.2 15.7 148 692-855 8-180 (334)
121 PF06309 Torsin: Torsin; Inte 98.8 3.2E-08 6.9E-13 97.3 9.8 111 682-810 15-127 (127)
122 TIGR02030 BchI-ChlI magnesium 98.8 6.1E-08 1.3E-12 111.3 13.7 147 692-854 4-182 (337)
123 KOG0736 Peroxisome assembly fa 98.8 6.4E-08 1.4E-12 116.7 14.0 98 693-817 673-777 (953)
124 smart00350 MCM minichromosome 98.8 1.3E-07 2.9E-12 114.6 17.1 158 682-855 193-352 (509)
125 PRK14970 DNA polymerase III su 98.8 3.2E-07 6.9E-12 106.8 19.6 120 691-854 16-146 (367)
126 TIGR02928 orc1/cdc6 family rep 98.7 2.4E-07 5.3E-12 107.3 18.0 144 692-855 15-174 (365)
127 CHL00176 ftsH cell division pr 98.7 2E-07 4.4E-12 115.1 18.1 104 692-815 183-286 (638)
128 CHL00081 chlI Mg-protoporyphyr 98.7 1E-07 2.2E-12 109.6 14.4 147 691-855 16-196 (350)
129 KOG2028 ATPase related to the 98.7 7E-08 1.5E-12 107.9 12.1 85 728-835 164-252 (554)
130 KOG0728 26S proteasome regulat 98.7 9E-08 2E-12 102.4 12.4 130 693-855 148-295 (404)
131 PHA02244 ATPase-like protein 98.7 1.1E-07 2.5E-12 109.0 14.1 134 693-855 97-230 (383)
132 COG0464 SpoVK ATPases of the A 98.7 1.4E-07 3.1E-12 114.1 15.4 100 728-855 278-387 (494)
133 PF00004 AAA: ATPase family as 98.7 4E-08 8.7E-13 96.1 8.7 99 729-855 1-111 (132)
134 TIGR02639 ClpA ATP-dependent C 98.7 8.9E-08 1.9E-12 120.9 14.0 122 692-855 182-320 (731)
135 PRK13765 ATP-dependent proteas 98.7 6.7E-08 1.4E-12 118.9 12.4 54 685-753 24-77 (637)
136 PRK09112 DNA polymerase III su 98.7 1.8E-07 3.9E-12 108.2 15.2 135 692-854 23-179 (351)
137 PRK08084 DNA replication initi 98.7 4.3E-07 9.4E-12 99.5 17.4 63 975-1048 149-213 (235)
138 TIGR00764 lon_rel lon-related 98.7 1.3E-07 2.8E-12 116.6 14.7 53 686-753 12-64 (608)
139 COG2255 RuvB Holliday junction 98.7 7.1E-07 1.5E-11 97.9 18.5 106 692-834 26-132 (332)
140 KOG0733 Nuclear AAA ATPase (VC 98.7 8.2E-08 1.8E-12 113.3 12.0 132 692-855 190-338 (802)
141 TIGR01241 FtsH_fam ATP-depende 98.7 2.6E-07 5.6E-12 111.9 16.7 135 692-855 55-202 (495)
142 PRK07399 DNA polymerase III su 98.7 1.6E-07 3.6E-12 107.0 14.0 138 691-854 3-161 (314)
143 PRK07471 DNA polymerase III su 98.7 1.5E-07 3.3E-12 109.4 12.9 136 692-855 19-180 (365)
144 PLN00020 ribulose bisphosphate 98.7 3.7E-07 8E-12 104.3 15.4 113 724-855 146-277 (413)
145 PTZ00111 DNA replication licen 98.6 5.2E-07 1.1E-11 113.2 17.6 156 682-855 440-609 (915)
146 PRK08727 hypothetical protein; 98.6 1.1E-06 2.5E-11 96.1 18.3 68 975-1053 144-213 (233)
147 PF13177 DNA_pol3_delta2: DNA 98.6 1.1E-07 2.4E-12 98.4 9.5 132 696-855 1-141 (162)
148 PRK05564 DNA polymerase III su 98.6 4.1E-07 8.9E-12 103.7 14.6 124 692-854 4-131 (313)
149 TIGR03345 VI_ClpV1 type VI sec 98.6 3.3E-07 7.1E-12 117.0 15.3 122 692-855 187-325 (852)
150 COG1224 TIP49 DNA helicase TIP 98.6 1.4E-06 3E-11 97.9 18.1 74 973-1061 344-417 (450)
151 TIGR02031 BchD-ChlD magnesium 98.6 2.3E-07 5E-12 114.2 12.7 114 727-855 17-136 (589)
152 TIGR00678 holB DNA polymerase 98.6 8.3E-07 1.8E-11 93.6 15.2 110 728-854 16-134 (188)
153 PF07726 AAA_3: ATPase family 98.6 2.7E-08 5.8E-13 98.1 3.3 110 728-855 1-112 (131)
154 PF01078 Mg_chelatase: Magnesi 98.6 7.3E-08 1.6E-12 102.6 6.8 141 692-856 3-159 (206)
155 KOG0733 Nuclear AAA ATPase (VC 98.6 1.8E-07 3.9E-12 110.4 10.2 100 728-855 547-656 (802)
156 COG1474 CDC6 Cdc6-related prot 98.6 4.9E-07 1.1E-11 105.0 13.6 142 692-855 17-165 (366)
157 PRK00411 cdc6 cell division co 98.6 6E-07 1.3E-11 105.2 14.2 143 691-855 29-182 (394)
158 PRK08058 DNA polymerase III su 98.5 4.4E-07 9.5E-12 104.3 12.5 136 692-855 5-149 (329)
159 COG0606 Predicted ATPase with 98.5 4.9E-07 1.1E-11 105.6 12.3 140 692-855 179-335 (490)
160 TIGR01650 PD_CobS cobaltochela 98.5 5.5E-07 1.2E-11 102.3 12.3 113 728-855 66-187 (327)
161 PRK05642 DNA replication initi 98.5 2.3E-06 5.1E-11 93.7 16.5 78 728-831 47-125 (234)
162 COG4650 RtcR Sigma54-dependent 98.5 2.4E-07 5.3E-12 100.9 8.3 130 688-836 180-313 (531)
163 KOG0729 26S proteasome regulat 98.5 4.8E-07 1E-11 97.7 9.1 129 694-855 179-325 (435)
164 COG0470 HolB ATPase involved i 98.5 9.4E-07 2E-11 100.2 11.9 136 693-855 2-148 (325)
165 KOG0652 26S proteasome regulat 98.4 1.4E-06 3.1E-11 93.9 12.1 112 693-831 172-301 (424)
166 cd00009 AAA The AAA+ (ATPases 98.4 9.9E-07 2.1E-11 86.3 10.3 129 695-855 1-129 (151)
167 PRK11034 clpA ATP-dependent Cl 98.4 1.2E-06 2.6E-11 110.1 13.6 128 693-855 187-324 (758)
168 CHL00206 ycf2 Ycf2; Provisiona 98.4 2.6E-06 5.7E-11 111.8 16.1 118 728-855 1632-1781(2281)
169 PF00308 Bac_DnaA: Bacterial d 98.4 1.1E-05 2.5E-10 87.5 18.6 101 728-855 36-139 (219)
170 TIGR00362 DnaA chromosomal rep 98.4 3.3E-06 7.1E-11 99.8 15.3 87 727-830 137-226 (405)
171 PRK10865 protein disaggregatio 98.4 1.6E-06 3.4E-11 111.1 13.5 122 692-855 178-316 (857)
172 KOG0738 AAA+-type ATPase [Post 98.4 1.1E-06 2.3E-11 99.7 10.1 112 693-830 213-341 (491)
173 TIGR01243 CDC48 AAA family ATP 98.4 4.3E-06 9.3E-11 106.0 16.8 127 693-855 179-323 (733)
174 PRK05707 DNA polymerase III su 98.4 2.4E-06 5.2E-11 98.1 13.0 131 694-855 5-145 (328)
175 PRK09862 putative ATP-dependen 98.4 1.8E-06 3.8E-11 103.9 12.3 146 692-855 191-346 (506)
176 PF06068 TIP49: TIP49 C-termin 98.4 6.2E-06 1.3E-10 94.2 15.8 64 692-764 24-87 (398)
177 PRK06871 DNA polymerase III su 98.4 1.4E-06 3E-11 99.6 10.0 134 694-855 4-146 (325)
178 PRK08769 DNA polymerase III su 98.3 1.6E-06 3.4E-11 99.1 9.8 138 693-855 5-152 (319)
179 smart00763 AAA_PrkA PrkA AAA d 98.3 6.1E-06 1.3E-10 94.9 14.6 51 693-750 52-102 (361)
180 PRK07993 DNA polymerase III su 98.3 1.7E-06 3.7E-11 99.5 9.7 134 693-855 3-147 (334)
181 CHL00095 clpC Clp protease ATP 98.3 4.6E-06 1E-10 106.8 14.5 122 692-855 179-316 (821)
182 PRK00149 dnaA chromosomal repl 98.3 6.5E-06 1.4E-10 98.6 14.7 86 728-830 150-238 (450)
183 KOG0731 AAA+-type ATPase conta 98.3 1.1E-06 2.4E-11 108.0 8.3 137 691-856 310-460 (774)
184 PRK14087 dnaA chromosomal repl 98.3 1.2E-05 2.5E-10 96.4 16.2 65 976-1049 258-324 (450)
185 PRK14086 dnaA chromosomal repl 98.3 2E-05 4.3E-10 96.2 18.0 87 728-831 316-405 (617)
186 PF05673 DUF815: Protein of un 98.3 1.7E-05 3.8E-10 86.5 15.5 122 693-855 28-150 (249)
187 PRK06964 DNA polymerase III su 98.3 4.8E-06 1E-10 95.9 11.9 136 694-855 3-171 (342)
188 KOG0726 26S proteasome regulat 98.3 1.4E-06 3.1E-11 95.2 6.9 130 693-855 186-333 (440)
189 KOG0651 26S proteasome regulat 98.3 3.2E-06 7E-11 93.6 9.5 137 692-856 132-281 (388)
190 PRK14088 dnaA chromosomal repl 98.2 1.1E-05 2.4E-10 96.4 14.6 87 728-830 132-221 (440)
191 PRK12422 chromosomal replicati 98.2 1.5E-05 3.2E-10 95.3 15.4 86 728-830 143-229 (445)
192 TIGR03346 chaperone_ClpB ATP-d 98.2 7.7E-06 1.7E-10 105.1 14.0 122 692-855 173-311 (852)
193 PRK04132 replication factor C 98.2 1.4E-05 3.1E-10 100.9 15.7 95 727-855 565-669 (846)
194 PRK06090 DNA polymerase III su 98.2 3.7E-06 8E-11 96.0 9.6 133 693-855 4-147 (319)
195 PRK10733 hflB ATP-dependent me 98.2 2E-05 4.4E-10 98.3 16.0 132 693-855 153-299 (644)
196 KOG0991 Replication factor C, 98.2 3.2E-06 7E-11 90.2 7.4 117 692-855 27-152 (333)
197 KOG0744 AAA+-type ATPase [Post 98.1 5.5E-06 1.2E-10 92.1 8.3 107 728-855 179-306 (423)
198 KOG0735 AAA+-type ATPase [Post 98.1 8.2E-06 1.8E-10 98.2 9.9 118 693-830 668-796 (952)
199 PRK11331 5-methylcytosine-spec 98.1 1.7E-05 3.6E-10 93.7 12.0 139 693-855 176-334 (459)
200 KOG0739 AAA+-type ATPase [Post 98.1 7.9E-06 1.7E-10 89.9 8.4 109 681-815 110-236 (439)
201 KOG1942 DNA helicase, TBP-inte 98.1 3.1E-05 6.8E-10 85.0 12.7 65 973-1052 350-414 (456)
202 PRK09087 hypothetical protein; 98.1 2.9E-05 6.3E-10 84.8 12.5 63 976-1049 136-200 (226)
203 PRK06620 hypothetical protein; 98.1 4.6E-05 1E-09 82.5 13.9 62 976-1048 130-193 (214)
204 KOG0743 AAA+-type ATPase [Post 98.1 5.9E-05 1.3E-09 87.9 15.1 59 729-815 238-297 (457)
205 PRK12377 putative replication 98.0 1.1E-05 2.4E-10 89.1 8.4 102 728-856 103-206 (248)
206 smart00382 AAA ATPases associa 98.0 1.1E-05 2.4E-10 77.9 7.4 121 728-855 4-125 (148)
207 PRK08699 DNA polymerase III su 98.0 1.5E-05 3.3E-10 91.5 9.5 132 694-855 3-152 (325)
208 COG1239 ChlI Mg-chelatase subu 98.0 4.9E-05 1.1E-09 88.1 13.3 150 689-855 14-196 (423)
209 COG0465 HflB ATP-dependent Zn 98.0 1.8E-05 4E-10 96.0 10.0 135 691-855 149-297 (596)
210 TIGR00602 rad24 checkpoint pro 98.0 0.00012 2.6E-09 90.6 17.0 51 692-750 84-134 (637)
211 COG1241 MCM2 Predicted ATPase 98.0 6.5E-05 1.4E-09 92.7 13.7 139 684-838 278-416 (682)
212 PRK05917 DNA polymerase III su 97.8 6.8E-05 1.5E-09 84.4 9.9 106 728-855 21-134 (290)
213 PRK08116 hypothetical protein; 97.8 4.6E-05 9.9E-10 85.3 8.5 104 727-855 115-220 (268)
214 KOG0742 AAA+-type ATPase [Post 97.8 0.00015 3.2E-09 82.9 12.4 23 728-750 386-408 (630)
215 TIGR03015 pepcterm_ATPase puta 97.8 0.00059 1.3E-08 75.6 16.0 68 977-1053 178-247 (269)
216 KOG0737 AAA+-type ATPase [Post 97.7 4.2E-05 9.1E-10 87.0 6.1 70 727-815 128-197 (386)
217 KOG0741 AAA+-type ATPase [Post 97.7 3.6E-05 7.7E-10 90.2 5.4 134 678-855 226-378 (744)
218 KOG2035 Replication factor C, 97.7 9.3E-05 2E-09 81.2 8.2 116 728-855 36-166 (351)
219 PF00493 MCM: MCM2/3/5 family 97.7 2.1E-05 4.7E-10 90.5 3.4 155 682-855 14-173 (331)
220 COG2607 Predicted ATPase (AAA+ 97.7 0.0021 4.7E-08 69.7 17.9 121 694-855 62-183 (287)
221 KOG0732 AAA+-type ATPase conta 97.7 0.00011 2.5E-09 93.2 9.7 133 692-855 265-415 (1080)
222 PRK07276 DNA polymerase III su 97.7 0.00015 3.3E-09 81.8 9.3 130 696-855 6-143 (290)
223 PRK05818 DNA polymerase III su 97.6 0.00013 2.9E-09 80.7 7.9 112 728-855 9-127 (261)
224 PF13401 AAA_22: AAA domain; P 97.6 4.5E-05 9.7E-10 74.8 3.9 101 727-831 5-114 (131)
225 PF10431 ClpB_D2-small: C-term 97.6 0.00011 2.3E-09 67.3 5.7 79 991-1069 1-80 (81)
226 COG0593 DnaA ATPase involved i 97.6 0.002 4.4E-08 75.7 17.3 49 976-1033 227-277 (408)
227 PF13173 AAA_14: AAA domain 97.6 0.00019 4.1E-09 71.1 7.7 84 728-832 4-87 (128)
228 PF01695 IstB_IS21: IstB-like 97.6 6.5E-05 1.4E-09 79.1 4.4 100 727-855 48-149 (178)
229 PRK08939 primosomal protein Dn 97.5 0.00017 3.8E-09 82.2 7.9 102 728-855 158-260 (306)
230 PRK13406 bchD magnesium chelat 97.5 0.00036 7.9E-09 85.9 11.0 103 728-845 27-134 (584)
231 PF02861 Clp_N: Clp amino term 97.5 0.00015 3.2E-09 60.4 5.3 52 23-81 1-52 (53)
232 PRK06835 DNA replication prote 97.5 0.00049 1.1E-08 79.3 10.5 104 728-856 185-289 (329)
233 KOG0478 DNA replication licens 97.5 0.0007 1.5E-08 82.0 11.9 150 682-855 419-568 (804)
234 PRK08181 transposase; Validate 97.5 0.00015 3.2E-09 81.2 5.8 100 728-856 108-209 (269)
235 PF00910 RNA_helicase: RNA hel 97.4 0.00036 7.8E-09 67.2 7.4 94 729-855 1-107 (107)
236 PRK07952 DNA replication prote 97.4 0.00058 1.3E-08 75.5 9.6 103 728-855 101-204 (244)
237 PRK06526 transposase; Provisio 97.4 0.00016 3.5E-09 80.3 4.5 99 728-856 100-201 (254)
238 KOG0730 AAA+-type ATPase [Post 97.3 0.00056 1.2E-08 82.8 8.3 102 726-855 218-329 (693)
239 COG1484 DnaC DNA replication p 97.3 0.00051 1.1E-08 76.4 7.4 101 728-855 107-208 (254)
240 KOG2680 DNA helicase TIP49, TB 97.3 0.00087 1.9E-08 74.3 8.9 65 691-764 39-103 (454)
241 PRK06921 hypothetical protein; 97.2 0.00045 9.7E-09 77.4 5.9 36 727-762 118-154 (266)
242 COG0542 clpA ATP-binding subun 97.2 0.00093 2E-08 83.5 9.1 115 692-835 170-301 (786)
243 PF03215 Rad17: Rad17 cell cyc 97.2 0.015 3.3E-07 70.9 19.2 58 973-1031 194-252 (519)
244 KOG0480 DNA replication licens 97.0 0.0018 4E-08 77.9 8.8 144 679-838 332-475 (764)
245 PF01637 Arch_ATPase: Archaeal 97.0 0.002 4.4E-08 68.8 8.4 46 977-1031 178-223 (234)
246 PRK09183 transposase/IS protei 97.0 0.0009 2E-08 74.6 5.7 101 728-856 104-206 (259)
247 KOG0740 AAA+-type ATPase [Post 97.0 0.00089 1.9E-08 78.7 5.7 71 728-817 188-258 (428)
248 KOG0735 AAA+-type ATPase [Post 96.9 0.015 3.1E-07 71.3 15.3 75 728-818 433-508 (952)
249 KOG1969 DNA replication checkp 96.9 0.0024 5.1E-08 78.1 8.7 77 728-830 328-412 (877)
250 KOG2227 Pre-initiation complex 96.9 0.0037 8.1E-08 73.3 9.8 125 691-830 149-281 (529)
251 PRK07132 DNA polymerase III su 96.9 0.0065 1.4E-07 69.2 11.6 104 728-854 20-128 (299)
252 KOG0741 AAA+-type ATPase [Post 96.8 0.0029 6.3E-08 74.8 8.2 86 726-829 538-628 (744)
253 PRK15455 PrkA family serine pr 96.8 0.0017 3.7E-08 78.7 6.3 53 691-750 75-127 (644)
254 PF12775 AAA_7: P-loop contain 96.8 0.006 1.3E-07 68.6 10.1 116 728-855 35-157 (272)
255 KOG0477 DNA replication licens 96.8 0.0016 3.5E-08 78.0 5.6 152 688-855 445-598 (854)
256 KOG0481 DNA replication licens 96.7 0.0046 1E-07 72.8 8.7 135 685-835 324-458 (729)
257 PF05729 NACHT: NACHT domain 96.7 0.0042 9.2E-08 62.8 7.6 114 728-855 2-129 (166)
258 cd01120 RecA-like_NTPases RecA 96.7 0.0078 1.7E-07 60.4 9.1 36 729-764 2-37 (165)
259 PF12774 AAA_6: Hydrolytic ATP 96.6 0.011 2.4E-07 64.9 10.7 99 729-855 35-143 (231)
260 TIGR02688 conserved hypothetic 96.5 0.011 2.3E-07 69.8 9.7 97 728-855 211-312 (449)
261 cd01131 PilT Pilus retraction 96.4 0.019 4.1E-07 61.5 10.5 96 728-833 3-100 (198)
262 KOG0990 Replication factor C, 96.4 0.0043 9.2E-08 69.9 5.4 119 693-855 42-170 (360)
263 PF13604 AAA_30: AAA domain; P 95.9 0.041 8.8E-07 58.9 9.8 92 728-831 20-119 (196)
264 COG1618 Predicted nucleotide k 95.9 0.03 6.6E-07 57.7 8.1 26 727-752 6-31 (179)
265 KOG1051 Chaperone HSP104 and r 95.9 0.00094 2E-08 84.5 -3.2 128 941-1071 762-891 (898)
266 PF00931 NB-ARC: NB-ARC domain 95.8 0.013 2.8E-07 65.5 6.0 85 727-815 20-112 (287)
267 TIGR01618 phage_P_loop phage n 95.8 0.02 4.3E-07 62.4 7.2 34 725-763 11-44 (220)
268 KOG0736 Peroxisome assembly fa 95.8 0.033 7.1E-07 68.9 9.5 104 727-855 432-542 (953)
269 PF00004 AAA: ATPase family as 95.8 0.067 1.5E-06 52.0 10.3 101 234-352 2-109 (132)
270 PRK10536 hypothetical protein; 95.8 0.052 1.1E-06 60.4 10.2 22 728-749 76-97 (262)
271 cd01129 PulE-GspE PulE/GspE Th 95.7 0.045 9.7E-07 61.4 9.8 93 728-833 82-175 (264)
272 TIGR01420 pilT_fam pilus retra 95.7 0.05 1.1E-06 63.3 10.3 97 727-833 123-221 (343)
273 COG5271 MDN1 AAA ATPase contai 95.7 0.052 1.1E-06 71.2 10.6 115 727-853 150-265 (4600)
274 PRK04296 thymidine kinase; Pro 95.6 0.063 1.4E-06 57.1 9.9 98 727-829 3-102 (190)
275 KOG0479 DNA replication licens 95.5 0.036 7.8E-07 66.5 8.2 159 683-858 292-453 (818)
276 PF13207 AAA_17: AAA domain; P 95.5 0.015 3.2E-07 56.4 4.1 32 728-764 1-32 (121)
277 PF13191 AAA_16: AAA ATPase do 95.4 0.013 2.9E-07 60.6 3.9 62 694-765 2-63 (185)
278 PF05272 VirE: Virulence-assoc 95.4 0.055 1.2E-06 58.2 8.6 97 723-855 49-149 (198)
279 PF02861 Clp_N: Clp amino term 95.4 0.0074 1.6E-07 50.2 1.4 38 133-170 12-51 (53)
280 KOG3347 Predicted nucleotide k 95.3 0.026 5.7E-07 57.4 5.4 33 728-765 9-41 (176)
281 PF00437 T2SE: Type II/IV secr 95.3 0.042 9.1E-07 61.4 7.7 94 727-833 128-222 (270)
282 PHA02774 E1; Provisional 95.3 0.059 1.3E-06 65.8 9.2 95 728-855 436-532 (613)
283 PHA00729 NTP-binding motif con 95.3 0.039 8.5E-07 60.3 6.9 24 728-751 19-42 (226)
284 TIGR00064 ftsY signal recognit 95.1 0.099 2.1E-06 58.9 9.9 84 681-764 22-110 (272)
285 PRK10867 signal recognition pa 95.1 0.23 4.9E-06 59.5 13.3 40 726-765 100-140 (433)
286 PF07693 KAP_NTPase: KAP famil 95.1 0.54 1.2E-05 53.6 15.9 39 806-854 174-212 (325)
287 COG5271 MDN1 AAA ATPase contai 95.1 0.12 2.6E-06 68.2 11.0 111 727-854 889-1007(4600)
288 PRK14974 cell division protein 95.0 0.22 4.8E-06 57.8 12.5 103 726-830 140-249 (336)
289 PF03266 NTPase_1: NTPase; In 95.0 0.021 4.7E-07 59.6 3.8 22 729-750 2-23 (168)
290 PRK06581 DNA polymerase III su 94.9 0.15 3.3E-06 56.2 10.0 107 728-855 17-128 (263)
291 cd01130 VirB11-like_ATPase Typ 94.9 0.11 2.4E-06 54.9 8.9 95 728-833 27-125 (186)
292 COG3854 SpoIIIAA ncharacterize 94.8 0.088 1.9E-06 57.2 7.8 92 728-832 139-243 (308)
293 KOG1808 AAA ATPase containing 94.8 0.084 1.8E-06 71.6 9.3 97 728-839 442-542 (1856)
294 cd01124 KaiC KaiC is a circadi 94.8 0.1 2.2E-06 54.4 8.2 35 729-763 2-36 (187)
295 TIGR01425 SRP54_euk signal rec 94.7 0.14 2.9E-06 61.2 10.0 85 681-765 46-139 (429)
296 PF03969 AFG1_ATPase: AFG1-lik 94.7 0.085 1.8E-06 61.8 8.2 103 728-857 64-169 (362)
297 PRK06696 uridine kinase; Valid 94.7 0.068 1.5E-06 58.2 7.0 57 698-764 4-60 (223)
298 PRK11889 flhF flagellar biosyn 94.7 0.33 7.2E-06 57.3 12.8 100 727-830 242-347 (436)
299 TIGR02525 plasmid_TraJ plasmid 94.7 0.13 2.9E-06 60.4 9.7 97 728-833 151-251 (372)
300 PRK13894 conjugal transfer ATP 94.5 0.29 6.2E-06 56.5 11.7 92 728-833 150-244 (319)
301 PRK00131 aroK shikimate kinase 94.4 0.044 9.5E-07 56.3 4.5 24 727-750 5-28 (175)
302 PRK12724 flagellar biosynthesi 94.4 0.41 8.8E-06 57.0 12.8 120 727-856 224-345 (432)
303 PRK12723 flagellar biosynthesi 94.3 0.33 7.2E-06 57.4 11.9 114 727-855 175-297 (388)
304 KOG1514 Origin recognition com 94.3 0.57 1.2E-05 58.0 14.0 136 681-830 380-533 (767)
305 PF08298 AAA_PrkA: PrkA AAA do 94.3 0.082 1.8E-06 61.1 6.6 52 692-750 61-112 (358)
306 TIGR02533 type_II_gspE general 94.1 0.19 4E-06 61.3 9.6 94 727-833 243-337 (486)
307 PRK13900 type IV secretion sys 94.1 0.23 5E-06 57.6 10.0 96 728-833 162-260 (332)
308 PRK10416 signal recognition pa 94.1 0.25 5.4E-06 57.0 10.1 39 726-764 114-152 (318)
309 PRK08118 topology modulation p 94.0 0.049 1.1E-06 56.8 3.9 30 729-761 4-33 (167)
310 CHL00181 cbbX CbbX; Provisiona 94.0 0.22 4.8E-06 56.6 9.4 126 231-374 60-189 (287)
311 TIGR03689 pup_AAA proteasome A 94.0 0.48 1E-05 57.9 12.8 153 210-375 186-359 (512)
312 PF05970 PIF1: PIF1-like helic 94.0 0.17 3.6E-06 59.4 8.7 118 727-855 23-150 (364)
313 COG2804 PulE Type II secretory 94.0 0.29 6.3E-06 58.9 10.5 95 727-834 259-354 (500)
314 KOG1970 Checkpoint RAD17-RFC c 93.9 0.4 8.6E-06 57.9 11.5 23 728-750 112-134 (634)
315 cd03216 ABC_Carb_Monos_I This 93.9 0.14 3.1E-06 52.8 7.1 100 727-831 27-127 (163)
316 TIGR02782 TrbB_P P-type conjug 93.9 0.3 6.4E-06 55.9 10.2 93 728-833 134-229 (299)
317 PRK13947 shikimate kinase; Pro 93.9 0.061 1.3E-06 55.5 4.3 31 728-761 3-33 (171)
318 TIGR02524 dot_icm_DotB Dot/Icm 93.9 0.26 5.7E-06 57.7 9.9 99 727-833 135-238 (358)
319 PRK00771 signal recognition pa 93.9 0.26 5.7E-06 59.1 10.0 40 726-765 95-134 (437)
320 PF13671 AAA_33: AAA domain; P 93.8 0.044 9.4E-07 54.6 3.0 23 728-750 1-23 (143)
321 TIGR00959 ffh signal recogniti 93.8 0.32 6.8E-06 58.3 10.4 41 725-765 98-139 (428)
322 PF13479 AAA_24: AAA domain 93.7 0.19 4E-06 54.5 7.7 21 726-746 3-23 (213)
323 TIGR01359 UMP_CMP_kin_fam UMP- 93.7 0.063 1.4E-06 56.0 3.9 31 729-764 2-32 (183)
324 TIGR02880 cbbX_cfxQ probable R 93.6 0.36 7.7E-06 54.8 10.2 132 231-380 59-193 (284)
325 PHA01747 putative ATP-dependen 93.6 0.25 5.3E-06 57.3 8.6 101 725-855 189-300 (425)
326 TIGR02788 VirB11 P-type DNA tr 93.6 0.25 5.5E-06 56.6 8.9 94 728-832 146-242 (308)
327 PRK03839 putative kinase; Prov 93.5 0.069 1.5E-06 55.9 3.9 23 728-750 2-24 (180)
328 PF01583 APS_kinase: Adenylyls 93.5 0.1 2.2E-06 54.1 4.9 38 727-764 3-40 (156)
329 TIGR02538 type_IV_pilB type IV 93.3 0.31 6.7E-06 60.5 9.7 93 727-833 317-411 (564)
330 PF13238 AAA_18: AAA domain; P 93.3 0.066 1.4E-06 51.8 3.1 22 729-750 1-22 (129)
331 PRK05541 adenylylsulfate kinas 93.3 0.11 2.3E-06 54.2 4.9 36 727-762 8-43 (176)
332 PRK03846 adenylylsulfate kinas 93.3 0.3 6.6E-06 52.1 8.4 37 727-763 25-61 (198)
333 TIGR03499 FlhF flagellar biosy 93.2 0.44 9.6E-06 54.0 9.9 83 680-764 150-234 (282)
334 PRK13851 type IV secretion sys 93.2 0.28 6.1E-06 57.1 8.5 97 728-833 164-261 (344)
335 KOG0482 DNA replication licens 93.1 0.24 5.2E-06 58.9 7.8 136 682-836 332-470 (721)
336 cd00464 SK Shikimate kinase (S 93.1 0.095 2.1E-06 52.8 4.0 22 729-750 2-23 (154)
337 PRK08533 flagellar accessory p 93.0 0.27 5.8E-06 54.1 7.7 37 727-763 25-61 (230)
338 PRK00625 shikimate kinase; Pro 93.0 0.1 2.2E-06 54.9 4.2 23 728-750 2-24 (173)
339 cd02019 NK Nucleoside/nucleoti 92.9 0.16 3.4E-06 45.0 4.6 22 729-750 2-23 (69)
340 PRK13833 conjugal transfer pro 92.9 0.61 1.3E-05 53.9 10.6 92 728-833 146-240 (323)
341 PRK14532 adenylate kinase; Pro 92.9 0.1 2.2E-06 54.9 4.0 32 728-764 2-33 (188)
342 COG0529 CysC Adenylylsulfate k 92.8 0.12 2.7E-06 54.2 4.4 38 727-764 24-61 (197)
343 PF13191 AAA_16: AAA ATPase do 92.8 0.24 5.2E-06 51.2 6.7 46 209-254 3-51 (185)
344 PRK03992 proteasome-activating 92.8 0.97 2.1E-05 53.6 12.5 142 209-375 134-296 (389)
345 PRK07261 topology modulation p 92.8 0.11 2.3E-06 54.4 4.0 30 729-761 3-32 (171)
346 PRK06762 hypothetical protein; 92.7 0.14 3.1E-06 52.6 4.8 33 727-762 3-35 (166)
347 cd02021 GntK Gluconate kinase 92.7 0.11 2.3E-06 52.5 3.7 22 729-750 2-23 (150)
348 cd00227 CPT Chloramphenicol (C 92.7 0.11 2.3E-06 54.4 3.8 33 728-763 4-36 (175)
349 TIGR01313 therm_gnt_kin carboh 92.6 0.097 2.1E-06 53.7 3.4 22 729-750 1-22 (163)
350 TIGR02881 spore_V_K stage V sp 92.5 0.59 1.3E-05 52.1 9.7 125 231-373 43-170 (261)
351 PRK06067 flagellar accessory p 92.5 0.27 5.9E-06 53.7 6.9 38 727-764 26-63 (234)
352 PF05621 TniB: Bacterial TniB 92.5 0.75 1.6E-05 52.4 10.4 136 685-830 27-173 (302)
353 PLN02200 adenylate kinase fami 92.5 0.18 3.9E-06 55.6 5.5 36 724-764 41-76 (234)
354 PRK06217 hypothetical protein; 92.4 0.12 2.7E-06 54.3 4.0 23 728-750 3-25 (183)
355 PRK10436 hypothetical protein; 92.4 0.55 1.2E-05 56.9 9.8 94 727-833 219-313 (462)
356 PRK06547 hypothetical protein; 92.4 0.17 3.7E-06 53.2 4.9 24 727-750 16-39 (172)
357 PF12780 AAA_8: P-loop contain 92.3 0.55 1.2E-05 52.9 9.1 84 727-835 32-119 (268)
358 PRK08233 hypothetical protein; 92.3 0.17 3.7E-06 52.4 4.8 35 727-763 4-38 (182)
359 COG0563 Adk Adenylate kinase a 92.3 0.12 2.7E-06 54.6 3.7 31 729-764 3-33 (178)
360 CHL00176 ftsH cell division pr 92.2 0.81 1.8E-05 57.6 11.3 139 212-375 192-347 (638)
361 PRK08154 anaerobic benzoate ca 92.2 0.32 7E-06 55.8 7.3 32 727-761 134-165 (309)
362 PRK14531 adenylate kinase; Pro 92.2 0.14 2.9E-06 54.1 3.9 32 728-764 4-35 (183)
363 PLN03210 Resistant to P. syrin 92.0 0.91 2E-05 61.2 12.1 49 693-752 185-233 (1153)
364 TIGR02858 spore_III_AA stage I 91.9 0.31 6.7E-06 54.9 6.5 25 728-752 113-137 (270)
365 cd01428 ADK Adenylate kinase ( 91.9 0.16 3.6E-06 53.2 4.1 31 729-764 2-32 (194)
366 PRK13949 shikimate kinase; Pro 91.9 0.15 3.2E-06 53.3 3.7 23 728-750 3-25 (169)
367 CHL00195 ycf46 Ycf46; Provisio 91.9 0.75 1.6E-05 56.1 10.2 125 230-380 259-392 (489)
368 PRK00889 adenylylsulfate kinas 91.8 0.23 5E-06 51.7 5.0 37 727-763 5-41 (175)
369 cd02020 CMPK Cytidine monophos 91.8 0.17 3.7E-06 50.4 3.8 22 729-750 2-23 (147)
370 COG0703 AroK Shikimate kinase 91.7 0.14 3E-06 53.7 3.2 28 728-758 4-31 (172)
371 PRK14530 adenylate kinase; Pro 91.7 0.18 3.8E-06 54.6 4.2 32 728-764 5-36 (215)
372 cd02027 APSK Adenosine 5'-phos 91.7 0.19 4.2E-06 51.3 4.2 34 729-762 2-35 (149)
373 COG1373 Predicted ATPase (AAA+ 91.6 0.69 1.5E-05 55.0 9.4 81 728-833 39-121 (398)
374 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.6 0.5 1.1E-05 47.9 7.1 87 728-831 28-115 (144)
375 PRK13948 shikimate kinase; Pro 91.5 0.22 4.8E-06 52.9 4.6 32 727-761 11-42 (182)
376 cd03247 ABCC_cytochrome_bd The 91.5 0.41 8.9E-06 50.0 6.6 102 728-831 30-143 (178)
377 PF09848 DUF2075: Uncharacteri 91.5 0.52 1.1E-05 55.0 8.0 23 728-750 3-25 (352)
378 cd03246 ABCC_Protease_Secretio 91.4 0.61 1.3E-05 48.6 7.7 101 728-831 30-141 (173)
379 cd03243 ABC_MutS_homologs The 91.4 0.47 1E-05 50.7 7.1 23 728-750 31-53 (202)
380 TIGR02653 Lon_rel_chp conserve 91.4 0.48 1E-05 58.8 7.8 93 976-1074 387-480 (675)
381 PRK03731 aroL shikimate kinase 91.4 0.22 4.8E-06 51.5 4.3 31 728-761 4-34 (171)
382 PF06048 DUF927: Domain of unk 91.3 1.1 2.3E-05 51.0 10.1 115 682-832 155-269 (286)
383 COG1485 Predicted ATPase [Gene 91.1 0.56 1.2E-05 54.2 7.5 149 685-859 14-174 (367)
384 TIGR03574 selen_PSTK L-seryl-t 91.1 0.22 4.7E-06 55.1 4.2 33 729-761 2-34 (249)
385 PRK09435 membrane ATPase/prote 91.1 1.7 3.7E-05 50.5 11.6 37 727-763 57-95 (332)
386 cd03115 SRP The signal recogni 91.1 0.29 6.4E-06 50.7 5.0 38 728-765 2-39 (173)
387 cd03228 ABCC_MRP_Like The MRP 91.1 0.72 1.6E-05 47.9 7.9 103 727-831 29-141 (171)
388 PRK07667 uridine kinase; Provi 91.1 0.46 1E-05 50.6 6.5 38 727-764 18-55 (193)
389 TIGR00150 HI0065_YjeE ATPase, 91.0 0.4 8.6E-06 48.4 5.6 41 699-750 6-46 (133)
390 PRK09270 nucleoside triphospha 91.0 0.66 1.4E-05 50.7 7.8 27 727-753 34-60 (229)
391 PTZ00088 adenylate kinase 1; P 91.0 0.26 5.6E-06 54.2 4.5 33 727-764 7-39 (229)
392 TIGR01360 aden_kin_iso1 adenyl 90.9 0.18 4E-06 52.5 3.3 31 728-763 5-35 (188)
393 PRK14722 flhF flagellar biosyn 90.9 0.98 2.1E-05 53.2 9.5 25 726-750 137-161 (374)
394 PRK00279 adk adenylate kinase; 90.8 0.24 5.2E-06 53.6 4.1 31 729-764 3-33 (215)
395 PF04851 ResIII: Type III rest 90.8 0.3 6.6E-06 50.1 4.7 46 695-752 6-51 (184)
396 PRK05480 uridine/cytidine kina 90.8 0.28 6.2E-06 52.6 4.6 24 727-750 7-30 (209)
397 PRK05703 flhF flagellar biosyn 90.8 0.65 1.4E-05 55.7 8.1 162 679-855 176-342 (424)
398 TIGR00235 udk uridine kinase. 90.6 0.29 6.2E-06 52.6 4.4 27 725-751 5-31 (207)
399 cd03222 ABC_RNaseL_inhibitor T 90.6 0.75 1.6E-05 48.6 7.4 91 727-831 26-116 (177)
400 PRK05057 aroK shikimate kinase 90.5 0.28 6.1E-06 51.3 4.2 31 728-761 6-36 (172)
401 COG2805 PilT Tfp pilus assembl 90.4 0.86 1.9E-05 51.7 8.0 98 728-835 127-226 (353)
402 TIGR01351 adk adenylate kinase 90.4 0.22 4.8E-06 53.6 3.4 31 729-764 2-32 (210)
403 TIGR02237 recomb_radB DNA repa 90.4 0.38 8.2E-06 51.4 5.2 38 727-764 13-50 (209)
404 TIGR02322 phosphon_PhnN phosph 90.3 0.24 5.2E-06 51.6 3.5 24 728-751 3-26 (179)
405 PRK02496 adk adenylate kinase; 90.3 0.3 6.4E-06 51.3 4.1 23 728-750 3-25 (184)
406 cd01121 Sms Sms (bacterial rad 90.2 0.4 8.7E-06 56.5 5.6 84 727-815 83-169 (372)
407 cd03230 ABC_DR_subfamily_A Thi 90.2 0.87 1.9E-05 47.4 7.5 103 727-831 27-140 (173)
408 cd02023 UMPK Uridine monophosp 90.2 0.31 6.8E-06 51.7 4.3 22 729-750 2-23 (198)
409 TIGR01448 recD_rel helicase, p 90.1 0.44 9.5E-06 60.9 6.1 94 728-831 340-442 (720)
410 TIGR03819 heli_sec_ATPase heli 90.0 1.1 2.3E-05 52.3 8.8 95 728-833 180-278 (340)
411 cd03280 ABC_MutS2 MutS2 homolo 89.9 0.77 1.7E-05 49.1 7.1 21 728-748 30-50 (200)
412 PRK13946 shikimate kinase; Pro 89.9 0.27 6E-06 51.8 3.5 31 728-761 12-42 (184)
413 PF01745 IPT: Isopentenyl tran 89.9 0.36 7.7E-06 52.3 4.3 33 728-763 3-35 (233)
414 PF02562 PhoH: PhoH-like prote 89.8 0.85 1.8E-05 49.4 7.2 24 728-751 21-44 (205)
415 smart00534 MUTSac ATPase domai 89.7 0.88 1.9E-05 48.1 7.2 22 729-750 2-23 (185)
416 PF13245 AAA_19: Part of AAA d 89.7 0.47 1E-05 43.1 4.4 23 728-750 12-35 (76)
417 PRK00091 miaA tRNA delta(2)-is 89.6 0.37 8E-06 55.3 4.5 33 727-762 5-37 (307)
418 cd03283 ABC_MutS-like MutS-lik 89.6 0.99 2.1E-05 48.5 7.5 23 728-750 27-49 (199)
419 PLN02165 adenylate isopentenyl 89.5 0.34 7.4E-06 56.0 4.1 23 728-750 45-67 (334)
420 PRK10875 recD exonuclease V su 89.5 1.7 3.6E-05 54.6 10.4 27 804-831 265-291 (615)
421 cd03223 ABCD_peroxisomal_ALDP 89.4 1.3 2.8E-05 45.9 8.1 101 728-831 29-136 (166)
422 PLN02674 adenylate kinase 89.4 0.6 1.3E-05 51.9 5.8 32 728-764 33-64 (244)
423 cd00267 ABC_ATPase ABC (ATP-bi 89.4 0.93 2E-05 46.3 6.9 98 728-831 27-125 (157)
424 PF00406 ADK: Adenylate kinase 89.3 0.28 6.1E-06 49.8 2.9 29 731-764 1-29 (151)
425 PRK05800 cobU adenosylcobinami 89.3 0.36 7.8E-06 50.6 3.8 33 728-763 3-35 (170)
426 cd02028 UMPK_like Uridine mono 89.3 0.41 8.9E-06 50.5 4.2 36 729-764 2-37 (179)
427 cd03227 ABC_Class2 ABC-type Cl 89.2 1.4 3.1E-05 45.4 8.2 98 728-831 23-126 (162)
428 PF00448 SRP54: SRP54-type pro 89.1 0.48 1E-05 50.8 4.7 115 727-855 2-125 (196)
429 KOG1968 Replication factor C, 89.1 0.28 6.1E-06 63.1 3.4 34 728-764 359-392 (871)
430 PRK04220 2-phosphoglycerate ki 89.1 0.93 2E-05 51.8 7.1 25 726-750 92-116 (301)
431 TIGR01241 FtsH_fam ATP-depende 89.1 1.7 3.7E-05 53.1 10.0 138 213-375 65-219 (495)
432 PF13086 AAA_11: AAA domain; P 89.0 0.53 1.1E-05 50.2 5.0 23 728-750 19-41 (236)
433 TIGR00554 panK_bact pantothena 89.0 1.8 3.9E-05 49.3 9.4 27 725-751 61-87 (290)
434 PRK09361 radB DNA repair and r 89.0 0.56 1.2E-05 50.9 5.1 37 727-763 24-60 (225)
435 COG4088 Predicted nucleotide k 88.9 0.31 6.8E-06 52.3 2.9 25 728-752 3-27 (261)
436 cd01672 TMPK Thymidine monopho 88.8 0.45 9.7E-06 49.8 4.2 25 728-752 2-26 (200)
437 PRK12726 flagellar biosynthesi 88.8 1.8 3.8E-05 51.2 9.2 39 727-765 207-245 (407)
438 TIGR00455 apsK adenylylsulfate 88.8 0.57 1.2E-05 49.2 4.9 37 727-763 19-55 (184)
439 COG1102 Cmk Cytidylate kinase 88.8 0.43 9.3E-06 49.5 3.8 23 728-750 2-24 (179)
440 PRK14528 adenylate kinase; Pro 88.8 0.46 1E-05 50.3 4.3 32 728-764 3-34 (186)
441 cd03282 ABC_MSH4_euk MutS4 hom 88.7 1.1 2.4E-05 48.4 7.0 23 728-750 31-53 (204)
442 PRK05537 bifunctional sulfate 88.6 0.85 1.8E-05 56.7 6.9 39 725-763 391-430 (568)
443 PRK13764 ATPase; Provisional 88.4 1.6 3.4E-05 54.5 9.1 26 728-753 259-284 (602)
444 PRK10078 ribose 1,5-bisphospho 88.4 0.44 9.4E-06 50.3 3.7 23 728-750 4-26 (186)
445 PRK14527 adenylate kinase; Pro 88.4 0.44 9.5E-06 50.5 3.8 24 727-750 7-30 (191)
446 PLN02840 tRNA dimethylallyltra 88.4 0.5 1.1E-05 56.3 4.5 33 727-762 22-54 (421)
447 TIGR01447 recD exodeoxyribonuc 88.4 2.2 4.8E-05 53.3 10.3 27 804-831 259-285 (586)
448 PF01443 Viral_helicase1: Vira 88.3 0.82 1.8E-05 49.4 5.9 21 729-749 1-21 (234)
449 PRK04040 adenylate kinase; Pro 88.3 0.55 1.2E-05 50.0 4.5 23 728-750 4-26 (188)
450 PHA02624 large T antigen; Prov 88.3 1.1 2.3E-05 55.6 7.3 33 728-763 433-465 (647)
451 PRK00411 cdc6 cell division co 88.3 3.1 6.6E-05 49.0 11.1 130 209-352 33-180 (394)
452 PRK05439 pantothenate kinase; 88.2 1.9 4.2E-05 49.6 9.1 26 725-750 85-110 (311)
453 cd03229 ABC_Class3 This class 88.2 1.5 3.3E-05 45.8 7.7 103 727-831 27-145 (178)
454 COG1643 HrpA HrpA-like helicas 88.2 2 4.3E-05 55.5 10.0 26 728-753 67-93 (845)
455 PRK14729 miaA tRNA delta(2)-is 88.2 0.5 1.1E-05 54.0 4.3 31 728-762 6-36 (300)
456 TIGR02012 tigrfam_recA protein 88.2 0.61 1.3E-05 53.8 5.0 88 727-815 56-144 (321)
457 cd01394 radB RadB. The archaea 88.2 0.67 1.5E-05 49.9 5.1 37 727-763 20-56 (218)
458 PRK00300 gmk guanylate kinase; 88.1 0.43 9.4E-06 50.8 3.6 24 727-750 6-29 (205)
459 PRK11823 DNA repair protein Ra 88.1 0.69 1.5E-05 55.9 5.6 84 727-815 81-167 (446)
460 PRK13975 thymidylate kinase; P 88.0 0.47 1E-05 50.1 3.7 23 728-750 4-26 (196)
461 cd00544 CobU Adenosylcobinamid 87.9 0.6 1.3E-05 49.0 4.3 81 729-815 2-84 (169)
462 PRK14526 adenylate kinase; Pro 87.7 0.51 1.1E-05 51.2 3.8 31 729-764 3-33 (211)
463 PF00485 PRK: Phosphoribulokin 87.7 0.45 9.8E-06 50.5 3.4 23 729-751 2-24 (194)
464 TIGR00174 miaA tRNA isopenteny 87.6 0.55 1.2E-05 53.4 4.1 31 729-762 2-32 (287)
465 PF13555 AAA_29: P-loop contai 87.6 0.71 1.5E-05 40.5 3.8 27 728-754 25-51 (62)
466 TIGR02928 orc1/cdc6 family rep 87.4 4.3 9.3E-05 47.2 11.5 132 209-352 18-172 (365)
467 PF06414 Zeta_toxin: Zeta toxi 87.2 0.76 1.6E-05 49.1 4.7 39 725-765 14-52 (199)
468 COG3267 ExeA Type II secretory 87.2 1.3 2.7E-05 49.3 6.4 99 728-830 53-156 (269)
469 PLN02459 probable adenylate ki 87.2 0.8 1.7E-05 51.3 5.0 33 727-764 30-62 (261)
470 cd03281 ABC_MSH5_euk MutS5 hom 87.1 2 4.4E-05 46.6 8.0 22 728-749 31-52 (213)
471 TIGR03263 guanyl_kin guanylate 87.1 0.44 9.5E-06 49.6 2.8 23 728-750 3-25 (180)
472 cd02025 PanK Pantothenate kina 87.1 0.77 1.7E-05 50.1 4.8 23 729-751 2-24 (220)
473 COG0324 MiaA tRNA delta(2)-iso 87.0 0.69 1.5E-05 52.9 4.5 33 728-763 5-37 (308)
474 PRK06995 flhF flagellar biosyn 86.9 2.1 4.6E-05 52.0 8.8 24 727-750 257-280 (484)
475 PLN02199 shikimate kinase 86.9 1.3 2.9E-05 50.4 6.6 29 728-759 104-132 (303)
476 TIGR00750 lao LAO/AO transport 86.9 2.7 5.9E-05 48.0 9.3 37 727-763 35-71 (300)
477 KOG0922 DEAH-box RNA helicase 86.8 3 6.6E-05 51.6 9.9 29 728-756 68-97 (674)
478 PRK12727 flagellar biosynthesi 86.8 2.1 4.5E-05 52.5 8.6 39 726-764 350-390 (559)
479 PRK04182 cytidylate kinase; Pr 86.8 0.68 1.5E-05 47.8 4.0 23 728-750 2-24 (180)
480 TIGR00416 sms DNA repair prote 86.7 0.89 1.9E-05 55.0 5.5 84 727-815 95-181 (454)
481 cd00983 recA RecA is a bacter 86.7 0.87 1.9E-05 52.6 5.1 88 727-815 56-144 (325)
482 TIGR02173 cyt_kin_arch cytidyl 86.6 0.6 1.3E-05 47.8 3.5 23 728-750 2-24 (171)
483 PRK00698 tmk thymidylate kinas 86.6 0.66 1.4E-05 49.1 3.9 24 727-750 4-27 (205)
484 TIGR00041 DTMP_kinase thymidyl 86.5 0.85 1.8E-05 48.1 4.6 26 727-752 4-29 (195)
485 PF05707 Zot: Zonular occluden 86.5 2.1 4.6E-05 45.5 7.7 35 728-763 2-37 (193)
486 PTZ00454 26S protease regulato 86.4 4.8 0.00011 48.0 11.3 121 230-375 179-310 (398)
487 PRK15453 phosphoribulokinase; 86.3 1 2.2E-05 51.0 5.2 39 727-765 6-44 (290)
488 cd00071 GMPK Guanosine monopho 86.3 0.55 1.2E-05 47.3 2.9 22 729-750 2-23 (137)
489 PHA02530 pseT polynucleotide k 86.1 0.55 1.2E-05 53.2 3.1 33 728-764 4-36 (300)
490 PF05621 TniB: Bacterial TniB 86.1 7.5 0.00016 44.5 12.0 152 211-378 41-211 (302)
491 PRK14529 adenylate kinase; Pro 86.1 0.58 1.3E-05 51.3 3.1 22 729-750 3-24 (223)
492 TIGR02768 TraA_Ti Ti-type conj 86.0 1.4 3E-05 56.7 6.9 91 728-830 370-464 (744)
493 cd01983 Fer4_NifH The Fer4_Nif 86.0 0.99 2.2E-05 40.8 4.2 33 729-761 2-34 (99)
494 COG0464 SpoVK ATPases of the A 85.9 5.2 0.00011 48.9 11.6 134 212-370 251-397 (494)
495 cd00009 AAA The AAA+ (ATPases 85.7 9.1 0.0002 36.8 11.2 92 210-317 2-96 (151)
496 PRK14738 gmk guanylate kinase; 85.6 0.74 1.6E-05 49.6 3.6 24 726-749 13-36 (206)
497 COG4608 AppF ABC-type oligopep 85.6 1.9 4E-05 48.4 6.8 101 728-831 41-154 (268)
498 PRK06731 flhF flagellar biosyn 85.6 5.6 0.00012 45.0 10.7 100 727-830 76-181 (270)
499 TIGR03878 thermo_KaiC_2 KaiC d 85.5 1 2.2E-05 50.4 4.8 38 726-763 36-73 (259)
500 COG1936 Predicted nucleotide k 85.5 0.65 1.4E-05 48.7 3.0 20 729-748 3-22 (180)
No 1
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-138 Score=1260.92 Aligned_cols=833 Identities=32% Similarity=0.422 Sum_probs=656.0
Q ss_pred CCcchhhhhhhcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHh
Q 001355 1 MRTLVTLARQCLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVA 80 (1093)
Q Consensus 1 m~~~~~~~~q~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~a 80 (1093)
||||++|+|||||++|+.||++|+++||||||+||||||+++|||++|+|+||+||.++| |+||+|||+||+|+
T Consensus 1 m~t~~~t~~q~lT~~Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~t~~lr~ac~~~~------~l~~ralelc~~v~ 74 (898)
T KOG1051|consen 1 MRTGVYTVQQTLTEEAATVLKQAVTEARRRGHAQVTPLHVASTLLSSPTGILRRACIKSH------PLQCRALELCFNVS 74 (898)
T ss_pred CCCcccchHhhhCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHhcC------cccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999996 49999999999999
Q ss_pred hccCCCCCCCCCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCchhhhhhcccCCCc
Q 001355 81 FDRLPSSKSVEFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDPMASRVFGEAGFLS 160 (1093)
Q Consensus 81 L~rlp~~~~~~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp~vsrv~~eagf~s 160 (1093)
|+|||++.+ |++||+|||||||+||||||++.+ +||| +||||++|||++|||||+|+||||||||+|
T Consensus 75 l~rlpt~~~---p~~sn~l~aalkr~qa~qrr~~~~-------~~~~---~vkvE~~~li~silDdp~vsrv~reag~~s 141 (898)
T KOG1051|consen 75 LNRLPTSYG---PPVSNALMAALKRAQAHQRRGCEE-------QQQQ---AVKVELEQLILSILDDPSVSRVMREAGFSS 141 (898)
T ss_pred HHhccCCCC---CccchHhHHHHHHHHHHHHhcchh-------hccc---hhhHhHHhhheeeecCchHHHHHHHhcCCh
Confidence 999999865 999999999999999999999853 1223 789999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCCCCCCCCCCCccccCC-CCCCC-CCCCCCCCCCCCCc-hhhHHHHHHHhhcccccCCCCcEEec
Q 001355 161 RDIKLAIIQPSVTQFPPRLSLTRCPPIFLYNL-TDSFP-GRAGLKLPFGPDDV-DENCRRIGEVLAGRDEKKGKNPLLVG 237 (1093)
Q Consensus 161 ~~vk~~i~~~~~~~~~~~~~~~~~~~~~~~n~-~~~~~-~~~~~~~p~~~~~r-deeirrv~~vL~R~~~~~k~NpvlVG 237 (1093)
++||.+|++++..... .+.+...++.|++++ ++..| ++.|+.+|+ +|| ||||||||+||+| ||||||||||
T Consensus 142 ~~vK~~ve~~~g~~~~-~~~~~~~~~~~L~~~~~dl~p~a~~gkldPv--igr~deeirRvi~iL~R---rtk~NPvLVG 215 (898)
T KOG1051|consen 142 SAVKSAVEQPVGQFRS-PSRGPLWPLLFLENYGTDLTPRARQGKLDPV--IGRHDEEIRRVIEILSR---KTKNNPVLVG 215 (898)
T ss_pred HHHHHHHHhhccccCC-CCcCCccchhHHHhcccccChhhhccCCCCc--cCCchHHHHHHHHHHhc---cCCCCceEEe
Confidence 9999999998632211 111113356676764 33333 455899999 577 9999999999999 9999999999
Q ss_pred cchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcc
Q 001355 238 VCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGEL 314 (1093)
Q Consensus 238 e~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl 314 (1093)
|||++ .++|+|++|.+| +||+.|++.++++|+ |+.+++|+++|||||.|||+|+++|++ +++|||||||||
T Consensus 216 ~~gvgktaiv~gla~ri~~G---~vp~~l~~~~l~~l~--~g~l~aGa~~rge~E~rlk~l~k~v~~-~~~gvILfigel 289 (898)
T KOG1051|consen 216 EPGVGKTAIVEGLAQRIATG---DVPETLKDKKLIALD--FGSLVAGAKRRGEFEERLKELLKEVES-GGGGVILFLGEL 289 (898)
T ss_pred cCCCCchhHHHHHHHHhhcC---CCCccccccceEEEE--hhhcccCcccchHHHHHHHHHHHHHhc-CCCcEEEEecce
Confidence 99998 499999999986 999999999999999 999999999999999999999999998 489999999999
Q ss_pred hhhhcCCCcchHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCCCCcceeeeccCCCCCC-------
Q 001355 315 KVLVSDSVSTEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDLQLLPIHWKSSLM------- 386 (1093)
Q Consensus 315 ~~~v~~~~~~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~Lq~v~i~~~~sl~------- 386 (1093)
||+|++++.+|++++ .+||+| +++|+|||||| ||++||+||++|||+||++|+||+|+||..+.+.
T Consensus 290 h~lvg~g~~~~~~d~-----~nlLkp~L~rg~l~~IGa-tT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 290 HWLVGSGSNYGAIDA-----ANLLKPLLARGGLWCIGA-TTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLS 363 (898)
T ss_pred eeeecCCCcchHHHH-----HHhhHHHHhcCCeEEEec-ccHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhh
Confidence 999999988775543 455555 45788999999 5999999999999999999999999999543211
Q ss_pred -CcccCCCCCCCCCCCCCCCccC-CCCccchhhHHHhhHHHHHHHHhhhcCCCccccccccCCchhhhhcccCCCCCCcc
Q 001355 387 -GSFVPFGGFFSSPPDFKNPVRS-KSHYSTLCYLCTEKLEQEVAALLKLESSDSVTDQCLDNLTSSDRIAALDTSKGVGT 464 (1093)
Q Consensus 387 -~s~~~~~g~~s~~~~~~~p~~~-~~~~~~~C~~C~~~~E~e~~~~~~~~~~~s~~~~~~~~lP~WLq~~~~~~~~~~~~ 464 (1093)
-.++++|++++....+..+... .+....||+.|+.+|+.|+.+..+. +...+|+|||+.+...
T Consensus 364 ~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~---------~~~~lP~wL~~~~~~~------ 428 (898)
T KOG1051|consen 364 ERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKS---------QAESLPPWLQNLERVD------ 428 (898)
T ss_pred hhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhh---------hhhhCCHHHHhhhhhh------
Confidence 1356788888765555544332 3466899999999999999988863 3567999999996322
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccccchhhHHHHHhhccCCCC-CCCCCcccCCCCCCCCCc
Q 001355 465 AKAKDDVTALNAKIMELQRKWNDTCQSLHRTQLVPKLDIRQRSHVQLSEFVRLMANRKGSS-SKYPSLCESQCTNPSPGA 543 (1093)
Q Consensus 465 ~~~kd~~~~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-s~~~~~~~~~~~~~~~~~ 543 (1093)
...+.++.+|+|||| +++|.+.....+... +... +...+|. + .
T Consensus 429 -------~~~~~e~~~L~kk~d---~~~h~r~~~~~~~~~-----------------~~~~~~l~~~~~----~---~-- 472 (898)
T KOG1051|consen 429 -------IKLQDEISELQKKWN---QALHKRPSLESLAPS-----------------KPTQQPLSASVD----S---E-- 472 (898)
T ss_pred -------hhhHHHHHHHHHhhh---hhhcccccccccccc-----------------ccccccchhhhc----c---c--
Confidence 225667889999999 788876532222000 0000 0000000 0 0
Q ss_pred ccccccccccccccCcccccccccccccC--ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccceeecccCC
Q 001355 544 HMLSQNISSAEQNATIPLSSEANNVNFQS--RLPINSSTKPQSNNDEHLLPPHPLADLYKPHEHTSFSFLASVTTDLGLG 621 (1093)
Q Consensus 544 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~V~tdL~Lg 621 (1093)
.+ +.. ++.++.... .....++ .| ....++.|||.||
T Consensus 473 ----------------------~s--~~~~l~~~~~~~~~-----~~~~~k~----------~r---~~d~~~~~~l~~~ 510 (898)
T KOG1051|consen 473 ----------------------RS--VIEELKLKKNSLDR-----NSLLAKA----------HR---PNDYTRETDLRYG 510 (898)
T ss_pred ----------------------hh--HHhhhccccCCccc-----chhhhcc----------cC---CCCcchhhhcccc
Confidence 00 000 000100000 0000000 11 1234678999999
Q ss_pred ccCCCccccCCCccccccccccccCCcccccccccCCccccccccCCCCCCCCCCCCCHHHHHHHHHHHhcccCccHHHH
Q 001355 622 KIYPSTRQEANTPKLIDNKEQCFSGSISAEFDAVSEGTFHNVVQSSSCSAPHTGEPFDPRDYKTLRIALAEKVGWQDEAI 701 (1093)
Q Consensus 622 ~~~~s~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~~~ss~~~~~~~~~~~d~e~lk~L~~~L~e~ViGQdeai 701 (1093)
.++...+ .+ +.++..++.+++++.++|+++|+.... +.+.++|+.|++.|.++|+||++|+
T Consensus 511 ~~p~~~~--~~----------------~~~~~~~~~~i~~~~s~~tgip~~~~~-~~e~~~l~~L~~~L~~~V~gQ~eAv 571 (898)
T KOG1051|consen 511 RIPDELS--EK----------------SNDNQGGESDISEVVSRWTGIPVDRLA-EAEAERLKKLEERLHERVIGQDEAV 571 (898)
T ss_pred ccchhhh--hh----------------cccccCCccchhhhhhhhcCCchhhhh-hhHHHHHHHHHHHHHhhccchHHHH
Confidence 9992211 10 001112567889999999999997774 6788999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCcc
Q 001355 702 CTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNID 781 (1093)
Q Consensus 702 ~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~ 781 (1093)
.+|+.+|.+|+.|..++ +++.||+|.||+|+|||+||++||+.+||+.+.||+|||+.|.+ . ..+.
T Consensus 572 ~aIa~AI~~sr~gl~~~-----~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e-v--------skli 637 (898)
T KOG1051|consen 572 AAIAAAIRRSRAGLKDP-----NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE-V--------SKLI 637 (898)
T ss_pred HHHHHHHHhhhcccCCC-----CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh-h--------hhcc
Confidence 99999999999998876 46789999999999999999999999999999999999999765 1 4778
Q ss_pred ccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCCCCCCc
Q 001355 782 FCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHS 861 (1093)
Q Consensus 782 G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~~~~~~ 861 (1093)
|.++||+|++..+.|+++++++|++||||||||| ||+.+++.|++++|+|+++|++|++|+++|+|||||||.+ +..
T Consensus 638 gsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEk-Ah~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~--~~~ 714 (898)
T KOG1051|consen 638 GSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEK-AHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVG--SSA 714 (898)
T ss_pred CCCcccccchhHHHHHHHHhcCCceEEEEechhh-cCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccc--hHh
Confidence 8999999999999999999999999999999999 9999999999999999999999999999999999999985 221
Q ss_pred cCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhc
Q 001355 862 VHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFR 941 (1093)
Q Consensus 862 ~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~ 941 (1093)
+... .. .+++++...+ ++. .+..+.+++....+
T Consensus 715 i~~~---~~-~~~~l~~~~~-------------------------------------~~~------~~~~~k~~v~~~~~ 747 (898)
T KOG1051|consen 715 IAND---AS-LEEKLLDMDE-------------------------------------KRG------SYRLKKVQVSDAVR 747 (898)
T ss_pred hhcc---cc-cccccccchh-------------------------------------hhh------hhhhhhhhhhhhhh
Confidence 1110 00 1111110000 000 00001111111110
Q ss_pred cccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecC
Q 001355 942 SYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEID 1021 (1093)
Q Consensus 942 ~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id 1021 (1093)
. .+...|.+||++|+|.+++|+|++.+++.+++...+.+..+++.+.++.+.+.
T Consensus 748 ~--------------------------~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~~~~~~~v~ 801 (898)
T KOG1051|consen 748 I--------------------------YNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEERELLLLVT 801 (898)
T ss_pred c--------------------------ccccccChHHhcccceeeeecccchhhHhhhhhhHHHHHHHHhhhhHHHHHHH
Confidence 0 01158899999999999999999999999999999999988887778889999
Q ss_pred HHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEee
Q 001355 1022 YEILVQILAATWLSD-RKKAIENWIENVVLRSFYEVRRKHHFTAGSVVKLVAH 1073 (1093)
Q Consensus 1022 ~~vle~Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~~~~~~~~~~VkLv~~ 1073 (1093)
+.+.+.++..+|..+ ++|.|.++|++.|...|...-. .......++++...
T Consensus 802 ~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l-~ei~~~~~~~i~~~ 853 (898)
T KOG1051|consen 802 DRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALL-GEVEDGLTERILVA 853 (898)
T ss_pred HHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhhe-eeecCCceEEEEec
Confidence 999999999999776 8899999999998888877666 55556778887753
No 2
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-100 Score=916.66 Aligned_cols=738 Identities=21% Similarity=0.261 Sum_probs=559.2
Q ss_pred hcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhccCCCCCCC
Q 001355 11 CLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFDRLPSSKSV 90 (1093)
Q Consensus 11 ~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~rlp~~~~~ 90 (1093)
.||+.++.+|.+|+.+|++++|.++||.|++.+||..+.|. .+...++. ....|+..+...++++|...+
T Consensus 1 ~~~~~~~~~l~~a~~~a~~~~h~~~~~eHll~~ll~~~~~~--~~l~~~~~-------~~~~l~~~~~~~~~~~~~~~~- 70 (786)
T COG0542 1 KLTERAQKALELAQELARMRRHEYVTPEHLLLALLDQPKGD--ELLNLCGI-------DLDKLRQELEEFIDKLPKVLG- 70 (786)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHcCCchH--HHHHHcCC-------CHHHHHHHHHHHHhccCCCCC-
Confidence 48999999999999999999999999999999999999998 56666653 256788899999999999876
Q ss_pred CCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCc--hhhhhhcccCCCcHHHHHhhc
Q 001355 91 EFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDP--MASRVFGEAGFLSRDIKLAII 168 (1093)
Q Consensus 91 ~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp--~vsrv~~eagf~s~~vk~~i~ 168 (1093)
. |.+|..+...+++|+.+.+...++ +|..+||+++++.++ ...++|..+|++...++..+.
T Consensus 71 ~-~~~s~~~~~~~~~a~~~a~~~~~~----------------~v~~~~llla~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 133 (786)
T COG0542 71 S-PYLSPRLKRVLERAWLLAQSLGDE----------------YVSTEHLLLALLNEPESVAAYILKKLGVTRKDVEELIE 133 (786)
T ss_pred C-CCCCHHHHHHHHHHHHHHHhccCc----------------cccHHHHHHHHhcccchHHHHHHHhccCCHHHHHHHHH
Confidence 3 888999999999998775443322 799999999999887 478999999999999988877
Q ss_pred cCCCCCCCCCCCCCC----CCCccccCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhhcccccCCCCcEEeccchhh--
Q 001355 169 QPSVTQFPPRLSLTR----CPPIFLYNLTDSFPGRAGLKLPFGPDDVDENCRRIGEVLAGRDEKKGKNPLLVGVCANS-- 242 (1093)
Q Consensus 169 ~~~~~~~~~~~~~~~----~~~~~~~n~~~~~~~~~~~~~p~~~~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~-- 242 (1093)
+....... ....+. ....|..|+++. +|.|++||+ +|||+||+|+++||+| |+|||||||||||||
T Consensus 134 ~~~~~~~~-~~~~~~~~~~~L~~y~~dlt~~--Ar~gklDPv--IGRd~EI~r~iqIL~R---R~KNNPvLiGEpGVGKT 205 (786)
T COG0542 134 ELRGGNEV-DSKNAEEDQDALEKYTRDLTEL--AREGKLDPV--IGRDEEIRRTIQILSR---RTKNNPVLVGEPGVGKT 205 (786)
T ss_pred HHhccccc-CCcccccchhhHHHHhhhhHHH--HhcCCCCCC--cChHHHHHHHHHHHhc---cCCCCCeEecCCCCCHH
Confidence 75533211 111111 123888999874 789999999 7999999999999999 999999999999998
Q ss_pred -HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCC
Q 001355 243 -ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDS 321 (1093)
Q Consensus 243 -a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~ 321 (1093)
.+||+|++|.+| +||+.|+++++++|| ||+++||++||||||+|||.|.++|++. + .|||||||+|++||+|
T Consensus 206 AIvEGLA~rIv~g---~VP~~L~~~~i~sLD--~g~LvAGakyRGeFEeRlk~vl~ev~~~-~-~vILFIDEiHtiVGAG 278 (786)
T COG0542 206 AIVEGLAQRIVNG---DVPESLKDKRIYSLD--LGSLVAGAKYRGEFEERLKAVLKEVEKS-K-NVILFIDEIHTIVGAG 278 (786)
T ss_pred HHHHHHHHHHhcC---CCCHHHcCCEEEEec--HHHHhccccccCcHHHHHHHHHHHHhcC-C-CeEEEEechhhhcCCC
Confidence 499999999996 999999999999999 9999999999999999999999999985 5 9999999999999999
Q ss_pred Ccch-HHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCCCCcceeeeccCCCCCC----------Ccc
Q 001355 322 VSTE-AARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDLQLLPIHWKSSLM----------GSF 389 (1093)
Q Consensus 322 ~~~~-~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~Lq~v~i~~~~sl~----------~s~ 389 (1093)
++.| +|| .++||+| ++||+|+|||| |||+||+||++|||+||++| |+|-|.. .|.. ..+
T Consensus 279 ~~~G~a~D-----AaNiLKPaLARGeL~~IGA-TT~~EYRk~iEKD~AL~RRF--Q~V~V~E-Ps~e~ti~ILrGlk~~y 349 (786)
T COG0542 279 ATEGGAMD-----AANLLKPALARGELRCIGA-TTLDEYRKYIEKDAALERRF--QKVLVDE-PSVEDTIAILRGLKERY 349 (786)
T ss_pred cccccccc-----hhhhhHHHHhcCCeEEEEe-ccHHHHHHHhhhchHHHhcC--ceeeCCC-CCHHHHHHHHHHHHHHH
Confidence 8755 565 4899999 89999999999 69999999999999999999 8777761 1111 111
Q ss_pred cCCCCCCCCCCC-------CCCCccCC-------CCccchhhHHHhhHHHHHHHHhhhcCCCccccccccCCchhhhhcc
Q 001355 390 VPFGGFFSSPPD-------FKNPVRSK-------SHYSTLCYLCTEKLEQEVAALLKLESSDSVTDQCLDNLTSSDRIAA 455 (1093)
Q Consensus 390 ~~~~g~~s~~~~-------~~~p~~~~-------~~~~~~C~~C~~~~E~e~~~~~~~~~~~s~~~~~~~~lP~WLq~~~ 455 (1093)
--+++..-+... +.+.+.+. +..+..|+ .+.- . .. .|.-|
T Consensus 350 E~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a-----------~~~l-~---------~~-~p~~l---- 403 (786)
T COG0542 350 EAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGA-----------RVRL-E---------ID-KPEEL---- 403 (786)
T ss_pred HHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHH-----------HHHh-c---------cc-CCcch----
Confidence 112221111000 00111100 01111111 1100 0 00 11111
Q ss_pred cCCCCCCccccccchhHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccccchhhHHHHHhhccCCCCCCCCCcccCC
Q 001355 456 LDTSKGVGTAKAKDDVTALNAKIMELQRKWNDTCQSLHRTQLVPKLDIRQRSHVQLSEFVRLMANRKGSSSKYPSLCESQ 535 (1093)
Q Consensus 456 ~~~~~~~~~~~~kd~~~~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~s~~~~~~~~~ 535 (1093)
..+++++.+|+..-..+-..- ++.++
T Consensus 404 ----------------~~~~~~~~~l~~e~~~~~~e~-------------------~~~~k------------------- 429 (786)
T COG0542 404 ----------------DELERELAQLEIEKEALEREQ-------------------DEKEK------------------- 429 (786)
T ss_pred ----------------hHHHHHHHHHHHHHHHHhhhh-------------------hHHHH-------------------
Confidence 122333333332111110000 00000
Q ss_pred CCCCCCCcccccccccccccccCcccccccccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccee
Q 001355 536 CTNPSPGAHMLSQNISSAEQNATIPLSSEANNVNFQSRLPINSSTKPQSNNDEHLLPPHPLADLYKPHEHTSFSFLASVT 615 (1093)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~V~ 615 (1093)
. .. .....
T Consensus 430 ------------------~------------~~---~~~~~--------------------------------------- 437 (786)
T COG0542 430 ------------------K------------LI---DEIIK--------------------------------------- 437 (786)
T ss_pred ------------------H------------HH---HHHHH---------------------------------------
Confidence 0 00 00000
Q ss_pred ecccCCccCCCccccCCCccccccccccccCCcccccccccCCccccccccCCCCCCCCCCCCCHHHHHHHHHHHhcccC
Q 001355 616 TDLGLGKIYPSTRQEANTPKLIDNKEQCFSGSISAEFDAVSEGTFHNVVQSSSCSAPHTGEPFDPRDYKTLRIALAEKVG 695 (1093)
Q Consensus 616 tdL~Lg~~~~s~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~~~ss~~~~~~~~~~~d~e~lk~L~~~L~e~Vi 695 (1093)
+.-+.++..+. .+ +. .|+.+.|++++++|+++|+.+|. +.+.+.+..|.+.|.++|+
T Consensus 438 --~~~~~~~~~~~--------------~~----~~--~v~~~~Ia~vv~~~TgIPv~~l~-~~e~~kll~le~~L~~rVi 494 (786)
T COG0542 438 --LKEGRIPELEK--------------EL----EA--EVDEDDIAEVVARWTGIPVAKLL-EDEKEKLLNLERRLKKRVI 494 (786)
T ss_pred --HhhhhhhhHHH--------------HH----hh--ccCHHHHHHHHHHHHCCChhhhc-hhhHHHHHHHHHHHhccee
Confidence 00000000000 00 00 15567889999999999999886 7899999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccc
Q 001355 696 WQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIF 775 (1093)
Q Consensus 696 GQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~ 775 (1093)
||++|+.+|+.+|.+.|+|+..+++|. .+|||.||+|||||++|++||+.+||+...++++||++|.+ .|++
T Consensus 495 GQd~AV~avs~aIrraRaGL~dp~rPi----gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E---kHsV- 566 (786)
T COG0542 495 GQDEAVEAVSDAIRRARAGLGDPNRPI----GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME---KHSV- 566 (786)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCc----eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH---HHHH-
Confidence 999999999999999999999998877 48999999999999999999999999999999999999754 5555
Q ss_pred cCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 776 DCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 776 ~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
..++|+++||+|+...+.|+++++++||+||+|||||| |||++++.|+|.|++|+++|+.|++|+|+|+|||||||+
T Consensus 567 --SrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEK-AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 567 --SRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEK-AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred --HHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhh-cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 48899999999999999999999999999999999999 999999999999999999999999999999999999998
Q ss_pred CCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCccchhh
Q 001355 856 LKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQ 935 (1093)
Q Consensus 856 ~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~ 935 (1093)
| +..+.. .. .+. ....+..+
T Consensus 644 G--s~~i~~--------------~~-------~~~----------------------------------~~~~~~~~--- 663 (786)
T COG0542 644 G--SEEILR--------------DA-------DGD----------------------------------DFADKEAL--- 663 (786)
T ss_pred c--hHHHHh--------------hc-------ccc----------------------------------ccchhhhH---
Confidence 5 222110 00 000 00000001
Q ss_pred hhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHHHHHHHHHHHHhcCCC
Q 001355 936 VDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKILREIQPKFQRAFGFE 1015 (1093)
Q Consensus 936 ~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~ 1015 (1093)
......+..+.|.|||+||||++|+|+||+.+.+.+|+..++.++..++...+
T Consensus 664 ---------------------------~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~ 716 (786)
T COG0542 664 ---------------------------KEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERG 716 (786)
T ss_pred ---------------------------HHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11123566789999999999999999999999999999999999999999889
Q ss_pred ceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEe
Q 001355 1016 VLLEIDYEILVQILAATWLSD-RKKAIENWIENVVLRSFYEVRRKHHFTAGSVVKLVA 1072 (1093)
Q Consensus 1016 ~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~~~~~~~~~~VkLv~ 1072 (1093)
+.|+++++++++|+..+|.+. |.|.+++.|++-+.+.|.+....+....+..|++..
T Consensus 717 i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~g~~~~~~~v~v~~ 774 (786)
T COG0542 717 ITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDGGTVKVDV 774 (786)
T ss_pred ceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHhcccCCCcEEEEEe
Confidence 999999999999999999655 555555555555555555554554444467776664
No 3
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=5.8e-74 Score=719.85 Aligned_cols=751 Identities=17% Similarity=0.204 Sum_probs=543.8
Q ss_pred hhcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhccCCCCCC
Q 001355 10 QCLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFDRLPSSKS 89 (1093)
Q Consensus 10 q~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~rlp~~~~ 89 (1093)
..||+++..+|..|+.+|++++|+++||.|++.+||..+.|+...++...+.+ ...|...+...+.+.|....
T Consensus 3 ~rfT~~a~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~~~a~~iL~~~gid-------~~~l~~~l~~~l~~~~~~~~ 75 (821)
T CHL00095 3 ERFTEKAIKVIMLSQEEARRLGHNFVGTEQILLGLIGEGTGIAARALKSMGVT-------LKDARIEVEKIIGRGTGFVA 75 (821)
T ss_pred hhHhHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCCchHHHHHHHcCCC-------HHHHHHHHHHHHhcCCCCCc
Confidence 36899999999999999999999999999999999999999999999998853 34466666666766553221
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCch--hhhhhcccCCCcHHHHHhh
Q 001355 90 VEFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDPM--ASRVFGEAGFLSRDIKLAI 167 (1093)
Q Consensus 90 ~~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp~--vsrv~~eagf~s~~vk~~i 167 (1093)
..|++|..+..+|..|+...++...+ +|..+||+++||+++. .+++|...|.+...++..+
T Consensus 76 -~~~~~S~~~~~vL~~A~~~A~~~~~~----------------~I~~eHLLlALL~~~ds~a~~iL~~~gvd~~~L~~~l 138 (821)
T CHL00095 76 -VEIPFTPRAKRVLEMSLEEARDLGHN----------------YIGTEHLLLALLEEGEGVAARVLENLGVDLSKIRSLI 138 (821)
T ss_pred -cccccCHHHHHHHHHHHHHHHHhCCC----------------cccHHHHHHHHHhCCCchHHHHHHHcCCCHHHHHHHH
Confidence 46889999999999997554332211 6999999999998763 6789999999988888777
Q ss_pred ccCCCCCCCCCCCC-C---CCC---CccccCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhhcccccCCCCcEEeccch
Q 001355 168 IQPSVTQFPPRLSL-T---RCP---PIFLYNLTDSFPGRAGLKLPFGPDDVDENCRRIGEVLAGRDEKKGKNPLLVGVCA 240 (1093)
Q Consensus 168 ~~~~~~~~~~~~~~-~---~~~---~~~~~n~~~~~~~~~~~~~p~~~~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~ 240 (1093)
.+....... ...+ . ... ..|+.|+++. ++.|..+|+ +|||+||++++++|.| ++|+||||||+||
T Consensus 139 ~~~l~~~~e-~~~~~~~~~~~~~~l~~~~~~l~~~--a~~~~~~~~--igr~~ei~~~~~~L~r---~~~~n~lL~G~pG 210 (821)
T CHL00095 139 LNLIGEIIE-AILGAEQSRSKTPTLEEFGTNLTKE--AIDGNLDPV--IGREKEIERVIQILGR---RTKNNPILIGEPG 210 (821)
T ss_pred HHHhccccc-cccccccccccchHHHHHHHHHHHH--HHcCCCCCC--CCcHHHHHHHHHHHcc---cccCCeEEECCCC
Confidence 653211100 0000 0 011 2688888874 677889998 6999999999999999 9999999999999
Q ss_pred hh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhh
Q 001355 241 NS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVL 317 (1093)
Q Consensus 241 ~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~ 317 (1093)
+| .+++++.+|.++ +||+.|++.+|++++ ++.+++|..||||||+||+.+...++. .+++||||||+|.+
T Consensus 211 vGKTal~~~la~~i~~~---~vp~~l~~~~i~~l~--~~~l~ag~~~~ge~e~rl~~i~~~~~~--~~~~ILfiDEih~l 283 (821)
T CHL00095 211 VGKTAIAEGLAQRIVNR---DVPDILEDKLVITLD--IGLLLAGTKYRGEFEERLKRIFDEIQE--NNNIILVIDEVHTL 283 (821)
T ss_pred CCHHHHHHHHHHHHHhC---CCChhhcCCeEEEee--HHHHhccCCCccHHHHHHHHHHHHHHh--cCCeEEEEecHHHH
Confidence 98 499999999885 899999999999999 999999999999999999999998874 46899999999999
Q ss_pred hcCCCcchHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCCCCcceeeeccCCCC-----CC----C
Q 001355 318 VSDSVSTEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDLQLLPIHWKSS-----LM----G 387 (1093)
Q Consensus 318 v~~~~~~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~Lq~v~i~~~~s-----l~----~ 387 (1093)
++++...+.+ .++++|+| +++|++.|||+ ||+++|++|++++|+|++++ +.+.++.-+. ++ .
T Consensus 284 ~~~g~~~g~~-----~~a~lLkp~l~rg~l~~Iga-Tt~~ey~~~ie~D~aL~rRf--~~I~v~ep~~~e~~aILr~l~~ 355 (821)
T CHL00095 284 IGAGAAEGAI-----DAANILKPALARGELQCIGA-TTLDEYRKHIEKDPALERRF--QPVYVGEPSVEETIEILFGLRS 355 (821)
T ss_pred hcCCCCCCcc-----cHHHHhHHHHhCCCcEEEEe-CCHHHHHHHHhcCHHHHhcc--eEEecCCCCHHHHHHHHHHHHH
Confidence 9988755554 45778877 78999999999 69999999999999999998 5566662110 00 1
Q ss_pred cccCCCCCCCCCCC--------CCCCcc-------CCCCccchhhHHHh----------hHHHHHHHHhhhcCCCccccc
Q 001355 388 SFVPFGGFFSSPPD--------FKNPVR-------SKSHYSTLCYLCTE----------KLEQEVAALLKLESSDSVTDQ 442 (1093)
Q Consensus 388 s~~~~~g~~s~~~~--------~~~p~~-------~~~~~~~~C~~C~~----------~~E~e~~~~~~~~~~~s~~~~ 442 (1093)
.+--+.+.. -+.+ +...+. .....+.+|..+.. .+++++.++....
T Consensus 356 ~~e~~~~v~-i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 426 (821)
T CHL00095 356 RYEKHHNLS-ISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDK-------- 426 (821)
T ss_pred HHHHHcCCC-CCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHH--------
Confidence 111111111 0111 001111 00111223322211 1111111111000
Q ss_pred cccCCchhhhhcccCCCCCCccccccchhHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccccchhhHHHHHhhccC
Q 001355 443 CLDNLTSSDRIAALDTSKGVGTAKAKDDVTALNAKIMELQRKWNDTCQSLHRTQLVPKLDIRQRSHVQLSEFVRLMANRK 522 (1093)
Q Consensus 443 ~~~~lP~WLq~~~~~~~~~~~~~~~kd~~~~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 522 (1093)
.++-.. ++ . .+...|+.++.++-..+.. + ..
T Consensus 427 ------~~~~~~--------------~~---~-~~~~~~~~~~~~~~~~~~~-----------~----~~---------- 457 (821)
T CHL00095 427 ------DEAIRE--------------QD---F-ETAKQLRDREMEVRAQIAA-----------I----IQ---------- 457 (821)
T ss_pred ------HHHHhC--------------cc---h-HHHHHHHHHHHHHHHHHHH-----------H----HH----------
Confidence 000000 00 0 0011111111111000000 0 00
Q ss_pred CCCCCCCCcccCCCCCCCCCcccccccccccccccCcccccccccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001355 523 GSSSKYPSLCESQCTNPSPGAHMLSQNISSAEQNATIPLSSEANNVNFQSRLPINSSTKPQSNNDEHLLPPHPLADLYKP 602 (1093)
Q Consensus 523 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (1093)
.|. ....
T Consensus 458 ---------------------------------------------------~~~---------------~~~~------- 464 (821)
T CHL00095 458 ---------------------------------------------------SKK---------------TEEE------- 464 (821)
T ss_pred ---------------------------------------------------HHH---------------hhhc-------
Confidence 000 0000
Q ss_pred CCCCCcccccceeecccCCccCCCccccCCCccccccccccccCCcccccccccCCccccccccCCCCCCCCCCCCCHHH
Q 001355 603 HEHTSFSFLASVTTDLGLGKIYPSTRQEANTPKLIDNKEQCFSGSISAEFDAVSEGTFHNVVQSSSCSAPHTGEPFDPRD 682 (1093)
Q Consensus 603 ~~~~sp~~~~~V~tdL~Lg~~~~s~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~~~ss~~~~~~~~~~~d~e~ 682 (1093)
. + . . ...|+...++.++++||++|+..+. +-+.+.
T Consensus 465 --~--~---------~---------------~----------------~~~v~~~~i~~~~~~~tgip~~~~~-~~~~~~ 499 (821)
T CHL00095 465 --K--R---------L---------------E----------------VPVVTEEDIAEIVSAWTGIPVNKLT-KSESEK 499 (821)
T ss_pred --c--c---------c---------------c----------------CCccCHHHHHHHHHHHHCCCchhhc-hhHHHH
Confidence 0 0 0 0 0014445678889999999998885 567888
Q ss_pred HHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 683 YKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 683 lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
+..|++.|.++|+||++|+..|+.+|.+++.|+..+++|. .++||+||+|||||++|++||+.+||+..+++++||
T Consensus 500 l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~----~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~ 575 (821)
T CHL00095 500 LLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPI----ASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDM 575 (821)
T ss_pred HHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCc----eEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEc
Confidence 9999999999999999999999999999999998776554 478999999999999999999999999999999999
Q ss_pred CCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 763 SSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 763 s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
+.|.+. +++ ..++|.++||+|+...+.+.++++.+|++||||||||| ||+++++.|+++|++|+++|..|+.|
T Consensus 576 s~~~~~---~~~---~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeiek-a~~~v~~~Llq~le~g~~~d~~g~~v 648 (821)
T CHL00095 576 SEYMEK---HTV---SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEK-AHPDIFNLLLQILDDGRLTDSKGRTI 648 (821)
T ss_pred hhcccc---ccH---HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhh-CCHHHHHHHHHHhccCceecCCCcEE
Confidence 986532 222 35678888899988888999999999999999999999 99999999999999999999999999
Q ss_pred ecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccC
Q 001355 843 SISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKR 922 (1093)
Q Consensus 843 ~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~ 922 (1093)
+++|+|||+|||.| +..+.. .. -.++|..... ..+
T Consensus 649 ~~~~~i~I~Tsn~g--~~~i~~--------------~~-----~~~gf~~~~~--------------~~~---------- 683 (821)
T CHL00095 649 DFKNTLIIMTSNLG--SKVIET--------------NS-----GGLGFELSEN--------------QLS---------- 683 (821)
T ss_pred ecCceEEEEeCCcc--hHHHHh--------------hc-----cccCCccccc--------------ccc----------
Confidence 99999999999985 221110 00 0122211000 000
Q ss_pred CCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHHHH
Q 001355 923 TDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKILR 1002 (1093)
Q Consensus 923 ~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii~~ 1002 (1093)
...+..+.+.+ ..+....|.|||++|||.+|+|+||+.+++.+|+..
T Consensus 684 ---~~~~~~~~~~~------------------------------~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 684 ---EKQYKRLSNLV------------------------------NEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred ---cccHHHHHHHH------------------------------HHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHH
Confidence 00000011111 134456799999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEe
Q 001355 1003 EIQPKFQRAFGFEVLLEIDYEILVQILAATWLSD-RKKAIENWIENVVLRSFYEVRRKHHFTAGSVVKLVA 1072 (1093)
Q Consensus 1003 ~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~~~~~~~~~~VkLv~ 1072 (1093)
.+.+..+++...++.|.++++++++|+..+|.+. |+|.|+++|++.+.+.|.+.........+..|++..
T Consensus 731 ~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l~~~~~~g~~v~~~~ 801 (821)
T CHL00095 731 MLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLSFKIKPGDIIIVDV 801 (821)
T ss_pred HHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHhCccCCCCEEEEEE
Confidence 9999888887789999999999999999999755 888888888888888888777777666667776663
No 4
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=7.9e-74 Score=715.91 Aligned_cols=781 Identities=18% Similarity=0.209 Sum_probs=554.7
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhccCCCCCCCC
Q 001355 12 LSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFDRLPSSKSVE 91 (1093)
Q Consensus 12 lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~rlp~~~~~~ 91 (1093)
||+.+..+|..|+.+|+++||+++||.|++.+||..+.|.+..++..++.+ ...|+..+...|+++|.+.+ .
T Consensus 1 Lt~~a~~~L~~A~~~A~~~~h~~I~~eHLLlaLL~~~~~~~~~iL~~~Gvd-------~~~Lr~~le~~l~~~p~~~~-~ 72 (852)
T TIGR03345 1 LNPTSRRALEQAAALCVARGHPEVELEHWLLALLDQPDSDLAAILRHFGVD-------LGRLKADLARALDKLPRGNT-R 72 (852)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhccCcHHHHHHHHcCCC-------HHHHHHHHHHHhccCCCCCC-C
Confidence 799999999999999999999999999999999999999999999988843 45688888899999997443 4
Q ss_pred CCCCcHHHHHHHHHHHHhh-hcCCCCcchhhhhccccccceeeehhHHHHHHHhcCch----hhhhhccc-CCCcHHHHH
Q 001355 92 FPPISNSLMAAIKRSQAQQ-RRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDPM----ASRVFGEA-GFLSRDIKL 165 (1093)
Q Consensus 92 ~p~~Sn~l~aa~kraqa~q-rr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp~----vsrv~~ea-gf~s~~vk~ 165 (1093)
.|++|..+..+|++|+.+. ....++ +|+.+||+++|++++. .++++.+. |+....++.
T Consensus 73 ~~~~S~~l~~vL~~A~~~~a~~~g~~----------------~I~teHLLlALl~e~~~~~~~~~~~~~~~~~~~~~~~~ 136 (852)
T TIGR03345 73 TPVFSPHLVELLQEAWLLASLELGDG----------------RIRSGHLLLALLTDPELRRLLGSISPELAKIDREALRE 136 (852)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHcCCC----------------cccHHHHHHHHHccccchhHHHHHHHHHhCCCHHHHHH
Confidence 6899999999999998632 222111 7999999999998763 45678887 888888876
Q ss_pred hhccC-CCCC--C---CCCCC--CCC------CCCccccCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhhcccccCCC
Q 001355 166 AIIQP-SVTQ--F---PPRLS--LTR------CPPIFLYNLTDSFPGRAGLKLPFGPDDVDENCRRIGEVLAGRDEKKGK 231 (1093)
Q Consensus 166 ~i~~~-~~~~--~---~~~~~--~~~------~~~~~~~n~~~~~~~~~~~~~p~~~~~rdeeirrv~~vL~R~~~~~k~ 231 (1093)
.+.+. .... . ...-. ... .-..|+.||++. +|.+.++|+ +||+++|++++++|.| ++|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~--~r~~~ld~~--iGr~~ei~~~i~~l~r---~~~~ 209 (852)
T TIGR03345 137 ALPALVEGSAEASAAAADAGPAAAAAGAAGTSALDQYTTDLTAQ--AREGKIDPV--LGRDDEIRQMIDILLR---RRQN 209 (852)
T ss_pred HHHHHhcCCccccccccccccccccccccchhhHHHHhhhHHHH--hcCCCCCcc--cCCHHHHHHHHHHHhc---CCcC
Confidence 66432 1110 0 00000 000 012688899874 688899999 6999999999999999 9999
Q ss_pred CcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcEE
Q 001355 232 NPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVV 308 (1093)
Q Consensus 232 NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvi 308 (1093)
||||||+||+| .+++++++|..+ +||+.|++.++++++ ++.++||..+|||||+||+++..+++.. ++++|
T Consensus 210 n~lLvG~pGvGKTal~~~La~~i~~~---~v~~~l~~~~i~~l~--l~~l~ag~~~~ge~e~~lk~ii~e~~~~-~~~~I 283 (852)
T TIGR03345 210 NPILTGEAGVGKTAVVEGLALRIAAG---DVPPALRNVRLLSLD--LGLLQAGASVKGEFENRLKSVIDEVKAS-PQPII 283 (852)
T ss_pred ceeEECCCCCCHHHHHHHHHHHHhhC---CCCccccCCeEEEee--hhhhhcccccchHHHHHHHHHHHHHHhc-CCCeE
Confidence 99999999998 499999999885 899999999999999 9999999999999999999999998764 67999
Q ss_pred EEeCcchhhhcCCCcchHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCCCCcceeeeccCCC--C-
Q 001355 309 VNYGELKVLVSDSVSTEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDLQLLPIHWKS--S- 384 (1093)
Q Consensus 309 l~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~Lq~v~i~~~~--s- 384 (1093)
|||||+|.++++++..+..|+ +++|+| +++|++.|||| ||+++|.+|++++|+|+++| |.|.|+.-+ .
T Consensus 284 LfIDEih~l~~~g~~~~~~d~-----~n~Lkp~l~~G~l~~Iga-TT~~e~~~~~~~d~AL~rRf--~~i~v~eps~~~~ 355 (852)
T TIGR03345 284 LFIDEAHTLIGAGGQAGQGDA-----ANLLKPALARGELRTIAA-TTWAEYKKYFEKDPALTRRF--QVVKVEEPDEETA 355 (852)
T ss_pred EEEeChHHhccCCCccccccH-----HHHhhHHhhCCCeEEEEe-cCHHHHhhhhhccHHHHHhC--eEEEeCCCCHHHH
Confidence 999999999998865555543 567777 77999999999 69999999999999999999 566666211 0
Q ss_pred --C----CCcccCCCCCCCCCCC-------CCC-------CccCCCCccchhhHHH----------hhHHHHHHHHhhhc
Q 001355 385 --L----MGSFVPFGGFFSSPPD-------FKN-------PVRSKSHYSTLCYLCT----------EKLEQEVAALLKLE 434 (1093)
Q Consensus 385 --l----~~s~~~~~g~~s~~~~-------~~~-------p~~~~~~~~~~C~~C~----------~~~E~e~~~~~~~~ 434 (1093)
+ ...+-.++++.-++.. +.. |-+..+..+..|..+. +.+++++.++....
T Consensus 356 ~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~ 435 (852)
T TIGR03345 356 IRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELEL 435 (852)
T ss_pred HHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 0 0000001121111000 111 1111111234444333 23333433333211
Q ss_pred CCCccccccccCCchhhhhcccCCCCCCcc-ccccchhHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccccchhhH
Q 001355 435 SSDSVTDQCLDNLTSSDRIAALDTSKGVGT-AKAKDDVTALNAKIMELQRKWNDTCQSLHRTQLVPKLDIRQRSHVQLSE 513 (1093)
Q Consensus 435 ~~~s~~~~~~~~lP~WLq~~~~~~~~~~~~-~~~kd~~~~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~~~~~~~~~~~~ 513 (1093)
.++.......+...+. .+.+.+...++.++..|..+|...+.-..... . .+
T Consensus 436 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~------~~ 487 (852)
T TIGR03345 436 --------------DALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAIL--------A------LR 487 (852)
T ss_pred --------------HHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H------HH
Confidence 1111110000000000 00011233556677788899987653211000 0 00
Q ss_pred HHHHhhccCCCCCCCCCcccCCCCCCCCCcccccccccccccccCcccccccccccccCccCCCCCCCCCCCCCCCCCCC
Q 001355 514 FVRLMANRKGSSSKYPSLCESQCTNPSPGAHMLSQNISSAEQNATIPLSSEANNVNFQSRLPINSSTKPQSNNDEHLLPP 593 (1093)
Q Consensus 514 ~~r~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1093)
..+. +... +. ...
T Consensus 488 ~~~~--~~~~-------~~-------~~~--------------------------------------------------- 500 (852)
T TIGR03345 488 AELE--ADAD-------AP-------ADD--------------------------------------------------- 500 (852)
T ss_pred HHhh--hccc-------ch-------hhh---------------------------------------------------
Confidence 0000 0000 00 000
Q ss_pred CCCCCCCCCCCCCCcccccceeecccCCccCCCccccCCCccccccccccccCCcccccccccCCccccccccCCCCCCC
Q 001355 594 HPLADLYKPHEHTSFSFLASVTTDLGLGKIYPSTRQEANTPKLIDNKEQCFSGSISAEFDAVSEGTFHNVVQSSSCSAPH 673 (1093)
Q Consensus 594 ~~~~~~~~~~~~~sp~~~~~V~tdL~Lg~~~~s~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~~~ss~~~~~~ 673 (1093)
.++.++.++..+.... ..+.. ..+ ....|+...++.++++||++|+.+
T Consensus 501 ----------------------~~~~~~~~~~~~~~~~---~~~~~--~~~-----~~~~v~~~~i~~vv~~~tgip~~~ 548 (852)
T TIGR03345 501 ----------------------DAALRAQLAELEAALA---SAQGE--EPL-----VFPEVDAQAVAEVVADWTGIPVGR 548 (852)
T ss_pred ----------------------hHHHHHHHHHHHHHHH---HHhhc--ccc-----ccceecHHHHHHHHHHHHCCCchh
Confidence 0000000000000000 00000 000 001255677899999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC
Q 001355 674 TGEPFDPRDYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN 753 (1093)
Q Consensus 674 ~~~~~d~e~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs 753 (1093)
+. .-+.+++..|.+.|.++|+||++|+..|+.+|..+++|+.++++|. .|+||+||+|||||++|++||+.+|++
T Consensus 549 ~~-~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~----~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 549 MV-RDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPL----GVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred hc-hhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCc----eEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 85 5677899999999999999999999999999999999998886655 489999999999999999999999999
Q ss_pred CCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 754 KGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 754 ~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
...|+++||+.|... +++ ..++|.++||+|+...+.|+++++++|++||+|||||| +|+.+++.|+++|++|+
T Consensus 624 ~~~~~~~dmse~~~~---~~~---~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEiek-a~~~v~~~Llq~ld~g~ 696 (852)
T TIGR03345 624 EQNLITINMSEFQEA---HTV---SRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEK-AHPDVLELFYQVFDKGV 696 (852)
T ss_pred CcceEEEeHHHhhhh---hhh---ccccCCCCCcccccccchHHHHHHhCCCcEEEEechhh-cCHHHHHHHHHHhhcce
Confidence 999999999987542 222 46788888999888788999999999999999999999 99999999999999999
Q ss_pred EecCCCeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCC
Q 001355 834 FTDSYGRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSN 913 (1093)
Q Consensus 834 ~~d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~ 913 (1093)
++|+.|+.|+++|+|||+|||.|. .. +.. ...+.
T Consensus 697 l~d~~Gr~vd~~n~iiI~TSNlg~--~~--------------~~~-------~~~~~----------------------- 730 (852)
T TIGR03345 697 MEDGEGREIDFKNTVILLTSNAGS--DL--------------IMA-------LCADP----------------------- 730 (852)
T ss_pred eecCCCcEEeccccEEEEeCCCch--HH--------------HHH-------hccCc-----------------------
Confidence 999999999999999999999852 11 000 00000
Q ss_pred chhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCCh
Q 001355 914 PESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNF 993 (1093)
Q Consensus 914 ~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~ 993 (1093)
++. .....+.+.+ ..+....|.|+|++|+| +|+|+||+.
T Consensus 731 -----~~~-----~~~~~~~~~~------------------------------~~~~~~~f~PEflnRi~-iI~F~pLs~ 769 (852)
T TIGR03345 731 -----ETA-----PDPEALLEAL------------------------------RPELLKVFKPAFLGRMT-VIPYLPLDD 769 (852)
T ss_pred -----ccC-----cchHHHHHHH------------------------------HHHHHHhccHHHhccee-EEEeCCCCH
Confidence 000 0000011111 13445689999999997 999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 001355 994 DLLAEKILREIQPKFQRAFGF-EVLLEIDYEILVQILAATWLSD-RKKAIENWIENVVLRSFYEVRRKHHFT 1063 (1093)
Q Consensus 994 ~~l~~ii~~~i~~~~~~~~~~-~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~~~~~~ 1063 (1093)
+++.+|+...+....+++... ++.++|+++++++|+..+|.+. +.|.++++|+..+.+.|.+........
T Consensus 770 e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l~~~~~ 841 (852)
T TIGR03345 770 DVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILERLAA 841 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHhChhc
Confidence 999999999999987777554 8899999999999999998654 788888888888878777766665443
No 5
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=5.6e-71 Score=692.20 Aligned_cols=801 Identities=20% Similarity=0.242 Sum_probs=563.7
Q ss_pred hcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhccCCCCCCC
Q 001355 11 CLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFDRLPSSKSV 90 (1093)
Q Consensus 11 ~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~rlp~~~~~ 90 (1093)
.||+++..+|..|+.+|++++|.++||.|++.+||..+.|.++.++...+.+ ...|...+...+.++|+..++
T Consensus 5 ~~~~~~~~~l~~a~~~a~~~~~~~~~~~hll~~l~~~~~~~~~~~l~~~~~~-------~~~l~~~~~~~~~~~~~~~~~ 77 (857)
T PRK10865 5 RLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLLTSAGIN-------AGQLRTDINQALSRLPQVEGT 77 (857)
T ss_pred HhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCC-------HHHHHHHHHHHHhhCCCCCCC
Confidence 6999999999999999999999999999999999999999999999998853 566888888899999964322
Q ss_pred -CCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCch-hhhhhcccCCCcHHHHHhhc
Q 001355 91 -EFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDPM-ASRVFGEAGFLSRDIKLAII 168 (1093)
Q Consensus 91 -~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp~-vsrv~~eagf~s~~vk~~i~ 168 (1093)
..|++|..+..+|.+|+.+.+...+. +|..+||++++|+++. +.++|.+.|++...++..+.
T Consensus 78 ~~~~~~~~~~~~~l~~a~~~~~~~~~~----------------~i~~~~ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 141 (857)
T PRK10865 78 GGDVQPSQDLVRVLNLCDKLAQKRGDN----------------FISSELFVLAALESRGTLADILKAAGATTANITQAIE 141 (857)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHcCCC----------------cccHHHHHHHHHcCcchHHHHHHHcCCCHHHHHHHHH
Confidence 56889999999999997664443211 7999999999998864 67789999999899987775
Q ss_pred cCCCCCC-CCCCCCCC--CCCccccCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhhcccccCCCCcEEeccchhh---
Q 001355 169 QPSVTQF-PPRLSLTR--CPPIFLYNLTDSFPGRAGLKLPFGPDDVDENCRRIGEVLAGRDEKKGKNPLLVGVCANS--- 242 (1093)
Q Consensus 169 ~~~~~~~-~~~~~~~~--~~~~~~~n~~~~~~~~~~~~~p~~~~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~--- 242 (1093)
+...+.. ...-+... .-..|+.||++. +|.|.++|+ +||++||||+++||.| ++|+||||||+||+|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~r~~~l~~v--igr~~ei~~~i~iL~r---~~~~n~lL~G~pGvGKT~ 214 (857)
T PRK10865 142 QMRGGESVNDQGAEDQRQALKKYTIDLTER--AEQGKLDPV--IGRDEEIRRTIQVLQR---RTKNNPVLIGEPGVGKTA 214 (857)
T ss_pred HhhccccccccccccchhHHHHHhhhHHHH--HhcCCCCcC--CCCHHHHHHHHHHHhc---CCcCceEEECCCCCCHHH
Confidence 4321110 00000000 112688888874 688899999 6999999999999999 999999999999998
Q ss_pred HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCC
Q 001355 243 ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSV 322 (1093)
Q Consensus 243 a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~ 322 (1093)
.+++++.++..+ +||+.|++.+++.++ ++++++|..+||+||+||+.+...+... ++++||||||+|.++++++
T Consensus 215 l~~~la~~i~~~---~vp~~l~~~~~~~l~--l~~l~ag~~~~g~~e~~lk~~~~~~~~~-~~~~ILfIDEih~l~~~~~ 288 (857)
T PRK10865 215 IVEGLAQRIING---EVPEGLKGRRVLALD--MGALVAGAKYRGEFEERLKGVLNDLAKQ-EGNVILFIDELHTMVGAGK 288 (857)
T ss_pred HHHHHHHHhhcC---CCchhhCCCEEEEEe--hhhhhhccchhhhhHHHHHHHHHHHHHc-CCCeEEEEecHHHhccCCC
Confidence 499999999985 999999999999999 9999999999999999999999887654 7799999999999999987
Q ss_pred cchHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCCCCcceeeeccCCC-------CCCCcccCCCC
Q 001355 323 STEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDLQLLPIHWKS-------SLMGSFVPFGG 394 (1093)
Q Consensus 323 ~~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~Lq~v~i~~~~-------sl~~s~~~~~g 394 (1093)
+.+++++ +++|+| +++|++.|||| ||+++|++|++++|+|+++|+.-.|+.|... .+....--+++
T Consensus 289 ~~~~~d~-----~~~lkp~l~~g~l~~Iga-Tt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~ 362 (857)
T PRK10865 289 ADGAMDA-----GNMLKPALARGELHCVGA-TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHH 362 (857)
T ss_pred CccchhH-----HHHhcchhhcCCCeEEEc-CCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCC
Confidence 7677654 677887 78999999999 6999999999999999999953333333100 00000000111
Q ss_pred CCCCCC--------------CCCCCccCC----------CCccchhhHHHhhHHHHHHHHhhhcCCCccccccccCCchh
Q 001355 395 FFSSPP--------------DFKNPVRSK----------SHYSTLCYLCTEKLEQEVAALLKLESSDSVTDQCLDNLTSS 450 (1093)
Q Consensus 395 ~~s~~~--------------~~~~p~~~~----------~~~~~~C~~C~~~~E~e~~~~~~~~~~~s~~~~~~~~lP~W 450 (1093)
+.-++. +-.-|-+.. .......++-.+.+|++...+...- .+
T Consensus 363 v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~--------------e~ 428 (857)
T PRK10865 363 VQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQ--------------QA 428 (857)
T ss_pred CCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHH--------------HH
Confidence 100000 000010000 0001122333344555544443221 11
Q ss_pred hhhcccCCC-CCCccccccchhHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccccchhhHHHHHhhccCCCCCCCC
Q 001355 451 DRIAALDTS-KGVGTAKAKDDVTALNAKIMELQRKWNDTCQSLHRTQLVPKLDIRQRSHVQLSEFVRLMANRKGSSSKYP 529 (1093)
Q Consensus 451 Lq~~~~~~~-~~~~~~~~kd~~~~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~s~~~ 529 (1093)
+.......+ .+. .+++++...+.+++..|+.+|......+-... ... ...++...
T Consensus 429 l~~e~~~~~~~~~--~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~--------~~~-~ele~l~~------------- 484 (857)
T PRK10865 429 LMKESDEASKKRL--DMLNEELSDKERQYSELEEEWKAEKASLSGTQ--------TIK-AELEQAKI------------- 484 (857)
T ss_pred HHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--------HHH-HHHHHHHH-------------
Confidence 111100000 000 01123334566677779999998765442110 000 00000000
Q ss_pred CcccCCCCCCCCCcccccccccccccccCcccccccccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 001355 530 SLCESQCTNPSPGAHMLSQNISSAEQNATIPLSSEANNVNFQSRLPINSSTKPQSNNDEHLLPPHPLADLYKPHEHTSFS 609 (1093)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 609 (1093)
+...... ... ..
T Consensus 485 -------------------kie~a~~---------~~~------~~---------------------------------- 496 (857)
T PRK10865 485 -------------------AIEQARR---------VGD------LA---------------------------------- 496 (857)
T ss_pred -------------------HHHHHHh---------hhh------hh----------------------------------
Confidence 0000000 000 00
Q ss_pred cccceeecccCCccCCCccccCCCccccccccccccCCcccccccccCCccccccccCCCCCCCCCCCCCHHHHHHHHHH
Q 001355 610 FLASVTTDLGLGKIYPSTRQEANTPKLIDNKEQCFSGSISAEFDAVSEGTFHNVVQSSSCSAPHTGEPFDPRDYKTLRIA 689 (1093)
Q Consensus 610 ~~~~V~tdL~Lg~~~~s~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~~~ss~~~~~~~~~~~d~e~lk~L~~~ 689 (1093)
-.++|.++.++........ .+..+.....+. ...|+..+++.++++||++|+.++. +-+.+++..|.+.
T Consensus 497 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~v~~~~i~~vv~~~tgip~~~~~-~~~~~~l~~l~~~ 565 (857)
T PRK10865 497 ----RMSELQYGKIPELEKQLAA-ATQLEGKTMRLL-----RNKVTDAEIAEVLARWTGIPVSRML-ESEREKLLRMEQE 565 (857)
T ss_pred ----hHHHhhhhhhHHHHHHHHH-HHhhhccccccc-----cCccCHHHHHHHHHHHHCCCchhhh-hhHHHHHHHHHHH
Confidence 0011111111110000000 000000000000 0125667889999999999999886 5578899999999
Q ss_pred HhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccC
Q 001355 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVS 769 (1093)
Q Consensus 690 L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~ 769 (1093)
|.++|+||+.++..|..+|.++++|+.++++|. .+++|+||+|||||++|++||+.+|++..+|+++||+.+...
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~----~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~- 640 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPI----GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK- 640 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCC----ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhh-
Confidence 999999999999999999999999988775554 489999999999999999999999998889999999986431
Q ss_pred CCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEE
Q 001355 770 QPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIF 849 (1093)
Q Consensus 770 ~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~ 849 (1093)
+.+ ..++|.++||+|+...+.+.++++.+|++||||||||+ +++.+|+.|+++|++|++++..|+.++++|+||
T Consensus 641 --~~~---~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEiek-a~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~ii 714 (857)
T PRK10865 641 --HSV---SRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEK-AHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVV 714 (857)
T ss_pred --hhH---HHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhh-CCHHHHHHHHHHHhhCceecCCceEEeecccEE
Confidence 111 35678888888887778899999999999999999999 999999999999999999999999999999999
Q ss_pred EEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCC
Q 001355 850 VATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSP 929 (1093)
Q Consensus 850 IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~ 929 (1093)
|+|||.+ +..+ .. .++.. .+
T Consensus 715 I~TSN~g--~~~~--------------~~--------~~~~~------------------------------------~~ 734 (857)
T PRK10865 715 IMTSNLG--SDLI--------------QE--------RFGEL------------------------------------DY 734 (857)
T ss_pred EEeCCcc--hHHH--------------HH--------hcccc------------------------------------ch
Confidence 9999984 1110 00 00000 00
Q ss_pred ccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHHHHHHHHHHH
Q 001355 930 INSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKILREIQPKFQ 1009 (1093)
Q Consensus 930 ~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii~~~i~~~~~ 1009 (1093)
..+...+ .....+.|.|+|++|+|.+|+|+|++.+++.+++...+....+
T Consensus 735 ~~~~~~~------------------------------~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~ 784 (857)
T PRK10865 735 AHMKELV------------------------------LGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYK 784 (857)
T ss_pred HHHHHHH------------------------------HHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHH
Confidence 0000000 0223457999999999999999999999999999999999887
Q ss_pred HhcCCCceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 001355 1010 RAFGFEVLLEIDYEILVQILAATWLSD-RKKAIENWIENVVLRSFYEVRRKHHFTAGSVVKLV 1071 (1093)
Q Consensus 1010 ~~~~~~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~~~~~~~~~~VkLv 1071 (1093)
++...++.+.|+++++++|+..+|... |.|.|+++|++.+.+.|.+.........+..|++.
T Consensus 785 rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~iL~g~~~~~~~~~~~ 847 (857)
T PRK10865 785 RLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLE 847 (857)
T ss_pred HHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEE
Confidence 776667889999999999999999765 77777777777777777666665554445566555
No 6
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=2.6e-69 Score=679.58 Aligned_cols=797 Identities=19% Similarity=0.253 Sum_probs=549.7
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhccCCCCCCC-
Q 001355 12 LSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFDRLPSSKSV- 90 (1093)
Q Consensus 12 lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~rlp~~~~~- 90 (1093)
||+.+..+|..|+.+|+++||.++||.|++.+||..+.|++..++.+.+.+ ...|...+...+++.|+..+.
T Consensus 1 fT~~a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~~g~a~~iL~~~Gvd-------~~~l~~~l~~~l~~~~~~~~~~ 73 (852)
T TIGR03346 1 FTEKFQEALQAAQSLALGRDHQQIEPEHLLKALLDQEGGLARRLLQKAGVN-------VGALRQALEKELEKLPKVSGPG 73 (852)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHHHHcCCC-------HHHHHHHHHHHhcccccCCCCC
Confidence 699999999999999999999999999999999999999999999988843 456777788889998864432
Q ss_pred CCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCch-hhhhhcccCCCcHHHHHhhcc
Q 001355 91 EFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDPM-ASRVFGEAGFLSRDIKLAIIQ 169 (1093)
Q Consensus 91 ~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp~-vsrv~~eagf~s~~vk~~i~~ 169 (1093)
..|++|..+..+|.+|+.+.+...++ +|..+||+++||+++. .+++|++.|++...+...+.+
T Consensus 74 ~~~~~S~~~~~vLe~A~~~A~~~g~~----------------~I~teHLLlALl~e~~~a~~iL~~~gi~~~~l~~~l~~ 137 (852)
T TIGR03346 74 GQVYLSPELNRLLNLAEKLAQKRGDE----------------FISSEHLLLALLDDKGTLGKLLKEAGATADALEAAINA 137 (852)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHcCCC----------------cccHHHHHHHHHcCCccHHHHHHHcCCCHHHHHHHHHh
Confidence 46889999999999997654443221 7999999999998864 568999999999988887754
Q ss_pred CCCCCCC-CCCCC--CCCCCccccCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhhcccccCCCCcEEeccchhh---H
Q 001355 170 PSVTQFP-PRLSL--TRCPPIFLYNLTDSFPGRAGLKLPFGPDDVDENCRRIGEVLAGRDEKKGKNPLLVGVCANS---A 243 (1093)
Q Consensus 170 ~~~~~~~-~~~~~--~~~~~~~~~n~~~~~~~~~~~~~p~~~~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~---a 243 (1093)
...+... ..-.. ...-..|..|+++. ++.|..+|+ +|||++|++++++|.| ++|+||||||+||+| .
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~~--igr~~ei~~~~~~l~r---~~~~n~lL~G~pGvGKT~l 210 (852)
T TIGR03346 138 VRGGQKVTSANAEDQYEALEKYARDLTER--AREGKLDPV--IGRDEEIRRTIQVLSR---RTKNNPVLIGEPGVGKTAI 210 (852)
T ss_pred hccCccccccccccchhHHHHHhhhHHHH--hhCCCCCcC--CCcHHHHHHHHHHHhc---CCCCceEEEcCCCCCHHHH
Confidence 3211100 00000 00112777888874 678889999 6999999999999999 999999999999998 4
Q ss_pred HHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCc
Q 001355 244 LKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVS 323 (1093)
Q Consensus 244 ~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~ 323 (1093)
+++++.+|..+ +||+.|++.+++.++ ++.+++|..+|++||.|++.+.+.+... ++++||||||+|.++++|..
T Consensus 211 ~~~la~~i~~~---~~p~~l~~~~~~~l~--~~~l~a~~~~~g~~e~~l~~~l~~~~~~-~~~~ILfIDEih~l~~~g~~ 284 (852)
T TIGR03346 211 VEGLAQRIVNG---DVPESLKNKRLLALD--MGALIAGAKYRGEFEERLKAVLNEVTKS-EGQIILFIDELHTLVGAGKA 284 (852)
T ss_pred HHHHHHHHhcc---CCchhhcCCeEEEee--HHHHhhcchhhhhHHHHHHHHHHHHHhc-CCCeEEEeccHHHhhcCCCC
Confidence 99999999885 999999999999999 9999999999999999999999988754 67999999999999998876
Q ss_pred chHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCCCCcceeeeccCCCCCC----------CcccCC
Q 001355 324 TEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDLQLLPIHWKSSLM----------GSFVPF 392 (1093)
Q Consensus 324 ~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~Lq~v~i~~~~sl~----------~s~~~~ 392 (1093)
.+.++ .+++|+| +++|++.|||+ ||+++|++|++++|+|+++| |.|.|+.- +.- ..+..+
T Consensus 285 ~~~~d-----~~~~Lk~~l~~g~i~~Iga-Tt~~e~r~~~~~d~al~rRf--~~i~v~~p-~~~~~~~iL~~~~~~~e~~ 355 (852)
T TIGR03346 285 EGAMD-----AGNMLKPALARGELHCIGA-TTLDEYRKYIEKDAALERRF--QPVFVDEP-TVEDTISILRGLKERYEVH 355 (852)
T ss_pred cchhH-----HHHHhchhhhcCceEEEEe-CcHHHHHHHhhcCHHHHhcC--CEEEeCCC-CHHHHHHHHHHHHHHhccc
Confidence 66654 4567777 77899999999 69999999999999999999 44555410 110 001111
Q ss_pred CCCCCCCCC-------CCC-------CccCCCCccchhhHHH----------hhHHHHHHHHhhhcCCCccccccccCCc
Q 001355 393 GGFFSSPPD-------FKN-------PVRSKSHYSTLCYLCT----------EKLEQEVAALLKLESSDSVTDQCLDNLT 448 (1093)
Q Consensus 393 ~g~~s~~~~-------~~~-------p~~~~~~~~~~C~~C~----------~~~E~e~~~~~~~~~~~s~~~~~~~~lP 448 (1093)
.++.-+... +.. |-+..+-.+..|+.+. ...++++..+....
T Consensus 356 ~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 421 (852)
T TIGR03346 356 HGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIER-------------- 421 (852)
T ss_pred cCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHH--------------
Confidence 111100000 111 2111111133444332 22333333222111
Q ss_pred hhhhhcccCCC-CCCccccccchhHHHHHHHHHHHHHHHHHhhhcccCCCCC-cccccccccchhhHHHHHhhccCCCC-
Q 001355 449 SSDRIAALDTS-KGVGTAKAKDDVTALNAKIMELQRKWNDTCQSLHRTQLVP-KLDIRQRSHVQLSEFVRLMANRKGSS- 525 (1093)
Q Consensus 449 ~WLq~~~~~~~-~~~~~~~~kd~~~~~~~~~~~L~kkW~~~c~~lh~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~- 525 (1093)
.++....+... .+. ....++...++.++..+...|+..-..+.....+. .+..... .+.+-+| ...-.
T Consensus 422 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~ 492 (852)
T TIGR03346 422 EALKKEKDEASKERL--EDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRL---ELEQAER----EGDLAK 492 (852)
T ss_pred HHHHhcchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh----hhhHHH
Confidence 01111000000 000 00012333556667778888876543211100000 0000000 0000000 00000
Q ss_pred CCCCCcccCCCCCCCCCcccccccccccccccCcccccccccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001355 526 SKYPSLCESQCTNPSPGAHMLSQNISSAEQNATIPLSSEANNVNFQSRLPINSSTKPQSNNDEHLLPPHPLADLYKPHEH 605 (1093)
Q Consensus 526 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (1093)
.+...|. . .|. .+..+....... .+ . .
T Consensus 493 ~~~~~~~------------~-------------~~~--------~~~~~~~~~~~~--~~-------~-----------~ 519 (852)
T TIGR03346 493 AAELQYG------------K-------------LPE--------LEKRLQAAEAKL--GE-------E-----------T 519 (852)
T ss_pred HHHhhhc------------c-------------hHH--------HHHHHHHHHHHh--hh-------c-----------c
Confidence 0000000 0 000 000000000000 00 0 0
Q ss_pred CCcccccceeecccCCccCCCccccCCCccccccccccccCCcccccccccCCccccccccCCCCCCCCCCCCCHHHHHH
Q 001355 606 TSFSFLASVTTDLGLGKIYPSTRQEANTPKLIDNKEQCFSGSISAEFDAVSEGTFHNVVQSSSCSAPHTGEPFDPRDYKT 685 (1093)
Q Consensus 606 ~sp~~~~~V~tdL~Lg~~~~s~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~~~ss~~~~~~~~~~~d~e~lk~ 685 (1093)
+. .+. ...|+..+++.++++|+++|+..+. .-+.+.+..
T Consensus 520 ---------~~--------------------------~l~-----~~~v~~~~i~~v~~~~tgip~~~~~-~~e~~~l~~ 558 (852)
T TIGR03346 520 ---------KP--------------------------RLL-----REEVTAEEIAEVVSRWTGIPVSKML-EGEREKLLH 558 (852)
T ss_pred ---------cc--------------------------ccc-----cCCcCHHHHHHHHHHhcCCCccccc-HHHHHHHHH
Confidence 00 000 0124556788899999999998875 467889999
Q ss_pred HHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc
Q 001355 686 LRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE 765 (1093)
Q Consensus 686 L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~ 765 (1093)
|.+.|.++|+||++++..|+.+|.+++.|+..+++|. .++||+||+|||||++|++||+.+|++..+|+++||+.|
T Consensus 559 l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~----~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~ 634 (852)
T TIGR03346 559 MEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPI----GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEY 634 (852)
T ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCC----eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 9999999999999999999999999999988775544 589999999999999999999999999999999999986
Q ss_pred cccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecC
Q 001355 766 QRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSIS 845 (1093)
Q Consensus 766 ~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~ 845 (1093)
... +.+ ..++|.++||+|+...+.++++++.+|++||||||||+ +++.+|+.|+++|++|++++..|+.++++
T Consensus 635 ~~~---~~~---~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeiek-a~~~v~~~Ll~~l~~g~l~d~~g~~vd~r 707 (852)
T TIGR03346 635 MEK---HSV---ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEK-AHPDVFNVLLQVLDDGRLTDGQGRTVDFR 707 (852)
T ss_pred ccc---chH---HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEecccc-CCHHHHHHHHHHHhcCceecCCCeEEecC
Confidence 432 221 35678888888887778999999999999999999999 99999999999999999999999999999
Q ss_pred CcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCC
Q 001355 846 GMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDD 925 (1093)
Q Consensus 846 naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~ 925 (1093)
|+|||+|||.|. ..+.. ..+ +
T Consensus 708 n~iiI~TSn~g~--~~~~~--------------~~~-------~------------------------------------ 728 (852)
T TIGR03346 708 NTVIIMTSNLGS--QFIQE--------------LAG-------G------------------------------------ 728 (852)
T ss_pred CcEEEEeCCcch--HhHhh--------------hcc-------c------------------------------------
Confidence 999999999852 11100 000 0
Q ss_pred CCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHHHHHHH
Q 001355 926 GDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKILREIQ 1005 (1093)
Q Consensus 926 ~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii~~~i~ 1005 (1093)
.++..+...+ .......|.|||++|||.+|+|+|++.+++.+|+...+.
T Consensus 729 -~~~~~~~~~~------------------------------~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 729 -DDYEEMREAV------------------------------MEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred -ccHHHHHHHH------------------------------HHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHH
Confidence 0000000001 123456899999999999999999999999999999998
Q ss_pred HHHHHhcCCCceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 001355 1006 PKFQRAFGFEVLLEIDYEILVQILAATWLSD-RKKAIENWIENVVLRSFYEVRRKHHFTAGSVVKLV 1071 (1093)
Q Consensus 1006 ~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~~~~~~~~~~VkLv 1071 (1093)
...+++...++.+.|+++++++|+..+|... +.|.++++|++.+.+.|.+....++...+..|++.
T Consensus 778 ~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~~~~~~~~~~~~~ 844 (852)
T TIGR03346 778 RLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGEVADGDTIVVD 844 (852)
T ss_pred HHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 8777776678889999999999999999533 55555555555555555444444444334555554
No 7
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=7.2e-66 Score=640.18 Aligned_cols=706 Identities=20% Similarity=0.260 Sum_probs=519.2
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhc-cCCCCCCC
Q 001355 12 LSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFD-RLPSSKSV 90 (1093)
Q Consensus 12 lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~-rlp~~~~~ 90 (1093)
||++|..+|..|+.+|++++|.++||.|++.+||..+. ...++.+.+.+ ...|...+...+. ++|...+.
T Consensus 1 ~~~~a~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~--~~~iL~~~gid-------~~~l~~~l~~~l~~~~p~~~~~ 71 (731)
T TIGR02639 1 ISEELERILDAALEEAKKRRHEFVTLEHILLALLFDSD--AIEILEECGGD-------VEALRKDLEDYLENNLPSITEE 71 (731)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCch--HHHHHHHcCCC-------HHHHHHHHHHHHhhcCCCCCCC
Confidence 68999999999999999999999999999999999886 44778887743 4557777777777 67764331
Q ss_pred --CCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCc-h-hhhhhcccCCCcHHHHHh
Q 001355 91 --EFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDP-M-ASRVFGEAGFLSRDIKLA 166 (1093)
Q Consensus 91 --~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp-~-vsrv~~eagf~s~~vk~~ 166 (1093)
..|++|..+..+|.+|+...++..++ +|..+||+++++.++ + .+++|.+.|.+...+...
T Consensus 72 ~~~~~~~S~~lk~vL~~A~~~A~~~g~~----------------~I~teHLLLALl~~~~~~a~~lL~~~gi~~~~l~~~ 135 (731)
T TIGR02639 72 NEADPEQTVGVQRVLQRALLHVKSAGKK----------------EIGIGDILVALFDEEDSHASYFLKSQGITRLDILEY 135 (731)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHcCCC----------------ccCHHHHHHHHhcCcccHHHHHHHHcCCCHHHHHHH
Confidence 35889999999999997654443322 799999999999875 3 457999999998888777
Q ss_pred hcc-CCC-CCC-CCCCCC--CC------CCCccccCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhhcccccCCCCcEE
Q 001355 167 IIQ-PSV-TQF-PPRLSL--TR------CPPIFLYNLTDSFPGRAGLKLPFGPDDVDENCRRIGEVLAGRDEKKGKNPLL 235 (1093)
Q Consensus 167 i~~-~~~-~~~-~~~~~~--~~------~~~~~~~n~~~~~~~~~~~~~p~~~~~rdeeirrv~~vL~R~~~~~k~Npvl 235 (1093)
+.. ... ... ...... .. .-..|..|+++. +|.|.++|+ +||+++|++++++|.| ++|+||||
T Consensus 136 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~r~~~l~~~--igr~~ei~~~~~~L~~---~~~~n~lL 208 (731)
T TIGR02639 136 ISHGIPKDDGKNRDAEEAGKEEAKKQEDALEKYTVDLTEK--AKNGKIDPL--IGREDELERTIQVLCR---RKKNNPLL 208 (731)
T ss_pred HHhhcccccccccccccccccccccchhHHHHHhhhHHHH--HhcCCCCcc--cCcHHHHHHHHHHHhc---CCCCceEE
Confidence 642 110 000 000000 00 012577788764 577889999 6999999999999999 99999999
Q ss_pred eccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeC
Q 001355 236 VGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYG 312 (1093)
Q Consensus 236 VGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~ig 312 (1093)
+|+||+| .+++++.++..+ .||..|++.++++++ ++.+++|..++|+||+|++++.++++. .+++|||||
T Consensus 209 ~G~pG~GKT~l~~~la~~~~~~---~~p~~l~~~~~~~~~--~~~l~a~~~~~g~~e~~l~~i~~~~~~--~~~~ILfiD 281 (731)
T TIGR02639 209 VGEPGVGKTAIAEGLALRIAEG---KVPENLKNAKIYSLD--MGSLLAGTKYRGDFEERLKAVVSEIEK--EPNAILFID 281 (731)
T ss_pred ECCCCCCHHHHHHHHHHHHHhC---CCchhhcCCeEEEec--HHHHhhhccccchHHHHHHHHHHHHhc--cCCeEEEEe
Confidence 9999998 499999999985 899999999999999 999999999999999999999998875 358999999
Q ss_pred cchhhhcCCCc-chHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCCCCcceeeeccCCCCCCCccc
Q 001355 313 ELKVLVSDSVS-TEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDLQLLPIHWKSSLMGSFV 390 (1093)
Q Consensus 313 dl~~~v~~~~~-~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~Lq~v~i~~~~sl~~s~~ 390 (1093)
|+|.+++++.. ++.++ +.++|+| +++|++.|||| ||+++|.+|++++|+|.++| |.+.|+.
T Consensus 282 Eih~l~~~g~~~~~~~~-----~~~~L~~~l~~g~i~~Iga-Tt~~e~~~~~~~d~al~rRf--~~i~v~~--------- 344 (731)
T TIGR02639 282 EIHTIVGAGATSGGSMD-----ASNLLKPALSSGKLRCIGS-TTYEEYKNHFEKDRALSRRF--QKIDVGE--------- 344 (731)
T ss_pred cHHHHhccCCCCCccHH-----HHHHHHHHHhCCCeEEEEe-cCHHHHHHHhhhhHHHHHhC--ceEEeCC---------
Confidence 99999998753 33444 3566766 67899999999 69999999999999999999 5676661
Q ss_pred CCCCCCCCCCCCCCCccCCCCccchhhHHHhhHHHHHHHHhhhcCCCccccccccCCchhhhhcccCCCCCCccccccch
Q 001355 391 PFGGFFSSPPDFKNPVRSKSHYSTLCYLCTEKLEQEVAALLKLESSDSVTDQCLDNLTSSDRIAALDTSKGVGTAKAKDD 470 (1093)
Q Consensus 391 ~~~g~~s~~~~~~~p~~~~~~~~~~C~~C~~~~E~e~~~~~~~~~~~s~~~~~~~~lP~WLq~~~~~~~~~~~~~~~kd~ 470 (1093)
| + ..+..+++..- .+..-+.+. ... .|+
T Consensus 345 p----------------------~---------~~~~~~il~~~------------~~~~e~~~~------v~i---~~~ 372 (731)
T TIGR02639 345 P----------------------S---------IEETVKILKGL------------KEKYEEFHH------VKY---SDE 372 (731)
T ss_pred C----------------------C---------HHHHHHHHHHH------------HHHHHhccC------ccc---CHH
Confidence 0 0 00111122100 000000000 000 111
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccccchhhHHHHHhhccCCCCCCCCCcccCCCCCCCCCcccccccc
Q 001355 471 VTALNAKIMELQRKWNDTCQSLHRTQLVPKLDIRQRSHVQLSEFVRLMANRKGSSSKYPSLCESQCTNPSPGAHMLSQNI 550 (1093)
Q Consensus 471 ~~~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 550 (1093)
.+. .+. +++.+-+..+.+|.- ...+ +++ .
T Consensus 373 --al~-~~~-------~ls~ryi~~r~~P~k-ai~l----ld~------------------------------------a 401 (731)
T TIGR02639 373 --ALE-AAV-------ELSARYINDRFLPDK-AIDV----IDE------------------------------------A 401 (731)
T ss_pred --HHH-HHH-------HhhhcccccccCCHH-HHHH----HHH------------------------------------h
Confidence 010 011 112222222111110 0000 000 0
Q ss_pred cccccccCcccccccccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccceeecccCCccCCCcccc
Q 001355 551 SSAEQNATIPLSSEANNVNFQSRLPINSSTKPQSNNDEHLLPPHPLADLYKPHEHTSFSFLASVTTDLGLGKIYPSTRQE 630 (1093)
Q Consensus 551 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~V~tdL~Lg~~~~s~~~~ 630 (1093)
.++.. .. + ... +
T Consensus 402 ~a~~~------------------~~-----------------~---------~~~----~-------------------- 413 (731)
T TIGR02639 402 GASFR------------------LR-----------------P---------KAK----K-------------------- 413 (731)
T ss_pred hhhhh------------------cC-----------------c---------ccc----c--------------------
Confidence 00000 00 0 000 0
Q ss_pred CCCccccccccccccCCcccccccccCCccccccccCCCCCCCCCCCCCHHHHHHHHHHHhcccCccHHHHHHHHHHHHH
Q 001355 631 ANTPKLIDNKEQCFSGSISAEFDAVSEGTFHNVVQSSSCSAPHTGEPFDPRDYKTLRIALAEKVGWQDEAICTISQAVSR 710 (1093)
Q Consensus 631 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~~~ss~~~~~~~~~~~d~e~lk~L~~~L~e~ViGQdeai~~Ia~aI~~ 710 (1093)
...|+...+...+++|+++|...+. .-+.+.+..|.+.|.++|+||++++..|+.++..
T Consensus 414 --------------------~~~v~~~~i~~~i~~~tgiP~~~~~-~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~ 472 (731)
T TIGR02639 414 --------------------KANVSVKDIENVVAKMAHIPVKTVS-VDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKR 472 (731)
T ss_pred --------------------ccccCHHHHHHHHHHHhCCChhhhh-hHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHH
Confidence 0013334566677888999887664 4467799999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccc
Q 001355 711 WRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGK 790 (1093)
Q Consensus 711 ~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~ 790 (1093)
.+.|+..+++|. .+++|+||+|||||++|++||+.+ ..+|+++||+.|.+. +++ ..++|.++||+|+
T Consensus 473 ~~~g~~~~~~p~----~~~lf~Gp~GvGKT~lA~~la~~l---~~~~~~~d~se~~~~---~~~---~~lig~~~gyvg~ 539 (731)
T TIGR02639 473 SRAGLGNPNKPV----GSFLFTGPTGVGKTELAKQLAEAL---GVHLERFDMSEYMEK---HTV---SRLIGAPPGYVGF 539 (731)
T ss_pred HhcCCCCCCCCc----eeEEEECCCCccHHHHHHHHHHHh---cCCeEEEeCchhhhc---ccH---HHHhcCCCCCccc
Confidence 999988775554 479999999999999999999998 457999999987542 221 3577888888888
Q ss_pred hhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCCCCCCccCCCCCCCc
Q 001355 791 VLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHSVHPQTTPVK 870 (1093)
Q Consensus 791 ~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~ 870 (1093)
...+.+.++++.+|++||||||||| +++++++.|+++|++|+++|..|+.++++|+|||+|||.| +..+..
T Consensus 540 ~~~~~l~~~~~~~p~~VvllDEiek-a~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g--~~~~~~------ 610 (731)
T TIGR02639 540 EQGGLLTEAVRKHPHCVLLLDEIEK-AHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAG--ASEMSK------ 610 (731)
T ss_pred chhhHHHHHHHhCCCeEEEEechhh-cCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcc--hhhhhh------
Confidence 8888999999999999999999999 9999999999999999999999999999999999999985 221110
Q ss_pred chHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcc
Q 001355 871 FSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPA 950 (1093)
Q Consensus 871 f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~ 950 (1093)
..++|... ....
T Consensus 611 ---------------~~~~f~~~-------------------------------------~~~~---------------- 622 (731)
T TIGR02639 611 ---------------PPIGFGSE-------------------------------------NVES---------------- 622 (731)
T ss_pred ---------------ccCCcchh-------------------------------------hhHH----------------
Confidence 01111000 0000
Q ss_pred cccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHh
Q 001355 951 DEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILA 1030 (1093)
Q Consensus 951 ~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~ 1030 (1093)
....+....|.|+|++|||.+|+|+||+.+++.+|+...+.+..+++...++.|.++++++++|+.
T Consensus 623 --------------~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~ 688 (731)
T TIGR02639 623 --------------KSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAE 688 (731)
T ss_pred --------------HHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHH
Confidence 011344568999999999999999999999999999999998888887778999999999999999
Q ss_pred cCCchh-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEE
Q 001355 1031 ATWLSD-RKKAIENWIENVVLRSFYEVRRKHHFTAGSVVK 1069 (1093)
Q Consensus 1031 ~~~~~~-~~r~ie~wve~vl~~~l~e~~~~~~~~~~~~Vk 1069 (1093)
.+|.+. |.|.|+++|++.+.+.|.+....+....+..++
T Consensus 689 ~~~~~~~GaR~l~r~i~~~~~~~l~~~~l~~~~~~~~~~~ 728 (731)
T TIGR02639 689 KGYDEEFGARPLARVIQEEIKKPLSDEILFGKLKKGGSVK 728 (731)
T ss_pred hCCCcccCchHHHHHHHHHhHHHHHHHHHhCcCCCCCEEE
Confidence 999766 889999999998888887777766544444443
No 8
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-65 Score=626.55 Aligned_cols=709 Identities=19% Similarity=0.204 Sum_probs=516.0
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhc-cCCCCCC-
Q 001355 12 LSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFD-RLPSSKS- 89 (1093)
Q Consensus 12 lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~-rlp~~~~- 89 (1093)
||+++..+|..|+.+|++++|.++||.|++.+||..+. +..++..++.+ ...++..+...+. ..|...+
T Consensus 2 ~~~~~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 72 (758)
T PRK11034 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVD-------LVALRQELEAFIEQTTPVLPAS 72 (758)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChh--HHHHHHHcCCC-------HHHHHHHHHHHHhhcCCcCCCC
Confidence 79999999999999999999999999999999998765 78888888743 5667778887777 4443221
Q ss_pred --CCCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCc-h-hhhhhcccCCCcHHHHH
Q 001355 90 --VEFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDP-M-ASRVFGEAGFLSRDIKL 165 (1093)
Q Consensus 90 --~~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp-~-vsrv~~eagf~s~~vk~ 165 (1093)
+.+++.|.++...|.+|+.+.+...++ +|..+||+++|++++ + .+++|.+.|.....+..
T Consensus 73 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~----------------~i~~~~ll~a~~~~~~~~~~~~l~~~~~~~~~~~~ 136 (758)
T PRK11034 73 EEERDTQPTLSFQRVLQRAVFHVQSSGRS----------------EVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVN 136 (758)
T ss_pred CCcCCcCCCHHHHHHHHHHHHHHHHcCCC----------------cccHHHHHHHHhcCCcchHHHHHHHcCCCHHHHHH
Confidence 124667888888999887654433211 799999999999876 3 45689999987666655
Q ss_pred hhccCCCC--CC-CC---CCCCCC-------CCCccccCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhhcccccCCCC
Q 001355 166 AIIQPSVT--QF-PP---RLSLTR-------CPPIFLYNLTDSFPGRAGLKLPFGPDDVDENCRRIGEVLAGRDEKKGKN 232 (1093)
Q Consensus 166 ~i~~~~~~--~~-~~---~~~~~~-------~~~~~~~n~~~~~~~~~~~~~p~~~~~rdeeirrv~~vL~R~~~~~k~N 232 (1093)
.+.+.... .. .. .-+... .-..|+.||++. ++.|..+|+ +||+++|++++++|.| ++++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--a~~g~~~~l--iGR~~ei~~~i~iL~r---~~~~n 209 (758)
T PRK11034 137 FISHGTRKDEPSQSSDPGSQPNSEEQAGGEERMENFTTNLNQL--ARVGGIDPL--IGREKELERAIQVLCR---RRKNN 209 (758)
T ss_pred HHHhCCccccccccccccccccccccccchhHHHHHHHhHHHH--HHcCCCCcC--cCCCHHHHHHHHHHhc---cCCCC
Confidence 44321000 00 00 000000 112788899874 688999998 6999999999999999 99999
Q ss_pred cEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEE
Q 001355 233 PLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVV 309 (1093)
Q Consensus 233 pvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil 309 (1093)
|+|+|++|+| .+++++.+|.++ ++|..|.+.++++++ ++.+++|..++|+||.|++.+...++. .+++||
T Consensus 210 ~LLvGppGvGKT~lae~la~~i~~~---~vP~~l~~~~~~~l~--~~~llaG~~~~Ge~e~rl~~l~~~l~~--~~~~IL 282 (758)
T PRK11034 210 PLLVGESGVGKTAIAEGLAWRIVQG---DVPEVMADCTIYSLD--IGSLLAGTKYRGDFEKRFKALLKQLEQ--DTNSIL 282 (758)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhc---CCCchhcCCeEEecc--HHHHhcccchhhhHHHHHHHHHHHHHh--cCCCEE
Confidence 9999999998 499999999885 799999999999999 999999999999999999999998875 346799
Q ss_pred EeCcchhhhcCCCc-chHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCCCCcceeeeccCCCCCCC
Q 001355 310 NYGELKVLVSDSVS-TEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDLQLLPIHWKSSLMG 387 (1093)
Q Consensus 310 ~igdl~~~v~~~~~-~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~Lq~v~i~~~~sl~~ 387 (1093)
||||+|.+++++.. .+.+ +++++|+| +++|++.|||| ||+++|.+++++||+|+++| |.+.|+.
T Consensus 283 fIDEIh~L~g~g~~~~g~~-----d~~nlLkp~L~~g~i~vIgA-Tt~~E~~~~~~~D~AL~rRF--q~I~v~e------ 348 (758)
T PRK11034 283 FIDEIHTIIGAGAASGGQV-----DAANLIKPLLSSGKIRVIGS-TTYQEFSNIFEKDRALARRF--QKIDITE------ 348 (758)
T ss_pred EeccHHHHhccCCCCCcHH-----HHHHHHHHHHhCCCeEEEec-CChHHHHHHhhccHHHHhhC--cEEEeCC------
Confidence 99999999998863 3344 34666766 66899999998 69999999999999999999 6677761
Q ss_pred cccCCCCCCCCCCCCCCCccCCCCccchhhHHHhhHHHHHHHHhhhcCCCccccccccCCchhhhhcccCCCCCCccccc
Q 001355 388 SFVPFGGFFSSPPDFKNPVRSKSHYSTLCYLCTEKLEQEVAALLKLESSDSVTDQCLDNLTSSDRIAALDTSKGVGTAKA 467 (1093)
Q Consensus 388 s~~~~~g~~s~~~~~~~p~~~~~~~~~~C~~C~~~~E~e~~~~~~~~~~~s~~~~~~~~lP~WLq~~~~~~~~~~~~~~~ 467 (1093)
| + ..+...|+..- .+.+-..+ +...
T Consensus 349 ---P------------------s-------------~~~~~~IL~~~------------~~~ye~~h------~v~i--- 373 (758)
T PRK11034 349 ---P------------------S-------------IEETVQIINGL------------KPKYEAHH------DVRY--- 373 (758)
T ss_pred ---C------------------C-------------HHHHHHHHHHH------------HHHhhhcc------CCCc---
Confidence 1 0 00111121100 00000000 0000
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccccchhhHHHHHhhccCCCCCCCCCcccCCCCCCCCCccccc
Q 001355 468 KDDVTALNAKIMELQRKWNDTCQSLHRTQLVPKLDIRQRSHVQLSEFVRLMANRKGSSSKYPSLCESQCTNPSPGAHMLS 547 (1093)
Q Consensus 468 kd~~~~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 547 (1093)
.|+ .+. ...+|.+ ++ +..+. +|.- ... .++|
T Consensus 374 ~~~--al~-~a~~ls~---ry---i~~r~-lPdK-aid----llde---------------------------------- 404 (758)
T PRK11034 374 TAK--AVR-AAVELAV---KY---INDRH-LPDK-AID----VIDE---------------------------------- 404 (758)
T ss_pred CHH--HHH-HHHHHhh---cc---ccCcc-ChHH-HHH----HHHH----------------------------------
Confidence 010 000 0111100 00 00000 0000 000 0000
Q ss_pred ccccccccccCcccccccccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccceeecccCCccCCCc
Q 001355 548 QNISSAEQNATIPLSSEANNVNFQSRLPINSSTKPQSNNDEHLLPPHPLADLYKPHEHTSFSFLASVTTDLGLGKIYPST 627 (1093)
Q Consensus 548 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~V~tdL~Lg~~~~s~ 627 (1093)
-.++. . . .| ...
T Consensus 405 --a~a~~---------------------~----------------~-------------~~----------------~~~ 416 (758)
T PRK11034 405 --AGARA---------------------R----------------L-------------MP----------------VSK 416 (758)
T ss_pred --HHHhh---------------------c----------------c-------------Cc----------------ccc
Confidence 00000 0 0 00 000
Q ss_pred cccCCCccccccccccccCCcccccccccCCccccccccCCCCCCCCCCCCCHHHHHHHHHHHhcccCccHHHHHHHHHH
Q 001355 628 RQEANTPKLIDNKEQCFSGSISAEFDAVSEGTFHNVVQSSSCSAPHTGEPFDPRDYKTLRIALAEKVGWQDEAICTISQA 707 (1093)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~~~ss~~~~~~~~~~~d~e~lk~L~~~L~e~ViGQdeai~~Ia~a 707 (1093)
. + ..|+...+..++++|+++|+..+. .-+.+.+..|.+.|.++|+||++++..|+.+
T Consensus 417 ~---~-------------------~~v~~~~i~~v~~~~tgip~~~~~-~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~ 473 (758)
T PRK11034 417 R---K-------------------KTVNVADIESVVARIARIPEKSVS-QSDRDTLKNLGDRLKMLVFGQDKAIEALTEA 473 (758)
T ss_pred c---c-------------------cccChhhHHHHHHHHhCCChhhhh-hhHHHHHHHHHHHhcceEeCcHHHHHHHHHH
Confidence 0 0 012334567788999999998875 5577899999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCcccccccc
Q 001355 708 VSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKL 787 (1093)
Q Consensus 708 I~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~ 787 (1093)
|..++.|+..+++|. .++||+||+|||||++|++||+.+ ..+|+.+||+.|.+. +++ ..++|.++||
T Consensus 474 i~~~~~gl~~~~kp~----~~~Lf~GP~GvGKT~lAk~LA~~l---~~~~i~id~se~~~~---~~~---~~LiG~~~gy 540 (758)
T PRK11034 474 IKMSRAGLGHEHKPV----GSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMER---HTV---SRLIGAPPGY 540 (758)
T ss_pred HHHHhccccCCCCCc----ceEEEECCCCCCHHHHHHHHHHHh---CCCcEEeechhhccc---ccH---HHHcCCCCCc
Confidence 999999988775554 479999999999999999999998 468999999986532 222 4678888899
Q ss_pred ccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCCCCCCccCCCCC
Q 001355 788 RGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHSVHPQTT 867 (1093)
Q Consensus 788 ~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~ 867 (1093)
+|+...+.++++++.+|++||||||||| +++++|+.|+++|++|.+++..|+.++++|+|||+|||.| ...
T Consensus 541 vg~~~~g~L~~~v~~~p~sVlllDEiek-a~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g--~~~------ 611 (758)
T PRK11034 541 VGFDQGGLLTDAVIKHPHAVLLLDEIEK-AHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG--VRE------ 611 (758)
T ss_pred ccccccchHHHHHHhCCCcEEEeccHhh-hhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcC--HHH------
Confidence 9887778899999999999999999999 9999999999999999999999999999999999999974 111
Q ss_pred CCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCC
Q 001355 868 PVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLN 947 (1093)
Q Consensus 868 ~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLN 947 (1093)
+. +..+|+...+
T Consensus 612 --------~~-------~~~~g~~~~~----------------------------------------------------- 623 (758)
T PRK11034 612 --------TE-------RKSIGLIHQD----------------------------------------------------- 623 (758)
T ss_pred --------Hh-------hcccCcccch-----------------------------------------------------
Confidence 10 0012210000
Q ss_pred CcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHH
Q 001355 948 LPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQ 1027 (1093)
Q Consensus 948 l~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~ 1027 (1093)
.+.+...+..+.|.|||++|||.+|+|+||+.+++.+|+...+.+..+++...++.|+++++++++
T Consensus 624 --------------~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~ 689 (758)
T PRK11034 624 --------------NSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDW 689 (758)
T ss_pred --------------hhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHH
Confidence 000112345668999999999999999999999999999999998888887789999999999999
Q ss_pred HHhcCCchh-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEe
Q 001355 1028 ILAATWLSD-RKKAIENWIENVVLRSFYEVRRKHHFTAGSVVKLVA 1072 (1093)
Q Consensus 1028 Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~~~~~~~~~~VkLv~ 1072 (1093)
|+..+|.+. |.|.|++.|++.+.+.|.+.........+..|++..
T Consensus 690 l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il~~~~~~~~~~~v~~ 735 (758)
T PRK11034 690 LAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVAL 735 (758)
T ss_pred HHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHhCcccCCCEEEEEE
Confidence 999999765 788888888888888777776665554455666553
No 9
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.93 E-value=4.3e-25 Score=256.00 Aligned_cols=288 Identities=18% Similarity=0.200 Sum_probs=197.7
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCC--CCC--C-CCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGR--DVG--S-NSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK 756 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~--~~~--~-~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~ 756 (1093)
..+.|.+.|.+.|+||++|+..++.++.+++.++.. ... + .......+||.||+|+|||++|++||+.+ ..+
T Consensus 67 ~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~p 143 (413)
T TIGR00382 67 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---NVP 143 (413)
T ss_pred CHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---CCC
Confidence 457899999999999999999999999887766543 110 1 01123589999999999999999999877 467
Q ss_pred eEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHh-------CCceEEEEcccccccCH----------
Q 001355 757 LIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS-------KPYSVVFLEDLDKAADP---------- 819 (1093)
Q Consensus 757 fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~-------~p~~VI~LDEVDkiad~---------- 819 (1093)
|+.+++..... . ||.|.+..+.+.+.++. ...+||||||||+ +++
T Consensus 144 f~~~da~~L~~----------~-------gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdk-l~~~~~~~s~~~d 205 (413)
T TIGR00382 144 FAIADATTLTE----------A-------GYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDK-ISRKSENPSITRD 205 (413)
T ss_pred eEEechhhccc----------c-------ccccccHHHHHHHHHHhCcccHHhcccceEEecccch-hchhhcccccccc
Confidence 88777764311 2 34444333344444433 3446999999999 876
Q ss_pred ----HHHHHHhhhhcCCeEec---CCCeEeecCCcEEEEecCCCCCCCccCCCCCCCcch-HHHHHhhhhhhhhhccccc
Q 001355 820 ----IVQSSLTKAISTGKFTD---SYGRDVSISGMIFVATSTILKGKHSVHPQTTPVKFS-EEIILGAKRWQMQTAISHG 891 (1093)
Q Consensus 820 ----~vq~~Ll~aLe~Gr~~d---~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~-eekil~~~~~~l~~~i~~~ 891 (1093)
.+|+.|+++|+ |.+++ .+|+.+++.+.|+|+|+|+.. +.. ..|. -+++...+ +. +..+||.
T Consensus 206 vsg~~vq~~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilf----i~~----Gaf~g~~~i~~~r-~~-~~~~gf~ 274 (413)
T TIGR00382 206 VSGEGVQQALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILF----ICG----GAFVGLEKIIKKR-TG-KSSIGFG 274 (413)
T ss_pred ccchhHHHHHHHHhh-ccceecccCCCccccCCCeEEEEcCCcee----eec----ccccChHHHHHHH-hh-hcccccc
Confidence 69999999995 99876 678999999999999999831 110 0121 12222111 00 0123332
Q ss_pred ccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhh-c
Q 001355 892 FADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICE-N 970 (1093)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e-~ 970 (1093)
.... . .......+. .....++ .
T Consensus 275 ~~~~-------------------------------~-~~~~~~~~~-------------------------~~~~~~dl~ 297 (413)
T TIGR00382 275 AEVK-------------------------------K-KSKEKADLL-------------------------RQVEPEDLV 297 (413)
T ss_pred cccc-------------------------------c-cchhhHHHH-------------------------HHHHHHHHH
Confidence 1100 0 000000000 0000112 2
Q ss_pred cccChHHHhhccccccccCCCChHHHHHHHHHHHHHHH----HHhcCCCceeecCHHHHHHHHhcCCchh-hHHHHHHHH
Q 001355 971 SGAWLEDFFDQTDAIAVFQPLNFDLLAEKILREIQPKF----QRAFGFEVLLEIDYEILVQILAATWLSD-RKKAIENWI 1045 (1093)
Q Consensus 971 ~~~~~~efl~rId~~VvF~pld~~~l~~ii~~~i~~~~----~~~~~~~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wv 1045 (1093)
...|.|||++|||.+|+|.||+.++|.+|+...++... +.+...++.|+++++++++|+..+|.+. |+|.|++.|
T Consensus 298 ~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~ii 377 (413)
T TIGR00382 298 KFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIV 377 (413)
T ss_pred HHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHH
Confidence 44699999999999999999999999999987643333 3333469999999999999999999776 999999999
Q ss_pred HHHHHHHHHHHHh
Q 001355 1046 ENVVLRSFYEVRR 1058 (1093)
Q Consensus 1046 e~vl~~~l~e~~~ 1058 (1093)
++.+.+.+.++-.
T Consensus 378 e~~l~~~m~e~p~ 390 (413)
T TIGR00382 378 EGLLLDVMFDLPS 390 (413)
T ss_pred HHhhHHHHhhCCC
Confidence 9999999988844
No 10
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.92 E-value=4.3e-24 Score=248.88 Aligned_cols=291 Identities=18% Similarity=0.168 Sum_probs=194.2
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCC---CCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceE
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVG---SNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLI 758 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~---~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv 758 (1093)
..+.+.+.|.+.|+||++|+..++.++............ .......++||+||+|||||++|++||+.+ ..+|+
T Consensus 61 ~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~ 137 (412)
T PRK05342 61 TPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPFA 137 (412)
T ss_pred CHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCce
Confidence 567899999999999999999999998765443322100 111233579999999999999999999887 67899
Q ss_pred EeecCCccccCCCCccccCCCccccccccccchhhhHHHHH-------HHhCCceEEEEcccccccCH------------
Q 001355 759 HVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQE-------FRSKPYSVVFLEDLDKAADP------------ 819 (1093)
Q Consensus 759 ~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~ea-------l~~~p~~VI~LDEVDkiad~------------ 819 (1093)
.+|++.+.. .+ |+|.+....+... +...+++||||||||+ ++.
T Consensus 138 ~id~~~l~~----------~g-------yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdk-l~~~~~~~~~~~d~s 199 (412)
T PRK05342 138 IADATTLTE----------AG-------YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDK-IARKSENPSITRDVS 199 (412)
T ss_pred ecchhhccc----------CC-------cccchHHHHHHHHHHhccccHHHcCCcEEEEechhh-hccccCCCCcCCCcc
Confidence 999876421 23 3333322223222 3345778999999999 764
Q ss_pred --HHHHHHhhhhcCCe--EecCCCeEeecCCcEEEEecCCCCCCCccCCCCCCCcch-HHHHHhhhhhhhhhcccccccc
Q 001355 820 --IVQSSLTKAISTGK--FTDSYGRDVSISGMIFVATSTILKGKHSVHPQTTPVKFS-EEIILGAKRWQMQTAISHGFAD 894 (1093)
Q Consensus 820 --~vq~~Ll~aLe~Gr--~~d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~-eekil~~~~~~l~~~i~~~~~~ 894 (1093)
.+|+.|+++||.+. +++.+|+..++.+.++|.|+|+.. ++.+ .|. =++++..+- .+..+||....
T Consensus 200 ~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilf----i~~G----af~g~~~~~~~r~--~~~~~gf~~~~ 269 (412)
T PRK05342 200 GEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILF----ICGG----AFDGLEKIIKQRL--GKKGIGFGAEV 269 (412)
T ss_pred cHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCcee----eecc----cccCcHHHHHHHH--hhcccCCcccc
Confidence 49999999998443 245678888888999999999731 1110 111 122221110 11234442211
Q ss_pred cccCCCCcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhh-hcccc
Q 001355 895 AARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTIC-ENSGA 973 (1093)
Q Consensus 895 ~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~-e~~~~ 973 (1093)
. .+. +. .. ...+.+ +...+ .....
T Consensus 270 ~------------------------~~~--~~---~~-~~~~~~-------------------------~~~~~dL~~~g 294 (412)
T PRK05342 270 K------------------------SKK--EK---RT-EGELLK-------------------------QVEPEDLIKFG 294 (412)
T ss_pred c------------------------ccc--cc---ch-hHHHHH-------------------------hcCHHHHHHHh
Confidence 0 000 00 00 000000 00001 12346
Q ss_pred ChHHHhhccccccccCCCChHHHHHHHHHHHHHH----HHHhcCCCceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHH
Q 001355 974 WLEDFFDQTDAIAVFQPLNFDLLAEKILREIQPK----FQRAFGFEVLLEIDYEILVQILAATWLSD-RKKAIENWIENV 1048 (1093)
Q Consensus 974 ~~~efl~rId~~VvF~pld~~~l~~ii~~~i~~~----~~~~~~~~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~v 1048 (1093)
|.|||++|||.+|+|+||+.++|.+|+...++.. ...+...++.|+++++++++|+..+|.+. |+|.|++.|++.
T Consensus 295 f~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~ 374 (412)
T PRK05342 295 LIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEI 374 (412)
T ss_pred hhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence 8999999999999999999999999998533332 23333479999999999999999999776 999999999999
Q ss_pred HHHHHHHHHh
Q 001355 1049 VLRSFYEVRR 1058 (1093)
Q Consensus 1049 l~~~l~e~~~ 1058 (1093)
+.+.+.++-.
T Consensus 375 l~~~~~~~p~ 384 (412)
T PRK05342 375 LLDVMFELPS 384 (412)
T ss_pred hHHHHHhccc
Confidence 9999988854
No 11
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.5e-20 Score=204.46 Aligned_cols=289 Identities=22% Similarity=0.269 Sum_probs=197.7
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCC--CC--CCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCce
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDV--GS--NSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKL 757 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~--~~--~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~f 757 (1093)
.-+.+++.|.+.|+||+.|...++-++..+...+.... .- .+| ..+|+.||+|+|||.||+.||+.+ +-||
T Consensus 51 tP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~K--SNILLiGPTGsGKTlLAqTLAk~L---nVPF 125 (408)
T COG1219 51 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSK--SNILLIGPTGSGKTLLAQTLAKIL---NVPF 125 (408)
T ss_pred ChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeee--ccEEEECCCCCcHHHHHHHHHHHh---CCCe
Confidence 34789999999999999999999999988765443221 10 123 379999999999999999999999 7888
Q ss_pred EEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHH-------hCCceEEEEcccccccC------------
Q 001355 758 IHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR-------SKPYSVVFLEDLDKAAD------------ 818 (1093)
Q Consensus 758 v~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~-------~~p~~VI~LDEVDkiad------------ 818 (1093)
..-|+...++ .||+|.+.-..+...+. +...+||+|||||||+.
T Consensus 126 aiADATtLTE-----------------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVS 188 (408)
T COG1219 126 AIADATTLTE-----------------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVS 188 (408)
T ss_pred eeccccchhh-----------------ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccC
Confidence 8777776432 35566554444444433 44567999999999663
Q ss_pred -HHHHHHHhhhhcCCeEe---cCCCeEeecCCcEEEEecCCCCCCCccCCCCCCCcc-hHHHHHhhhhhhhhhccccccc
Q 001355 819 -PIVQSSLTKAISTGKFT---DSYGRDVSISGMIFVATSTILKGKHSVHPQTTPVKF-SEEIILGAKRWQMQTAISHGFA 893 (1093)
Q Consensus 819 -~~vq~~Ll~aLe~Gr~~---d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f-~eekil~~~~~~l~~~i~~~~~ 893 (1093)
..+|++|+++|| |.+. ..+||.......|-|-|+|+. .|+. ..| .=|+|...+. =+-.|||+..
T Consensus 189 GEGVQQALLKiiE-GTvasVPPqGGRKHP~Qe~iqvDT~NIL----FIcg----GAF~GlekiI~~R~--~~~~iGF~a~ 257 (408)
T COG1219 189 GEGVQQALLKIIE-GTVASVPPQGGRKHPQQEFIQVDTSNIL----FICG----GAFAGLEKIIKKRL--GKKGIGFGAE 257 (408)
T ss_pred chHHHHHHHHHHc-CceeccCCCCCCCCCccceEEEccccee----EEec----cccccHHHHHHHhc--cCCccccccc
Confidence 469999999998 5443 355665555555555555541 1111 112 1244433221 1224555432
Q ss_pred ccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhcccc
Q 001355 894 DAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGA 973 (1093)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~ 973 (1093)
... + ...++.. .+|- -++ .| .-.+-+
T Consensus 258 ~~~------------------------~---------~~~~~~~----~~l~---~ve------------pe--DLvkFG 283 (408)
T COG1219 258 VKS------------------------K---------SKKKEEG----ELLK---QVE------------PE--DLVKFG 283 (408)
T ss_pred ccc------------------------h---------hhhhhHH----HHHH---hcC------------hH--HHHHcC
Confidence 100 0 0000000 0000 000 00 224557
Q ss_pred ChHHHhhccccccccCCCChHHHHHHH---HHHHHHHHHHhcC-CCceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHH
Q 001355 974 WLEDFFDQTDAIAVFQPLNFDLLAEKI---LREIQPKFQRAFG-FEVLLEIDYEILVQILAATWLSD-RKKAIENWIENV 1048 (1093)
Q Consensus 974 ~~~efl~rId~~VvF~pld~~~l~~ii---~~~i~~~~~~~~~-~~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~v 1048 (1093)
++|||++|++.+..+.+|+.++|.+|+ .+.|-+++++++. .++.|+++++++..|+..+..+. |+|.++..+|..
T Consensus 284 LIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~ 363 (408)
T COG1219 284 LIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEEL 363 (408)
T ss_pred CcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 899999999999999999999999999 4578888888887 48999999999999999988766 999999999999
Q ss_pred HHHHHHHHH
Q 001355 1049 VLRSFYEVR 1057 (1093)
Q Consensus 1049 l~~~l~e~~ 1057 (1093)
|.+.++++-
T Consensus 364 lld~MfelP 372 (408)
T COG1219 364 LLDVMFELP 372 (408)
T ss_pred HHHHHhhCC
Confidence 999998884
No 12
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=9.1e-20 Score=204.67 Aligned_cols=296 Identities=18% Similarity=0.237 Sum_probs=192.4
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCC------------------C----------------C--C----C
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGR------------------D----------------V--G----S 721 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~------------------~----------------~--~----~ 721 (1093)
--+.+++.|.+.|+||+.|...++-++.++...+.. + + + +
T Consensus 135 ~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~ 214 (564)
T KOG0745|consen 135 TPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKA 214 (564)
T ss_pred ChHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhccc
Confidence 458999999999999999999998888765422111 0 0 0 0
Q ss_pred CCCC-------CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhh
Q 001355 722 NSKR-------GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVD 794 (1093)
Q Consensus 722 ~~k~-------~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~ 794 (1093)
.... ...+|+.||+|+|||.||+.||+.+ +-||+..||...+. .+|+|.+.. ..+.
T Consensus 215 ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLTQ----------AGYVGeDVE----svi~ 277 (564)
T KOG0745|consen 215 LDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLTQ----------AGYVGEDVE----SVIQ 277 (564)
T ss_pred ccccccceeeecccEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchhh----------cccccccHH----HHHH
Confidence 0000 1368999999999999999999999 88999999997543 344444332 1222
Q ss_pred HHHH----HHHhCCceEEEEccccccc-------------CHHHHHHHhhhhcCCeEecC--C-------C--eEeecCC
Q 001355 795 YIYQ----EFRSKPYSVVFLEDLDKAA-------------DPIVQSSLTKAISTGKFTDS--Y-------G--RDVSISG 846 (1093)
Q Consensus 795 ~l~e----al~~~p~~VI~LDEVDkia-------------d~~vq~~Ll~aLe~Gr~~d~--~-------G--~~V~l~n 846 (1093)
.|.. -+.+...+||||||||||. ...+|+.||+++| |.+..- + | ..|+.+|
T Consensus 278 KLl~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllE-GtvVnVpeK~~~~~~rgd~vqiDTtn 356 (564)
T KOG0745|consen 278 KLLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLE-GTVVNVPEKGSRRKPRGDTVQIDTTN 356 (564)
T ss_pred HHHHHccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhc-ccEEcccCCCCCCCCCCCeEEEeccc
Confidence 2221 1344566799999999965 1469999999998 555442 1 2 2345555
Q ss_pred cEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCC
Q 001355 847 MIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDG 926 (1093)
Q Consensus 847 aI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~ 926 (1093)
.+||+..-+ . +=||+...+ .. +-.+||++... + ++|... ..
T Consensus 357 ILFiasGAF-~--------------~Ldk~I~rR-~~-d~slGFg~~s~------------------~---~vr~~~-~~ 397 (564)
T KOG0745|consen 357 ILFIASGAF-V--------------GLDKIISRR-LD-DKSLGFGAPSS------------------K---GVRANM-AT 397 (564)
T ss_pred eEEEecccc-c--------------chHHHHHHh-hc-chhcccCCCCC------------------c---cchhhc-cc
Confidence 555553221 1 113332111 10 12456543310 0 122110 00
Q ss_pred --CCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHH---H
Q 001355 927 --DSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKI---L 1001 (1093)
Q Consensus 927 --~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii---~ 1001 (1093)
.....+.++. ..|+ .-+...-..-.++|||++|++.+|+|.+|+.+.|.+++ .
T Consensus 398 ~s~~~~~~~~~~-----~lL~-----------------~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPk 455 (564)
T KOG0745|consen 398 KSGVENDAEKRD-----ELLE-----------------KVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPK 455 (564)
T ss_pred ccCcchhHHHHH-----HHHh-----------------hccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcch
Confidence 0000000000 0000 00011234558899999999999999999999999999 4
Q ss_pred HHHHHHHHHhcC-CCceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHH
Q 001355 1002 REIQPKFQRAFG-FEVLLEIDYEILVQILAATWLSD-RKKAIENWIENVVLRSFYEV 1056 (1093)
Q Consensus 1002 ~~i~~~~~~~~~-~~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~ 1056 (1093)
+.+-.+++++++ .++.|.+.+++++.|+..+..+. ++|.++..+|..|....+++
T Consensus 456 naL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfev 512 (564)
T KOG0745|consen 456 NALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEV 512 (564)
T ss_pred hhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccC
Confidence 567888888887 49999999999999999988776 99999999999999998777
No 13
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.82 E-value=1.6e-20 Score=195.01 Aligned_cols=114 Identities=37% Similarity=0.542 Sum_probs=93.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc-cCCCceEEeecCCccccCC-CCccccCCCccccccccccchhhhHHHHHHHhCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF-GNKGKLIHVDVSSEQRVSQ-PNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKP 804 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf-gs~~~fv~id~s~~~~~~~-~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p 804 (1093)
.+++|+||+|||||++|++||+.++ +...+++.+||+.|....+ .+.+ ..+.|..++|++ ..+
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~---~~l~~~~~~~v~------------~~~ 68 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSV---SKLLGSPPGYVG------------AEE 68 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHC---HHHHHHTTCHHH------------HHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhh---hhhhhcccceee------------ccc
Confidence 5899999999999999999999999 8999999999999764111 1111 133344444322 122
Q ss_pred ceEEEEcccccccCH-----------HHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCC
Q 001355 805 YSVVFLEDLDKAADP-----------IVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTIL 856 (1093)
Q Consensus 805 ~~VI~LDEVDkiad~-----------~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~ 856 (1093)
++||||||||| +++ .+|+.|+++||+|++++.+|++++++|+|||||||++
T Consensus 69 ~gVVllDEidK-a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 69 GGVVLLDEIDK-AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp HTEEEEETGGG-CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred hhhhhhHHHhh-ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 34999999999 999 9999999999999999999999999999999999984
No 14
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.78 E-value=1.6e-18 Score=202.13 Aligned_cols=224 Identities=14% Similarity=0.153 Sum_probs=172.6
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..++|++.++..+.+.|.+... .+..+|++|++||||..+||+||+..-+.+.|||.+||+.....
T Consensus 141 ~~liG~S~am~~l~~~i~kvA~-----------s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~--- 206 (464)
T COG2204 141 GELVGESPAMQQLRRLIAKVAP-----------SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN--- 206 (464)
T ss_pred CCceecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH---
Confidence 3689999999999999887743 45689999999999999999999999889999999999985321
Q ss_pred CccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEE
Q 001355 772 NSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFV 850 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~I 850 (1093)
.+ ...+||+.+| |.|... +-.+.+....++++|||||+. ++.++|..|+++|++|.|+.-+|...---|++||
T Consensus 207 -l~--ESELFGhekGAFTGA~~--~r~G~fE~A~GGTLfLDEI~~-mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiI 280 (464)
T COG2204 207 -LL--ESELFGHEKGAFTGAIT--RRIGRFEQANGGTLFLDEIGE-MPLELQVKLLRVLQEREFERVGGNKPIKVDVRII 280 (464)
T ss_pred -HH--HHHhhcccccCcCCccc--ccCcceeEcCCceEEeecccc-CCHHHHHHHHHHHHcCeeEecCCCcccceeeEEE
Confidence 11 1578999887 555332 122344556788999999999 9999999999999999999987744444478899
Q ss_pred EecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCc
Q 001355 851 ATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPI 930 (1093)
Q Consensus 851 lTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~ 930 (1093)
.+||.-
T Consensus 281 aaT~~d-------------------------------------------------------------------------- 286 (464)
T COG2204 281 AATNRD-------------------------------------------------------------------------- 286 (464)
T ss_pred eecCcC--------------------------------------------------------------------------
Confidence 999851
Q ss_pred cchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHH
Q 001355 931 NSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPK 1007 (1093)
Q Consensus 931 ~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~ 1007 (1093)
|...+. ...|++||++|+. ..|..+||.+ +||.-++...+.+.
T Consensus 287 ---------------L~~~v~-------------------~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~ 332 (464)
T COG2204 287 ---------------LEEEVA-------------------AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRF 332 (464)
T ss_pred ---------------HHHHHH-------------------cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHH
Confidence 000011 2379999999999 5588899987 88988888888887
Q ss_pred HHHhcCCCceeecCHHHHHHHHhcCCc---hhhHHHHHHHH
Q 001355 1008 FQRAFGFEVLLEIDYEILVQILAATWL---SDRKKAIENWI 1045 (1093)
Q Consensus 1008 ~~~~~~~~~~L~Id~~vle~Ll~~~~~---~~~~r~ie~wv 1045 (1093)
..+.- .-...|++++++.|..+.|- +++++.+++.+
T Consensus 333 ~~~~~--~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~ 371 (464)
T COG2204 333 AAELG--RPPKGFSPEALAALLAYDWPGNVRELENVVERAV 371 (464)
T ss_pred HHHcC--CCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 77652 22368999999999999994 44555555543
No 15
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.78 E-value=4.3e-18 Score=195.62 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=73.1
Q ss_pred ChHHHhhccccccccCCCChHHHHHHHH---HHHHHHHHHhcC-CCceeecCHHHHHHHHhcCCc------hhhHHHHHH
Q 001355 974 WLEDFFDQTDAIAVFQPLNFDLLAEKIL---REIQPKFQRAFG-FEVLLEIDYEILVQILAATWL------SDRKKAIEN 1043 (1093)
Q Consensus 974 ~~~efl~rId~~VvF~pld~~~l~~ii~---~~i~~~~~~~~~-~~~~L~Id~~vle~Ll~~~~~------~~~~r~ie~ 1043 (1093)
+.|||.+|++.+|.+.||+.++|.+|+. +.+-++++.++. .++.|+|++++++.|+..++. .-|+|.+..
T Consensus 318 lIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrt 397 (443)
T PRK05201 318 LIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHT 397 (443)
T ss_pred ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHH
Confidence 5799999999999999999999999993 345566666665 699999999999999999875 239999999
Q ss_pred HHHHHHHHHHHHHHh
Q 001355 1044 WIENVVLRSFYEVRR 1058 (1093)
Q Consensus 1044 wve~vl~~~l~e~~~ 1058 (1093)
.+|++|.+..+++-.
T Consensus 398 I~E~~L~d~~Fe~p~ 412 (443)
T PRK05201 398 VMEKLLEDISFEAPD 412 (443)
T ss_pred HHHHHHHHHhccCCC
Confidence 999999999977743
No 16
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.78 E-value=1.1e-18 Score=200.14 Aligned_cols=207 Identities=12% Similarity=0.172 Sum_probs=161.2
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPN 772 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~ 772 (1093)
.|||++.++..+...|.... +.+..+|+.|++||||..+||+||+..-+..++||.+||+...+
T Consensus 224 ~iIG~S~am~~ll~~i~~VA-----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe----- 287 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVVA-----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE----- 287 (550)
T ss_pred cceecCHHHHHHHHHHHHHh-----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch-----
Confidence 69999999999998887663 34568999999999999999999999999999999999997532
Q ss_pred ccccCCCccccccccccchhhhHHHHHHHhC-------CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecC
Q 001355 773 SIFDCQNIDFCDCKLRGKVLVDYIYQEFRSK-------PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSIS 845 (1093)
Q Consensus 773 si~~~~~l~G~~~g~~g~~~~~~l~eal~~~-------p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~ 845 (1093)
++.+ ..+||+..| .|++|+... .++.+|||||.. ++..+|..|+++|++|.|..-+|...---
T Consensus 288 sLlE-SELFGHeKG--------AFTGA~~~r~GrFElAdGGTLFLDEIGe-lPL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 288 SLLE-SELFGHEKG--------AFTGAINTRRGRFELADGGTLFLDEIGE-LPLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred HHHH-HHHhccccc--------ccccchhccCcceeecCCCeEechhhcc-CCHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 1221 578999887 445555543 446999999999 99999999999999999998777443344
Q ss_pred CcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCC
Q 001355 846 GMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDD 925 (1093)
Q Consensus 846 naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~ 925 (1093)
+++||++||.
T Consensus 358 DVRiIAATNR---------------------------------------------------------------------- 367 (550)
T COG3604 358 DVRVIAATNR---------------------------------------------------------------------- 367 (550)
T ss_pred EEEEEeccch----------------------------------------------------------------------
Confidence 6789999994
Q ss_pred CCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccc-cccCCCCh--HHHHHHHHH
Q 001355 926 GDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAI-AVFQPLNF--DLLAEKILR 1002 (1093)
Q Consensus 926 ~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~-VvF~pld~--~~l~~ii~~ 1002 (1093)
||.+.|.++ .|+.||++|++.. +..+||.+ +|+.-....
T Consensus 368 -------------------DL~~~V~~G-------------------~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~ 409 (550)
T COG3604 368 -------------------DLEEMVRDG-------------------EFRADLYYRLSVFPLELPPLRERPEDIPLLAGY 409 (550)
T ss_pred -------------------hHHHHHHcC-------------------cchhhhhhcccccccCCCCcccCCccHHHHHHH
Confidence 111112222 7899999999954 77788877 677666666
Q ss_pred HHHHHHHHhcCCCc-eeecCHHHHHHHHhcCCchh
Q 001355 1003 EIQPKFQRAFGFEV-LLEIDYEILVQILAATWLSD 1036 (1093)
Q Consensus 1003 ~i~~~~~~~~~~~~-~L~Id~~vle~Ll~~~~~~~ 1036 (1093)
.+.+...+ .+. .+.++.++++.|..+.|-.+
T Consensus 410 Fle~~~~~---~gr~~l~ls~~Al~~L~~y~wPGN 441 (550)
T COG3604 410 FLEKFRRR---LGRAILSLSAEALELLSSYEWPGN 441 (550)
T ss_pred HHHHHHHh---cCCcccccCHHHHHHHHcCCCCCc
Confidence 66555444 344 68999999999999999543
No 17
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.76 E-value=1.5e-17 Score=191.00 Aligned_cols=84 Identities=11% Similarity=0.157 Sum_probs=73.2
Q ss_pred ChHHHhhccccccccCCCChHHHHHHHH---HHHHHHHHHhcC-CCceeecCHHHHHHHHhcCCc-----hh-hHHHHHH
Q 001355 974 WLEDFFDQTDAIAVFQPLNFDLLAEKIL---REIQPKFQRAFG-FEVLLEIDYEILVQILAATWL-----SD-RKKAIEN 1043 (1093)
Q Consensus 974 ~~~efl~rId~~VvF~pld~~~l~~ii~---~~i~~~~~~~~~-~~~~L~Id~~vle~Ll~~~~~-----~~-~~r~ie~ 1043 (1093)
+.|||.+|++.+|.+.||+.++|.+|+. +.+-++++.++. .++.|+|+++++++|+..++. .+ |+|.+..
T Consensus 316 lIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrt 395 (441)
T TIGR00390 316 LIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHT 395 (441)
T ss_pred ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHH
Confidence 5899999999999999999999999993 456666777766 599999999999999999874 23 9999999
Q ss_pred HHHHHHHHHHHHHH
Q 001355 1044 WIENVVLRSFYEVR 1057 (1093)
Q Consensus 1044 wve~vl~~~l~e~~ 1057 (1093)
.+|++|.+..+++-
T Consensus 396 ilE~~l~d~~fe~p 409 (441)
T TIGR00390 396 VLERLLEDISFEAP 409 (441)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999987763
No 18
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.74 E-value=8.7e-18 Score=195.49 Aligned_cols=227 Identities=15% Similarity=0.187 Sum_probs=165.1
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..|+|.+.++..+.+.+.+. ++.+..+|+.|++||||..+|++||...-+.+.+||.|||+.....
T Consensus 245 ~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~--- 310 (560)
T COG3829 245 DDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET--- 310 (560)
T ss_pred hhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH---
Confidence 46899997666555544433 2456789999999999999999999999999999999999974321
Q ss_pred CccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEE
Q 001355 772 NSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFV 850 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~I 850 (1093)
+.+ ..+|||..| |.|....++ .+.+....++.||||||.. ++...|..||++|+++.|..-+|...-..+++||
T Consensus 311 --LlE-SELFGye~GAFTGA~~~GK-~GlfE~A~gGTLFLDEIge-mpl~LQaKLLRVLQEkei~rvG~t~~~~vDVRII 385 (560)
T COG3829 311 --LLE-SELFGYEKGAFTGASKGGK-PGLFELANGGTLFLDEIGE-MPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRII 385 (560)
T ss_pred --HHH-HHHhCcCCccccccccCCC-CcceeeccCCeEEehhhcc-CCHHHHHHHHHHHhhceEEecCCCCceeeEEEEE
Confidence 111 578999887 444322111 1222334567999999999 9999999999999999999887755555577799
Q ss_pred EecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCc
Q 001355 851 ATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPI 930 (1093)
Q Consensus 851 lTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~ 930 (1093)
.+||.- - +++
T Consensus 386 AATN~n---------------L-~~~------------------------------------------------------ 395 (560)
T COG3829 386 AATNRN---------------L-EKM------------------------------------------------------ 395 (560)
T ss_pred eccCcC---------------H-HHH------------------------------------------------------
Confidence 999951 0 010
Q ss_pred cchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHH
Q 001355 931 NSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPK 1007 (1093)
Q Consensus 931 ~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~ 1007 (1093)
++ ...|+.||++|++ ..|..+||.+ +||..++...|.+.
T Consensus 396 -------------------i~-------------------~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~ 437 (560)
T COG3829 396 -------------------IA-------------------EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKF 437 (560)
T ss_pred -------------------Hh-------------------cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHH
Confidence 11 1278999999999 5588899977 88888887777766
Q ss_pred HHHhcCCCcee-ecCHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 001355 1008 FQRAFGFEVLL-EIDYEILVQILAATWLSDRKKAIENWIENVV 1049 (1093)
Q Consensus 1008 ~~~~~~~~~~L-~Id~~vle~Ll~~~~~~~~~r~ie~wve~vl 1049 (1093)
.+++ +-.+ .|+++++..|+.+.|-.+. |.+++.||..+
T Consensus 438 s~~~---~~~v~~ls~~a~~~L~~y~WPGNV-RELeNviER~v 476 (560)
T COG3829 438 SRRY---GRNVKGLSPDALALLLRYDWPGNV-RELENVIERAV 476 (560)
T ss_pred HHHc---CCCcccCCHHHHHHHHhCCCCchH-HHHHHHHHHHH
Confidence 5554 2233 4999999999999995432 33444444443
No 19
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=3.7e-16 Score=196.87 Aligned_cols=243 Identities=17% Similarity=0.235 Sum_probs=175.2
Q ss_pred CHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceE
Q 001355 679 DPRDYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLI 758 (1093)
Q Consensus 679 d~e~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv 758 (1093)
+..+++.+.+.|.+.++||++++..|.+.+........ .+ +-.++|+||+|||||++|++||+.+ ..+|+
T Consensus 307 ~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~-~~------~~~lll~GppG~GKT~lAk~iA~~l---~~~~~ 376 (775)
T TIGR00763 307 ENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGK-MK------GPILCLVGPPGVGKTSLGKSIAKAL---NRKFV 376 (775)
T ss_pred chhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcC-CC------CceEEEECCCCCCHHHHHHHHHHHh---cCCeE
Confidence 35688999999999999999999999987765543111 11 1269999999999999999999998 56889
Q ss_pred EeecCCccccCCCCcccc-CCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHH----HHHHhhhhcC--
Q 001355 759 HVDVSSEQRVSQPNSIFD-CQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIV----QSSLTKAIST-- 831 (1093)
Q Consensus 759 ~id~s~~~~~~~~~si~~-~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~v----q~~Ll~aLe~-- 831 (1093)
.++++...+.. .+.+ ...|+|...|. ..+.+..+...+| ||||||||+ +++.. .+.|++.|+.
T Consensus 377 ~i~~~~~~~~~---~i~g~~~~~~g~~~g~----i~~~l~~~~~~~~--villDEidk-~~~~~~~~~~~aLl~~ld~~~ 446 (775)
T TIGR00763 377 RFSLGGVRDEA---EIRGHRRTYVGAMPGR----IIQGLKKAKTKNP--LFLLDEIDK-IGSSFRGDPASALLEVLDPEQ 446 (775)
T ss_pred EEeCCCcccHH---HHcCCCCceeCCCCch----HHHHHHHhCcCCC--EEEEechhh-cCCccCCCHHHHHHHhcCHHh
Confidence 99887532211 0111 12344444431 2233333333333 999999999 86543 4789999984
Q ss_pred -CeEecCC-CeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCC
Q 001355 832 -GKFTDSY-GRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRK 909 (1093)
Q Consensus 832 -Gr~~d~~-G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 909 (1093)
+.|.|.. +..+++++++||+|||..
T Consensus 447 ~~~f~d~~~~~~~d~s~v~~I~TtN~~----------------------------------------------------- 473 (775)
T TIGR00763 447 NNAFSDHYLDVPFDLSKVIFIATANSI----------------------------------------------------- 473 (775)
T ss_pred cCccccccCCceeccCCEEEEEecCCc-----------------------------------------------------
Confidence 6777754 678899999999999941
Q ss_pred CCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccC
Q 001355 910 ENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQ 989 (1093)
Q Consensus 910 ~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~ 989 (1093)
..+.++|++|++ +|.|+
T Consensus 474 --------------------------------------------------------------~~i~~~L~~R~~-vi~~~ 490 (775)
T TIGR00763 474 --------------------------------------------------------------DTIPRPLLDRME-VIELS 490 (775)
T ss_pred --------------------------------------------------------------hhCCHHHhCCee-EEecC
Confidence 023467889995 78999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcC-CCceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHHHh
Q 001355 990 PLNFDLLAEKILREIQPKFQRAFG-FEVLLEIDYEILVQILAATWLSD-RKKAIENWIENVVLRSFYEVRR 1058 (1093)
Q Consensus 990 pld~~~l~~ii~~~i~~~~~~~~~-~~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~ 1058 (1093)
+++.++..+|+...+.....+..+ ....+.++++++++|+. .|.++ +.|.+++.+++++.....++-.
T Consensus 491 ~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~i~~~~~~~~~~~~~ 560 (775)
T TIGR00763 491 GYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIK-YYTREAGVRNLERQIEKICRKAAVKLVE 560 (775)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHH-hcChhcCChHHHHHHHHHHHHHHHHHHh
Confidence 999999999998877554444333 23358999999999998 58766 7888888888888777666543
No 20
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.69 E-value=2.8e-16 Score=179.39 Aligned_cols=223 Identities=17% Similarity=0.191 Sum_probs=160.5
Q ss_pred cCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCc
Q 001355 694 VGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNS 773 (1093)
Q Consensus 694 ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~s 773 (1093)
++|++.++..+...+.+... .+.++||.|++||||+.+|++||........+|+.+||+......
T Consensus 1 liG~S~~m~~~~~~~~~~a~-----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~---- 65 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP-----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENL---- 65 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHH----
Confidence 57899888888888877642 335799999999999999999999887788899999999743210
Q ss_pred cccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEe
Q 001355 774 IFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVAT 852 (1093)
Q Consensus 774 i~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlT 852 (1093)
. ...+||+..| |.|... .-.+.+....+++||||||+. ++..+|..|+++|++|.+...++....-.+++||++
T Consensus 66 -l-~~~lfG~~~g~~~ga~~--~~~G~~~~a~gGtL~Ldei~~-L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~a 140 (329)
T TIGR02974 66 -L-DSELFGHEAGAFTGAQK--RHQGRFERADGGTLFLDELAT-ASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCA 140 (329)
T ss_pred -H-HHHHhccccccccCccc--ccCCchhhCCCCEEEeCChHh-CCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEe
Confidence 0 0345666544 222211 111223445678999999999 999999999999999998876654444457889999
Q ss_pred cCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCccc
Q 001355 853 STILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINS 932 (1093)
Q Consensus 853 SN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~ 932 (1093)
|+.. . + .
T Consensus 141 t~~~---l------------~-~--------------------------------------------------------- 147 (329)
T TIGR02974 141 TNAD---L------------P-A--------------------------------------------------------- 147 (329)
T ss_pred chhh---H------------H-H---------------------------------------------------------
Confidence 8841 0 0 0
Q ss_pred hhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHHHH
Q 001355 933 QKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPKFQ 1009 (1093)
Q Consensus 933 ~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~~~ 1009 (1093)
.+ ....|.++|++|+. ..|.++||.. +||..++...+.....
T Consensus 148 ----------------~~-------------------~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~ 192 (329)
T TIGR02974 148 ----------------LA-------------------AEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMAR 192 (329)
T ss_pred ----------------Hh-------------------hcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 00 02268899999996 6899999986 8888888887777554
Q ss_pred HhcCCCceeecCHHHHHHHHhcCCch---hhHHHHHHHH
Q 001355 1010 RAFGFEVLLEIDYEILVQILAATWLS---DRKKAIENWI 1045 (1093)
Q Consensus 1010 ~~~~~~~~L~Id~~vle~Ll~~~~~~---~~~r~ie~wv 1045 (1093)
+. +..+...|++++++.|..+.|-. ++++.|++.+
T Consensus 193 ~~-~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~ 230 (329)
T TIGR02974 193 EL-GLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSV 230 (329)
T ss_pred Hh-CCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 43 22222579999999999999954 3555555544
No 21
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.66 E-value=3.2e-15 Score=187.19 Aligned_cols=240 Identities=16% Similarity=0.193 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEE
Q 001355 680 PRDYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIH 759 (1093)
Q Consensus 680 ~e~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~ 759 (1093)
..+++...+.|.+.++|++++.+.|.+.+..... .... +. -.++|+||+|+|||.+|+.||+.+ ..+|++
T Consensus 310 ~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~-~~~~-----~g-~~i~l~GppG~GKTtl~~~ia~~l---~~~~~~ 379 (784)
T PRK10787 310 KKDLRQAQEILDTDHYGLERVKDRILEYLAVQSR-VNKI-----KG-PILCLVGPPGVGKTSLGQSIAKAT---GRKYVR 379 (784)
T ss_pred cccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh-cccC-----CC-ceEEEECCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 3488899999999999999999999988875432 1111 11 258999999999999999999987 467888
Q ss_pred eecCCccccCCCCccccC-CCccccccccccchhhhHHHHHHHhC--CceEEEEcccccccCHHH----HHHHhhhhcCC
Q 001355 760 VDVSSEQRVSQPNSIFDC-QNIDFCDCKLRGKVLVDYIYQEFRSK--PYSVVFLEDLDKAADPIV----QSSLTKAISTG 832 (1093)
Q Consensus 760 id~s~~~~~~~~~si~~~-~~l~G~~~g~~g~~~~~~l~eal~~~--p~~VI~LDEVDkiad~~v----q~~Ll~aLe~G 832 (1093)
++++...+. ..+.+. ..|.|..+| .+..++... ...||||||||+ +.... +..|+++++.+
T Consensus 380 i~~~~~~d~---~~i~g~~~~~~g~~~G--------~~~~~l~~~~~~~~villDEidk-~~~~~~g~~~~aLlevld~~ 447 (784)
T PRK10787 380 MALGGVRDE---AEIRGHRRTYIGSMPG--------KLIQKMAKVGVKNPLFLLDEIDK-MSSDMRGDPASALLEVLDPE 447 (784)
T ss_pred EEcCCCCCH---HHhccchhccCCCCCc--------HHHHHHHhcCCCCCEEEEEChhh-cccccCCCHHHHHHHHhccc
Confidence 888763221 111111 234444333 333333321 234999999999 87765 58999999875
Q ss_pred ---eEecCC-CeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCC
Q 001355 833 ---KFTDSY-GRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPR 908 (1093)
Q Consensus 833 ---r~~d~~-G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 908 (1093)
.|.|.. .-.+++++++||+|+|..
T Consensus 448 ~~~~~~d~~~~~~~dls~v~~i~TaN~~---------------------------------------------------- 475 (784)
T PRK10787 448 QNVAFSDHYLEVDYDLSDVMFVATSNSM---------------------------------------------------- 475 (784)
T ss_pred cEEEEecccccccccCCceEEEEcCCCC----------------------------------------------------
Confidence 566644 356789999999999841
Q ss_pred CCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhcccccccc
Q 001355 909 KENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVF 988 (1093)
Q Consensus 909 ~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF 988 (1093)
.+.+.|++|+. +|.|
T Consensus 476 ----------------------------------------------------------------~i~~aLl~R~~-ii~~ 490 (784)
T PRK10787 476 ----------------------------------------------------------------NIPAPLLDRME-VIRL 490 (784)
T ss_pred ----------------------------------------------------------------CCCHHHhccee-eeec
Confidence 12467899995 8999
Q ss_pred CCCChHHHHHHHHHHHH-HHHHHhcCCCceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHHHhh
Q 001355 989 QPLNFDLLAEKILREIQ-PKFQRAFGFEVLLEIDYEILVQILAATWLSD-RKKAIENWIENVVLRSFYEVRRK 1059 (1093)
Q Consensus 989 ~pld~~~l~~ii~~~i~-~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~~ 1059 (1093)
.+++.+++.+|+...+. +..++.--.+..+.++++++++|+. .|.++ |.|.+++.|++.+...+.+...+
T Consensus 491 ~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt~e~GaR~LeR~I~~i~r~~l~~~~~~ 562 (784)
T PRK10787 491 SGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGVRSLEREISKLCRKAVKQLLLD 562 (784)
T ss_pred CCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH-hCCcccCCcHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998886 4445542245679999999999997 77666 88888888888887777766544
No 22
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.7e-15 Score=180.10 Aligned_cols=245 Identities=18% Similarity=0.235 Sum_probs=185.3
Q ss_pred CHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceE
Q 001355 679 DPRDYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLI 758 (1093)
Q Consensus 679 d~e~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv 758 (1093)
+.-+++...+.|.+..+|-+++.+.|.+.+.-.... .+-++ -.++|.||||||||.+++.||+.+ +..|+
T Consensus 310 ~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~-~~~kG------pILcLVGPPGVGKTSLgkSIA~al---~Rkfv 379 (782)
T COG0466 310 DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLT-KKLKG------PILCLVGPPGVGKTSLGKSIAKAL---GRKFV 379 (782)
T ss_pred hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHh-ccCCC------cEEEEECCCCCCchhHHHHHHHHh---CCCEE
Confidence 445889999999999999999999999998865432 11112 359999999999999999999999 78999
Q ss_pred EeecCCccccCCCCcccc-CCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHH----HHHHhhhhc---
Q 001355 759 HVDVSSEQRVSQPNSIFD-CQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIV----QSSLTKAIS--- 830 (1093)
Q Consensus 759 ~id~s~~~~~~~~~si~~-~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~v----q~~Ll~aLe--- 830 (1093)
++.++...+..+ +-| ...|+|+.+| ..++.+..+-..|| |++|||||| +..+. -.+||+.|+
T Consensus 380 R~sLGGvrDEAE---IRGHRRTYIGamPG----rIiQ~mkka~~~NP--v~LLDEIDK-m~ss~rGDPaSALLEVLDPEQ 449 (782)
T COG0466 380 RISLGGVRDEAE---IRGHRRTYIGAMPG----KIIQGMKKAGVKNP--VFLLDEIDK-MGSSFRGDPASALLEVLDPEQ 449 (782)
T ss_pred EEecCccccHHH---hccccccccccCCh----HHHHHHHHhCCcCC--eEEeechhh-ccCCCCCChHHHHHhhcCHhh
Confidence 999997543221 222 2578888887 34455555555667 999999999 76443 357888885
Q ss_pred CCeEecCC-CeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCC
Q 001355 831 TGKFTDSY-GRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRK 909 (1093)
Q Consensus 831 ~Gr~~d~~-G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 909 (1093)
+..|.|.. ...+|+++++||+|+|.. .
T Consensus 450 N~~F~DhYLev~yDLS~VmFiaTANsl---~------------------------------------------------- 477 (782)
T COG0466 450 NNTFSDHYLEVPYDLSKVMFIATANSL---D------------------------------------------------- 477 (782)
T ss_pred cCchhhccccCccchhheEEEeecCcc---c-------------------------------------------------
Confidence 56777755 467899999999999951 0
Q ss_pred CCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccC
Q 001355 910 ENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQ 989 (1093)
Q Consensus 910 ~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~ 989 (1093)
.....|++|+ ++|.+.
T Consensus 478 ---------------------------------------------------------------tIP~PLlDRM-EiI~ls 493 (782)
T COG0466 478 ---------------------------------------------------------------TIPAPLLDRM-EVIRLS 493 (782)
T ss_pred ---------------------------------------------------------------cCChHHhcce-eeeeec
Confidence 1234678888 489999
Q ss_pred CCChHHHHHHHHHHHHHHHHHhcC-CCceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHHHhhc
Q 001355 990 PLNFDLLAEKILREIQPKFQRAFG-FEVLLEIDYEILVQILAATWLSD-RKKAIENWIENVVLRSFYEVRRKH 1060 (1093)
Q Consensus 990 pld~~~l~~ii~~~i~~~~~~~~~-~~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~~~ 1060 (1093)
-+..++-.+|..+.+-...-+-.| ..-.|.|+++++..|..+ |.++ |.|.+++.|.++.-....++-.+-
T Consensus 494 gYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~-YTREAGVR~LeR~i~ki~RK~~~~i~~~~ 565 (782)
T COG0466 494 GYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRY-YTREAGVRNLEREIAKICRKAAKKILLKK 565 (782)
T ss_pred CCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHH-HhHhhhhhHHHHHHHHHHHHHHHHHHhcC
Confidence 999999888887765444333333 344699999999999986 6666 889999999999888887776643
No 23
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.3e-15 Score=176.45 Aligned_cols=242 Identities=17% Similarity=0.261 Sum_probs=178.9
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
++..-.+.|.+..+|.+++.+.|.+.|.-++....- .+-.++|+||||+|||.+|+.||+.+ +..|+++.
T Consensus 401 dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~-------qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkFfRfS 470 (906)
T KOG2004|consen 401 DLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSV-------QGKILCFVGPPGVGKTSIAKSIARAL---NRKFFRFS 470 (906)
T ss_pred hHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccC-------CCcEEEEeCCCCCCcccHHHHHHHHh---CCceEEEe
Confidence 667888899999999999999999999988762221 12369999999999999999999999 78899999
Q ss_pred cCCccccCCCCccccC-CCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCH----HHHHHHhhhhc---CCe
Q 001355 762 VSSEQRVSQPNSIFDC-QNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADP----IVQSSLTKAIS---TGK 833 (1093)
Q Consensus 762 ~s~~~~~~~~~si~~~-~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~----~vq~~Ll~aLe---~Gr 833 (1093)
.+...+..+ |.|. ..|+|+.+| ..+++|...-.+|| +|+|||||| ... +--.+|+++|+ +..
T Consensus 471 vGG~tDvAe---IkGHRRTYVGAMPG----kiIq~LK~v~t~NP--liLiDEvDK-lG~g~qGDPasALLElLDPEQNan 540 (906)
T KOG2004|consen 471 VGGMTDVAE---IKGHRRTYVGAMPG----KIIQCLKKVKTENP--LILIDEVDK-LGSGHQGDPASALLELLDPEQNAN 540 (906)
T ss_pred ccccccHHh---hcccceeeeccCCh----HHHHHHHhhCCCCc--eEEeehhhh-hCCCCCCChHHHHHHhcChhhccc
Confidence 988654332 3332 578888887 34455544444566 999999999 643 23457888886 455
Q ss_pred EecCC-CeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCC
Q 001355 834 FTDSY-GRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENS 912 (1093)
Q Consensus 834 ~~d~~-G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s 912 (1093)
|.|.. ...+++++++||+|.|.- +
T Consensus 541 FlDHYLdVp~DLSkVLFicTAN~i---d---------------------------------------------------- 565 (906)
T KOG2004|consen 541 FLDHYLDVPVDLSKVLFICTANVI---D---------------------------------------------------- 565 (906)
T ss_pred hhhhccccccchhheEEEEecccc---c----------------------------------------------------
Confidence 66544 478999999999999951 0
Q ss_pred CchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCC
Q 001355 913 NPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLN 992 (1093)
Q Consensus 913 ~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld 992 (1093)
...+.|++|+ ++|...-+.
T Consensus 566 ------------------------------------------------------------tIP~pLlDRM-EvIelsGYv 584 (906)
T KOG2004|consen 566 ------------------------------------------------------------TIPPPLLDRM-EVIELSGYV 584 (906)
T ss_pred ------------------------------------------------------------cCChhhhhhh-heeeccCcc
Confidence 2245677777 477788888
Q ss_pred hHHHHHHHHHHHHHHHHHhcC-CCceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHHHhhc
Q 001355 993 FDLLAEKILREIQPKFQRAFG-FEVLLEIDYEILVQILAATWLSD-RKKAIENWIENVVLRSFYEVRRKH 1060 (1093)
Q Consensus 993 ~~~l~~ii~~~i~~~~~~~~~-~~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~~~ 1060 (1093)
.++-.+|....+-....+--| ..-.+.|.+.++.-|... |-++ |.|.+++.|+.++-..-.++-.+.
T Consensus 585 ~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~-YcrEaGVRnLqk~iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 585 AEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIER-YCREAGVRNLQKQIEKICRKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888887776555444333 233589999999999986 4454 888999999999877765555544
No 24
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.63 E-value=1.7e-15 Score=184.01 Aligned_cols=223 Identities=14% Similarity=0.169 Sum_probs=159.9
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..++|++.++..+.+.+.+... .+.+|||+|++||||+.+|++||+...+...+|+.+||+......
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~-- 262 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVAR-----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL-- 262 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH--
Confidence 4789999999988888877642 235799999999999999999999988888899999999753210
Q ss_pred CccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEE
Q 001355 772 NSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFV 850 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~I 850 (1093)
+ ...+||+..| |.|... .-.+.+....+++||||||+. +++..|..|+++|++|.+...+|....-.+++||
T Consensus 263 --~--~~~lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~-L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 335 (534)
T TIGR01817 263 --L--ESELFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGE-ISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLV 335 (534)
T ss_pred --H--HHHHcCCCCCccCCCCc--CCCCcccccCCCeEEEechhh-CCHHHHHHHHHHHhcCcEEECCCCceEeecEEEE
Confidence 0 0245565543 222110 001122334578999999999 9999999999999999988655533333467799
Q ss_pred EecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCc
Q 001355 851 ATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPI 930 (1093)
Q Consensus 851 lTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~ 930 (1093)
+||+.. .++ +
T Consensus 336 ~~s~~~---------------l~~-~------------------------------------------------------ 345 (534)
T TIGR01817 336 AATNRD---------------LEE-A------------------------------------------------------ 345 (534)
T ss_pred EeCCCC---------------HHH-H------------------------------------------------------
Confidence 998841 000 0
Q ss_pred cchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHH
Q 001355 931 NSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPK 1007 (1093)
Q Consensus 931 ~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~ 1007 (1093)
-....|.++|++|+. ..|..+||.. +||..++...+...
T Consensus 346 --------------------------------------~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~ 387 (534)
T TIGR01817 346 --------------------------------------VAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKF 387 (534)
T ss_pred --------------------------------------HHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHH
Confidence 002268899999998 4688999984 88988888888775
Q ss_pred HHHhcCCCceeecCHHHHHHHHhcCCch---hhHHHHHHHH
Q 001355 1008 FQRAFGFEVLLEIDYEILVQILAATWLS---DRKKAIENWI 1045 (1093)
Q Consensus 1008 ~~~~~~~~~~L~Id~~vle~Ll~~~~~~---~~~r~ie~wv 1045 (1093)
.++. +..+.|++++++.|..+.|-. ++++.|++.+
T Consensus 388 ~~~~---~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~ 425 (534)
T TIGR01817 388 NREN---GRPLTITPSAIRVLMSCKWPGNVRELENCLERTA 425 (534)
T ss_pred HHHc---CCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 5543 223689999999999999954 3555555554
No 25
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.62 E-value=4.4e-15 Score=169.62 Aligned_cols=225 Identities=16% Similarity=0.177 Sum_probs=158.8
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.++|.+.++..+.+.+.+... .+.+++++|++||||+.+|++||........+|+.+||+......
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~-----------~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~-- 72 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL-- 72 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH--
Confidence 4589999999988888887742 235799999999999999999998877778899999999753210
Q ss_pred CccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEE
Q 001355 772 NSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFV 850 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~I 850 (1093)
+ ...+||...+ |.|... .-.+.+....+++|||||||. ++..+|..|+++|++|.+...++...--.+++||
T Consensus 73 --~--~~~lfg~~~~~~~g~~~--~~~g~l~~a~gGtL~l~~i~~-L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI 145 (326)
T PRK11608 73 --L--DSELFGHEAGAFTGAQK--RHPGRFERADGGTLFLDELAT-APMLVQEKLLRVIEYGELERVGGSQPLQVNVRLV 145 (326)
T ss_pred --H--HHHHccccccccCCccc--ccCCchhccCCCeEEeCChhh-CCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEE
Confidence 0 0245555433 222111 011223445678999999999 9999999999999999987655433222467899
Q ss_pred EecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCc
Q 001355 851 ATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPI 930 (1093)
Q Consensus 851 lTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~ 930 (1093)
+||+.. . + .+
T Consensus 146 ~~s~~~---l------------~-~l------------------------------------------------------ 155 (326)
T PRK11608 146 CATNAD---L------------P-AM------------------------------------------------------ 155 (326)
T ss_pred EeCchh---H------------H-HH------------------------------------------------------
Confidence 988741 0 0 00
Q ss_pred cchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHH
Q 001355 931 NSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPK 1007 (1093)
Q Consensus 931 ~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~ 1007 (1093)
+ ....|.++|++++. ..|..+||.. +||..++...+...
T Consensus 156 -------------------~-------------------~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~ 197 (326)
T PRK11608 156 -------------------V-------------------AEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQM 197 (326)
T ss_pred -------------------H-------------------HcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHH
Confidence 0 02267899999996 6899999987 78888888777665
Q ss_pred HHHhcCCCceeecCHHHHHHHHhcCCchh---hHHHHHHHH
Q 001355 1008 FQRAFGFEVLLEIDYEILVQILAATWLSD---RKKAIENWI 1045 (1093)
Q Consensus 1008 ~~~~~~~~~~L~Id~~vle~Ll~~~~~~~---~~r~ie~wv 1045 (1093)
..++ +..+...|++++++.|..+.|-.+ +++.+++.+
T Consensus 198 ~~~~-~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~ 237 (326)
T PRK11608 198 CREL-GLPLFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 (326)
T ss_pred HHHh-CCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 4432 333235799999999999999543 555555443
No 26
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.61 E-value=5.5e-15 Score=177.77 Aligned_cols=222 Identities=10% Similarity=0.098 Sum_probs=160.8
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..++|++.++..+...+.+... .+.++|++|++||||+.+|++||........+|+.+||+...+.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~-----------~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~--- 277 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR-----------SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES--- 277 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh---
Confidence 3589999999988888877633 34579999999999999999999988788899999999975321
Q ss_pred CccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEE
Q 001355 772 NSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFV 850 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~I 850 (1093)
.. ...+||+..| |.|....+ -.+.+....+++||||||+. ++...|..|+++|+++.+...++...--.++.+|
T Consensus 278 --ll-eseLFG~~~gaftga~~~~-~~Gl~e~A~gGTLfLdeI~~-Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiI 352 (526)
T TIGR02329 278 --LL-EAELFGYEEGAFTGARRGG-RTGLIEAAHRGTLFLDEIGE-MPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVV 352 (526)
T ss_pred --HH-HHHhcCCcccccccccccc-cccchhhcCCceEEecChHh-CCHHHHHHHHHHHhcCcEEecCCCceeeecceEE
Confidence 11 1367787665 33321111 11223345578999999999 9999999999999999988755533333467799
Q ss_pred EecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCc
Q 001355 851 ATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPI 930 (1093)
Q Consensus 851 lTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~ 930 (1093)
++|+.. . +
T Consensus 353 aat~~~---l------------~--------------------------------------------------------- 360 (526)
T TIGR02329 353 AATHCA---L------------T--------------------------------------------------------- 360 (526)
T ss_pred eccCCC---H------------H---------------------------------------------------------
Confidence 998841 0 0
Q ss_pred cchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHH
Q 001355 931 NSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPK 1007 (1093)
Q Consensus 931 ~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~ 1007 (1093)
..+ ....|.++|++|+. ..|..+||.. +|+..++...+...
T Consensus 361 -----------------~~v-------------------~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~ 404 (526)
T TIGR02329 361 -----------------TAV-------------------QQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQA 404 (526)
T ss_pred -----------------HHh-------------------hhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHH
Confidence 000 01268899999998 7799999988 78888888888775
Q ss_pred HHHhcCCCceeecCHHHHHH-------HHhcCCch---hhHHHHHHHH
Q 001355 1008 FQRAFGFEVLLEIDYEILVQ-------ILAATWLS---DRKKAIENWI 1045 (1093)
Q Consensus 1008 ~~~~~~~~~~L~Id~~vle~-------Ll~~~~~~---~~~r~ie~wv 1045 (1093)
..+. .+.++++++.. |..+.|-. ++++.+++.+
T Consensus 405 ~~~~-----~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~ 447 (526)
T TIGR02329 405 AAAL-----RLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLA 447 (526)
T ss_pred HHHc-----CCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 4432 24588888888 99999953 4555555544
No 27
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.1e-14 Score=160.02 Aligned_cols=84 Identities=8% Similarity=0.140 Sum_probs=70.7
Q ss_pred ChHHHhhccccccccCCCChHHHHHHHH---HHHHHHHHHhcC-CCceeecCHHHHHHHHhcCCch----h--hHHHHHH
Q 001355 974 WLEDFFDQTDAIAVFQPLNFDLLAEKIL---REIQPKFQRAFG-FEVLLEIDYEILVQILAATWLS----D--RKKAIEN 1043 (1093)
Q Consensus 974 ~~~efl~rId~~VvF~pld~~~l~~ii~---~~i~~~~~~~~~-~~~~L~Id~~vle~Ll~~~~~~----~--~~r~ie~ 1043 (1093)
++|||-+|++..|.+++|+.+++.+|+. ..+-++++.++. .++.|.+++++++.|+..+|.- + |+|-+..
T Consensus 319 LiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhT 398 (444)
T COG1220 319 LIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHT 398 (444)
T ss_pred cChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHH
Confidence 4799999999999999999999999994 356677777766 5999999999999999999921 1 8888999
Q ss_pred HHHHHHHHHHHHHH
Q 001355 1044 WIENVVLRSFYEVR 1057 (1093)
Q Consensus 1044 wve~vl~~~l~e~~ 1057 (1093)
.+|.+|....+++-
T Consensus 399 vlErlLediSFeA~ 412 (444)
T COG1220 399 VLERLLEDISFEAP 412 (444)
T ss_pred HHHHHHHHhCccCC
Confidence 99988887766653
No 28
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.60 E-value=7.7e-15 Score=176.42 Aligned_cols=145 Identities=11% Similarity=0.096 Sum_probs=107.8
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHH--------hccCCCceEEeecC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEI--------VFGNKGKLIHVDVS 763 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~--------lfgs~~~fv~id~s 763 (1093)
..++|++.++..+...+.+... .+.++|++|++||||+.+|++|+.. ......+|+.+||+
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~-----------s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCa 287 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR-----------SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCG 287 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecc
Confidence 3589999999998888877633 3357999999999999999999998 55678899999999
Q ss_pred CccccCCCCccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
...+. ..+ ..+||+..| |.|....+. .+.+....+++||||||+. +++..|..|+++|+++.+...+|...
T Consensus 288 al~e~-----lle-seLFG~~~gaftga~~~~~-~Gl~e~A~gGTLfLdeI~~-Lp~~~Q~kLl~~L~e~~~~r~G~~~~ 359 (538)
T PRK15424 288 AIAES-----LLE-AELFGYEEGAFTGSRRGGR-AGLFEIAHGGTLFLDEIGE-MPLPLQTRLLRVLEEKEVTRVGGHQP 359 (538)
T ss_pred cCChh-----hHH-HHhcCCccccccCcccccc-CCchhccCCCEEEEcChHh-CCHHHHHHHHhhhhcCeEEecCCCce
Confidence 75321 111 357787665 333211001 1233345678999999999 99999999999999999987665443
Q ss_pred ecCCcEEEEecCC
Q 001355 843 SISGMIFVATSTI 855 (1093)
Q Consensus 843 ~l~naI~IlTSN~ 855 (1093)
--.++++|++||.
T Consensus 360 ~~~dvRiIaat~~ 372 (538)
T PRK15424 360 VPVDVRVISATHC 372 (538)
T ss_pred eccceEEEEecCC
Confidence 3346779999884
No 29
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.59 E-value=1.4e-14 Score=174.75 Aligned_cols=223 Identities=13% Similarity=0.119 Sum_probs=160.3
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPN 772 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~ 772 (1093)
.++|++.++..+.+.+.+... .+.++|++|++||||+.+|++|+........+|+.+||+.+.+..
T Consensus 188 ~iig~s~~~~~~~~~i~~~a~-----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~--- 253 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVVAA-----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL--- 253 (509)
T ss_pred ceeecCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH---
Confidence 599999999999998887643 235799999999999999999999988788899999999854211
Q ss_pred ccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEE
Q 001355 773 SIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVA 851 (1093)
Q Consensus 773 si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~Il 851 (1093)
. ...+||+..| |.|... + -.+.+....+++|||||||. +++.+|..|+++|++|.+...++....-.++.||+
T Consensus 254 --~-e~~lfG~~~g~~~ga~~-~-~~g~~~~a~gGtL~ldeI~~-L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~ 327 (509)
T PRK05022 254 --A-ESELFGHVKGAFTGAIS-N-RSGKFELADGGTLFLDEIGE-LPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIA 327 (509)
T ss_pred --H-HHHhcCccccccCCCcc-c-CCcchhhcCCCEEEecChhh-CCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEE
Confidence 0 0346665544 222211 0 01123344578999999999 99999999999999999876554333334678999
Q ss_pred ecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCcc
Q 001355 852 TSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPIN 931 (1093)
Q Consensus 852 TSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~ 931 (1093)
+|+.. . + ..
T Consensus 328 ~t~~~---l------------~-~~------------------------------------------------------- 336 (509)
T PRK05022 328 ATNRD---L------------R-EE------------------------------------------------------- 336 (509)
T ss_pred ecCCC---H------------H-HH-------------------------------------------------------
Confidence 98841 0 0 00
Q ss_pred chhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHHH
Q 001355 932 SQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPKF 1008 (1093)
Q Consensus 932 ~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~~ 1008 (1093)
-....|.++|++|+. ..|..+||.. +||..++...+.+..
T Consensus 337 -------------------------------------~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~ 379 (509)
T PRK05022 337 -------------------------------------VRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNR 379 (509)
T ss_pred -------------------------------------HHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHH
Confidence 002268899999998 5599999988 678888877777755
Q ss_pred HHhcCCCceeecCHHHHHHHHhcCCchh---hHHHHHHHH
Q 001355 1009 QRAFGFEVLLEIDYEILVQILAATWLSD---RKKAIENWI 1045 (1093)
Q Consensus 1009 ~~~~~~~~~L~Id~~vle~Ll~~~~~~~---~~r~ie~wv 1045 (1093)
.++ +. ..+.|++++++.|..+.|-.+ +++.|++.+
T Consensus 380 ~~~-~~-~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~ 417 (509)
T PRK05022 380 ARL-GL-RSLRLSPAAQAALLAYDWPGNVRELEHVISRAA 417 (509)
T ss_pred HHc-CC-CCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 443 21 236899999999999999543 555555444
No 30
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.57 E-value=3.7e-15 Score=154.54 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=101.7
Q ss_pred cCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCc
Q 001355 694 VGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNS 773 (1093)
Q Consensus 694 ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~s 773 (1093)
++|.+.++..+.+.+.+... .+.++|++|++||||+.+|++||+...+...+|+.+||+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~a~-----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~---- 65 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEEL---- 65 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHH----
T ss_pred CEeCCHHHHHHHHHHHHHhC-----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcch----
Confidence 57889888888877776632 235799999999999999999999888889999999999854211
Q ss_pred cccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEe
Q 001355 774 IFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVAT 852 (1093)
Q Consensus 774 i~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlT 852 (1093)
+ ...+||+..+ |.|.... -.+.+....+++||||||+. +++.+|..|+++|++|.++..++......+++||+|
T Consensus 66 ~--e~~LFG~~~~~~~~~~~~--~~G~l~~A~~GtL~Ld~I~~-L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 66 L--ESELFGHEKGAFTGARSD--KKGLLEQANGGTLFLDEIED-LPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp H--HHHHHEBCSSSSTTTSSE--BEHHHHHTTTSEEEEETGGG-S-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred h--hhhhhccccccccccccc--cCCceeeccceEEeecchhh-hHHHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 0 0356777554 2221110 11455667789999999999 999999999999999999876653333347889999
Q ss_pred cCC
Q 001355 853 STI 855 (1093)
Q Consensus 853 SN~ 855 (1093)
|+.
T Consensus 141 t~~ 143 (168)
T PF00158_consen 141 TSK 143 (168)
T ss_dssp ESS
T ss_pred cCc
Confidence 984
No 31
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.56 E-value=1.6e-14 Score=166.19 Aligned_cols=147 Identities=12% Similarity=0.181 Sum_probs=111.7
Q ss_pred HHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhcc-CCCceEEeecCCccc
Q 001355 689 ALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFG-NKGKLIHVDVSSEQR 767 (1093)
Q Consensus 689 ~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfg-s~~~fv~id~s~~~~ 767 (1093)
.....++|.+.....+.+.|... ++.+.++|++|++|+||+.+|+.||...-. ...+||.+||+.|.+
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 33566899998777777776652 123467999999999999999999966655 488999999999765
Q ss_pred cCCCCccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCC
Q 001355 768 VSQPNSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISG 846 (1093)
Q Consensus 768 ~~~~~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~n 846 (1093)
.... ..+||+.+| |.|... + =.+.+....++++|||||.. +.+..|..|+++||+|.++.-++..+...+
T Consensus 144 n~~~------~eLFG~~kGaftGa~~-~-k~Glfe~A~GGtLfLDEI~~-LP~~~Q~kLl~~le~g~~~rvG~~~~~~~d 214 (403)
T COG1221 144 NLQE------AELFGHEKGAFTGAQG-G-KAGLFEQANGGTLFLDEIHR-LPPEGQEKLLRVLEEGEYRRVGGSQPRPVD 214 (403)
T ss_pred CHHH------HHHhccccceeecccC-C-cCchheecCCCEEehhhhhh-CCHhHHHHHHHHHHcCceEecCCCCCcCCC
Confidence 3221 247788776 555221 1 12344556678999999999 999999999999999999987765566667
Q ss_pred cEEEEecCC
Q 001355 847 MIFVATSTI 855 (1093)
Q Consensus 847 aI~IlTSN~ 855 (1093)
+.+|++|+.
T Consensus 215 VRli~AT~~ 223 (403)
T COG1221 215 VRLICATTE 223 (403)
T ss_pred ceeeecccc
Confidence 889998884
No 32
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.56 E-value=1.9e-14 Score=178.40 Aligned_cols=212 Identities=16% Similarity=0.191 Sum_probs=151.9
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..++|++.++..+...+.+... .+.++||+|++||||+.+|++||........+|+.+||+......
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~-----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~-- 391 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK-----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA-- 391 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC-----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH--
Confidence 4688999888877777666532 235799999999999999999999988888999999999753210
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEE
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVA 851 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~Il 851 (1093)
+ ...+||+..+...... .+.+....+++||||||+. ++...|..|+++|++|.++..++....--+++||+
T Consensus 392 --~--~~elfg~~~~~~~~~~----~g~~~~a~~GtL~ldei~~-l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~ 462 (638)
T PRK11388 392 --L--AEEFLGSDRTDSENGR----LSKFELAHGGTLFLEKVEY-LSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIA 462 (638)
T ss_pred --H--HHHhcCCCCcCccCCC----CCceeECCCCEEEEcChhh-CCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEE
Confidence 0 0245555422111011 1123344578999999999 99999999999999999886554322223567999
Q ss_pred ecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCcc
Q 001355 852 TSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPIN 931 (1093)
Q Consensus 852 TSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~ 931 (1093)
||+.. . +.+
T Consensus 463 ~t~~~---l-------------~~~------------------------------------------------------- 471 (638)
T PRK11388 463 TTTAD---L-------------AML------------------------------------------------------- 471 (638)
T ss_pred eccCC---H-------------HHH-------------------------------------------------------
Confidence 98841 0 000
Q ss_pred chhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHHH
Q 001355 932 SQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPKF 1008 (1093)
Q Consensus 932 ~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~~ 1008 (1093)
+ ....|.++|++|+. ..|..+||.. +|+..++...+....
T Consensus 472 ------------------~-------------------~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~ 514 (638)
T PRK11388 472 ------------------V-------------------EQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLE 514 (638)
T ss_pred ------------------H-------------------hcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHH
Confidence 0 01368899999998 6689999988 688888888887765
Q ss_pred HHhcCCCceeecCHHHHHHHHhcCCchh
Q 001355 1009 QRAFGFEVLLEIDYEILVQILAATWLSD 1036 (1093)
Q Consensus 1009 ~~~~~~~~~L~Id~~vle~Ll~~~~~~~ 1036 (1093)
++. +..+.|++++++.|..+.|-.+
T Consensus 515 ~~~---~~~~~~s~~a~~~L~~y~WPGN 539 (638)
T PRK11388 515 KRF---STRLKIDDDALARLVSYRWPGN 539 (638)
T ss_pred HHh---CCCCCcCHHHHHHHHcCCCCCh
Confidence 443 2236799999999999999544
No 33
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.55 E-value=3.1e-14 Score=172.11 Aligned_cols=224 Identities=12% Similarity=0.076 Sum_probs=156.4
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.++|.+.++..+...+.+... .+.+++++|++||||+.+|++||........+|+.+||+......
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~-----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~-- 270 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM-----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDV-- 270 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHH--
Confidence 4689999888777777665532 234799999999999999999999888888899999999853210
Q ss_pred CccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEE
Q 001355 772 NSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFV 850 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~I 850 (1093)
. ...+||+..| |.|... .-.+.+....+++||||||+. +++..|..|+++|++|.++..++......+++||
T Consensus 271 ---~-e~elFG~~~~~~~~~~~--~~~g~~e~a~~GtL~LdeI~~-L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI 343 (520)
T PRK10820 271 ---V-ESELFGHAPGAYPNALE--GKKGFFEQANGGSVLLDEIGE-MSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 343 (520)
T ss_pred ---H-HHHhcCCCCCCcCCccc--CCCChhhhcCCCEEEEeChhh-CCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEE
Confidence 0 0245665543 211110 001223344578999999999 9999999999999999987755433223467799
Q ss_pred EecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCc
Q 001355 851 ATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPI 930 (1093)
Q Consensus 851 lTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~ 930 (1093)
+||+.. . + .+
T Consensus 344 ~st~~~---l------------~-~l------------------------------------------------------ 353 (520)
T PRK10820 344 CATQKN---L------------V-EL------------------------------------------------------ 353 (520)
T ss_pred EecCCC---H------------H-HH------------------------------------------------------
Confidence 988741 0 0 00
Q ss_pred cchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHH
Q 001355 931 NSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPK 1007 (1093)
Q Consensus 931 ~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~ 1007 (1093)
+ ....|.++|++|+. ..|..+||.. +|+..++...+...
T Consensus 354 -------------------~-------------------~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~ 395 (520)
T PRK10820 354 -------------------V-------------------QKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARF 395 (520)
T ss_pred -------------------H-------------------HcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHH
Confidence 0 01267889999987 7799999988 57888887777775
Q ss_pred HHHhcCCCceeecCHHHHHHHHhcCCchh---hHHHHHHHH
Q 001355 1008 FQRAFGFEVLLEIDYEILVQILAATWLSD---RKKAIENWI 1045 (1093)
Q Consensus 1008 ~~~~~~~~~~L~Id~~vle~Ll~~~~~~~---~~r~ie~wv 1045 (1093)
..+. +.. ...+++++++.|..+.|-.+ +++.|++.+
T Consensus 396 ~~~~-g~~-~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~ 434 (520)
T PRK10820 396 ADEQ-GVP-RPKLAADLNTVLTRYGWPGNVRQLKNAIYRAL 434 (520)
T ss_pred HHHc-CCC-CCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 5443 211 24799999999999999544 555555444
No 34
>CHL00181 cbbX CbbX; Provisional
Probab=99.55 E-value=1.8e-13 Score=153.71 Aligned_cols=227 Identities=12% Similarity=0.150 Sum_probs=149.3
Q ss_pred CCHHHHHHHHHHHhcccCccHHHHHHHHHHHHH-----HH--hcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 678 FDPRDYKTLRIALAEKVGWQDEAICTISQAVSR-----WR--IGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 678 ~d~e~lk~L~~~L~e~ViGQdeai~~Ia~aI~~-----~r--sg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+..+++.+.+.|.+.++|+++++..|.+.+.. .+ .|+..+ +.+..++|+||||||||++|+++|+.+
T Consensus 9 ~~~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~-----~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 9 YEKTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSS-----NPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred ccccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 455578899999999999999988877665432 11 232221 234579999999999999999999987
Q ss_pred ccC----CCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc---------
Q 001355 751 FGN----KGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA--------- 817 (1093)
Q Consensus 751 fgs----~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia--------- 817 (1093)
+.. ..+|+.++..... ..| .|.+. ....+.+.+..++||||||++. +
T Consensus 84 ~~~g~~~~~~~~~v~~~~l~-----------~~~-------~g~~~-~~~~~~l~~a~ggVLfIDE~~~-l~~~~~~~~~ 143 (287)
T CHL00181 84 YKLGYIKKGHLLTVTRDDLV-----------GQY-------IGHTA-PKTKEVLKKAMGGVLFIDEAYY-LYKPDNERDY 143 (287)
T ss_pred HHcCCCCCCceEEecHHHHH-----------HHH-------hccch-HHHHHHHHHccCCEEEEEccch-hccCCCccch
Confidence 542 2346666644211 112 22221 2234555556678999999998 5
Q ss_pred CHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhccccccccccc
Q 001355 818 DPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAAR 897 (1093)
Q Consensus 818 d~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~ 897 (1093)
..++++.|++.|++++ .+.+||++++. +++.
T Consensus 144 ~~e~~~~L~~~me~~~-----------~~~~vI~ag~~------------------~~~~-------------------- 174 (287)
T CHL00181 144 GSEAIEILLQVMENQR-----------DDLVVIFAGYK------------------DRMD-------------------- 174 (287)
T ss_pred HHHHHHHHHHHHhcCC-----------CCEEEEEeCCc------------------HHHH--------------------
Confidence 5689999999998642 35677787552 0000
Q ss_pred CCCCcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHH
Q 001355 898 GSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLED 977 (1093)
Q Consensus 898 ~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~e 977 (1093)
.++ ...|.
T Consensus 175 --------------------------------------------~~~----------------------------~~np~ 182 (287)
T CHL00181 175 --------------------------------------------KFY----------------------------ESNPG 182 (287)
T ss_pred --------------------------------------------HHH----------------------------hcCHH
Confidence 001 12378
Q ss_pred HhhccccccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHh----cCCchh-h-HHHHHHHHHHHHHH
Q 001355 978 FFDQTDAIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILA----ATWLSD-R-KKAIENWIENVVLR 1051 (1093)
Q Consensus 978 fl~rId~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~----~~~~~~-~-~r~ie~wve~vl~~ 1051 (1093)
|..|++.+|.|+|++.+++.+++...+.+.. ..+++++.+.++. ..+... + .|.+++++++....
T Consensus 183 L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~---------~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 183 LSSRIANHVDFPDYTPEELLQIAKIMLEEQQ---------YQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred HHHhCCceEEcCCcCHHHHHHHHHHHHHHhc---------CCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887631 2344554444443 222211 3 57888888888777
Q ss_pred HHHHHHhh
Q 001355 1052 SFYEVRRK 1059 (1093)
Q Consensus 1052 ~l~e~~~~ 1059 (1093)
.-.++-..
T Consensus 254 ~~~r~~~~ 261 (287)
T CHL00181 254 QANRIFES 261 (287)
T ss_pred HHHHHHcC
Confidence 76665444
No 35
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.53 E-value=4.8e-14 Score=153.78 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=112.2
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC--CCceEE
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN--KGKLIH 759 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs--~~~fv~ 759 (1093)
++..|++.|...++||.-+++.|..+|........ .+.++.+-|+|++||||.++++.||+.+|.. ..+||.
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~ 145 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVH 145 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHH
Confidence 57889999999999999999999999987765222 2345789999999999999999999999854 334433
Q ss_pred eecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCC
Q 001355 760 VDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYG 839 (1093)
Q Consensus 760 id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G 839 (1093)
.-.+..+ +.. +.++ ..|+ .....++.+.++..+.++++|||+|| +++.+.+.|...++.--..
T Consensus 146 ~fvat~h-FP~-------~~~i---e~Yk-~eL~~~v~~~v~~C~rslFIFDE~DK-mp~gLld~lkpfLdyyp~v---- 208 (344)
T KOG2170|consen 146 HFVATLH-FPH-------ASKI---EDYK-EELKNRVRGTVQACQRSLFIFDEVDK-LPPGLLDVLKPFLDYYPQV---- 208 (344)
T ss_pred Hhhhhcc-CCC-------hHHH---HHHH-HHHHHHHHHHHHhcCCceEEechhhh-cCHhHHHHHhhhhcccccc----
Confidence 2222211 000 0000 1111 12235677778889999999999999 9999999999999853322
Q ss_pred eEeecCCcEEEEecCCC
Q 001355 840 RDVSISGMIFVATSTIL 856 (1093)
Q Consensus 840 ~~V~l~naI~IlTSN~~ 856 (1093)
..+++.++|||+-||.|
T Consensus 209 ~gv~frkaIFIfLSN~g 225 (344)
T KOG2170|consen 209 SGVDFRKAIFIFLSNAG 225 (344)
T ss_pred ccccccceEEEEEcCCc
Confidence 34789999999999975
No 36
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.52 E-value=1.5e-13 Score=171.66 Aligned_cols=223 Identities=14% Similarity=0.159 Sum_probs=157.8
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPN 772 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~ 772 (1093)
.++|++.++..+...+..... .+.++|++|++||||+.+|++|+........+|+.+||.......
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~-----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~--- 442 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQ-----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL--- 442 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH---
Confidence 689999998888887776532 234799999999999999999999888788899999999753210
Q ss_pred ccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEE
Q 001355 773 SIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVA 851 (1093)
Q Consensus 773 si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~Il 851 (1093)
. ...+||...| |.|... .. .+.+....+++||||||+. ++..+|..|+++|++|.+...++......++.+|+
T Consensus 443 --~-~~~lfg~~~~~~~g~~~-~~-~g~le~a~~GtL~Ldei~~-L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~ 516 (686)
T PRK15429 443 --L-ESDLFGHERGAFTGASA-QR-IGRFELADKSSLFLDEVGD-MPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIA 516 (686)
T ss_pred --h-hhhhcCccccccccccc-ch-hhHHHhcCCCeEEEechhh-CCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEE
Confidence 0 0245565443 222110 11 1223445578999999999 99999999999999999887655443345778999
Q ss_pred ecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCcc
Q 001355 852 TSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPIN 931 (1093)
Q Consensus 852 TSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~ 931 (1093)
||+.. . +.+
T Consensus 517 ~t~~~---l-------------~~~------------------------------------------------------- 525 (686)
T PRK15429 517 ATNRD---L-------------KKM------------------------------------------------------- 525 (686)
T ss_pred eCCCC---H-------------HHH-------------------------------------------------------
Confidence 98841 0 000
Q ss_pred chhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHHH
Q 001355 932 SQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPKF 1008 (1093)
Q Consensus 932 ~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~~ 1008 (1093)
-....|..+|++++. ..|..+||.. +||..++...+.+..
T Consensus 526 -------------------------------------~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~ 568 (686)
T PRK15429 526 -------------------------------------VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIA 568 (686)
T ss_pred -------------------------------------HHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHH
Confidence 002267889999998 5699999987 778888877777654
Q ss_pred HHhcCCCceeecCHHHHHHHHhcCCchh---hHHHHHHHH
Q 001355 1009 QRAFGFEVLLEIDYEILVQILAATWLSD---RKKAIENWI 1045 (1093)
Q Consensus 1009 ~~~~~~~~~L~Id~~vle~Ll~~~~~~~---~~r~ie~wv 1045 (1093)
.+. +..+ ..|++++++.|..+.|-.+ +++.|++.+
T Consensus 569 ~~~-~~~~-~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~ 606 (686)
T PRK15429 569 RRM-GRNI-DSIPAETLRTLSNMEWPGNVRELENVIERAV 606 (686)
T ss_pred HHc-CCCC-CCcCHHHHHHHHhCCCCCcHHHHHHHHHHHH
Confidence 442 2222 3699999999999999543 555555444
No 37
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.49 E-value=3.2e-13 Score=161.41 Aligned_cols=223 Identities=15% Similarity=0.167 Sum_probs=155.0
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPN 772 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~ 772 (1093)
.++|...++..+...+.... +.+.++++.|++|+||+.+|++||........+|+.+||+......-
T Consensus 139 ~lig~s~~~~~l~~~~~~~~-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~-- 205 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS-----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI-- 205 (469)
T ss_pred cceecCHHHHHHHHHHHHHh-----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH--
Confidence 36777767766666665432 23357999999999999999999999888889999999997532110
Q ss_pred ccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEE
Q 001355 773 SIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVA 851 (1093)
Q Consensus 773 si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~Il 851 (1093)
...+||+..| |.|.... -.+.+....++++|||||+. ++...|..|+++|++|.+...+|......++.||+
T Consensus 206 ----~~~lfg~~~g~~~~~~~~--~~g~~~~a~~Gtl~l~~i~~-l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~ 278 (469)
T PRK10923 206 ----ESELFGHEKGAFTGANTI--RQGRFEQADGGTLFLDEIGD-MPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIA 278 (469)
T ss_pred ----HHHhcCCCCCCCCCCCcC--CCCCeeECCCCEEEEecccc-CCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEE
Confidence 0245565544 2221110 01123344567999999999 99999999999999999987665443334778999
Q ss_pred ecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCcc
Q 001355 852 TSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPIN 931 (1093)
Q Consensus 852 TSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~ 931 (1093)
||+.. -++ .
T Consensus 279 ~~~~~---------------l~~-~------------------------------------------------------- 287 (469)
T PRK10923 279 ATHQN---------------LEQ-R------------------------------------------------------- 287 (469)
T ss_pred eCCCC---------------HHH-H-------------------------------------------------------
Confidence 98841 000 0
Q ss_pred chhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHHH
Q 001355 932 SQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPKF 1008 (1093)
Q Consensus 932 ~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~~ 1008 (1093)
-....|.++|++++. ..|..+||.. +|+..++...+....
T Consensus 288 -------------------------------------~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~ 330 (469)
T PRK10923 288 -------------------------------------VQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAA 330 (469)
T ss_pred -------------------------------------HHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHH
Confidence 002268899999996 7788999987 788888888887754
Q ss_pred HHhcCCCceeecCHHHHHHHHhcCCch---hhHHHHHHHH
Q 001355 1009 QRAFGFEVLLEIDYEILVQILAATWLS---DRKKAIENWI 1045 (1093)
Q Consensus 1009 ~~~~~~~~~L~Id~~vle~Ll~~~~~~---~~~r~ie~wv 1045 (1093)
.+. +.. ...+++++++.|..+.|-. ++++.|++.+
T Consensus 331 ~~~-~~~-~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~ 368 (469)
T PRK10923 331 REL-GVE-AKLLHPETEAALTRLAWPGNVRQLENTCRWLT 368 (469)
T ss_pred HHc-CCC-CCCcCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 432 222 2469999999999999953 3555555544
No 38
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.49 E-value=3.4e-13 Score=149.22 Aligned_cols=211 Identities=14% Similarity=0.126 Sum_probs=154.6
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQ 770 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~ 770 (1093)
++.+++++..+..+.....+.. .-|.++|+.|++||||..+|++-|....+...+|+.+||+...+...
T Consensus 203 F~~~v~~S~~mk~~v~qA~k~A-----------mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~a 271 (511)
T COG3283 203 FEQIVAVSPKMKHVVEQAQKLA-----------MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAA 271 (511)
T ss_pred hHHHhhccHHHHHHHHHHHHhh-----------ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHh
Confidence 3567888877666555444332 23457999999999999999999999889999999999998543221
Q ss_pred CCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEE
Q 001355 771 PNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFV 850 (1093)
Q Consensus 771 ~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~I 850 (1093)
.+.+||+.+|-.|+ .+ .+....++.||||||.. +++..|..|++.+.+|.|+..++..--.-|++||
T Consensus 272 ------EsElFG~apg~~gk--~G----ffE~AngGTVlLDeIgE-mSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVI 338 (511)
T COG3283 272 ------ESELFGHAPGDEGK--KG----FFEQANGGTVLLDEIGE-MSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 338 (511)
T ss_pred ------HHHHhcCCCCCCCc--cc----hhhhccCCeEEeehhhh-cCHHHHHHHHHHhcCCceeecCCcceEEEEEEEE
Confidence 25788887763332 12 23345678999999999 9999999999999999999876533333478899
Q ss_pred EecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCc
Q 001355 851 ATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPI 930 (1093)
Q Consensus 851 lTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~ 930 (1093)
+||..- . .+
T Consensus 339 catq~n---L-----------~~--------------------------------------------------------- 347 (511)
T COG3283 339 CATQVN---L-----------VE--------------------------------------------------------- 347 (511)
T ss_pred eccccc---H-----------HH---------------------------------------------------------
Confidence 988641 0 00
Q ss_pred cchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHH
Q 001355 931 NSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPK 1007 (1093)
Q Consensus 931 ~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~ 1007 (1093)
-++ +..|+.|+++|+. -++..+||.+ .+|.-.....+...
T Consensus 348 ------------------lv~-------------------~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~ 390 (511)
T COG3283 348 ------------------LVQ-------------------KGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQF 390 (511)
T ss_pred ------------------HHh-------------------cCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHH
Confidence 011 1268899999999 6789999977 66766666666666
Q ss_pred HHHhcCCCce-eecCHHHHHHHHhcCCchh
Q 001355 1008 FQRAFGFEVL-LEIDYEILVQILAATWLSD 1036 (1093)
Q Consensus 1008 ~~~~~~~~~~-L~Id~~vle~Ll~~~~~~~ 1036 (1093)
.+++ ++. -.++++.+.+|..+.|..+
T Consensus 391 s~el---g~p~pkl~~~~~~~L~~y~WpGN 417 (511)
T COG3283 391 SDEL---GVPRPKLAADLLTVLTRYAWPGN 417 (511)
T ss_pred HHHh---CCCCCccCHHHHHHHHHcCCCcc
Confidence 6665 232 4688999999999999644
No 39
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.47 E-value=9.8e-13 Score=147.61 Aligned_cols=219 Identities=13% Similarity=0.101 Sum_probs=147.0
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHH-----HH--hcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC-
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSR-----WR--IGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN- 753 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~-----~r--sg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs- 753 (1093)
.++.+.+.|...++|.++++..|.+.+.. .+ .|+... .+...++|+||+|||||++|+++|+.++..
T Consensus 12 ~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~-----~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 12 GITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASA-----APTLHMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred cHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-----CCCceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 56788889998999999998887665432 11 232211 123579999999999999999999887542
Q ss_pred ---CCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc---------CHHH
Q 001355 754 ---KGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA---------DPIV 821 (1093)
Q Consensus 754 ---~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia---------d~~v 821 (1093)
..+|+.+++...- ..++|. +. ..+.+.+.+..++||||||++. + ..++
T Consensus 87 ~~~~~~~v~v~~~~l~-----------~~~~g~-------~~-~~~~~~~~~a~~gvL~iDEi~~-L~~~~~~~~~~~~~ 146 (284)
T TIGR02880 87 YVRKGHLVSVTRDDLV-----------GQYIGH-------TA-PKTKEILKRAMGGVLFIDEAYY-LYRPDNERDYGQEA 146 (284)
T ss_pred CcccceEEEecHHHHh-----------Hhhccc-------ch-HHHHHHHHHccCcEEEEechhh-hccCCCccchHHHH
Confidence 2357777754310 122332 21 2334455555668999999997 5 4678
Q ss_pred HHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCC
Q 001355 822 QSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGM 901 (1093)
Q Consensus 822 q~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~ 901 (1093)
++.|++.|++++ .+.++|++++.- ++
T Consensus 147 ~~~Ll~~le~~~-----------~~~~vI~a~~~~------------------~~------------------------- 172 (284)
T TIGR02880 147 IEILLQVMENQR-----------DDLVVILAGYKD------------------RM------------------------- 172 (284)
T ss_pred HHHHHHHHhcCC-----------CCEEEEEeCCcH------------------HH-------------------------
Confidence 999999998653 356778876520 00
Q ss_pred cccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhc
Q 001355 902 NVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQ 981 (1093)
Q Consensus 902 ~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~r 981 (1093)
..++ ...|.|..|
T Consensus 173 ---------------------------------------~~~~----------------------------~~np~L~sR 185 (284)
T TIGR02880 173 ---------------------------------------DSFF----------------------------ESNPGFSSR 185 (284)
T ss_pred ---------------------------------------HHHH----------------------------hhCHHHHhh
Confidence 0000 124789999
Q ss_pred cccccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhc-------CCchhhHHHHHHHHHHHHHHHHH
Q 001355 982 TDAIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAA-------TWLSDRKKAIENWIENVVLRSFY 1054 (1093)
Q Consensus 982 Id~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~-------~~~~~~~r~ie~wve~vl~~~l~ 1054 (1093)
++..|.|+||+.+++.+++...+.+.. ..+++++++.+..+ .|..+ .|.++++++......-.
T Consensus 186 ~~~~i~fp~l~~edl~~I~~~~l~~~~---------~~l~~~a~~~L~~~l~~~~~~~~~GN-~R~lrn~ve~~~~~~~~ 255 (284)
T TIGR02880 186 VAHHVDFPDYSEAELLVIAGLMLKEQQ---------YRFSAEAEEAFADYIALRRTQPHFAN-ARSIRNAIDRARLRQAN 255 (284)
T ss_pred CCcEEEeCCcCHHHHHHHHHHHHHHhc---------cccCHHHHHHHHHHHHHhCCCCCCCh-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999988877631 35778888877765 67543 35666666666555444
Q ss_pred HH
Q 001355 1055 EV 1056 (1093)
Q Consensus 1055 e~ 1056 (1093)
++
T Consensus 256 r~ 257 (284)
T TIGR02880 256 RL 257 (284)
T ss_pred HH
Confidence 44
No 40
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.41 E-value=1.5e-12 Score=154.69 Aligned_cols=223 Identities=12% Similarity=0.139 Sum_probs=153.9
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPN 772 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~ 772 (1093)
.++|....+..+...+..... .+.++++.|++|+||+.+|++|+........+|+.+||+.....
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~---- 204 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAP-----------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN---- 204 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH----
Confidence 478888777777776654321 22468999999999999999999988777889999999975321
Q ss_pred ccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEE
Q 001355 773 SIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVA 851 (1093)
Q Consensus 773 si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~Il 851 (1093)
.+ + ..+||...| |.|.. ....+.+....+++||||||+. +++.+|..|+++|++|.+...+|....-.++.||+
T Consensus 205 ~~-~-~~lfg~~~~~~~~~~--~~~~g~~~~a~~gtl~l~~i~~-l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~ 279 (445)
T TIGR02915 205 LL-E-SELFGYEKGAFTGAV--KQTLGKIEYAHGGTLFLDEIGD-LPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVC 279 (445)
T ss_pred HH-H-HHhcCCCCCCcCCCc--cCCCCceeECCCCEEEEechhh-CCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEE
Confidence 00 0 245665444 22211 0112233445678999999999 99999999999999999876555333334678999
Q ss_pred ecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCcc
Q 001355 852 TSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPIN 931 (1093)
Q Consensus 852 TSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~ 931 (1093)
||+.. . ++ .
T Consensus 280 ~~~~~---l------------~~-~------------------------------------------------------- 288 (445)
T TIGR02915 280 ATNQD---L------------KR-M------------------------------------------------------- 288 (445)
T ss_pred ecCCC---H------------HH-H-------------------------------------------------------
Confidence 98841 0 00 0
Q ss_pred chhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHHH
Q 001355 932 SQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPKF 1008 (1093)
Q Consensus 932 ~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~~ 1008 (1093)
.....|.++|++++. ..|..+||.. +|+..++...+....
T Consensus 289 -------------------------------------~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~ 331 (445)
T TIGR02915 289 -------------------------------------IAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFA 331 (445)
T ss_pred -------------------------------------HHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHH
Confidence 002267889999988 6789999987 678888777777654
Q ss_pred HHhcCCCceeecCHHHHHHHHhcCCchh---hHHHHHHHH
Q 001355 1009 QRAFGFEVLLEIDYEILVQILAATWLSD---RKKAIENWI 1045 (1093)
Q Consensus 1009 ~~~~~~~~~L~Id~~vle~Ll~~~~~~~---~~r~ie~wv 1045 (1093)
.+. +.. ...+++++++.|..+.|-.+ +++.|++.+
T Consensus 332 ~~~-~~~-~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~ 369 (445)
T TIGR02915 332 REL-KRK-TKGFTDDALRALEAHAWPGNVRELENKVKRAV 369 (445)
T ss_pred HHh-CCC-CCCCCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 432 211 25799999999999999543 445544443
No 41
>PRK15115 response regulator GlrR; Provisional
Probab=99.39 E-value=4.3e-12 Score=150.71 Aligned_cols=201 Identities=11% Similarity=0.137 Sum_probs=138.2
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccc-cccchhhhHHHHHHHhCC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKP 804 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p 804 (1093)
+.++++.|++|+||+.+|+.|+........+|+.+||....... .+ ..+||...| |.|... .-.+.+....
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~-----~~-~~lfg~~~~~~~~~~~--~~~g~~~~a~ 228 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL-----LE-SELFGHARGAFTGAVS--NREGLFQAAE 228 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH-----HH-HHhcCCCcCCCCCCcc--CCCCcEEECC
Confidence 35799999999999999999999887778899999999753211 00 234554433 111110 0112233445
Q ss_pred ceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhh
Q 001355 805 YSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQM 884 (1093)
Q Consensus 805 ~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l 884 (1093)
+++|||||||. +++..|..|+++|++|.+...++....-.++++|+||+.. -++ .
T Consensus 229 ~gtl~l~~i~~-l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~---------------l~~-~-------- 283 (444)
T PRK15115 229 GGTLFLDEIGD-MPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD---------------LPK-A-------- 283 (444)
T ss_pred CCEEEEEcccc-CCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC---------------HHH-H--------
Confidence 67999999999 9999999999999999987554433333467899988741 000 0
Q ss_pred hhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCc
Q 001355 885 QTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDS 964 (1093)
Q Consensus 885 ~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~ 964 (1093)
T Consensus 284 -------------------------------------------------------------------------------- 283 (444)
T PRK15115 284 -------------------------------------------------------------------------------- 283 (444)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchh---hH
Q 001355 965 DTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSD---RK 1038 (1093)
Q Consensus 965 d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~---~~ 1038 (1093)
-....|.++|++++. ..|..+||.. +|+..++...+.....+. + .....|++++++.|..+.|-.+ ++
T Consensus 284 ----~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~-~-~~~~~~~~~a~~~L~~~~WpgNvreL~ 357 (444)
T PRK15115 284 ----MARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERH-K-PFVRAFSTDAMKRLMTASWPGNVRQLV 357 (444)
T ss_pred ----HHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHh-C-CCCCCcCHHHHHHHHhCCCCChHHHHH
Confidence 001267889999998 6788999987 678888877777654432 1 1124699999999999999544 44
Q ss_pred HHHHHHH
Q 001355 1039 KAIENWI 1045 (1093)
Q Consensus 1039 r~ie~wv 1045 (1093)
+.|++.+
T Consensus 358 ~~i~~~~ 364 (444)
T PRK15115 358 NVIEQCV 364 (444)
T ss_pred HHHHHHH
Confidence 5544443
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.39 E-value=1.8e-11 Score=135.70 Aligned_cols=212 Identities=15% Similarity=0.146 Sum_probs=136.4
Q ss_pred ccCccHHHHHHHHHHHHHHH-------hcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhcc----CCCceEEee
Q 001355 693 KVGWQDEAICTISQAVSRWR-------IGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFG----NKGKLIHVD 761 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~r-------sg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfg----s~~~fv~id 761 (1093)
.++|+++++..|...+.... .|+... +....++|+||+|||||++|+.+|+.++. ....++.++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~-----~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~ 81 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTS-----KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVE 81 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEec
Confidence 38999998877765544321 222222 23357999999999999999999998753 223455555
Q ss_pred cCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccC--------HHHHHHHhhhhcCCe
Q 001355 762 VSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAAD--------PIVQSSLTKAISTGK 833 (1093)
Q Consensus 762 ~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad--------~~vq~~Ll~aLe~Gr 833 (1093)
++... ..++ |.. ...+.+.+....++|||||||+. +. .+.++.|++.+++++
T Consensus 82 ~~~l~-----------~~~~-------g~~-~~~~~~~~~~a~~~VL~IDE~~~-L~~~~~~~~~~~~i~~Ll~~~e~~~ 141 (261)
T TIGR02881 82 RADLV-----------GEYI-------GHT-AQKTREVIKKALGGVLFIDEAYS-LARGGEKDFGKEAIDTLVKGMEDNR 141 (261)
T ss_pred HHHhh-----------hhhc-------cch-HHHHHHHHHhccCCEEEEechhh-hccCCccchHHHHHHHHHHHHhccC
Confidence 54311 1122 211 12344556666678999999998 54 467888999998642
Q ss_pred EecCCCeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCC
Q 001355 834 FTDSYGRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSN 913 (1093)
Q Consensus 834 ~~d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~ 913 (1093)
.+.++|+++.. ..+ +
T Consensus 142 -----------~~~~vila~~~----~~~-----------~--------------------------------------- 156 (261)
T TIGR02881 142 -----------NEFVLILAGYS----DEM-----------D--------------------------------------- 156 (261)
T ss_pred -----------CCEEEEecCCc----chh-----------H---------------------------------------
Confidence 24456665431 000 0
Q ss_pred chhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCCh
Q 001355 914 PESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNF 993 (1093)
Q Consensus 914 ~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~ 993 (1093)
. ...+.|.|..|++..|.|++++.
T Consensus 157 ----------------------------~----------------------------~~~~~p~L~sRf~~~i~f~~~~~ 180 (261)
T TIGR02881 157 ----------------------------Y----------------------------FLSLNPGLRSRFPISIDFPDYTV 180 (261)
T ss_pred ----------------------------H----------------------------HHhcChHHHhccceEEEECCCCH
Confidence 0 00234688899998999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhc----CC----chhhHHHHHHHHHHHHHHHHHHHHhh
Q 001355 994 DLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAA----TW----LSDRKKAIENWIENVVLRSFYEVRRK 1059 (1093)
Q Consensus 994 ~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~----~~----~~~~~r~ie~wve~vl~~~l~e~~~~ 1059 (1093)
+++.+++...+.. . .+.+++++++.|... .| ...-.|.++++++.++......+...
T Consensus 181 ~el~~Il~~~~~~-------~--~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 181 EELMEIAERMVKE-------R--EYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred HHHHHHHHHHHHH-------c--CCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999877644 1 256888998888653 22 11135778888888877776555433
No 43
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.38 E-value=4e-12 Score=151.30 Aligned_cols=223 Identities=15% Similarity=0.179 Sum_probs=152.4
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPN 772 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~ 772 (1093)
.++|....+..+...+..... .+.++++.|++|+||+.+|++|+........+|+.+||.......
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~-----------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~--- 209 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIAL-----------SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL--- 209 (457)
T ss_pred ceecccHHHhHHHHHHHHHcC-----------CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH---
Confidence 478888888777776665532 234799999999999999999999887788899999999753210
Q ss_pred ccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEE
Q 001355 773 SIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVA 851 (1093)
Q Consensus 773 si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~Il 851 (1093)
+ ...+||...+ |.|... .-.+.+....+++|||||||. +++..|..|+++|+++.+...++......++.||+
T Consensus 210 -~--~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~ld~i~~-l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~ 283 (457)
T PRK11361 210 -L--ESELFGHEKGAFTGAQT--LRQGLFERANEGTLLLDEIGE-MPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIA 283 (457)
T ss_pred -H--HHHhcCCCCCCCCCCCC--CCCCceEECCCCEEEEechhh-CCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEE
Confidence 0 0245554433 222111 001223445578999999999 99999999999999998876554333334678999
Q ss_pred ecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCcc
Q 001355 852 TSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPIN 931 (1093)
Q Consensus 852 TSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~ 931 (1093)
||+.. . +.+
T Consensus 284 ~t~~~---l-------------~~~------------------------------------------------------- 292 (457)
T PRK11361 284 ATNRD---L-------------QAM------------------------------------------------------- 292 (457)
T ss_pred eCCCC---H-------------HHH-------------------------------------------------------
Confidence 98841 0 000
Q ss_pred chhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHHH
Q 001355 932 SQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPKF 1008 (1093)
Q Consensus 932 ~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~~ 1008 (1093)
+ ....|.++|++++. ..|..+||.. +|+..++...+....
T Consensus 293 ------------------~-------------------~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~ 335 (457)
T PRK11361 293 ------------------V-------------------KEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFS 335 (457)
T ss_pred ------------------H-------------------HcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHH
Confidence 0 01257788999987 6688899986 778777777776654
Q ss_pred HHhcCCCceeecCHHHHHHHHhcCCch---hhHHHHHHHH
Q 001355 1009 QRAFGFEVLLEIDYEILVQILAATWLS---DRKKAIENWI 1045 (1093)
Q Consensus 1009 ~~~~~~~~~L~Id~~vle~Ll~~~~~~---~~~r~ie~wv 1045 (1093)
.+. +. -.+.+++++++.|..+.|-. ++++.|++.+
T Consensus 336 ~~~-~~-~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~ 373 (457)
T PRK11361 336 SEN-QR-DIIDIDPMAMSLLTAWSWPGNIRELSNVIERAV 373 (457)
T ss_pred HHc-CC-CCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 432 11 12579999999999999943 3555555443
No 44
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.36 E-value=5.5e-12 Score=150.50 Aligned_cols=223 Identities=17% Similarity=0.171 Sum_probs=155.7
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPN 772 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~ 772 (1093)
.++|...++..+...+..... .+.++++.|++|+||+.+|++|+....+...+|+.+||+......
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~-----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~--- 200 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSR-----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDL--- 200 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhC-----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHH---
Confidence 367888777777777765321 235799999999999999999999988888999999999753210
Q ss_pred ccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEE
Q 001355 773 SIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVA 851 (1093)
Q Consensus 773 si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~Il 851 (1093)
+ ...+||...| |.|.. ..-.+.+....+++||||||+. ++..+|..|+++|++|.+...+|......++.||+
T Consensus 201 -~--~~~lfg~~~~~~~~~~--~~~~g~~~~a~~gtl~l~ei~~-l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~ 274 (463)
T TIGR01818 201 -I--ESELFGHEKGAFTGAN--TRRQGRFEQADGGTLFLDEIGD-MPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVA 274 (463)
T ss_pred -H--HHHhcCCCCCCCCCcc--cCCCCcEEECCCCeEEEEchhh-CCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEE
Confidence 0 0234555433 22211 0111223344578999999999 99999999999999999887665444444677999
Q ss_pred ecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCcc
Q 001355 852 TSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPIN 931 (1093)
Q Consensus 852 TSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~ 931 (1093)
||+.. -+ .+
T Consensus 275 ~~~~~---------------l~-~~------------------------------------------------------- 283 (463)
T TIGR01818 275 ATHQN---------------LE-AL------------------------------------------------------- 283 (463)
T ss_pred eCCCC---------------HH-HH-------------------------------------------------------
Confidence 88741 00 00
Q ss_pred chhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHHH
Q 001355 932 SQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPKF 1008 (1093)
Q Consensus 932 ~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~~ 1008 (1093)
-....|.++|++|+. ..|..+||.. +|+..++...+....
T Consensus 284 -------------------------------------~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~ 326 (463)
T TIGR01818 284 -------------------------------------VRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAA 326 (463)
T ss_pred -------------------------------------HHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHH
Confidence 001267889999998 5899999984 788888888887754
Q ss_pred HHhcCCCceeecCHHHHHHHHhcCCc---hhhHHHHHHHH
Q 001355 1009 QRAFGFEVLLEIDYEILVQILAATWL---SDRKKAIENWI 1045 (1093)
Q Consensus 1009 ~~~~~~~~~L~Id~~vle~Ll~~~~~---~~~~r~ie~wv 1045 (1093)
.+. +.. ...|++++++.|.++.|- +++++.+++.+
T Consensus 327 ~~~-~~~-~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~ 364 (463)
T TIGR01818 327 REL-DVE-PKLLDPEALERLKQLRWPGNVRQLENLCRWLT 364 (463)
T ss_pred HHh-CCC-CCCcCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 432 111 146999999999999995 44555555544
No 45
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.35 E-value=2.2e-12 Score=153.21 Aligned_cols=188 Identities=17% Similarity=0.241 Sum_probs=135.6
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccc-cccchhhhHHHHHHHhC
Q 001355 725 RGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSK 803 (1093)
Q Consensus 725 ~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~ 803 (1093)
.+.++++.|.+|+||..+||+|++..- ...+||.+||..+.+.. + ...+|||..| |.|....++ .+.+...
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~l----i--esELFGy~~GafTga~~kG~-~g~~~~A 406 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEAL----I--ESELFGYVAGAFTGARRKGY-KGKLEQA 406 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHh----h--hHHHhccCccccccchhccc-cccceec
Confidence 346899999999999999999999886 78899999999854311 1 1467888766 333221111 2345566
Q ss_pred CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhh
Q 001355 804 PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQ 883 (1093)
Q Consensus 804 p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~ 883 (1093)
+.+.+|||||.. +....|..|++.|++|.++.-+|..+ --+..||.+|+.
T Consensus 407 ~gGtlFldeIgd-~p~~~Qs~LLrVl~e~~v~p~g~~~~-~vdirvi~ath~---------------------------- 456 (606)
T COG3284 407 DGGTLFLDEIGD-MPLALQSRLLRVLQEGVVTPLGGTRI-KVDIRVIAATHR---------------------------- 456 (606)
T ss_pred CCCccHHHHhhh-chHHHHHHHHHHHhhCceeccCCcce-eEEEEEEeccCc----------------------------
Confidence 788999999999 99999999999999999998777442 224458888873
Q ss_pred hhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCC
Q 001355 884 MQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFD 963 (1093)
Q Consensus 884 l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~ 963 (1093)
||+.-|++|
T Consensus 457 -------------------------------------------------------------dl~~lv~~g---------- 465 (606)
T COG3284 457 -------------------------------------------------------------DLAQLVEQG---------- 465 (606)
T ss_pred -------------------------------------------------------------CHHHHHHcC----------
Confidence 223333333
Q ss_pred chhhhhccccChHHHhhccc-cccccCCCChH-HHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchh
Q 001355 964 SDTICENSGAWLEDFFDQTD-AIAVFQPLNFD-LLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSD 1036 (1093)
Q Consensus 964 ~d~~~e~~~~~~~efl~rId-~~VvF~pld~~-~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~ 1036 (1093)
.|++|||+|+. -.|..+||... +-...+...+.+. ....+.++++++..|+++.|-.+
T Consensus 466 ---------~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~------~~~~~~l~~~~~~~l~~~~WPGN 525 (606)
T COG3284 466 ---------RFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRE------NDWRLQLDDDALARLLAYRWPGN 525 (606)
T ss_pred ---------CchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHc------cCCCccCCHHHHHHHHhCCCCCc
Confidence 89999999999 66889999772 2222222222221 23568999999999999999544
No 46
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.6e-11 Score=137.05 Aligned_cols=131 Identities=24% Similarity=0.268 Sum_probs=98.9
Q ss_pred cccCccHHHHHHHHHHHHHH--------HhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 692 EKVGWQDEAICTISQAVSRW--------RIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~--------rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
+.|.|-++.+++|.++|.-. ..|+..|+ -+|||||||||||.||||+|... +..||++..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPK--------GVLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgS 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPK--------GVLLYGPPGTGKTLLAKAVANQT---DATFIRVVGS 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCC--------ceEeeCCCCCcHHHHHHHHHhcc---CceEEEeccH
Confidence 34778888888888888532 34665553 28999999999999999999876 7889998877
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc----------CHHHHHHHhhhhcCCe
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA----------DPIVQSSLTKAISTGK 833 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia----------d~~vq~~Ll~aLe~Gr 833 (1093)
..- ++|+|. |...+..+++..+++..+||||||||.|+ |.++|..++++|.+-.
T Consensus 220 ElV-----------qKYiGE-----GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlD 283 (406)
T COG1222 220 ELV-----------QKYIGE-----GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLD 283 (406)
T ss_pred HHH-----------HHHhcc-----chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhcc
Confidence 532 345553 23455677777788888999999999644 6899999999998654
Q ss_pred EecCCCeEeecCCcEEEEecCC
Q 001355 834 FTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 834 ~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
-.|.. .|+-||++||.
T Consensus 284 GFD~~------~nvKVI~ATNR 299 (406)
T COG1222 284 GFDPR------GNVKVIMATNR 299 (406)
T ss_pred CCCCC------CCeEEEEecCC
Confidence 44443 46779999995
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.33 E-value=3.6e-11 Score=128.57 Aligned_cols=107 Identities=15% Similarity=0.195 Sum_probs=69.2
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.++||++.+..+.-.+..++... . .--.++|+||||+|||++|+.||..+ +.+|...+....+
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~----~----~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~----- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRG----E----ALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIE----- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTT----S-------EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC-------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcC----C----CcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhh-----
Confidence 678999999988776666554311 1 11369999999999999999999988 4455444322100
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHh-CCceEEEEcccccccCHHHHHHHhhhhcCCeEe
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS-KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFT 835 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~-~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~ 835 (1093)
+ ...+...+.. .++.|+|||||++ ++..+|..|+.+||+|.+.
T Consensus 88 --------------k------~~dl~~il~~l~~~~ILFIDEIHR-lnk~~qe~LlpamEd~~id 131 (233)
T PF05496_consen 88 --------------K------AGDLAAILTNLKEGDILFIDEIHR-LNKAQQEILLPAMEDGKID 131 (233)
T ss_dssp --------------S------CHHHHHHHHT--TT-EEEECTCCC---HHHHHHHHHHHHCSEEE
T ss_pred --------------h------HHHHHHHHHhcCCCcEEEEechhh-ccHHHHHHHHHHhccCeEE
Confidence 0 0122222222 3567999999999 9999999999999999874
No 48
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.33 E-value=1.6e-11 Score=144.40 Aligned_cols=146 Identities=18% Similarity=0.127 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEE
Q 001355 680 PRDYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIH 759 (1093)
Q Consensus 680 ~e~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~ 759 (1093)
.+.+..|.+.|.+.|+|++++|+.+..++.. +..+||.||||+|||.+|++||..+.+.. +|..
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aala---------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~ 71 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEY 71 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHcc---------------CCCEEEECCCChhHHHHHHHHHHHhcccC-ccee
Confidence 4678899999999999999999877766531 13699999999999999999999875543 6766
Q ss_pred eecCCccccCCCCccccCCCcccccccccc---chhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEec
Q 001355 760 VDVSSEQRVSQPNSIFDCQNIDFCDCKLRG---KVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTD 836 (1093)
Q Consensus 760 id~s~~~~~~~~~si~~~~~l~G~~~g~~g---~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d 836 (1093)
+.+..... ..++|...-+.. ..+.....+.+.. ..|+|+|||.+ +++.+|+.|+++|+++.|+.
T Consensus 72 ~~~~fttp----------~DLfG~l~i~~~~~~g~f~r~~~G~L~~--A~lLfLDEI~r-asp~~QsaLLeam~Er~~t~ 138 (498)
T PRK13531 72 LMTRFSTP----------EEVFGPLSIQALKDEGRYQRLTSGYLPE--AEIVFLDEIWK-AGPAILNTLLTAINERRFRN 138 (498)
T ss_pred eeeeecCc----------HHhcCcHHHhhhhhcCchhhhcCCcccc--ccEEeeccccc-CCHHHHHHHHHHHHhCeEec
Confidence 66553110 133332100000 0000000111111 12999999999 99999999999999999997
Q ss_pred CCCeEeecCCcEEEEecCC
Q 001355 837 SYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 837 ~~G~~V~l~naI~IlTSN~ 855 (1093)
+|++..+.--+||.+||.
T Consensus 139 -g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 139 -GAHEEKIPMRLLVTASNE 156 (498)
T ss_pred -CCeEEeCCCcEEEEECCC
Confidence 567777777777777774
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.32 E-value=2.3e-11 Score=137.79 Aligned_cols=104 Identities=17% Similarity=0.260 Sum_probs=71.3
Q ss_pred cccCccHHHHHH---HHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcccc
Q 001355 692 EKVGWQDEAICT---ISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRV 768 (1093)
Q Consensus 692 e~ViGQdeai~~---Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~ 768 (1093)
..|+||++.+.. |.++|... ....++|+||||||||++|+.||... +..|..++....
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~-------------~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~--- 84 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAG-------------HLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTS--- 84 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcC-------------CCceeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccc---
Confidence 457999987633 23332211 12369999999999999999999977 567877765431
Q ss_pred CCCCccccCCCccccccccccchhhhHHHHHH-H---hCCceEEEEcccccccCHHHHHHHhhhhcCCeEe
Q 001355 769 SQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEF-R---SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFT 835 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal-~---~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~ 835 (1093)
|..-+..+.+.- . .....|||||||++ .+..-|+.|+..+|+|.++
T Consensus 85 --------------------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHR-fnK~QQD~lLp~vE~G~ii 134 (436)
T COG2256 85 --------------------GVKDLREIIEEARKNRLLGRRTILFLDEIHR-FNKAQQDALLPHVENGTII 134 (436)
T ss_pred --------------------cHHHHHHHHHHHHHHHhcCCceEEEEehhhh-cChhhhhhhhhhhcCCeEE
Confidence 111122222222 1 12346999999999 9999999999999998754
No 50
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.29 E-value=3.9e-11 Score=145.50 Aligned_cols=128 Identities=16% Similarity=0.224 Sum_probs=80.7
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHh-------ccCCCceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIV-------FGNKGKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~l-------fgs~~~fv~id~s~ 764 (1093)
+.++||++++..+..++. . +.+.+++|+||+|||||++|++|++.. +....+|+.+||..
T Consensus 65 ~~iiGqs~~i~~l~~al~---~----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALC---G----------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred HHeeCcHHHHHHHHHHHh---C----------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 358999999888765431 1 122469999999999999999998743 22356899999874
Q ss_pred c--cccCCCCccccC---CCcccccc-ccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEe
Q 001355 765 E--QRVSQPNSIFDC---QNIDFCDC-KLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFT 835 (1093)
Q Consensus 765 ~--~~~~~~~si~~~---~~l~G~~~-g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~ 835 (1093)
. +...-.+.+.+. +.+.|... |+.|. .+.-.+.+.+..++|||||||+. +++..|+.|+++|+++++.
T Consensus 132 ~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~--~~~~~G~l~~a~gG~L~IdEI~~-L~~~~q~~LL~~Le~~~~~ 205 (531)
T TIGR02902 132 ARFDERGIADPLIGSVHDPIYQGAGPLGIAGI--PQPKPGAVTRAHGGVLFIDEIGE-LHPVQMNKLLKVLEDRKVF 205 (531)
T ss_pred ccCCccccchhhcCCcccchhccccccccCCc--ccccCchhhccCCcEEEEechhh-CCHHHHHHHHHHHHhCeee
Confidence 1 110000011110 11111100 00010 01122345566789999999999 9999999999999988754
No 51
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.25 E-value=7.9e-11 Score=139.56 Aligned_cols=201 Identities=12% Similarity=0.144 Sum_probs=137.1
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccc-cccchhhhHHHHHHHhCC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKP 804 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p 804 (1093)
+.+++++|++|+||+.+|++|+....+...+|+.+||+...... + + ..+||...| |.|... .-.+.+....
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~----~-~-~~lfg~~~~~~~~~~~--~~~g~~~~a~ 233 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESL----L-E-SELFGHEKGAFTGADK--RREGRFVEAD 233 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHH----H-H-HHhcCCCCCCcCCCCc--CCCCceeECC
Confidence 35789999999999999999999888888999999999743210 0 0 234554433 111110 0112233445
Q ss_pred ceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhh
Q 001355 805 YSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQM 884 (1093)
Q Consensus 805 ~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l 884 (1093)
+++||||||+. +++..|..|++++++|.+...++....-.++++|+||+.. . ++
T Consensus 234 ~gtl~ldei~~-l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~---~------------~~---------- 287 (441)
T PRK10365 234 GGTLFLDEIGD-ISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD---L------------AA---------- 287 (441)
T ss_pred CCEEEEecccc-CCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCC---H------------HH----------
Confidence 78999999999 9999999999999999887644432222356788888741 0 00
Q ss_pred hhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCc
Q 001355 885 QTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDS 964 (1093)
Q Consensus 885 ~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~ 964 (1093)
T Consensus 288 -------------------------------------------------------------------------------- 287 (441)
T PRK10365 288 -------------------------------------------------------------------------------- 287 (441)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchh---hH
Q 001355 965 DTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSD---RK 1038 (1093)
Q Consensus 965 d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~---~~ 1038 (1093)
......|.++|++++. ..|..+||.. +|+..++...+.....+.. .....+++++++.|..+.|-.+ ++
T Consensus 288 ---~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~--~~~~~~~~~a~~~L~~~~wpgN~reL~ 362 (441)
T PRK10365 288 ---EVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNR--KAVKGFTPQAMDLLIHYDWPGNIRELE 362 (441)
T ss_pred ---HHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhC--CCCCCcCHHHHHHHHhCCCCCHHHHHH
Confidence 0012257889999998 6688899987 6788888777776554431 1124699999999999999543 45
Q ss_pred HHHHHHH
Q 001355 1039 KAIENWI 1045 (1093)
Q Consensus 1039 r~ie~wv 1045 (1093)
+.+++.+
T Consensus 363 ~~~~~~~ 369 (441)
T PRK10365 363 NAVERAV 369 (441)
T ss_pred HHHHHHH
Confidence 5555443
No 52
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=2.7e-10 Score=134.52 Aligned_cols=137 Identities=21% Similarity=0.237 Sum_probs=83.5
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCce--EEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKL--IHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~f--v~id~s~~~~~ 768 (1093)
.+.|+||+.++..|..++...+. .-.+||+||+|+|||.+|+.||+.+.+....- .+-.|......
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri------------~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i 84 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKI------------GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEI 84 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHH
Confidence 35689999999888877764321 12489999999999999999999986542210 11111110000
Q ss_pred CCCCccccCCCcccccc-ccccchhhhHHHHHHH----hCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEee
Q 001355 769 SQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFR----SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVS 843 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~----~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~ 843 (1093)
....+ ..++..+. ...|.+.+..+.+.+. ...+.|+||||+|. ++...++.|++.||+-
T Consensus 85 ~~g~~----~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~-Ls~~A~NALLKtLEEP----------- 148 (484)
T PRK14956 85 TKGIS----SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHM-LTDQSFNALLKTLEEP----------- 148 (484)
T ss_pred HccCC----ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhh-cCHHHHHHHHHHhhcC-----------
Confidence 00000 01100000 1122223333433333 23566999999999 9999999999999862
Q ss_pred cCCcEEEEecCC
Q 001355 844 ISGMIFVATSTI 855 (1093)
Q Consensus 844 l~naI~IlTSN~ 855 (1093)
-.+++||++|+.
T Consensus 149 p~~viFILaTte 160 (484)
T PRK14956 149 PAHIVFILATTE 160 (484)
T ss_pred CCceEEEeecCC
Confidence 146789988873
No 53
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.21 E-value=1.2e-10 Score=127.81 Aligned_cols=127 Identities=17% Similarity=0.230 Sum_probs=81.5
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..+.||+.++..+..++.+ +- . -.+|||||+|||||..|+++|+.+|+ ...|-+-=|....+....
T Consensus 36 de~~gQe~vV~~L~~a~~~-~~------l------p~~LFyGPpGTGKTStalafar~L~~-~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR-RI------L------PHYLFYGPPGTGKTSTALAFARALNC-EQLFPCRVLELNASDERG 101 (346)
T ss_pred HhhcchHHHHHHHHHHHhh-cC------C------ceEEeeCCCCCcHhHHHHHHHHHhcC-ccccccchhhhccccccc
Confidence 4579999999999998876 22 1 25999999999999999999999998 222211111110000011
Q ss_pred CccccCCCccccccccccchhhhHHHHHH------HhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecC
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEF------RSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSIS 845 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal------~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~ 845 (1093)
.++.. .+. +.+ ..+.... --.|+.||+|||.|- |..+.|..|.+.||+- .+
T Consensus 102 isvvr-~Ki---------k~f-akl~~~~~~~~~~~~~~fKiiIlDEcds-mtsdaq~aLrr~mE~~-----------s~ 158 (346)
T KOG0989|consen 102 ISVVR-EKI---------KNF-AKLTVLLKRSDGYPCPPFKIIILDECDS-MTSDAQAALRRTMEDF-----------SR 158 (346)
T ss_pred ccchh-hhh---------cCH-HHHhhccccccCCCCCcceEEEEechhh-hhHHHHHHHHHHHhcc-----------cc
Confidence 11100 000 000 1111111 123567999999999 9999999999999961 24
Q ss_pred CcEEEEecCC
Q 001355 846 GMIFVATSTI 855 (1093)
Q Consensus 846 naI~IlTSN~ 855 (1093)
.++||+.||.
T Consensus 159 ~trFiLIcny 168 (346)
T KOG0989|consen 159 TTRFILICNY 168 (346)
T ss_pred ceEEEEEcCC
Confidence 6789999996
No 54
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=3e-10 Score=138.65 Aligned_cols=136 Identities=13% Similarity=0.147 Sum_probs=83.4
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC---ccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS---EQR 767 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~---~~~ 767 (1093)
.+.|+||++++..|...|...+. .-.+||+||+|+|||++|+.||+.+++... .-...|+. +..
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL------------~HAyLFtGPpGvGKTTlAriLAKaLnCe~~-~~~~PCG~C~sCr~ 81 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRL------------HHAYLFTGTRGVGKTTLSRIFAKALNCETG-VTSQPCGVCRACRE 81 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhcCccC-CCCCCCcccHHHHH
Confidence 46789999999988877653321 124799999999999999999999875321 11111211 100
Q ss_pred cCCCCccccCCCcccccc-ccccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 768 VSQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 768 ~~~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
...... ..++..+. ..+|.+.+..+.+.+.. ..+.||||||+|. ++...+|.|++.||+-
T Consensus 82 I~~G~h----~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~-LT~~A~NALLKtLEEP---------- 146 (830)
T PRK07003 82 IDEGRF----VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHM-LTNHAFNAMLKTLEEP---------- 146 (830)
T ss_pred HhcCCC----ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhh-CCHHHHHHHHHHHHhc----------
Confidence 000000 01111100 01222223333333332 3567999999999 9999999999999963
Q ss_pred ecCCcEEEEecCC
Q 001355 843 SISGMIFVATSTI 855 (1093)
Q Consensus 843 ~l~naI~IlTSN~ 855 (1093)
-.+++||++||.
T Consensus 147 -P~~v~FILaTtd 158 (830)
T PRK07003 147 -PPHVKFILATTD 158 (830)
T ss_pred -CCCeEEEEEECC
Confidence 246779999884
No 55
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=3e-10 Score=137.18 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=85.5
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCC---c-e---EEeecC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKG---K-L---IHVDVS 763 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~---~-f---v~id~s 763 (1093)
++.|+||++++..|..++...+. + -.+||+||.|+|||++|+.||+.+.+... . . -+..|.
T Consensus 15 FddVIGQe~vv~~L~~al~~gRL-------p-----HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRL-------H-----HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCC-------c-----eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 45799999999988888875533 1 24799999999999999999999976321 0 0 011121
Q ss_pred CccccCCCCccccCCCcccccc-ccccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCC
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY 838 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~ 838 (1093)
.+........ ..++..+. ..+|.+.+..+.+.+.. ..+.|+||||+|. ++...+|.|++.||+-
T Consensus 83 sC~~I~aG~h----pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~-Ls~~AaNALLKTLEEP------ 151 (700)
T PRK12323 83 ACTEIDAGRF----VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHM-LTNHAFNAMLKTLEEP------ 151 (700)
T ss_pred HHHHHHcCCC----CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHh-cCHHHHHHHHHhhccC------
Confidence 1110000000 11111111 01222333344444332 3467999999999 9999999999999962
Q ss_pred CeEeecCCcEEEEecCC
Q 001355 839 GRDVSISGMIFVATSTI 855 (1093)
Q Consensus 839 G~~V~l~naI~IlTSN~ 855 (1093)
-.+++||++||.
T Consensus 152 -----P~~v~FILaTte 163 (700)
T PRK12323 152 -----PEHVKFILATTD 163 (700)
T ss_pred -----CCCceEEEEeCC
Confidence 246779998883
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=3.2e-10 Score=140.78 Aligned_cols=136 Identities=15% Similarity=0.133 Sum_probs=83.3
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc--eEEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK--LIHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--fv~id~s~~~~~ 768 (1093)
.+.|+||+.++..|..++...+. .-.+||+||+|+|||.+|+.||+.+++.... ..+..|..+...
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl------------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRL------------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCC------------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 35789999999988887764432 1246999999999999999999999764210 011111110000
Q ss_pred CCCCccccCCCccccccc-cccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEee
Q 001355 769 SQPNSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVS 843 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~ 843 (1093)
..... ..++-.+.. ..+...++.+.+.+.. .++.||||||+++ ++...++.|++.||+-
T Consensus 83 ~~g~~----~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~-LT~eAqNALLKtLEEP----------- 146 (944)
T PRK14949 83 AQGRF----VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHM-LSRSSFNALLKTLEEP----------- 146 (944)
T ss_pred hcCCC----ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHh-cCHHHHHHHHHHHhcc-----------
Confidence 00000 000000011 1222333444444443 3467999999999 9999999999999962
Q ss_pred cCCcEEEEecC
Q 001355 844 ISGMIFVATST 854 (1093)
Q Consensus 844 l~naI~IlTSN 854 (1093)
-.+++||++|+
T Consensus 147 P~~vrFILaTT 157 (944)
T PRK14949 147 PEHVKFLLATT 157 (944)
T ss_pred CCCeEEEEECC
Confidence 13566888776
No 57
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=1.5e-09 Score=130.90 Aligned_cols=136 Identities=16% Similarity=0.147 Sum_probs=83.2
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc--eEEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK--LIHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--fv~id~s~~~~~ 768 (1093)
.+.|+||+.++..|..++...+. + -.+||+||+|+|||.+|+.||+.+.+.... -.+-.|......
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l-------~-----ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 82 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYL-------H-----HAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI 82 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCC-------C-----eeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence 35689999999988888865432 1 248999999999999999999999764321 001111111000
Q ss_pred CCCCccccCCCcccccc-ccccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEee
Q 001355 769 SQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVS 843 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~ 843 (1093)
..... +.++.-+. ...+.+....+.+.+.. .++.|+||||+|. ++...++.|++.||+-
T Consensus 83 ~~g~~----~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~-ls~~a~naLLk~LEep----------- 146 (509)
T PRK14958 83 DEGRF----PDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHM-LSGHSFNALLKTLEEP----------- 146 (509)
T ss_pred hcCCC----ceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHh-cCHHHHHHHHHHHhcc-----------
Confidence 00000 01111110 11222223333333332 3567999999999 9999999999999962
Q ss_pred cCCcEEEEecC
Q 001355 844 ISGMIFVATST 854 (1093)
Q Consensus 844 l~naI~IlTSN 854 (1093)
-.+++||++|+
T Consensus 147 p~~~~fIlatt 157 (509)
T PRK14958 147 PSHVKFILATT 157 (509)
T ss_pred CCCeEEEEEEC
Confidence 23567888876
No 58
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=1.4e-09 Score=131.84 Aligned_cols=136 Identities=16% Similarity=0.137 Sum_probs=81.8
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc--eEEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK--LIHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--fv~id~s~~~~~ 768 (1093)
...|+||+.++..|..++...+. .-.+||+||+|+|||.+|+++|+.+.+.... -.+-.|..+...
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl------------~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRL------------HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 35689999999888888763322 1258999999999999999999998653210 011111111000
Q ss_pred CCCCccccCCCcccccc-ccccchhhhHHHHHHH----hCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEee
Q 001355 769 SQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFR----SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVS 843 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~----~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~ 843 (1093)
..... ..++..+. ...+...+..+.+.+. ...+.|+||||++. ++...++.|++.||+..
T Consensus 82 ~~g~h----pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~-LS~~A~NALLKtLEEPP---------- 146 (702)
T PRK14960 82 NEGRF----IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHM-LSTHSFNALLKTLEEPP---------- 146 (702)
T ss_pred hcCCC----CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHh-cCHHHHHHHHHHHhcCC----------
Confidence 00000 11110000 0112222233333332 23567999999999 99999999999999621
Q ss_pred cCCcEEEEecC
Q 001355 844 ISGMIFVATST 854 (1093)
Q Consensus 844 l~naI~IlTSN 854 (1093)
.+++||++|+
T Consensus 147 -~~v~FILaTt 156 (702)
T PRK14960 147 -EHVKFLFATT 156 (702)
T ss_pred -CCcEEEEEEC
Confidence 3567888886
No 59
>PLN03025 replication factor C subunit; Provisional
Probab=99.12 E-value=1.5e-09 Score=123.83 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=76.3
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCC--ceEEeecCCccccC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKG--KLIHVDVSSEQRVS 769 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~--~fv~id~s~~~~~~ 769 (1093)
..++||++++..|...+... . - -+++|+||+|+|||++|+++|+.+++... .++.++.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~----~---~------~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~---- 75 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG----N---M------PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD---- 75 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC----C---C------ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc----
Confidence 35789999888776554321 0 0 15899999999999999999999987532 2333332210
Q ss_pred CCCccccCCCccccccccccchhhhHHHHHHH-------hCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 770 QPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR-------SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 770 ~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~-------~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
+|...+..+..... ...+.||+|||+|. +....|+.|++.+|.-
T Consensus 76 ------------------~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~-lt~~aq~aL~~~lE~~---------- 126 (319)
T PLN03025 76 ------------------RGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADS-MTSGAQQALRRTMEIY---------- 126 (319)
T ss_pred ------------------ccHHHHHHHHHHHHhccccCCCCCeEEEEEechhh-cCHHHHHHHHHHHhcc----------
Confidence 11111111111111 12467999999999 9999999999999841
Q ss_pred ecCCcEEEEecCC
Q 001355 843 SISGMIFVATSTI 855 (1093)
Q Consensus 843 ~l~naI~IlTSN~ 855 (1093)
-..++||++||.
T Consensus 127 -~~~t~~il~~n~ 138 (319)
T PLN03025 127 -SNTTRFALACNT 138 (319)
T ss_pred -cCCceEEEEeCC
Confidence 124568888884
No 60
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=1.4e-09 Score=137.12 Aligned_cols=137 Identities=20% Similarity=0.183 Sum_probs=82.7
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc--eEEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK--LIHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--fv~id~s~~~~~ 768 (1093)
+..|+||+.++..|..+|...+. .-.+||+||+|+|||.+|+.||+.+++...+ .-+-.|..+...
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri------------~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~ 81 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRI------------NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVAL 81 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCC------------CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHH
Confidence 35789999999988888764322 1148999999999999999999999753221 111112111000
Q ss_pred CCC--CccccCCCccccccccccchhhhHHHHHHH----hCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 769 SQP--NSIFDCQNIDFCDCKLRGKVLVDYIYQEFR----SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 769 ~~~--~si~~~~~l~G~~~g~~g~~~~~~l~eal~----~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
... .+. +...+.+.. ..|.+.+..+.+.+. ...+.||||||+|+ ++...+|.|+++||+-
T Consensus 82 ~~g~~~~~-dv~eidaas--~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~-lt~~a~NaLLK~LEEp---------- 147 (824)
T PRK07764 82 APGGPGSL-DVTEIDAAS--HGGVDDARELRERAFFAPAESRYKIFIIDEAHM-VTPQGFNALLKIVEEP---------- 147 (824)
T ss_pred HcCCCCCC-cEEEecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEechhh-cCHHHHHHHHHHHhCC----------
Confidence 000 000 000011100 112222233332222 34667999999999 9999999999999962
Q ss_pred ecCCcEEEEecC
Q 001355 843 SISGMIFVATST 854 (1093)
Q Consensus 843 ~l~naI~IlTSN 854 (1093)
-.+++|||+|+
T Consensus 148 -P~~~~fIl~tt 158 (824)
T PRK07764 148 -PEHLKFIFATT 158 (824)
T ss_pred -CCCeEEEEEeC
Confidence 13677888876
No 61
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.11 E-value=1.4e-09 Score=120.77 Aligned_cols=131 Identities=15% Similarity=0.174 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCC
Q 001355 699 EAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQ 778 (1093)
Q Consensus 699 eai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~ 778 (1093)
..+..+.+.+..+... +.+++|.||+|||||.+|++||+.+ +.+|+.++|...... .
T Consensus 5 ~~~~~l~~~~l~~l~~-----------g~~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~~~~---------~ 61 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS-----------GYPVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAELTT---------S 61 (262)
T ss_pred HHHHHHHHHHHHHHhc-----------CCeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCccCCH---------H
Confidence 4455555555554331 1358999999999999999999866 568899988752110 1
Q ss_pred Cccccccccccch-------------------h-hhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCC
Q 001355 779 NIDFCDCKLRGKV-------------------L-VDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY 838 (1093)
Q Consensus 779 ~l~G~~~g~~g~~-------------------~-~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~ 838 (1093)
.++|...++.... + -+.+..+.++ +.+|+||||++ +++++|+.|+.+|++|.++..+
T Consensus 62 dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~--g~~lllDEi~r-~~~~~q~~Ll~~Le~~~~~i~~ 138 (262)
T TIGR02640 62 DLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVRE--GFTLVYDEFTR-SKPETNNVLLSVFEEGVLELPG 138 (262)
T ss_pred HHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHc--CCEEEEcchhh-CCHHHHHHHHHHhcCCeEEccC
Confidence 2222211111100 0 1234444443 46999999999 9999999999999999887644
Q ss_pred C----eEeec-CCcEEEEecCC
Q 001355 839 G----RDVSI-SGMIFVATSTI 855 (1093)
Q Consensus 839 G----~~V~l-~naI~IlTSN~ 855 (1093)
+ ..+.. .+.+||+|+|.
T Consensus 139 ~~~~~~~i~~~~~frvIaTsN~ 160 (262)
T TIGR02640 139 KRGTSRYVDVHPEFRVIFTSNP 160 (262)
T ss_pred CCCCCceEecCCCCEEEEeeCC
Confidence 2 22212 35679999995
No 62
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=2e-09 Score=131.53 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=83.3
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCce-------EEeecC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKL-------IHVDVS 763 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~f-------v~id~s 763 (1093)
.+.|+||+.++..|..++...+. + -.+||+||+|+|||++|+.||+.+++....- -+-.|.
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl-------~-----ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRL-------H-----HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC-------C-----eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 35689999999888887765432 1 2589999999999999999999997532110 011111
Q ss_pred CccccCCCCccccCCCcccccc-ccccchhhhHHHHHHHhCC----ceEEEEcccccccCHHHHHHHhhhhcCCeEecCC
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFRSKP----YSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY 838 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~~~p----~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~ 838 (1093)
.+.......+ ..++.-+. ..+|.+.+..+.+.+...| +.|++|||+|. ++...+|.|++.||+--
T Consensus 83 ~C~~i~~g~h----~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~-Ls~~a~NaLLKtLEEPP----- 152 (618)
T PRK14951 83 ACRDIDSGRF----VDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHM-LTNTAFNAMLKTLEEPP----- 152 (618)
T ss_pred HHHHHHcCCC----CceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhh-CCHHHHHHHHHhcccCC-----
Confidence 1100000000 11111111 1123233344444444333 67999999999 99999999999999621
Q ss_pred CeEeecCCcEEEEecC
Q 001355 839 GRDVSISGMIFVATST 854 (1093)
Q Consensus 839 G~~V~l~naI~IlTSN 854 (1093)
..++||++|+
T Consensus 153 ------~~~~fIL~Tt 162 (618)
T PRK14951 153 ------EYLKFVLATT 162 (618)
T ss_pred ------CCeEEEEEEC
Confidence 3567888876
No 63
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.10 E-value=1.6e-09 Score=132.82 Aligned_cols=136 Identities=15% Similarity=0.134 Sum_probs=83.6
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc--eEEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK--LIHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--fv~id~s~~~~~ 768 (1093)
...|+||+.++..|..++...+. + -.+||+||+|+|||++|+.+|+.+++.... .-+..|..+...
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl-------~-----hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRL-------H-----HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC-------C-----eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 45789999999988877765432 1 147999999999999999999998764210 011112111000
Q ss_pred CCCCccccCCCccccccc-cccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEee
Q 001355 769 SQPNSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVS 843 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~ 843 (1093)
..... ..++-.+.. ..+.+.+..+.+.+.. .++.|+||||+|+ ++...+|.|++.||+-
T Consensus 83 ~~g~~----~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~-Ls~~a~NALLKtLEEP----------- 146 (647)
T PRK07994 83 EQGRF----VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHM-LSRHSFNALLKTLEEP----------- 146 (647)
T ss_pred HcCCC----CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHh-CCHHHHHHHHHHHHcC-----------
Confidence 00000 111101111 1222223334444332 3567999999999 9999999999999962
Q ss_pred cCCcEEEEecC
Q 001355 844 ISGMIFVATST 854 (1093)
Q Consensus 844 l~naI~IlTSN 854 (1093)
-.+++||++|+
T Consensus 147 p~~v~FIL~Tt 157 (647)
T PRK07994 147 PEHVKFLLATT 157 (647)
T ss_pred CCCeEEEEecC
Confidence 23667888876
No 64
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.10 E-value=3.1e-09 Score=120.17 Aligned_cols=105 Identities=14% Similarity=0.158 Sum_probs=70.2
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.++||++.+..|...+...+.... ...+++|+||+|+|||.+|+++|+.+. ..+..++......
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~--------~~~~~ll~Gp~G~GKT~la~~ia~~~~---~~~~~~~~~~~~~---- 68 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQE--------ALDHLLLYGPPGLGKTTLAHIIANEMG---VNLKITSGPALEK---- 68 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCC--------CCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEEeccchhcC----
Confidence 4689999999998888765433211 113589999999999999999998872 2333332211000
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHh-CCceEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS-KPYSVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~-~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
. +.+.+.+.. ....|||||||+. +++..+..|..++++.+
T Consensus 69 -------------~--------~~l~~~l~~~~~~~vl~iDEi~~-l~~~~~e~l~~~~~~~~ 109 (305)
T TIGR00635 69 -------------P--------GDLAAILTNLEEGDVLFIDEIHR-LSPAVEELLYPAMEDFR 109 (305)
T ss_pred -------------c--------hhHHHHHHhcccCCEEEEehHhh-hCHHHHHHhhHHHhhhh
Confidence 0 112222211 2346999999999 99999999999998754
No 65
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=2.2e-09 Score=130.51 Aligned_cols=137 Identities=19% Similarity=0.167 Sum_probs=83.3
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCC--ceEEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKG--KLIHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~--~fv~id~s~~~~~ 768 (1093)
.+.|+||+.++..|..++...+. .-.+||+||+|+|||++|+.||+.+++... ...+-.|..+...
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~ri------------~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i 82 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENRV------------APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKV 82 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCC------------CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHH
Confidence 35689999998888877754321 125999999999999999999999975321 1111112111000
Q ss_pred CCCCccccCCCccccccccccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeec
Q 001355 769 SQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSI 844 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l 844 (1093)
....+.. ...+.+. ..++.+.+..+.+.+.. ..+.||||||+|+ ++...++.|+++||+- .
T Consensus 83 ~~g~hpD-v~eId~a--~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~-Lt~~a~naLLk~LEEP-----------~ 147 (624)
T PRK14959 83 TQGMHVD-VVEIDGA--SNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHM-LTREAFNALLKTLEEP-----------P 147 (624)
T ss_pred hcCCCCc-eEEEecc--cccCHHHHHHHHHHHHhhhhcCCceEEEEEChHh-CCHHHHHHHHHHhhcc-----------C
Confidence 0000000 0001111 01233334445444443 3467999999999 9999999999999962 1
Q ss_pred CCcEEEEecC
Q 001355 845 SGMIFVATST 854 (1093)
Q Consensus 845 ~naI~IlTSN 854 (1093)
.+++||++|+
T Consensus 148 ~~~ifILaTt 157 (624)
T PRK14959 148 ARVTFVLATT 157 (624)
T ss_pred CCEEEEEecC
Confidence 3577888877
No 66
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=2.4e-09 Score=129.30 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=82.1
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc--eEEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK--LIHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--fv~id~s~~~~~ 768 (1093)
.+.|+||+.++..+..++...+. .-.+||+||+|+|||++|+.||+.+.+.... -.+..|..+...
T Consensus 15 f~diiGq~~~v~~L~~~i~~~rl------------~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQKV------------HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 35689999999888877754321 1248999999999999999999988753210 001111110000
Q ss_pred CCCCccccCCCcccccc-ccccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEee
Q 001355 769 SQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVS 843 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~ 843 (1093)
..... ..++..+. ...|....+.+.+.+.. ..+.||||||+|+ ++...++.|++.||+.-
T Consensus 83 ~~~~~----~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~-ls~~a~naLLK~LEepp---------- 147 (546)
T PRK14957 83 NNNSF----IDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHM-LSKQSFNALLKTLEEPP---------- 147 (546)
T ss_pred hcCCC----CceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhh-ccHHHHHHHHHHHhcCC----------
Confidence 00000 11111000 11222233344444433 3467999999999 99999999999999731
Q ss_pred cCCcEEEEecC
Q 001355 844 ISGMIFVATST 854 (1093)
Q Consensus 844 l~naI~IlTSN 854 (1093)
..++||++|+
T Consensus 148 -~~v~fIL~Tt 157 (546)
T PRK14957 148 -EYVKFILATT 157 (546)
T ss_pred -CCceEEEEEC
Confidence 3566887775
No 67
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.09 E-value=2.3e-09 Score=132.17 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=78.0
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhcc-------CCCceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFG-------NKGKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfg-------s~~~fv~id~s~ 764 (1093)
..++||+.++..+...+... . +..++|+||+|||||++|+.++..... ...+|+.+|+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~-----~--------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP-----F--------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC-----C--------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 35789999888765544211 1 125999999999999999999987632 246799999876
Q ss_pred ccccCCCCccccCCCccccccc--cccch-------hhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEe
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCK--LRGKV-------LVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFT 835 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g--~~g~~-------~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~ 835 (1093)
..... ..+. ..++|.... +.+.. ..+...+.+....++||||||++. +++..|..|+++|+++++.
T Consensus 221 l~~d~--~~i~--~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~-Ld~~~Q~~Ll~~Le~~~v~ 295 (615)
T TIGR02903 221 LRWDP--REVT--NPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGE-LDPLLQNKLLKVLEDKRVE 295 (615)
T ss_pred ccCCH--HHHh--HHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEecccc-CCHHHHHHHHHHHhhCeEE
Confidence 42100 0000 012221100 00000 000111123344567999999999 9999999999999988754
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.08 E-value=2e-09 Score=127.09 Aligned_cols=106 Identities=15% Similarity=0.251 Sum_probs=70.8
Q ss_pred cccCccHHHHHH---HHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcccc
Q 001355 692 EKVGWQDEAICT---ISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRV 768 (1093)
Q Consensus 692 e~ViGQdeai~~---Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~ 768 (1093)
+.++||++++.. +...+...+ ...++|+||+|||||++|+.||+.+ ...|+.+++.....
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~-------------~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~~~- 74 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR-------------LSSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTSGV- 74 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC-------------CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecccccH-
Confidence 358999988765 555553211 0258999999999999999999977 45677777553100
Q ss_pred CCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 769 SQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
...+ ...+.+........+.|||||||++ ++...|+.|+..+++|.
T Consensus 75 ----------------~~ir--~ii~~~~~~~~~g~~~vL~IDEi~~-l~~~~q~~LL~~le~~~ 120 (413)
T PRK13342 75 ----------------KDLR--EVIEEARQRRSAGRRTILFIDEIHR-FNKAQQDALLPHVEDGT 120 (413)
T ss_pred ----------------HHHH--HHHHHHHHhhhcCCceEEEEechhh-hCHHHHHHHHHHhhcCc
Confidence 0000 0111111111223567999999999 99999999999998754
No 69
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.08 E-value=7.3e-09 Score=118.76 Aligned_cols=107 Identities=13% Similarity=0.186 Sum_probs=71.7
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.++||++.+..+...+...+.... ....++|+||+|+|||.+|+++|+.+ ...+..++......
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~--------~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~~~~~---- 89 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGE--------ALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGPALEK---- 89 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCC--------CCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecccccC----
Confidence 4579999999998888876543211 11258999999999999999999987 22333333221100
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeE
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKF 834 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~ 834 (1093)
.+ . +..+...+ ..+.|||||||+. ++...+..|..+++..++
T Consensus 90 -------------~~----~-l~~~l~~l--~~~~vl~IDEi~~-l~~~~~e~l~~~~e~~~~ 131 (328)
T PRK00080 90 -------------PG----D-LAAILTNL--EEGDVLFIDEIHR-LSPVVEEILYPAMEDFRL 131 (328)
T ss_pred -------------hH----H-HHHHHHhc--ccCCEEEEecHhh-cchHHHHHHHHHHHhcce
Confidence 00 1 11122222 3467999999999 998899999999986543
No 70
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=2.8e-09 Score=130.29 Aligned_cols=135 Identities=14% Similarity=0.145 Sum_probs=82.4
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcc---c
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQ---R 767 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~---~ 767 (1093)
...|+||+.++..|..++...+. .-.+||+||+|+|||++|+.||+.+++.... ...-|+... .
T Consensus 15 FddIIGQe~vv~~L~~ai~~~rl------------~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~-~~~pCg~C~sCr~ 81 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGRL------------HHAYLLTGTRGVGKTTIARILAKSLNCENAQ-HGEPCGVCQSCTQ 81 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCcHHHHHHHHHHHhcccCCC-CCCCCcccHHHHH
Confidence 35789999999988888764321 1258999999999999999999998764321 111121100 0
Q ss_pred cCCCCccccCCCccccc-cccccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 768 VSQPNSIFDCQNIDFCD-CKLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 768 ~~~~~si~~~~~l~G~~-~g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
...... ..++..+ ...+|.+.+..+.+.+.. ..+.||||||+|+ ++...++.|++.||+-
T Consensus 82 i~~g~~----~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~-Ls~~A~NALLKtLEEP---------- 146 (709)
T PRK08691 82 IDAGRY----VDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHM-LSKSAFNAMLKTLEEP---------- 146 (709)
T ss_pred HhccCc----cceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccc-cCHHHHHHHHHHHHhC----------
Confidence 000000 0110000 001222223333333322 3457999999999 9999999999999952
Q ss_pred ecCCcEEEEecC
Q 001355 843 SISGMIFVATST 854 (1093)
Q Consensus 843 ~l~naI~IlTSN 854 (1093)
-.+++||++|+
T Consensus 147 -p~~v~fILaTt 157 (709)
T PRK08691 147 -PEHVKFILATT 157 (709)
T ss_pred -CCCcEEEEEeC
Confidence 13567888886
No 71
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.07 E-value=2.2e-09 Score=115.34 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=83.5
Q ss_pred HHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccc
Q 001355 688 IALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQR 767 (1093)
Q Consensus 688 ~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~ 767 (1093)
+.-...|+||++|... ++.|........+-+.+- +-.+||+||+|||||++|++||... ..+|+.+....
T Consensus 117 ~it~ddViGqEeAK~k-crli~~yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~---kvp~l~vkat~--- 186 (368)
T COG1223 117 DITLDDVIGQEEAKRK-CRLIMEYLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATE--- 186 (368)
T ss_pred cccHhhhhchHHHHHH-HHHHHHHhhChHHhcccC---cceeEEECCCCccHHHHHHHHhccc---CCceEEechHH---
Confidence 3345789999998654 222222211111111111 1259999999999999999999765 77888777543
Q ss_pred cCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc-C----------HHHHHHHhhhhcCCeEec
Q 001355 768 VSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA-D----------PIVQSSLTKAISTGKFTD 836 (1093)
Q Consensus 768 ~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia-d----------~~vq~~Ll~aLe~Gr~~d 836 (1093)
++|...| -|...+..+++..++...+||||||+|.|+ | .++.|+|+.-|+. -- .
T Consensus 187 ------------liGehVG-dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg-i~-e 251 (368)
T COG1223 187 ------------LIGEHVG-DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG-IK-E 251 (368)
T ss_pred ------------HHHHHhh-hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccC-cc-c
Confidence 3333222 122345566777777777999999999744 2 3567778777762 11 1
Q ss_pred CCCeEeecCCcEEEEecCC
Q 001355 837 SYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 837 ~~G~~V~l~naI~IlTSN~ 855 (1093)
. ..+.+|++||.
T Consensus 252 n-------eGVvtIaaTN~ 263 (368)
T COG1223 252 N-------EGVVTIAATNR 263 (368)
T ss_pred C-------CceEEEeecCC
Confidence 1 23557777773
No 72
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=4.7e-09 Score=125.31 Aligned_cols=136 Identities=14% Similarity=0.143 Sum_probs=82.1
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCce--EEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKL--IHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~f--v~id~s~~~~~ 768 (1093)
.+.|+||+.++..+..++...+. + -.+||+||+|+|||++|+.+|+.+.....+- .+-.|..+...
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri-------~-----ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i 79 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKI-------P-----QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISI 79 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC-------C-----ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHH
Confidence 35689999999877776654321 1 2599999999999999999999875432210 01111110000
Q ss_pred CCCCccccCCCccccc-cccccchhhhHHHHHHHhCC----ceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEee
Q 001355 769 SQPNSIFDCQNIDFCD-CKLRGKVLVDYIYQEFRSKP----YSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVS 843 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~-~g~~g~~~~~~l~eal~~~p----~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~ 843 (1093)
....+ ..++--+ ....|.+.+..+.+.+...| +.|++|||++. ++...++.|++.||+-.
T Consensus 80 ~~~~~----~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~-Ls~~A~NaLLK~LEePp---------- 144 (491)
T PRK14964 80 KNSNH----PDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHM-LSNSAFNALLKTLEEPA---------- 144 (491)
T ss_pred hccCC----CCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHh-CCHHHHHHHHHHHhCCC----------
Confidence 00000 0000000 01123333444445544443 46999999999 99999999999999621
Q ss_pred cCCcEEEEecC
Q 001355 844 ISGMIFVATST 854 (1093)
Q Consensus 844 l~naI~IlTSN 854 (1093)
..++||++|+
T Consensus 145 -~~v~fIlatt 154 (491)
T PRK14964 145 -PHVKFILATT 154 (491)
T ss_pred -CCeEEEEEeC
Confidence 3567888876
No 73
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=4.8e-09 Score=127.82 Aligned_cols=135 Identities=18% Similarity=0.150 Sum_probs=83.7
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCce--EEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKL--IHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~f--v~id~s~~~~~ 768 (1093)
.+.|+||+.++..|..++...+. .-.+||+||+|+|||++|+.+|+.+++...+- -+-.|..+...
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 79 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRI------------NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVAL 79 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHh
Confidence 35689999999988888764321 12489999999999999999999998642211 11112111100
Q ss_pred CC---CC-ccccCCCccccccccccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCe
Q 001355 769 SQ---PN-SIFDCQNIDFCDCKLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGR 840 (1093)
Q Consensus 769 ~~---~~-si~~~~~l~G~~~g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~ 840 (1093)
.. .+ .+. .+.+. ...|.+.+..+.+.+.. .++.||||||++. ++...++.|++.||+-
T Consensus 80 ~~~~~~~~dvi---eidaa--s~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~-Lt~~A~NALLK~LEEp-------- 145 (584)
T PRK14952 80 APNGPGSIDVV---ELDAA--SHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHM-VTTAGFNALLKIVEEP-------- 145 (584)
T ss_pred hcccCCCceEE---Eeccc--cccCHHHHHHHHHHHHhhhhcCCceEEEEECCCc-CCHHHHHHHHHHHhcC--------
Confidence 00 00 000 01111 11233333344443332 4567999999999 9999999999999961
Q ss_pred EeecCCcEEEEecC
Q 001355 841 DVSISGMIFVATST 854 (1093)
Q Consensus 841 ~V~l~naI~IlTSN 854 (1093)
-.+++||++|+
T Consensus 146 ---p~~~~fIL~tt 156 (584)
T PRK14952 146 ---PEHLIFIFATT 156 (584)
T ss_pred ---CCCeEEEEEeC
Confidence 23677888876
No 74
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=6.2e-09 Score=121.04 Aligned_cols=136 Identities=16% Similarity=0.124 Sum_probs=80.5
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCce--EEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKL--IHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~f--v~id~s~~~~~ 768 (1093)
.+.|+||++++..+..++...+. + -.++|+||+|+|||++|+++|+.+++....- .+..|......
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~-------~-----h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRI-------H-----HAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCC-------C-----eEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 35689999999988777754321 1 1479999999999999999999986532110 01111100000
Q ss_pred CCCCccccCCCccccccc-cccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEee
Q 001355 769 SQPNSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVS 843 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~ 843 (1093)
..... ..+...+.. ..+......+.+.+... .+.||||||+|+ ++...++.|++.+++..
T Consensus 83 ~~~~~----~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~-l~~~a~naLLk~lEe~~---------- 147 (363)
T PRK14961 83 EKGLC----LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHM-LSRHSFNALLKTLEEPP---------- 147 (363)
T ss_pred hcCCC----CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhh-cCHHHHHHHHHHHhcCC----------
Confidence 00000 011100011 01112233444444333 356999999999 99999999999999621
Q ss_pred cCCcEEEEecC
Q 001355 844 ISGMIFVATST 854 (1093)
Q Consensus 844 l~naI~IlTSN 854 (1093)
.+++||++|+
T Consensus 148 -~~~~fIl~t~ 157 (363)
T PRK14961 148 -QHIKFILATT 157 (363)
T ss_pred -CCeEEEEEcC
Confidence 2566888776
No 75
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=4.4e-09 Score=125.69 Aligned_cols=135 Identities=21% Similarity=0.236 Sum_probs=78.8
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc---ccc
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE---QRV 768 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~---~~~ 768 (1093)
..|+||++++..|..++...+. .-.++|+||+|+|||++|+++|+.+.+...... ..|..+ ...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l------------~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~-~pc~~c~~c~~i 80 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSI------------SHAYIFAGPRGTGKTTVARILAKSLNCENRKGV-EPCNECRACRSI 80 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCC-CCCcccHHHHHH
Confidence 5699999998777766553321 124899999999999999999999865432110 111110 000
Q ss_pred CCCCccccCCCccccccccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeec
Q 001355 769 SQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSI 844 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l 844 (1093)
...... ....+.+. ..+|...+..+.+.+... .+.||||||++. ++...++.|+..|++. -
T Consensus 81 ~~g~~~-dv~el~aa--~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~-Lt~~a~~~LLk~LE~p-----------~ 145 (472)
T PRK14962 81 DEGTFM-DVIELDAA--SNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHM-LTKEAFNALLKTLEEP-----------P 145 (472)
T ss_pred hcCCCC-ccEEEeCc--ccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHH-hHHHHHHHHHHHHHhC-----------C
Confidence 000000 00001000 112323333444444433 356999999999 9999999999999852 1
Q ss_pred CCcEEEEecC
Q 001355 845 SGMIFVATST 854 (1093)
Q Consensus 845 ~naI~IlTSN 854 (1093)
.+++||++|+
T Consensus 146 ~~vv~Ilatt 155 (472)
T PRK14962 146 SHVVFVLATT 155 (472)
T ss_pred CcEEEEEEeC
Confidence 2466777665
No 76
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.03 E-value=6.7e-09 Score=129.52 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=67.8
Q ss_pred cccCccHHHHHH---HHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcccc
Q 001355 692 EKVGWQDEAICT---ISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRV 768 (1093)
Q Consensus 692 e~ViGQdeai~~---Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~ 768 (1093)
+.++||++.+.. +...+... ...+++|+||+|+|||++|++||+.+ ...|+.+++....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~-------------~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~~~~-- 89 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD-------------RVGSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAVLAG-- 89 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhhhhh--
Confidence 357899988753 33333211 11268999999999999999999876 4566766654210
Q ss_pred CCCCccccCCCccccccccccchhhhHHHHHHH-hCCceEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 769 SQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR-SKPYSVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~-~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
. ... ......+...+. ...+.||||||||. ++...|+.|+..+++|.
T Consensus 90 --------------i-~di--r~~i~~a~~~l~~~~~~~IL~IDEIh~-Ln~~qQdaLL~~lE~g~ 137 (725)
T PRK13341 90 --------------V-KDL--RAEVDRAKERLERHGKRTILFIDEVHR-FNKAQQDALLPWVENGT 137 (725)
T ss_pred --------------h-HHH--HHHHHHHHHHhhhcCCceEEEEeChhh-CCHHHHHHHHHHhcCce
Confidence 0 000 001111111111 12456999999999 99999999999998764
No 77
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=5.9e-09 Score=127.77 Aligned_cols=137 Identities=17% Similarity=0.187 Sum_probs=84.6
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc--eEEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK--LIHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--fv~id~s~~~~~ 768 (1093)
.+.|+||++++..|..++...+. .-.+||+||+|+|||++|+.||+.+++.... --+-.|..+...
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~------------~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRV------------AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 45799999999888887764321 1247999999999999999999998754221 011111111000
Q ss_pred CCCCccccCCCccccccccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeec
Q 001355 769 SQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSI 844 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l 844 (1093)
...++. +...+.|. +..|.+.++.+.+.+... ++.|+||||+|. ++...++.|++.||+- -
T Consensus 83 ~~g~~~-d~~eid~~--s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~-Lt~~a~naLLk~LEep-----------p 147 (576)
T PRK14965 83 TEGRSV-DVFEIDGA--SNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHM-LSTNAFNALLKTLEEP-----------P 147 (576)
T ss_pred hcCCCC-Ceeeeecc--CccCHHHHHHHHHHHHhccccCCceEEEEEChhh-CCHHHHHHHHHHHHcC-----------C
Confidence 000000 00001111 112323344455555444 456999999999 9999999999999962 2
Q ss_pred CCcEEEEecC
Q 001355 845 SGMIFVATST 854 (1093)
Q Consensus 845 ~naI~IlTSN 854 (1093)
.+++||++|+
T Consensus 148 ~~~~fIl~t~ 157 (576)
T PRK14965 148 PHVKFIFATT 157 (576)
T ss_pred CCeEEEEEeC
Confidence 3677888887
No 78
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=9.8e-09 Score=125.38 Aligned_cols=135 Identities=18% Similarity=0.174 Sum_probs=84.1
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc---cc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE---QR 767 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~---~~ 767 (1093)
...|+||++++..+..++...+. .-.+||+||+|+|||.+|+.+|+.+.+....- ...|+.+ ..
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~------------~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-~~pC~~C~~C~~ 81 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKI------------SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-GEPCNECEICKA 81 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCccHHHHH
Confidence 45799999999888887765322 12589999999999999999999987543210 0112211 00
Q ss_pred cCCCCccccCCCcccccc-ccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 768 VSQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 768 ~~~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
.....+ ..++-.+. ...|.+.++.+.+.+... .+.|++|||+|. +....++.|++.+|+-
T Consensus 82 i~~g~~----~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~-Lt~~a~naLLKtLEep---------- 146 (559)
T PRK05563 82 ITNGSL----MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHM-LSTGAFNALLKTLEEP---------- 146 (559)
T ss_pred HhcCCC----CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECccc-CCHHHHHHHHHHhcCC----------
Confidence 000000 01000000 112333344555555433 456999999999 9999999999999863
Q ss_pred ecCCcEEEEecC
Q 001355 843 SISGMIFVATST 854 (1093)
Q Consensus 843 ~l~naI~IlTSN 854 (1093)
-.+++||++|+
T Consensus 147 -p~~~ifIlatt 157 (559)
T PRK05563 147 -PAHVIFILATT 157 (559)
T ss_pred -CCCeEEEEEeC
Confidence 13577888776
No 79
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.00 E-value=5.4e-09 Score=122.55 Aligned_cols=131 Identities=24% Similarity=0.254 Sum_probs=86.3
Q ss_pred cccCccHHHHHHHHHHHHHHHh--------cCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 692 EKVGWQDEAICTISQAVSRWRI--------GNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rs--------g~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..|.|.++++..|...|..... |...+ ..+||+||+|||||.+|+++|..+ ..+|+.++++
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p--------~gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPP--------KGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGS 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCC--------CceEEECCCCCChHHHHHHHHHHh---CCCEEEeehH
Confidence 3578899998888888754321 22222 249999999999999999999987 4578888876
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc----------CHHHHHHHhhhhcCCe
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA----------DPIVQSSLTKAISTGK 833 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia----------d~~vq~~Ll~aLe~Gr 833 (1093)
... ..++|... .....+.+..+.+..+||||||||.|+ +..++..|.+++..-.
T Consensus 200 ~l~-----------~~~~g~~~-----~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld 263 (389)
T PRK03992 200 ELV-----------QKFIGEGA-----RLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD 263 (389)
T ss_pred HHh-----------HhhccchH-----HHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcc
Confidence 531 12222211 223344455555566899999999832 4677888888775422
Q ss_pred EecCCCeEeecCCcEEEEecCC
Q 001355 834 FTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 834 ~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
-.. ...+++||+|||.
T Consensus 264 ~~~------~~~~v~VI~aTn~ 279 (389)
T PRK03992 264 GFD------PRGNVKIIAATNR 279 (389)
T ss_pred ccC------CCCCEEEEEecCC
Confidence 111 1236778999984
No 80
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=6.5e-09 Score=128.19 Aligned_cols=135 Identities=15% Similarity=0.185 Sum_probs=86.3
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQ 770 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~ 770 (1093)
.+.|+||+.++..+..++...+. + -.+||+||+|+|||.+|+++|+.+++.......--|..+.....
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl-------~-----HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~ 84 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKI-------S-----HAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVN 84 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC-------C-----eEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhc
Confidence 35689999999888888764321 1 24899999999999999999999976432211111221110000
Q ss_pred CCccccCCCcc-ccccccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecC
Q 001355 771 PNSIFDCQNID-FCDCKLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSIS 845 (1093)
Q Consensus 771 ~~si~~~~~l~-G~~~g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~ 845 (1093)
.+ ..++ +...+..|...++.+.+.+... ++.|++|||+|. +....++.|++.||+- -.
T Consensus 85 ~~-----~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~-LT~~A~NALLKtLEEP-----------P~ 147 (725)
T PRK07133 85 NS-----LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHM-LSKSAFNALLKTLEEP-----------PK 147 (725)
T ss_pred CC-----CcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhh-CCHHHHHHHHHHhhcC-----------CC
Confidence 00 1111 1101113334455666666654 456999999999 9999999999999963 13
Q ss_pred CcEEEEecC
Q 001355 846 GMIFVATST 854 (1093)
Q Consensus 846 naI~IlTSN 854 (1093)
.++||++|+
T Consensus 148 ~tifILaTt 156 (725)
T PRK07133 148 HVIFILATT 156 (725)
T ss_pred ceEEEEEcC
Confidence 567888775
No 81
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=1e-08 Score=124.41 Aligned_cols=135 Identities=13% Similarity=0.154 Sum_probs=82.9
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcc---c
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQ---R 767 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~---~ 767 (1093)
...|+||+.++..+..++...+. .-.+||+||+|+|||++|+.+|+.+++.... ..-.|+.+. .
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~------------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~~~pcg~C~~C~~ 81 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRL------------HHAYLFTGTRGVGKTTLARILAKSLNCETGV-TATPCGVCSACLE 81 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC------------CEEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CCCCCCCCHHHHH
Confidence 35689999999988888764322 1247999999999999999999999763211 001122110 0
Q ss_pred cCCCCccccCCCccccccc-cccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 768 VSQPNSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 768 ~~~~~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
...... ..++..+.. ..+.+.+..+.+.+... ++.|+||||+|+ ++...++.|++.||+-.
T Consensus 82 i~~~~~----~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~-ls~~a~naLLK~LEepp--------- 147 (527)
T PRK14969 82 IDSGRF----VDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHM-LSKSAFNAMLKTLEEPP--------- 147 (527)
T ss_pred HhcCCC----CceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCccc-CCHHHHHHHHHHHhCCC---------
Confidence 000000 111111111 12223334444444433 356999999999 99999999999999621
Q ss_pred ecCCcEEEEecC
Q 001355 843 SISGMIFVATST 854 (1093)
Q Consensus 843 ~l~naI~IlTSN 854 (1093)
.+++||++|+
T Consensus 148 --~~~~fIL~t~ 157 (527)
T PRK14969 148 --EHVKFILATT 157 (527)
T ss_pred --CCEEEEEEeC
Confidence 3567888776
No 82
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=1.1e-08 Score=123.42 Aligned_cols=136 Identities=18% Similarity=0.126 Sum_probs=82.2
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc-eEEeecCCccccCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK-LIHVDVSSEQRVSQ 770 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~-fv~id~s~~~~~~~ 770 (1093)
+.|+||++++..|...+...+. .-.+||+||+|+|||++|+++|+.+...... ..+..|........
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l------------~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~ 81 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRL------------GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRR 81 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhc
Confidence 4689999998888877764321 1247999999999999999999998653211 11111111000000
Q ss_pred CCccccCCCccccc-cccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecC
Q 001355 771 PNSIFDCQNIDFCD-CKLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSIS 845 (1093)
Q Consensus 771 ~~si~~~~~l~G~~-~g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~ 845 (1093)
..+ +.+..-+ .+..+...++.+.+.+... .+.||||||+|. ++...++.|++.|++. -.
T Consensus 82 ~~h----~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~-ls~~a~naLLk~LEep-----------~~ 145 (504)
T PRK14963 82 GAH----PDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHM-MSKSAFNALLKTLEEP-----------PE 145 (504)
T ss_pred CCC----CceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccc-cCHHHHHHHHHHHHhC-----------CC
Confidence 000 0110000 0112333334454444433 456999999999 9999999999999862 13
Q ss_pred CcEEEEecCC
Q 001355 846 GMIFVATSTI 855 (1093)
Q Consensus 846 naI~IlTSN~ 855 (1093)
+++||++++.
T Consensus 146 ~t~~Il~t~~ 155 (504)
T PRK14963 146 HVIFILATTE 155 (504)
T ss_pred CEEEEEEcCC
Confidence 5678887763
No 83
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=1.2e-08 Score=122.60 Aligned_cols=133 Identities=17% Similarity=0.131 Sum_probs=81.5
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCC---------ceEEeec
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKG---------KLIHVDV 762 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~---------~fv~id~ 762 (1093)
..++||+.++..+..++...+. .-.+||+||+|+|||++|+.+|+.+.+... ...+-+|
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri------------~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRL------------AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC------------CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 4579999999888777654321 125899999999999999999999865321 0111112
Q ss_pred CCccccCCCCccccCCCccccccccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCC
Q 001355 763 SSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY 838 (1093)
Q Consensus 763 s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~ 838 (1093)
.........+ +. .+.+. ...|...++.+.+..... .+.||+|||++. ++...++.|++.|++.
T Consensus 89 ~~i~~~~h~D-v~---eidaa--s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~-Ls~~a~naLLk~LEep------ 155 (507)
T PRK06645 89 ISFNNHNHPD-II---EIDAA--SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHM-LSKGAFNALLKTLEEP------ 155 (507)
T ss_pred HHHhcCCCCc-EE---Eeecc--CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhh-cCHHHHHHHHHHHhhc------
Confidence 1111110000 00 00000 112333334444444433 456999999999 9999999999999952
Q ss_pred CeEeecCCcEEEEecC
Q 001355 839 GRDVSISGMIFVATST 854 (1093)
Q Consensus 839 G~~V~l~naI~IlTSN 854 (1093)
-..++||++|+
T Consensus 156 -----p~~~vfI~aTt 166 (507)
T PRK06645 156 -----PPHIIFIFATT 166 (507)
T ss_pred -----CCCEEEEEEeC
Confidence 13567888776
No 84
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.95 E-value=1.8e-08 Score=115.12 Aligned_cols=136 Identities=19% Similarity=0.228 Sum_probs=81.4
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCC--CceEEeecCCccccC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNK--GKLIHVDVSSEQRVS 769 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~--~~fv~id~s~~~~~~ 769 (1093)
..++||++++..+..++...+ - -+++|+||+|+|||++|+++++.+++.. .+++++++..+....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~-------~------~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN-------L------PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG 81 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC-------C------ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc
Confidence 457899998888777654210 0 1589999999999999999999987653 457888876532110
Q ss_pred CCCccccCC---CccccccccccchhhhHHHHHHH--------hCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCC
Q 001355 770 QPNSIFDCQ---NIDFCDCKLRGKVLVDYIYQEFR--------SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY 838 (1093)
Q Consensus 770 ~~~si~~~~---~l~G~~~g~~g~~~~~~l~eal~--------~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~ 838 (1093)
. ..+...+ .+.+.. +..+....+.+.+.++ ..+..||+|||++. ++...++.|.++++...
T Consensus 82 ~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~-l~~~~~~~L~~~le~~~----- 153 (337)
T PRK12402 82 K-KYLVEDPRFAHFLGTD-KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEA-LREDAQQALRRIMEQYS----- 153 (337)
T ss_pred h-hhhhcCcchhhhhhhh-hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCccc-CCHHHHHHHHHHHHhcc-----
Confidence 0 0000000 001110 0000011122222211 13356999999999 99999999999998531
Q ss_pred CeEeecCCcEEEEecC
Q 001355 839 GRDVSISGMIFVATST 854 (1093)
Q Consensus 839 G~~V~l~naI~IlTSN 854 (1093)
.+++||++++
T Consensus 154 ------~~~~~Il~~~ 163 (337)
T PRK12402 154 ------RTCRFIIATR 163 (337)
T ss_pred ------CCCeEEEEeC
Confidence 2355777776
No 85
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.2e-08 Score=121.88 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=80.2
Q ss_pred CCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCc
Q 001355 230 GKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPG 306 (1093)
Q Consensus 230 k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~g 306 (1093)
-+++++.|-+|.| .++.+++. .+++++.+. -.+++ .++=||-|..|...-.+..+. ..+
T Consensus 218 prg~Ll~gppg~Gkt~l~~aVa~e-------------~~a~~~~i~--~peli--~k~~gEte~~LR~~f~~a~k~-~~p 279 (693)
T KOG0730|consen 218 PRGLLLYGPPGTGKTFLVRAVANE-------------YGAFLFLIN--GPELI--SKFPGETESNLRKAFAEALKF-QVP 279 (693)
T ss_pred CCCccccCCCCCChHHHHHHHHHH-------------hCceeEecc--cHHHH--HhcccchHHHHHHHHHHHhcc-CCC
Confidence 4689999999987 47767766 246666666 33332 234567777666666555542 339
Q ss_pred EEEEeCcchhhhcCCC-cchHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCC-CCc
Q 001355 307 VVVNYGELKVLVSDSV-STEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDN-DWD 373 (1093)
Q Consensus 307 vil~igdl~~~v~~~~-~~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~-~w~ 373 (1093)
.|+||+||.-+++... ..+.-+.+|+.+-.|+.. ..++++-+|+++ .+--.-||++-+ +||
T Consensus 280 sii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~at------nrp~sld~alRRgRfd 343 (693)
T KOG0730|consen 280 SIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAAT------NRPDSLDPALRRGRFD 343 (693)
T ss_pred eeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEec------CCccccChhhhcCCCc
Confidence 9999999999998543 233577888888888864 346789999985 233345677765 554
No 86
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.93 E-value=2.2e-08 Score=122.60 Aligned_cols=136 Identities=17% Similarity=0.153 Sum_probs=84.5
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc-----e--EEeecC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK-----L--IHVDVS 763 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~-----f--v~id~s 763 (1093)
.+.|+||+.++..|..++...+. + -.+||+||+|+|||.+|+.||+.+++.... . .+-.|.
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri-------~-----ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~ 90 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRI-------A-----QAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGE 90 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC-------C-----ceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccH
Confidence 35789999999998888764322 1 258999999999999999999998754211 0 011111
Q ss_pred CccccCCCCccccCCCccccc-cccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCC
Q 001355 764 SEQRVSQPNSIFDCQNIDFCD-CKLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY 838 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~-~g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~ 838 (1093)
.+.......+ +.++-.+ ....|.+.+..+.+.++.. ++.||||||+|. ++...++.|++.||+-
T Consensus 91 ~C~~i~~g~h----~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~-Ls~~a~naLLKtLEeP------ 159 (598)
T PRK09111 91 HCQAIMEGRH----VDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHM-LSTAAFNALLKTLEEP------ 159 (598)
T ss_pred HHHHHhcCCC----CceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHh-CCHHHHHHHHHHHHhC------
Confidence 1100000000 1111100 1123333344455555544 467999999999 9999999999999962
Q ss_pred CeEeecCCcEEEEecC
Q 001355 839 GRDVSISGMIFVATST 854 (1093)
Q Consensus 839 G~~V~l~naI~IlTSN 854 (1093)
-..++|||+|+
T Consensus 160 -----p~~~~fIl~tt 170 (598)
T PRK09111 160 -----PPHVKFIFATT 170 (598)
T ss_pred -----CCCeEEEEEeC
Confidence 13567888776
No 87
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.93 E-value=1.6e-08 Score=122.59 Aligned_cols=135 Identities=17% Similarity=0.178 Sum_probs=84.0
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc--eEEeecCCccccC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK--LIHVDVSSEQRVS 769 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--fv~id~s~~~~~~ 769 (1093)
..|+||+.++..+..++...+. + -.+||+||+|+|||.+|+.+|+.+.+.... ..+-.|..+....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl-------~-----hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKL-------T-----HAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC-------C-----ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 5689999999888877754322 1 149999999999999999999999754321 1112222110000
Q ss_pred CCCccccCCCcccccc-ccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeec
Q 001355 770 QPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSI 844 (1093)
Q Consensus 770 ~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l 844 (1093)
...+ +.++..+. +..|...++.+.+.+... ++.|++|||+|. ++...++.|++.||+..
T Consensus 84 ~~~h----~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~-Lt~~A~NaLLKtLEEPp----------- 147 (605)
T PRK05896 84 TNQS----VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHM-LSTSAWNALLKTLEEPP----------- 147 (605)
T ss_pred cCCC----CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHh-CCHHHHHHHHHHHHhCC-----------
Confidence 0000 11111110 112333344555544444 356999999999 99999999999999631
Q ss_pred CCcEEEEecC
Q 001355 845 SGMIFVATST 854 (1093)
Q Consensus 845 ~naI~IlTSN 854 (1093)
.+++||++|+
T Consensus 148 ~~tvfIL~Tt 157 (605)
T PRK05896 148 KHVVFIFATT 157 (605)
T ss_pred CcEEEEEECC
Confidence 3577888776
No 88
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.93 E-value=1.4e-08 Score=116.64 Aligned_cols=146 Identities=19% Similarity=0.231 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
.+..+...+.+.++|+++++..+..++... .++||.||||+|||.+|+.+|+.+ +.+|+++.
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~---------------~~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~ 75 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALLAG---------------GHVLLEGPPGVGKTLLARALARAL---GLPFVRIQ 75 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHHcC---------------CCEEEECCCCccHHHHHHHHHHHh---CCCeEEEe
Confidence 455677777888999998877665554321 259999999999999999999998 47899999
Q ss_pred cCCccccCCCCccccCCCccccc--cccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCC
Q 001355 762 VSSEQRVSQPNSIFDCQNIDFCD--CKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYG 839 (1093)
Q Consensus 762 ~s~~~~~~~~~si~~~~~l~G~~--~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G 839 (1093)
|..... ...+.|...+.... .+.. .-.-+.+..+++ .|+|+|||.+ +++.+|+.|+++|++++++...
T Consensus 76 ~t~~l~---p~d~~G~~~~~~~~~~~~~~-~~~~gpl~~~~~----~ill~DEInr-a~p~~q~aLl~~l~e~~vtv~~- 145 (329)
T COG0714 76 CTPDLL---PSDLLGTYAYAALLLEPGEF-RFVPGPLFAAVR----VILLLDEINR-APPEVQNALLEALEERQVTVPG- 145 (329)
T ss_pred cCCCCC---HHHhcCchhHhhhhccCCeE-EEecCCcccccc----eEEEEecccc-CCHHHHHHHHHHHhCcEEEECC-
Confidence 985221 11111110000000 0000 000122333322 5999999999 9999999999999999988644
Q ss_pred eE-eecCC-cEEEEecCC
Q 001355 840 RD-VSISG-MIFVATSTI 855 (1093)
Q Consensus 840 ~~-V~l~n-aI~IlTSN~ 855 (1093)
.. +.+.. -++|+|+|-
T Consensus 146 ~~~~~~~~~f~viaT~Np 163 (329)
T COG0714 146 LTTIRLPPPFIVIATQNP 163 (329)
T ss_pred cCCcCCCCCCEEEEccCc
Confidence 33 55544 455666674
No 89
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=2.2e-08 Score=117.77 Aligned_cols=136 Identities=18% Similarity=0.182 Sum_probs=80.9
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc----eE---EeecC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK----LI---HVDVS 763 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~----fv---~id~s 763 (1093)
.+.|+||+.++..|...+...+. .-.+||+||+|+|||++|+++|+.+++.... +. .--|+
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~------------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~ 82 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRV------------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG 82 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCc------------ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC
Confidence 35789999999888777654321 1248999999999999999999999763210 00 00111
Q ss_pred Cc---cccCCCCccccCCCcccccc-ccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEe
Q 001355 764 SE---QRVSQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFT 835 (1093)
Q Consensus 764 ~~---~~~~~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~ 835 (1093)
.+ .......+ ..++-.+. +..+.+.+..+.+.+... ++.||||||+|+ ++...++.|++.|++..
T Consensus 83 ~c~~c~~~~~~~~----~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~-l~~~~~~~LLk~LEep~-- 155 (397)
T PRK14955 83 ECESCRDFDAGTS----LNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHM-LSIAAFNAFLKTLEEPP-- 155 (397)
T ss_pred CCHHHHHHhcCCC----CCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhh-CCHHHHHHHHHHHhcCC--
Confidence 11 00000000 01100000 112223333444555433 456999999999 99999999999998521
Q ss_pred cCCCeEeecCCcEEEEecC
Q 001355 836 DSYGRDVSISGMIFVATST 854 (1093)
Q Consensus 836 d~~G~~V~l~naI~IlTSN 854 (1093)
..++||++++
T Consensus 156 ---------~~t~~Il~t~ 165 (397)
T PRK14955 156 ---------PHAIFIFATT 165 (397)
T ss_pred ---------CCeEEEEEeC
Confidence 2456777665
No 90
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.92 E-value=2.9e-08 Score=118.94 Aligned_cols=98 Identities=20% Similarity=0.164 Sum_probs=64.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
.+||+||+|||||.+|++||..+ +.+|+.++++... .+++|... ..+..+....+....+|
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~-----------~~~vGese-----~~l~~~f~~A~~~~P~I 321 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLF-----------GGIVGESE-----SRMRQMIRIAEALSPCI 321 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhc-----------ccccChHH-----HHHHHHHHHHHhcCCcE
Confidence 49999999999999999999987 6789999987521 12333221 12344444445556699
Q ss_pred EEEcccccccC-----------HHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 808 VFLEDLDKAAD-----------PIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 808 I~LDEVDkiad-----------~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
|||||||++.. ..+...|+..|++. -.+++||+|||.
T Consensus 322 L~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-----------~~~V~vIaTTN~ 369 (489)
T CHL00195 322 LWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-----------KSPVFVVATANN 369 (489)
T ss_pred EEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-----------CCceEEEEecCC
Confidence 99999998321 12334455555431 135678888884
No 91
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.92 E-value=3.4e-08 Score=117.83 Aligned_cols=133 Identities=16% Similarity=0.148 Sum_probs=82.9
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc------eEEeecCCc
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK------LIHVDVSSE 765 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~------fv~id~s~~ 765 (1093)
..|+||+.++..+...+...+. .-.+||+||+|+|||.+|+.+|+.+++.... -.+.+|...
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i------------~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRA------------AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC------------ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 5789999999888877754321 1258999999999999999999999764211 011112111
Q ss_pred cccCCCCccccCCCccccccccccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeE
Q 001355 766 QRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRD 841 (1093)
Q Consensus 766 ~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~ 841 (1093)
......+ + ..+.|. ..+|...+..+.+.+.. ..+.||||||+|+ +....++.|+++||+-.
T Consensus 85 ~~~~~~d-~---~~i~g~--~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~-lt~~~~n~LLk~lEep~-------- 149 (451)
T PRK06305 85 SSGTSLD-V---LEIDGA--SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHM-LTKEAFNSLLKTLEEPP-------- 149 (451)
T ss_pred hcCCCCc-e---EEeecc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHh-hCHHHHHHHHHHhhcCC--------
Confidence 1000000 0 011111 12333333444444432 4577999999999 99999999999999621
Q ss_pred eecCCcEEEEecC
Q 001355 842 VSISGMIFVATST 854 (1093)
Q Consensus 842 V~l~naI~IlTSN 854 (1093)
.+++||++|+
T Consensus 150 ---~~~~~Il~t~ 159 (451)
T PRK06305 150 ---QHVKFFLATT 159 (451)
T ss_pred ---CCceEEEEeC
Confidence 2567888776
No 92
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=1.5e-08 Score=118.56 Aligned_cols=143 Identities=14% Similarity=0.112 Sum_probs=87.8
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc---cc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE---QR 767 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~---~~ 767 (1093)
.+.|+||+.++..+..++...+.+.....+ +..-.+||+||+|+|||.+|+++|+.+++.... ...|+.. ..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~---~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C~~C~~ 78 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGS---GMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGECRACRT 78 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCC---CCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCCHHHHH
Confidence 357899999999999999876532221111 112359999999999999999999988765321 0122211 00
Q ss_pred cCCCCccccCCCc--cccccccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeE
Q 001355 768 VSQPNSIFDCQNI--DFCDCKLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRD 841 (1093)
Q Consensus 768 ~~~~~si~~~~~l--~G~~~g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~ 841 (1093)
....+. +.+ +..+....+...+..+.+.+... ++.|+||||+|+ ++...+|.|++.||+..
T Consensus 79 ~~~~~h----pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~-m~~~aanaLLk~LEep~-------- 145 (394)
T PRK07940 79 VLAGTH----PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADR-LTERAANALLKAVEEPP-------- 145 (394)
T ss_pred HhcCCC----CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhh-cCHHHHHHHHHHhhcCC--------
Confidence 000000 111 11111112223344455554443 446999999999 99999999999999631
Q ss_pred eecCCcEEEEecC
Q 001355 842 VSISGMIFVATST 854 (1093)
Q Consensus 842 V~l~naI~IlTSN 854 (1093)
.+++||++|+
T Consensus 146 ---~~~~fIL~a~ 155 (394)
T PRK07940 146 ---PRTVWLLCAP 155 (394)
T ss_pred ---CCCeEEEEEC
Confidence 3466777766
No 93
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.91 E-value=2.6e-09 Score=107.20 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=81.2
Q ss_pred CccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCcc
Q 001355 695 GWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSI 774 (1093)
Q Consensus 695 iGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si 774 (1093)
+|...++..+...+.+... ...+++++|++|+||+.+|++|+........+|+.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~-----------~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK-----------SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC-----------SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC--------
T ss_pred CCCCHHHHHHHHHHHHHhC-----------CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc--------
Confidence 5788888888888887753 224799999999999999999999877767788877777421
Q ss_pred ccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecC
Q 001355 775 FDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATST 854 (1093)
Q Consensus 775 ~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN 854 (1093)
.+.+.....++|||+|||. +++..|..|+++|+... -.+..+|+||+
T Consensus 62 ----------------------~~~l~~a~~gtL~l~~i~~-L~~~~Q~~L~~~l~~~~----------~~~~RlI~ss~ 108 (138)
T PF14532_consen 62 ----------------------AELLEQAKGGTLYLKNIDR-LSPEAQRRLLDLLKRQE----------RSNVRLIASSS 108 (138)
T ss_dssp ----------------------HHHHHHCTTSEEEEECGCC-S-HHHHHHHHHHHHHCT----------TTTSEEEEEEC
T ss_pred ----------------------HHHHHHcCCCEEEECChHH-CCHHHHHHHHHHHHhcC----------CCCeEEEEEeC
Confidence 1122234678999999999 99999999999998632 13567899887
Q ss_pred C
Q 001355 855 I 855 (1093)
Q Consensus 855 ~ 855 (1093)
.
T Consensus 109 ~ 109 (138)
T PF14532_consen 109 Q 109 (138)
T ss_dssp C
T ss_pred C
Confidence 4
No 94
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.90 E-value=5.4e-08 Score=110.66 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=76.9
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..++||++++..+...+... . ....++|+||+|+|||++|+++++.+ ...++.++++. .. .
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~---~---------~~~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~~~-~~-~-- 81 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG---R---------IPNMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNGSD-CR-I-- 81 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC---C---------CCeEEEeeCcCCCCHHHHHHHHHHHh---CccceEeccCc-cc-H--
Confidence 45799999988877776521 1 11357789999999999999999987 34566777653 10 0
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHh----CCceEEEEccccccc-CHHHHHHHhhhhcCCeEecCCCeEeecCC
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAA-DPIVQSSLTKAISTGKFTDSYGRDVSISG 846 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkia-d~~vq~~Ll~aLe~Gr~~d~~G~~V~l~n 846 (1093)
. ...+.+.+.... ..+.||||||+|. + ....+..|...+++.. ++
T Consensus 82 --------------~----~i~~~l~~~~~~~~~~~~~~vliiDe~d~-l~~~~~~~~L~~~le~~~-----------~~ 131 (316)
T PHA02544 82 --------------D----FVRNRLTRFASTVSLTGGGKVIIIDEFDR-LGLADAQRHLRSFMEAYS-----------KN 131 (316)
T ss_pred --------------H----HHHHHHHHHHHhhcccCCCeEEEEECccc-ccCHHHHHHHHHHHHhcC-----------CC
Confidence 0 000111111111 3467999999999 7 7778888888888521 35
Q ss_pred cEEEEecCC
Q 001355 847 MIFVATSTI 855 (1093)
Q Consensus 847 aI~IlTSN~ 855 (1093)
++||+|||.
T Consensus 132 ~~~Ilt~n~ 140 (316)
T PHA02544 132 CSFIITANN 140 (316)
T ss_pred ceEEEEcCC
Confidence 678999883
No 95
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=4.8e-08 Score=117.42 Aligned_cols=134 Identities=21% Similarity=0.239 Sum_probs=83.1
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCce-----EEeecCCc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKL-----IHVDVSSE 765 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~f-----v~id~s~~ 765 (1093)
...++||+.++..+..++...+. .-.+||+||+|+|||++|+.+|+.+++..... .+.+|...
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i------------~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRV------------SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 35689999999888877754321 12489999999999999999999987532111 11122111
Q ss_pred cccCCCCccccCCCccccccccccchhhhHHHHHHHhCC----ceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeE
Q 001355 766 QRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKP----YSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRD 841 (1093)
Q Consensus 766 ~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p----~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~ 841 (1093)
......+ +. .+.+. .-+|.+..+.+.+.+...| +.|++|||++. ++...++.|++.|++.
T Consensus 83 ~~g~~~d-~~---eidaa--s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~-Lt~~a~naLLk~LEep--------- 146 (486)
T PRK14953 83 DKGSFPD-LI---EIDAA--SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHM-LTKEAFNALLKTLEEP--------- 146 (486)
T ss_pred hcCCCCc-EE---EEeCc--cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhh-cCHHHHHHHHHHHhcC---------
Confidence 1100000 00 00010 1133343455666665544 45999999999 9999999999999863
Q ss_pred eecCCcEEEEecC
Q 001355 842 VSISGMIFVATST 854 (1093)
Q Consensus 842 V~l~naI~IlTSN 854 (1093)
-..++||++|+
T Consensus 147 --p~~~v~Il~tt 157 (486)
T PRK14953 147 --PPRTIFILCTT 157 (486)
T ss_pred --CCCeEEEEEEC
Confidence 12456777665
No 96
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=4e-08 Score=120.67 Aligned_cols=136 Identities=18% Similarity=0.182 Sum_probs=82.3
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCC---c-eE---EeecC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKG---K-LI---HVDVS 763 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~---~-fv---~id~s 763 (1093)
.+.|+||+.++..|..++...+. .-.+||+||+|+|||++|+.||+.+++... + +. .--|+
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri------------~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg 82 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRV------------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG 82 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC------------CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc
Confidence 46789999999988777654322 124899999999999999999999976321 0 00 00122
Q ss_pred Cc---cccCCCCccccCCCcccccc-ccccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEe
Q 001355 764 SE---QRVSQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFT 835 (1093)
Q Consensus 764 ~~---~~~~~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~ 835 (1093)
.+ ......++ ..++-.+. ...+.+.+..+.+.+.. .++.||+|||+|+ ++...++.|+++||+-
T Consensus 83 ~C~sC~~~~~g~~----~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~-Lt~~a~naLLK~LEeP--- 154 (620)
T PRK14954 83 ECESCRDFDAGTS----LNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHM-LSTAAFNAFLKTLEEP--- 154 (620)
T ss_pred cCHHHHHHhccCC----CCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhh-cCHHHHHHHHHHHhCC---
Confidence 11 00000000 11110000 11222334444444433 3456999999999 9999999999999962
Q ss_pred cCCCeEeecCCcEEEEecC
Q 001355 836 DSYGRDVSISGMIFVATST 854 (1093)
Q Consensus 836 d~~G~~V~l~naI~IlTSN 854 (1093)
-..++||++++
T Consensus 155 --------p~~tv~IL~t~ 165 (620)
T PRK14954 155 --------PPHAIFIFATT 165 (620)
T ss_pred --------CCCeEEEEEeC
Confidence 13567888765
No 97
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.88 E-value=6e-08 Score=105.21 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=57.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
+++|+||+|+|||++|+++++..+.....++++++..... .+ .. .....+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~---------------------------~~-~~--~~~~~~ 93 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL---------------------------AF-DF--DPEAEL 93 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH---------------------------HH-hh--cccCCE
Confidence 6999999999999999999999877777888888764210 00 00 112469
Q ss_pred EEEcccccccCHHHHHHHhhhhcC
Q 001355 808 VFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 808 I~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
|+|||+|. ++...|..|..+++.
T Consensus 94 liiDdi~~-l~~~~~~~L~~~~~~ 116 (227)
T PRK08903 94 YAVDDVER-LDDAQQIALFNLFNR 116 (227)
T ss_pred EEEeChhh-cCchHHHHHHHHHHH
Confidence 99999999 998899999998864
No 98
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.88 E-value=2.4e-08 Score=117.12 Aligned_cols=131 Identities=22% Similarity=0.195 Sum_probs=82.0
Q ss_pred cccCccHHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 692 EKVGWQDEAICTISQAVSRWR--------IGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~r--------sg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..|.|.+.++..|..+|.... .|... +..+||+||+|||||.+|+++|..+ ...|+.+..+
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~--------pkgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDP--------PRGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGS 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCC--------CceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehH
Confidence 357888888888888876432 12221 2358999999999999999999976 5567777654
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc----------CHHHHHHHhhhhcCCe
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA----------DPIVQSSLTKAISTGK 833 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia----------d~~vq~~Ll~aLe~Gr 833 (1093)
... ..+.|... ..+..+....+.+..+||||||||.|+ +..++..+.+++..-.
T Consensus 214 ~l~-----------~k~~ge~~-----~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld 277 (398)
T PTZ00454 214 EFV-----------QKYLGEGP-----RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMD 277 (398)
T ss_pred HHH-----------HHhcchhH-----HHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhh
Confidence 321 12222211 223444455555556899999999732 3456666666664321
Q ss_pred EecCCCeEeecCCcEEEEecCC
Q 001355 834 FTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 834 ~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
-.+ ...+++||+|||.
T Consensus 278 ~~~------~~~~v~VI~aTN~ 293 (398)
T PTZ00454 278 GFD------QTTNVKVIMATNR 293 (398)
T ss_pred ccC------CCCCEEEEEecCC
Confidence 111 1135678888884
No 99
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=6.7e-08 Score=116.50 Aligned_cols=132 Identities=16% Similarity=0.165 Sum_probs=81.2
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc-----eEEeecCCcc
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK-----LIHVDVSSEQ 766 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~-----fv~id~s~~~ 766 (1093)
..|+||+.++..+...+...+. .-.+||+||+|+|||.+|+++|+.+++.... ..+-.|....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl------------~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRL------------AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCC------------CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 4689999999888887753321 1247999999999999999999998754321 1111121111
Q ss_pred ccCCCCccccCCCcc-ccccccccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeE
Q 001355 767 RVSQPNSIFDCQNID-FCDCKLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRD 841 (1093)
Q Consensus 767 ~~~~~~si~~~~~l~-G~~~g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~ 841 (1093)
.... ..++ +.....+|...+..+.+.... .++.|++|||+|. ++.+.++.|++.||+-
T Consensus 82 ~~~h-------~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~-Lt~~A~NALLK~LEEp--------- 144 (535)
T PRK08451 82 ENRH-------IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHM-LTKEAFNALLKTLEEP--------- 144 (535)
T ss_pred hcCC-------CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECccc-CCHHHHHHHHHHHhhc---------
Confidence 1000 0000 000001222223333332222 3457999999999 9999999999999962
Q ss_pred eecCCcEEEEecC
Q 001355 842 VSISGMIFVATST 854 (1093)
Q Consensus 842 V~l~naI~IlTSN 854 (1093)
-.+++||++|+
T Consensus 145 --p~~t~FIL~tt 155 (535)
T PRK08451 145 --PSYVKFILATT 155 (535)
T ss_pred --CCceEEEEEEC
Confidence 13567888876
No 100
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.87 E-value=7.8e-08 Score=110.88 Aligned_cols=135 Identities=19% Similarity=0.223 Sum_probs=81.1
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc---cc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE---QR 767 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~---~~ 767 (1093)
.+.++||++++..+...+...+. .-.+||+||+|+|||.+|+++++.+.+....-. -.|+.+ ..
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~------------~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~-~~c~~c~~c~~ 79 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRI------------AHAYLFSGPRGTGKTSIARIFAKALNCQNGPDG-EPCNECESCKE 79 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-CCCCCCHHHHH
Confidence 35689999999988887753211 125899999999999999999999875422100 011110 00
Q ss_pred cCCCCccccCCCcccccc-ccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 768 VSQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 768 ~~~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
...... ..++..+. +..+......+.+.+... ++.||+|||+|. ++...++.|++.+++.
T Consensus 80 ~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~-l~~~~~~~Ll~~le~~---------- 144 (355)
T TIGR02397 80 INSGSS----LDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHM-LSKSAFNALLKTLEEP---------- 144 (355)
T ss_pred HhcCCC----CCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhh-cCHHHHHHHHHHHhCC----------
Confidence 000000 01100000 111222233454544443 346999999999 9999999999999852
Q ss_pred ecCCcEEEEecC
Q 001355 843 SISGMIFVATST 854 (1093)
Q Consensus 843 ~l~naI~IlTSN 854 (1093)
..+++||++++
T Consensus 145 -~~~~~lIl~~~ 155 (355)
T TIGR02397 145 -PEHVVFILATT 155 (355)
T ss_pred -ccceeEEEEeC
Confidence 13567888776
No 101
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.87 E-value=1.8e-08 Score=124.89 Aligned_cols=137 Identities=10% Similarity=0.057 Sum_probs=82.8
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhc----------c---------
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVF----------G--------- 752 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lf----------g--------- 752 (1093)
..|+||++++.++.-++... ....+||.|++|+|||.+|++|+..+- .
T Consensus 4 ~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~ 70 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEW 70 (633)
T ss_pred chhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcccc
Confidence 46899999886665433211 113599999999999999999999882 1
Q ss_pred -------------CCCceEEeecCCccccCCCCccccCCCccccccc---c-ccchhhhHHHHHHHhCCceEEEEccccc
Q 001355 753 -------------NKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCK---L-RGKVLVDYIYQEFRSKPYSVVFLEDLDK 815 (1093)
Q Consensus 753 -------------s~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g---~-~g~~~~~~l~eal~~~p~~VI~LDEVDk 815 (1093)
...+|+.+.++... ..++|..+- . .|... .-.+.+....++|||||||++
T Consensus 71 ~~~~~~~~~~~~~~~~pfv~~p~~~t~-----------~~l~G~~d~~~~l~~g~~~--~~~G~L~~A~~GiL~lDEi~~ 137 (633)
T TIGR02442 71 CEECRRKYRPSEQRPVPFVNLPLGATE-----------DRVVGSLDIERALREGEKA--FQPGLLAEAHRGILYIDEVNL 137 (633)
T ss_pred ChhhhhcccccccCCCCeeeCCCCCcH-----------HHcCCcccHHHHhhcCCee--ecCcceeecCCCeEEeChhhh
Confidence 11233333322110 122232100 0 00000 002233345667999999999
Q ss_pred ccCHHHHHHHhhhhcCCeEe--cCCCeEeecCCcEEEEecCC
Q 001355 816 AADPIVQSSLTKAISTGKFT--DSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 816 iad~~vq~~Ll~aLe~Gr~~--d~~G~~V~l~naI~IlTSN~ 855 (1093)
+++.+|+.|+++|++|.+. ..+.....-.+.++|+|+|.
T Consensus 138 -l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np 178 (633)
T TIGR02442 138 -LDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNP 178 (633)
T ss_pred -CCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCC
Confidence 9999999999999999643 22222222246778888884
No 102
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=7.6e-09 Score=110.53 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=78.0
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEE
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVV 808 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI 808 (1093)
+|++||+|||||++|+++|..- ...||++..+.+- ++|.|.-+ ..+..++...+++..+||
T Consensus 192 vllygppg~gktml~kava~~t---~a~firvvgsefv-----------qkylgegp-----rmvrdvfrlakenapsii 252 (408)
T KOG0727|consen 192 VLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFV-----------QKYLGEGP-----RMVRDVFRLAKENAPSII 252 (408)
T ss_pred eEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHH-----------HHHhccCc-----HHHHHHHHHHhccCCcEE
Confidence 8999999999999999999876 6789999887642 34555433 344566677778888999
Q ss_pred EEccccccc----------CHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 809 FLEDLDKAA----------DPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 809 ~LDEVDkia----------d~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
||||||.|+ |.++|..|++++....-.|.. .|+-+|++||.
T Consensus 253 fideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~------~nvkvimatnr 303 (408)
T KOG0727|consen 253 FIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT------TNVKVIMATNR 303 (408)
T ss_pred EeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc------cceEEEEecCc
Confidence 999999654 689999999999764333322 35669999996
No 103
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.85 E-value=4.8e-09 Score=104.75 Aligned_cols=115 Identities=17% Similarity=0.316 Sum_probs=71.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
+++|+||+|+|||.+|+.||+.+ ..+++.+.+....+. ..+.+..........|.- +.+..+++ ...|
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~---~dl~g~~~~~~~~~~~~~----~~l~~a~~--~~~i 68 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTE---EDLIGSYDPSNGQFEFKD----GPLVRAMR--KGGI 68 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTH---HHHHCEEET-TTTTCEEE-----CCCTTHH--EEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEecccccc---ccceeeeeeccccccccc----cccccccc--ceeE
Confidence 48999999999999999999998 678888888763211 111111000000000100 12222222 3579
Q ss_pred EEEcccccccCHHHHHHHhhhhcCCeEecCCC-eEeecC-------CcEEEEecCC
Q 001355 808 VFLEDLDKAADPIVQSSLTKAISTGKFTDSYG-RDVSIS-------GMIFVATSTI 855 (1093)
Q Consensus 808 I~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G-~~V~l~-------naI~IlTSN~ 855 (1093)
+|||||++ +++.++..|+.+++++++....+ ..+... +.+||+|+|.
T Consensus 69 l~lDEin~-a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~ 123 (139)
T PF07728_consen 69 LVLDEINR-APPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNP 123 (139)
T ss_dssp EEESSCGG---HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESS
T ss_pred EEECCccc-CCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcC
Confidence 99999999 99999999999999998874433 333333 3789999996
No 104
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.85 E-value=3.1e-08 Score=125.13 Aligned_cols=137 Identities=18% Similarity=0.223 Sum_probs=86.5
Q ss_pred CCchhhHHHHHHHhh---cccc-------cCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechh
Q 001355 209 DDVDENCRRIGEVLA---GRDE-------KKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEI 275 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~---R~~~-------~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~ 275 (1093)
+|.++.+.++.+.+. +.++ ...++.+|.|.+|.| .++.++... +..++.+. .
T Consensus 181 ~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~-------------~~~~i~i~--~ 245 (733)
T TIGR01243 181 GGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA-------------GAYFISIN--G 245 (733)
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh-------------CCeEEEEe--c
Confidence 467777666666553 2111 124688999999998 355555442 34566666 4
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCc--chHHHHHHHHHHhhhcC-CCCCcEEEEEec
Q 001355 276 NEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVS--TEAARFVVSQLTSLLKS-GNGEKLWLIGAA 352 (1093)
Q Consensus 276 ~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~--~~~~~~~v~el~~Ll~~-~~~g~lwliG~a 352 (1093)
..++ ..+.++.+.++.++-..... ..+.||||||+.-+...... .+.-..++..|-.++.. ..++++-+||++
T Consensus 246 ~~i~--~~~~g~~~~~l~~lf~~a~~--~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~at 321 (733)
T TIGR01243 246 PEIM--SKYYGESEERLREIFKEAEE--NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGAT 321 (733)
T ss_pred HHHh--cccccHHHHHHHHHHHHHHh--cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeec
Confidence 4443 34567888899888877664 45679999999998875432 22234566777777753 235789999983
Q ss_pred ccHHHHHhhhhcCCCCCC
Q 001355 353 MSYETYLKMLAKFPGLDN 370 (1093)
Q Consensus 353 ~T~~tY~k~~~~~PslE~ 370 (1093)
+.-.+ -+|++-+
T Consensus 322 -n~~~~-----ld~al~r 333 (733)
T TIGR01243 322 -NRPDA-----LDPALRR 333 (733)
T ss_pred -CChhh-----cCHHHhC
Confidence 54332 2555544
No 105
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.84 E-value=3.8e-08 Score=118.06 Aligned_cols=52 Identities=27% Similarity=0.211 Sum_probs=39.4
Q ss_pred cccCccHHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 692 EKVGWQDEAICTISQAVSRWR--------IGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~r--------sg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
..|.|.+..+..|...|.... .|+..+ .-+||+||||||||.+|+++|..+.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p--------~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPP--------KGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCC--------cceEEECCCCCcHHHHHHHHHHhhc
Confidence 457889999999988876421 122222 2489999999999999999999873
No 106
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=9.6e-08 Score=117.75 Aligned_cols=137 Identities=17% Similarity=0.198 Sum_probs=82.1
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc---eEEeecCCccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK---LIHVDVSSEQR 767 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~---fv~id~s~~~~ 767 (1093)
.+.|+||++++..|...+...+. .-.+||+||+|+|||.+|+.+|+.+.+.... ..+-.|..+..
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l------------~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~ 83 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKL------------AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVA 83 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC------------CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHH
Confidence 45799999999988888764321 1258999999999999999999998643210 01111111000
Q ss_pred cCCCCccccCCCccccccccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEee
Q 001355 768 VSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVS 843 (1093)
Q Consensus 768 ~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~ 843 (1093)
+....+. ....+.+. +..+.+.+..+.+.++.. .+.||+|||+|. ++...++.|+++||+-
T Consensus 84 ~~~~~~~-n~~~ld~~--~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~-Ls~~a~naLLK~LEep----------- 148 (614)
T PRK14971 84 FNEQRSY-NIHELDAA--SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHM-LSQAAFNAFLKTLEEP----------- 148 (614)
T ss_pred HhcCCCC-ceEEeccc--ccCCHHHHHHHHHHHhhCcccCCcEEEEEECccc-CCHHHHHHHHHHHhCC-----------
Confidence 0000000 00011111 111222233333333433 356999999999 9999999999999962
Q ss_pred cCCcEEEEecC
Q 001355 844 ISGMIFVATST 854 (1093)
Q Consensus 844 l~naI~IlTSN 854 (1093)
-.+++||++|+
T Consensus 149 p~~tifIL~tt 159 (614)
T PRK14971 149 PSYAIFILATT 159 (614)
T ss_pred CCCeEEEEEeC
Confidence 13577888876
No 107
>PRK04195 replication factor C large subunit; Provisional
Probab=98.83 E-value=7.7e-08 Score=116.00 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=77.7
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPN 772 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~ 772 (1093)
.++||++++..+...+.....|.. .-.+||+||+|+|||++|++||+.+ .-.++.++.+....
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~---------~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~r~----- 77 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKP---------KKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRT----- 77 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCC---------CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEccccccc-----
Confidence 479999999999998877653221 1269999999999999999999987 34567777654211
Q ss_pred ccccCCCccccccccccchhhhHHH-HHHH-----hCCceEEEEcccccccCH----HHHHHHhhhhcCCeEecCCCeEe
Q 001355 773 SIFDCQNIDFCDCKLRGKVLVDYIY-QEFR-----SKPYSVVFLEDLDKAADP----IVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 773 si~~~~~l~G~~~g~~g~~~~~~l~-eal~-----~~p~~VI~LDEVDkiad~----~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
...+..+. .+.. ..++.||+|||+|. +.. ..+..|+++++..
T Consensus 78 -----------------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~-L~~~~d~~~~~aL~~~l~~~---------- 129 (482)
T PRK04195 78 -----------------ADVIERVAGEAATSGSLFGARRKLILLDEVDG-IHGNEDRGGARAILELIKKA---------- 129 (482)
T ss_pred -----------------HHHHHHHHHHhhccCcccCCCCeEEEEecCcc-cccccchhHHHHHHHHHHcC----------
Confidence 00011111 1111 12467999999998 754 6778888888742
Q ss_pred ecCCcEEEEecCC
Q 001355 843 SISGMIFVATSTI 855 (1093)
Q Consensus 843 ~l~naI~IlTSN~ 855 (1093)
+..||++||.
T Consensus 130 ---~~~iIli~n~ 139 (482)
T PRK04195 130 ---KQPIILTAND 139 (482)
T ss_pred ---CCCEEEeccC
Confidence 2336777874
No 108
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.83 E-value=6.5e-08 Score=104.31 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=56.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
.+++|+||+|||||++|+++++.......++++++|....... ..+.+.+.. ..
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~------------------------~~~~~~~~~--~~ 92 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD------------------------PEVLEGLEQ--AD 92 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH------------------------HHHHhhccc--CC
Confidence 3799999999999999999999887666778888887642100 112222222 35
Q ss_pred EEEEcccccccCH--HHHHHHhhhhcC
Q 001355 807 VVFLEDLDKAADP--IVQSSLTKAIST 831 (1093)
Q Consensus 807 VI~LDEVDkiad~--~vq~~Ll~aLe~ 831 (1093)
+|+|||++. ++. ..+..|..+++.
T Consensus 93 lLvIDdi~~-l~~~~~~~~~L~~~l~~ 118 (226)
T TIGR03420 93 LVCLDDVEA-IAGQPEWQEALFHLYNR 118 (226)
T ss_pred EEEEeChhh-hcCChHHHHHHHHHHHH
Confidence 999999999 876 448888888764
No 109
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.83 E-value=2.9e-08 Score=115.41 Aligned_cols=137 Identities=24% Similarity=0.234 Sum_probs=82.1
Q ss_pred cccCccHHHHHHHHHHHHHHHhcC--CCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGN--GRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVS 769 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~--~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~ 769 (1093)
+.|.|.++++..|.+++....... ...-+ -..+..+||+||+|||||++|+++|..+ ...|+.+..+...
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g--~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~~~l~--- 193 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVG--IEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELV--- 193 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcC--CCCCceEEEECCCCCCHHHHHHHHHHhC---CCCEEecchHHHH---
Confidence 367999999999988886432110 00000 0111248999999999999999999987 4567766544311
Q ss_pred CCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc----------CHHHHHHHhhhhcCCeEecCCC
Q 001355 770 QPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA----------DPIVQSSLTKAISTGKFTDSYG 839 (1093)
Q Consensus 770 ~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia----------d~~vq~~Ll~aLe~Gr~~d~~G 839 (1093)
..++|... .....+....+....+||||||||.+. ++.++..|.+++..-.-.+
T Consensus 194 --------~~~~g~~~-----~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~--- 257 (364)
T TIGR01242 194 --------RKYIGEGA-----RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD--- 257 (364)
T ss_pred --------HHhhhHHH-----HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC---
Confidence 11222111 122334444444455799999999832 4567777777775311011
Q ss_pred eEeecCCcEEEEecCC
Q 001355 840 RDVSISGMIFVATSTI 855 (1093)
Q Consensus 840 ~~V~l~naI~IlTSN~ 855 (1093)
...+++||+|||.
T Consensus 258 ---~~~~v~vI~ttn~ 270 (364)
T TIGR01242 258 ---PRGNVKVIAATNR 270 (364)
T ss_pred ---CCCCEEEEEecCC
Confidence 1236778999984
No 110
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=9.7e-08 Score=116.53 Aligned_cols=137 Identities=23% Similarity=0.253 Sum_probs=81.4
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc--eEEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK--LIHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--fv~id~s~~~~~ 768 (1093)
.+.|+||+.++..+...+...+. .-.+||+||+|+|||.+|++||+.+.+...+ ..+..|......
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i------------~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i 82 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKI------------ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSI 82 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHH
Confidence 35789999999988887764321 1259999999999999999999999764221 111112111000
Q ss_pred CCCCccccCCCccccccccccchhhhHHHHHHH----hCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeec
Q 001355 769 SQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR----SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSI 844 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~----~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l 844 (1093)
....+. +...+.|.. ..+...+..+.+.+. ..++.|++|||++. ++...++.|++.+|+. -
T Consensus 83 ~~~~~~-dv~~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~-Ls~~a~naLLK~LEep-----------p 147 (563)
T PRK06647 83 DNDNSL-DVIEIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHM-LSNSAFNALLKTIEEP-----------P 147 (563)
T ss_pred HcCCCC-CeEEecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhh-cCHHHHHHHHHhhccC-----------C
Confidence 000000 000011110 011112222322223 24566999999999 9999999999999952 1
Q ss_pred CCcEEEEecC
Q 001355 845 SGMIFVATST 854 (1093)
Q Consensus 845 ~naI~IlTSN 854 (1093)
..++||++|+
T Consensus 148 ~~~vfI~~tt 157 (563)
T PRK06647 148 PYIVFIFATT 157 (563)
T ss_pred CCEEEEEecC
Confidence 3677888775
No 111
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.1e-07 Score=117.08 Aligned_cols=136 Identities=17% Similarity=0.179 Sum_probs=81.9
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc--e-EEeecCCccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK--L-IHVDVSSEQR 767 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--f-v~id~s~~~~ 767 (1093)
.+.|+||+.++..|..++...+. .-.+||+||+|+|||.+|+.+|+.+.+.... . .+-.|..+..
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i------------~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~ 82 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRV------------AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA 82 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCC------------ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence 35789999999888777764321 1247999999999999999999998643210 0 0011111100
Q ss_pred cCCCCccccCCCcccccc-ccccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 768 VSQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 768 ~~~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
.....+ ..++..+. ..++.+.+..+.+.+.. ..+.||||||+|+ ++...++.|+++|++-.
T Consensus 83 i~~~~~----~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~-L~~~a~naLLk~LEepp--------- 148 (585)
T PRK14950 83 IAEGSA----VDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHM-LSTAAFNALLKTLEEPP--------- 148 (585)
T ss_pred HhcCCC----CeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHh-CCHHHHHHHHHHHhcCC---------
Confidence 000000 11110011 11222333344444443 3456999999999 99999999999999631
Q ss_pred ecCCcEEEEecC
Q 001355 843 SISGMIFVATST 854 (1093)
Q Consensus 843 ~l~naI~IlTSN 854 (1093)
.+++||++++
T Consensus 149 --~~tv~Il~t~ 158 (585)
T PRK14950 149 --PHAIFILATT 158 (585)
T ss_pred --CCeEEEEEeC
Confidence 3567888775
No 112
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.3e-07 Score=116.57 Aligned_cols=135 Identities=16% Similarity=0.165 Sum_probs=82.5
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc-eEEeecCCc---cc
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK-LIHVDVSSE---QR 767 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~-fv~id~s~~---~~ 767 (1093)
..++||++++..|..++...+. + -.+||+||+|+|||.+|+++|+.+++.... ...-.|+.+ ..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl-------~-----~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRI-------A-----PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCC-------C-----ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 5689999999888887764321 0 148999999999999999999999764211 000112211 00
Q ss_pred cCCCCccccCCCcccccc-ccccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 768 VSQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 768 ~~~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
.....+ ..++..+. ...+...++.+.+.+.. ..+.||||||+|+ ++...++.|++.||+-
T Consensus 84 i~~g~h----~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~-Lt~~a~naLLK~LEeP---------- 148 (620)
T PRK14948 84 IAAGNA----LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHM-LSTAAFNALLKTLEEP---------- 148 (620)
T ss_pred HhcCCC----ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccc-cCHHHHHHHHHHHhcC----------
Confidence 000000 11111111 01222233334343332 3467999999999 9999999999999952
Q ss_pred ecCCcEEEEecC
Q 001355 843 SISGMIFVATST 854 (1093)
Q Consensus 843 ~l~naI~IlTSN 854 (1093)
-.+++||++|+
T Consensus 149 -p~~tvfIL~t~ 159 (620)
T PRK14948 149 -PPRVVFVLATT 159 (620)
T ss_pred -CcCeEEEEEeC
Confidence 13577888776
No 113
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.80 E-value=8e-08 Score=115.60 Aligned_cols=146 Identities=18% Similarity=0.152 Sum_probs=85.3
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCC-
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQ- 770 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~- 770 (1093)
..|+||..++..+..++. .+-.++|.||+|+|||++|+.|+..+...... +.++.........
T Consensus 192 ~dv~Gq~~~~~al~~aa~---------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~-~~le~~~i~s~~g~ 255 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAA---------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNE-EAIETARIWSLVGK 255 (499)
T ss_pred HHhcCcHHHHhhhhhhcc---------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCc-EEEeccccccchhh
Confidence 458999988766554431 11269999999999999999999877543221 2233322110000
Q ss_pred ---CCccccC----CCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEec--CCCeE
Q 001355 771 ---PNSIFDC----QNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTD--SYGRD 841 (1093)
Q Consensus 771 ---~~si~~~----~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d--~~G~~ 841 (1093)
...+... +..........|... ..-.+.+....++|+|||||++ +++.+|..|++.||+|.++. .++..
T Consensus 256 ~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~-~~~pG~i~lA~~GvLfLDEi~e-~~~~~~~~L~~~LE~~~v~i~r~g~~~ 333 (499)
T TIGR00368 256 LIDRKQIKQRPFRSPHHSASKPALVGGGP-IPLPGEISLAHNGVLFLDELPE-FKRSVLDALREPIEDGSISISRASAKI 333 (499)
T ss_pred hccccccccCCccccccccchhhhhCCcc-ccchhhhhccCCCeEecCChhh-CCHHHHHHHHHHHHcCcEEEEecCcce
Confidence 0000000 000000011111000 0112345566778999999999 99999999999999998753 22333
Q ss_pred eecCCcEEEEecCC
Q 001355 842 VSISGMIFVATSTI 855 (1093)
Q Consensus 842 V~l~naI~IlTSN~ 855 (1093)
..-.+..+|+++|.
T Consensus 334 ~~pa~frlIaa~Np 347 (499)
T TIGR00368 334 FYPARFQLVAAMNP 347 (499)
T ss_pred eccCCeEEEEecCC
Confidence 33357789999995
No 114
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.79 E-value=4.1e-08 Score=120.65 Aligned_cols=146 Identities=11% Similarity=0.128 Sum_probs=87.7
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC-------CCceEEeecC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN-------KGKLIHVDVS 763 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs-------~~~fv~id~s 763 (1093)
-+.++|+++-+..|+..|..+..+.. + ...|+++|+||||||.+++.+.+.+-.. .-.+++|||.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsg----p----nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSG----S----NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCC----C----CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 46899999999999999988876422 1 1257799999999999999887765321 1346889986
Q ss_pred CccccCCCC-ccccCCCcccccc--ccccchhhhHHHHHHHh--CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCC
Q 001355 764 SEQRVSQPN-SIFDCQNIDFCDC--KLRGKVLVDYIYQEFRS--KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY 838 (1093)
Q Consensus 764 ~~~~~~~~~-si~~~~~l~G~~~--g~~g~~~~~~l~eal~~--~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~ 838 (1093)
........- .+. ..+++..+ |+.....++.++..+.+ ....||+|||||. +....|..|+.+++--... .
T Consensus 826 ~Lstp~sIYqvI~--qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~-L~kK~QDVLYnLFR~~~~s--~ 900 (1164)
T PTZ00112 826 NVVHPNAAYQVLY--KQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDY-LITKTQKVLFTLFDWPTKI--N 900 (1164)
T ss_pred ccCCHHHHHHHHH--HHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhh-hCccHHHHHHHHHHHhhcc--C
Confidence 522111000 000 11212211 11112334455554422 2235899999999 6555677888887742211 1
Q ss_pred CeEeecCCcEEEEecCC
Q 001355 839 GRDVSISGMIFVATSTI 855 (1093)
Q Consensus 839 G~~V~l~naI~IlTSN~ 855 (1093)
...+||+.+|.
T Consensus 901 ------SKLiLIGISNd 911 (1164)
T PTZ00112 901 ------SKLVLIAISNT 911 (1164)
T ss_pred ------CeEEEEEecCc
Confidence 24668888873
No 115
>PRK06893 DNA replication initiation factor; Validated
Probab=98.78 E-value=1.4e-07 Score=102.91 Aligned_cols=63 Identities=13% Similarity=0.041 Sum_probs=43.9
Q ss_pred HHHhhccc--cccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 001355 976 EDFFDQTD--AIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENVV 1049 (1093)
Q Consensus 976 ~efl~rId--~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~vl 1049 (1093)
+++..|+- .++.++|++.++..+++.+.... . .+.++++++++|+...- ++ -|.+...++.+.
T Consensus 144 ~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~-------~--~l~l~~~v~~~L~~~~~-~d-~r~l~~~l~~l~ 208 (229)
T PRK06893 144 PDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ-------R--GIELSDEVANFLLKRLD-RD-MHTLFDALDLLD 208 (229)
T ss_pred hhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHhcc-CC-HHHHHHHHHHHH
Confidence 34444443 46789999999999998776543 1 27899999999998733 23 345666676653
No 116
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.78 E-value=2e-07 Score=105.70 Aligned_cols=116 Identities=22% Similarity=0.362 Sum_probs=75.9
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCC--ceEEeecCCccccCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKG--KLIHVDVSSEQRVSQ 770 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~--~fv~id~s~~~~~~~ 770 (1093)
.++||++++..+...+.... . ..++|+||+|+|||.+++++++.+++... .++.++.+...
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~----~---------~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~---- 80 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKN----M---------PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER---- 80 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCC----C---------CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc----
Confidence 36799998888777764210 0 14799999999999999999999876543 23333322110
Q ss_pred CCccccCCCccccccccccch-hhhHHHHHHHh-----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeec
Q 001355 771 PNSIFDCQNIDFCDCKLRGKV-LVDYIYQEFRS-----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSI 844 (1093)
Q Consensus 771 ~~si~~~~~l~G~~~g~~g~~-~~~~l~eal~~-----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l 844 (1093)
+.. ..+.+.+.... .+..||+|||+|. +....++.|+++++...
T Consensus 81 ------------------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~-l~~~~~~~L~~~le~~~----------- 130 (319)
T PRK00440 81 ------------------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADN-LTSDAQQALRRTMEMYS----------- 130 (319)
T ss_pred ------------------chHHHHHHHHHHHhcCCCCCCCceEEEEeCccc-CCHHHHHHHHHHHhcCC-----------
Confidence 000 01122222222 2356999999999 99999999999998531
Q ss_pred CCcEEEEecCC
Q 001355 845 SGMIFVATSTI 855 (1093)
Q Consensus 845 ~naI~IlTSN~ 855 (1093)
.+++||+++|.
T Consensus 131 ~~~~lIl~~~~ 141 (319)
T PRK00440 131 QNTRFILSCNY 141 (319)
T ss_pred CCCeEEEEeCC
Confidence 24568888773
No 117
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.78 E-value=5.8e-08 Score=115.86 Aligned_cols=138 Identities=24% Similarity=0.279 Sum_probs=91.4
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc--eEEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK--LIHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--fv~id~s~~~~~ 768 (1093)
+..|+||+.++..|..++...|..+ ..||.||.|||||.+||.+|+.+-..... -.+..|..+...
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri~h------------AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I 82 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRIAH------------AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEI 82 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcchh------------hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhh
Confidence 3567999999999999998776522 38999999999999999999999665321 122333322111
Q ss_pred CCCCccccCCCccccccccccchhhhHHHHHHHhCC----ceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeec
Q 001355 769 SQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKP----YSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSI 844 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p----~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l 844 (1093)
.....+ +-..+-+.. -.|-+.++.|.+.+...| +.|++||||+. +.....|+||+.+|+ ..
T Consensus 83 ~~g~~~-DviEiDaAS--n~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHM-LS~~afNALLKTLEE-----------PP 147 (515)
T COG2812 83 NEGSLI-DVIEIDAAS--NTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHM-LSKQAFNALLKTLEE-----------PP 147 (515)
T ss_pred hcCCcc-cchhhhhhh--ccChHHHHHHHHHhccCCccccceEEEEecHHh-hhHHHHHHHhccccc-----------Cc
Confidence 111000 000111111 123344556666665444 45999999999 999999999999996 34
Q ss_pred CCcEEEEecCC
Q 001355 845 SGMIFVATSTI 855 (1093)
Q Consensus 845 ~naI~IlTSN~ 855 (1093)
.+++|||+|.-
T Consensus 148 ~hV~FIlATTe 158 (515)
T COG2812 148 SHVKFILATTE 158 (515)
T ss_pred cCeEEEEecCC
Confidence 57889998873
No 118
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=7.5e-08 Score=111.97 Aligned_cols=136 Identities=19% Similarity=0.231 Sum_probs=87.0
Q ss_pred HHhcccCccHHHHHHHHHHHHHHHh--cCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcc
Q 001355 689 ALAEKVGWQDEAICTISQAVSRWRI--GNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQ 766 (1093)
Q Consensus 689 ~L~e~ViGQdeai~~Ia~aI~~~rs--g~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~ 766 (1093)
.=++.|-|-|+|..++-+.+.-.+. ...+-.++..| -+||.||||+|||.+||++|-.- ..+|++...++++
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPK---GVLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPK---GVLLVGPPGTGKTLLARAVAGEA---GVPFFYASGSEFD 374 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCC---ceEEeCCCCCchhHHHHHhhccc---CCCeEeccccchh
Confidence 3367889999998877776654431 11111233333 38999999999999999999543 6688776666554
Q ss_pred ccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccC----------HHHHHHHhhhhcCCeEec
Q 001355 767 RVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAAD----------PIVQSSLTKAISTGKFTD 836 (1093)
Q Consensus 767 ~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad----------~~vq~~Ll~aLe~Gr~~d 836 (1093)
+ .|+| +|...++.|+.+.+.+-.+||||||||.|.. .+..|.|+--|+ | |.-
T Consensus 375 E-----------m~VG-----vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmD-G-F~q 436 (752)
T KOG0734|consen 375 E-----------MFVG-----VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMD-G-FKQ 436 (752)
T ss_pred h-----------hhhc-----ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhc-C-cCc
Confidence 3 2222 3445566677777777779999999996221 234455555554 2 111
Q ss_pred CCCeEeecCCcEEEEecCC
Q 001355 837 SYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 837 ~~G~~V~l~naI~IlTSN~ 855 (1093)
. ...|||.+||.
T Consensus 437 N-------eGiIvigATNf 448 (752)
T KOG0734|consen 437 N-------EGIIVIGATNF 448 (752)
T ss_pred C-------CceEEEeccCC
Confidence 1 24678888885
No 119
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.77 E-value=6.5e-08 Score=114.43 Aligned_cols=130 Identities=20% Similarity=0.200 Sum_probs=79.3
Q ss_pred ccCccHHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 693 KVGWQDEAICTISQAVSRWR--------IGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~r--------sg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.|.|.++.+..|.+++.... .|... +.-+||+||+|||||.+|+++|..+ ...|+.++.+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~--------p~gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~se 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKP--------PKGVILYGPPGTGKTLLAKAVANET---SATFLRVVGSE 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCC--------CcEEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecch
Confidence 45888888888888876421 12221 1248999999999999999999987 45688776553
Q ss_pred ccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc----------CHHHHHHHhhhhcCCeE
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA----------DPIVQSSLTKAISTGKF 834 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia----------d~~vq~~Ll~aLe~Gr~ 834 (1093)
.. ..+.|... ..+..+....+.+..+||||||||.++ +..++..++++|..-.-
T Consensus 253 L~-----------~k~~Ge~~-----~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 253 LI-----------QKYLGDGP-----KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred hh-----------hhhcchHH-----HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 21 12222211 223344444445556899999999733 23456666665542100
Q ss_pred ecCCCeEeecCCcEEEEecCC
Q 001355 835 TDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 835 ~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.+ ...+++||++||.
T Consensus 317 ~~------~~~~V~VI~ATNr 331 (438)
T PTZ00361 317 FD------SRGDVKVIMATNR 331 (438)
T ss_pred hc------ccCCeEEEEecCC
Confidence 00 1235678888884
No 120
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.77 E-value=1e-07 Score=109.23 Aligned_cols=148 Identities=11% Similarity=0.046 Sum_probs=80.0
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhcc------CCCceEEeecC--
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFG------NKGKLIHVDVS-- 763 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfg------s~~~fv~id~s-- 763 (1093)
..|+||++++..+.-++... |. ..+||.|++|+|||++|++|+..+-. ..-.+..+.+.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~--~~-----------~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~ 74 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP--GI-----------GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPE 74 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc--CC-----------CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcc
Confidence 45899999988776543221 11 25999999999999999999999831 10011111110
Q ss_pred --Cccc--c-------CCCCccccCCCcccccc---cc-ccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhh
Q 001355 764 --SEQR--V-------SQPNSIFDCQNIDFCDC---KL-RGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKA 828 (1093)
Q Consensus 764 --~~~~--~-------~~~~si~~~~~l~G~~~---g~-~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~a 828 (1093)
.... . ...+.-.....++|..+ .. .|+. ..-.+.+....++++|||||+. +++.+|..|+++
T Consensus 75 ~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~--~~~~G~l~~A~~GiL~lDEInr-l~~~~q~~Lle~ 151 (334)
T PRK13407 75 WAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEK--AFEPGLLARANRGYLYIDEVNL-LEDHIVDLLLDV 151 (334)
T ss_pred cccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCe--eecCCceEEcCCCeEEecChHh-CCHHHHHHHHHH
Confidence 0000 0 00000000011333200 00 0000 0012233334557999999999 999999999999
Q ss_pred hcCCeEec-CCCeEeec-CCcEEEEecCC
Q 001355 829 ISTGKFTD-SYGRDVSI-SGMIFVATSTI 855 (1093)
Q Consensus 829 Le~Gr~~d-~~G~~V~l-~naI~IlTSN~ 855 (1093)
|++|.++- ..|....+ .+.++|.|.|.
T Consensus 152 mee~~v~v~r~G~~~~~p~rfiviAt~NP 180 (334)
T PRK13407 152 AQSGENVVEREGLSIRHPARFVLVGSGNP 180 (334)
T ss_pred HHcCCeEEEECCeEEecCCCEEEEecCCc
Confidence 99998532 22333333 24456666663
No 121
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.77 E-value=3.2e-08 Score=97.35 Aligned_cols=111 Identities=16% Similarity=0.254 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC--CCceEE
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN--KGKLIH 759 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs--~~~fv~ 759 (1093)
++..|++.|.++++||.-|++.|..+|....... .+ +.+++|.|+|++||||+++++.||+.+|.. ..+||.
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~-~p-----~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~ 88 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP-NP-----RKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVH 88 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC-CC-----CCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCcee
Confidence 6779999999999999999999999999886532 22 344799999999999999999999999965 556766
Q ss_pred eecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEE
Q 001355 760 VDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFL 810 (1093)
Q Consensus 760 id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~L 810 (1093)
.-.+..+ +.....+ ..|. ......+.+.++..|.++++|
T Consensus 89 ~f~~~~h-FP~~~~v----------~~Yk-~~L~~~I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 89 QFIATHH-FPHNSNV----------DEYK-EQLKSWIRGNVSRCPRSLFIF 127 (127)
T ss_pred eeccccc-CCCchHH----------HHHH-HHHHHHHHHHHHhCCcCeeeC
Confidence 5544321 1110000 1111 123367788888899988765
No 122
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.76 E-value=6.1e-08 Score=111.30 Aligned_cols=147 Identities=12% Similarity=0.095 Sum_probs=80.3
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhc----------cC---CCceE
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVF----------GN---KGKLI 758 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lf----------gs---~~~fv 758 (1093)
..|+||++++.++.-++... ...++++.|++|+|||+++++|+..+- +. .+.++
T Consensus 4 ~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMM 70 (337)
T ss_pred cccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcccc
Confidence 46899999988776554321 123689999999999999999998872 11 11122
Q ss_pred EeecCCccccCC-----------CCcccc--CCCcccccc---cc-ccchhhhHHHHHHHhCCceEEEEcccccccCHHH
Q 001355 759 HVDVSSEQRVSQ-----------PNSIFD--CQNIDFCDC---KL-RGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIV 821 (1093)
Q Consensus 759 ~id~s~~~~~~~-----------~~si~~--~~~l~G~~~---g~-~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~v 821 (1093)
+.+|.....+.+ .+.-.+ ...++|..+ .. .|+.. .-.+.+.+..++|+|||||+. +++.+
T Consensus 71 ~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~--~~~GlL~~A~~GvL~lDEi~~-L~~~~ 147 (337)
T TIGR02030 71 CEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKA--FEPGLLARANRGILYIDEVNL-LEDHL 147 (337)
T ss_pred ChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEE--eecCcceeccCCEEEecChHh-CCHHH
Confidence 222222100000 000000 012222210 00 00000 001223334567999999999 99999
Q ss_pred HHHHhhhhcCCeEec-CCCeEeec-CCcEEEEecC
Q 001355 822 QSSLTKAISTGKFTD-SYGRDVSI-SGMIFVATST 854 (1093)
Q Consensus 822 q~~Ll~aLe~Gr~~d-~~G~~V~l-~naI~IlTSN 854 (1093)
|..|+++|++|.++- ..|....+ .+.++|.|.|
T Consensus 148 Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~n 182 (337)
T TIGR02030 148 VDVLLDVAASGWNVVEREGISIRHPARFVLVGSGN 182 (337)
T ss_pred HHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccc
Confidence 999999999986322 22333333 2345555555
No 123
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=6.4e-08 Score=116.68 Aligned_cols=98 Identities=21% Similarity=0.245 Sum_probs=68.4
Q ss_pred ccCccHHHHHHHHHHHHH-------HHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc
Q 001355 693 KVGWQDEAICTISQAVSR-------WRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE 765 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~-------~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~ 765 (1093)
.|.|-+++...|..+|.- .-+|+++|. -+|||||||||||.||||+|-.. .-+|++|-..+.
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRS--------GILLYGPPGTGKTLlAKAVATEc---sL~FlSVKGPEL 741 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRS--------GILLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPEL 741 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccc--------eeEEECCCCCchHHHHHHHHhhc---eeeEEeecCHHH
Confidence 477788899999999865 224454441 39999999999999999999765 445665543321
Q ss_pred cccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc
Q 001355 766 QRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA 817 (1093)
Q Consensus 766 ~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia 817 (1093)
- ..|+|..+. -++.+++..|....+||||||+|-+|
T Consensus 742 L-----------NMYVGqSE~-----NVR~VFerAR~A~PCVIFFDELDSlA 777 (953)
T KOG0736|consen 742 L-----------NMYVGQSEE-----NVREVFERARSAAPCVIFFDELDSLA 777 (953)
T ss_pred H-----------HHHhcchHH-----HHHHHHHHhhccCCeEEEeccccccC
Confidence 1 244444332 24566666677777999999999855
No 124
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.76 E-value=1.3e-07 Score=114.63 Aligned_cols=158 Identities=13% Similarity=0.057 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
-+..|.+.+...|+|++.+..+|.-++....... ...+..-..+.++||.|++|+|||.+|+.+|....+. .|+...
T Consensus 193 ~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~-~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~--~~~~~~ 269 (509)
T smart00350 193 IYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKN-LPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA--VYTTGK 269 (509)
T ss_pred HHHHHHHhhCccccCcHHHHHHHHHHHhCCCccc-cCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc--eEcCCC
Confidence 4456777788899999998777766554321100 0111112356799999999999999999999976332 333211
Q ss_pred cCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCC-Ce
Q 001355 762 VSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY-GR 840 (1093)
Q Consensus 762 ~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~-G~ 840 (1093)
......... . .... + +.|.-. .-.+++.....++++|||+++ +++..|..|+++|+++.++-.+ |.
T Consensus 270 ~~~~~~l~~--~-----~~~~--~-~~g~~~--~~~G~l~~A~~Gil~iDEi~~-l~~~~q~~L~e~me~~~i~i~k~G~ 336 (509)
T smart00350 270 GSSAVGLTA--A-----VTRD--P-ETREFT--LEGGALVLADNGVCCIDEFDK-MDDSDRTAIHEAMEQQTISIAKAGI 336 (509)
T ss_pred CCCcCCccc--c-----ceEc--c-CcceEE--ecCccEEecCCCEEEEechhh-CCHHHHHHHHHHHhcCEEEEEeCCE
Confidence 010000000 0 0000 0 001000 001233345568999999999 9999999999999999876433 43
Q ss_pred Eeec-CCcEEEEecCC
Q 001355 841 DVSI-SGMIFVATSTI 855 (1093)
Q Consensus 841 ~V~l-~naI~IlTSN~ 855 (1093)
...+ .+..||+|+|.
T Consensus 337 ~~~l~~~~~viAa~NP 352 (509)
T smart00350 337 TTTLNARCSVLAAANP 352 (509)
T ss_pred EEEecCCcEEEEEeCC
Confidence 3333 36788999995
No 125
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=3.2e-07 Score=106.81 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=77.6
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCC-------ceEEeecC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKG-------KLIHVDVS 763 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~-------~fv~id~s 763 (1093)
.+.|+||+.++..+...+...+. .-.++|+||+|+|||++|+++++.+++... ++..+++.
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~------------~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~ 83 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHL------------AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD 83 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec
Confidence 35689999999888877754211 126999999999999999999999865211 11111110
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCC
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYG 839 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G 839 (1093)
. .+..+...+..+.+.+.. .++.||+|||+|. ++...++.|++.+++.
T Consensus 84 ~--------------------~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~-l~~~~~~~ll~~le~~------- 135 (367)
T PRK14970 84 A--------------------ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHM-LSSAAFNAFLKTLEEP------- 135 (367)
T ss_pred c--------------------ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhh-cCHHHHHHHHHHHhCC-------
Confidence 0 000111222333333332 2356999999999 9999999999999852
Q ss_pred eEeecCCcEEEEecC
Q 001355 840 RDVSISGMIFVATST 854 (1093)
Q Consensus 840 ~~V~l~naI~IlTSN 854 (1093)
..+++||++++
T Consensus 136 ----~~~~~~Il~~~ 146 (367)
T PRK14970 136 ----PAHAIFILATT 146 (367)
T ss_pred ----CCceEEEEEeC
Confidence 12567888776
No 126
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.74 E-value=2.4e-07 Score=107.27 Aligned_cols=144 Identities=14% Similarity=0.148 Sum_probs=81.6
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCC------CceEEeecCCc
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNK------GKLIHVDVSSE 765 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~------~~fv~id~s~~ 765 (1093)
+.++|+++.++.|...+..+..+.. ...++++||+|+|||.+++++.+.+.... -.++++||...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~---------~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSR---------PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCC---------CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 5689999999999999887654321 12599999999999999999998764221 35788888753
Q ss_pred cccCC-CCccccCCCcc--ccccccccc---hhhhHHHHHHHh-CCceEEEEcccccccC---HHHHHHHhhhhcCCeEe
Q 001355 766 QRVSQ-PNSIFDCQNID--FCDCKLRGK---VLVDYIYQEFRS-KPYSVVFLEDLDKAAD---PIVQSSLTKAISTGKFT 835 (1093)
Q Consensus 766 ~~~~~-~~si~~~~~l~--G~~~g~~g~---~~~~~l~eal~~-~p~~VI~LDEVDkiad---~~vq~~Ll~aLe~Gr~~ 835 (1093)
..... ...+. ..+. |......+. .....+.+.+.. ++..||+|||+|. +. ..+...|+++.+....
T Consensus 86 ~~~~~~~~~i~--~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~-L~~~~~~~L~~l~~~~~~~~~- 161 (365)
T TIGR02928 86 DTLYQVLVELA--NQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDY-LVGDDDDLLYQLSRARSNGDL- 161 (365)
T ss_pred CCHHHHHHHHH--HHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhh-hccCCcHHHHhHhccccccCC-
Confidence 21100 00000 0111 111111121 122444555543 4456899999999 52 2333344433221111
Q ss_pred cCCCeEeecCCcEEEEecCC
Q 001355 836 DSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 836 d~~G~~V~l~naI~IlTSN~ 855 (1093)
.-.+.++|+++|.
T Consensus 162 -------~~~~v~lI~i~n~ 174 (365)
T TIGR02928 162 -------DNAKVGVIGISND 174 (365)
T ss_pred -------CCCeEEEEEEECC
Confidence 1135667887773
No 127
>CHL00176 ftsH cell division protein; Validated
Probab=98.74 E-value=2e-07 Score=115.12 Aligned_cols=104 Identities=17% Similarity=0.200 Sum_probs=65.1
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.|.|.++++..+...+...+...... ....+.+..+||+||+|||||.+|++||... ..+|+.++++.+..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~-~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~---- 254 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFT-AVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVE---- 254 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHh-hccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHH----
Confidence 458888888888777665433211100 0001122359999999999999999999876 56888888775321
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccc
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDK 815 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDk 815 (1093)
.+.|. +...+..+....+....+||||||||.
T Consensus 255 -------~~~g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~ 286 (638)
T CHL00176 255 -------MFVGV-----GAARVRDLFKKAKENSPCIVFIDEIDA 286 (638)
T ss_pred -------Hhhhh-----hHHHHHHHHHHHhcCCCcEEEEecchh
Confidence 11111 112233344444455558999999998
No 128
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.74 E-value=1e-07 Score=109.57 Aligned_cols=147 Identities=13% Similarity=0.101 Sum_probs=80.2
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCC----CceEEeecCCcc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNK----GKLIHVDVSSEQ 766 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~----~~fv~id~s~~~ 766 (1093)
+..|+||++++.++.-.+...+. .-++|.|++|+|||++||.+++.+.... .+|. .+.....
T Consensus 16 f~~ivGq~~~k~al~~~~~~p~~-------------~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~ 81 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDPKI-------------GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPE 81 (350)
T ss_pred HHHHhChHHHHHHHHHhccCCCC-------------CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChh
Confidence 35689999998877765543211 2488999999999999999999885321 1231 0000000
Q ss_pred ccCCCCcccc-------------------------CCCcccccc---ccccchhhhHHHHHHHhCCceEEEEcccccccC
Q 001355 767 RVSQPNSIFD-------------------------CQNIDFCDC---KLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAAD 818 (1093)
Q Consensus 767 ~~~~~~si~~-------------------------~~~l~G~~~---g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad 818 (1093)
... ....+ ...++|.-+ .+.+... ..-.+.+.+..++|||||||+. ++
T Consensus 82 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~-~~~~GlL~~A~~GiL~lDEInr-L~ 157 (350)
T CHL00081 82 LMS--DEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVK-AFEPGLLAKANRGILYVDEVNL-LD 157 (350)
T ss_pred hhc--hhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcc-cccCCeeeecCCCEEEecChHh-CC
Confidence 000 00000 001122100 0000000 0001223344567999999999 99
Q ss_pred HHHHHHHhhhhcCCeEec-CCCeEeec-CCcEEEEecCC
Q 001355 819 PIVQSSLTKAISTGKFTD-SYGRDVSI-SGMIFVATSTI 855 (1093)
Q Consensus 819 ~~vq~~Ll~aLe~Gr~~d-~~G~~V~l-~naI~IlTSN~ 855 (1093)
+.+|..|+++|++|..+- ..|....+ .+.++|.|.|.
T Consensus 158 ~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np 196 (350)
T CHL00081 158 DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNP 196 (350)
T ss_pred HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCc
Confidence 999999999999976442 12433322 24455555553
No 129
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.73 E-value=7e-08 Score=107.89 Aligned_cols=85 Identities=15% Similarity=0.320 Sum_probs=58.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHH----hC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR----SK 803 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~----~~ 803 (1093)
.|+|+||+|||||.+|+.|+...-...-.||.+....... .++-+.+..+-+ -+
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t----------------------~dvR~ife~aq~~~~l~k 221 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKT----------------------NDVRDIFEQAQNEKSLTK 221 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccch----------------------HHHHHHHHHHHHHHhhhc
Confidence 4999999999999999999987643333455554332110 001111222111 23
Q ss_pred CceEEEEcccccccCHHHHHHHhhhhcCCeEe
Q 001355 804 PYSVVFLEDLDKAADPIVQSSLTKAISTGKFT 835 (1093)
Q Consensus 804 p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~ 835 (1093)
...|||||||++ .+..-|+.|+..+|+|.++
T Consensus 222 rkTilFiDEiHR-FNksQQD~fLP~VE~G~I~ 252 (554)
T KOG2028|consen 222 RKTILFIDEIHR-FNKSQQDTFLPHVENGDIT 252 (554)
T ss_pred ceeEEEeHHhhh-hhhhhhhcccceeccCceE
Confidence 456999999999 9999999999999998655
No 130
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=9e-08 Score=102.39 Aligned_cols=130 Identities=20% Similarity=0.263 Sum_probs=86.4
Q ss_pred ccCccHHHHHHHHHHHHHH--------HhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 693 KVGWQDEAICTISQAVSRW--------RIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~--------rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
-|.|-+..|..|.+.|.-. ..|+..|+ -+||+||+|+|||.+|+++|... .--||++..+.
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPK--------GvlLygppgtGktLlaraVahht---~c~firvsgse 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK--------GVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSE 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCc--------ceEEecCCCCchhHHHHHHHhhc---ceEEEEechHH
Confidence 3556666777777776432 24555442 28999999999999999999876 33577776654
Q ss_pred ccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc----------CHHHHHHHhhhhcCCeE
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA----------DPIVQSSLTKAISTGKF 834 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia----------d~~vq~~Ll~aLe~Gr~ 834 (1093)
.- +.|+|. |...+..++-..++...+|||+||||.|. |.++|..+++++..=
T Consensus 217 lv-----------qk~ige-----gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql-- 278 (404)
T KOG0728|consen 217 LV-----------QKYIGE-----GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL-- 278 (404)
T ss_pred HH-----------HHHhhh-----hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc--
Confidence 21 234442 23344556656677777999999999633 678999999888631
Q ss_pred ecCCCeEeecCCcEEEEecCC
Q 001355 835 TDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 835 ~d~~G~~V~l~naI~IlTSN~ 855 (1093)
+|-+ ..+|.-+|++||.
T Consensus 279 ---dgfe-atknikvimatnr 295 (404)
T KOG0728|consen 279 ---DGFE-ATKNIKVIMATNR 295 (404)
T ss_pred ---cccc-cccceEEEEeccc
Confidence 1211 2245668888884
No 131
>PHA02244 ATPase-like protein
Probab=98.72 E-value=1.1e-07 Score=108.97 Aligned_cols=134 Identities=14% Similarity=0.147 Sum_probs=89.8
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPN 772 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~ 772 (1093)
..+|+...+......+.++.. .+.+++|.||+|||||.+|++||..+ ..+|+.++... +.
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~-----------~~~PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~l~-d~----- 156 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVN-----------ANIPVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNAIM-DE----- 156 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHh-----------cCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecCh-HH-----
Confidence 345666555555555544422 12369999999999999999999986 56788887321 00
Q ss_pred ccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEe
Q 001355 773 SIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVAT 852 (1093)
Q Consensus 773 si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlT 852 (1093)
..+.|.... .|.-.-+.+..+++ .++++|||||+. +++.++..|..+++.+.+...+++...-.+..+|+|
T Consensus 157 -----~~L~G~i~~-~g~~~dgpLl~A~~--~GgvLiLDEId~-a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIAT 227 (383)
T PHA02244 157 -----FELKGFIDA-NGKFHETPFYEAFK--KGGLFFIDEIDA-SIPEALIIINSAIANKFFDFADERVTAHEDFRVISA 227 (383)
T ss_pred -----Hhhcccccc-cccccchHHHHHhh--cCCEEEEeCcCc-CCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEe
Confidence 011121110 01111135666654 467999999999 999999999999999877766555444467889999
Q ss_pred cCC
Q 001355 853 STI 855 (1093)
Q Consensus 853 SN~ 855 (1093)
+|.
T Consensus 228 sN~ 230 (383)
T PHA02244 228 GNT 230 (383)
T ss_pred eCC
Confidence 996
No 132
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.4e-07 Score=114.06 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=68.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
-+||+||||||||++|+++|..+ +.+|+.++.+.+. ..++|.... .+..+....+....+|
T Consensus 278 giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~-----------sk~vGesek-----~ir~~F~~A~~~~p~i 338 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELL-----------SKWVGESEK-----NIRELFEKARKLAPSI 338 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHHHh-----------ccccchHHH-----HHHHHHHHHHcCCCcE
Confidence 59999999999999999999865 7789999988543 233333221 2344444445555699
Q ss_pred EEEcccccccC----------HHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 808 VFLEDLDKAAD----------PIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 808 I~LDEVDkiad----------~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
|||||||.++. ..+.+.|+..++.-. ...++++|.+||.
T Consensus 339 iFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e---------~~~~v~vi~aTN~ 387 (494)
T COG0464 339 IFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE---------KAEGVLVIAATNR 387 (494)
T ss_pred EEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC---------ccCceEEEecCCC
Confidence 99999998442 246666666665211 2245678888884
No 133
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.71 E-value=4e-08 Score=96.08 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=68.3
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCC-ceE
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKP-YSV 807 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p-~~V 807 (1093)
+||+||+|+|||++|+.+|+.+ ..+|+.+++....+. +.+. ....+..+........ .+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~-----------~~~~-----~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS-----------YAGD-----SEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS-----------STTH-----HHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc-----------cccc-----ccccccccccccccccccee
Confidence 6899999999999999999998 577889998863211 0010 1122233333344443 599
Q ss_pred EEEcccccccCHH-----------HHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 808 VFLEDLDKAADPI-----------VQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 808 I~LDEVDkiad~~-----------vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
|||||+|. +-.. +++.|+..+++..-. -++.+||+|||.
T Consensus 62 l~iDe~d~-l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--------~~~~~vI~ttn~ 111 (132)
T PF00004_consen 62 LFIDEIDK-LFPKSQPSSSSFEQRLLNQLLSLLDNPSSK--------NSRVIVIATTNS 111 (132)
T ss_dssp EEEETGGG-TSHHCSTSSSHHHHHHHHHHHHHHHTTTTT--------SSSEEEEEEESS
T ss_pred eeeccchh-cccccccccccccccccceeeecccccccc--------cccceeEEeeCC
Confidence 99999999 6554 488888888864311 246789999995
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.71 E-value=8.9e-08 Score=120.87 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=78.8
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC-------CCceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN-------KGKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs-------~~~fv~id~s~ 764 (1093)
+.|+||++.+..+...+.+.. + ..++|+||+|||||.+|+.||+.+... +..++.+|++.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~----~---------~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~ 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK----K---------NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC----C---------CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH
Confidence 358999988887665543221 1 148999999999999999999987432 23466666553
Q ss_pred ccccCCCCccccCCCccccccccccc--hhhhHHHHHHHhCCceEEEEccccccc--------CHHHHHHHhhhhcCCeE
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGK--VLVDYIYQEFRSKPYSVVFLEDLDKAA--------DPIVQSSLTKAISTGKF 834 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~--~~~~~l~eal~~~p~~VI~LDEVDkia--------d~~vq~~Ll~aLe~Gr~ 834 (1093)
... | ..|+|. ..+..+.+.+..+...|||||||+.|. +.+.++.|+.++++|.+
T Consensus 249 l~a--------------~--~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i 312 (731)
T TIGR02639 249 LLA--------------G--TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKL 312 (731)
T ss_pred Hhh--------------h--ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCe
Confidence 210 0 112221 112333444444556799999999733 25678999999987654
Q ss_pred ecCCCeEeecCCcEEEEecCC
Q 001355 835 TDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 835 ~d~~G~~V~l~naI~IlTSN~ 855 (1093)
. +|.+||.
T Consensus 313 ~-------------~IgaTt~ 320 (731)
T TIGR02639 313 R-------------CIGSTTY 320 (731)
T ss_pred E-------------EEEecCH
Confidence 4 7888873
No 135
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.71 E-value=6.7e-08 Score=118.94 Aligned_cols=54 Identities=26% Similarity=0.350 Sum_probs=42.6
Q ss_pred HHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC
Q 001355 685 TLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN 753 (1093)
Q Consensus 685 ~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs 753 (1093)
.+...+.+.|+||++++..|..++...+ .++|+||+|+|||++|+++++.++..
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~~~---------------~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQRR---------------HVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHhCC---------------eEEEECCCCCcHHHHHHHHHHHcChH
Confidence 3334567889999999998877665321 38999999999999999999887543
No 136
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=1.8e-07 Score=108.16 Aligned_cols=135 Identities=15% Similarity=0.164 Sum_probs=82.9
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCC----ce-EEeecCC--
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKG----KL-IHVDVSS-- 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~----~f-v~id~s~-- 764 (1093)
..++||++++..+..++...+. | -.+||+||.|+||+.+|+.+|+.+.+... +. ....|..
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl-------~-----ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~ 90 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKL-------H-----HALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASP 90 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCC-------C-----eeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCH
Confidence 4689999999988888764432 1 14899999999999999999999977321 11 1111111
Q ss_pred -ccccCCCCccccCCCc--cccc--c--c----cccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhh
Q 001355 765 -EQRVSQPNSIFDCQNI--DFCD--C--K----LRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAI 829 (1093)
Q Consensus 765 -~~~~~~~~si~~~~~l--~G~~--~--g----~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aL 829 (1093)
+....... .+.+ +..+ + + .++.+.+..+.+.+.. ..+.||+|||+|. ++...++.|++.|
T Consensus 91 ~c~~i~~~~----hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~-l~~~aanaLLk~L 165 (351)
T PRK09112 91 VWRQIAQGA----HPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADD-MNRNAANAILKTL 165 (351)
T ss_pred HHHHHHcCC----CCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhh-cCHHHHHHHHHHH
Confidence 00000000 0111 1000 0 0 1112233344444443 4567999999999 9999999999999
Q ss_pred cCCeEecCCCeEeecCCcEEEEecC
Q 001355 830 STGKFTDSYGRDVSISGMIFVATST 854 (1093)
Q Consensus 830 e~Gr~~d~~G~~V~l~naI~IlTSN 854 (1093)
|+.. .+++||+.|+
T Consensus 166 EEpp-----------~~~~fiLit~ 179 (351)
T PRK09112 166 EEPP-----------ARALFILISH 179 (351)
T ss_pred hcCC-----------CCceEEEEEC
Confidence 9631 3567777776
No 137
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.70 E-value=4.3e-07 Score=99.48 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=45.4
Q ss_pred hHHHhhccc--cccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 001355 975 LEDFFDQTD--AIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENV 1048 (1093)
Q Consensus 975 ~~efl~rId--~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~v 1048 (1093)
.++|..|+. .++.++|++.+++.+++.+.... .+ +.++++++++|+...- + -.|.++..++.+
T Consensus 149 ~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~-------~~--~~l~~~v~~~L~~~~~-~-d~r~l~~~l~~l 213 (235)
T PRK08084 149 LPDLASRLDWGQIYKLQPLSDEEKLQALQLRARL-------RG--FELPEDVGRFLLKRLD-R-EMRTLFMTLDQL 213 (235)
T ss_pred cHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhhc-C-CHHHHHHHHHHH
Confidence 467777775 68999999999999987654332 12 7899999999998733 2 234566666664
No 138
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.70 E-value=1.3e-07 Score=116.65 Aligned_cols=53 Identities=30% Similarity=0.366 Sum_probs=42.7
Q ss_pred HHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC
Q 001355 686 LRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN 753 (1093)
Q Consensus 686 L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs 753 (1093)
+-+.|...|+||++++..+..++...+ .++|+||+|+|||++|+++++.+...
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~~~---------------~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQKR---------------NVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHcCC---------------CEEEECCCCCCHHHHHHHHHHHcCch
Confidence 344688899999999988777665321 37899999999999999999888544
No 139
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.70 E-value=7.1e-07 Score=97.88 Aligned_cols=106 Identities=13% Similarity=0.198 Sum_probs=73.8
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
...+||+.+.+.+.-.|..++.... . --++||+||||.|||+||..||..+ +.++- +--+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e----~----lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k-~tsG-------- 85 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGE----A----LDHVLLFGPPGLGKTTLAHIIANEL---GVNLK-ITSG-------- 85 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCC----C----cCeEEeeCCCCCcHHHHHHHHHHHh---cCCeE-eccc--------
Confidence 4579999999999888877664221 1 1379999999999999999999988 22211 1100
Q ss_pred CccccCCCccccccccccchhhhHHHHHHH-hCCceEEEEcccccccCHHHHHHHhhhhcCCeE
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFR-SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKF 834 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~-~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~ 834 (1093)
+.+. .+ +.+...+. -.++.|+|||||++ +++.+-..|..+||+-++
T Consensus 86 ------p~le--K~--------gDlaaiLt~Le~~DVLFIDEIHr-l~~~vEE~LYpaMEDf~l 132 (332)
T COG2255 86 ------PALE--KP--------GDLAAILTNLEEGDVLFIDEIHR-LSPAVEEVLYPAMEDFRL 132 (332)
T ss_pred ------cccc--Ch--------hhHHHHHhcCCcCCeEEEehhhh-cChhHHHHhhhhhhheeE
Confidence 0000 01 12233322 24678999999999 999999999999997654
No 140
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=8.2e-08 Score=113.27 Aligned_cols=132 Identities=12% Similarity=0.236 Sum_probs=83.9
Q ss_pred cccCccHHHHHHHHHHHHHH-------HhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRW-------RIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~-------rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+.+.|-+..+..+...|... ..|...++ -+||+||||||||.+|++||..+ .-+|+.|...+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~Ppr--------GvLlHGPPGCGKT~lA~AiAgel---~vPf~~isApe 258 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPR--------GVLLHGPPGCGKTSLANAIAGEL---GVPFLSISAPE 258 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCC--------ceeeeCCCCccHHHHHHHHhhhc---CCceEeecchh
Confidence 44666666666666665442 23554443 28999999999999999999988 78898887654
Q ss_pred ccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccC----------HHHHHHHhhhhcCCeE
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAAD----------PIVQSSLTKAISTGKF 834 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad----------~~vq~~Ll~aLe~Gr~ 834 (1093)
.- .++.|..+ ..++.+++....+-.+||||||||.|+. ..+...|+.-|++=..
T Consensus 259 iv-----------SGvSGESE-----kkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~ 322 (802)
T KOG0733|consen 259 IV-----------SGVSGESE-----KKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSN 322 (802)
T ss_pred hh-----------cccCcccH-----HHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccc
Confidence 21 12223222 2344555544555559999999998543 2344556666664333
Q ss_pred ecCCCeEeecCCcEEEEecCC
Q 001355 835 TDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 835 ~d~~G~~V~l~naI~IlTSN~ 855 (1093)
...+| ..++||.+||.
T Consensus 323 ~~~~g-----~~VlVIgATnR 338 (802)
T KOG0733|consen 323 EKTKG-----DPVLVIGATNR 338 (802)
T ss_pred cccCC-----CCeEEEecCCC
Confidence 22222 34789999996
No 141
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.69 E-value=2.6e-07 Score=111.88 Aligned_cols=135 Identities=17% Similarity=0.196 Sum_probs=77.6
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.|+|++++...+.+.+...+......+ ...+.+.-+||+||+|||||++|++||... ..+|+.++++.+..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~-~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~---- 126 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTK-LGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVE---- 126 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHh-cCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHHH----
Confidence 3568888887777766653321100000 000111249999999999999999999876 56788887664321
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccC----------H---HHHHHHhhhhcCCeEecCC
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAAD----------P---IVQSSLTKAISTGKFTDSY 838 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad----------~---~vq~~Ll~aLe~Gr~~d~~ 838 (1093)
.+.|. +...+..+....+.+..+||||||||.|.. . .+.+.|+..|+. +.
T Consensus 127 -------~~~g~-----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~--~~--- 189 (495)
T TIGR01241 127 -------MFVGV-----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG--FG--- 189 (495)
T ss_pred -------HHhcc-----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc--cc---
Confidence 11111 112233444444555558999999998321 1 233445555542 11
Q ss_pred CeEeecCCcEEEEecCC
Q 001355 839 GRDVSISGMIFVATSTI 855 (1093)
Q Consensus 839 G~~V~l~naI~IlTSN~ 855 (1093)
.-.+.+||+|||.
T Consensus 190 ----~~~~v~vI~aTn~ 202 (495)
T TIGR01241 190 ----TNTGVIVIAATNR 202 (495)
T ss_pred ----CCCCeEEEEecCC
Confidence 1134678888885
No 142
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=1.6e-07 Score=107.02 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=85.2
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQ 770 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~ 770 (1093)
.+.|+||++++..+..++...+.. -.+||+||.|+||+.+|.++|+.+++....-.+..|. ......
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~------------ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~-~~~~~h 69 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIA------------PAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRR-LEEGNH 69 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCC------------ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcc-cccCCC
Confidence 467999999999998888655431 1599999999999999999999998764210111111 000000
Q ss_pred CCcc-ccCC-Ccccc---------------ccccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhh
Q 001355 771 PNSI-FDCQ-NIDFC---------------DCKLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAI 829 (1093)
Q Consensus 771 ~~si-~~~~-~l~G~---------------~~g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aL 829 (1093)
.+.. ..+. ...|. ..+.++.+.++.+.+.+... .+.|++||++|+ ++...+|.|++.|
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~-m~~~aaNaLLK~L 148 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAET-MNEAAANALLKTL 148 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhh-cCHHHHHHHHHHH
Confidence 0000 0000 00010 00011112334555555543 456999999999 9999999999999
Q ss_pred cCCeEecCCCeEeecCCcEEEEecC
Q 001355 830 STGKFTDSYGRDVSISGMIFVATST 854 (1093)
Q Consensus 830 e~Gr~~d~~G~~V~l~naI~IlTSN 854 (1093)
|+- . +++||++|+
T Consensus 149 EEP----------p--~~~fILi~~ 161 (314)
T PRK07399 149 EEP----------G--NGTLILIAP 161 (314)
T ss_pred hCC----------C--CCeEEEEEC
Confidence 962 1 456888776
No 143
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1.5e-07 Score=109.35 Aligned_cols=136 Identities=15% Similarity=0.122 Sum_probs=83.1
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc-eE-----------E
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK-LI-----------H 759 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~-fv-----------~ 759 (1093)
..|+||++++..+..++...+. + -.+||+||.|+||+.+|.++|+.+++.... -- +
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl-------~-----HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~ 86 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRL-------H-----HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID 86 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCC-------C-----ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC
Confidence 4689999999999988776433 1 148999999999999999999999864321 00 0
Q ss_pred eecCCccccCCCCccccCCCcccc-----ccc-----cccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHH
Q 001355 760 VDVSSEQRVSQPNSIFDCQNIDFC-----DCK-----LRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSL 825 (1093)
Q Consensus 760 id~s~~~~~~~~~si~~~~~l~G~-----~~g-----~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~L 825 (1093)
-+|.........+ .+.++-- +.+ -++.+.+..+.+.+.. ..+.||+|||+|. ++...+|.|
T Consensus 87 ~~c~~c~~i~~~~----HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~-m~~~aanaL 161 (365)
T PRK07471 87 PDHPVARRIAAGA----HGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADE-MNANAANAL 161 (365)
T ss_pred CCChHHHHHHccC----CCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHh-cCHHHHHHH
Confidence 0111110000000 0111100 011 0111222333333332 3456999999999 999999999
Q ss_pred hhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 826 TKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 826 l~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
++.+|+-. .+++||++|+.
T Consensus 162 LK~LEepp-----------~~~~~IL~t~~ 180 (365)
T PRK07471 162 LKVLEEPP-----------ARSLFLLVSHA 180 (365)
T ss_pred HHHHhcCC-----------CCeEEEEEECC
Confidence 99999632 35678888774
No 144
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.65 E-value=3.7e-07 Score=104.26 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=68.1
Q ss_pred CCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhH-HHHHHH-
Q 001355 724 KRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDY-IYQEFR- 801 (1093)
Q Consensus 724 k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~-l~eal~- 801 (1093)
+.+.-++|+||+|||||.+|++||..+ ..+|+.++.++.. .+++|..+. .+.. +..|-.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~-----------sk~vGEsEk-----~IR~~F~~A~~~ 206 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELE-----------SENAGEPGK-----LIRQRYREAADI 206 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhh-----------cCcCCcHHH-----HHHHHHHHHHHH
Confidence 344679999999999999999999998 5678888887532 234443322 2223 333321
Q ss_pred ---hCCceEEEEcccccccCH----------HH-HHHHhhhhcCCeEecCCC---eEeecCCcEEEEecCC
Q 001355 802 ---SKPYSVVFLEDLDKAADP----------IV-QSSLTKAISTGKFTDSYG---RDVSISGMIFVATSTI 855 (1093)
Q Consensus 802 ---~~p~~VI~LDEVDkiad~----------~v-q~~Ll~aLe~Gr~~d~~G---~~V~l~naI~IlTSN~ 855 (1093)
+...+||||||||.|+.. .+ ...|+..++.=......| ..-...+++||.|||-
T Consensus 207 a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNr 277 (413)
T PLN00020 207 IKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGND 277 (413)
T ss_pred hhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCC
Confidence 233489999999985531 11 245666666311000000 0112356788999884
No 145
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.64 E-value=5.2e-07 Score=113.15 Aligned_cols=156 Identities=12% Similarity=0.040 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcC----CCCCC----CCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGN----GRDVG----SNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN 753 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~----~~~~~----~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs 753 (1093)
-++.|.+.+...|+|+++++.+|+-++....... ..+.+ ..-+.+.++||.|++|+||+.+|+.+|+...+.
T Consensus 440 i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~ 519 (915)
T PTZ00111 440 IYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRS 519 (915)
T ss_pred HHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCcc
Confidence 3456667777889999999988866654331100 00101 112467899999999999999999999865332
Q ss_pred ----CCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhh
Q 001355 754 ----KGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAI 829 (1093)
Q Consensus 754 ----~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aL 829 (1093)
..++..++|..... +.+...| . . ..-.+++.....++++|||+++ +++..|..|+++|
T Consensus 520 ~ytsG~~~s~vgLTa~~~------------~~d~~tG---~-~-~le~GaLvlAdgGtL~IDEidk-ms~~~Q~aLlEaM 581 (915)
T PTZ00111 520 IYTSGKSSSSVGLTASIK------------FNESDNG---R-A-MIQPGAVVLANGGVCCIDELDK-CHNESRLSLYEVM 581 (915)
T ss_pred ccCCCCCCccccccchhh------------hcccccC---c-c-cccCCcEEEcCCCeEEecchhh-CCHHHHHHHHHHH
Confidence 24455555543210 0000000 0 0 0012334445668999999999 9999999999999
Q ss_pred cCCeEecCC-CeEeec-CCcEEEEecCC
Q 001355 830 STGKFTDSY-GRDVSI-SGMIFVATSTI 855 (1093)
Q Consensus 830 e~Gr~~d~~-G~~V~l-~naI~IlTSN~ 855 (1093)
+++.++-.+ |-...+ .++.||+++|.
T Consensus 582 EqqtIsI~KaGi~~tL~ar~rVIAAaNP 609 (915)
T PTZ00111 582 EQQTVTIAKAGIVATLKAETAILASCNP 609 (915)
T ss_pred hCCEEEEecCCcceecCCCeEEEEEcCC
Confidence 999886433 422222 46788999995
No 146
>PRK08727 hypothetical protein; Validated
Probab=98.64 E-value=1.1e-06 Score=96.09 Aligned_cols=68 Identities=13% Similarity=0.026 Sum_probs=46.7
Q ss_pred hHHHhhccc--cccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHHHHHH
Q 001355 975 LEDFFDQTD--AIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENVVLRS 1052 (1093)
Q Consensus 975 ~~efl~rId--~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~vl~~~ 1052 (1093)
.+++..|+. ..+.|+|++.+++.+++...... . .+.++++++++|+...- ++. |.+...++.+...+
T Consensus 144 ~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~-------~--~l~l~~e~~~~La~~~~-rd~-r~~l~~L~~l~~~~ 212 (233)
T PRK08727 144 LPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR-------R--GLALDEAAIDWLLTHGE-REL-AGLVALLDRLDRES 212 (233)
T ss_pred hHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHhCC-CCH-HHHHHHHHHHHHHH
Confidence 456666753 57899999999999999874433 1 37899999999998733 333 34555566554333
Q ss_pred H
Q 001355 1053 F 1053 (1093)
Q Consensus 1053 l 1053 (1093)
+
T Consensus 213 ~ 213 (233)
T PRK08727 213 L 213 (233)
T ss_pred H
Confidence 3
No 147
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.63 E-value=1.1e-07 Score=98.38 Aligned_cols=132 Identities=22% Similarity=0.221 Sum_probs=79.1
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCce-EEeecCCccccCCCCcc
Q 001355 696 WQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKL-IHVDVSSEQRVSQPNSI 774 (1093)
Q Consensus 696 GQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~f-v~id~s~~~~~~~~~si 774 (1093)
||++++..+...+...+. .-.+||+||+|+||+.+|+++|+.+++....- .+-.|...........
T Consensus 1 gq~~~~~~L~~~~~~~~l------------~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~- 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRL------------PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH- 67 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C-
T ss_pred CcHHHHHHHHHHHHcCCc------------ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC-
Confidence 899888888887765433 12589999999999999999999998875431 1111111000000000
Q ss_pred ccCCC--ccccccc--cccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCC
Q 001355 775 FDCQN--IDFCDCK--LRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISG 846 (1093)
Q Consensus 775 ~~~~~--l~G~~~g--~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~n 846 (1093)
+. ++..... ..+.+.+..+.+.+.. .++.|++|||+|+ ++.+.|++|++.||+- -.+
T Consensus 68 ---~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~-l~~~a~NaLLK~LEep-----------p~~ 132 (162)
T PF13177_consen 68 ---PDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADK-LTEEAQNALLKTLEEP-----------PEN 132 (162)
T ss_dssp ---TTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGG-S-HHHHHHHHHHHHST-----------TTT
T ss_pred ---cceEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhh-hhHHHHHHHHHHhcCC-----------CCC
Confidence 11 1111111 1222333444444433 3566999999999 9999999999999973 257
Q ss_pred cEEEEecCC
Q 001355 847 MIFVATSTI 855 (1093)
Q Consensus 847 aI~IlTSN~ 855 (1093)
++||++|+-
T Consensus 133 ~~fiL~t~~ 141 (162)
T PF13177_consen 133 TYFILITNN 141 (162)
T ss_dssp EEEEEEES-
T ss_pred EEEEEEECC
Confidence 889998874
No 148
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=4.1e-07 Score=103.74 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=79.7
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..|+||+.++..+...+...+. + -.+||+||.|+||+.+|+++|+.+++....-.+-|+..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~-------~-----ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~------- 64 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRF-------S-----HAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIE------- 64 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCC-------C-----ceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEE-------
Confidence 5689999999988887743321 1 25899999999999999999999875422100111100
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCc
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGM 847 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~na 847 (1093)
+...+....+...+..+.+.+... .+.|++||++|+ ++...+|.|++.||+- -.++
T Consensus 65 --------~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~-m~~~a~naLLK~LEep-----------p~~t 124 (313)
T PRK05564 65 --------FKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEK-MTEQAQNAFLKTIEEP-----------PKGV 124 (313)
T ss_pred --------eccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhh-cCHHHHHHHHHHhcCC-----------CCCe
Confidence 000000111112233333333333 446999999999 9999999999999962 2467
Q ss_pred EEEEecC
Q 001355 848 IFVATST 854 (1093)
Q Consensus 848 I~IlTSN 854 (1093)
+||++|+
T Consensus 125 ~~il~~~ 131 (313)
T PRK05564 125 FIILLCE 131 (313)
T ss_pred EEEEEeC
Confidence 7888775
No 149
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.62 E-value=3.3e-07 Score=117.02 Aligned_cols=122 Identities=18% Similarity=0.240 Sum_probs=75.3
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCC-------CceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNK-------GKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~-------~~fv~id~s~ 764 (1093)
+.|+||++.+..+...+.+.+. ..++|+||+|||||.+|+.||+.+.... ..++.+|++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~-------------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~ 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ-------------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc-------------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh
Confidence 4689999877766665533211 1479999999999999999999874322 2355666654
Q ss_pred ccccCCCCccccCCCccccccccccc--hhhhHHHHHHHh-CCceEEEEcccccccC-------HHHHHHHhhhhcCCeE
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGK--VLVDYIYQEFRS-KPYSVVFLEDLDKAAD-------PIVQSSLTKAISTGKF 834 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~--~~~~~l~eal~~-~p~~VI~LDEVDkiad-------~~vq~~Ll~aLe~Gr~ 834 (1093)
... | ..|+|. ..+..+.+.+.+ ....|||||||+.|.. .+.-+.|+.+++.|.+
T Consensus 254 l~a--------------g--~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l 317 (852)
T TIGR03345 254 LQA--------------G--ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGEL 317 (852)
T ss_pred hhc--------------c--cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCe
Confidence 210 0 112221 112223333332 3457999999998321 2344578889987754
Q ss_pred ecCCCeEeecCCcEEEEecCC
Q 001355 835 TDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 835 ~d~~G~~V~l~naI~IlTSN~ 855 (1093)
+ +|.+|+.
T Consensus 318 ~-------------~IgaTT~ 325 (852)
T TIGR03345 318 R-------------TIAATTW 325 (852)
T ss_pred E-------------EEEecCH
Confidence 4 7888874
No 150
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.61 E-value=1.4e-06 Score=97.88 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=54.5
Q ss_pred cChHHHhhccccccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHHHHHH
Q 001355 973 AWLEDFFDQTDAIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENVVLRS 1052 (1093)
Q Consensus 973 ~~~~efl~rId~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~vl~~~ 1052 (1093)
....|||+|+ .+|.-+|++.+++++|+...... -.+.++++++++|..-+-...+ +|.-+.|.|+
T Consensus 344 GIP~DlLDRl-lII~t~py~~~EireIi~iRa~e---------e~i~l~~~Ale~L~~ig~etSL-----RYa~qLL~pa 408 (450)
T COG1224 344 GIPLDLLDRL-LIISTRPYSREEIREIIRIRAKE---------EDIELSDDALEYLTDIGEETSL-----RYAVQLLTPA 408 (450)
T ss_pred CCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhh---------hccccCHHHHHHHHhhchhhhH-----HHHHHhccHH
Confidence 5678999999 48999999999999999764432 2378999999999876443222 4555677777
Q ss_pred HHHHHhhcC
Q 001355 1053 FYEVRRKHH 1061 (1093)
Q Consensus 1053 l~e~~~~~~ 1061 (1093)
..-++.+.+
T Consensus 409 ~iiA~~rg~ 417 (450)
T COG1224 409 SIIAKRRGS 417 (450)
T ss_pred HHHHHHhCC
Confidence 655655544
No 151
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.60 E-value=2.3e-07 Score=114.16 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=73.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccc---cc-cchhhhHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCK---LR-GKVLVDYIYQEFRS 802 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g---~~-g~~~~~~l~eal~~ 802 (1093)
..+||.|++|+|||.+|++||..+-+ ..+|+.+.+.... ..++|...- +. |.. ..-.+.+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~t~-----------d~L~G~idl~~~~~~g~~--~~~~G~L~~ 82 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPP-IMPFVELPLGVTE-----------DRLIGGIDVEESLAGGQR--VTQPGLLDE 82 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCcccch-----------hhcccchhhhhhhhcCcc--cCCCCCeee
Confidence 47999999999999999999998743 4468888754211 122222100 00 000 000122334
Q ss_pred CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCC-CeEeec-CCcEEEEecCC
Q 001355 803 KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY-GRDVSI-SGMIFVATSTI 855 (1093)
Q Consensus 803 ~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~-G~~V~l-~naI~IlTSN~ 855 (1093)
..++|||||||++ +++.+|..|+++|++|.++-.. |..... .+..+|+|+|.
T Consensus 83 A~~GvL~lDEi~r-l~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np 136 (589)
T TIGR02031 83 APRGVLYVDMANL-LDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDP 136 (589)
T ss_pred CCCCcEeccchhh-CCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCC
Confidence 4568999999999 9999999999999999865322 322222 35667887774
No 152
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.60 E-value=8.3e-07 Score=93.57 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=65.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCc-----eEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGK-----LIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS 802 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~-----fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~ 802 (1093)
.+||+||+|+|||.+|+.+++.+.+.... ..+.+|.........+. .++....+-.+.+.+..+.+.+..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-----~~~~~~~~~~~~~~i~~i~~~~~~ 90 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-----HRLEPEGQSIKVDQVRELVEFLSR 90 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-----EEeccccCcCCHHHHHHHHHHHcc
Confidence 69999999999999999999999764211 00111111000000000 000000111222333334454444
Q ss_pred ----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecC
Q 001355 803 ----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATST 854 (1093)
Q Consensus 803 ----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN 854 (1093)
.++.||+|||+|+ ++...++.|+..||+.. .+++||++++
T Consensus 91 ~~~~~~~kviiide~~~-l~~~~~~~Ll~~le~~~-----------~~~~~il~~~ 134 (188)
T TIGR00678 91 TPQESGRRVVIIEDAER-MNEAAANALLKTLEEPP-----------PNTLFILITP 134 (188)
T ss_pred CcccCCeEEEEEechhh-hCHHHHHHHHHHhcCCC-----------CCeEEEEEEC
Confidence 3456999999999 99999999999998631 3567888776
No 153
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.59 E-value=2.7e-08 Score=98.14 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=62.7
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccc-hhhhHHHHHHHhCCce
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGK-VLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~-~~~~~l~eal~~~p~~ 806 (1093)
++|+.|++|+|||.+|++||+.+ ...|.+|.+...- . . ..+.|... |... .......+.+- ..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~RIq~tpdl--l-P------sDi~G~~v-~~~~~~~f~~~~GPif---~~ 64 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKRIQFTPDL--L-P------SDILGFPV-YDQETGEFEFRPGPIF---TN 64 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEEEE--TT-----H------HHHHEEEE-EETTTTEEEEEE-TT----SS
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeEEEecCCC--C-c------ccceeeee-eccCCCeeEeecChhh---hc
Confidence 38999999999999999999998 4567788775310 0 0 11112110 0000 00000001111 24
Q ss_pred EEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCc-EEEEecCC
Q 001355 807 VVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGM-IFVATSTI 855 (1093)
Q Consensus 807 VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~na-I~IlTSN~ 855 (1093)
|+|+|||.+ +.+.+|.+|+++|++++++. .|.+..+.+- +||+|-|-
T Consensus 65 ill~DEiNr-appktQsAlLeam~Er~Vt~-~g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 65 ILLADEINR-APPKTQSALLEAMEERQVTI-DGQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp EEEEETGGG-S-HHHHHHHHHHHHHSEEEE-TTEEEE--SS-EEEEEE-T
T ss_pred eeeeccccc-CCHHHHHHHHHHHHcCeEEe-CCEEEECCCcEEEEEecCc
Confidence 999999999 99999999999999999985 5678888774 45556674
No 154
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.58 E-value=7.3e-08 Score=102.63 Aligned_cols=141 Identities=22% Similarity=0.211 Sum_probs=79.5
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..|+||+.++.++.-+. +|. -.+||.||+|+|||++|++|+..+-.-... -.+.... -
T Consensus 3 ~dI~GQe~aKrAL~iAA----aG~-----------h~lLl~GppGtGKTmlA~~l~~lLP~l~~~-e~le~~~------i 60 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAA----AGG-----------HHLLLIGPPGTGKTMLARRLPSLLPPLTEE-EALEVSK------I 60 (206)
T ss_dssp CCSSSTHHHHHHHHHHH----HCC-------------EEEES-CCCTHHHHHHHHHHCS--CCEE-CCESS--------S
T ss_pred hhhcCcHHHHHHHHHHH----cCC-----------CCeEEECCCCCCHHHHHHHHHHhCCCCchH-HHhhhcc------c
Confidence 57999999987766544 332 149999999999999999999877321110 0001111 0
Q ss_pred Ccccc---CCCccccc-----------cccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecC
Q 001355 772 NSIFD---CQNIDFCD-----------CKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDS 837 (1093)
Q Consensus 772 ~si~~---~~~l~G~~-----------~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~ 837 (1093)
.++.+ ...+.... .+.+|... ..--+++....++|+||||+-. .++.+.+.|++.+++|+++-.
T Consensus 61 ~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~-~~~PGeislAh~GVLflDE~~e-f~~~vld~Lr~ple~g~v~i~ 138 (206)
T PF01078_consen 61 YSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGR-PPRPGEISLAHRGVLFLDELNE-FDRSVLDALRQPLEDGEVTIS 138 (206)
T ss_dssp -TT---S---EEEE---EEEE-TT--HHHHHEEGG-GEEE-CGGGGTTSEEEECETTT-S-HHHHHHHHHHHHHSBEEEE
T ss_pred cccccCCCCCceecCCCcccCCCCcCHHHHhCCCc-CCCcCHHHHhcCCEEEechhhh-cCHHHHHHHHHHHHCCeEEEE
Confidence 01110 00000000 00111100 1112345666788999999999 999999999999999988754
Q ss_pred C-C-eEeecCCcEEEEecCCC
Q 001355 838 Y-G-RDVSISGMIFVATSTIL 856 (1093)
Q Consensus 838 ~-G-~~V~l~naI~IlTSN~~ 856 (1093)
. | ....-.+-++|+|.|..
T Consensus 139 R~~~~~~~Pa~f~lv~a~NPc 159 (206)
T PF01078_consen 139 RAGGSVTYPARFLLVAAMNPC 159 (206)
T ss_dssp ETTEEEEEB--EEEEEEE-S-
T ss_pred ECCceEEEecccEEEEEeccc
Confidence 4 3 33444577899999974
No 155
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.8e-07 Score=110.42 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=70.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
-+||+||||||||.||+++|..- ..+|++|-..+.- ..|+|..+ ..+..++...+.+-.+|
T Consensus 547 GvLL~GPPGCGKTLlAKAVANEa---g~NFisVKGPELl-----------NkYVGESE-----rAVR~vFqRAR~saPCV 607 (802)
T KOG0733|consen 547 GVLLCGPPGCGKTLLAKAVANEA---GANFISVKGPELL-----------NKYVGESE-----RAVRQVFQRARASAPCV 607 (802)
T ss_pred ceEEeCCCCccHHHHHHHHhhhc---cCceEeecCHHHH-----------HHHhhhHH-----HHHHHHHHHhhcCCCeE
Confidence 49999999999999999999865 7789887655421 23444332 23445555556666699
Q ss_pred EEEccccccc----------CHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 808 VFLEDLDKAA----------DPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 808 I~LDEVDkia----------d~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
|||||||.++ ...+.|.||--|+-.. .-.++.||.+||.
T Consensus 608 IFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~---------~R~gV~viaATNR 656 (802)
T KOG0733|consen 608 IFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLE---------ERRGVYVIAATNR 656 (802)
T ss_pred EEecchhhcCcccCCCCchhHHHHHHHHHHHhcccc---------cccceEEEeecCC
Confidence 9999999733 2467888888887332 1246778999996
No 156
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=4.9e-07 Score=105.04 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=89.5
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc--eEEeecCCccccC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK--LIHVDVSSEQRVS 769 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--fv~id~s~~~~~~ 769 (1093)
+++++.++.+..++..+.....|..+ ..++++|++|||||.+++.+.+.+...... +++|||-.+....
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p---------~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERP---------SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCC---------ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 44788899999999988777664432 249999999999999999999988765332 6999998754322
Q ss_pred CC-CccccCCCccc-cccccccchhhhHHHHHHHh-CCceEEEEcccccccCH--HHHHHHhhhhcCCeEecCCCeEeec
Q 001355 770 QP-NSIFDCQNIDF-CDCKLRGKVLVDYIYQEFRS-KPYSVVFLEDLDKAADP--IVQSSLTKAISTGKFTDSYGRDVSI 844 (1093)
Q Consensus 770 ~~-~si~~~~~l~G-~~~g~~g~~~~~~l~eal~~-~p~~VI~LDEVDkiad~--~vq~~Ll~aLe~Gr~~d~~G~~V~l 844 (1093)
.. ..+. ..+.. ...|.........+.+.+.. ...-||+|||+|.+.+. ++...|.++-+.+ -
T Consensus 88 ~i~~~i~--~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~-----------~ 154 (366)
T COG1474 88 QVLSKIL--NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN-----------K 154 (366)
T ss_pred HHHHHHH--HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc-----------c
Confidence 10 0000 00100 11122333455677777766 34458999999994444 2444444444433 2
Q ss_pred CCcEEEEecCC
Q 001355 845 SGMIFVATSTI 855 (1093)
Q Consensus 845 ~naI~IlTSN~ 855 (1093)
.+.++|+.+|.
T Consensus 155 ~~v~vi~i~n~ 165 (366)
T COG1474 155 VKVSIIAVSND 165 (366)
T ss_pred eeEEEEEEecc
Confidence 34567887773
No 157
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.56 E-value=6e-07 Score=105.17 Aligned_cols=143 Identities=17% Similarity=0.119 Sum_probs=84.4
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC--CCceEEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN--KGKLIHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs--~~~fv~id~s~~~~~ 768 (1093)
.+.++|.++.+..|...+.....+... ..++++||+|+|||.+++.+++.+... .-.+++++|......
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~---------~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRP---------LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCC---------CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 466889999999999888766442221 258999999999999999999877443 245788888753211
Q ss_pred CC-CCccccCCCcccccccccc---chhhhHHHHHHHhC-CceEEEEcccccccC----HHHHHHHhhhhcCCeEecCCC
Q 001355 769 SQ-PNSIFDCQNIDFCDCKLRG---KVLVDYIYQEFRSK-PYSVVFLEDLDKAAD----PIVQSSLTKAISTGKFTDSYG 839 (1093)
Q Consensus 769 ~~-~~si~~~~~l~G~~~g~~g---~~~~~~l~eal~~~-p~~VI~LDEVDkiad----~~vq~~Ll~aLe~Gr~~d~~G 839 (1093)
.. ...+. ..+.+.....+| ....+.+.+.+.+. ...||+|||+|. +. .+....|++.++.- .+
T Consensus 100 ~~~~~~i~--~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~-l~~~~~~~~l~~l~~~~~~~-----~~ 171 (394)
T PRK00411 100 YAIFSEIA--RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINY-LFEKEGNDVLYSLLRAHEEY-----PG 171 (394)
T ss_pred HHHHHHHH--HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhH-hhccCCchHHHHHHHhhhcc-----CC
Confidence 00 00000 011111111122 12335555555543 446899999999 53 44555566555431 11
Q ss_pred eEeecCCcEEEEecCC
Q 001355 840 RDVSISGMIFVATSTI 855 (1093)
Q Consensus 840 ~~V~l~naI~IlTSN~ 855 (1093)
.+..+|+++|.
T Consensus 172 -----~~v~vI~i~~~ 182 (394)
T PRK00411 172 -----ARIGVIGISSD 182 (394)
T ss_pred -----CeEEEEEEECC
Confidence 24557887773
No 158
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=4.4e-07 Score=104.31 Aligned_cols=136 Identities=20% Similarity=0.193 Sum_probs=82.4
Q ss_pred cccCc-cHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCC--ceEEeecCCcccc
Q 001355 692 EKVGW-QDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKG--KLIHVDVSSEQRV 768 (1093)
Q Consensus 692 e~ViG-Qdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~--~fv~id~s~~~~~ 768 (1093)
+.|+| |+.++..+...+...+. .-.+||+||+|+||+.+|+.+|+.+++... ...+-.|......
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~l------------~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~ 72 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNRL------------SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRI 72 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCC------------CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHH
Confidence 45677 88888888877754322 125899999999999999999999976531 1111112211100
Q ss_pred CCCCccccCCCc--cccccccccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 769 SQPNSIFDCQNI--DFCDCKLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 769 ~~~~si~~~~~l--~G~~~g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
...+. +.+ +..+..-.+.+.+..+.+.+.. ..+.|++|||+|+ ++...+|.|++.||+-
T Consensus 73 ~~~~h----pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~-~~~~a~NaLLK~LEEP---------- 137 (329)
T PRK08058 73 DSGNH----PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADK-MTASAANSLLKFLEEP---------- 137 (329)
T ss_pred hcCCC----CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhh-hCHHHHHHHHHHhcCC----------
Confidence 00000 111 1111011122223334444432 3456999999999 9999999999999962
Q ss_pred ecCCcEEEEecCC
Q 001355 843 SISGMIFVATSTI 855 (1093)
Q Consensus 843 ~l~naI~IlTSN~ 855 (1093)
-.+++||++|+.
T Consensus 138 -p~~~~~Il~t~~ 149 (329)
T PRK08058 138 -SGGTTAILLTEN 149 (329)
T ss_pred -CCCceEEEEeCC
Confidence 146778888863
No 159
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=4.9e-07 Score=105.59 Aligned_cols=140 Identities=19% Similarity=0.158 Sum_probs=84.3
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCC-CceEEee------cCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNK-GKLIHVD------VSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~-~~fv~id------~s~ 764 (1093)
+.|+||+.|.+++--+ .+|.. .+||+||||+|||++|+.+...+-.-. ..++.+. -..
T Consensus 179 ~DV~GQ~~AKrAleiA----AAGgH-----------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~ 243 (490)
T COG0606 179 KDVKGQEQAKRALEIA----AAGGH-----------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDL 243 (490)
T ss_pred hhhcCcHHHHHHHHHH----HhcCC-----------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccc
Confidence 4689999998765543 33321 499999999999999998876652211 1111111 000
Q ss_pred cc--------ccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEec
Q 001355 765 EQ--------RVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTD 836 (1093)
Q Consensus 765 ~~--------~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d 836 (1093)
.. .+-..|+......++|.- .....+.+....++|+||||+-. ....+.+.|.+-||+|+++-
T Consensus 244 ~~~~~~~~~rPFr~PHHsaS~~aLvGGG--------~~p~PGeIsLAH~GVLFLDElpe-f~~~iLe~LR~PLE~g~i~I 314 (490)
T COG0606 244 HEGCPLKIHRPFRAPHHSASLAALVGGG--------GVPRPGEISLAHNGVLFLDELPE-FKRSILEALREPLENGKIII 314 (490)
T ss_pred cccCccceeCCccCCCccchHHHHhCCC--------CCCCCCceeeecCCEEEeeccch-hhHHHHHHHhCccccCcEEE
Confidence 00 000001000001122211 11223455666788999999999 99999999999999999876
Q ss_pred CC--CeEeecCCcEEEEecCC
Q 001355 837 SY--GRDVSISGMIFVATSTI 855 (1093)
Q Consensus 837 ~~--G~~V~l~naI~IlTSN~ 855 (1093)
+. ++.....+-++|+++|.
T Consensus 315 sRa~~~v~ypa~Fqlv~AmNp 335 (490)
T COG0606 315 SRAGSKVTYPARFQLVAAMNP 335 (490)
T ss_pred EEcCCeeEEeeeeEEhhhcCC
Confidence 54 34444456667788886
No 160
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.53 E-value=5.5e-07 Score=102.32 Aligned_cols=113 Identities=14% Similarity=0.123 Sum_probs=79.2
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccc-----cccccchh-hhHHHHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCD-----CKLRGKVL-VDYIYQEFR 801 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~-----~g~~g~~~-~~~l~eal~ 801 (1093)
.++|.||+|+|||.+|+.||+.+ +.++++|++...... ..++|.. .|.....+ -+.+..+.+
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~---------~DliG~~~~~l~~g~~~~~f~~GpL~~A~~ 133 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSR---------IDLVGKDAIVLKDGKQITEFRDGILPWALQ 133 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCCh---------hhcCCCceeeccCCcceeEEecCcchhHHh
Confidence 49999999999999999999998 678999998863211 1233321 11000011 134555554
Q ss_pred hCCceEEEEcccccccCHHHHHHHhhhhc-CCeEecC-CCeEeecC-CcEEEEecCC
Q 001355 802 SKPYSVVFLEDLDKAADPIVQSSLTKAIS-TGKFTDS-YGRDVSIS-GMIFVATSTI 855 (1093)
Q Consensus 802 ~~p~~VI~LDEVDkiad~~vq~~Ll~aLe-~Gr~~d~-~G~~V~l~-naI~IlTSN~ 855 (1093)
. +.++|||||+. ++++++..|..+|| +|.++.. .++.+... +-+||+|.|.
T Consensus 134 ~--g~illlDEin~-a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np 187 (327)
T TIGR01650 134 H--NVALCFDEYDA-GRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT 187 (327)
T ss_pred C--CeEEEechhhc-cCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC
Confidence 3 36899999999 99999999999999 4677653 35666444 6779999995
No 161
>PRK05642 DNA replication initiation factor; Validated
Probab=98.51 E-value=2.3e-06 Score=93.70 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=52.2
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
+++|+||+|+|||+++++++..+.......+++++..... ....+.+.++.. .+
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~------------------------~~~~~~~~~~~~--d~ 100 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD------------------------RGPELLDNLEQY--EL 100 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh------------------------hhHHHHHhhhhC--CE
Confidence 6899999999999999999987754445566666543210 001233334433 48
Q ss_pred EEEccccccc-CHHHHHHHhhhhcC
Q 001355 808 VFLEDLDKAA-DPIVQSSLTKAIST 831 (1093)
Q Consensus 808 I~LDEVDkia-d~~vq~~Ll~aLe~ 831 (1093)
++||||+.+. .+..+..|..+++.
T Consensus 101 LiiDDi~~~~~~~~~~~~Lf~l~n~ 125 (234)
T PRK05642 101 VCLDDLDVIAGKADWEEALFHLFNR 125 (234)
T ss_pred EEEechhhhcCChHHHHHHHHHHHH
Confidence 9999998722 35667778888863
No 162
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.51 E-value=2.4e-07 Score=100.94 Aligned_cols=130 Identities=17% Similarity=0.178 Sum_probs=89.7
Q ss_pred HHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHh---ccCCCceEEeecCC
Q 001355 688 IALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIV---FGNKGKLIHVDVSS 764 (1093)
Q Consensus 688 ~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~l---fgs~~~fv~id~s~ 764 (1093)
..|+..|--...+.....+.|.+..... ..++|+.||+|.||+.+|+.|-+.- ..-..+||.+||..
T Consensus 180 ~~lksgiatrnp~fnrmieqierva~rs----------r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncat 249 (531)
T COG4650 180 DFLKSGIATRNPHFNRMIEQIERVAIRS----------RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCAT 249 (531)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHhhc----------cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeee
Confidence 3444555555555566666666554311 1369999999999999999776532 12256899999997
Q ss_pred ccccCCCCccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEec
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTD 836 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d 836 (1093)
.-.... ...+||...| |.|.. ..-.+.++...++.+|||||.. +..+-|..|+++||+.+|..
T Consensus 250 lrgd~a------msalfghvkgaftga~--~~r~gllrsadggmlfldeige-lgadeqamllkaieekrf~p 313 (531)
T COG4650 250 LRGDTA------MSALFGHVKGAFTGAR--ESREGLLRSADGGMLFLDEIGE-LGADEQAMLLKAIEEKRFYP 313 (531)
T ss_pred ecCchH------HHHHHhhhccccccch--hhhhhhhccCCCceEehHhhhh-cCccHHHHHHHHHHhhccCC
Confidence 432111 1356777665 44432 2234667788899999999999 99999999999999988764
No 163
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=4.8e-07 Score=97.67 Aligned_cols=129 Identities=22% Similarity=0.244 Sum_probs=88.1
Q ss_pred cCccHHHHHHHHHHHHH--------HHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc
Q 001355 694 VGWQDEAICTISQAVSR--------WRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE 765 (1093)
Q Consensus 694 ViGQdeai~~Ia~aI~~--------~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~ 765 (1093)
|.|-++.|+.|.+.+.. ...|+..|+ -+|++||+|+|||.+||++|..- ..-||++=.+..
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppk--------gvllygppgtgktl~aravanrt---dacfirvigsel 247 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPK--------GVLLYGPPGTGKTLCARAVANRT---DACFIRVIGSEL 247 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCC--------ceEEeCCCCCchhHHHHHHhccc---CceEEeehhHHH
Confidence 45555555555555432 235565552 28999999999999999999754 667887654432
Q ss_pred cccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccc----------cCHHHHHHHhhhhcCCeEe
Q 001355 766 QRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKA----------ADPIVQSSLTKAISTGKFT 835 (1093)
Q Consensus 766 ~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDki----------ad~~vq~~Ll~aLe~Gr~~ 835 (1093)
- ++|+|. |...+..+++..+.+.-++|||||||.| .|.++|..++++|..=.-.
T Consensus 248 v-----------qkyvge-----garmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgf 311 (435)
T KOG0729|consen 248 V-----------QKYVGE-----GARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGF 311 (435)
T ss_pred H-----------HHHhhh-----hHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCC
Confidence 1 234432 3345677888888888899999999852 2689999999999754334
Q ss_pred cCCCeEeecCCcEEEEecCC
Q 001355 836 DSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 836 d~~G~~V~l~naI~IlTSN~ 855 (1093)
|..| |.-+.++||.
T Consensus 312 dprg------nikvlmatnr 325 (435)
T KOG0729|consen 312 DPRG------NIKVLMATNR 325 (435)
T ss_pred CCCC------CeEEEeecCC
Confidence 5444 5558888985
No 164
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.45 E-value=9.4e-07 Score=100.23 Aligned_cols=136 Identities=17% Similarity=0.111 Sum_probs=80.0
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEee-----cCCccc
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD-----VSSEQR 767 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id-----~s~~~~ 767 (1093)
.++++++++..+...+..... .|+ .+||+||+|+|||.+|.+||+.+++......... |.....
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~------~~h-----alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR------LPH-----ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC------CCc-----eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 356666666666555543321 111 4999999999999999999999987653211110 000000
Q ss_pred cCCCCccccCCCcccccccc--ccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeE
Q 001355 768 VSQPNSIFDCQNIDFCDCKL--RGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRD 841 (1093)
Q Consensus 768 ~~~~~si~~~~~l~G~~~g~--~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~ 841 (1093)
... ..+. .+...+... ...+.+..+.+..... ++.||+|||+|. ++.+.++.|++.+|+.
T Consensus 71 ~~~-~d~l---el~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~-mt~~A~nallk~lEep--------- 136 (325)
T COG0470 71 GNH-PDFL---ELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADK-LTEDAANALLKTLEEP--------- 136 (325)
T ss_pred cCC-CceE---EecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHH-HhHHHHHHHHHHhccC---------
Confidence 000 0000 000000110 1122334444443333 467999999999 9999999999999963
Q ss_pred eecCCcEEEEecCC
Q 001355 842 VSISGMIFVATSTI 855 (1093)
Q Consensus 842 V~l~naI~IlTSN~ 855 (1093)
-.+++||++||.
T Consensus 137 --~~~~~~il~~n~ 148 (325)
T COG0470 137 --PKNTRFILITND 148 (325)
T ss_pred --CCCeEEEEEcCC
Confidence 257889999994
No 165
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1.4e-06 Score=93.91 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=68.3
Q ss_pred ccCccHHHHHHHHHHHHHH--------HhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 693 KVGWQDEAICTISQAVSRW--------RIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~--------rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.|.|-+..|.++.++|.-. ..|+..|+ -+|+|||||+|||.|||+-|..- +.-|+.+....
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPK--------GvLmYGPPGTGKTlmARAcAaqT---~aTFLKLAgPQ 240 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPK--------GVLMYGPPGTGKTLMARACAAQT---NATFLKLAGPQ 240 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCC--------ceEeeCCCCCcHHHHHHHHHHhc---cchHHHhcchH
Confidence 4677777777787777432 23444332 38999999999999999988654 33333222111
Q ss_pred ccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccc----------cCHHHHHHHhhhhcC
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKA----------ADPIVQSSLTKAIST 831 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDki----------ad~~vq~~Ll~aLe~ 831 (1093)
. + +.|+|. |...+...+...+++...||||||+|.| .|.++|..+++++..
T Consensus 241 L--------V---QMfIGd-----GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ 301 (424)
T KOG0652|consen 241 L--------V---QMFIGD-----GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 301 (424)
T ss_pred H--------H---hhhhcc-----hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh
Confidence 0 0 223332 1222222223334455589999999853 267899999988863
No 166
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.45 E-value=9.9e-07 Score=86.27 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=79.4
Q ss_pred CccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCcc
Q 001355 695 GWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSI 774 (1093)
Q Consensus 695 iGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si 774 (1093)
+|++.++..+...+... ...+++++||+|+|||.+++.+++.+......++.+++........
T Consensus 1 ~~~~~~~~~i~~~~~~~-------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~---- 63 (151)
T cd00009 1 VGQEEAIEALREALELP-------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLV---- 63 (151)
T ss_pred CchHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhH----
Confidence 35666666665554321 1136999999999999999999998876667788888765321000
Q ss_pred ccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecC
Q 001355 775 FDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATST 854 (1093)
Q Consensus 775 ~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN 854 (1093)
+. ...+.................+|+|||++. +....+..+.+.++...... ....+..+|+++|
T Consensus 64 -----~~----~~~~~~~~~~~~~~~~~~~~~~lilDe~~~-~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~ 128 (151)
T cd00009 64 -----VA----ELFGHFLVRLLFELAEKAKPGVLFIDEIDS-LSRGAQNALLRVLETLNDLR-----IDRENVRVIGATN 128 (151)
T ss_pred -----HH----HHhhhhhHhHHHHhhccCCCeEEEEeChhh-hhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecC
Confidence 00 000000000111122234557999999999 88888888998888643221 1224677888888
Q ss_pred C
Q 001355 855 I 855 (1093)
Q Consensus 855 ~ 855 (1093)
.
T Consensus 129 ~ 129 (151)
T cd00009 129 R 129 (151)
T ss_pred c
Confidence 4
No 167
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.45 E-value=1.2e-06 Score=110.12 Aligned_cols=128 Identities=17% Similarity=0.222 Sum_probs=79.3
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPN 772 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~ 772 (1093)
.++|.++.+..+...+.+.+ + ..++|+||+|||||.+|+.||..+.....++...++..+.-.. .
T Consensus 187 ~liGR~~ei~~~i~iL~r~~----~---------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~--~ 251 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR----K---------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI--G 251 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC----C---------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH--H
Confidence 58999988888887665521 1 1478999999999999999998765544444444444322100 0
Q ss_pred ccccCCCccccccccccc--hhhhHHHHHHHhCCceEEEEccccccc--------CHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 773 SIFDCQNIDFCDCKLRGK--VLVDYIYQEFRSKPYSVVFLEDLDKAA--------DPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 773 si~~~~~l~G~~~g~~g~--~~~~~l~eal~~~p~~VI~LDEVDkia--------d~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
.+ +.|. .|+|. .....+.+.+.+....|||||||+.|+ ..++.+.|..++..|++
T Consensus 252 ~l-----laG~--~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i-------- 316 (758)
T PRK11034 252 SL-----LAGT--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKI-------- 316 (758)
T ss_pred HH-----hccc--chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCe--------
Confidence 01 1111 23331 112334455556667899999999732 24566678888876653
Q ss_pred ecCCcEEEEecCC
Q 001355 843 SISGMIFVATSTI 855 (1093)
Q Consensus 843 ~l~naI~IlTSN~ 855 (1093)
.+|.+||.
T Consensus 317 -----~vIgATt~ 324 (758)
T PRK11034 317 -----RVIGSTTY 324 (758)
T ss_pred -----EEEecCCh
Confidence 37888874
No 168
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.43 E-value=2.6e-06 Score=111.81 Aligned_cols=118 Identities=11% Similarity=0.078 Sum_probs=69.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccC------CCCccccCC-----Ccccc------------c
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVS------QPNSIFDCQ-----NIDFC------------D 784 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~------~~~si~~~~-----~l~G~------------~ 784 (1093)
-+||+||+|||||++|++||... ..+|+.|.++..-... +..++.+.. ..+.. .
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~ 1708 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNAL 1708 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchh
Confidence 48999999999999999999876 7899999987632110 000000000 00000 0
Q ss_pred cc--cccc--hhhhHHHHHHHhCCceEEEEcccccccCHH-----HHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 785 CK--LRGK--VLVDYIYQEFRSKPYSVVFLEDLDKAADPI-----VQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 785 ~g--~~g~--~~~~~l~eal~~~p~~VI~LDEVDkiad~~-----vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.+ +.+. ..+..+.+..++...+||+|||||. +... ..+.|+..|+..... .+..++|||++||.
T Consensus 1709 ~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDa-L~~~ds~~ltL~qLLneLDg~~~~------~s~~~VIVIAATNR 1781 (2281)
T CHL00206 1709 TMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHD-LNVNESNYLSLGLLVNSLSRDCER------CSTRNILVIASTHI 1781 (2281)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhh-cCCCccceehHHHHHHHhcccccc------CCCCCEEEEEeCCC
Confidence 00 1111 1134455666667779999999999 5432 356666666532111 12357889999995
No 169
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.42 E-value=1.1e-05 Score=87.51 Aligned_cols=101 Identities=19% Similarity=0.190 Sum_probs=61.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhcc--CCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFG--NKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfg--s~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
+++++||+|+|||+|.++++..+.. .+..++++++..+.... ... ... .....+.+.++ ..
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~-----------~~~---~~~-~~~~~~~~~~~--~~ 98 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREF-----------ADA---LRD-GEIEEFKDRLR--SA 98 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHH-----------HHH---HHT-TSHHHHHHHHC--TS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHH-----------HHH---HHc-ccchhhhhhhh--cC
Confidence 6899999999999999999987754 24456777765422100 000 000 11123444444 34
Q ss_pred eEEEEcccccccCH-HHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 806 SVVFLEDLDKAADP-IVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 806 ~VI~LDEVDkiad~-~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.+|+||+|+.+.+. ..|..|..+++.-. -.+..+|+||+.
T Consensus 99 DlL~iDDi~~l~~~~~~q~~lf~l~n~~~----------~~~k~li~ts~~ 139 (219)
T PF00308_consen 99 DLLIIDDIQFLAGKQRTQEELFHLFNRLI----------ESGKQLILTSDR 139 (219)
T ss_dssp SEEEEETGGGGTTHHHHHHHHHHHHHHHH----------HTTSEEEEEESS
T ss_pred CEEEEecchhhcCchHHHHHHHHHHHHHH----------hhCCeEEEEeCC
Confidence 59999999994443 46888888886321 122346788874
No 170
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.41 E-value=3.3e-06 Score=99.80 Aligned_cols=87 Identities=16% Similarity=0.235 Sum_probs=54.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccC--CCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGN--KGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKP 804 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs--~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p 804 (1093)
.+++|+||+|+|||+++++++..+... ...++++++..+.. .+... + .....+.+.+.++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-----------~~~~~---~-~~~~~~~~~~~~~~-- 199 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-----------DFVNA---L-RNNKMEEFKEKYRS-- 199 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-----------HHHHH---H-HcCCHHHHHHHHHh--
Confidence 369999999999999999999988654 35567777654211 00000 0 00012334444443
Q ss_pred ceEEEEcccccccC-HHHHHHHhhhhc
Q 001355 805 YSVVFLEDLDKAAD-PIVQSSLTKAIS 830 (1093)
Q Consensus 805 ~~VI~LDEVDkiad-~~vq~~Ll~aLe 830 (1093)
..+|+||||+.+.. ...|..|+..++
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n 226 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFN 226 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHH
Confidence 35999999998333 345667777665
No 171
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.41 E-value=1.6e-06 Score=111.12 Aligned_cols=122 Identities=20% Similarity=0.301 Sum_probs=77.1
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC-------CCceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN-------KGKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs-------~~~fv~id~s~ 764 (1093)
+.|+||++.+..+...+.+... ..++|+||+|||||.+|+.||..+... +..++.+|++.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~-------------~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~ 244 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK-------------NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 244 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc-------------CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence 4589999877666665543211 147899999999999999999987532 34566666664
Q ss_pred ccccCCCCccccCCCccccccccccch--hhhHHHHHH-HhCCceEEEEcccccccC-------HHHHHHHhhhhcCCeE
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGKV--LVDYIYQEF-RSKPYSVVFLEDLDKAAD-------PIVQSSLTKAISTGKF 834 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~~--~~~~l~eal-~~~p~~VI~LDEVDkiad-------~~vq~~Ll~aLe~Gr~ 834 (1093)
... | ..|+|.- .+..+.+.+ +.....||||||++.|.. .+.++.|+.++++|.+
T Consensus 245 l~a--------------g--~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l 308 (857)
T PRK10865 245 LVA--------------G--AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGEL 308 (857)
T ss_pred hhh--------------c--cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCC
Confidence 210 1 1122211 122222332 223457999999998332 2478889999887654
Q ss_pred ecCCCeEeecCCcEEEEecCC
Q 001355 835 TDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 835 ~d~~G~~V~l~naI~IlTSN~ 855 (1093)
++|.+|+.
T Consensus 309 -------------~~IgaTt~ 316 (857)
T PRK10865 309 -------------HCVGATTL 316 (857)
T ss_pred -------------eEEEcCCC
Confidence 38888885
No 172
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.1e-06 Score=99.65 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=77.0
Q ss_pred ccCccHHHHHHHHHHHHHH------HhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcc
Q 001355 693 KVGWQDEAICTISQAVSRW------RIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQ 766 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~------rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~ 766 (1093)
.|.|-.+|+..|-++|.-. ..|+.+| .. -+|+.||||+|||+||+++|-.. .--|+.|..+...
T Consensus 213 DIagl~~AK~lL~EAVvlPi~mPe~F~GirrP--Wk-----gvLm~GPPGTGKTlLAKAvATEc---~tTFFNVSsstlt 282 (491)
T KOG0738|consen 213 DIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRP--WK-----GVLMVGPPGTGKTLLAKAVATEC---GTTFFNVSSSTLT 282 (491)
T ss_pred hhcchHHHHHHHHHHHhhhhhhHHHHhhcccc--cc-----eeeeeCCCCCcHHHHHHHHHHhh---cCeEEEechhhhh
Confidence 4778888988888887542 3566554 11 38999999999999999999765 3345444333221
Q ss_pred ccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc-----------CHHHHHHHhhhhc
Q 001355 767 RVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA-----------DPIVQSSLTKAIS 830 (1093)
Q Consensus 767 ~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia-----------d~~vq~~Ll~aLe 830 (1093)
.+|.|..+ ..+..|++..+-.-.++|||||||-|. +..+-..||.-|+
T Consensus 283 -----------SKwRGeSE-----KlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD 341 (491)
T KOG0738|consen 283 -----------SKWRGESE-----KLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD 341 (491)
T ss_pred -----------hhhccchH-----HHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh
Confidence 23333322 346788888887777999999999633 3467778888776
No 173
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.39 E-value=4.3e-06 Score=105.97 Aligned_cols=127 Identities=19% Similarity=0.197 Sum_probs=79.6
Q ss_pred ccCccHHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 693 KVGWQDEAICTISQAVSRWR--------IGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~r--------sg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.|.|.++++..|.+.|.... .|.. .+..++|+||+|||||++|++||..+ ..+|+.+++..
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~--------~~~giLL~GppGtGKT~laraia~~~---~~~~i~i~~~~ 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIE--------PPKGVLLYGPPGTGKTLLAKAVANEA---GAYFISINGPE 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCC--------CCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEecHH
Confidence 36788888888877765321 1221 12358999999999999999999987 45688887664
Q ss_pred ccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc----------CHHHHHHHhhhhcCCeE
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA----------DPIVQSSLTKAISTGKF 834 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia----------d~~vq~~Ll~aLe~Gr~ 834 (1093)
.. ..+.|... ..+..+.+....+..+||||||||.++ +..+++.|+..|+.-.
T Consensus 248 i~-----------~~~~g~~~-----~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~- 310 (733)
T TIGR01243 248 IM-----------SKYYGESE-----ERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK- 310 (733)
T ss_pred Hh-----------cccccHHH-----HHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc-
Confidence 21 11222111 123334444444555899999998732 2357778888886311
Q ss_pred ecCCCeEeecCCcEEEEecCC
Q 001355 835 TDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 835 ~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.-.+.++|.+||.
T Consensus 311 --------~~~~vivI~atn~ 323 (733)
T TIGR01243 311 --------GRGRVIVIGATNR 323 (733)
T ss_pred --------cCCCEEEEeecCC
Confidence 1124567778874
No 174
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=2.4e-06 Score=98.11 Aligned_cols=131 Identities=15% Similarity=0.114 Sum_probs=79.4
Q ss_pred cCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc--eEEeecCCccccCCC
Q 001355 694 VGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK--LIHVDVSSEQRVSQP 771 (1093)
Q Consensus 694 ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--fv~id~s~~~~~~~~ 771 (1093)
.+||......+... | +-+ -.+||+||+|+||+.+|+++|+.+.+.... -.+-.|.........
T Consensus 5 yPWl~~~~~~~~~~------~----r~~-----ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g 69 (328)
T PRK05707 5 YPWQQSLWQQLAGR------G----RHP-----HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAG 69 (328)
T ss_pred CCCcHHHHHHHHHC------C----Ccc-----eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcC
Confidence 58999777665432 1 111 259999999999999999999999764321 111112111000000
Q ss_pred CccccCCCcccccc----ccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEee
Q 001355 772 NSIFDCQNIDFCDC----KLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVS 843 (1093)
Q Consensus 772 ~si~~~~~l~G~~~----g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~ 843 (1093)
++ +.++-..+ ..++.+.+..+.+.+... ++.|++||++|+ ++...+|.|++.||+-
T Consensus 70 ~H----PD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~-m~~~aaNaLLK~LEEP----------- 133 (328)
T PRK05707 70 SH----PDNFVLEPEEADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEA-MNRNAANALLKSLEEP----------- 133 (328)
T ss_pred CC----CCEEEEeccCCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhh-CCHHHHHHHHHHHhCC-----------
Confidence 00 11111001 112334445555555443 466999999999 9999999999999962
Q ss_pred cCCcEEEEecCC
Q 001355 844 ISGMIFVATSTI 855 (1093)
Q Consensus 844 l~naI~IlTSN~ 855 (1093)
-.+++||++|+.
T Consensus 134 p~~~~fiL~t~~ 145 (328)
T PRK05707 134 SGDTVLLLISHQ 145 (328)
T ss_pred CCCeEEEEEECC
Confidence 146778888874
No 175
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.38 E-value=1.8e-06 Score=103.87 Aligned_cols=146 Identities=15% Similarity=0.129 Sum_probs=85.9
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..++||..++..+.-++. .+-.++|.||+|+|||++++.|+..+...... ..++.+........
T Consensus 191 ~~v~Gq~~~~~al~laa~---------------~G~~llliG~~GsGKTtLak~L~gllpp~~g~-e~le~~~i~s~~g~ 254 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAA---------------GGHNLLLIGPPGTGKTMLASRINGLLPDLSNE-EALESAAILSLVNA 254 (506)
T ss_pred EEEECcHHHHhhhheecc---------------CCcEEEEECCCCCcHHHHHHHHhccCCCCCCc-EEEecchhhhhhcc
Confidence 367899877765432221 11269999999999999999999877433221 22333321100000
Q ss_pred ----CccccCC----CccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecC--CCeE
Q 001355 772 ----NSIFDCQ----NIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDS--YGRD 841 (1093)
Q Consensus 772 ----~si~~~~----~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~--~G~~ 841 (1093)
..+..++ .......+..|.... .-.+.+....++|+||||++. +++.+|..|++.||+|.++.. ++..
T Consensus 255 ~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~-~~pG~l~~A~gGvLfLDEi~e-~~~~~~~~L~~~LE~g~v~I~r~g~~~ 332 (506)
T PRK09862 255 ESVQKQWRQRPFRSPHHSASLTAMVGGGAI-PGPGEISLAHNGVLFLDELPE-FERRTLDALREPIESGQIHLSRTRAKI 332 (506)
T ss_pred ccccCCcCCCCccCCCccchHHHHhCCCce-ehhhHhhhccCCEEecCCchh-CCHHHHHHHHHHHHcCcEEEecCCcce
Confidence 0000000 000000011111110 113456677789999999999 999999999999999998633 2333
Q ss_pred eecCCcEEEEecCC
Q 001355 842 VSISGMIFVATSTI 855 (1093)
Q Consensus 842 V~l~naI~IlTSN~ 855 (1093)
..-.+..+|+|+|.
T Consensus 333 ~~pa~f~lIAa~NP 346 (506)
T PRK09862 333 TYPARFQLVAAMNP 346 (506)
T ss_pred eccCCEEEEEeecC
Confidence 33457789999995
No 176
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.38 E-value=6.2e-06 Score=94.24 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=45.3
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
..++||.+|-++..-.+.-.+.+... +-.+||.||||+|||.+|-+||+.| |..-||+.+..++
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~a--------Gr~iLiaGppGtGKTAlA~~ia~eL-G~~~PF~~isgSE 87 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIA--------GRAILIAGPPGTGKTALAMAIAKEL-GEDVPFVSISGSE 87 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--T--------T-EEEEEE-TTSSHHHHHHHHHHHC-TTTS-EEEEEGGG
T ss_pred ccccChHHHHHHHHHHHHHHhccccc--------CcEEEEeCCCCCCchHHHHHHHHHh-CCCCCeeEcccce
Confidence 36899998877655555544443211 1259999999999999999999998 7888999888765
No 177
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1.4e-06 Score=99.62 Aligned_cols=134 Identities=15% Similarity=0.126 Sum_probs=86.2
Q ss_pred cCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc--eEEeecCCccccCCC
Q 001355 694 VGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK--LIHVDVSSEQRVSQP 771 (1093)
Q Consensus 694 ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--fv~id~s~~~~~~~~ 771 (1093)
.+|+..+...+..++.+.+. ++ .+||+||.|+||+.+|+++|+.+.+.... -.+-.|.........
T Consensus 4 yPW~~~~~~~l~~~~~~~rl-------~H-----A~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g 71 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLG-------HH-----ALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAG 71 (325)
T ss_pred CcchHHHHHHHHHHHHcCCc-------ce-----eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcC
Confidence 58999998888888765543 11 48999999999999999999998774321 111122111100000
Q ss_pred CccccCCCc--cccccc-cccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeec
Q 001355 772 NSIFDCQNI--DFCDCK-LRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSI 844 (1093)
Q Consensus 772 ~si~~~~~l--~G~~~g-~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l 844 (1093)
++ +.+ +....| .++.+.++.+.+.+... ++.|++||++|+ |+...+|+|++.||+- -
T Consensus 72 ~H----PD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~-m~~~AaNaLLKtLEEP-----------p 135 (325)
T PRK06871 72 NH----PDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAER-LTEAAANALLKTLEEP-----------R 135 (325)
T ss_pred CC----CCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhh-hCHHHHHHHHHHhcCC-----------C
Confidence 00 111 111011 23334445555555544 446999999999 9999999999999962 2
Q ss_pred CCcEEEEecCC
Q 001355 845 SGMIFVATSTI 855 (1093)
Q Consensus 845 ~naI~IlTSN~ 855 (1093)
.+++||++|+.
T Consensus 136 ~~~~fiL~t~~ 146 (325)
T PRK06871 136 PNTYFLLQADL 146 (325)
T ss_pred CCeEEEEEECC
Confidence 47788998874
No 178
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=1.6e-06 Score=99.07 Aligned_cols=138 Identities=21% Similarity=0.192 Sum_probs=84.6
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc---cccC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE---QRVS 769 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~---~~~~ 769 (1093)
-.+||..+...+..++.+.+. | -.+||+||.|+||+.+|.++|+.+++.... -.-.|... ....
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl-------~-----HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~-~~~~c~~c~~~~~g~ 71 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRL-------G-----HGLLICGPEGLGKRAVALALAEHVLASGPD-PAAAQRTRQLIAAGT 71 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCc-------c-----eeEeeECCCCCCHHHHHHHHHHHHhCCCCC-CCCcchHHHHHhcCC
Confidence 468999999888887765433 1 249999999999999999999999875421 11112111 0000
Q ss_pred CCCc-ccc-CCCcccccc-ccccchhhhHHHHHHHhCC----ceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 770 QPNS-IFD-CQNIDFCDC-KLRGKVLVDYIYQEFRSKP----YSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 770 ~~~s-i~~-~~~l~G~~~-g~~g~~~~~~l~eal~~~p----~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
..+- +.. .+...|... .-++.+.+..+.+.+...| +.|++||++|+ |+...+|.|++.||+-
T Consensus 72 HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~-m~~~AaNaLLKtLEEP---------- 140 (319)
T PRK08769 72 HPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADA-INRAACNALLKTLEEP---------- 140 (319)
T ss_pred CCCEEEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhh-hCHHHHHHHHHHhhCC----------
Confidence 0000 000 010000000 0012233344555444444 46999999999 9999999999999962
Q ss_pred ecCCcEEEEecCC
Q 001355 843 SISGMIFVATSTI 855 (1093)
Q Consensus 843 ~l~naI~IlTSN~ 855 (1093)
-.+++||++|+.
T Consensus 141 -p~~~~fiL~~~~ 152 (319)
T PRK08769 141 -SPGRYLWLISAQ 152 (319)
T ss_pred -CCCCeEEEEECC
Confidence 247788888874
No 179
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.33 E-value=6.1e-06 Score=94.95 Aligned_cols=51 Identities=22% Similarity=0.129 Sum_probs=43.5
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|+++++..++..+.....|...++ ..++|+||+|+|||++|++|++.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r-------~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERK-------QILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCC-------cEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999988876544221 369999999999999999999987
No 180
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.32 E-value=1.7e-06 Score=99.53 Aligned_cols=134 Identities=13% Similarity=0.050 Sum_probs=86.5
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc---cccC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE---QRVS 769 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~---~~~~ 769 (1093)
-.+|+..+-..+...+...+. + -.+||+||.|+||+.+|.++|+.+++....- ...|+.. ....
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl-------~-----HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~-~~~Cg~C~sC~~~~ 69 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRG-------H-----HALLIQALPGMGDDALIYALSRWLMCQQPQG-HKSCGHCRGCQLMQ 69 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCc-------c-----eEEeeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHH
Confidence 358999988888887765443 1 2589999999999999999999998743210 0123321 1000
Q ss_pred CCCccccCCCc--ccccc--ccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeE
Q 001355 770 QPNSIFDCQNI--DFCDC--KLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRD 841 (1093)
Q Consensus 770 ~~~si~~~~~l--~G~~~--g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~ 841 (1093)
..++ +.+ +..+. ..++.+.++.+.+.+... .+.|++||++|+ |+...+|.|++.||+-
T Consensus 70 ~g~H----PD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~-m~~~AaNaLLKtLEEP--------- 135 (334)
T PRK07993 70 AGTH----PDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAAL-LTDAAANALLKTLEEP--------- 135 (334)
T ss_pred cCCC----CCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHh-hCHHHHHHHHHHhcCC---------
Confidence 0000 111 11111 113334445555555544 455999999999 9999999999999972
Q ss_pred eecCCcEEEEecCC
Q 001355 842 VSISGMIFVATSTI 855 (1093)
Q Consensus 842 V~l~naI~IlTSN~ 855 (1093)
-.+++||++|+.
T Consensus 136 --p~~t~fiL~t~~ 147 (334)
T PRK07993 136 --PENTWFFLACRE 147 (334)
T ss_pred --CCCeEEEEEECC
Confidence 247789998874
No 181
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.31 E-value=4.6e-06 Score=106.80 Aligned_cols=122 Identities=19% Similarity=0.274 Sum_probs=80.0
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC-------CCceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN-------KGKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs-------~~~fv~id~s~ 764 (1093)
..|+|+++.+..+...+.+... -.++|+||+|||||.+|+.||..+... ...++.+|++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~-------------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~ 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK-------------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc-------------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH
Confidence 4589999888888877653211 147999999999999999999987432 24567777653
Q ss_pred ccccCCCCccccCCCccccccccccc--hhhhHHHHHHHhCCceEEEEcccccccC-------HHHHHHHhhhhcCCeEe
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGK--VLVDYIYQEFRSKPYSVVFLEDLDKAAD-------PIVQSSLTKAISTGKFT 835 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~--~~~~~l~eal~~~p~~VI~LDEVDkiad-------~~vq~~Ll~aLe~Gr~~ 835 (1093)
.-. | ..|+|. ..+..+.+.+......|||||||+.|.. ..+.+.|+.++..|.++
T Consensus 246 l~a--------------g--~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~ 309 (821)
T CHL00095 246 LLA--------------G--TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQ 309 (821)
T ss_pred Hhc--------------c--CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcE
Confidence 210 1 123331 1223344444555667999999986332 24678888888877544
Q ss_pred cCCCeEeecCCcEEEEecCC
Q 001355 836 DSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 836 d~~G~~V~l~naI~IlTSN~ 855 (1093)
+|.+|+.
T Consensus 310 -------------~IgaTt~ 316 (821)
T CHL00095 310 -------------CIGATTL 316 (821)
T ss_pred -------------EEEeCCH
Confidence 7777774
No 182
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.31 E-value=6.5e-06 Score=98.64 Aligned_cols=86 Identities=16% Similarity=0.252 Sum_probs=53.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccC--CCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGN--KGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs--~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
+++|+||+|+|||+++++++..+... ...++++++..+.. .+... + .....+.+.+.++. .
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~-----------~~~~~---~-~~~~~~~~~~~~~~--~ 212 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN-----------DFVNA---L-RNNTMEEFKEKYRS--V 212 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-----------HHHHH---H-HcCcHHHHHHHHhc--C
Confidence 69999999999999999999988654 34566776654211 00000 0 00111334444443 4
Q ss_pred eEEEEcccccccC-HHHHHHHhhhhc
Q 001355 806 SVVFLEDLDKAAD-PIVQSSLTKAIS 830 (1093)
Q Consensus 806 ~VI~LDEVDkiad-~~vq~~Ll~aLe 830 (1093)
.+|+||||+.+.. ...|..|+..++
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n 238 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFN 238 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHH
Confidence 5999999998333 345666666664
No 183
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.1e-06 Score=108.02 Aligned_cols=137 Identities=20% Similarity=0.184 Sum_probs=87.4
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQ 770 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~ 770 (1093)
++.|-|.++|..+|-+.+.-.+....+. +..+|.+--+||+||||||||.+|+|+|-.- +-||+.+..+++-+
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~-~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEFvE--- 382 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQ-ELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEFVE--- 382 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHH-HcCCcCcCceEEECCCCCcHHHHHHHHhccc---CCceeeechHHHHH---
Confidence 4678999999999888886554221111 0011222238999999999999999999643 77898888776422
Q ss_pred CCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCH--------------HHHHHHhhhhcCCeEec
Q 001355 771 PNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADP--------------IVQSSLTKAISTGKFTD 836 (1093)
Q Consensus 771 ~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~--------------~vq~~Ll~aLe~Gr~~d 836 (1093)
.+.| .|...+..++...+.+-.+|||+||||.++.. ...|.|+--|| |
T Consensus 383 --------~~~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD-g---- 444 (774)
T KOG0731|consen 383 --------MFVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD-G---- 444 (774)
T ss_pred --------Hhcc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc-C----
Confidence 1111 22233455666667777799999999963322 23444444443 2
Q ss_pred CCCeEeecCCcEEEEecCCC
Q 001355 837 SYGRDVSISGMIFVATSTIL 856 (1093)
Q Consensus 837 ~~G~~V~l~naI~IlTSN~~ 856 (1093)
-... .++||+.+||..
T Consensus 445 ---f~~~-~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 445 ---FETS-KGVIVLAATNRP 460 (774)
T ss_pred ---CcCC-CcEEEEeccCCc
Confidence 1222 578999999963
No 184
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.29 E-value=1.2e-05 Score=96.36 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=43.8
Q ss_pred HHHhhccc--cccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 001355 976 EDFFDQTD--AIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENVV 1049 (1093)
Q Consensus 976 ~efl~rId--~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~vl 1049 (1093)
+.+..|+. -++.++|++.++...++.+.+.. .+..+.++++++++|+...-. -.|.++..+..++
T Consensus 258 ~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~-------~gl~~~l~~evl~~Ia~~~~g--d~R~L~gaL~~l~ 324 (450)
T PRK14087 258 NRLITRFNMGLSIAIQKLDNKTATAIIKKEIKN-------QNIKQEVTEEAINFISNYYSD--DVRKIKGSVSRLN 324 (450)
T ss_pred HHHHHHHhCCceeccCCcCHHHHHHHHHHHHHh-------cCCCCCCCHHHHHHHHHccCC--CHHHHHHHHHHHH
Confidence 34444443 57889999999999999887764 133347999999999987331 2334444454444
No 185
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.28 E-value=2e-05 Score=96.25 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=53.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccC--CCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGN--KGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs--~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
+|+|+|++|+|||+|+++|+..+... ...++++++..+.. .+... +.. ...+.+.+.++. .
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~-----------el~~a---l~~-~~~~~f~~~y~~--~ 378 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN-----------EFINS---IRD-GKGDSFRRRYRE--M 378 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-----------HHHHH---HHh-ccHHHHHHHhhc--C
Confidence 59999999999999999999987532 34556676654211 00000 000 011233333433 3
Q ss_pred eEEEEcccccccC-HHHHHHHhhhhcC
Q 001355 806 SVVFLEDLDKAAD-PIVQSSLTKAIST 831 (1093)
Q Consensus 806 ~VI~LDEVDkiad-~~vq~~Ll~aLe~ 831 (1093)
.||+||||+.+.. ...|..|..+|+.
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~ 405 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNT 405 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHH
Confidence 6999999998444 4456777777763
No 186
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.27 E-value=1.7e-05 Score=86.50 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=85.0
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPN 772 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~ 772 (1093)
.++|-++....|..-..+...|... ..+|++|+.|||||.+++++........-.+|.|+-...
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G~pa---------nnvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L------- 91 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQGLPA---------NNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL------- 91 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcCCCC---------cceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh-------
Confidence 4688888888888888888776532 369999999999999999999887655544554442211
Q ss_pred ccccCCCccccccccccchhhhHHHHHHHhCCce-EEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEE
Q 001355 773 SIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS-VVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVA 851 (1093)
Q Consensus 773 si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~-VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~Il 851 (1093)
..+..+.+.++..|+. |||+|+.--=.+..-.+.|+.+||-|- . -.-.|++|.+
T Consensus 92 ------------------~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgl-e------~~P~NvliyA 146 (249)
T PF05673_consen 92 ------------------GDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGL-E------ARPDNVLIYA 146 (249)
T ss_pred ------------------ccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCcc-c------cCCCcEEEEE
Confidence 1134567777766665 899999753134445577777777442 2 2346899999
Q ss_pred ecCC
Q 001355 852 TSTI 855 (1093)
Q Consensus 852 TSN~ 855 (1093)
|||.
T Consensus 147 TSNR 150 (249)
T PF05673_consen 147 TSNR 150 (249)
T ss_pred ecch
Confidence 9995
No 187
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=4.8e-06 Score=95.91 Aligned_cols=136 Identities=15% Similarity=0.096 Sum_probs=79.7
Q ss_pred cCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc---eEEeecCCc---cc
Q 001355 694 VGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK---LIHVDVSSE---QR 767 (1093)
Q Consensus 694 ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~---fv~id~s~~---~~ 767 (1093)
.+||..+...+... .+ +-+ -.+||+||+|+||+.+|+.+|+.+...... -.+-.|... ..
T Consensus 3 yPW~~~~~~~l~~~-----~~----rl~-----ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~ 68 (342)
T PRK06964 3 YPWQTDDWNRLQAL-----RA----RLP-----HALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQ 68 (342)
T ss_pred CcccHHHHHHHHHh-----cC----Ccc-----eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence 58999888777663 11 111 259999999999999999999988764321 111122111 00
Q ss_pred cCCCCc-cccCCCc------------------ccc----ccccccchhhhHHHHHHHhC----CceEEEEcccccccCHH
Q 001355 768 VSQPNS-IFDCQNI------------------DFC----DCKLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPI 820 (1093)
Q Consensus 768 ~~~~~s-i~~~~~l------------------~G~----~~g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~ 820 (1093)
....+. ...+... -|. ....++.+.++.+.+.+... .+.|++||++|+ |+..
T Consensus 69 ~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~-m~~~ 147 (342)
T PRK06964 69 GNHPDYRIVRPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEA-LNVA 147 (342)
T ss_pred CCCCCEEEEecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhh-cCHH
Confidence 010000 0000000 000 00112223334454544433 456999999999 9999
Q ss_pred HHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 821 VQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 821 vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
..|.|++.||+- -.+++||++|+.
T Consensus 148 AaNaLLKtLEEP-----------p~~t~fiL~t~~ 171 (342)
T PRK06964 148 AANALLKTLEEP-----------PPGTVFLLVSAR 171 (342)
T ss_pred HHHHHHHHhcCC-----------CcCcEEEEEECC
Confidence 999999999952 247788888874
No 188
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.4e-06 Score=95.21 Aligned_cols=130 Identities=18% Similarity=0.196 Sum_probs=88.0
Q ss_pred ccCccHHHHHHHHHHHHHH--------HhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 693 KVGWQDEAICTISQAVSRW--------RIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~--------rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.|.|-+..|.+|.+++.-. ..|+..|+ -+++||+||+|||.+|+++|..- ..-|+++-.+.
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPK--------GVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGse 254 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPK--------GVILYGEPGTGKTLLAKAVANQT---SATFLRVVGSE 254 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCC--------eeEEeCCCCCchhHHHHHHhccc---chhhhhhhhHH
Confidence 4567777777777777532 13444432 38999999999999999999755 44566554443
Q ss_pred ccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc----------CHHHHHHHhhhhcCCeE
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA----------DPIVQSSLTKAISTGKF 834 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia----------d~~vq~~Ll~aLe~Gr~ 834 (1093)
.- +.|.|.-+ ..+..++....++..+|+||||||.|. ..++|..+++++..=.-
T Consensus 255 Li-----------QkylGdGp-----klvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldG 318 (440)
T KOG0726|consen 255 LI-----------QKYLGDGP-----KLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 318 (440)
T ss_pred HH-----------HHHhccch-----HHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccC
Confidence 11 34555433 345667777777777999999999632 36899999999975333
Q ss_pred ecCCCeEeecCCcEEEEecCC
Q 001355 835 TDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 835 ~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.|+.| ++-+|++||.
T Consensus 319 Fdsrg------DvKvimATnr 333 (440)
T KOG0726|consen 319 FDSRG------DVKVIMATNR 333 (440)
T ss_pred ccccC------CeEEEEeccc
Confidence 34443 5568999995
No 189
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3.2e-06 Score=93.59 Aligned_cols=137 Identities=19% Similarity=0.170 Sum_probs=87.1
Q ss_pred cccCccHHHHHHHHHHHHHHHhc--CCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIG--NGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVS 769 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg--~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~ 769 (1093)
+.|.|--++++++.+.|.-.... +..|-+ =|.+.-++++||+|+|||.+|+++|..+ ..+|+.+-.+...
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvg--Ik~Pkg~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~lv--- 203 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVG--IKPPKGLLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSALV--- 203 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccC--CCCCceeEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhhhh---
Confidence 34667777777777776544321 111101 1344569999999999999999999998 6677776655422
Q ss_pred CCCccccCCCccccccccccchhh-hHHHHHHHhCCceEEEEccccccc----------CHHHHHHHhhhhcCCeEecCC
Q 001355 770 QPNSIFDCQNIDFCDCKLRGKVLV-DYIYQEFRSKPYSVVFLEDLDKAA----------DPIVQSSLTKAISTGKFTDSY 838 (1093)
Q Consensus 770 ~~~si~~~~~l~G~~~g~~g~~~~-~~l~eal~~~p~~VI~LDEVDkia----------d~~vq~~Ll~aLe~Gr~~d~~ 838 (1093)
.+|.|.+.. .+ +++..| ++.-.+|||+||||.|+ |..+|..|+.+++.-.-.|.
T Consensus 204 --------~kyiGEsaR-----lIRemf~yA-~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~- 268 (388)
T KOG0651|consen 204 --------DKYIGESAR-----LIRDMFRYA-REVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT- 268 (388)
T ss_pred --------hhhcccHHH-----HHHHHHHHH-hhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh-
Confidence 123332221 22 333333 34444999999999633 67899999999985433332
Q ss_pred CeEeecCCcEEEEecCCC
Q 001355 839 GRDVSISGMIFVATSTIL 856 (1093)
Q Consensus 839 G~~V~l~naI~IlTSN~~ 856 (1093)
+.++-+|+|+|..
T Consensus 269 -----l~rVk~ImatNrp 281 (388)
T KOG0651|consen 269 -----LHRVKTIMATNRP 281 (388)
T ss_pred -----cccccEEEecCCc
Confidence 2456689999963
No 190
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.24 E-value=1.1e-05 Score=96.39 Aligned_cols=87 Identities=14% Similarity=0.209 Sum_probs=51.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccC--CCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGN--KGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs--~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
+++|+||+|+|||+|+++++..+... ...++++++..+.. .+.. .+.. ...+.+.+..+. ..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~-----------~~~~---~~~~-~~~~~f~~~~~~-~~ 195 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-----------DLVD---SMKE-GKLNEFREKYRK-KV 195 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-----------HHHH---HHhc-ccHHHHHHHHHh-cC
Confidence 59999999999999999999877543 23566666554211 0000 0000 011233333332 24
Q ss_pred eEEEEcccccccC-HHHHHHHhhhhc
Q 001355 806 SVVFLEDLDKAAD-PIVQSSLTKAIS 830 (1093)
Q Consensus 806 ~VI~LDEVDkiad-~~vq~~Ll~aLe 830 (1093)
.||+|||++.+++ ...|..|...+.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n 221 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFN 221 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHH
Confidence 6999999997333 345666666664
No 191
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.24 E-value=1.5e-05 Score=95.30 Aligned_cols=86 Identities=17% Similarity=0.257 Sum_probs=52.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
+++|+||+|+|||+|+++++..+......+++++....... +.. .+.. .....+....+ ...|
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~-----------~~~---~l~~-~~~~~f~~~~~--~~dv 205 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH-----------LVS---AIRS-GEMQRFRQFYR--NVDA 205 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH-----------HHH---HHhc-chHHHHHHHcc--cCCE
Confidence 69999999999999999999988655556666665432110 000 0000 01122333332 2359
Q ss_pred EEEccccccc-CHHHHHHHhhhhc
Q 001355 808 VFLEDLDKAA-DPIVQSSLTKAIS 830 (1093)
Q Consensus 808 I~LDEVDkia-d~~vq~~Ll~aLe 830 (1093)
|+||||+.+. ....|..|...+.
T Consensus 206 LiIDDiq~l~~k~~~qeelf~l~N 229 (445)
T PRK12422 206 LFIEDIEVFSGKGATQEEFFHTFN 229 (445)
T ss_pred EEEcchhhhcCChhhHHHHHHHHH
Confidence 9999999832 2456777777665
No 192
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.24 E-value=7.7e-06 Score=105.12 Aligned_cols=122 Identities=21% Similarity=0.315 Sum_probs=75.2
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC-------CCceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN-------KGKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs-------~~~fv~id~s~ 764 (1093)
..|+||++.+..+...+.+.. + ..++|+||+|||||.+|+.||..+... ...++.+|++.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~----~---------~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT----K---------NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC----C---------CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH
Confidence 358999987777666653321 1 147899999999999999999987432 34456666553
Q ss_pred ccccCCCCccccCCCccccccccccc--hhhhHHHHHHHh-CCceEEEEcccccccC-------HHHHHHHhhhhcCCeE
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGK--VLVDYIYQEFRS-KPYSVVFLEDLDKAAD-------PIVQSSLTKAISTGKF 834 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~--~~~~~l~eal~~-~p~~VI~LDEVDkiad-------~~vq~~Ll~aLe~Gr~ 834 (1093)
... | ..|+|. ..+..+...+.+ ....|||||||+.|.. .+.++.|+.++..|.+
T Consensus 240 l~a--------------~--~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i 303 (852)
T TIGR03346 240 LIA--------------G--AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGEL 303 (852)
T ss_pred Hhh--------------c--chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCce
Confidence 110 0 112221 112223333332 3467999999998331 3567888888876654
Q ss_pred ecCCCeEeecCCcEEEEecCC
Q 001355 835 TDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 835 ~d~~G~~V~l~naI~IlTSN~ 855 (1093)
. +|.+|+.
T Consensus 304 ~-------------~IgaTt~ 311 (852)
T TIGR03346 304 H-------------CIGATTL 311 (852)
T ss_pred E-------------EEEeCcH
Confidence 3 7887774
No 193
>PRK04132 replication factor C small subunit; Provisional
Probab=98.22 E-value=1.4e-05 Score=100.90 Aligned_cols=95 Identities=20% Similarity=0.324 Sum_probs=69.1
Q ss_pred eEEEeeC--CCCChHHHHHHHHHHHhccC--CCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHH-HHHH
Q 001355 727 IWLAFLG--PDKVGKKKIASALAEIVFGN--KGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIY-QEFR 801 (1093)
Q Consensus 727 ~~LLf~G--p~GvGKT~lAraLA~~lfgs--~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~-eal~ 801 (1093)
..-++.| |.+.|||++|++||+.+||. ..+++.+|.+... |.+.++.+. +...
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r----------------------gid~IR~iIk~~a~ 622 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER----------------------GINVIREKVKEFAR 622 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc----------------------cHHHHHHHHHHHHh
Confidence 3456678 99999999999999999985 4568888877521 112222222 2222
Q ss_pred h-----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 802 S-----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 802 ~-----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
. .++.||||||+|+ ++...|+.|++.||+- -.+++||++||.
T Consensus 623 ~~~~~~~~~KVvIIDEaD~-Lt~~AQnALLk~lEep-----------~~~~~FILi~N~ 669 (846)
T PRK04132 623 TKPIGGASFKIIFLDEADA-LTQDAQQALRRTMEMF-----------SSNVRFILSCNY 669 (846)
T ss_pred cCCcCCCCCEEEEEECccc-CCHHHHHHHHHHhhCC-----------CCCeEEEEEeCC
Confidence 1 2357999999999 9999999999999952 136779999984
No 194
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=3.7e-06 Score=95.97 Aligned_cols=133 Identities=10% Similarity=0.078 Sum_probs=86.3
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcc---ccC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQ---RVS 769 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~---~~~ 769 (1093)
-.+|+.+....+..++.+.+. + -.+||.||.|+||+.+|+.+|+.+......- ..|+... ...
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl-------~-----hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C~sC~~~~ 69 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRI-------P-----GALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHSCELMQ 69 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCc-------c-----eeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCHHHHHHH
Confidence 468999999888877765433 1 2599999999999999999999987754321 1233211 000
Q ss_pred CCCccccCCCc--cccc--cccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeE
Q 001355 770 QPNSIFDCQNI--DFCD--CKLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRD 841 (1093)
Q Consensus 770 ~~~si~~~~~l--~G~~--~g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~ 841 (1093)
..++ +.+ +... ...++.+.++.+.+.+... .+.|++||++|+ ++...+|+|++.||+-
T Consensus 70 ~g~H----PD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~-m~~~AaNaLLKtLEEP--------- 135 (319)
T PRK06090 70 SGNH----PDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADA-MNESASNALLKTLEEP--------- 135 (319)
T ss_pred cCCC----CCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhh-hCHHHHHHHHHHhcCC---------
Confidence 0000 111 1111 0122333444555555444 467999999999 9999999999999962
Q ss_pred eecCCcEEEEecCC
Q 001355 842 VSISGMIFVATSTI 855 (1093)
Q Consensus 842 V~l~naI~IlTSN~ 855 (1093)
-.+++||++|+.
T Consensus 136 --p~~t~fiL~t~~ 147 (319)
T PRK06090 136 --APNCLFLLVTHN 147 (319)
T ss_pred --CCCeEEEEEECC
Confidence 247888988874
No 195
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.19 E-value=2e-05 Score=98.26 Aligned_cols=132 Identities=18% Similarity=0.216 Sum_probs=76.2
Q ss_pred ccCccHHHHHHHHHHHHHHHhc--CCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIG--NGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQ 770 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg--~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~ 770 (1093)
.+.|.+.+...+...+...... ....... .+..++|+||+|+|||++|++++..+ ..+|+.++++.+..
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~---~~~gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~--- 223 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGK---IPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVE--- 223 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCC---CCCcEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHH---
Confidence 4567676666666555432210 0000011 11239999999999999999999877 56888888775321
Q ss_pred CCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccC-------------HHHHHHHhhhhcCCeEecC
Q 001355 771 PNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAAD-------------PIVQSSLTKAISTGKFTDS 837 (1093)
Q Consensus 771 ~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad-------------~~vq~~Ll~aLe~Gr~~d~ 837 (1093)
.+.|. +......+....+....+||||||||.+.. ..+.+.|+..|+. +.
T Consensus 224 --------~~~g~-----~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg--~~-- 286 (644)
T PRK10733 224 --------MFVGV-----GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG--FE-- 286 (644)
T ss_pred --------hhhcc-----cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc--cc--
Confidence 11111 112223344444555568999999998321 1244555555541 11
Q ss_pred CCeEeecCCcEEEEecCC
Q 001355 838 YGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 838 ~G~~V~l~naI~IlTSN~ 855 (1093)
.-.+.+||+|||.
T Consensus 287 -----~~~~vivIaaTN~ 299 (644)
T PRK10733 287 -----GNEGIIVIAATNR 299 (644)
T ss_pred -----CCCCeeEEEecCC
Confidence 1235788999985
No 196
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.18 E-value=3.2e-06 Score=90.18 Aligned_cols=117 Identities=20% Similarity=0.298 Sum_probs=80.1
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC--CCceEEeecCCccccC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN--KGKLIHVDVSSEQRVS 769 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs--~~~fv~id~s~~~~~~ 769 (1093)
..|+|-++.++.+.-... .|.. | .++|.||||+|||+.+..||+.+.|. .+.++.+|.+..
T Consensus 27 ~dIVGNe~tv~rl~via~---~gnm----P------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde---- 89 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK---EGNM----P------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE---- 89 (333)
T ss_pred HHhhCCHHHHHHHHHHHH---cCCC----C------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc----
Confidence 468999988876654332 2221 2 49999999999999999999999884 333444444421
Q ss_pred CCCccccCCCccccccccccchhh----hHHHH-HHH--hCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 770 QPNSIFDCQNIDFCDCKLRGKVLV----DYIYQ-EFR--SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 770 ~~~si~~~~~l~G~~~g~~g~~~~----~~l~e-al~--~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
+|-+.+ ..|+. .+. ...|.||+|||.|. |....|++|.+.|| +
T Consensus 90 ------------------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADS-MT~gAQQAlRRtME-----------i 139 (333)
T KOG0991|consen 90 ------------------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADS-MTAGAQQALRRTME-----------I 139 (333)
T ss_pred ------------------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccch-hhhHHHHHHHHHHH-----------H
Confidence 222222 11211 111 23566999999999 99999999999998 3
Q ss_pred ecCCcEEEEecCC
Q 001355 843 SISGMIFVATSTI 855 (1093)
Q Consensus 843 ~l~naI~IlTSN~ 855 (1093)
.-+-++|+++||.
T Consensus 140 yS~ttRFalaCN~ 152 (333)
T KOG0991|consen 140 YSNTTRFALACNQ 152 (333)
T ss_pred Hcccchhhhhhcc
Confidence 3345779999996
No 197
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=5.5e-06 Score=92.13 Aligned_cols=107 Identities=21% Similarity=0.318 Sum_probs=63.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhc-cCC-----CceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVF-GNK-----GKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR 801 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lf-gs~-----~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~ 801 (1093)
.+|++||||||||.++++||+.+- +.. ..++.|++ |+++ .++|+.....+. ..-+.+.+.+.
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins---------hsLF--SKWFsESgKlV~-kmF~kI~ELv~ 246 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS---------HSLF--SKWFSESGKLVA-KMFQKIQELVE 246 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh---------hHHH--HHHHhhhhhHHH-HHHHHHHHHHh
Confidence 589999999999999999999772 111 11233332 3333 344443222111 12245555555
Q ss_pred hCCce-EEEEcccccccC--------------HHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 802 SKPYS-VVFLEDLDKAAD--------------PIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 802 ~~p~~-VI~LDEVDkiad--------------~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
....- .|+|||||.|+- ..+.|.|+.-|+.=+ ...|+++.+|||+
T Consensus 247 d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK---------~~~NvliL~TSNl 306 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK---------RYPNVLILATSNL 306 (423)
T ss_pred CCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc---------cCCCEEEEeccch
Confidence 43222 578999997331 247788888777422 2358888888886
No 198
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=8.2e-06 Score=98.18 Aligned_cols=118 Identities=17% Similarity=0.128 Sum_probs=72.8
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNG-RDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~-~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
.|.|-.++...+.+.|........ ..+-|. +-..-+||+||||||||++|.++|... +-+||.+-..+.-
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~pl-r~~~giLLyGppGcGKT~la~a~a~~~---~~~fisvKGPElL----- 738 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPL-RLRTGILLYGPPGCGKTLLASAIASNS---NLRFISVKGPELL----- 738 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCc-ccccceEEECCCCCcHHHHHHHHHhhC---CeeEEEecCHHHH-----
Confidence 466666677766666654321000 000011 111349999999999999999999865 5566665533211
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccC----------HHHHHHHhhhhc
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAAD----------PIVQSSLTKAIS 830 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad----------~~vq~~Ll~aLe 830 (1093)
.+|+|..+. .++.+++..+....+|+||||+|.||+ ..+.|.|+.-|+
T Consensus 739 ------~KyIGaSEq-----~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelD 796 (952)
T KOG0735|consen 739 ------SKYIGASEQ-----NVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELD 796 (952)
T ss_pred ------HHHhcccHH-----HHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhc
Confidence 356665442 234555555555669999999998664 357888887776
No 199
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.11 E-value=1.7e-05 Score=93.67 Aligned_cols=139 Identities=16% Similarity=0.164 Sum_probs=81.7
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPN 772 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~ 772 (1093)
.+++-++.++.+..++... -.++|+||+|||||++|+.||..+.+.. .+..+++-.+......
T Consensus 176 d~~i~e~~le~l~~~L~~~---------------~~iil~GppGtGKT~lA~~la~~l~~~~-~~~~v~~VtFHpsySY- 238 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK---------------KNIILQGPPGVGKTFVARRLAYLLTGEK-APQRVNMVQFHQSYSY- 238 (459)
T ss_pred cccCCHHHHHHHHHHHhcC---------------CCEEEECCCCCCHHHHHHHHHHHhcCCc-ccceeeEEeecccccH-
Confidence 4677777777776665421 1489999999999999999999986642 3334444332211100
Q ss_pred ccccCCCcc-ccccccccch-----hhhHHHHHHHhCC--ceEEEEcccccccCHH-HHHHHhhhhcCCe------Ee--
Q 001355 773 SIFDCQNID-FCDCKLRGKV-----LVDYIYQEFRSKP--YSVVFLEDLDKAADPI-VQSSLTKAISTGK------FT-- 835 (1093)
Q Consensus 773 si~~~~~l~-G~~~g~~g~~-----~~~~l~eal~~~p--~~VI~LDEVDkiad~~-vq~~Ll~aLe~Gr------~~-- 835 (1093)
..++ |..++..|.. +.+.+..+ ..+| ..|||||||++ ++.. +...|+.+||.+. +.
T Consensus 239 -----eDFI~G~rP~~vgy~~~~G~f~~~~~~A-~~~p~~~~vliIDEINR-ani~kiFGel~~lLE~~~rg~~~~v~l~ 311 (459)
T PRK11331 239 -----EDFIQGYRPNGVGFRRKDGIFYNFCQQA-KEQPEKKYVFIIDEINR-ANLSKVFGEVMMLMEHDKRGENWSVPLT 311 (459)
T ss_pred -----HHHhcccCCCCCCeEecCchHHHHHHHH-HhcccCCcEEEEehhhc-cCHHHhhhhhhhhccccccccccceeee
Confidence 0111 2222222221 22222333 3333 46999999999 9954 6889999998642 11
Q ss_pred --cCCC-eEeecCCcEEEEecCC
Q 001355 836 --DSYG-RDVSISGMIFVATSTI 855 (1093)
Q Consensus 836 --d~~G-~~V~l~naI~IlTSN~ 855 (1093)
...+ .-.--.|.+||.|.|.
T Consensus 312 y~e~d~e~f~iP~Nl~IIgTMNt 334 (459)
T PRK11331 312 YSENDEERFYVPENVYIIGLMNT 334 (459)
T ss_pred ccccccccccCCCCeEEEEecCc
Confidence 0111 1223368899999996
No 200
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=7.9e-06 Score=89.85 Aligned_cols=109 Identities=23% Similarity=0.241 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhc------------ccCccHHHHHHHHHHHHHH------HhcCCCCCCCCCCCCeEEEeeCCCCChHHHH
Q 001355 681 RDYKTLRIALAE------------KVGWQDEAICTISQAVSRW------RIGNGRDVGSNSKRGIWLAFLGPDKVGKKKI 742 (1093)
Q Consensus 681 e~lk~L~~~L~e------------~ViGQdeai~~Ia~aI~~~------rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~l 742 (1093)
.+-+.|...|.. .|-|-+-|.+++-+++.-. ..|.++| . --+||+||||+||++|
T Consensus 110 pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~P--w-----rgiLLyGPPGTGKSYL 182 (439)
T KOG0739|consen 110 PEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKP--W-----RGILLYGPPGTGKSYL 182 (439)
T ss_pred hhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCc--c-----eeEEEeCCCCCcHHHH
Confidence 355777777753 3556667788888876432 2333322 1 2499999999999999
Q ss_pred HHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccc
Q 001355 743 ASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDK 815 (1093)
Q Consensus 743 AraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDk 815 (1093)
|+++|-.- +.-|++|.-+..- ..+.|..+ ..+..|++..+++..+||||||||.
T Consensus 183 AKAVATEA---nSTFFSvSSSDLv-----------SKWmGESE-----kLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 183 AKAVATEA---NSTFFSVSSSDLV-----------SKWMGESE-----KLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HHHHHhhc---CCceEEeehHHHH-----------HHHhccHH-----HHHHHHHHHHHhcCCcEEEeehhhh
Confidence 99999654 4556666544311 23333322 2456788888888889999999997
No 201
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.09 E-value=3.1e-05 Score=85.01 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=47.1
Q ss_pred cChHHHhhccccccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHHHHHH
Q 001355 973 AWLEDFFDQTDAIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENVVLRS 1052 (1093)
Q Consensus 973 ~~~~efl~rId~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~vl~~~ 1052 (1093)
...+||++|+ .+|.-.|++.+++++|+...... + .|.+++++++.|..-+-.+.+ ++.-+.|.|.
T Consensus 350 Gip~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~~--E-------~l~~~e~a~~~l~~~gt~tsL-----Ry~vqLl~p~ 414 (456)
T KOG1942|consen 350 GIPPDLLDRL-LIIRTLPYDEEEIRQIIKIRAQV--E-------GLQVEEEALDLLAEIGTSTSL-----RYAVQLLTPA 414 (456)
T ss_pred CCCHHHhhhe-eEEeeccCCHHHHHHHHHHHHhh--h-------cceecHHHHHHHHhhccchhH-----HHHHHhcCHH
Confidence 5678999999 48899999999999998653321 1 278999999999876554333 3444566555
No 202
>PRK09087 hypothetical protein; Validated
Probab=98.08 E-value=2.9e-05 Score=84.77 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=45.0
Q ss_pred HHHhhccc--cccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 001355 976 EDFFDQTD--AIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENVV 1049 (1093)
Q Consensus 976 ~efl~rId--~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~vl 1049 (1093)
+++..|+. .++.++|++.+++.+++.+.+.. . .+.++++++++|+...- ++ -+.++..+..+.
T Consensus 136 ~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~-------~--~~~l~~ev~~~La~~~~-r~-~~~l~~~l~~L~ 200 (226)
T PRK09087 136 PDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD-------R--QLYVDPHVVYYLVSRME-RS-LFAAQTIVDRLD 200 (226)
T ss_pred ccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHHhh-hh-HHHHHHHHHHHH
Confidence 45666665 68999999999999999887755 1 37899999999998733 22 234555554443
No 203
>PRK06620 hypothetical protein; Validated
Probab=98.08 E-value=4.6e-05 Score=82.52 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=44.5
Q ss_pred HHHhhccc--cccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 001355 976 EDFFDQTD--AIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENV 1048 (1093)
Q Consensus 976 ~efl~rId--~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~v 1048 (1093)
++|..|+. .++.++|++.+++..++.+.... ..+.++++|+++|+...- + -.|.++..++.+
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~---------~~l~l~~ev~~~L~~~~~-~-d~r~l~~~l~~l 193 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFSI---------SSVTISRQIIDFLLVNLP-R-EYSKIIEILENI 193 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHHcc-C-CHHHHHHHHHHH
Confidence 55666665 36899999999988777765543 137899999999998742 2 345677777764
No 204
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=5.9e-05 Score=87.90 Aligned_cols=59 Identities=19% Similarity=0.359 Sum_probs=39.7
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHh-CCceE
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS-KPYSV 807 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~-~p~~V 807 (1093)
.||+||||||||.+.-|||..| +-...-++++.... + +.|...+.. .+.+|
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~----------------n---------~dLr~LL~~t~~kSI 289 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKL----------------D---------SDLRHLLLATPNKSI 289 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhc---CCceEEeeeccccC----------------c---------HHHHHHHHhCCCCcE
Confidence 8999999999999999999988 33333344433110 0 123333333 45679
Q ss_pred EEEccccc
Q 001355 808 VFLEDLDK 815 (1093)
Q Consensus 808 I~LDEVDk 815 (1093)
|+||+||.
T Consensus 290 ivIEDIDc 297 (457)
T KOG0743|consen 290 LLIEDIDC 297 (457)
T ss_pred EEEeeccc
Confidence 99999997
No 205
>PRK12377 putative replication protein; Provisional
Probab=98.04 E-value=1.1e-05 Score=89.10 Aligned_cols=102 Identities=16% Similarity=0.179 Sum_probs=64.2
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
+++|+||+|+|||++|.+|+..+......++.+.+...-.. +. ..|........+...+.. ..|
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~-----------l~---~~~~~~~~~~~~l~~l~~--~dL 166 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR-----------LH---ESYDNGQSGEKFLQELCK--VDL 166 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH-----------HH---HHHhccchHHHHHHHhcC--CCE
Confidence 79999999999999999999988766566666665432110 00 000000011233344433 349
Q ss_pred EEEccc--ccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCC
Q 001355 808 VFLEDL--DKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTIL 856 (1093)
Q Consensus 808 I~LDEV--Dkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~ 856 (1093)
|+|||+ +. .+...+..|.++|+... . .+.-.|+|||..
T Consensus 167 LiIDDlg~~~-~s~~~~~~l~~ii~~R~-~---------~~~ptiitSNl~ 206 (248)
T PRK12377 167 LVLDEIGIQR-ETKNEQVVLNQIIDRRT-A---------SMRSVGMLTNLN 206 (248)
T ss_pred EEEcCCCCCC-CCHHHHHHHHHHHHHHH-h---------cCCCEEEEcCCC
Confidence 999999 56 67778889999998421 1 112258889973
No 206
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.03 E-value=1.1e-05 Score=77.87 Aligned_cols=121 Identities=17% Similarity=0.067 Sum_probs=64.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccc-cccccchhhhHHHHHHHhCCce
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCD-CKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~-~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
.++|+||+|+|||.+++.|+..+......++.+++........... ........ ....+......+....+..+..
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQL---LLIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHH---HhhhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 6999999999999999999998865544577777765321100000 00000000 0111112223444555555568
Q ss_pred EEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 807 VVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 807 VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
||+|||++. +....+..+...... ...........+..+|+++|.
T Consensus 81 viiiDei~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 81 VLILDEITS-LLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EEEEECCcc-cCCHHHHHHHHhhhh---hHHHHHHHhcCCCEEEEEeCC
Confidence 999999999 554444433322100 000000112245668888883
No 207
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=1.5e-05 Score=91.46 Aligned_cols=132 Identities=14% Similarity=0.112 Sum_probs=78.4
Q ss_pred cCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc---eEEeecCCccccCC
Q 001355 694 VGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK---LIHVDVSSEQRVSQ 770 (1093)
Q Consensus 694 ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~---fv~id~s~~~~~~~ 770 (1093)
.+|+..+...+... .+ +-+ -.+||+||+|+||+.+|+.+|+.+...... --+-.|........
T Consensus 3 yPW~~~~w~~l~~~-----~~----r~~-----hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~ 68 (325)
T PRK08699 3 YPWHQEQWRQIAEH-----WE----RRP-----NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQ 68 (325)
T ss_pred CCccHHHHHHHHHh-----cC----Ccc-----eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhc
Confidence 58999888777654 11 111 259999999999999999999998753221 11112211100000
Q ss_pred CCccccCCCcc--cc-----ccc----cccchhhhHHHHHHHhCC----ceEEEEcccccccCHHHHHHHhhhhcCCeEe
Q 001355 771 PNSIFDCQNID--FC-----DCK----LRGKVLVDYIYQEFRSKP----YSVVFLEDLDKAADPIVQSSLTKAISTGKFT 835 (1093)
Q Consensus 771 ~~si~~~~~l~--G~-----~~g----~~g~~~~~~l~eal~~~p----~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~ 835 (1093)
.++ +.++ .. ..| .++.+.+..+.+.+...| +.|+++|+++. +++..++.|++.||+..
T Consensus 69 ~~H----pD~~~~~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~-Ld~~a~naLLk~LEep~-- 141 (325)
T PRK08699 69 GSH----PDFYEITPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAES-MNLQAANSLLKVLEEPP-- 141 (325)
T ss_pred CCC----CCEEEEecccccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhh-CCHHHHHHHHHHHHhCc--
Confidence 000 1111 00 011 122334455555555444 55999999999 99999999999999742
Q ss_pred cCCCeEeecCCcEEEEecCC
Q 001355 836 DSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 836 d~~G~~V~l~naI~IlTSN~ 855 (1093)
.+++||++|+.
T Consensus 142 ---------~~~~~Ilvth~ 152 (325)
T PRK08699 142 ---------PQVVFLLVSHA 152 (325)
T ss_pred ---------CCCEEEEEeCC
Confidence 23556676663
No 208
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.02 E-value=4.9e-05 Score=88.11 Aligned_cols=150 Identities=11% Similarity=0.079 Sum_probs=85.0
Q ss_pred HHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcccc
Q 001355 689 ALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRV 768 (1093)
Q Consensus 689 ~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~ 768 (1093)
.++.-++||+....++.-... .+ .-.-+|+.|+.|+|||+++|+||.+|- ..-+.++|....+.
T Consensus 14 ~pf~aivGqd~lk~aL~l~av-------~P------~iggvLI~G~kGtaKSt~~Rala~LLp---~~~~V~gc~f~cdP 77 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV-------DP------QIGGALIAGEKGTAKSTLARALADLLP---EIEVVIGCPFNCDP 77 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc-------cc------ccceeEEecCCCccHHHHHHHHHHhCC---ccceecCCCCCCCC
Confidence 456779999977655442211 11 113488899999999999999999983 22233355321111
Q ss_pred CCC--------------CccccC---CCccccccc-----cccchhhhH-H--------HHHHHhCCceEEEEccccccc
Q 001355 769 SQP--------------NSIFDC---QNIDFCDCK-----LRGKVLVDY-I--------YQEFRSKPYSVVFLEDLDKAA 817 (1093)
Q Consensus 769 ~~~--------------~si~~~---~~l~G~~~g-----~~g~~~~~~-l--------~eal~~~p~~VI~LDEVDkia 817 (1093)
... ..+... ..+++.+.+ .+|.--..+ + .+.+-+...+|+++|||.. +
T Consensus 78 ~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnl-L 156 (423)
T COG1239 78 DDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNL-L 156 (423)
T ss_pred CChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccc-c
Confidence 100 000000 011111111 111100000 0 0122344567999999999 9
Q ss_pred CHHHHHHHhhhhcCC-eEecCCCeEeec-CCcEEEEecCC
Q 001355 818 DPIVQSSLTKAISTG-KFTDSYGRDVSI-SGMIFVATSTI 855 (1093)
Q Consensus 818 d~~vq~~Ll~aLe~G-r~~d~~G~~V~l-~naI~IlTSN~ 855 (1093)
+..+|+.|++++++| ....-.|..+.. .+.++|.|.|.
T Consensus 157 ~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNP 196 (423)
T COG1239 157 DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNP 196 (423)
T ss_pred cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCc
Confidence 999999999999999 333334544433 36788999986
No 209
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.8e-05 Score=95.98 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=85.4
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQ 770 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~ 770 (1093)
+..|-|.++++.++.+.|.-.+....+. .-.++.+--+++.||||+|||.+|+++|-.- +-||+++..+.+-+
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~-~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FVe--- 221 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQ-ALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVE--- 221 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhH-hcccccccceeEecCCCCCcHHHHHHHhccc---CCCceeccchhhhh---
Confidence 4678999999999999887665321110 0011233348999999999999999999654 77888777665321
Q ss_pred CCccccCCCccccccccccchhh-hHHHHHHHhCCceEEEEcccccccC-------------HHHHHHHhhhhcCCeEec
Q 001355 771 PNSIFDCQNIDFCDCKLRGKVLV-DYIYQEFRSKPYSVVFLEDLDKAAD-------------PIVQSSLTKAISTGKFTD 836 (1093)
Q Consensus 771 ~~si~~~~~l~G~~~g~~g~~~~-~~l~eal~~~p~~VI~LDEVDkiad-------------~~vq~~Ll~aLe~Gr~~d 836 (1093)
.++| +|...+ +.+.++.+..| +||||||||.+.. .+..|.|+--||- - .
T Consensus 222 --------mfVG-----vGAsRVRdLF~qAkk~aP-~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG-F-~- 284 (596)
T COG0465 222 --------MFVG-----VGASRVRDLFEQAKKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG-F-G- 284 (596)
T ss_pred --------hhcC-----CCcHHHHHHHHHhhccCC-CeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc-C-C-
Confidence 2222 344555 44455554555 9999999996221 1356666655551 1 1
Q ss_pred CCCeEeecCCcEEEEecCC
Q 001355 837 SYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 837 ~~G~~V~l~naI~IlTSN~ 855 (1093)
.-...|+|..||.
T Consensus 285 ------~~~gviviaaTNR 297 (596)
T COG0465 285 ------GNEGVIVIAATNR 297 (596)
T ss_pred ------CCCceEEEecCCC
Confidence 1134678888886
No 210
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.00 E-value=0.00012 Score=90.59 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=39.5
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+.++||++.+..+...+.....+... .-.++|+||+|+|||.+++.||+.+
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~--------~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAP--------KRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCC--------CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999888887655332211 1258999999999999999999876
No 211
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.96 E-value=6.5e-05 Score=92.66 Aligned_cols=139 Identities=12% Similarity=0.065 Sum_probs=85.4
Q ss_pred HHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 684 KTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 684 k~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..|.+.+.-.|.|.+++..+|+-.+.-+-.... +.+..-++|+.+||.|.||+||+.+-+.+++..-+. ++....
T Consensus 278 ~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~-~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~----vytsgk 352 (682)
T COG1241 278 DILIKSIAPSIYGHEDVKKAILLQLFGGVKKNL-PDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRG----VYTSGK 352 (682)
T ss_pred HHHHHHhcccccCcHHHHHHHHHHhcCCCcccC-CCCcccccceeEEEcCCCchhHHHHHHHHHhhCCce----EEEccc
Confidence 345555677899999988888766654322111 222223578999999999999999999999876321 333322
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCC
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY 838 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~ 838 (1093)
..+.. |-+...-.++. .| .+. .=.+|+--...+|..|||+|| |+...+..|.++||.+.++-.+
T Consensus 353 gss~~-------GLTAav~rd~~-tg-e~~-LeaGALVlAD~Gv~cIDEfdK-m~~~dr~aihEaMEQQtIsIaK 416 (682)
T COG1241 353 GSSAA-------GLTAAVVRDKV-TG-EWV-LEAGALVLADGGVCCIDEFDK-MNEEDRVAIHEAMEQQTISIAK 416 (682)
T ss_pred ccccc-------CceeEEEEccC-CC-eEE-EeCCEEEEecCCEEEEEeccC-CChHHHHHHHHHHHhcEeeecc
Confidence 21100 00000000111 11 000 011334445568999999999 9999999999999998877544
No 212
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=6.8e-05 Score=84.43 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=69.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccc-cccc---cccchhhhHHHHHHHhC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDF-CDCK---LRGKVLVDYIYQEFRSK 803 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G-~~~g---~~g~~~~~~l~eal~~~ 803 (1093)
.+||+||+|+||+.+|.++|+.+++...+- +|........ +.+.- .+++ ..+.+..+.+.+.+...
T Consensus 21 AyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~c~~~~~~~H-------PD~~~i~p~~~~~~I~idqiR~l~~~~~~~ 90 (290)
T PRK05917 21 AIILHGQDLSNLSARAYELASLILKETSPE---AAYKISQKIH-------PDIHEFSPQGKGRLHSIETPRAIKKQIWIH 90 (290)
T ss_pred eEeeECCCCCcHHHHHHHHHHHHhCCCCcc---HHHHHhcCCC-------CCEEEEecCCCCCcCcHHHHHHHHHHHhhC
Confidence 589999999999999999999998754321 2211111111 11100 0111 12233344555555544
Q ss_pred C----ceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 804 P----YSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 804 p----~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
| +.|++||++|+ ++.+.+|+|++.||+- -.+++||+.|+-
T Consensus 91 p~e~~~kv~ii~~ad~-mt~~AaNaLLK~LEEP-----------p~~~~fiL~~~~ 134 (290)
T PRK05917 91 PYESPYKIYIIHEADR-MTLDAISAFLKVLEDP-----------PQHGVIILTSAK 134 (290)
T ss_pred ccCCCceEEEEechhh-cCHHHHHHHHHHhhcC-----------CCCeEEEEEeCC
Confidence 4 46999999999 9999999999999962 257788888874
No 213
>PRK08116 hypothetical protein; Validated
Probab=97.82 E-value=4.6e-05 Score=85.33 Aligned_cols=104 Identities=16% Similarity=0.251 Sum_probs=66.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
.+++|+|++|+|||+||.+|+..+.....+++.++....-... . ..+.+. +......+.+.+... .
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i-----~--~~~~~~-----~~~~~~~~~~~l~~~--d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRI-----K--STYKSS-----GKEDENEIIRSLVNA--D 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH-----H--HHHhcc-----ccccHHHHHHHhcCC--C
Confidence 3699999999999999999999887666677777765421100 0 000000 000112334444443 4
Q ss_pred EEEEccc--ccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 807 VVFLEDL--DKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 807 VI~LDEV--Dkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
+|+|||+ ++ .....+..|..+|+.. +. .+..+|+|||.
T Consensus 181 lLviDDlg~e~-~t~~~~~~l~~iin~r-~~---------~~~~~IiTsN~ 220 (268)
T PRK08116 181 LLILDDLGAER-DTEWAREKVYNIIDSR-YR---------KGLPTIVTTNL 220 (268)
T ss_pred EEEEecccCCC-CCHHHHHHHHHHHHHH-HH---------CCCCEEEECCC
Confidence 9999999 67 7788888999998853 11 12337899996
No 214
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00015 Score=82.93 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.7
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.||||||||+|||+.|+.||+..
T Consensus 386 NilfyGPPGTGKTm~ArelAr~S 408 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHS 408 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhc
Confidence 59999999999999999999876
No 215
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.76 E-value=0.00059 Score=75.61 Aligned_cols=68 Identities=15% Similarity=0.097 Sum_probs=45.3
Q ss_pred HHhhccccccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhc--CCchhhHHHHHHHHHHHHHHHH
Q 001355 977 DFFDQTDAIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAA--TWLSDRKKAIENWIENVVLRSF 1053 (1093)
Q Consensus 977 efl~rId~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~--~~~~~~~r~ie~wve~vl~~~l 1053 (1093)
.|..|+...+.++|++.+++.+.+...+... +......+++++++.|... +|. +.|...+...+....
T Consensus 178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~-----g~~~~~~~~~~~~~~i~~~s~G~p----~~i~~l~~~~~~~a~ 247 (269)
T TIGR03015 178 QLRQRIIASCHLGPLDREETREYIEHRLERA-----GNRDAPVFSEGAFDAIHRFSRGIP----RLINILCDRLLLSAF 247 (269)
T ss_pred HHHhheeeeeeCCCCCHHHHHHHHHHHHHHc-----CCCCCCCcCHHHHHHHHHHcCCcc----cHHHHHHHHHHHHHH
Confidence 5566777789999999999988887766532 2222346899999999976 332 234444554444433
No 216
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=4.2e-05 Score=87.00 Aligned_cols=70 Identities=24% Similarity=0.312 Sum_probs=48.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
.-+|++||+|+|||++|+++|+.. ..+|+.|.++...+ +.||.... .+..++-.-.+-..+
T Consensus 128 kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt~-----------KWfgE~eK-----lv~AvFslAsKl~P~ 188 (386)
T KOG0737|consen 128 KGILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLTS-----------KWFGEAQK-----LVKAVFSLASKLQPS 188 (386)
T ss_pred ccceecCCCCchHHHHHHHHHHHc---CCCcceeeccccch-----------hhHHHHHH-----HHHHHHhhhhhcCcc
Confidence 459999999999999999999976 77899888886321 34443222 112222222233447
Q ss_pred EEEEccccc
Q 001355 807 VVFLEDLDK 815 (1093)
Q Consensus 807 VI~LDEVDk 815 (1093)
+|||||||.
T Consensus 189 iIFIDEvds 197 (386)
T KOG0737|consen 189 IIFIDEVDS 197 (386)
T ss_pred eeehhhHHH
Confidence 999999997
No 217
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=3.6e-05 Score=90.24 Aligned_cols=134 Identities=15% Similarity=0.204 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCce
Q 001355 678 FDPRDYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKL 757 (1093)
Q Consensus 678 ~d~e~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~f 757 (1093)
+|.|=-+.+++++..+|+--+ .++ +.|.. +.--+||+||||||||.|||.|...+-..++..
T Consensus 226 Ld~EFs~IFRRAFAsRvFpp~-vie---------~lGi~--------HVKGiLLyGPPGTGKTLiARqIGkMLNArePKI 287 (744)
T KOG0741|consen 226 LDKEFSDIFRRAFASRVFPPE-VIE---------QLGIK--------HVKGILLYGPPGTGKTLIARQIGKMLNAREPKI 287 (744)
T ss_pred chHHHHHHHHHHHHhhcCCHH-HHH---------HcCcc--------ceeeEEEECCCCCChhHHHHHHHHHhcCCCCcc
Confidence 455544556666666665432 222 12332 112399999999999999999999885544433
Q ss_pred EEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHh----CC---ceEEEEccccccc------------C
Q 001355 758 IHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS----KP---YSVVFLEDLDKAA------------D 818 (1093)
Q Consensus 758 v~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~----~p---~~VI~LDEVDkia------------d 818 (1093)
+|... +. .+|+|..+.-+. ..+.+|-.+ .+ --||+|||||.|+ +
T Consensus 288 --VNGPe---------IL--~KYVGeSE~NvR----~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVh 350 (744)
T KOG0741|consen 288 --VNGPE---------IL--NKYVGESEENVR----KLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVH 350 (744)
T ss_pred --cCcHH---------HH--HHhhcccHHHHH----HHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCcc
Confidence 23221 00 244444332111 222222211 11 1299999999643 4
Q ss_pred HHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 819 PIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 819 ~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
..+.|.|+.-|+ | .-.+.|.++|-.||.
T Consensus 351 D~VVNQLLsKmD-G--------VeqLNNILVIGMTNR 378 (744)
T KOG0741|consen 351 DTVVNQLLSKMD-G--------VEQLNNILVIGMTNR 378 (744)
T ss_pred HHHHHHHHHhcc-c--------HHhhhcEEEEeccCc
Confidence 678888887776 2 224678889988985
No 218
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.71 E-value=9.3e-05 Score=81.22 Aligned_cols=116 Identities=17% Similarity=0.278 Sum_probs=80.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC----Ccccc--CCCccccccccccchhhhHHHHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP----NSIFD--CQNIDFCDCKLRGKVLVDYIYQEFR 801 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~----~si~~--~~~l~G~~~g~~g~~~~~~l~eal~ 801 (1093)
.++|+||+|+||++.+.+|-+.+||.+..-+.++...+...... +.+.. .-....++.|+.-...++.+...+.
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 59999999999999999999999997776677776553221110 00000 0122233445444444444444433
Q ss_pred ---------hCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 802 ---------SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 802 ---------~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
+.++.||+|.|+|+ +..+.|.+|.+.||. .-++..+|+.||.
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~-LT~dAQ~aLRRTMEk-----------Ys~~~RlIl~cns 166 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADE-LTRDAQHALRRTMEK-----------YSSNCRLILVCNS 166 (351)
T ss_pred hhcchhhccccceEEEEEechHh-hhHHHHHHHHHHHHH-----------HhcCceEEEEecC
Confidence 34777999999999 999999999999984 3357889999996
No 219
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.70 E-value=2.1e-05 Score=90.54 Aligned_cols=155 Identities=10% Similarity=0.105 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
-+..|.+.+.-.|+|.+.+..+|.-.+...... ..+.+..-+.++.+||.|.||+||+.|-+.+++.. ..-++..
T Consensus 14 ~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~-~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~----pr~v~~~ 88 (331)
T PF00493_consen 14 IFDRLANSIAPSIYGHEDIKKAILLQLFGGVEK-NDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA----PRSVYTS 88 (331)
T ss_dssp HHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SC-CCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-----SSEEEEE
T ss_pred HHHHHHHHhCCcCcCcHHHHHHHHHHHHhcccc-ccccccccccccceeeccchhhhHHHHHHHHHhhC----CceEEEC
Confidence 566777888889999998776665444322211 01111112456899999999999999998776544 2224444
Q ss_pred cCCccccCCCCccccCCCcccc---ccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCC
Q 001355 762 VSSEQRVSQPNSIFDCQNIDFC---DCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY 838 (1093)
Q Consensus 762 ~s~~~~~~~~~si~~~~~l~G~---~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~ 838 (1093)
....+. .++... ++. .|.-.++ .+++-....+|++|||+|+ ++...+..|.++||.|.+.-.+
T Consensus 89 g~~~s~----------~gLta~~~~d~~-~~~~~le--aGalvlad~GiccIDe~dk-~~~~~~~~l~eaMEqq~isi~k 154 (331)
T PF00493_consen 89 GKGSSA----------AGLTASVSRDPV-TGEWVLE--AGALVLADGGICCIDEFDK-MKEDDRDALHEAMEQQTISIAK 154 (331)
T ss_dssp CCGSTC----------CCCCEEECCCGG-TSSECEE--E-HHHHCTTSEEEECTTTT---CHHHHHHHHHHHCSCEEECT
T ss_pred CCCccc----------CCccceeccccc-cceeEEe--CCchhcccCceeeeccccc-ccchHHHHHHHHHHcCeeccch
Confidence 332110 111111 110 1111111 1333345678999999999 9999999999999999998766
Q ss_pred C-eEee-cCCcEEEEecCC
Q 001355 839 G-RDVS-ISGMIFVATSTI 855 (1093)
Q Consensus 839 G-~~V~-l~naI~IlTSN~ 855 (1093)
+ -... -.++-|++++|.
T Consensus 155 agi~~~l~ar~svlaa~NP 173 (331)
T PF00493_consen 155 AGIVTTLNARCSVLAAANP 173 (331)
T ss_dssp SSSEEEEE---EEEEEE--
T ss_pred hhhcccccchhhhHHHHhh
Confidence 3 1111 124557788885
No 220
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.68 E-value=0.0021 Score=69.68 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=86.8
Q ss_pred cCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCc
Q 001355 694 VGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNS 773 (1093)
Q Consensus 694 ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~s 773 (1093)
++|-+...+.+.+--.+...|... ..+|++|.-|+||+.+.|++...+.+..-.+|.|+-....
T Consensus 62 l~Gvd~qk~~L~~NT~~F~~G~pA---------NnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~------- 125 (287)
T COG2607 62 LVGVDRQKEALVRNTEQFAEGLPA---------NNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA------- 125 (287)
T ss_pred HhCchHHHHHHHHHHHHHHcCCcc---------cceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh-------
Confidence 567777777777777777665532 3699999999999999999999887777777777644311
Q ss_pred cccCCCccccccccccchhhhHHHHHHHhCCce-EEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEe
Q 001355 774 IFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS-VVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVAT 852 (1093)
Q Consensus 774 i~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~-VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlT 852 (1093)
.+-.|.+.++..|.. |||+|+.--=-+....+.|+.+||-|- +-.-.|++|..|
T Consensus 126 ------------------~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v-------e~rP~NVl~YAT 180 (287)
T COG2607 126 ------------------TLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGV-------EGRPANVLFYAT 180 (287)
T ss_pred ------------------hHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCc-------ccCCCeEEEEEe
Confidence 124577788887777 778888643024567788888888443 223458999999
Q ss_pred cCC
Q 001355 853 STI 855 (1093)
Q Consensus 853 SN~ 855 (1093)
||.
T Consensus 181 SNR 183 (287)
T COG2607 181 SNR 183 (287)
T ss_pred cCC
Confidence 995
No 221
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00011 Score=93.15 Aligned_cols=133 Identities=19% Similarity=0.204 Sum_probs=82.0
Q ss_pred cccCccHHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 692 EKVGWQDEAICTISQAVSRWR--------IGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~r--------sg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..|.|-+..+..+-+.+.... .++.+++ -+||+||+|+|||.+|++||..+-..+.. +.+.|.
T Consensus 265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPr--------gvL~~GppGTGkTl~araLa~~~s~~~~k-isffmr 335 (1080)
T KOG0732|consen 265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPR--------GVLFHGPPGTGKTLMARALAAACSRGNRK-ISFFMR 335 (1080)
T ss_pred cccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCc--------ceeecCCCCCchhHHHHhhhhhhcccccc-cchhhh
Confidence 345666666666666664432 2333332 28999999999999999999987544433 334443
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc----------CHHHHHHHhhhhcCCe
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA----------DPIVQSSLTKAISTGK 833 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia----------d~~vq~~Ll~aLe~Gr 833 (1093)
...+-. ..++|..+ ..+..+.+..++...+|||+||||-+| |..+...|+-+|+ |-
T Consensus 336 kgaD~l--------skwvgEaE-----RqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmd-Gl 401 (1080)
T KOG0732|consen 336 KGADCL--------SKWVGEAE-----RQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMD-GL 401 (1080)
T ss_pred cCchhh--------ccccCcHH-----HHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhcc-CC
Confidence 211100 23334322 234667777778888999999999522 3456666777766 21
Q ss_pred EecCCCeEeecCCcEEEEecCC
Q 001355 834 FTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 834 ~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
++. +.+++|-+||.
T Consensus 402 --dsR------gqVvvigATnR 415 (1080)
T KOG0732|consen 402 --DSR------GQVVVIGATNR 415 (1080)
T ss_pred --CCC------CceEEEcccCC
Confidence 222 35678888875
No 222
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00015 Score=81.77 Aligned_cols=130 Identities=16% Similarity=0.113 Sum_probs=77.5
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCc--eEEeecCCccccCCCCc
Q 001355 696 WQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGK--LIHVDVSSEQRVSQPNS 773 (1093)
Q Consensus 696 GQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--fv~id~s~~~~~~~~~s 773 (1093)
+|+.++..+..++.+.+.. -.+||+|| +||+.+|+.+|+.+++.... -.+-.|.........++
T Consensus 6 ~q~~~~~~L~~~~~~~rl~------------hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~H 71 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLN------------HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEF 71 (290)
T ss_pred HHHHHHHHHHHHHHcCCcc------------eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4666777777666654331 24899996 68999999999999875421 11111221110000000
Q ss_pred cccCCCc--cccccccccchhhhHHHHHHHh----CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCc
Q 001355 774 IFDCQNI--DFCDCKLRGKVLVDYIYQEFRS----KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGM 847 (1093)
Q Consensus 774 i~~~~~l--~G~~~g~~g~~~~~~l~eal~~----~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~na 847 (1093)
+.+ +.......+.+.+..+...+.. .++.|++||++|+ |+....|.|++.||+- -.++
T Consensus 72 ----PD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~-m~~~AaNaLLKtLEEP-----------p~~t 135 (290)
T PRK07276 72 ----SDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADK-MHVNAANSLLKVIEEP-----------QSEI 135 (290)
T ss_pred ----CCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhh-cCHHHHHHHHHHhcCC-----------CCCe
Confidence 111 1111112233334444444443 3457999999999 9999999999999962 2467
Q ss_pred EEEEecCC
Q 001355 848 IFVATSTI 855 (1093)
Q Consensus 848 I~IlTSN~ 855 (1093)
+||++|+.
T Consensus 136 ~~iL~t~~ 143 (290)
T PRK07276 136 YIFLLTND 143 (290)
T ss_pred EEEEEECC
Confidence 88888863
No 223
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.00013 Score=80.66 Aligned_cols=112 Identities=12% Similarity=-0.006 Sum_probs=70.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccc-ccc-ccccchhhhHHHHHHHh---
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDF-CDC-KLRGKVLVDYIYQEFRS--- 802 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G-~~~-g~~g~~~~~~l~eal~~--- 802 (1093)
.+||+||.|+||..+|.++|+.+++....-.+-.|........... +.+.- .+. .-.+.+.++.+.+.+..
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~H----PDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKY----NDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCC----CCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 5899999999999999999999887643211111211110000000 11110 111 11333444555554443
Q ss_pred --CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 803 --KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 803 --~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
..+.|++|+++|+ ++....|+|++.||+- -.+++||++|+-
T Consensus 85 e~~~~KV~II~~ae~-m~~~AaNaLLK~LEEP-----------p~~t~fiLit~~ 127 (261)
T PRK05818 85 ESNGKKIYIIYGIEK-LNKQSANSLLKLIEEP-----------PKNTYGIFTTRN 127 (261)
T ss_pred hcCCCEEEEeccHhh-hCHHHHHHHHHhhcCC-----------CCCeEEEEEECC
Confidence 3467999999999 9999999999999962 357889998874
No 224
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.61 E-value=4.5e-05 Score=74.85 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=63.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccC-----CCceEEeecCCccccCCCCccccC-CCccccccc--cccchhhhHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGN-----KGKLIHVDVSSEQRVSQPNSIFDC-QNIDFCDCK--LRGKVLVDYIYQ 798 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs-----~~~fv~id~s~~~~~~~~~si~~~-~~l~G~~~g--~~g~~~~~~l~e 798 (1093)
..++++||+|+|||.+++.+++.+... ..+++.+++...... ..+... ...++.... .......+.+..
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTP---RDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSH---HHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCH---HHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 469999999999999999999876432 456777887653210 000000 001111111 111233467777
Q ss_pred HHHhCCceEEEEccccccc-CHHHHHHHhhhhcC
Q 001355 799 EFRSKPYSVVFLEDLDKAA-DPIVQSSLTKAIST 831 (1093)
Q Consensus 799 al~~~p~~VI~LDEVDkia-d~~vq~~Ll~aLe~ 831 (1093)
.+......+|+|||+|. + +..+.+.|...++.
T Consensus 82 ~l~~~~~~~lviDe~~~-l~~~~~l~~l~~l~~~ 114 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADH-LFSDEFLEFLRSLLNE 114 (131)
T ss_dssp HHHHCTEEEEEEETTHH-HHTHHHHHHHHHHTCS
T ss_pred HHHhcCCeEEEEeChHh-cCCHHHHHHHHHHHhC
Confidence 88877777999999999 9 98899999888873
No 225
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=97.59 E-value=0.00011 Score=67.29 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=62.5
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEE
Q 001355 991 LNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSD-RKKAIENWIENVVLRSFYEVRRKHHFTAGSVVK 1069 (1093)
Q Consensus 991 ld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~~~~~~~~~~Vk 1069 (1093)
|+.+++.+|+..++.+..+++...++.|.+|++++++|+..+|.+. |+|.|+++|++.+.+.|.+.........+..|+
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~v~ 80 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERLKEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAILSGKIKEGDTVR 80 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHHHHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCSCTTCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCEee
Confidence 5678999999999999999998899999999999999999988655 777777777777777777766666655566665
No 226
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.57 E-value=0.002 Score=75.66 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=35.4
Q ss_pred HHHhhccc--cccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCC
Q 001355 976 EDFFDQTD--AIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAATW 1033 (1093)
Q Consensus 976 ~efl~rId--~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~ 1033 (1093)
++|..|+. .++...|.|.+....++.+... ...+.|+++++++|+....
T Consensus 227 ~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~---------~~~~~i~~ev~~~la~~~~ 277 (408)
T COG0593 227 DRLRSRLEWGLVVEIEPPDDETRLAILRKKAE---------DRGIEIPDEVLEFLAKRLD 277 (408)
T ss_pred HHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH---------hcCCCCCHHHHHHHHHHhh
Confidence 45555555 5778899999998888877222 2237899999999998733
No 227
>PF13173 AAA_14: AAA domain
Probab=97.57 E-value=0.00019 Score=71.10 Aligned_cols=84 Identities=14% Similarity=0.271 Sum_probs=56.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
++++.||.|||||++++.+++.+. ....++++|+........ .. . ...+.+.+.. .....+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~----------~~--~-----~~~~~~~~~~-~~~~~~ 64 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRL----------AD--P-----DLLEYFLELI-KPGKKY 64 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHH----------hh--h-----hhHHHHHHhh-ccCCcE
Confidence 689999999999999999998876 556788888876321000 00 0 0112222221 124579
Q ss_pred EEEcccccccCHHHHHHHhhhhcCC
Q 001355 808 VFLEDLDKAADPIVQSSLTKAISTG 832 (1093)
Q Consensus 808 I~LDEVDkiad~~vq~~Ll~aLe~G 832 (1093)
||||||.+ ++ .....+..+.+.+
T Consensus 65 i~iDEiq~-~~-~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 65 IFIDEIQY-LP-DWEDALKFLVDNG 87 (128)
T ss_pred EEEehhhh-hc-cHHHHHHHHHHhc
Confidence 99999999 75 6788888888754
No 228
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.56 E-value=6.5e-05 Score=79.09 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=62.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
.+++|+||+|+|||++|.+|+..+...+.....+++...-.... .. ... .....+...+.+. .
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~-------~~---~~~-----~~~~~~~~~l~~~--d 110 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK-------QS---RSD-----GSYEELLKRLKRV--D 110 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH-------CC---HCC-----TTHCHHHHHHHTS--S
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc-------cc---ccc-----cchhhhcCccccc--c
Confidence 36999999999999999999998877777777777664211000 00 000 1112344555544 4
Q ss_pred EEEEccccccc--CHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 807 VVFLEDLDKAA--DPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 807 VI~LDEVDkia--d~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
+++|||+.. . +......|.++|+... . ++ -.|+|||.
T Consensus 111 lLilDDlG~-~~~~~~~~~~l~~ii~~R~-~---------~~-~tIiTSN~ 149 (178)
T PF01695_consen 111 LLILDDLGY-EPLSEWEAELLFEIIDERY-E---------RK-PTIITSNL 149 (178)
T ss_dssp CEEEETCTS-S---HHHHHCTHHHHHHHH-H---------T--EEEEEESS
T ss_pred Eecccccce-eeecccccccchhhhhHhh-c---------cc-CeEeeCCC
Confidence 999999975 4 4567778888887421 1 12 25679997
No 229
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.54 E-value=0.00017 Score=82.19 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=59.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
.++|+||+|+|||+||.+||..+.........+.+...-... ...++ .+ + ...+.+.+.+. .|
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l--------k~~~~--~~----~-~~~~l~~l~~~--dl 220 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL--------KNSIS--DG----S-VKEKIDAVKEA--PV 220 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH--------HHHHh--cC----c-HHHHHHHhcCC--CE
Confidence 599999999999999999999887655555555554321000 00000 01 1 12334445444 49
Q ss_pred EEEcccccc-cCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 808 VFLEDLDKA-ADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 808 I~LDEVDki-ad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
|+|||+..- ++.-....|+..|-+.|+. .+.-.|+|||.
T Consensus 221 LiIDDiG~e~~s~~~~~~ll~~Il~~R~~---------~~~~ti~TSNl 260 (306)
T PRK08939 221 LMLDDIGAEQMSSWVRDEVLGVILQYRMQ---------EELPTFFTSNF 260 (306)
T ss_pred EEEecCCCccccHHHHHHHHHHHHHHHHH---------CCCeEEEECCC
Confidence 999999640 4455554555544222221 12236899997
No 230
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.53 E-value=0.00036 Score=85.87 Aligned_cols=103 Identities=13% Similarity=0.081 Sum_probs=67.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCcccccc-c--c-ccchhhhHHHHHHHhC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDC-K--L-RGKVLVDYIYQEFRSK 803 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~-g--~-~g~~~~~~l~eal~~~ 803 (1093)
-+++.|+.|+||+.+++.|+.++-. ..+|+.+-.+... ..++|.-+ . . .|... .-.+.+...
T Consensus 27 Gv~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~~t~-----------~~L~Gg~Dl~~~l~~g~~~--~~pGlla~A 92 (584)
T PRK13406 27 GVVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPGIAD-----------DRLLGGLDLAATLRAGRPV--AQRGLLAEA 92 (584)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCCCcH-----------HHccCCchHHhHhhcCCcC--CCCCceeec
Confidence 3899999999999999999998833 3466655544311 12222210 0 0 00000 012344456
Q ss_pred CceEEEEcccccccCHHHHHHHhhhhcCCeEecCC-CeEeecC
Q 001355 804 PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY-GRDVSIS 845 (1093)
Q Consensus 804 p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~-G~~V~l~ 845 (1093)
.++|+||||+.. +++.+++.|+++|++|.++-.. |..+.+.
T Consensus 93 h~GvL~lDe~n~-~~~~~~~aLleame~G~vtIeR~G~s~~~P 134 (584)
T PRK13406 93 DGGVLVLAMAER-LEPGTAARLAAALDTGEVRLERDGLALRLP 134 (584)
T ss_pred cCCEEEecCccc-CCHHHHHHHHHHHhCCcEEEEECCcEEecC
Confidence 678999999999 9999999999999999887643 4444443
No 231
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=97.53 E-value=0.00015 Score=60.44 Aligned_cols=52 Identities=25% Similarity=0.282 Sum_probs=43.6
Q ss_pred HHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhh
Q 001355 23 AVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAF 81 (1093)
Q Consensus 23 A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL 81 (1093)
|+.+|+++||.+++|.|++.+||..++|.+++++.+.+.+ ...|...+...+
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~~~id-------~~~l~~~i~~~l 52 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKKLGID-------PEQLKAAIEKAL 52 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHHTTCH-------HHHHHHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHHcCCC-------HHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999843 455666665544
No 232
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.48 E-value=0.00049 Score=79.27 Aligned_cols=104 Identities=13% Similarity=0.180 Sum_probs=64.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
+|+|+||+|+|||+||.+||..+......+++++....-.... ...+.... . .....+.+.+. .+
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~-------~~~~~~~~-----~-~~~~~~~l~~~--DL 249 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR-------EIRFNNDK-----E-LEEVYDLLINC--DL 249 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH-------HHHhccch-----h-HHHHHHHhccC--CE
Confidence 6999999999999999999998887766777776654211000 00000000 0 01112334333 49
Q ss_pred EEEcccccc-cCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCC
Q 001355 808 VFLEDLDKA-ADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTIL 856 (1093)
Q Consensus 808 I~LDEVDki-ad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~ 856 (1093)
|+|||+... .++..+..|..+|+...-. +.-+|+|||..
T Consensus 250 LIIDDlG~e~~t~~~~~~Lf~iin~R~~~----------~k~tIiTSNl~ 289 (329)
T PRK06835 250 LIIDDLGTEKITEFSKSELFNLINKRLLR----------QKKMIISTNLS 289 (329)
T ss_pred EEEeccCCCCCCHHHHHHHHHHHHHHHHC----------CCCEEEECCCC
Confidence 999999431 5677888888888742111 12268899973
No 233
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.47 E-value=0.0007 Score=81.95 Aligned_cols=150 Identities=11% Similarity=0.079 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
.++.|.+.+...|+|.++++..|.-.+.-...+.. ..+.+-+.++.+||+|.||+||+.|-+.+++++-+. ++..
T Consensus 419 iy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~-~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg----~yTS 493 (804)
T KOG0478|consen 419 IYELLARSIAPSIYELEDVKKGLLLQLFGGTRKED-EKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG----VYTS 493 (804)
T ss_pred HHHHHHHhhchhhhcccchhhhHHHHHhcCCcccc-cccccccccceEEEecCCCcCHHHHHHHHHHhCCcc----eeec
Confidence 45667777888899999988877655543221110 001023467899999999999999999999987322 2211
Q ss_pred cCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeE
Q 001355 762 VSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRD 841 (1093)
Q Consensus 762 ~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~ 841 (1093)
... .+..|-+.|+-.++. ++..+ .=.+++--..++|-.|||||| |....+..|.+.||...
T Consensus 494 GkG-------sSavGLTayVtrd~d--tkqlV-LesGALVLSD~GiCCIDEFDK-M~dStrSvLhEvMEQQT-------- 554 (804)
T KOG0478|consen 494 GKG-------SSAVGLTAYVTKDPD--TRQLV-LESGALVLSDNGICCIDEFDK-MSDSTRSVLHEVMEQQT-------- 554 (804)
T ss_pred CCc-------cchhcceeeEEecCc--cceee-eecCcEEEcCCceEEchhhhh-hhHHHHHHHHHHHHHhh--------
Confidence 111 011111112211111 00100 001233334567999999999 99999999999999754
Q ss_pred eecCCcEEEEecCC
Q 001355 842 VSISGMIFVATSTI 855 (1093)
Q Consensus 842 V~l~naI~IlTSN~ 855 (1093)
+++..|=||+|-|.
T Consensus 555 vSIAKAGII~sLNA 568 (804)
T KOG0478|consen 555 LSIAKAGIIASLNA 568 (804)
T ss_pred hhHhhcceeeeccc
Confidence 55555556776664
No 234
>PRK08181 transposase; Validated
Probab=97.46 E-value=0.00015 Score=81.19 Aligned_cols=100 Identities=17% Similarity=0.280 Sum_probs=61.2
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
.++|+||+|+|||++|.+|+..+......++++.+...-. .+...... .+ ...+...+.+ ..+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~-----------~l~~a~~~---~~-~~~~l~~l~~--~dL 170 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ-----------KLQVARRE---LQ-LESAIAKLDK--FDL 170 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH-----------HHHHHHhC---Cc-HHHHHHHHhc--CCE
Confidence 5999999999999999999988766555555555543110 00000000 01 1223333333 359
Q ss_pred EEEccccccc--CHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCC
Q 001355 808 VFLEDLDKAA--DPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTIL 856 (1093)
Q Consensus 808 I~LDEVDkia--d~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~ 856 (1093)
|+|||++. . +...+..|.++|+. +... . -+|+|||..
T Consensus 171 LIIDDlg~-~~~~~~~~~~Lf~lin~-R~~~---------~-s~IiTSN~~ 209 (269)
T PRK08181 171 LILDDLAY-VTKDQAETSVLFELISA-RYER---------R-SILITANQP 209 (269)
T ss_pred EEEecccc-ccCCHHHHHHHHHHHHH-HHhC---------C-CEEEEcCCC
Confidence 99999986 4 45667789999973 2111 1 268889973
No 235
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.43 E-value=0.00036 Score=67.20 Aligned_cols=94 Identities=19% Similarity=0.374 Sum_probs=57.8
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCC-----CceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhC
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNK-----GKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSK 803 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~-----~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~ 803 (1093)
+.|+||+|+|||.+|+.|++.+.... ..+...+.. +.+..-..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~------------------------------~~~w~gY~-- 48 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPG------------------------------DKFWDGYQ-- 48 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCc------------------------------cchhhccC--
Confidence 47899999999999999998775321 111110000 11111111
Q ss_pred CceEEEEcccccccCH----HHHHHHhhhhcCCeEecCC----CeEeecCCcEEEEecCC
Q 001355 804 PYSVVFLEDLDKAADP----IVQSSLTKAISTGKFTDSY----GRDVSISGMIFVATSTI 855 (1093)
Q Consensus 804 p~~VI~LDEVDkiad~----~vq~~Ll~aLe~Gr~~d~~----G~~V~l~naI~IlTSN~ 855 (1093)
.+.|+++||+.. ... .....|+++++...+.-.. .+...+.--+||+|||.
T Consensus 49 ~q~vvi~DD~~~-~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 49 GQPVVIIDDFGQ-DNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred CCcEEEEeecCc-cccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 235999999998 653 3677888999887665421 11134444678888883
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.41 E-value=0.00058 Score=75.46 Aligned_cols=103 Identities=7% Similarity=0.135 Sum_probs=61.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
+++|+|++|+|||++|.+|+..+......++.+++...-... ...+.. .+ .....+...+.. ..+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l--------~~~~~~-~~----~~~~~~l~~l~~--~dl 165 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM--------KDTFSN-SE----TSEEQLLNDLSN--VDL 165 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH--------HHHHhh-cc----ccHHHHHHHhcc--CCE
Confidence 699999999999999999999887666677777665421100 000000 00 011234444443 459
Q ss_pred EEEcccccccCH-HHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 808 VFLEDLDKAADP-IVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 808 I~LDEVDkiad~-~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
|+|||++..... -.+..|.++|+. ++.. +.-+|+|||.
T Consensus 166 LvIDDig~~~~s~~~~~~l~~Ii~~-Ry~~---------~~~tiitSNl 204 (244)
T PRK07952 166 LVIDEIGVQTESRYEKVIINQIVDR-RSSS---------KRPTGMLTNS 204 (244)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHH-HHhC---------CCCEEEeCCC
Confidence 999999872222 334467777764 3221 2236889997
No 237
>PRK06526 transposase; Provisional
Probab=97.36 E-value=0.00016 Score=80.33 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=59.2
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccc-cccccccchhhhHHHHHHHhCCce
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDF-CDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G-~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
.++|+||+|+|||++|.+|+..+...+.....+.+...-. .+.. ...+ .....+ ..+ ....
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~-----------~l~~~~~~~----~~~~~l-~~l--~~~d 161 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVA-----------RLAAAHHAG----RLQAEL-VKL--GRYP 161 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHH-----------HHHHHHhcC----cHHHHH-HHh--ccCC
Confidence 5999999999999999999987765444433333332100 0000 0011 111122 222 2346
Q ss_pred EEEEccccccc--CHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCC
Q 001355 807 VVFLEDLDKAA--DPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTIL 856 (1093)
Q Consensus 807 VI~LDEVDkia--d~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~ 856 (1093)
+|+|||++. . +...++.|.++++... . +.-+|+|||..
T Consensus 162 lLIIDD~g~-~~~~~~~~~~L~~li~~r~-~----------~~s~IitSn~~ 201 (254)
T PRK06526 162 LLIVDEVGY-IPFEPEAANLFFQLVSSRY-E----------RASLIVTSNKP 201 (254)
T ss_pred EEEEccccc-CCCCHHHHHHHHHHHHHHH-h----------cCCEEEEcCCC
Confidence 999999997 5 5788888999987421 1 11278889973
No 238
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00056 Score=82.82 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=66.9
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhH-HHHHHHhCC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDY-IYQEFRSKP 804 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~-l~eal~~~p 804 (1093)
+.-+|++||+|+|||.+++++|+.. ...++.+++...-. .+-|.. ...+.. |.++.+...
T Consensus 218 prg~Ll~gppg~Gkt~l~~aVa~e~---~a~~~~i~~peli~-----------k~~gEt-----e~~LR~~f~~a~k~~~ 278 (693)
T KOG0730|consen 218 PRGLLLYGPPGTGKTFLVRAVANEY---GAFLFLINGPELIS-----------KFPGET-----ESNLRKAFAEALKFQV 278 (693)
T ss_pred CCCccccCCCCCChHHHHHHHHHHh---CceeEecccHHHHH-----------hcccch-----HHHHHHHHHHHhccCC
Confidence 3458999999999999999999876 45667777664211 111111 122334 444444443
Q ss_pred ceEEEEccccccc---------CHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 805 YSVVFLEDLDKAA---------DPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 805 ~~VI~LDEVDkia---------d~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.++|||||+|.|+ ...+-..|+.+++.-. .-++.|+|.++|.
T Consensus 279 psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~---------~~~~vivl~atnr 329 (693)
T KOG0730|consen 279 PSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK---------PDAKVIVLAATNR 329 (693)
T ss_pred CeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc---------CcCcEEEEEecCC
Confidence 7999999999856 3456667777776322 2257788898886
No 239
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.00051 Score=76.38 Aligned_cols=101 Identities=18% Similarity=0.254 Sum_probs=61.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
.++|+||+|||||+||-+|+..+...+.+.+.+.....-. .+... +........|...+.+. .|
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~-----------~Lk~~---~~~~~~~~~l~~~l~~~--dl 170 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS-----------KLKAA---FDEGRLEEKLLRELKKV--DL 170 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH-----------HHHHH---HhcCchHHHHHHHhhcC--CE
Confidence 4999999999999999999998875556666666554210 00000 00001223445545443 49
Q ss_pred EEEcccccc-cCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 808 VFLEDLDKA-ADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 808 I~LDEVDki-ad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
++|||+... .+....+.|.++|..-.. +... |+|||.
T Consensus 171 LIiDDlG~~~~~~~~~~~~~q~I~~r~~----------~~~~-~~tsN~ 208 (254)
T COG1484 171 LIIDDIGYEPFSQEEADLLFQLISRRYE----------SRSL-IITSNL 208 (254)
T ss_pred EEEecccCccCCHHHHHHHHHHHHHHHh----------hccc-eeecCC
Confidence 999999750 345567777777764221 1233 899996
No 240
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.28 E-value=0.00087 Score=74.25 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=45.0
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.+.++||-.|-.+..-.+.-.+.|.- .+-.+|+.|++|+|||.+|..+++.+ |...+|..+..+.
T Consensus 39 s~GmVGQ~~AR~Aagvi~kmi~egki--------aGraiLiaG~pgtGKtAiAmg~sksL-G~~tpF~~i~gSE 103 (454)
T KOG2680|consen 39 SEGMVGQVKARKAAGVILKMIREGKI--------AGRAILIAGQPGTGKTAIAMGMSKSL-GDDTPFTSISGSE 103 (454)
T ss_pred cccchhhHHHHHHhHHHHHHHHcCcc--------cceEEEEecCCCCCceeeeeehhhhh-CCCCceeeeecce
Confidence 46689998775544333333333211 22369999999999999999999988 6677887776554
No 241
>PRK06921 hypothetical protein; Provisional
Probab=97.20 E-value=0.00045 Score=77.36 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=29.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccC-CCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGN-KGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs-~~~fv~id~ 762 (1093)
.+++|+|++|+|||+||.+|+..+... ....+++..
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 479999999999999999999988654 455555554
No 242
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00093 Score=83.52 Aligned_cols=115 Identities=22% Similarity=0.309 Sum_probs=78.6
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCC-------CceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNK-------GKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~-------~~fv~id~s~ 764 (1093)
.-|+|.++-|+.+.+.+.+... + .-+|.|++|||||.++.-||..+.... ..++.+||+.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K--------N-----NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~ 236 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK--------N-----NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS 236 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC--------C-----CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH
Confidence 4589999777776666543321 1 237899999999999999998775433 3367777775
Q ss_pred ccccCCCCccccCCCccccccccccc--hhhhHHHHHHHhCCceEEEEcccccccC--------HHHHHHHhhhhcCCeE
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGK--VLVDYIYQEFRSKPYSVVFLEDLDKAAD--------PIVQSSLTKAISTGKF 834 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~--~~~~~l~eal~~~p~~VI~LDEVDkiad--------~~vq~~Ll~aLe~Gr~ 834 (1093)
... .. +|+|. .-+..+.+.+++.+.-|+|||||+.|.. .+.-|.|+.++..|.+
T Consensus 237 LvA---------Ga-------kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL 300 (786)
T COG0542 237 LVA---------GA-------KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGEL 300 (786)
T ss_pred Hhc---------cc-------cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCe
Confidence 211 12 34442 2234456667777778999999985331 5688999999999877
Q ss_pred e
Q 001355 835 T 835 (1093)
Q Consensus 835 ~ 835 (1093)
.
T Consensus 301 ~ 301 (786)
T COG0542 301 R 301 (786)
T ss_pred E
Confidence 6
No 243
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.19 E-value=0.015 Score=70.93 Aligned_cols=58 Identities=10% Similarity=0.216 Sum_probs=37.6
Q ss_pred cChHHHhhccc-cccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhc
Q 001355 973 AWLEDFFDQTD-AIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAA 1031 (1093)
Q Consensus 973 ~~~~efl~rId-~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~ 1031 (1093)
.|.+++++... .+|.|+|+...-|.+.+...+........+.. ...-..++++.|+..
T Consensus 194 L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~-~~p~~~~~l~~I~~~ 252 (519)
T PF03215_consen 194 LFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKN-KVPDKQSVLDSIAES 252 (519)
T ss_pred ccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCc-cCCChHHHHHHHHHh
Confidence 56777877655 57999999998888777776665433332221 122224578888865
No 244
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.02 E-value=0.0018 Score=77.95 Aligned_cols=144 Identities=14% Similarity=0.101 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceE
Q 001355 679 DPRDYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLI 758 (1093)
Q Consensus 679 d~e~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv 758 (1093)
+..-++.|...|.-.|+|++.+...|.-.+.-.-.... ..+-.-++|+.+++.|.||+||+.+-++.+..+-++ .++
T Consensus 332 ~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a-~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~--vYt 408 (764)
T KOG0480|consen 332 DENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSA-GEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS--VYT 408 (764)
T ss_pred CchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccC-CCCccccCCceEEEeCCCCccHHHHHHHHhccCCcc--eEe
Confidence 44456788889999999999988877765543221111 112223688999999999999999999888765321 222
Q ss_pred EeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCC
Q 001355 759 HVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY 838 (1093)
Q Consensus 759 ~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~ 838 (1093)
+-..++..+... ..+-.++. | +|. .=++|+--...+|-.|||+|| ||..-|.+|.+|||...+...+
T Consensus 409 sGkaSSaAGLTa--------aVvkD~es--g-df~-iEAGALmLADnGICCIDEFDK-Md~~dqvAihEAMEQQtISIaK 475 (764)
T KOG0480|consen 409 SGKASSAAGLTA--------AVVKDEES--G-DFT-IEAGALMLADNGICCIDEFDK-MDVKDQVAIHEAMEQQTISIAK 475 (764)
T ss_pred cCcccccccceE--------EEEecCCC--C-cee-eecCcEEEccCceEEechhcc-cChHhHHHHHHHHHhheehhee
Confidence 222222111000 00000000 0 110 002333334567999999999 9999999999999988776554
No 245
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.00 E-value=0.002 Score=68.83 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=24.1
Q ss_pred HHhhccccccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhc
Q 001355 977 DFFDQTDAIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAA 1031 (1093)
Q Consensus 977 efl~rId~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~ 1031 (1093)
.++++... +..+||+.++..+.+...+.+. ..+.++++.++.|...
T Consensus 178 ~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 178 PLFGRFSH-IELKPLSKEEAREFLKELFKEL--------IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp TTTT---E-EEE----HHHHHHHHHHHHHCC--------------HHHHHHHHHH
T ss_pred ccccccce-EEEeeCCHHHHHHHHHHHHHHh--------hcccCCHHHHHHHHHH
Confidence 45667776 9999999999888887655432 2235688888888763
No 246
>PRK09183 transposase/IS protein; Provisional
Probab=96.99 E-value=0.0009 Score=74.64 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=58.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCcccc-ccccccchhhhHHHHHHHhCCce
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFC-DCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~-~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
.++|+||+|+|||++|.+|+.........+..+++...-. .+... ..+ .....+...+ ....
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~-----------~l~~a~~~~----~~~~~~~~~~--~~~d 166 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL-----------QLSTAQRQG----RYKTTLQRGV--MAPR 166 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH-----------HHHHHHHCC----cHHHHHHHHh--cCCC
Confidence 5889999999999999999877654444444444332110 00000 000 1111122222 2335
Q ss_pred EEEEcccccc-cCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCC
Q 001355 807 VVFLEDLDKA-ADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTIL 856 (1093)
Q Consensus 807 VI~LDEVDki-ad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~ 856 (1093)
+++|||++.+ .+...++.|.++++... . +.. +|+|||..
T Consensus 167 lLiiDdlg~~~~~~~~~~~lf~li~~r~-~---------~~s-~iiTsn~~ 206 (259)
T PRK09183 167 LLIIDEIGYLPFSQEEANLFFQVIAKRY-E---------KGS-MILTSNLP 206 (259)
T ss_pred EEEEcccccCCCChHHHHHHHHHHHHHH-h---------cCc-EEEecCCC
Confidence 9999999862 35566678888886421 1 112 68899974
No 247
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00089 Score=78.65 Aligned_cols=71 Identities=25% Similarity=0.338 Sum_probs=47.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
-+|+.||+|+|||+++++||-.. ...|..|..+... ..|.|.. ...+..+...-+....+|
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~---~atff~iSassLt-----------sK~~Ge~-----eK~vralf~vAr~~qPsv 248 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATES---GATFFNISASSLT-----------SKYVGES-----EKLVRALFKVARSLQPSV 248 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhh---cceEeeccHHHhh-----------hhccChH-----HHHHHHHHHHHHhcCCeE
Confidence 48999999999999999999766 4555544433321 2333332 123445555556667799
Q ss_pred EEEccccccc
Q 001355 808 VFLEDLDKAA 817 (1093)
Q Consensus 808 I~LDEVDkia 817 (1093)
||+||||+++
T Consensus 249 ifidEidsll 258 (428)
T KOG0740|consen 249 IFIDEIDSLL 258 (428)
T ss_pred EEechhHHHH
Confidence 9999999733
No 248
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.015 Score=71.26 Aligned_cols=75 Identities=23% Similarity=0.256 Sum_probs=50.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCC-ceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKG-KLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~-~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
.+++.||.|+|||.++++|...++.... -+..++|+.... ..-...-+.....+.+++...| +
T Consensus 433 ~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~---------------~~~e~iQk~l~~vfse~~~~~P-S 496 (952)
T KOG0735|consen 433 NILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDG---------------SSLEKIQKFLNNVFSEALWYAP-S 496 (952)
T ss_pred cEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccc---------------hhHHHHHHHHHHHHHHHHhhCC-c
Confidence 6999999999999999999998863322 244577775321 1001111222345666776666 8
Q ss_pred EEEEcccccccC
Q 001355 807 VVFLEDLDKAAD 818 (1093)
Q Consensus 807 VI~LDEVDkiad 818 (1093)
||+||++|-|++
T Consensus 497 iIvLDdld~l~~ 508 (952)
T KOG0735|consen 497 IIVLDDLDCLAS 508 (952)
T ss_pred EEEEcchhhhhc
Confidence 999999998554
No 249
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.93 E-value=0.0024 Score=78.15 Aligned_cols=77 Identities=17% Similarity=0.360 Sum_probs=57.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHh-----
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS----- 802 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~----- 802 (1093)
.+||+||+|.|||++|+.||+.- +-.++.||.+..-. +..+-.++..++..
T Consensus 328 ilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt---------------------~~~v~~kI~~avq~~s~l~ 383 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERT---------------------APMVKEKIENAVQNHSVLD 383 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhc---CceEEEeccccccc---------------------HHHHHHHHHHHHhhccccc
Confidence 69999999999999999999976 56677788774210 11222455555542
Q ss_pred ---CCceEEEEcccccccCHHHHHHHhhhhc
Q 001355 803 ---KPYSVVFLEDLDKAADPIVQSSLTKAIS 830 (1093)
Q Consensus 803 ---~p~~VI~LDEVDkiad~~vq~~Ll~aLe 830 (1093)
+| ..+++||||- +++.+.+.|+.++.
T Consensus 384 adsrP-~CLViDEIDG-a~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 384 ADSRP-VCLVIDEIDG-APRAAVDVILSLVK 412 (877)
T ss_pred cCCCc-ceEEEecccC-CcHHHHHHHHHHHH
Confidence 23 3678999999 99999999998887
No 250
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=0.0037 Score=73.35 Aligned_cols=125 Identities=13% Similarity=0.081 Sum_probs=74.2
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCC--ceEEeecCCcccc
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKG--KLIHVDVSSEQRV 768 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~--~fv~id~s~~~~~ 768 (1093)
...++|.+.-+..+-..+..+..+. ..+.+.+.|-||+|||.+-..+-..+-.... ..++++|.+...
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~---------t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~- 218 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELN---------TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTE- 218 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcc---------cCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccc-
Confidence 3578999999998888888886532 2346999999999999987644433322222 347888875322
Q ss_pred CCCCccccCCCccccc-----cccccchhhhHHHHHHHhCC-ceEEEEcccccccCHHHHHHHhhhhc
Q 001355 769 SQPNSIFDCQNIDFCD-----CKLRGKVLVDYIYQEFRSKP-YSVVFLEDLDKAADPIVQSSLTKAIS 830 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~-----~g~~g~~~~~~l~eal~~~p-~~VI~LDEVDkiad~~vq~~Ll~aLe 830 (1093)
...++ .+.++.- .+-.|..+...|......+. --|+++||+|+ +...-|..|..+++
T Consensus 219 --~~aiF--~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~-L~tr~~~vLy~lFe 281 (529)
T KOG2227|consen 219 --ASAIF--KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDH-LITRSQTVLYTLFE 281 (529)
T ss_pred --hHHHH--HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhH-Hhhcccceeeeehh
Confidence 11121 1111110 00012233445555554443 34899999999 66555556655555
No 251
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.0065 Score=69.18 Aligned_cols=104 Identities=9% Similarity=-0.056 Sum_probs=63.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHh-----
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS----- 802 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~----- 802 (1093)
..||+|+.|.||+.+|+.+++.+++....- ++-..... + -.++....+..+.+.+..+.+.+.-
T Consensus 20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~--~~~~~~p~----n-----~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~ 88 (299)
T PRK07132 20 SFLLKSNYNEDIDEKILYFLNKFNNLQITN--LNEQELPA----N-----IILFDIFDKDLSKSEFLSAINKLYFSSFVQ 88 (299)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCcCCCC--CCCCCCCc----c-----eEEeccCCCcCCHHHHHHHHHHhccCCccc
Confidence 589999999999999999999986532110 00000000 0 0000000011111222333333322
Q ss_pred CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecC
Q 001355 803 KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATST 854 (1093)
Q Consensus 803 ~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN 854 (1093)
.++.|++||++|+ ++...++.|++.||+- -.+++||++|+
T Consensus 89 ~~~KvvII~~~e~-m~~~a~NaLLK~LEEP-----------p~~t~~il~~~ 128 (299)
T PRK07132 89 SQKKILIIKNIEK-TSNSLLNALLKTIEEP-----------PKDTYFLLTTK 128 (299)
T ss_pred CCceEEEEecccc-cCHHHHHHHHHHhhCC-----------CCCeEEEEEeC
Confidence 3567999999999 9999999999999962 24678888776
No 252
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0029 Score=74.81 Aligned_cols=86 Identities=15% Similarity=0.259 Sum_probs=54.9
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
-..+||.||+|+|||.+|-.||... .-|||.+=-. ..++|..+. .--.++..+++-.-+.|-
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S---~FPFvKiiSp--------------e~miG~sEs-aKc~~i~k~F~DAYkS~l 599 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSS---DFPFVKIISP--------------EDMIGLSES-AKCAHIKKIFEDAYKSPL 599 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhc---CCCeEEEeCh--------------HHccCccHH-HHHHHHHHHHHHhhcCcc
Confidence 3679999999999999999999754 6678776322 122333221 000123334444446788
Q ss_pred eEEEEcccccccC-----HHHHHHHhhhh
Q 001355 806 SVVFLEDLDKAAD-----PIVQSSLTKAI 829 (1093)
Q Consensus 806 ~VI~LDEVDkiad-----~~vq~~Ll~aL 829 (1093)
+||++|+||++.| |.+-|.++|+|
T Consensus 600 siivvDdiErLiD~vpIGPRfSN~vlQaL 628 (744)
T KOG0741|consen 600 SIIVVDDIERLLDYVPIGPRFSNLVLQAL 628 (744)
T ss_pred eEEEEcchhhhhcccccCchhhHHHHHHH
Confidence 9999999998554 45555555554
No 253
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.81 E-value=0.0017 Score=78.69 Aligned_cols=53 Identities=26% Similarity=0.220 Sum_probs=45.3
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
++.++|+++++..|...+.....|+..++ ..++|.||+|+|||.||+.|++.+
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~-------~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKK-------QILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCC-------ceEEEecCCCCCchHHHHHHHHHH
Confidence 34589999999999999988877775431 369999999999999999999977
No 254
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.78 E-value=0.006 Score=68.64 Aligned_cols=116 Identities=23% Similarity=0.306 Sum_probs=66.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
++||+||+|+|||.+++.+-+.+....-....++++..........+.+ ..+ ..-+|..+ +. ..+...|
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie-~~l----~k~~~~~~-----gP-~~~k~lv 103 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIE-SKL----EKRRGRVY-----GP-PGGKKLV 103 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCC-TTE----CECTTEEE-----EE-ESSSEEE
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHh-hcE----EcCCCCCC-----CC-CCCcEEE
Confidence 6999999999999999876554432221234566665332110000000 000 00011111 00 1223469
Q ss_pred EEEcccccccC------HHHHHHHhhhhcCCeEecCCC-eEeecCCcEEEEecCC
Q 001355 808 VFLEDLDKAAD------PIVQSSLTKAISTGKFTDSYG-RDVSISGMIFVATSTI 855 (1093)
Q Consensus 808 I~LDEVDkiad------~~vq~~Ll~aLe~Gr~~d~~G-~~V~l~naI~IlTSN~ 855 (1093)
+||||+.- .. ......|.|.|+.|-+.|... .-..+.++.||++++.
T Consensus 104 ~fiDDlN~-p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p 157 (272)
T PF12775_consen 104 LFIDDLNM-PQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNP 157 (272)
T ss_dssp EEEETTT--S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESS
T ss_pred EEecccCC-CCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCC
Confidence 99999975 42 235688999999999988643 4567788889998885
No 255
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.77 E-value=0.0016 Score=77.99 Aligned_cols=152 Identities=11% Similarity=0.046 Sum_probs=89.8
Q ss_pred HHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccc
Q 001355 688 IALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQR 767 (1093)
Q Consensus 688 ~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~ 767 (1093)
..+--.|+|+.++..+||-++.......-. .+..-++++.+||+|.||+||+.+-|..++... ..++.-..+.
T Consensus 445 aSiaPsIyGh~~VK~AvAlaLfGGv~kn~~-~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~---RAV~tTGqGA--- 517 (854)
T KOG0477|consen 445 ASIAPSIYGHEDVKRAVALALFGGVPKNPG-GKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSP---RAVFTTGQGA--- 517 (854)
T ss_pred HhhCchhhchHHHHHHHHHHHhcCCccCCC-CCceeccceeEEEecCCCccHHHHHHHHHhcCc---ceeEeccCCc---
Confidence 344457999999999998887654321111 112236789999999999999999998887542 2221111110
Q ss_pred cCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCC-CeEee-cC
Q 001355 768 VSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY-GRDVS-IS 845 (1093)
Q Consensus 768 ~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~-G~~V~-l~ 845 (1093)
++ .|-+.++-.++ +++.. ..=.+|+--...+|-+|||+|| |+.+-...+-++||...+..++ |-.-. -.
T Consensus 518 ----Sa-vGLTa~v~KdP--vtrEW-TLEaGALVLADkGvClIDEFDK-MndqDRtSIHEAMEQQSISISKAGIVtsLqA 588 (854)
T KOG0477|consen 518 ----SA-VGLTAYVRKDP--VTREW-TLEAGALVLADKGVCLIDEFDK-MNDQDRTSIHEAMEQQSISISKAGIVTSLQA 588 (854)
T ss_pred ----cc-cceeEEEeeCC--cccee-eeccCeEEEccCceEEeehhhh-hcccccchHHHHHHhcchhhhhhhHHHHHHh
Confidence 00 00011111111 00000 0001233334567999999999 9999999999999998877665 31111 13
Q ss_pred CcEEEEecCC
Q 001355 846 GMIFVATSTI 855 (1093)
Q Consensus 846 naI~IlTSN~ 855 (1093)
.+.+|+++|.
T Consensus 589 rctvIAAanP 598 (854)
T KOG0477|consen 589 RCTVIAAANP 598 (854)
T ss_pred hhhhheecCC
Confidence 4668899986
No 256
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=96.72 E-value=0.0046 Score=72.82 Aligned_cols=135 Identities=13% Similarity=0.074 Sum_probs=76.7
Q ss_pred HHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 685 TLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 685 ~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.+.+.+.-.|+|..++..+|+-.+.-.-. ..-|.+-..++|+.+||.|.||+.|+.+-+-+-+.. | |.+--+.
T Consensus 324 ~is~sIAPSIfG~~DiKkAiaClLFgGsr-K~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs-----P-IaVYTSG 396 (729)
T KOG0481|consen 324 RISKSIAPSIFGHEDIKKAIACLLFGGSR-KRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS-----P-IAVYTSG 396 (729)
T ss_pred HHhhccCchhcCchhHHHHHHHHhhcCcc-ccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC-----c-eEEEecC
Confidence 34445556799999999988866542211 111222234678999999999999999988765432 2 1111111
Q ss_pred ccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEe
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFT 835 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~ 835 (1093)
-. +|..|-+.-+-.++. +..+. .=.+++--..++|+.|||+|| |..+-.-++-++||...+.
T Consensus 397 KG-----SSAAGLTASV~RD~~--tReFy-lEGGAMVLADgGVvCIDEFDK-Mre~DRVAIHEAMEQQTIS 458 (729)
T KOG0481|consen 397 KG-----SSAAGLTASVIRDPS--TREFY-LEGGAMVLADGGVVCIDEFDK-MREDDRVAIHEAMEQQTIS 458 (729)
T ss_pred CC-----cccccceeeEEecCC--cceEE-EecceEEEecCCEEEeehhhc-cCchhhhHHHHHHHhhhHH
Confidence 00 010000000001111 00000 000122234568999999999 9999999999999976544
No 257
>PF05729 NACHT: NACHT domain
Probab=96.71 E-value=0.0042 Score=62.83 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=59.7
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCC------ceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKG------KLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR 801 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~------~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~ 801 (1093)
.++++|++|+|||.+++.++..+..... -.+.+.+...........+.. .+...... ........+.....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~~-~~~~~~~~~~~~~~ 78 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLAD--LLFDQLPE-SIAPIEELLQELLE 78 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHH--HHHHhhcc-chhhhHHHHHHHHH
Confidence 4899999999999999999977654431 123444444322111001100 00000000 00111123344556
Q ss_pred hCCceEEEEcccccccCHHH--------HHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 802 SKPYSVVFLEDLDKAADPIV--------QSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 802 ~~p~~VI~LDEVDkiad~~v--------q~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
..+..+|+||.+|. +.... ...|.+.+.... ..++-+|+||..
T Consensus 79 ~~~~~llilDglDE-~~~~~~~~~~~~~~~~l~~l~~~~~----------~~~~~liit~r~ 129 (166)
T PF05729_consen 79 KNKRVLLILDGLDE-LEEQDQSQERQRLLDLLSQLLPQAL----------PPGVKLIITSRP 129 (166)
T ss_pred cCCceEEEEechHh-cccchhhhHHHHHHHHHHHHhhhcc----------CCCCeEEEEEcC
Confidence 67777999999999 65432 234555555311 234557777763
No 258
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.67 E-value=0.0078 Score=60.41 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=29.1
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
++++|++|+|||.++..++........+.+.+++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 689999999999999999987755556666776654
No 259
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=96.64 E-value=0.011 Score=64.92 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=62.3
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEE
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVV 808 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI 808 (1093)
-.+.||+|+|||++.+.||+.+ ...++.++|+...+. ....+.+.+.... +.-+
T Consensus 35 ~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~~---------------------~~l~ril~G~~~~--GaW~ 88 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMDY---------------------QSLSRILKGLAQS--GAWL 88 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS-H---------------------HHHHHHHHHHHHH--T-EE
T ss_pred CCCcCCCCCCchhHHHHHHHHh---CCeEEEecccccccH---------------------HHHHHHHHHHhhc--Cchh
Confidence 3679999999999999999988 678889999863210 0122345555543 5789
Q ss_pred EEcccccccCHHHHHHHhhhh-------cCC--eEecCCCeEeecCC-cEEEEecCC
Q 001355 809 FLEDLDKAADPIVQSSLTKAI-------STG--KFTDSYGRDVSISG-MIFVATSTI 855 (1093)
Q Consensus 809 ~LDEVDkiad~~vq~~Ll~aL-------e~G--r~~d~~G~~V~l~n-aI~IlTSN~ 855 (1093)
.|||+++ ++.++...+.+.| .++ ++. ..|+++.+.+ +-|.+|.|.
T Consensus 89 cfdefnr-l~~~vLS~i~~~i~~i~~al~~~~~~~~-~~g~~i~l~~~~~iFiT~np 143 (231)
T PF12774_consen 89 CFDEFNR-LSEEVLSVISQQIQSIQDALRAKQKSFT-LEGQEIKLNPNCGIFITMNP 143 (231)
T ss_dssp EEETCCC-SSHHHHHHHHHHHHHHHHHHHCTSSEEE-ETTCEEE--TT-EEEEEE-B
T ss_pred hhhhhhh-hhHHHHHHHHHHHHHHHHhhcccccccc-cCCCEEEEccceeEEEeecc
Confidence 9999999 9988777665444 332 222 2456666654 334556675
No 260
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.48 E-value=0.011 Score=69.83 Aligned_cols=97 Identities=20% Similarity=0.242 Sum_probs=61.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHH-hccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 728 WLAFLGPDKVGKKKIASALAEI-VFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~-lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
.+++.||+|||||++|.+|+.. .+-+. .|+.+ ..++.. ......+.+ ....
T Consensus 211 Nli~lGp~GTGKThla~~l~~~~a~~sG-~f~T~-----------------a~Lf~~--------L~~~~lg~v--~~~D 262 (449)
T TIGR02688 211 NLIELGPKGTGKSYIYNNLSPYVILISG-GTITV-----------------AKLFYN--------ISTRQIGLV--GRWD 262 (449)
T ss_pred cEEEECCCCCCHHHHHHHHhHHHHHHcC-CcCcH-----------------HHHHHH--------HHHHHHhhh--ccCC
Confidence 5999999999999999998866 22121 11110 011110 001122222 2345
Q ss_pred EEEEccccccc----CHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 807 VVFLEDLDKAA----DPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 807 VI~LDEVDkia----d~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
+|+|||+.. . +.+..+.|+..|++|.|.... ..-..++=+||..|.
T Consensus 263 lLI~DEvgy-lp~~~~~~~v~imK~yMesg~fsRG~--~~~~a~as~vfvGNi 312 (449)
T TIGR02688 263 VVAFDEVAT-LKFAKPKELIGILKNYMESGSFTRGD--ETKSSDASFVFLGNV 312 (449)
T ss_pred EEEEEcCCC-CcCCchHHHHHHHHHHHHhCceeccc--eeeeeeeEEEEEccc
Confidence 999999987 4 345788999999999999744 333356668887786
No 261
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.41 E-value=0.019 Score=61.46 Aligned_cols=96 Identities=14% Similarity=0.229 Sum_probs=55.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccC-CCceEEeecCCccccCCCCccccCCCcc-ccccccccchhhhHHHHHHHhCCc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGN-KGKLIHVDVSSEQRVSQPNSIFDCQNID-FCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs-~~~fv~id~s~~~~~~~~~si~~~~~l~-G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
.+++.||+|+|||++.++|...+... ...++.+.-.. +...... ..++ ....+....++.+.+..+++..|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~--E~~~~~~----~~~i~q~~vg~~~~~~~~~i~~aLr~~p- 75 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI--EFVHESK----RSLINQREVGLDTLSFENALKAALRQDP- 75 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc--cccccCc----cceeeecccCCCccCHHHHHHHHhcCCc-
Confidence 68999999999999999988877422 22233332211 0000000 0010 01112112345567777887776
Q ss_pred eEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 806 SVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 806 ~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
.+|++||+.. .+....++++..+|.
T Consensus 76 d~ii~gEird---~e~~~~~l~~a~~G~ 100 (198)
T cd01131 76 DVILVGEMRD---LETIRLALTAAETGH 100 (198)
T ss_pred CEEEEcCCCC---HHHHHHHHHHHHcCC
Confidence 6999999843 566677777777653
No 262
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=96.38 E-value=0.0043 Score=69.88 Aligned_cols=119 Identities=21% Similarity=0.223 Sum_probs=70.9
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCC---ceEEeecCCccccC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKG---KLIHVDVSSEQRVS 769 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~---~fv~id~s~~~~~~ 769 (1093)
.|++|++.+..+.+. .+..+ - + .+||+||||+|||....+.|+.+++... .+...+.+...
T Consensus 42 dv~~~~ei~st~~~~-----~~~~~--l---P---h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r--- 105 (360)
T KOG0990|consen 42 IVIKQEPIWSTENRY-----SGMPG--L---P---HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR--- 105 (360)
T ss_pred hHhcCCchhhHHHHh-----ccCCC--C---C---cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc---
Confidence 367888777665554 22211 1 1 5999999999999999999999987411 11112222100
Q ss_pred CCCccccCCCccccccccccchhhhHHHHHHH-------hCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 770 QPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR-------SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 770 ~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~-------~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
|.+.- + ... .+....+ ...+..|+|||.|. +....|++|.+.++.- +
T Consensus 106 ------------gid~v-r--~qi-~~fast~~~~~fst~~~fKlvILDEADa-MT~~AQnALRRviek~--t------- 159 (360)
T KOG0990|consen 106 ------------GIDPV-R--QQI-HLFASTQQPTTYSTHAAFKLVILDEADA-MTRDAQNALRRVIEKY--T------- 159 (360)
T ss_pred ------------CCcch-H--HHH-HHHHhhccceeccccCceeEEEecchhH-hhHHHHHHHHHHHHHh--c-------
Confidence 00000 0 000 0111111 12567899999999 9999999999977642 2
Q ss_pred ecCCcEEEEecCC
Q 001355 843 SISGMIFVATSTI 855 (1093)
Q Consensus 843 ~l~naI~IlTSN~ 855 (1093)
.|..|++-+|.
T Consensus 160 --~n~rF~ii~n~ 170 (360)
T KOG0990|consen 160 --ANTRFATISNP 170 (360)
T ss_pred --cceEEEEeccC
Confidence 35557777775
No 263
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.88 E-value=0.041 Score=58.87 Aligned_cols=92 Identities=14% Similarity=0.209 Sum_probs=51.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHH-------
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEF------- 800 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal------- 800 (1093)
..++.|++|+|||++.+.+.+.+......++.+..+..... .+. ...| ....+....+....
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~----~L~---~~~~----~~a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAK----ELR---EKTG----IEAQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHH----HHH---HHHT----S-EEEHHHHTTEECCEECCSS
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHH----HHH---HhhC----cchhhHHHHHhcCCccccccc
Confidence 68889999999999999999888666555555544321000 000 0000 00000000000000
Q ss_pred -HhCCceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 801 -RSKPYSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 801 -~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
...+..||++||+.. ++......|++++..
T Consensus 89 ~~~~~~~vliVDEasm-v~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 89 PELPKKDVLIVDEASM-VDSRQLARLLRLAKK 119 (196)
T ss_dssp CC-TSTSEEEESSGGG--BHHHHHHHHHHS-T
T ss_pred ccCCcccEEEEecccc-cCHHHHHHHHHHHHh
Confidence 023456999999999 999999999988875
No 264
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.03 Score=57.73 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
+-++++|+||+|||+++.-|++.+-.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 56999999999999999999988743
No 265
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.00094 Score=84.54 Aligned_cols=128 Identities=28% Similarity=0.323 Sum_probs=96.9
Q ss_pred ccccCCCCcccccccccCCccCCchhhhhc-cccChHHHhhccccccccCCCChHHHHHHHHHHHHHHHHHhcCCCceee
Q 001355 941 RSYLDLNLPADEAEEDTSSEKFDSDTICEN-SGAWLEDFFDQTDAIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLE 1019 (1093)
Q Consensus 941 ~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~-~~~~~~efl~rId~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~ 1019 (1093)
..++|||+|++.++..+..+...++..+.. ...|..++.++++..|.|+|+||+..++-|...|.+.|...++..+.++
T Consensus 762 id~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l~e 841 (898)
T KOG1051|consen 762 IDELDLNLPLDRDELIEIVNKQLTEIEKRLEERELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALLGE 841 (898)
T ss_pred cceeeeecccchhhHhhhhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhheee
Confidence 367899999985544333333333332222 2239999999999999999999999999999999999999998888899
Q ss_pred cCHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 001355 1020 IDYEILVQILAAT-WLSDRKKAIENWIENVVLRSFYEVRRKHHFTAGSVVKLV 1071 (1093)
Q Consensus 1020 Id~~vle~Ll~~~-~~~~~~r~ie~wve~vl~~~l~e~~~~~~~~~~~~VkLv 1071 (1093)
|+++..++|+.+. |.. ++..+..|++.+..+...+. +|.......|+++
T Consensus 842 i~~~~~~~i~~~~~~~~-~~e~~~~~l~~~~~~~~~~~--~~~~~~~~~i~~~ 891 (898)
T KOG1051|consen 842 VEDGLTERILVADGWSQ-GKEVFQPQLETVKKKVFLEI--KVSKTTSLGIKLV 891 (898)
T ss_pred ecCCceEEEEecccccc-chhhhcchhheecccccccc--ccccccccccccc
Confidence 9999999999885 776 66677777777777776444 5555555666666
No 266
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.85 E-value=0.013 Score=65.52 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=46.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH--hccCCCceEEeecCCccccCC-CCccccCCCccccc-----cccccchhhhHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI--VFGNKGKLIHVDVSSEQRVSQ-PNSIFDCQNIDFCD-----CKLRGKVLVDYIYQ 798 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~--lfgs~~~fv~id~s~~~~~~~-~~si~~~~~l~G~~-----~g~~g~~~~~~l~e 798 (1093)
..+.++|+.|+|||.+|+.+++. +-......+.++++....... ...+. ..++.. .........+.+.+
T Consensus 20 ~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~---~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQIL---RQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHH---HHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred EEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccchh
Confidence 47999999999999999999876 433333344566554221100 00000 000110 00001123456667
Q ss_pred HHHhCCceEEEEccccc
Q 001355 799 EFRSKPYSVVFLEDLDK 815 (1093)
Q Consensus 799 al~~~p~~VI~LDEVDk 815 (1093)
.+..+ ..+|+||+|+.
T Consensus 97 ~L~~~-~~LlVlDdv~~ 112 (287)
T PF00931_consen 97 LLKDK-RCLLVLDDVWD 112 (287)
T ss_dssp HHCCT-SEEEEEEEE-S
T ss_pred hhccc-cceeeeeeecc
Confidence 76666 68999999998
No 267
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.83 E-value=0.02 Score=62.44 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=25.1
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 725 RGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 725 ~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
.+.++||+|++|+|||++|+.++. ...++..|.+
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~-----~~~~~~~d~~ 44 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG-----KTLVLSFDMS 44 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC-----CCEEEecccc
Confidence 346899999999999999998852 2334555554
No 268
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.033 Score=68.93 Aligned_cols=104 Identities=24% Similarity=0.298 Sum_probs=69.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
..+|++|++|+|||++.++.|..+ ...++.+||.+.......+ ..+....++...+..+..
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~l---g~h~~evdc~el~~~s~~~----------------~etkl~~~f~~a~~~~pa 492 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASEL---GLHLLEVDCYELVAESASH----------------TETKLQAIFSRARRCSPA 492 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHh---CCceEeccHHHHhhcccch----------------hHHHHHHHHHHHhhcCce
Confidence 579999999999999999999988 6788999998743211111 113345566666667778
Q ss_pred EEEEcccccc-------cCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 807 VVFLEDLDKA-------ADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 807 VI~LDEVDki-------ad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
||||-++|-+ .+..++..+-..+..-.+. -+....|||.|++.
T Consensus 493 vifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~------~~~~~~ivv~t~~s 542 (953)
T KOG0736|consen 493 VLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFK------FSCPPVIVVATTSS 542 (953)
T ss_pred EEEEeccceeeecCCCchhHHHHHHHHHHHhccccc------CCCCceEEEEeccc
Confidence 9999888741 1344555555555422111 23457889999885
No 269
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.81 E-value=0.067 Score=52.02 Aligned_cols=101 Identities=17% Similarity=0.237 Sum_probs=74.9
Q ss_pred EEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEE
Q 001355 234 LLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVN 310 (1093)
Q Consensus 234 vlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~ 310 (1093)
+|+|.+|.| .++.+++.+ +.+++.++ .+.+. ..+.++.+.++..+...++.. ....|||
T Consensus 2 ll~G~~G~GKT~l~~~la~~l-------------~~~~~~i~--~~~~~--~~~~~~~~~~i~~~~~~~~~~-~~~~vl~ 63 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL-------------GFPFIEID--GSELI--SSYAGDSEQKIRDFFKKAKKS-AKPCVLF 63 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT-------------TSEEEEEE--TTHHH--TSSTTHHHHHHHHHHHHHHHT-STSEEEE
T ss_pred EEECcCCCCeeHHHHHHHhhc-------------cccccccc--ccccc--ccccccccccccccccccccc-ccceeee
Confidence 689999998 488888774 46788888 77774 457889999999999888764 3479999
Q ss_pred eCcchhhhcCC--CcchHHHHHHHHHHhhhcCC--CCCcEEEEEec
Q 001355 311 YGELKVLVSDS--VSTEAARFVVSQLTSLLKSG--NGEKLWLIGAA 352 (1093)
Q Consensus 311 igdl~~~v~~~--~~~~~~~~~v~el~~Ll~~~--~~g~lwliG~a 352 (1093)
|||++-+.... .........+..|-+++... .++++.+||++
T Consensus 64 iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~tt 109 (132)
T PF00004_consen 64 IDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATT 109 (132)
T ss_dssp EETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEE
T ss_pred eccchhcccccccccccccccccceeeecccccccccccceeEEee
Confidence 99999999876 23344555555666666421 23579999985
No 270
>PRK10536 hypothetical protein; Provisional
Probab=95.77 E-value=0.052 Score=60.43 Aligned_cols=22 Identities=27% Similarity=0.207 Sum_probs=20.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.+++.||.|||||++|.+++..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 271
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.74 E-value=0.045 Score=61.40 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=59.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC-ccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS-EQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~-~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
.++|.||+|+|||++.+++...+......++.+.-.. +. +.+...+ .. ....+.++.+.+..+++.+| .
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~-------~~~~~q~-~v-~~~~~~~~~~~l~~~lR~~P-D 151 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ-------IPGINQV-QV-NEKAGLTFARGLRAILRQDP-D 151 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec-------CCCceEE-Ee-CCcCCcCHHHHHHHHhccCC-C
Confidence 6999999999999999998777754334455553221 11 0000000 00 01123456677888888777 7
Q ss_pred EEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 807 VVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 807 VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
+|+++||.. ++....++++..+|.
T Consensus 152 ~i~vgEiR~---~e~a~~~~~aa~tGh 175 (264)
T cd01129 152 IIMVGEIRD---AETAEIAVQAALTGH 175 (264)
T ss_pred EEEeccCCC---HHHHHHHHHHHHcCC
Confidence 999999866 566677788888774
No 272
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.70 E-value=0.05 Score=63.27 Aligned_cols=97 Identities=16% Similarity=0.259 Sum_probs=57.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccC-CCceEEeecC-CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGN-KGKLIHVDVS-SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKP 804 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs-~~~fv~id~s-~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p 804 (1093)
..+++.||+|+|||++.++|.+.+... ...++.+.-. ++.. ..... .......|+...++.+.+..+++..|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~-~~~~~-----~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH-RNKRS-----LINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc-cCccc-----eEEccccCCCCcCHHHHHHHhhccCC
Confidence 369999999999999999998876422 2333333211 1100 00000 01111123223356677788888777
Q ss_pred ceEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 805 YSVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 805 ~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
.+|++||+-. ++.....+++..+|.
T Consensus 197 -d~i~vgEird---~~~~~~~l~aa~tGh 221 (343)
T TIGR01420 197 -DVILIGEMRD---LETVELALTAAETGH 221 (343)
T ss_pred -CEEEEeCCCC---HHHHHHHHHHHHcCC
Confidence 6999999853 566666677777663
No 273
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.66 E-value=0.052 Score=71.18 Aligned_cols=115 Identities=13% Similarity=0.083 Sum_probs=82.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
+++++.|+.|+||+.+...|+..+ +..+|.|+++..++ ...+.| .|....+|-.. -..+.+.+++.. +.
T Consensus 150 ~pI~l~g~~gsgksfLisel~~~~---G~~iV~Ihl~e~TD---ak~LiG--tYts~KpG~fE-w~~GvL~~avv~--G~ 218 (4600)
T COG5271 150 VPIYLEGGRGSGKSFLISELCDEG---GQRIVEIHLREITD---AKVLIG--TYTSPKPGDFE-WMKGVLIEAVVS--GD 218 (4600)
T ss_pred cceEEecCccccHHHHHHHHHHHh---CceEEEEecccccC---chheee--eccCCCCCcee-eccchhhhhhhc--Cc
Confidence 469999999999999999999987 46789999987543 111111 11111222100 012567777754 45
Q ss_pred EEEEcccccccCHHHHHHHhhhhcCCeEec-CCCeEeecCCcEEEEec
Q 001355 807 VVFLEDLDKAADPIVQSSLTKAISTGKFTD-SYGRDVSISGMIFVATS 853 (1093)
Q Consensus 807 VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d-~~G~~V~l~naI~IlTS 853 (1093)
-|+|.+||| ++..+...|+.+|+..++.. ++|.+|...+.+=|+.|
T Consensus 219 WILf~~Idk-ap~~vLs~Ll~llekR~L~ipsrGEtV~A~~~Fqif~T 265 (4600)
T COG5271 219 WILFKRIDK-APHGVLSYLLTLLEKRRLLIPSRGETVLAHDNFQIFFT 265 (4600)
T ss_pred EEEEeeccc-CchhHHHHHHHHHHhhhhccCCCCceEEecCCEEEEEe
Confidence 899999999 99999999999999998887 77988877776544444
No 274
>PRK04296 thymidine kinase; Provisional
Probab=95.63 E-value=0.063 Score=57.14 Aligned_cols=98 Identities=9% Similarity=-0.051 Sum_probs=50.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHH--HhCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEF--RSKP 804 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal--~~~p 804 (1093)
...+++||+|+|||+++..++....+.....+.+.-. .+.......+. ..+|....-......+.+...+ ....
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~-~d~~~~~~~i~---~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA-IDDRYGEGKVV---SRIGLSREAIPVSSDTDIFELIEEEGEK 78 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc-ccccccCCcEe---cCCCCcccceEeCChHHHHHHHHhhCCC
Confidence 3578999999999999988877665655555555321 01000011111 0111100000001112233332 2345
Q ss_pred ceEEEEcccccccCHHHHHHHhhhh
Q 001355 805 YSVVFLEDLDKAADPIVQSSLTKAI 829 (1093)
Q Consensus 805 ~~VI~LDEVDkiad~~vq~~Ll~aL 829 (1093)
..||+|||+.. ++.+-...|.+.+
T Consensus 79 ~dvviIDEaq~-l~~~~v~~l~~~l 102 (190)
T PRK04296 79 IDCVLIDEAQF-LDKEQVVQLAEVL 102 (190)
T ss_pred CCEEEEEcccc-CCHHHHHHHHHHH
Confidence 57999999998 8765333354553
No 275
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=95.53 E-value=0.036 Score=66.54 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=92.1
Q ss_pred HHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 683 YKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 683 lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
|..|.+.|.-.|.|++.+..+|.-.+.-.--..- ++|.+-++|+.+|+.|.|.|.|+.|-|.+-..- ++ .|.-
T Consensus 292 FdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L-~NGshlRGDINiLlvGDPSvAKSQLLRyVLntA-----pl-AI~T 364 (818)
T KOG0479|consen 292 FDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNL-ENGSHLRGDINILLVGDPSVAKSQLLRYVLNTA-----PL-AIAT 364 (818)
T ss_pred HHHHhhccCcccccHHHHHHHHHHHHhccceecc-CCCceeccceeEEEecCchHHHHHHHHHHHhcc-----cc-cccc
Confidence 3445556677899999999888766654322111 233344688999999999999999988654321 10 1110
Q ss_pred CCccccCCCCccccCCCccccccccccchhhhHH-HHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCC-Ce
Q 001355 763 SSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYI-YQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY-GR 840 (1093)
Q Consensus 763 s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l-~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~-G~ 840 (1093)
... .+|-.|-+.-+-.+.. .|. .+| ++++--...+||.|||+|| |+.--.-++-+.||.|+++..+ |-
T Consensus 365 TGR-----GSSGVGLTAAVTtD~e-TGE---RRLEAGAMVLADRGVVCIDEFDK-MsDiDRvAIHEVMEQqtVTIaKAGI 434 (818)
T KOG0479|consen 365 TGR-----GSSGVGLTAAVTTDQE-TGE---RRLEAGAMVLADRGVVCIDEFDK-MSDIDRVAIHEVMEQQTVTIAKAGI 434 (818)
T ss_pred cCC-----CCCCccceeEEeeccc-cch---hhhhcCceEEccCceEEehhccc-ccchhHHHHHHHHhcceEEeEeccc
Confidence 000 0000000000000000 111 111 1222234567999999999 9988899999999999999765 42
Q ss_pred Eeec-CCcEEEEecCCCCC
Q 001355 841 DVSI-SGMIFVATSTILKG 858 (1093)
Q Consensus 841 ~V~l-~naI~IlTSN~~~~ 858 (1093)
-..+ .++=+|++.|...|
T Consensus 435 HasLNARCSVlAAANPvyG 453 (818)
T KOG0479|consen 435 HASLNARCSVLAAANPVYG 453 (818)
T ss_pred hhhhccceeeeeecCcccc
Confidence 2222 13447788886544
No 276
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.47 E-value=0.015 Score=56.39 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=25.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.+++.|++|+|||++|+.||+.+ .+..+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~-----~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL-----GFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-----TCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-----CCeEEEecc
Confidence 37899999999999999999987 245555554
No 277
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.43 E-value=0.013 Score=60.61 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=38.5
Q ss_pred cCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc
Q 001355 694 VGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE 765 (1093)
Q Consensus 694 ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~ 765 (1093)
.+|.++.++.+...+. ... . ...-.++++|++|+|||.+.+++...+-.....++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~-~--------~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ-S--------GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS-S-------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHH-c--------CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788988888888875 211 1 111369999999999999999888777544333677776653
No 278
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.41 E-value=0.055 Score=58.15 Aligned_cols=97 Identities=20% Similarity=0.288 Sum_probs=63.4
Q ss_pred CCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHh
Q 001355 723 SKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS 802 (1093)
Q Consensus 723 ~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~ 802 (1093)
.+.+..++|.|+-|+|||+..+.|....|... ... . ..++....+.+.
T Consensus 49 ~k~d~~lvl~G~QG~GKStf~~~L~~~~~~d~-------~~~------------------~----~~kd~~~~l~~~--- 96 (198)
T PF05272_consen 49 CKNDTVLVLVGKQGIGKSTFFRKLGPEYFSDS-------IND------------------F----DDKDFLEQLQGK--- 96 (198)
T ss_pred CcCceeeeEecCCcccHHHHHHHHhHHhccCc-------ccc------------------C----CCcHHHHHHHHh---
Confidence 46778999999999999999999865533211 000 0 011222233332
Q ss_pred CCceEEEEcccccccCHHHHHHHhhhhcCCeE--ecCCCe--EeecCCcEEEEecCC
Q 001355 803 KPYSVVFLEDLDKAADPIVQSSLTKAISTGKF--TDSYGR--DVSISGMIFVATSTI 855 (1093)
Q Consensus 803 ~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~--~d~~G~--~V~l~naI~IlTSN~ 855 (1093)
-+|.|||++. +...-++.|+..|-.-.. +...|+ +--.+.++||.|||-
T Consensus 97 ---~iveldEl~~-~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~ 149 (198)
T PF05272_consen 97 ---WIVELDELDG-LSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTND 149 (198)
T ss_pred ---HheeHHHHhh-cchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCC
Confidence 3999999999 888888888888865433 333332 233456899999995
No 279
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=95.37 E-value=0.0074 Score=50.16 Aligned_cols=38 Identities=29% Similarity=0.531 Sum_probs=34.2
Q ss_pred eehhHHHHHHHhcCc--hhhhhhcccCCCcHHHHHhhccC
Q 001355 133 KVDLKYFVLAILDDP--MASRVFGEAGFLSRDIKLAIIQP 170 (1093)
Q Consensus 133 kv~~e~lilsilddp--~vsrv~~eagf~s~~vk~~i~~~ 170 (1093)
+|+.+||++++|++| .+.++|+++|++...++..|++.
T Consensus 12 ~i~~eHlL~all~~~~~~~~~il~~~~id~~~l~~~i~~~ 51 (53)
T PF02861_consen 12 YISPEHLLLALLEDPDSIAARILKKLGIDPEQLKAAIEKA 51 (53)
T ss_dssp SE-HHHHHHHHHHHTTSHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 799999999999877 89999999999999999998864
No 280
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.33 E-value=0.026 Score=57.36 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=28.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE 765 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~ 765 (1093)
.+|++|.||+|||++|..||+.. .|.+|+++.+
T Consensus 9 NILvtGTPG~GKstl~~~lae~~-----~~~~i~isd~ 41 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKT-----GLEYIEISDL 41 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHh-----CCceEehhhH
Confidence 49999999999999999999876 4677888864
No 281
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.32 E-value=0.042 Score=61.38 Aligned_cols=94 Identities=20% Similarity=0.359 Sum_probs=57.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC-ccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS-EQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~-~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
..++|.|++|+|||++.++|...+......++.+.-.. +. ....+.+ .+. .. -.+.++.+.+..+++.+|
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~-l~~~~~~----~~~-~~--~~~~~~~~~l~~~LR~~p- 198 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR-LPGPNQI----QIQ-TR--RDEISYEDLLKSALRQDP- 198 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S---SCSSEE----EEE-EE--TTTBSHHHHHHHHTTS---
T ss_pred eEEEEECCCccccchHHHHHhhhccccccceEEecccccee-ecccceE----EEE-ee--cCcccHHHHHHHHhcCCC-
Confidence 36999999999999999999988755535555554221 11 0000000 000 00 012355677888888887
Q ss_pred eEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 806 SVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 806 ~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
.+|++.||-. .+.... ++++.+|.
T Consensus 199 D~iiigEiR~---~e~~~~-~~a~~tGh 222 (270)
T PF00437_consen 199 DVIIIGEIRD---PEAAEA-IQAANTGH 222 (270)
T ss_dssp SEEEESCE-S---CHHHHH-HHHHHTT-
T ss_pred CcccccccCC---HhHHHH-HHhhccCC
Confidence 6999999877 356666 88998875
No 282
>PHA02774 E1; Provisional
Probab=95.29 E-value=0.059 Score=65.81 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=54.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
.++|+||+|+|||++|.+|.+.+.|.--.| +|... . |. ++.+.+ -.|
T Consensus 436 civ~~GPP~TGKS~fa~sL~~~L~G~vi~f--vN~~s--~-------------------Fw----Lqpl~d------~ki 482 (613)
T PHA02774 436 CLVIYGPPDTGKSMFCMSLIKFLKGKVISF--VNSKS--H-------------------FW----LQPLAD------AKI 482 (613)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEE--EECcc--c-------------------cc----cchhcc------CCE
Confidence 699999999999999999999985432222 34221 0 10 112221 249
Q ss_pred EEEcccccccCHHHHHHHhhhhcCCeEe--cCCCeEeecCCcEEEEecCC
Q 001355 808 VFLEDLDKAADPIVQSSLTKAISTGKFT--DSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 808 I~LDEVDkiad~~vq~~Ll~aLe~Gr~~--d~~G~~V~l~naI~IlTSN~ 855 (1093)
++|||+-.-+-.-+...|..+|+...+. .-+-..+.+...-+|+|||.
T Consensus 483 ~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~ 532 (613)
T PHA02774 483 ALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNI 532 (613)
T ss_pred EEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCC
Confidence 9999994402223344566666633221 11122344445568899996
No 283
>PHA00729 NTP-binding motif containing protein
Probab=95.25 E-value=0.039 Score=60.29 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=22.2
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
.++++|++|||||++|.+|++.+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999999873
No 284
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.14 E-value=0.099 Score=58.92 Aligned_cols=84 Identities=11% Similarity=0.072 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcccCc-----cHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCC
Q 001355 681 RDYKTLRIALAEKVGW-----QDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKG 755 (1093)
Q Consensus 681 e~lk~L~~~L~e~ViG-----Qdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~ 755 (1093)
+-.+.+.+.+.+++.+ .+.....+.+.+.........+-....+....++|+||+|+|||+++..||..+-..+.
T Consensus 22 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~ 101 (272)
T TIGR00064 22 EVVEKIIEALKKELKGKKVKDAELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQGK 101 (272)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 3344555555444332 34455556666655443221110011122357888899999999999999987755545
Q ss_pred ceEEeecCC
Q 001355 756 KLIHVDVSS 764 (1093)
Q Consensus 756 ~fv~id~s~ 764 (1093)
...-+++..
T Consensus 102 ~V~li~~D~ 110 (272)
T TIGR00064 102 SVLLAAGDT 110 (272)
T ss_pred EEEEEeCCC
Confidence 555566654
No 285
>PRK10867 signal recognition particle protein; Provisional
Probab=95.09 E-value=0.23 Score=59.54 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=30.7
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccC-CCceEEeecCCc
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGN-KGKLIHVDVSSE 765 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs-~~~fv~id~s~~ 765 (1093)
+.+++|+|++|+|||+++.-||..+... ......+++..|
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 4689999999999999999888876544 455556666643
No 286
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.08 E-value=0.54 Score=53.65 Aligned_cols=39 Identities=26% Similarity=0.437 Sum_probs=31.8
Q ss_pred eEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecC
Q 001355 806 SVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATST 854 (1093)
Q Consensus 806 ~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN 854 (1093)
-||+|||+|+ ++++-...+++++.. -.++.+++||+..+
T Consensus 174 iViiIDdLDR-~~~~~i~~~l~~ik~---------~~~~~~i~~Il~~D 212 (325)
T PF07693_consen 174 IVIIIDDLDR-CSPEEIVELLEAIKL---------LLDFPNIIFILAFD 212 (325)
T ss_pred EEEEEcchhc-CCcHHHHHHHHHHHH---------hcCCCCeEEEEEec
Confidence 4899999999 999988888888863 23457899999876
No 287
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.06 E-value=0.12 Score=68.17 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=77.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCcccc----ccccccchh-hhHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFC----DCKLRGKVL-VDYIYQEFR 801 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~----~~g~~g~~~-~~~l~eal~ 801 (1093)
.++|+.||+.+|||.|...||+.. ...||+||-...++. +.|+|. +.|.. .+ -+.+.+|+|
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHTdl---------qeYiGTyvTdd~G~l--sFkEGvLVeAlR 954 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARET---GHKFVRINNHEHTDL---------QEYIGTYVTDDDGSL--SFKEGVLVEALR 954 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHh---CccEEEecCcccchH---------HHHhhceeecCCCce--eeehhHHHHHHh
Confidence 579999999999999999999988 668999996653221 234443 22200 11 267889998
Q ss_pred hCCceEEEEcccccccCHHHHHHHhhhhcCCe-EecCCCe--EeecCCcEEEEecC
Q 001355 802 SKPYSVVFLEDLDKAADPIVQSSLTKAISTGK-FTDSYGR--DVSISGMIFVATST 854 (1093)
Q Consensus 802 ~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr-~~d~~G~--~V~l~naI~IlTSN 854 (1093)
+. --|+|||..- |..++..+|-+++++.| +..+.-. .+.-.+-.+.+|-|
T Consensus 955 ~G--yWIVLDELNL-ApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQN 1007 (4600)
T COG5271 955 RG--YWIVLDELNL-APTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQN 1007 (4600)
T ss_pred cC--cEEEeecccc-CcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecC
Confidence 64 4789999999 99999999999998653 3222222 23334555666666
No 288
>PRK14974 cell division protein FtsY; Provisional
Probab=95.00 E-value=0.22 Score=57.79 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=53.6
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCcccc--ccccccchhhhHHHHHH---
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFC--DCKLRGKVLVDYIYQEF--- 800 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~--~~g~~g~~~~~~l~eal--- 800 (1093)
+..++|.|++|+|||+++..||..+-.....++.+++..+..... ..+.......|. ..++.|.+....+..++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~-eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAI-EQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHH-HHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 458999999999999999999887654444444455543211000 000000000111 01111212112222322
Q ss_pred HhCCceEEEEccccccc--CHHHHHHHhhhhc
Q 001355 801 RSKPYSVVFLEDLDKAA--DPIVQSSLTKAIS 830 (1093)
Q Consensus 801 ~~~p~~VI~LDEVDkia--d~~vq~~Ll~aLe 830 (1093)
....+.+|+||.... + +......|..+.+
T Consensus 219 ~~~~~DvVLIDTaGr-~~~~~~lm~eL~~i~~ 249 (336)
T PRK14974 219 KARGIDVVLIDTAGR-MHTDANLMDELKKIVR 249 (336)
T ss_pred HhCCCCEEEEECCCc-cCCcHHHHHHHHHHHH
Confidence 234456999999998 7 4556666655543
No 289
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.98 E-value=0.021 Score=59.65 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEeeCCCCChHHHHHHHHHHHh
Q 001355 729 LAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
++++|++|+|||++.+.+.+.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7999999999999999888877
No 290
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=94.87 E-value=0.15 Score=56.18 Aligned_cols=107 Identities=7% Similarity=0.030 Sum_probs=68.3
Q ss_pred EEEeeCCCC-ChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhC---
Q 001355 728 WLAFLGPDK-VGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSK--- 803 (1093)
Q Consensus 728 ~LLf~Gp~G-vGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~--- 803 (1093)
..||.|..+ +||..++.-++..++... +++....+.. +..+.+--+......+.+.++.+.+.+...
T Consensus 17 AYLfeG~n~~~~~~~~~~f~~~~l~~~~-----i~~~~HPD~~----~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~ 87 (263)
T PRK06581 17 SWLIEAENIEQALKDLEKFIYIKLFKNS-----IPLENNPDYH----FIARETSATSNAKNISIEQIRKLQDFLSKTSAI 87 (263)
T ss_pred eeeEeCCChhhHHHHHHHHHHHHHhccC-----cccCCCCCEE----EEeccccccccCCcccHHHHHHHHHHHhhCccc
Confidence 489999998 999999999999887642 2333211110 011000000001123334455565655544
Q ss_pred -CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 804 -PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 804 -p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
++.|++|+++|+ ++....|+||+.||+- -.+++||++|+.
T Consensus 88 g~~KViII~~ae~-mt~~AANALLKtLEEP-----------P~~t~fILit~~ 128 (263)
T PRK06581 88 SGYKVAIIYSAEL-MNLNAANSCLKILEDA-----------PKNSYIFLITSR 128 (263)
T ss_pred CCcEEEEEechHH-hCHHHHHHHHHhhcCC-----------CCCeEEEEEeCC
Confidence 456999999999 9999999999999973 246778887663
No 291
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.87 E-value=0.11 Score=54.90 Aligned_cols=95 Identities=17% Similarity=0.245 Sum_probs=54.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC-CccccCCCCccccCCCccc---cccccccchhhhHHHHHHHhC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS-SEQRVSQPNSIFDCQNIDF---CDCKLRGKVLVDYIYQEFRSK 803 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s-~~~~~~~~~si~~~~~l~G---~~~g~~g~~~~~~l~eal~~~ 803 (1093)
.++|.||+|+|||++.++|...+.. ....+.+.-. .... ...+.+ .+.- ...++...++.+.+...++.+
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~-~~~~i~ied~~E~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~lR~~ 100 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPP-DERIITIEDTAELQL-PHPNWV----RLVTRPGNVEGSGEVTMADLLRSALRMR 100 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCC-CCCEEEECCccccCC-CCCCEE----EEEEecCCCCCCCccCHHHHHHHHhccC
Confidence 6999999999999999999987743 3334444211 1100 000000 0000 001122234556666777777
Q ss_pred CceEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 804 PYSVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 804 p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
| .+|++.||-. ++.. .++++..+|.
T Consensus 101 p-d~i~igEir~---~ea~-~~~~a~~tGh 125 (186)
T cd01130 101 P-DRIIVGEVRG---GEAL-DLLQAMNTGH 125 (186)
T ss_pred C-CEEEEEccCc---HHHH-HHHHHHhcCC
Confidence 6 7888999876 4554 4667777764
No 292
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.82 E-value=0.088 Score=57.22 Aligned_cols=92 Identities=20% Similarity=0.246 Sum_probs=56.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCC-----CceEEeecCCccccCCCCccccCCCcccccccccc--------chhhh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNK-----GKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRG--------KVLVD 794 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~-----~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g--------~~~~~ 794 (1093)
..|+.||||+|||++-|-||+.+--.. .....+|-+.. +.+ .+.|.+.--+| ....+
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE--------Iag--~~~gvpq~~~g~R~dVld~cpk~~ 208 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE--------IAG--CLNGVPQHGRGRRMDVLDPCPKAE 208 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccch--------hhc--cccCCchhhhhhhhhhcccchHHH
Confidence 469999999999999999999874332 23344553321 111 11111110011 11124
Q ss_pred HHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCC
Q 001355 795 YIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTG 832 (1093)
Q Consensus 795 ~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~G 832 (1093)
-+..+++..-..||++|||.. .+--.+++.+++.|
T Consensus 209 gmmmaIrsm~PEViIvDEIGt---~~d~~A~~ta~~~G 243 (308)
T COG3854 209 GMMMAIRSMSPEVIIVDEIGT---EEDALAILTALHAG 243 (308)
T ss_pred HHHHHHHhcCCcEEEEecccc---HHHHHHHHHHHhcC
Confidence 456778887778999999987 34456778888866
No 293
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=94.78 E-value=0.084 Score=71.56 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=67.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccc-cccccccch--hhhHHHHHHHhCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDF-CDCKLRGKV--LVDYIYQEFRSKP 804 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G-~~~g~~g~~--~~~~l~eal~~~p 804 (1093)
++||.||+++|||.|++.+|+.. ..++++++.-...+ ...|+| |...--|.. ..+.+.+++++
T Consensus 442 pillqG~tssGKtsii~~la~~~---g~~~vrinnhehtd---------~qeyig~y~~~~~g~l~freg~LV~Alr~-- 507 (1856)
T KOG1808|consen 442 PILLQGPTSSGKTSIIKELARAT---GKNIVRINNHEHTD---------LQEYIGTYVADDNGDLVFREGVLVQALRN-- 507 (1856)
T ss_pred CeEEecCcCcCchhHHHHHHHHh---ccCceehhccccch---------HHHHHHhhhcCCCCCeeeehhHHHHHHHh--
Confidence 69999999999999999999988 66778877554211 134444 211111111 12556777765
Q ss_pred ceEEEEcccccccCHHHHHHHhhhhcC-CeEecCCC
Q 001355 805 YSVVFLEDLDKAADPIVQSSLTKAIST-GKFTDSYG 839 (1093)
Q Consensus 805 ~~VI~LDEVDkiad~~vq~~Ll~aLe~-Gr~~d~~G 839 (1093)
+..+||||+.- ++.++...|.++++. ..+....+
T Consensus 508 G~~~vlD~lnl-a~~dvL~aLnrllddnRel~ipe~ 542 (1856)
T KOG1808|consen 508 GDWIVLDELNL-APHDVLEALNRLLDDNRELFIPET 542 (1856)
T ss_pred CCEEEeccccc-cchHHHHHHHhhhhhhcccccccc
Confidence 45999999999 999999999999987 44444443
No 294
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.77 E-value=0.1 Score=54.44 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=27.2
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
+++.||+|+|||.++..++......+.+.+++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 68999999999999998877655555666666554
No 295
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.74 E-value=0.14 Score=61.22 Aligned_cols=85 Identities=12% Similarity=0.056 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcccCccH---------HHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 681 RDYKTLRIALAEKVGWQD---------EAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 681 e~lk~L~~~L~e~ViGQd---------eai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
+-.+.+.+.+.+++.|++ .++..+.+.+....-+...+-.+.......++|+|++|+|||+++..||..+-
T Consensus 46 ~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~l~~~~~~~~~~~~~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 46 KLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNLVDPGVEAFTPKKGKQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred HHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhCCCCccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344566666666655554 23444444444322111111111112346899999999999999999998765
Q ss_pred cCCCceEEeecCCc
Q 001355 752 GNKGKLIHVDVSSE 765 (1093)
Q Consensus 752 gs~~~fv~id~s~~ 765 (1093)
..+....-+++..|
T Consensus 126 ~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 126 RKGFKPCLVCADTF 139 (429)
T ss_pred HCCCCEEEEcCccc
Confidence 44445555666543
No 296
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.72 E-value=0.085 Score=61.81 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=57.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCC-CCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQ-PNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~-~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
-+.++|+.|+|||+|.-.....+-...+.-+++. . ++. .|.-. ..+.| +..-+..+...+.+. ..
T Consensus 64 GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--~---Fm~~vh~~l--~~~~~------~~~~l~~va~~l~~~-~~ 129 (362)
T PF03969_consen 64 GLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--E---FMLDVHSRL--HQLRG------QDDPLPQVADELAKE-SR 129 (362)
T ss_pred eEEEECCCCCchhHHHHHHHHhCCcccccccccc--H---HHHHHHHHH--HHHhC------CCccHHHHHHHHHhc-CC
Confidence 4999999999999999988888754333222221 1 100 00000 00111 112234444454432 35
Q ss_pred EEEEccccc--ccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCCC
Q 001355 807 VVFLEDLDK--AADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILK 857 (1093)
Q Consensus 807 VI~LDEVDk--iad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~~ 857 (1093)
||+|||++= |+|.-+...|++.+=. .++++|+|||..+
T Consensus 130 lLcfDEF~V~DiaDAmil~rLf~~l~~-------------~gvvlVaTSN~~P 169 (362)
T PF03969_consen 130 LLCFDEFQVTDIADAMILKRLFEALFK-------------RGVVLVATSNRPP 169 (362)
T ss_pred EEEEeeeeccchhHHHHHHHHHHHHHH-------------CCCEEEecCCCCh
Confidence 999999974 3444455555544421 3577999999854
No 297
>PRK06696 uridine kinase; Validated
Probab=94.71 E-value=0.068 Score=58.20 Aligned_cols=57 Identities=19% Similarity=0.276 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 698 DEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 698 deai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.+.+..|+..|..... .....|.+.|++|+|||++|+.|++.+-....+.+.+.+..
T Consensus 4 ~~~~~~la~~~~~~~~----------~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Dd 60 (223)
T PRK06696 4 KQLIKELAEHILTLNL----------TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDD 60 (223)
T ss_pred HHHHHHHHHHHHHhCC----------CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccc
Confidence 4556777777765321 12357999999999999999999998854334556655554
No 298
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.69 E-value=0.33 Score=57.27 Aligned_cols=100 Identities=11% Similarity=0.131 Sum_probs=55.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHH----h
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR----S 802 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~----~ 802 (1093)
..++|.||+|+|||+++..||..+......+..+++..+.-. ....+.......|.+. +...+ -..+..++. .
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~Ria-AvEQLk~yae~lgipv-~v~~d-~~~L~~aL~~lk~~ 318 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIG-TVQQLQDYVKTIGFEV-IAVRD-EAAMTRALTYFKEE 318 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchH-HHHHHHHHhhhcCCcE-EecCC-HHHHHHHHHHHHhc
Confidence 469999999999999999999888766556556666543200 0000000001111110 00111 122333332 2
Q ss_pred CCceEEEEcccccccC--HHHHHHHhhhhc
Q 001355 803 KPYSVVFLEDLDKAAD--PIVQSSLTKAIS 830 (1093)
Q Consensus 803 ~p~~VI~LDEVDkiad--~~vq~~Ll~aLe 830 (1093)
..+.+||||-... .+ ......|.++++
T Consensus 319 ~~~DvVLIDTaGR-s~kd~~lm~EL~~~lk 347 (436)
T PRK11889 319 ARVDYILIDTAGK-NYRASETVEEMIETMG 347 (436)
T ss_pred cCCCEEEEeCccc-cCcCHHHHHHHHHHHh
Confidence 3467999999987 65 445556666665
No 299
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.67 E-value=0.13 Score=60.40 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=58.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccC--CCceEEeecC-CccccCCCCcccc-CCCccccccccccchhhhHHHHHHHhC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGN--KGKLIHVDVS-SEQRVSQPNSIFD-CQNIDFCDCKLRGKVLVDYIYQEFRSK 803 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs--~~~fv~id~s-~~~~~~~~~si~~-~~~l~G~~~g~~g~~~~~~l~eal~~~ 803 (1093)
.++++||+|+|||++.++|.+.+... ....+.+.=. ++.- ...+.+.. .+.-+|.+. .++...+..+++..
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~-~~~~~~~~~~q~evg~~~----~~~~~~l~~aLR~~ 225 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL-GSPDDLLPPAQSQIGRDV----DSFANGIRLALRRA 225 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc-CCCceeecccccccCCCc----cCHHHHHHHhhccC
Confidence 58999999999999999998877421 2344444311 1110 00011100 011112111 14456677888887
Q ss_pred CceEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 804 PYSVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 804 p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
| .+|++.|+-. .+....++++.++|.
T Consensus 226 P-D~I~vGEiRd---~et~~~al~aa~TGH 251 (372)
T TIGR02525 226 P-KIIGVGEIRD---LETFQAAVLAGQSGH 251 (372)
T ss_pred C-CEEeeCCCCC---HHHHHHHHHHHhcCC
Confidence 7 6999999876 567777788999884
No 300
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.49 E-value=0.29 Score=56.49 Aligned_cols=92 Identities=14% Similarity=0.228 Sum_probs=55.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhc--cCCCceEEeecC-CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVF--GNKGKLIHVDVS-SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKP 804 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lf--gs~~~fv~id~s-~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p 804 (1093)
++++.|++|+|||+++++|...+. .....++.+.=. ++.- .. ...+....+ ...++.+.+..+++.+|
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~-~~-------~~~v~~~~~-~~~~~~~ll~~aLR~~P 220 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQC-AA-------ENYVQYHTS-IDVNMTALLKTTLRMRP 220 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcccc-CC-------CCEEEEecC-CCCCHHHHHHHHhcCCC
Confidence 699999999999999999998752 233444443322 1110 00 011111000 11245567778888777
Q ss_pred ceEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 805 YSVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 805 ~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
..|++.||-. .+.. .+++++.+|.
T Consensus 221 -D~IivGEiR~---~Ea~-~~l~A~~tGh 244 (319)
T PRK13894 221 -DRILVGEVRG---PEAL-DLLMAWNTGH 244 (319)
T ss_pred -CEEEEeccCC---HHHH-HHHHHHHcCC
Confidence 5788999877 3444 4688998874
No 301
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.44 E-value=0.044 Score=56.27 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=22.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|+|++|+|||++|+.||+.+
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999988
No 302
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.42 E-value=0.41 Score=57.01 Aligned_cols=120 Identities=9% Similarity=0.002 Sum_probs=60.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh-ccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV-FGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l-fgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
..++|.||+|+|||+++..||... .........+++..+..... ..+.......|. .+........+.+.+....+
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~-eQLk~yAe~lgv--p~~~~~~~~~l~~~l~~~~~ 300 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAI-EQLKRYADTMGM--PFYPVKDIKKFKETLARDGS 300 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHH-HHHHHHHHhcCC--CeeehHHHHHHHHHHHhCCC
Confidence 478999999999999999998644 33334444455544321100 000000001111 01111112345555655667
Q ss_pred eEEEEcccccc-cCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCC
Q 001355 806 SVVFLEDLDKA-ADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTIL 856 (1093)
Q Consensus 806 ~VI~LDEVDki-ad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~ 856 (1093)
.+||||=.... -+......|..+++.-... .-...++|+.++.+
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~-------~~~e~~LVLsAt~~ 345 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEK-------DSVENLLVLSSTSS 345 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhcCC-------CCCeEEEEEeCCCC
Confidence 89999954430 3345555555555421100 11245677877753
No 303
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.31 E-value=0.33 Score=57.42 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=58.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc------cCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF------GNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEF 800 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf------gs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal 800 (1093)
..++|.||+|+|||+++.-||..+. |..--++.+|+-....... +.......|.+.. ....+ +.+..++
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~-~~~~~-~~l~~~L 249 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVK-AIESF-KDLKEEI 249 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceE-eeCcH-HHHHHHH
Confidence 5799999999999999998887653 1222344455422110000 0000111222111 11111 3334433
Q ss_pred Hh-CCceEEEEcccccccCHHH--HHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 801 RS-KPYSVVFLEDLDKAADPIV--QSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 801 ~~-~p~~VI~LDEVDkiad~~v--q~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.+ ..+.+|+||.+.+ .+... ...|.+.++.... -...++|+.++.
T Consensus 250 ~~~~~~DlVLIDTaGr-~~~~~~~l~el~~~l~~~~~---------~~e~~LVlsat~ 297 (388)
T PRK12723 250 TQSKDFDLVLVDTIGK-SPKDFMKLAEMKELLNACGR---------DAEFHLAVSSTT 297 (388)
T ss_pred HHhCCCCEEEEcCCCC-CccCHHHHHHHHHHHHhcCC---------CCeEEEEEcCCC
Confidence 22 4567999999999 76443 2455555543110 014567777765
No 304
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.29 E-value=0.57 Score=58.05 Aligned_cols=136 Identities=13% Similarity=0.175 Sum_probs=74.1
Q ss_pred HHHHHHHHHH-----hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhcc---
Q 001355 681 RDYKTLRIAL-----AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFG--- 752 (1093)
Q Consensus 681 e~lk~L~~~L-----~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfg--- 752 (1093)
..++.+...| .+.+++.+.-...|-..+.-... .+ + .+..|.+.|-||+|||.+.+.+-+.|..
T Consensus 380 S~l~~ara~Lhls~vp~sLpcRe~E~~~I~~f~~~~i~---~~-~----~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~ 451 (767)
T KOG1514|consen 380 SELSKARARLHLSAVPESLPCRENEFSEIEDFLRSFIS---DQ-G----LGSCMYISGVPGTGKTATVLEVMKELQTSSA 451 (767)
T ss_pred hHHHHHHHHhHHhhccccccchhHHHHHHHHHHHhhcC---CC-C----CceeEEEecCCCCCceehHHHHHHHHHHHHh
Confidence 3444444444 57788888777777776665433 11 1 2247999999999999998877765542
Q ss_pred --CCCc--eEEeecCCccccCCCCccccC--CCccccccccccchhhhHHHHHHH----hCCceEEEEcccccccCHHHH
Q 001355 753 --NKGK--LIHVDVSSEQRVSQPNSIFDC--QNIDFCDCKLRGKVLVDYIYQEFR----SKPYSVVFLEDLDKAADPIVQ 822 (1093)
Q Consensus 753 --s~~~--fv~id~s~~~~~~~~~si~~~--~~l~G~~~g~~g~~~~~~l~eal~----~~p~~VI~LDEVDkiad~~vq 822 (1093)
.-.. |+.||....... +.+.+. ..+.|.... +.-..+.+...+. ..+..||+|||.|. +=..-|
T Consensus 452 ~~e~p~f~yveINgm~l~~~---~~~Y~~I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDElD~-Lvtr~Q 525 (767)
T KOG1514|consen 452 QKELPKFDYVEINGLRLASP---REIYEKIWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDELDI-LVTRSQ 525 (767)
T ss_pred hcCCCCccEEEEcceeecCH---HHHHHHHHHhcccCccc--HHHHHHHHHHhhccCCCCCCCEEEEeccHHH-HhcccH
Confidence 1223 455554332110 000000 122222221 1111222222222 23445999999999 655567
Q ss_pred HHHhhhhc
Q 001355 823 SSLTKAIS 830 (1093)
Q Consensus 823 ~~Ll~aLe 830 (1093)
+.|..+++
T Consensus 526 dVlYn~fd 533 (767)
T KOG1514|consen 526 DVLYNIFD 533 (767)
T ss_pred HHHHHHhc
Confidence 77777776
No 305
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.29 E-value=0.082 Score=61.09 Aligned_cols=52 Identities=21% Similarity=0.163 Sum_probs=45.0
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|-++++..|...+..+..|...++ -.++|.||.|+||+++++.|-+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~k-------rIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERK-------RILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccc-------eEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999988877766542 269999999999999999999887
No 306
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.14 E-value=0.19 Score=61.28 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=59.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC-CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS-SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s-~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
..++++||+|+|||++..++-..+......++.+.=. ++.- . .+. +.-+. . -.|.++...+..+++..|
T Consensus 243 GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~--~--~~~--q~~v~--~-~~g~~f~~~lr~~LR~dP- 312 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI--E--GIG--QIQVN--P-KIGLTFAAGLRAILRQDP- 312 (486)
T ss_pred CEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec--C--CCc--eEEEc--c-ccCccHHHHHHHHHhcCC-
Confidence 3699999999999999987666554333444444211 1110 0 000 00011 1 124467778888898888
Q ss_pred eEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 806 SVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 806 ~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
.||++.||-. .+.....+++..+|.
T Consensus 313 DvI~vGEiRd---~eta~~a~~aa~tGH 337 (486)
T TIGR02533 313 DIIMVGEIRD---LETAQIAIQASLTGH 337 (486)
T ss_pred CEEEEeCCCC---HHHHHHHHHHHHhCC
Confidence 6999999866 667777788888885
No 307
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.13 E-value=0.23 Score=57.60 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=56.7
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec-CCccccCCCCccccCCCcccc--ccccccchhhhHHHHHHHhCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV-SSEQRVSQPNSIFDCQNIDFC--DCKLRGKVLVDYIYQEFRSKP 804 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~-s~~~~~~~~~si~~~~~l~G~--~~g~~g~~~~~~l~eal~~~p 804 (1093)
.++++|++|+|||++.++|...+-. ...++.+.= .++.-....+.+ .++-. ..+-...++.+.+..+++.+|
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip~-~~ri~tiEd~~El~l~~~~n~~----~~~~~~~~~~~~~~~~~~ll~~~LR~~P 236 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPA-IERLITVEDAREIVLSNHPNRV----HLLASKGGQGRAKVTTQDLIEACLRLRP 236 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCCC-CCeEEEecCCCccccccCCCEE----EEEecCCCCCcCcCcHHHHHHHHhccCC
Confidence 5999999999999999999987743 344554421 111000000100 00000 011112245577788888887
Q ss_pred ceEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 805 YSVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 805 ~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
.+|++.|+-- .+.. .+++++.+|.
T Consensus 237 -D~IivGEiR~---~ea~-~~l~a~~tGh 260 (332)
T PRK13900 237 -DRIIVGELRG---AEAF-SFLRAINTGH 260 (332)
T ss_pred -CeEEEEecCC---HHHH-HHHHHHHcCC
Confidence 5788999876 3454 4688898874
No 308
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.09 E-value=0.25 Score=56.99 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=30.4
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+..++|.||+|+|||+++..||..+-........+++..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 457899999999999999999987765555555566554
No 309
>PRK08118 topology modulation protein; Reviewed
Probab=94.04 E-value=0.049 Score=56.82 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=25.4
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
+++.||+|+|||++|+.|++.+ +-+++.+|
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l---~~~~~~lD 33 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKL---NIPVHHLD 33 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCceecc
Confidence 8999999999999999999987 44555555
No 310
>CHL00181 cbbX CbbX; Provisional
Probab=94.04 E-value=0.22 Score=56.59 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=73.9
Q ss_pred CCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcE
Q 001355 231 KNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGV 307 (1093)
Q Consensus 231 ~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gv 307 (1093)
.|-+|.|.||.| ..+.++..+.. .|.++ .-+++.+. ...|++ .+.|+.+.+.+++.. .. .+|
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~--~g~~~----~~~~~~v~--~~~l~~--~~~g~~~~~~~~~l~---~a-~gg- 124 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYK--LGYIK----KGHLLTVT--RDDLVG--QYIGHTAPKTKEVLK---KA-MGG- 124 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--cCCCC----CCceEEec--HHHHHH--HHhccchHHHHHHHH---Hc-cCC-
Confidence 356888999998 36666665433 24333 33466665 334432 234445555544433 32 334
Q ss_pred EEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEEEecccHHHHH-hhhhcCCCCCCCCcc
Q 001355 308 VVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLIGAAMSYETYL-KMLAKFPGLDNDWDL 374 (1093)
Q Consensus 308 il~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwliG~a~T~~tY~-k~~~~~PslE~~w~L 374 (1093)
||||||++.+...+...+-...++..|-.++. ..++.+.+|++ +|..-| ++..-+|+|-++++.
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me-~~~~~~~vI~a--g~~~~~~~~~~~np~L~sR~~~ 189 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVME-NQRDDLVVIFA--GYKDRMDKFYESNPGLSSRIAN 189 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHh-cCCCCEEEEEe--CCcHHHHHHHhcCHHHHHhCCc
Confidence 99999999987543322233556667777775 33467888886 454443 444557888887643
No 311
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.03 E-value=0.48 Score=57.95 Aligned_cols=153 Identities=18% Similarity=0.143 Sum_probs=91.9
Q ss_pred CchhhHHHHHHHhh---ccc-------ccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhh
Q 001355 210 DVDENCRRIGEVLA---GRD-------EKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEIN 276 (1093)
Q Consensus 210 ~rdeeirrv~~vL~---R~~-------~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~ 276 (1093)
|.++.++.+.+.+. .++ -+..++.+|.|.||.| .++.++..+...-.. + .-....++.+. -.
T Consensus 186 Gl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~--~-~~~~~~fl~v~--~~ 260 (512)
T TIGR03689 186 GLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA--E-TGDKSYFLNIK--GP 260 (512)
T ss_pred ChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccc--c-cCCceeEEecc--ch
Confidence 57777777776643 100 1235789999999998 477777765432000 0 11123344444 33
Q ss_pred hhhcCCccHHHHHHHHHHHHHHhhcc--CCCcEEEEeCcchhhhcCCCc---chHHHHHHHHHHhhhcCC-CCCcEEEEE
Q 001355 277 EFVGGRVNVEMMMLKFKEVESAVGRC--SGPGVVVNYGELKVLVSDSVS---TEAARFVVSQLTSLLKSG-NGEKLWLIG 350 (1093)
Q Consensus 277 ~~~a~~~~r~e~e~rlkel~~~v~~~--~~~gvil~igdl~~~v~~~~~---~~~~~~~v~el~~Ll~~~-~~g~lwliG 350 (1093)
.++ .++.+|.+.+++.+-..+... .+.++||||||+..++...+. .+....+++.+-..+... ..+.+-+||
T Consensus 261 eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ 338 (512)
T TIGR03689 261 ELL--NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIG 338 (512)
T ss_pred hhc--ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEe
Confidence 332 357788898888877655432 257899999999999875432 222234444554444321 236789999
Q ss_pred ecccHHHHHhhhhcCCCCCC--CCcce
Q 001355 351 AAMSYETYLKMLAKFPGLDN--DWDLQ 375 (1093)
Q Consensus 351 ~a~T~~tY~k~~~~~PslE~--~w~Lq 375 (1093)
| |.... .-||+|=+ ++|.+
T Consensus 339 A-TN~~d-----~LDpALlRpGRfD~~ 359 (512)
T TIGR03689 339 A-SNRED-----MIDPAILRPGRLDVK 359 (512)
T ss_pred c-cCChh-----hCCHhhcCccccceE
Confidence 7 45543 34899877 77665
No 312
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.02 E-value=0.17 Score=59.43 Aligned_cols=118 Identities=12% Similarity=0.147 Sum_probs=62.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcc-----ccCCCCccccCCCccccccccccch-----hhhHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQ-----RVSQPNSIFDCQNIDFCDCKLRGKV-----LVDYI 796 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~-----~~~~~~si~~~~~l~G~~~g~~g~~-----~~~~l 796 (1093)
..+++.|+.|||||++.++|...+-......+...-.... +....|+.+ +-+.+..... ....+
T Consensus 23 ~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f------~i~~~~~~~~~~~~~~~~~~ 96 (364)
T PF05970_consen 23 LNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFF------GIPINNNEKSQCKISKNSRL 96 (364)
T ss_pred cEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhc------Cccccccccccccccccchh
Confidence 3689999999999999999998775433333322221100 001112222 1111100000 01222
Q ss_pred HHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 797 YQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 797 ~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
...++. -.+|+||||-- .+..+...+-+.|..= .........|+...+|+...+
T Consensus 97 ~~~l~~--~~~lIiDEism-~~~~~l~~i~~~lr~i--~~~~~~~~pFGG~~vil~GDf 150 (364)
T PF05970_consen 97 RERLRK--ADVLIIDEISM-VSADMLDAIDRRLRDI--RKSKDSDKPFGGKQVILFGDF 150 (364)
T ss_pred hhhhhh--heeeecccccc-hhHHHHHHHHHhhhhh--hcccchhhhcCcceEEeehhh
Confidence 333332 24999999999 8888777776655421 111001345666777776665
No 313
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.95 E-value=0.29 Score=58.89 Aligned_cols=95 Identities=15% Similarity=0.158 Sum_probs=61.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC-CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS-SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s-~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
+-+||+||+|+|||+.--++-..++....+++.+.=. +|. +.|... +.-++ -.|-+|...+...++..|
T Consensus 259 GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~-------~~gI~Q-~qVN~-k~gltfa~~LRa~LRqDP- 328 (500)
T COG2804 259 GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQ-------LPGINQ-VQVNP-KIGLTFARALRAILRQDP- 328 (500)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeee-------cCCcce-eeccc-ccCCCHHHHHHHHhccCC-
Confidence 4699999999999998887777776655555443211 110 000000 00111 145577777777787777
Q ss_pred eEEEEcccccccCHHHHHHHhhhhcCCeE
Q 001355 806 SVVFLEDLDKAADPIVQSSLTKAISTGKF 834 (1093)
Q Consensus 806 ~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~ 834 (1093)
.||++.||.. .+.-....++-.+|.+
T Consensus 329 DvImVGEIRD---~ETAeiavqAalTGHL 354 (500)
T COG2804 329 DVIMVGEIRD---LETAEIAVQAALTGHL 354 (500)
T ss_pred CeEEEeccCC---HHHHHHHHHHHhcCCe
Confidence 7999999865 6777888888888864
No 314
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.94 E-value=0.4 Score=57.92 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+|++||+|||||+..+.|+..+
T Consensus 112 iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhh
Confidence 79999999999999999999887
No 315
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.93 E-value=0.14 Score=52.85 Aligned_cols=100 Identities=20% Similarity=0.186 Sum_probs=57.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccc-cchhhhHHHHHHHhCCc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLR-GKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~-g~~~~~~l~eal~~~p~ 805 (1093)
-.+.+.||+|+|||++.+.|+..+...... +.++-........ ... ....+++...+- |....=.+..++-.+|
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~~~~-~~~--~~~~i~~~~qLS~G~~qrl~laral~~~p- 101 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGKEVSFASP-RDA--RRAGIAMVYQLSVGERQMVEIARALARNA- 101 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEECCcCCH-HHH--HhcCeEEEEecCHHHHHHHHHHHHHhcCC-
Confidence 368999999999999999999766433322 3343221100000 000 011122211111 1111123556666666
Q ss_pred eEEEEcccccccCHHHHHHHhhhhcC
Q 001355 806 SVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 806 ~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
.|+++||-..-+|+..+..+.++|.+
T Consensus 102 ~illlDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 102 RLLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 79999999865899999999988863
No 316
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.93 E-value=0.3 Score=55.89 Aligned_cols=93 Identities=18% Similarity=0.277 Sum_probs=55.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccC--CCceEEeecCC-ccccCCCCccccCCCccccccccccchhhhHHHHHHHhCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGN--KGKLIHVDVSS-EQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKP 804 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs--~~~fv~id~s~-~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p 804 (1093)
.+++.|++|+|||+++++|...+... ...++.+.-.. .. ....+.+ .+ ....+ .+ ++.+.+..+++.+|
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~-~~~~~~v----~~-~~~~~-~~-~~~~~l~~aLR~~p 205 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQ-CAAPNVV----QL-RTSDD-AI-SMTRLLKATLRLRP 205 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhc-CCCCCEE----EE-EecCC-CC-CHHHHHHHHhcCCC
Confidence 58999999999999999999877432 33444443211 10 0000100 00 11111 11 55677888888877
Q ss_pred ceEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 805 YSVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 805 ~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
.+|++.||-. ++.. .+++++.+|.
T Consensus 206 -D~iivGEiR~---~ea~-~~l~a~~tGh 229 (299)
T TIGR02782 206 -DRIIVGEVRG---GEAL-DLLKAWNTGH 229 (299)
T ss_pred -CEEEEeccCC---HHHH-HHHHHHHcCC
Confidence 5777999876 4554 4578888873
No 317
>PRK13947 shikimate kinase; Provisional
Probab=93.88 E-value=0.061 Score=55.50 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=25.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
++++.|++|+|||++|+.||+.+ +-+|+..|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l---g~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL---SFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEECc
Confidence 58999999999999999999988 45555443
No 318
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.88 E-value=0.26 Score=57.71 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=57.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhcc---CCCceEEeecC-CccccCCCCccccCCCcc-ccccccccchhhhHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFG---NKGKLIHVDVS-SEQRVSQPNSIFDCQNID-FCDCKLRGKVLVDYIYQEFR 801 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfg---s~~~fv~id~s-~~~~~~~~~si~~~~~l~-G~~~g~~g~~~~~~l~eal~ 801 (1093)
..++++||+|+|||++.++|.+.+.. ....++.+.=. ++.- ...... ...+ ....+-...++...+..+++
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~-~~~~~~---~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVY-DEIETI---SASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEec-cccccc---cceeeeeeccccccCHHHHHHHHhc
Confidence 36999999999999999999987732 22233322111 1100 000000 0000 00000001245567778888
Q ss_pred hCCceEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 802 SKPYSVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 802 ~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
..|. +|++.|+.. .+.....+++..+|.
T Consensus 211 ~~Pd-~i~vGEiRd---~et~~~al~aa~tGh 238 (358)
T TIGR02524 211 RKPH-AILVGEARD---AETISAALEAALTGH 238 (358)
T ss_pred cCCC-EEeeeeeCC---HHHHHHHHHHHHcCC
Confidence 8885 888998654 777788888998884
No 319
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.87 E-value=0.26 Score=59.13 Aligned_cols=40 Identities=20% Similarity=0.108 Sum_probs=31.0
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE 765 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~ 765 (1093)
+..++|+|++|+|||+++..||..+-........+++..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 4689999999999999999999877544445555666654
No 320
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.85 E-value=0.044 Score=54.57 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.2
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++++|++|+|||++|+.|++.+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 37999999999999999999877
No 321
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.76 E-value=0.32 Score=58.31 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=31.5
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHHhc-cCCCceEEeecCCc
Q 001355 725 RGIWLAFLGPDKVGKKKIASALAEIVF-GNKGKLIHVDVSSE 765 (1093)
Q Consensus 725 ~~~~LLf~Gp~GvGKT~lAraLA~~lf-gs~~~fv~id~s~~ 765 (1093)
.+..++|.|++|+|||++|.-||..+. ..+.....+++..+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 347899999999999999999998764 23455566777653
No 322
>PF13479 AAA_24: AAA domain
Probab=93.68 E-value=0.19 Score=54.49 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=18.6
Q ss_pred CeEEEeeCCCCChHHHHHHHH
Q 001355 726 GIWLAFLGPDKVGKKKIASAL 746 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraL 746 (1093)
..-++++|++|+|||.+|..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 356999999999999998876
No 323
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.65 E-value=0.063 Score=56.05 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=26.7
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+++.|++|+|||++|+.||+.+ .+++++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~-----~~~~is~~d 32 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF-----GFTHLSAGD 32 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCeEEECCh
Confidence 7899999999999999999977 367777764
No 324
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.64 E-value=0.36 Score=54.78 Aligned_cols=132 Identities=15% Similarity=0.136 Sum_probs=75.3
Q ss_pred CCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcE
Q 001355 231 KNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGV 307 (1093)
Q Consensus 231 ~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gv 307 (1093)
.+.+|.|++|.| +++.++..+.+. |.++ .-.++.+. ...++. .+.|+-+.++.++. ++. . |-
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~--g~~~----~~~~v~v~--~~~l~~--~~~g~~~~~~~~~~---~~a-~-~g 123 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRL--GYVR----KGHLVSVT--RDDLVG--QYIGHTAPKTKEIL---KRA-M-GG 123 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCcc----cceEEEec--HHHHhH--hhcccchHHHHHHH---HHc-c-Cc
Confidence 367788999998 356666665542 3222 23466665 334432 12233344444443 332 2 34
Q ss_pred EEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEEEecccHHHHHhhhhcCCCCCCCCcceeeecc
Q 001355 308 VVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDLQLLPIH 380 (1093)
Q Consensus 308 il~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~Lq~v~i~ 380 (1093)
||||||++.+.......+....++..|-.++. ..++++.+|+++ +-..=..+..-+|+|.+++..+ +.+|
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le-~~~~~~~vI~a~-~~~~~~~~~~~np~L~sR~~~~-i~fp 193 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NQRDDLVVILAG-YKDRMDSFFESNPGFSSRVAHH-VDFP 193 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHh-cCCCCEEEEEeC-CcHHHHHHHhhCHHHHhhCCcE-EEeC
Confidence 89999999986433222234455566667775 345789999973 4333334445679998887533 4444
No 325
>PHA01747 putative ATP-dependent protease
Probab=93.56 E-value=0.25 Score=57.30 Aligned_cols=101 Identities=12% Similarity=0.162 Sum_probs=61.8
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccc----cccccchhhhHHHHHH
Q 001355 725 RGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCD----CKLRGKVLVDYIYQEF 800 (1093)
Q Consensus 725 ~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~----~g~~g~~~~~~l~eal 800 (1093)
....++=.||.|||||++-+.+.+.. ++.. .+..... ..+|... .|.+|
T Consensus 189 ~NyNliELgPRGTGKS~~f~eis~fs-----p~~i--SGG~~Tv---------A~LFyN~~t~~~GLVg----------- 241 (425)
T PHA01747 189 RPVHIIELSNRGTGKTTTFVILQELF-----NFRY--YTEPPTY---------ANLVYDAKTNALGLVF----------- 241 (425)
T ss_pred CCeeEEEecCCCCChhhHHHHhhhcC-----Ccee--eCCCCch---------HHheEecCCCceeEEe-----------
Confidence 44789999999999999999987632 1111 1111000 1111110 11111
Q ss_pred HhCCceEEEEccccccc--C-HHHHHHHhhhhcCCeEecCCCeEee----cCCcEEEEecCC
Q 001355 801 RSKPYSVVFLEDLDKAA--D-PIVQSSLTKAISTGKFTDSYGRDVS----ISGMIFVATSTI 855 (1093)
Q Consensus 801 ~~~p~~VI~LDEVDkia--d-~~vq~~Ll~aLe~Gr~~d~~G~~V~----l~naI~IlTSN~ 855 (1093)
-+.+|.||||..+. + .++...|+.+|++|.+.++.+...+ ..++=+|+..|.
T Consensus 242 ---~~D~VaFDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNi 300 (425)
T PHA01747 242 ---LSNGLIFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNP 300 (425)
T ss_pred ---eccEEEEEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCC
Confidence 14599999999733 2 5788999999999999987653221 124557777775
No 326
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.56 E-value=0.25 Score=56.59 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=54.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC-CccccCCCCccccCCCcc-cc-ccccccchhhhHHHHHHHhCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS-SEQRVSQPNSIFDCQNID-FC-DCKLRGKVLVDYIYQEFRSKP 804 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s-~~~~~~~~~si~~~~~l~-G~-~~g~~g~~~~~~l~eal~~~p 804 (1093)
.+++.||+|+|||++.++|...+- .....+.++-. +.. ....+.+ .++ .. ..+....+..+.+..+++.+|
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~-~~~~iv~ied~~El~-~~~~~~~----~l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIP-KDERIITIEDTREIF-LPHPNYV----HLFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCC-ccccEEEEcCccccC-CCCCCEE----EEEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 699999999999999999997763 33344455311 110 0000110 000 00 111112344566777787776
Q ss_pred ceEEEEcccccccCHHHHHHHhhhhcCC
Q 001355 805 YSVVFLEDLDKAADPIVQSSLTKAISTG 832 (1093)
Q Consensus 805 ~~VI~LDEVDkiad~~vq~~Ll~aLe~G 832 (1093)
.+|++||+-. .++. .+++++.+|
T Consensus 220 -d~ii~gE~r~---~e~~-~~l~a~~~g 242 (308)
T TIGR02788 220 -DRIILGELRG---DEAF-DFIRAVNTG 242 (308)
T ss_pred -CeEEEeccCC---HHHH-HHHHHHhcC
Confidence 6889999876 4554 467777666
No 327
>PRK03839 putative kinase; Provisional
Probab=93.53 E-value=0.069 Score=55.85 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.|++|+|||++|+.||+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999987
No 328
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.49 E-value=0.1 Score=54.06 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=33.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
..+.|+|.+|+|||+||++|.+.++....+.+.+|...
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~ 40 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDN 40 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcc
Confidence 57899999999999999999999998888888898765
No 329
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.30 E-value=0.31 Score=60.51 Aligned_cols=93 Identities=14% Similarity=0.181 Sum_probs=59.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC-CccccCCCCccccCCCcccccc-ccccchhhhHHHHHHHhCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS-SEQRVSQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFRSKP 804 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s-~~~~~~~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~~~p 804 (1093)
+.++|+||+|+|||++..++-+.+......++.+.=. +|. + ++...... .-.|.++...+..+++..|
T Consensus 317 Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~-------~---~~~~q~~v~~~~g~~~~~~l~~~LR~dP 386 (564)
T TIGR02538 317 GMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEIN-------L---PGINQVNVNPKIGLTFAAALRSFLRQDP 386 (564)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceec-------C---CCceEEEeccccCCCHHHHHHHHhccCC
Confidence 3699999999999998877666664333344432211 111 0 00000000 1124567778888888888
Q ss_pred ceEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 805 YSVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 805 ~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
.||++.||-. .+.....+++..+|.
T Consensus 387 -DvI~vGEiRd---~eta~~a~~aa~tGH 411 (564)
T TIGR02538 387 -DIIMVGEIRD---LETAEIAIKAAQTGH 411 (564)
T ss_pred -CEEEeCCCCC---HHHHHHHHHHHHcCC
Confidence 6999999865 777777888888875
No 330
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.29 E-value=0.066 Score=51.84 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=20.7
Q ss_pred EEeeCCCCChHHHHHHHHHHHh
Q 001355 729 LAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+++.|++|+|||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999986
No 331
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.29 E-value=0.11 Score=54.20 Aligned_cols=36 Identities=28% Similarity=0.189 Sum_probs=28.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
..++|.|++|+|||++|+.|++.+.......+.+|.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 579999999999999999999988544444555653
No 332
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.28 E-value=0.3 Score=52.08 Aligned_cols=37 Identities=27% Similarity=0.252 Sum_probs=30.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..+.|+|++|+|||++|+.|+..++......+.+|..
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d 61 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGD 61 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCE
Confidence 5789999999999999999999987665556667643
No 333
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.17 E-value=0.44 Score=53.97 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC--CCce
Q 001355 680 PRDYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN--KGKL 757 (1093)
Q Consensus 680 ~e~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs--~~~f 757 (1093)
.+-.+.|.+.+.+. ...+++...+...|.........+ .+..+.+..++|.||+|+|||+++..||..+... ....
T Consensus 150 ~~la~~L~~~l~~~-~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V 227 (282)
T TIGR03499 150 PELARELLEKLPER-ADAEDAWRWLREALEKMLPVKPEE-DEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKV 227 (282)
T ss_pred HHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHHhccCCcc-ccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeE
Confidence 33444555555432 222345555555555443211111 1111123478999999999999999998766422 2344
Q ss_pred EEeecCC
Q 001355 758 IHVDVSS 764 (1093)
Q Consensus 758 v~id~s~ 764 (1093)
..+++..
T Consensus 228 ~li~~D~ 234 (282)
T TIGR03499 228 ALITTDT 234 (282)
T ss_pred EEEECCc
Confidence 4455544
No 334
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.16 E-value=0.28 Score=57.11 Aligned_cols=97 Identities=13% Similarity=0.220 Sum_probs=54.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC-CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS-SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s-~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
.+++.||+|+|||++.++|...+-. ....+.+.=. +..- ...+.+. -.+.....+.-+.++.+.+..+++.+| .
T Consensus 164 nilI~G~tGSGKTTll~aLl~~i~~-~~rivtiEd~~El~l-~~~~~v~--l~~~~~~~~~~~~t~~~ll~~~LR~~p-D 238 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPP-QERLITIEDTLELVI-PHENHVR--LLYSKNGAGLGAVTAEHLLQASLRMRP-D 238 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcccCC-CCCEEEECCCccccC-CCCCEEE--EEeeccccCcCccCHHHHHHHHhcCCC-C
Confidence 5999999999999999999987643 3444443311 1100 0000000 000000011112344567777888877 5
Q ss_pred EEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 807 VVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 807 VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
+|++-|+-- .+... +++++.+|.
T Consensus 239 ~IivGEiR~---~ea~~-~l~a~~tGh 261 (344)
T PRK13851 239 RILLGEMRD---DAAWA-YLSEVVSGH 261 (344)
T ss_pred eEEEEeeCc---HHHHH-HHHHHHhCC
Confidence 788889866 44544 667777663
No 335
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=93.12 E-value=0.24 Score=58.94 Aligned_cols=136 Identities=10% Similarity=0.077 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
..+.|.+.+.-.|+|+.++..++.-.+.-.-- ....++-.=++++.++|.|.||+.|+.+-+.|.+.--++ .+..--
T Consensus 332 ~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd-~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRg--vYTTGr 408 (721)
T KOG0482|consen 332 FYEKLAASIAPEIYGHEDVKKALLLLLVGGVD-KSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRG--VYTTGR 408 (721)
T ss_pred HHHHHHHhhchhhccchHHHHHHHHHhhCCCC-CCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCccc--ceecCC
Confidence 35678888888999999999887765543211 111112222567999999999999999999988764221 111000
Q ss_pred cCCcccc---CCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEec
Q 001355 762 VSSEQRV---SQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTD 836 (1093)
Q Consensus 762 ~s~~~~~---~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d 836 (1093)
.++--+. .-.+.+.+.--+ + .+++--...+|-.|||+|| |+..-..++-+.||...+..
T Consensus 409 GSSGVGLTAAVmkDpvTgEM~L----E-----------GGALVLAD~GICCIDEfDK-M~e~DRtAIHEVMEQQTISI 470 (721)
T KOG0482|consen 409 GSSGVGLTAAVMKDPVTGEMVL----E-----------GGALVLADGGICCIDEFDK-MDESDRTAIHEVMEQQTISI 470 (721)
T ss_pred CCCccccchhhhcCCCCCeeEe----c-----------cceEEEccCceEeehhhhh-hhhhhhHHHHHHHHhhhhhh
Confidence 0000000 000011000000 0 0122223457899999999 99999999999999765543
No 336
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.06 E-value=0.095 Score=52.82 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=21.1
Q ss_pred EEeeCCCCChHHHHHHHHHHHh
Q 001355 729 LAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
++++|++|+|||++|+.||+.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 337
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.02 E-value=0.27 Score=54.06 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=25.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..+++.|++|+|||.+|..++..........++++..
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 3699999999999999865554443344555666643
No 338
>PRK00625 shikimate kinase; Provisional
Probab=93.00 E-value=0.1 Score=54.87 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|+|.+|+|||++++.||+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 339
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.89 E-value=0.16 Score=45.02 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEeeCCCCChHHHHHHHHHHHh
Q 001355 729 LAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+.+.|++|+|||+++++|++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 340
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.89 E-value=0.61 Score=53.91 Aligned_cols=92 Identities=16% Similarity=0.264 Sum_probs=54.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhcc--CCCceEEeecC-CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFG--NKGKLIHVDVS-SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKP 804 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfg--s~~~fv~id~s-~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p 804 (1093)
.+++.|++|+|||++.++|...+.. ....++.+.=. +..- ...+.+ .+.. .. +.++.+.+..+++.+|
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~-~~~n~v----~l~~-~~---~~~~~~lv~~aLR~~P 216 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQC-AAENAV----ALHT-SD---TVDMARLLKSTMRLRP 216 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccccc-CCCCEE----Eecc-CC---CcCHHHHHHHHhCCCC
Confidence 4899999999999999999987731 22344443311 1100 000000 0110 01 2245567778888777
Q ss_pred ceEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 805 YSVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 805 ~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
..|++-||-. .+.. .+++++.+|.
T Consensus 217 -D~IivGEiRg---~ea~-~~l~a~~tGh 240 (323)
T PRK13833 217 -DRIIVGEVRD---GAAL-TLLKAWNTGH 240 (323)
T ss_pred -CEEEEeecCC---HHHH-HHHHHHcCCC
Confidence 5777899866 3444 4688888773
No 341
>PRK14532 adenylate kinase; Provisional
Probab=92.87 E-value=0.1 Score=54.93 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=26.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.++|.||+|+|||++|+.||+.+ .+.+++++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~-----g~~~is~~d 33 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER-----GMVQLSTGD 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCeEEeCcH
Confidence 38899999999999999999876 356677654
No 342
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.85 E-value=0.12 Score=54.15 Aligned_cols=38 Identities=29% Similarity=0.342 Sum_probs=33.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
..+-|+|.+|+|||++|.+|.+.|+........+|...
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDn 61 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDN 61 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChh
Confidence 57889999999999999999999998888877788654
No 343
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.82 E-value=0.24 Score=51.18 Aligned_cols=46 Identities=17% Similarity=0.332 Sum_probs=30.3
Q ss_pred CCchhhHHHHHHHhhcccccCCCCcEEeccchhh---HHHHHHHHHhcC
Q 001355 209 DDVDENCRRIGEVLAGRDEKKGKNPLLVGVCANS---ALKGFVESVNGG 254 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~ 254 (1093)
.||++++.++.+.|.+...+..++.+|+|++|+| .++.++.++.+.
T Consensus 3 vgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 3 VGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4899999999999965444667899999999998 377777777664
No 344
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.82 E-value=0.97 Score=53.60 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=84.3
Q ss_pred CCchhhHHHHHHHhh---cccc-------cCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechh
Q 001355 209 DDVDENCRRIGEVLA---GRDE-------KKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEI 275 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~---R~~~-------~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~ 275 (1093)
+|.|+.++.+.+.+. ++++ ...++.+|.|.+|.| .++.++... +..++.+. .
T Consensus 134 ~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~-------------~~~~i~v~--~ 198 (389)
T PRK03992 134 GGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET-------------NATFIRVV--G 198 (389)
T ss_pred CCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh-------------CCCEEEee--h
Confidence 467888777777653 2111 234688999999998 367776653 23466666 5
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcc--hHHHHHHHHHHhhhcC----CCCCcEEEE
Q 001355 276 NEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVST--EAARFVVSQLTSLLKS----GNGEKLWLI 349 (1093)
Q Consensus 276 ~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~--~~~~~~v~el~~Ll~~----~~~g~lwli 349 (1093)
+.++ ..+-++.+..+.++-...+. ..+.||||||+.-+.+..... ..-..+...+..||.. ...+.+++|
T Consensus 199 ~~l~--~~~~g~~~~~i~~~f~~a~~--~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI 274 (389)
T PRK03992 199 SELV--QKFIGEGARLVRELFELARE--KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKII 274 (389)
T ss_pred HHHh--HhhccchHHHHHHHHHHHHh--cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEE
Confidence 5552 33556677777777766654 457889999999998643211 1111122233344421 124689999
Q ss_pred EecccHHHHHhhhhcCCCCCC--CCcce
Q 001355 350 GAAMSYETYLKMLAKFPGLDN--DWDLQ 375 (1093)
Q Consensus 350 G~a~T~~tY~k~~~~~PslE~--~w~Lq 375 (1093)
||| +.-. .-+|+|=+ +|+..
T Consensus 275 ~aT-n~~~-----~ld~allRpgRfd~~ 296 (389)
T PRK03992 275 AAT-NRID-----ILDPAILRPGRFDRI 296 (389)
T ss_pred Eec-CChh-----hCCHHHcCCccCceE
Confidence 984 5432 34566644 55544
No 345
>PRK07261 topology modulation protein; Provisional
Probab=92.80 E-value=0.11 Score=54.43 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=24.4
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
+++.|++|+|||++|+.|++.+ +-+++.+|
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~---~~~~i~~D 32 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY---NCPVLHLD 32 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCCeEecC
Confidence 7899999999999999999875 33455544
No 346
>PRK06762 hypothetical protein; Provisional
Probab=92.72 E-value=0.14 Score=52.59 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=25.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
..++|+|++|+|||++|+.|++.+ + ..++.++.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l-~--~~~~~i~~ 35 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL-G--RGTLLVSQ 35 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-C--CCeEEecH
Confidence 468899999999999999999987 2 23445543
No 347
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.68 E-value=0.11 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEeeCCCCChHHHHHHHHHHHh
Q 001355 729 LAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
++|.|++|+|||++|+.|++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999999875
No 348
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.67 E-value=0.11 Score=54.38 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=26.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
.++|.|++|+|||++|+.|++.+ ...+++++..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~---~~~~~~~~~D 36 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVL---AEPWLHFGVD 36 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh---CCCccccCcc
Confidence 58999999999999999999886 3345555544
No 349
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.61 E-value=0.097 Score=53.71 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEeeCCCCChHHHHHHHHHHHh
Q 001355 729 LAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+++.||+|+|||++|+.|++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999987
No 350
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.54 E-value=0.59 Score=52.13 Aligned_cols=125 Identities=17% Similarity=0.136 Sum_probs=72.4
Q ss_pred CCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcE
Q 001355 231 KNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGV 307 (1093)
Q Consensus 231 ~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gv 307 (1093)
.|.+|.|.||.| .++.++..+... |.+ ....++.++ -..|+. .+-++.+.+++++.+.. . |-
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~--~~~----~~~~~v~~~--~~~l~~--~~~g~~~~~~~~~~~~a----~-~~ 107 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEM--NVL----SKGHLIEVE--RADLVG--EYIGHTAQKTREVIKKA----L-GG 107 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhc--Ccc----cCCceEEec--HHHhhh--hhccchHHHHHHHHHhc----c-CC
Confidence 366899999998 467777665432 332 233567666 555532 35566677777665432 2 23
Q ss_pred EEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEEEecccHHHHHhhhhcCCCCCCCCc
Q 001355 308 VVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLIGAAMSYETYLKMLAKFPGLDNDWD 373 (1093)
Q Consensus 308 il~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~ 373 (1093)
||||||+|.|...+. ..-...++..+-+.+. ..++.+.+|+++ +..+-..+..-+|+|.+++.
T Consensus 108 VL~IDE~~~L~~~~~-~~~~~~~i~~Ll~~~e-~~~~~~~vila~-~~~~~~~~~~~~p~L~sRf~ 170 (261)
T TIGR02881 108 VLFIDEAYSLARGGE-KDFGKEAIDTLVKGME-DNRNEFVLILAG-YSDEMDYFLSLNPGLRSRFP 170 (261)
T ss_pred EEEEechhhhccCCc-cchHHHHHHHHHHHHh-ccCCCEEEEecC-CcchhHHHHhcChHHHhccc
Confidence 889999999975322 1122233334444443 234667777652 33222344556788888874
No 351
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=92.54 E-value=0.27 Score=53.73 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=29.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
..++++|++|+|||.++..++..........++++...
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 46899999999999999998765444566666666643
No 352
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.53 E-value=0.75 Score=52.41 Aligned_cols=136 Identities=11% Similarity=0.068 Sum_probs=70.4
Q ss_pred HHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC------CCceE
Q 001355 685 TLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN------KGKLI 758 (1093)
Q Consensus 685 ~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs------~~~fv 758 (1093)
++..-...+.||...|...+... .... ..|++..- -.+|++|+++.|||++++...+.---. .-+++
T Consensus 27 RI~~i~~~rWIgY~~A~~~L~~L-~~Ll---~~P~~~Rm---p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv 99 (302)
T PF05621_consen 27 RIAYIRADRWIGYPRAKEALDRL-EELL---EYPKRHRM---PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVV 99 (302)
T ss_pred HHHHHhcCCeecCHHHHHHHHHH-HHHH---hCCcccCC---CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEE
Confidence 44555578899999886554433 2221 22222111 149999999999999999888643211 11456
Q ss_pred EeecCCccccCC-CCccccCCCcccccccccc--chhhhHHHHHHHhCCceEEEEccccccc--CHHHHHHHhhhhc
Q 001355 759 HVDVSSEQRVSQ-PNSIFDCQNIDFCDCKLRG--KVLVDYIYQEFRSKPYSVVFLEDLDKAA--DPIVQSSLTKAIS 830 (1093)
Q Consensus 759 ~id~s~~~~~~~-~~si~~~~~l~G~~~g~~g--~~~~~~l~eal~~~p~~VI~LDEVDkia--d~~vq~~Ll~aLe 830 (1093)
.+.+....+... ...+. ..+|.+..-+. ..........++...-.+|+||||+.++ ...-|..++.+|.
T Consensus 100 ~vq~P~~p~~~~~Y~~IL---~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK 173 (302)
T PF05621_consen 100 YVQMPPEPDERRFYSAIL---EALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK 173 (302)
T ss_pred EEecCCCCChHHHHHHHH---HHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH
Confidence 666543111000 00010 11122111000 0111234456667677899999999833 3334555555553
No 353
>PLN02200 adenylate kinase family protein
Probab=92.53 E-value=0.18 Score=55.62 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=29.3
Q ss_pred CCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 724 KRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 724 k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+....+++.|+||+|||++|+.||+.+ .+.+++++.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~-----g~~his~gd 76 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETF-----GFKHLSAGD 76 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh-----CCeEEEccH
Confidence 445678999999999999999999876 356777764
No 354
>PRK06217 hypothetical protein; Validated
Probab=92.45 E-value=0.12 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-|++.|.+|+|||++|+.|++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999987
No 355
>PRK10436 hypothetical protein; Provisional
Probab=92.41 E-value=0.55 Score=56.87 Aligned_cols=94 Identities=15% Similarity=0.193 Sum_probs=57.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccc-cccchhhhHHHHHHHhCCc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~ 805 (1093)
+.+|++||+|+|||++..++-+.+......++.+. . ..+. .+ ++......+ -.|.++...+...++..|
T Consensus 219 GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiE--D---PvE~-~l---~gi~Q~~v~~~~g~~f~~~lr~~LR~dP- 288 (462)
T PRK10436 219 GLILVTGPTGSGKTVTLYSALQTLNTAQINICSVE--D---PVEI-PL---AGINQTQIHPKAGLTFQRVLRALLRQDP- 288 (462)
T ss_pred CeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEec--C---Cccc-cC---CCcceEeeCCccCcCHHHHHHHHhcCCC-
Confidence 36999999999999987766555543334443332 1 1110 00 000000000 124467778888888887
Q ss_pred eEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 806 SVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 806 ~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
.||++.||-. .+.....+++..+|.
T Consensus 289 DvI~vGEIRD---~eta~~al~AA~TGH 313 (462)
T PRK10436 289 DVIMVGEIRD---GETAEIAIKAAQTGH 313 (462)
T ss_pred CEEEECCCCC---HHHHHHHHHHHHcCC
Confidence 6999999865 667777778888885
No 356
>PRK06547 hypothetical protein; Provisional
Probab=92.40 E-value=0.17 Score=53.15 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=21.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+++.|++|+|||++|+.|++.+
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 468889999999999999999985
No 357
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.31 E-value=0.55 Score=52.87 Aligned_cols=84 Identities=13% Similarity=0.180 Sum_probs=50.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHH----HHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQE----FRS 802 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~ea----l~~ 802 (1093)
+.+|+.|..|+||+.+++..| .+. .-.++.+.++. +|.-.++.+.+..+ --+
T Consensus 32 Gh~LLvG~~GsGr~sl~rLaa-~i~--~~~~~~i~~~~---------------------~y~~~~f~~dLk~~~~~ag~~ 87 (268)
T PF12780_consen 32 GHALLVGVGGSGRQSLARLAA-FIC--GYEVFQIEITK---------------------GYSIKDFKEDLKKALQKAGIK 87 (268)
T ss_dssp EEEEEECTTTSCHHHHHHHHH-HHT--TEEEE-TTTST---------------------TTHHHHHHHHHHHHHHHHHCS
T ss_pred CCeEEecCCCccHHHHHHHHH-HHh--ccceEEEEeeC---------------------CcCHHHHHHHHHHHHHHHhcc
Confidence 479999999999999998554 442 23334443321 11111222233332 224
Q ss_pred CCceEEEEcccccccCHHHHHHHhhhhcCCeEe
Q 001355 803 KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFT 835 (1093)
Q Consensus 803 ~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~ 835 (1093)
+...|++|+|-+- .+..+...+-.+|.+|.+.
T Consensus 88 ~~~~vfll~d~qi-~~~~fLe~in~LL~sGeip 119 (268)
T PF12780_consen 88 GKPTVFLLTDSQI-VDESFLEDINSLLSSGEIP 119 (268)
T ss_dssp -S-EEEEEECCCS-SSCHHHHHHHHHHHCSS-T
T ss_pred CCCeEEEecCccc-chHhHHHHHHHHHhCCCCC
Confidence 5567889999777 7888888888888887654
No 358
>PRK08233 hypothetical protein; Provisional
Probab=92.29 E-value=0.17 Score=52.44 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=26.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..+.+.|++|+|||++|+.|++.+.. ...+.+|.-
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~--~~~~~~d~~ 38 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKN--SKALYFDRY 38 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCC--CceEEECCE
Confidence 57889999999999999999998732 244555543
No 359
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.28 E-value=0.12 Score=54.56 Aligned_cols=31 Identities=35% Similarity=0.592 Sum_probs=26.6
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
++|.||||+||+++|+.||+.+ .+.++|-+.
T Consensus 3 iiilG~pGaGK~T~A~~La~~~-----~i~hlstgd 33 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL-----GLPHLDTGD 33 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----CCcEEcHhH
Confidence 8999999999999999999984 567777554
No 360
>CHL00176 ftsH cell division protein; Validated
Probab=92.21 E-value=0.81 Score=57.57 Aligned_cols=139 Identities=16% Similarity=0.168 Sum_probs=78.0
Q ss_pred hhhHHHHHHHhhcccc------cCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCC
Q 001355 212 DENCRRIGEVLAGRDE------KKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGR 282 (1093)
Q Consensus 212 deeirrv~~vL~R~~~------~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~ 282 (1093)
.++++.+++.|...+. +..++.+|+|.+|.| .++.++... ++.++.+. .+.|+ .
T Consensus 192 k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-------------~~p~i~is--~s~f~--~ 254 (638)
T CHL00176 192 KEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-------------EVPFFSIS--GSEFV--E 254 (638)
T ss_pred HHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-------------CCCeeecc--HHHHH--H
Confidence 4566666666654111 123588999999998 366666542 34577776 55553 1
Q ss_pred ccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCC-----cchHHHHHHHHHHhhhcC-CCCCcEEEEEecccHH
Q 001355 283 VNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSV-----STEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYE 356 (1093)
Q Consensus 283 ~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~-----~~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~ 356 (1093)
.+.+.-..++.++-..... ..+.||||||++-+....+ .....+..+..+=..+.. ..+..+-+||+| +.-
T Consensus 255 ~~~g~~~~~vr~lF~~A~~--~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaT-N~~ 331 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKE--NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAAT-NRV 331 (638)
T ss_pred HhhhhhHHHHHHHHHHHhc--CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEec-Cch
Confidence 2233344566666555543 5688999999999975321 112233333332222221 123468999984 543
Q ss_pred HHHhhhhcCCCCCC--CCcce
Q 001355 357 TYLKMLAKFPGLDN--DWDLQ 375 (1093)
Q Consensus 357 tY~k~~~~~PslE~--~w~Lq 375 (1093)
+ .-+|+|-+ +||.+
T Consensus 332 ~-----~LD~ALlRpGRFd~~ 347 (638)
T CHL00176 332 D-----ILDAALLRPGRFDRQ 347 (638)
T ss_pred H-----hhhhhhhccccCceE
Confidence 3 23566654 56665
No 361
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=92.19 E-value=0.32 Score=55.76 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=26.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
..++|+|.+|+|||++++.||+.+ +-+|+.+|
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~L---g~~~id~D 165 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARL---GVPFVELN 165 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc---CCCEEeHH
Confidence 369999999999999999999988 45566433
No 362
>PRK14531 adenylate kinase; Provisional
Probab=92.19 E-value=0.14 Score=54.05 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=26.2
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
-++|+||||+|||++++.||+.+ .+.+++++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~-----g~~~is~gd 35 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH-----GLRHLSTGD 35 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCeEeccc
Confidence 38999999999999999999986 345666654
No 363
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=91.96 E-value=0.91 Score=61.19 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=34.6
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
.++|.++.+..+...+.. ... ..-.+.++|+.|+|||++|++++..+..
T Consensus 185 ~~vG~~~~l~~l~~lL~l-----~~~------~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 185 DFVGIEDHIAKMSSLLHL-----ESE------EVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred cccchHHHHHHHHHHHcc-----ccC------ceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 467888777776655421 111 1236899999999999999999877643
No 364
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=91.93 E-value=0.31 Score=54.94 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
.++|.||+|+|||++.+.|+..+..
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCC
Confidence 4899999999999999999988753
No 365
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.89 E-value=0.16 Score=53.23 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=25.6
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
++++|++|+|||++|+.||+.+ .+..++++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~-----~~~~i~~~~ 32 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY-----GLPHISTGD 32 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCeEEECcH
Confidence 7899999999999999999975 345666553
No 366
>PRK13949 shikimate kinase; Provisional
Probab=91.88 E-value=0.15 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.7
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++++|++|+|||++++.||+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999988
No 367
>CHL00195 ycf46 Ycf46; Provisional
Probab=91.86 E-value=0.75 Score=56.10 Aligned_cols=125 Identities=12% Similarity=0.134 Sum_probs=84.1
Q ss_pred CCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCc
Q 001355 230 GKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPG 306 (1093)
Q Consensus 230 k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~g 306 (1093)
.+..+|+|.+|.| .++.++... ++.++.++ ++.+. .++-|+-|.+++++-+.++. ..+
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~-------------~~~~~~l~--~~~l~--~~~vGese~~l~~~f~~A~~--~~P 319 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDW-------------QLPLLRLD--VGKLF--GGIVGESESRMRQMIRIAEA--LSP 319 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh-------------CCCEEEEE--hHHhc--ccccChHHHHHHHHHHHHHh--cCC
Confidence 4568899999998 366666652 45688888 77774 34678889999999887775 468
Q ss_pred EEEEeCcchhhhcCC---CcchHHHHHHHHHHhhhcCCCCCcEEEEEecccHHHHHhhhhcCCCCCC--CCcce-eeecc
Q 001355 307 VVVNYGELKVLVSDS---VSTEAARFVVSQLTSLLKSGNGEKLWLIGAAMSYETYLKMLAKFPGLDN--DWDLQ-LLPIH 380 (1093)
Q Consensus 307 vil~igdl~~~v~~~---~~~~~~~~~v~el~~Ll~~~~~g~lwliG~a~T~~tY~k~~~~~PslE~--~w~Lq-~v~i~ 380 (1093)
.||||||+.-+.... +..+....++..+-..+. .....+.+|||| ..- ..-+|+|=+ +||.. .|+.|
T Consensus 320 ~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~-~~~~~V~vIaTT-N~~-----~~Ld~allR~GRFD~~i~v~lP 392 (489)
T CHL00195 320 CILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLS-EKKSPVFVVATA-NNI-----DLLPLEILRKGRFDEIFFLDLP 392 (489)
T ss_pred cEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHh-cCCCceEEEEec-CCh-----hhCCHHHhCCCcCCeEEEeCCc
Confidence 999999999887632 223455555555444444 224569999984 432 245667655 67655 45666
No 368
>PRK00889 adenylylsulfate kinase; Provisional
Probab=91.77 E-value=0.23 Score=51.69 Aligned_cols=37 Identities=30% Similarity=0.240 Sum_probs=29.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
-.+.|.|++|+|||++|+.|+..+...+..++.+|..
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 3689999999999999999999886444455666654
No 369
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.76 E-value=0.17 Score=50.43 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.9
Q ss_pred EEeeCCCCChHHHHHHHHHHHh
Q 001355 729 LAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+++.|++|+|||++|+.||+.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999987
No 370
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.71 E-value=0.14 Score=53.70 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=24.7
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLI 758 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv 758 (1093)
+++|.|+.|+|||++.+.||+.+ +-+|+
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L---~~~F~ 31 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKAL---NLPFI 31 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHc---CCCcc
Confidence 69999999999999999999998 44553
No 371
>PRK14530 adenylate kinase; Provisional
Probab=91.70 E-value=0.18 Score=54.58 Aligned_cols=32 Identities=31% Similarity=0.385 Sum_probs=26.2
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.++|.||+|+|||++|+.||+.+ .+.+++.+.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~-----~~~~i~~g~ 36 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF-----GVEHVTTGD 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCeEEeccH
Confidence 48999999999999999999987 345566554
No 372
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.67 E-value=0.19 Score=51.28 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=26.8
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
++|.|++|+|||++|+.|++.+.......+.++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 7899999999999999999988644434455553
No 373
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=91.64 E-value=0.69 Score=55.04 Aligned_cols=81 Identities=21% Similarity=0.357 Sum_probs=51.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhC--Cc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSK--PY 805 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~--p~ 805 (1093)
.+++.||-+||||++.+.|.+.+-.. ++.++..+.... . ....+.+....... ..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~-----------------~---~~l~d~~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLD-----------------R---IELLDLLRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcc-----------------h---hhHHHHHHHHHHhhccCC
Confidence 68999999999999999888877332 555554431100 0 00011111111111 33
Q ss_pred eEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 806 SVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 806 ~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
..||||||.. . +..+..|..+.+.|.
T Consensus 96 ~yifLDEIq~-v-~~W~~~lk~l~d~~~ 121 (398)
T COG1373 96 SYIFLDEIQN-V-PDWERALKYLYDRGN 121 (398)
T ss_pred ceEEEecccC-c-hhHHHHHHHHHcccc
Confidence 6999999998 5 558888888888775
No 374
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.59 E-value=0.5 Score=47.93 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=54.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccc-cchhhhHHHHHHHhCCce
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLR-GKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~-g~~~~~~l~eal~~~p~~ 806 (1093)
.+.+.||+|+|||++.+.|+......... |.+|-.. .+++-..+. |....=.+..++-.+| .
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~~~~---------------~i~~~~~lS~G~~~rv~laral~~~p-~ 90 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTWGSTV---------------KIGYFEQLSGGEKMRLALAKLLLENP-N 90 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceE-EEECCeE---------------EEEEEccCCHHHHHHHHHHHHHhcCC-C
Confidence 68999999999999999998765322222 3333210 001100011 1111123566666666 7
Q ss_pred EEEEcccccccCHHHHHHHhhhhcC
Q 001355 807 VVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 807 VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
++++||-..-+|...+..|.+++.+
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKE 115 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHH
Confidence 9999999865899999999999874
No 375
>PRK13948 shikimate kinase; Provisional
Probab=91.55 E-value=0.22 Score=52.86 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=26.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
..++|.|..|+|||++++.||+.+ ..+|+..|
T Consensus 11 ~~I~LiG~~GsGKSTvg~~La~~l---g~~~iD~D 42 (182)
T PRK13948 11 TWVALAGFMGTGKSRIGWELSRAL---MLHFIDTD 42 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc---CCCEEECC
Confidence 579999999999999999999988 45665444
No 376
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.53 E-value=0.41 Score=50.03 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=56.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcccc---CCC--CccccCCCcccc------ccccc-cchhhhH
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRV---SQP--NSIFDCQNIDFC------DCKLR-GKVLVDY 795 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~---~~~--~si~~~~~l~G~------~~g~~-g~~~~~~ 795 (1093)
.+.+.||+|+|||++.+.|+......... +.++-...... ... ..+.....++.. ...+- |....=.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~ 108 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQGE-ITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA 108 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCE-EEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHH
Confidence 58999999999999999999876433322 33332110000 000 000000011100 00000 1111122
Q ss_pred HHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 796 IYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 796 l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
+..++-.+| .|++|||-..-+|+..+..+.+.|.+
T Consensus 109 laral~~~p-~~lllDEP~~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 109 LARILLQDA-PIVLLDEPTVGLDPITERQLLSLIFE 143 (178)
T ss_pred HHHHHhcCC-CEEEEECCcccCCHHHHHHHHHHHHH
Confidence 455666666 79999999865899999999999974
No 377
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=91.49 E-value=0.52 Score=55.00 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=21.7
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+++.|.+|||||.||-.|+..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 68999999999999999999987
No 378
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.45 E-value=0.61 Score=48.58 Aligned_cols=101 Identities=20% Similarity=0.255 Sum_probs=54.7
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccc-----------cchhhhHH
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLR-----------GKVLVDYI 796 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~-----------g~~~~~~l 796 (1093)
.+.+.||+|+|||++.+.|+......... +.++-........ ......-.|+..+..+. |....=.+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~-~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~l 107 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGR-VRLDGADISQWDP-NELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGL 107 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCe-EEECCEEcccCCH-HHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHH
Confidence 58999999999999999999865332222 3333211100000 00000000111111100 11111224
Q ss_pred HHHHHhCCceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 797 YQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 797 ~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
..++-.+| .++++||--.-+|+..+..|.++|..
T Consensus 108 a~al~~~p-~~lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 108 ARALYGNP-RILVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred HHHHhcCC-CEEEEECCccccCHHHHHHHHHHHHH
Confidence 55555555 69999999865899999999988863
No 379
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.43 E-value=0.47 Score=50.73 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++++||.|+|||++.+.|+...
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHH
Confidence 58999999999999999999544
No 380
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=91.41 E-value=0.48 Score=58.78 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=63.4
Q ss_pred HHHhhcccccccc-CCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH
Q 001355 976 EDFFDQTDAIAVF-QPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENVVLRSFY 1054 (1093)
Q Consensus 976 ~efl~rId~~VvF-~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~vl~~~l~ 1054 (1093)
.+|.+.+|..+.| .-++-+|. +-+.+.++.+.+-++.. .+++++-+++++..+ -+++|.|++|+...-.-.|.
T Consensus 387 ~~~~~~~~~~~~l~~~~~~RD~-~aV~kt~SgllKLl~P~---~~~~~ee~e~~l~~A--le~RrrVkeQl~~i~~~ef~ 460 (675)
T TIGR02653 387 RSFADAIDRFFKLGNNLNQRDV-IAVRKTVSGLLKLLYPD---GEYTKDDVRECLTYA--MEGRRRVKEQLKKLGGFEFF 460 (675)
T ss_pred hhHHHHHHhhEecCCCCchhhH-HHHHHHHHHHHHHhCCC---CCCCHHHHHHHHHHH--HHHHHHHHHHHHhcCCceec
Confidence 4577778888888 45555553 34456666666555555 468888888888543 34788899999986655788
Q ss_pred HHHhhcCCCCCeEEEEEeec
Q 001355 1055 EVRRKHHFTAGSVVKLVAHE 1074 (1093)
Q Consensus 1055 e~~~~~~~~~~~~VkLv~~~ 1074 (1093)
.+...|-......-+-|.+.
T Consensus 461 ~~~fsy~~~~~~~e~~v~~p 480 (675)
T TIGR02653 461 DVNFSYIDNESLEEFFVSVP 480 (675)
T ss_pred cceeeeEEcCCCcEEEEecC
Confidence 88888854445666677655
No 381
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.37 E-value=0.22 Score=51.49 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=25.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
.++|.|.+|+|||++|+.||+.+ +-+|+..|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l---g~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL---GYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEcc
Confidence 48899999999999999999987 33454433
No 382
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.26 E-value=1.1 Score=50.98 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
.++...+.+.+.+.|....+-.++.++.......-. -....+.|+|.+++|||.+++..+ .++|....++
T Consensus 155 tle~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~l~------~~~~~~hl~G~Ss~GKTt~~~~a~-Sv~G~p~~l~--- 224 (286)
T PF06048_consen 155 TLEEWQEMVAALAKGNPRLMLALCAAFAAPLLSLLG------VEGFGFHLYGQSSSGKTTALQLAA-SVWGNPDGLI--- 224 (286)
T ss_pred CHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHhC------CCceEEEEEeCCCCCHHHHHHHhh-hhCcCchhhh---
Confidence 445555555566667666555554444433321111 123578999999999998887665 6778765211
Q ss_pred cCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCC
Q 001355 762 VSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTG 832 (1093)
Q Consensus 762 ~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~G 832 (1093)
..+. + +. ..|........+.+++|||+.. +++.-...+.-.|-+|
T Consensus 225 -~sw~---------------~--------T~-n~le~~a~~~nd~~l~lDE~~~-~~~~~~~~~iY~l~nG 269 (286)
T PF06048_consen 225 -RSWN---------------S--------TD-NGLERTAAAHNDLPLVLDELSQ-ADPKDVGSIIYMLANG 269 (286)
T ss_pred -hcch---------------h--------hH-HHHHHHHHHcCCcceEehhccc-cchhHHHHHHHHHhCC
Confidence 0000 0 11 1233334445567999999999 8887656555555554
No 383
>COG1485 Predicted ATPase [General function prediction only]
Probab=91.15 E-value=0.56 Score=54.18 Aligned_cols=149 Identities=15% Similarity=0.122 Sum_probs=76.9
Q ss_pred HHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCC--CCC--------CCCCCeEEEeeCCCCChHHHHHHHHHHHhccCC
Q 001355 685 TLRIALAEKVGWQDEAICTISQAVSRWRIGNGRD--VGS--------NSKRGIWLAFLGPDKVGKKKIASALAEIVFGNK 754 (1093)
Q Consensus 685 ~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~--~~~--------~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~ 754 (1093)
...+.+...-+..|.+-..++.++.++......+ .++ .....--+.|+|+-|.|||.|--..-+.+-+..
T Consensus 14 ~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~ 93 (367)
T COG1485 14 RYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGER 93 (367)
T ss_pred HHHHhcccCCCCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccc
Confidence 3334444444555666666666666664311110 011 011223489999999999999887777775543
Q ss_pred CceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccc--ccCHHHHHHHhhhhcCC
Q 001355 755 GKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDK--AADPIVQSSLTKAISTG 832 (1093)
Q Consensus 755 ~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDk--iad~~vq~~Ll~aLe~G 832 (1093)
+.-+++.--...-+.+ + ..+.|.. +.+..+...+.. ...||.|||++= |+|.-+...|+.+|=.
T Consensus 94 k~R~HFh~FM~~vH~~---l---~~l~g~~------dpl~~iA~~~~~-~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~- 159 (367)
T COG1485 94 KRRLHFHRFMARVHQR---L---HTLQGQT------DPLPPIADELAA-ETRVLCFDEFEVTDIADAMILGRLLEALFA- 159 (367)
T ss_pred cccccHHHHHHHHHHH---H---HHHcCCC------CccHHHHHHHHh-cCCEEEeeeeeecChHHHHHHHHHHHHHHH-
Confidence 3222211000000000 0 1122221 123344444433 346999999864 3555566666655521
Q ss_pred eEecCCCeEeecCCcEEEEecCCCCCC
Q 001355 833 KFTDSYGRDVSISGMIFVATSTILKGK 859 (1093)
Q Consensus 833 r~~d~~G~~V~l~naI~IlTSN~~~~~ 859 (1093)
+++++|+|||..+++
T Consensus 160 ------------~GV~lvaTSN~~P~~ 174 (367)
T COG1485 160 ------------RGVVLVATSNTAPDN 174 (367)
T ss_pred ------------CCcEEEEeCCCChHH
Confidence 246689999986543
No 384
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=91.13 E-value=0.22 Score=55.14 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=26.1
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
++|+|.+|+|||++|+.|++.+......++.++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~ 34 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILG 34 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence 789999999999999999998754334445554
No 385
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=91.13 E-value=1.7 Score=50.49 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=28.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCce--EEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKL--IHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~f--v~id~s 763 (1093)
..+-|.|++|+|||+++..|...+-..+.++ +.+|.+
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~ 95 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS 95 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 5799999999999999999988875444444 444444
No 386
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.13 E-value=0.29 Score=50.73 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=30.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE 765 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~ 765 (1093)
.++|.|++|+|||.+++.++..+.......+.+|+..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 47899999999999999999877655556677777653
No 387
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.13 E-value=0.72 Score=47.93 Aligned_cols=103 Identities=18% Similarity=0.237 Sum_probs=55.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccC--C-CCcc---ccCCCcccccc-c--cc-cchhhhHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVS--Q-PNSI---FDCQNIDFCDC-K--LR-GKVLVDYI 796 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~--~-~~si---~~~~~l~G~~~-g--~~-g~~~~~~l 796 (1093)
-.+.+.||+|+|||++.+.|+..+...... +.++........ . ...+ ...+.++.... . +- |....=.+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~l 107 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGE-ILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAI 107 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCE-EEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHH
Confidence 368999999999999999999876433222 333321100000 0 0000 00001110000 0 00 11111124
Q ss_pred HHHHHhCCceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 797 YQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 797 ~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
..++-..| .+++|||-..-+|+..+..|.++|.+
T Consensus 108 a~al~~~p-~llllDEP~~gLD~~~~~~l~~~l~~ 141 (171)
T cd03228 108 ARALLRDP-PILILDEATSALDPETEALILEALRA 141 (171)
T ss_pred HHHHhcCC-CEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 55565555 79999998865899999999999874
No 388
>PRK07667 uridine kinase; Provisional
Probab=91.07 E-value=0.46 Score=50.59 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=29.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
..+.+.|++|+|||++|+.|++.+-....+...+++..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 57899999999999999999998844334444455444
No 389
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.04 E-value=0.4 Score=48.40 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 699 EAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 699 eai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+....++..+.++.. .+..++|.|+.|+|||++++.+++.+
T Consensus 6 ~~t~~l~~~l~~~l~-----------~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLD-----------FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCC-----------CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344556666654421 12369999999999999999999987
No 390
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.99 E-value=0.66 Score=50.72 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=23.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGN 753 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs 753 (1093)
..+.|.||+|+|||++++.|+..+...
T Consensus 34 ~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 34 TIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 578999999999999999999888543
No 391
>PTZ00088 adenylate kinase 1; Provisional
Probab=90.95 E-value=0.26 Score=54.23 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=27.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.-++|.||+|+||+++|+.||+.+ .+.+++++.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~-----g~~~is~gd 39 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKE-----NLKHINMGN 39 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCcEEECCh
Confidence 458999999999999999999987 356677665
No 392
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=90.94 E-value=0.18 Score=52.50 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=25.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
.+++.|++|+|||++|+.|++.+ .+.+++++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~-----g~~~~~~g 35 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY-----GFTHLSTG 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHH
Confidence 58899999999999999999876 24556654
No 393
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.94 E-value=0.98 Score=53.21 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.0
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+.+++|.||+|+|||+++..||...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999764
No 394
>PRK00279 adk adenylate kinase; Reviewed
Probab=90.82 E-value=0.24 Score=53.56 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=26.3
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
++++|++|+|||++|+.||+.+ .+.+++++.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~-----~~~~is~~d 33 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY-----GIPHISTGD 33 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----CCcEEECCc
Confidence 8899999999999999999887 356677654
No 395
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=90.82 E-value=0.3 Score=50.05 Aligned_cols=46 Identities=26% Similarity=0.231 Sum_probs=33.6
Q ss_pred CccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 695 GWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 695 iGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
.+|.+++..|...+... . ....++|.+|+|+|||.++-.++..++.
T Consensus 6 ~~Q~~ai~~i~~~~~~~------~------~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 6 PYQQEAIARIINSLENK------K------EERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHHHHHHTT------S------GCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc------C------CCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 46788888777776644 0 0125899999999999999976666654
No 396
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.79 E-value=0.28 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+.+.|++|+|||++++.|++.+
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999987
No 397
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.79 E-value=0.65 Score=55.68 Aligned_cols=162 Identities=15% Similarity=0.099 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHhcccCccH-HHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhc--cCCC
Q 001355 679 DPRDYKTLRIALAEKVGWQD-EAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVF--GNKG 755 (1093)
Q Consensus 679 d~e~lk~L~~~L~e~ViGQd-eai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lf--gs~~ 755 (1093)
+.+-...|.+.+.+.....+ .+...+...+.......... . . .....++|.||+|+|||+++..||..+. ....
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-~-~-~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~ 252 (424)
T PRK05703 176 SPEIAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVRVED-I-L-KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKK 252 (424)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCccccc-c-c-cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 34445566666655543333 14444555544332111000 0 1 1123789999999999999988886553 3334
Q ss_pred ceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHh-CCceEEEEcccccc-cCHHHHHHHhhhhcCCe
Q 001355 756 KLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS-KPYSVVFLEDLDKA-ADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 756 ~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~-~p~~VI~LDEVDki-ad~~vq~~Ll~aLe~Gr 833 (1093)
....+++..|..... ..+.......|.+. +...+ .+.+...+.. ..+.+||||-.... .+......|.++++...
T Consensus 253 ~V~li~~D~~r~~a~-eqL~~~a~~~~vp~-~~~~~-~~~l~~~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~ 329 (424)
T PRK05703 253 KVALITLDTYRIGAV-EQLKTYAKIMGIPV-EVVYD-PKELAKALEQLRDCDVILIDTAGRSQRDKRLIEELKALIEFSG 329 (424)
T ss_pred eEEEEECCccHHHHH-HHHHHHHHHhCCce-EccCC-HHhHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccC
Confidence 555566655321000 00000000111110 00011 1233333332 34679999976540 34555566777776210
Q ss_pred EecCCCeEeecCCcEEEEecCC
Q 001355 834 FTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 834 ~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.. -..++|++++.
T Consensus 330 ------~~---~~~~LVl~a~~ 342 (424)
T PRK05703 330 ------EP---IDVYLVLSATT 342 (424)
T ss_pred ------CC---CeEEEEEECCC
Confidence 01 24567787775
No 398
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.56 E-value=0.29 Score=52.60 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.7
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 725 RGIWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 725 ~~~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
.+..+.+.||+|+|||+++++|+..+-
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346799999999999999999998763
No 399
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.56 E-value=0.75 Score=48.60 Aligned_cols=91 Identities=14% Similarity=0.103 Sum_probs=54.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
-.+.+.||+|+|||++.+.|+..+...... |.++-.... .. ........ |....=.+..++-.+| .
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~-~~--------~q~~~LSg---Gq~qrv~laral~~~p-~ 91 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDN-DEWDGITPV-YK--------PQYIDLSG---GELQRVAIAAALLRNA-T 91 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcE-EEECCEEEE-EE--------cccCCCCH---HHHHHHHHHHHHhcCC-C
Confidence 368999999999999999999876433322 333321000 00 00000000 1111123555666666 7
Q ss_pred EEEEcccccccCHHHHHHHhhhhcC
Q 001355 807 VVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 807 VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
+++|||-..-+|+..+..+.+.|.+
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRR 116 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999865899988888888863
No 400
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=90.50 E-value=0.28 Score=51.31 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=25.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
.++|.|++|+|||++++.||+.+ .-+|+..|
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l---~~~~vd~D 36 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL---NMEFYDSD 36 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc---CCcEEECC
Confidence 58999999999999999999986 34444443
No 401
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.44 E-value=0.86 Score=51.66 Aligned_cols=98 Identities=13% Similarity=0.204 Sum_probs=56.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccC--CCCccccCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVS--QPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~--~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
-+|.+||+|+|||+.--++-..+-.. .+.-.+.+-..-++. ...++. ...+.|.-..++...|..++++.|
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~-~~~HIlTIEDPIE~vh~skkslI-----~QREvG~dT~sF~~aLraALReDP- 199 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKH-KAKHILTIEDPIEYVHESKKSLI-----NQREVGRDTLSFANALRAALREDP- 199 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhcc-CCcceEEecCchHhhhcchHhhh-----hHHHhcccHHHHHHHHHHHhhcCC-
Confidence 58999999999987555554444221 121112222211110 001110 111122122356678888999988
Q ss_pred eEEEEcccccccCHHHHHHHhhhhcCCeEe
Q 001355 806 SVVFLEDLDKAADPIVQSSLTKAISTGKFT 835 (1093)
Q Consensus 806 ~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~ 835 (1093)
.|||+-|+- |.+....-+.+-|+|.+.
T Consensus 200 DVIlvGEmR---D~ETi~~ALtAAETGHLV 226 (353)
T COG2805 200 DVILVGEMR---DLETIRLALTAAETGHLV 226 (353)
T ss_pred CEEEEeccc---cHHHHHHHHHHHhcCCEE
Confidence 688888854 478888889999999753
No 402
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=90.42 E-value=0.22 Score=53.62 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=25.6
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+++.||+|+||+++|+.||+.+ .+.+++++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~-----g~~~is~gd 32 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY-----GLPHISTGD 32 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCCeeehhH
Confidence 7899999999999999999876 356666654
No 403
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.38 E-value=0.38 Score=51.44 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=31.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
..++++||+|+|||.++..++..........++++...
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 57899999999999999998887766666778888753
No 404
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=90.33 E-value=0.24 Score=51.60 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=22.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
++++.||+|+|||++++.|+..+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998864
No 405
>PRK02496 adk adenylate kinase; Provisional
Probab=90.27 E-value=0.3 Score=51.29 Aligned_cols=23 Identities=48% Similarity=0.625 Sum_probs=21.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.||+|+|||++|+.||+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 406
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.23 E-value=0.4 Score=56.45 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=50.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccc-cc--cccchhhhHHHHHHHhC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCD-CK--LRGKVLVDYIYQEFRSK 803 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~-~g--~~g~~~~~~l~eal~~~ 803 (1093)
..+++.|++|+|||.++..++..+.....+.++++....... +......+|.. .. +......+.+.+.+.+.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~q-----i~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQ-----IKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHH-----HHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 478999999999999999998777555456667765431100 00000001110 00 11123346667777766
Q ss_pred CceEEEEccccc
Q 001355 804 PYSVVFLEDLDK 815 (1093)
Q Consensus 804 p~~VI~LDEVDk 815 (1093)
...+|+||+|..
T Consensus 158 ~~~lVVIDSIq~ 169 (372)
T cd01121 158 KPDLVIIDSIQT 169 (372)
T ss_pred CCcEEEEcchHH
Confidence 678999999976
No 407
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.19 E-value=0.87 Score=47.41 Aligned_cols=103 Identities=16% Similarity=0.224 Sum_probs=55.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcccc-CC-CCcc---ccCCCcccc-cc-c---cc-cchhhhH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRV-SQ-PNSI---FDCQNIDFC-DC-K---LR-GKVLVDY 795 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~-~~-~~si---~~~~~l~G~-~~-g---~~-g~~~~~~ 795 (1093)
-.+.+.||+|+|||++.+.|+......... +.++-...... .. ...+ .....++.. .. . +. |....=.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~ 105 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGE-IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLA 105 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHH
Confidence 368999999999999999999765322222 33332111000 00 0000 000111110 00 0 00 1111112
Q ss_pred HHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 796 IYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 796 l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
+..++-.+| .|+++||-..-+|+..+..+.++|.+
T Consensus 106 laral~~~p-~illlDEPt~~LD~~~~~~l~~~l~~ 140 (173)
T cd03230 106 LAQALLHDP-ELLILDEPTSGLDPESRREFWELLRE 140 (173)
T ss_pred HHHHHHcCC-CEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 455555555 79999999876899999999999974
No 408
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.16 E-value=0.31 Score=51.72 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.7
Q ss_pred EEeeCCCCChHHHHHHHHHHHh
Q 001355 729 LAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+.+.||+|+|||++++.|+..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 409
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=90.07 E-value=0.44 Score=60.89 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=50.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCC--CceEEeecCCcc-----cc--CCCCccccCCCccccccccccchhhhHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNK--GKLIHVDVSSEQ-----RV--SQPNSIFDCQNIDFCDCKLRGKVLVDYIYQ 798 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~--~~fv~id~s~~~-----~~--~~~~si~~~~~l~G~~~g~~g~~~~~~l~e 798 (1093)
.+++.|++|||||+++++|.+.+-... ..++...-+... .. .....+ ..+++...+. . ....
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Ti---h~lL~~~~~~----~--~~~~ 410 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTI---HRLLGYGPDT----F--RHNH 410 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccH---HHHhhccCCc----c--chhh
Confidence 589999999999999999988764333 222222111100 00 000000 0111111110 0 0000
Q ss_pred HHHhCCceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 799 EFRSKPYSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 799 al~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
.-...+..+|++||+-. ++......|++++..
T Consensus 411 ~~~~~~~~llIvDEaSM-vd~~~~~~Ll~~~~~ 442 (720)
T TIGR01448 411 LEDPIDCDLLIVDESSM-MDTWLALSLLAALPD 442 (720)
T ss_pred hhccccCCEEEEecccc-CCHHHHHHHHHhCCC
Confidence 00012456999999999 999999999887754
No 410
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=90.02 E-value=1.1 Score=52.34 Aligned_cols=95 Identities=20% Similarity=0.293 Sum_probs=57.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC-CccccCCCCccccCCCcccc---ccccccchhhhHHHHHHHhC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS-SEQRVSQPNSIFDCQNIDFC---DCKLRGKVLVDYIYQEFRSK 803 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s-~~~~~~~~~si~~~~~l~G~---~~g~~g~~~~~~l~eal~~~ 803 (1093)
.+++.|++|+|||++.++|...+... ...+.+.=. +..- ...+.+ .+... ..|--+.++.+.+..+++.+
T Consensus 180 ~ili~G~tGsGKTTll~al~~~i~~~-~riv~iEd~~El~~-~~~~~~----~l~~r~~~~~g~~~~t~~~ll~~aLR~~ 253 (340)
T TIGR03819 180 AFLISGGTGSGKTTLLSALLALVAPD-ERIVLVEDAAELRP-DHPHVV----RLEARPANVEGAGAVTLTDLVRQALRMR 253 (340)
T ss_pred eEEEECCCCCCHHHHHHHHHccCCCC-CcEEEECCcceecC-CCCCee----eEEeccccccCcCccCHHHHHHHHhccC
Confidence 69999999999999999998877543 334444311 1110 000100 01100 01111235567788889888
Q ss_pred CceEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 804 PYSVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 804 p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
|. +|++-||-- +++. .+++++.+|.
T Consensus 254 PD-~IivGEiRg---~Ea~-~~l~a~~tGh 278 (340)
T TIGR03819 254 PD-RIVVGEVRG---AEVV-DLLAALNTGH 278 (340)
T ss_pred CC-eEEEeCcCc---HHHH-HHHHHHHcCC
Confidence 84 788899876 4564 4588998874
No 411
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=89.95 E-value=0.77 Score=49.06 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEEeeCCCCChHHHHHHHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
.++|+||.|+|||++.+.|+.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 589999999999999999883
No 412
>PRK13946 shikimate kinase; Provisional
Probab=89.90 E-value=0.27 Score=51.83 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=25.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
.++|.|.+|+|||++++.||+.+ +-+|+..|
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~L---g~~~id~D 42 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATML---GLPFLDAD 42 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCCeECcC
Confidence 69999999999999999999988 34454433
No 413
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=89.88 E-value=0.36 Score=52.32 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=25.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
.+++.||||+|||.+|-+||+.. +.++|..|--
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~---g~pvI~~Dri 35 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKT---GAPVISLDRI 35 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH-----EEEEE-SG
T ss_pred EEEEECCCCCChhHHHHHHHHHh---CCCEEEecce
Confidence 57999999999999999999988 5677777743
No 414
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=89.82 E-value=0.85 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=18.2
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
.+++.||.|||||++|-+.|..+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~v 44 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALELV 44 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Confidence 489999999999999988775443
No 415
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=89.73 E-value=0.88 Score=48.08 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.0
Q ss_pred EEeeCCCCChHHHHHHHHHHHh
Q 001355 729 LAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
++++||.|.|||.+.|.++-..
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~ 23 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIV 23 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999888433
No 416
>PF13245 AAA_19: Part of AAA domain
Probab=89.70 E-value=0.47 Score=43.14 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=17.0
Q ss_pred EEEeeCCCCChHHH-HHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKK-IASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~-lAraLA~~l 750 (1093)
.+++.||+|+|||. ++..+++.+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 46779999999995 555555555
No 417
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=89.59 E-value=0.37 Score=55.31 Aligned_cols=33 Identities=30% Similarity=0.533 Sum_probs=26.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
..+++.||+|+|||.+|..||+.+ +..+|..|.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~---~~~iis~Ds 37 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRL---NGEIISADS 37 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhC---CCcEEeccc
Confidence 368999999999999999999987 334555553
No 418
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=89.58 E-value=0.99 Score=48.49 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+++++||+|+|||++.+.|+-.+
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 78999999999999999998655
No 419
>PLN02165 adenylate isopentenyltransferase
Probab=89.51 E-value=0.34 Score=55.97 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.||+|+|||.+|..||+.+
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHc
Confidence 68999999999999999999987
No 420
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=89.45 E-value=1.7 Score=54.59 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=23.6
Q ss_pred CceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 804 PYSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 804 p~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
+..||++||+-. .|......|++++..
T Consensus 265 ~~dvlIvDEaSM-vd~~lm~~ll~al~~ 291 (615)
T PRK10875 265 HLDVLVVDEASM-VDLPMMARLIDALPP 291 (615)
T ss_pred CCCeEEEChHhc-ccHHHHHHHHHhccc
Confidence 346999999999 999999999999864
No 421
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=89.45 E-value=1.3 Score=45.93 Aligned_cols=101 Identities=23% Similarity=0.206 Sum_probs=55.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC---c--ccc-CCCCccccCCCcccccccccc-chhhhHHHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS---E--QRV-SQPNSIFDCQNIDFCDCKLRG-KVLVDYIYQEF 800 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~---~--~~~-~~~~si~~~~~l~G~~~g~~g-~~~~~~l~eal 800 (1093)
.+.+.||+|+|||++.+.|+..+-..... +.++-.. | ++. ....++.+.-.+ +....+.| ....=.+..++
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~~~~~i~~~~q~~~~~~~tv~~nl~~-~~~~~LS~G~~~rv~laral 106 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGR-IGMPEGEDLLFLPQRPYLPLGTLREQLIY-PWDDVLSGGEQQRLAFARLL 106 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCCceEEEECCCCccccccHHHHhhc-cCCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999765432222 2232110 0 000 000011000000 01111111 11112245556
Q ss_pred HhCCceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 801 RSKPYSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 801 ~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
-.+| .++++||-..-+|+..+..|.++|.+
T Consensus 107 ~~~p-~~lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 107 LHKP-KFVFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred HcCC-CEEEEECCccccCHHHHHHHHHHHHH
Confidence 5555 79999999865899999999999974
No 422
>PLN02674 adenylate kinase
Probab=89.40 E-value=0.6 Score=51.89 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=27.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.++|.||||+||+++|+.||+.+ .+.+++++.
T Consensus 33 ~i~l~G~PGsGKgT~a~~La~~~-----~~~his~Gd 64 (244)
T PLN02674 33 RLILIGPPGSGKGTQSPIIKDEY-----CLCHLATGD 64 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-----CCcEEchhH
Confidence 48899999999999999999876 467777765
No 423
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.39 E-value=0.93 Score=46.26 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=54.7
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccc-cchhhhHHHHHHHhCCce
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLR-GKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~-g~~~~~~l~eal~~~p~~ 806 (1093)
.+.+.|++|+|||++.++|+..+..... -+.++-........ .. ....+++...+. |....=.+..++-..| .
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~~G-~i~~~~~~~~~~~~-~~---~~~~i~~~~qlS~G~~~r~~l~~~l~~~~-~ 100 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPTSG-EILIDGKDIAKLPL-EE---LRRRIGYVPQLSGGQRQRVALARALLLNP-D 100 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEcccCCH-HH---HHhceEEEeeCCHHHHHHHHHHHHHhcCC-C
Confidence 5789999999999999999876532221 23333221100000 00 001111111111 1111122455555554 7
Q ss_pred EEEEcccccccCHHHHHHHhhhhcC
Q 001355 807 VVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 807 VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
++++||...-+|......|.++|..
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 9999999865899999999888873
No 424
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=89.31 E-value=0.28 Score=49.82 Aligned_cols=29 Identities=38% Similarity=0.566 Sum_probs=25.1
Q ss_pred eeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 731 FLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 731 f~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+.||||+||+++|+.||+.. .|++|+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~-----~~~~is~~~ 29 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY-----GLVHISVGD 29 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH-----TSEEEEHHH
T ss_pred CcCCCCCChHHHHHHHHHhc-----CcceechHH
Confidence 57999999999999999986 468888765
No 425
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=89.29 E-value=0.36 Score=50.63 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=25.7
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
.+++.|++|+|||.+|..++..+ ..+.+++.-+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCC
Confidence 58999999999999999999765 3345555543
No 426
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=89.27 E-value=0.41 Score=50.47 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=27.4
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+.+.|++|+|||++|+.|++.+-....+...+.+..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Dd 37 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDD 37 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhh
Confidence 689999999999999999998743333445565554
No 427
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=89.18 E-value=1.4 Score=45.40 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=53.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEee---cCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhC-
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD---VSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSK- 803 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id---~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~- 803 (1093)
..++.||.|+|||.+.+++.-.++.......+-+ .+.........-+. ...+... |....-.+..++...
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~---~~~~lS~---G~~~~~~la~~L~~~~ 96 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIF---TRLQLSG---GEKELSALALILALAS 96 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEeh---heeeccc---cHHHHHHHHHHHHhcC
Confidence 6899999999999999998876655442222200 00000000000000 0001111 122223455555542
Q ss_pred --CceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 804 --PYSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 804 --p~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
+..+++|||+..-.|+.-...+.+++.+
T Consensus 97 ~~~~~llllDEp~~gld~~~~~~l~~~l~~ 126 (162)
T cd03227 97 LKPRPLYILDEIDRGLDPRDGQALAEAILE 126 (162)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 4579999999885788877777777653
No 428
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=89.13 E-value=0.48 Score=50.82 Aligned_cols=115 Identities=21% Similarity=0.232 Sum_probs=54.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCc--eEEeecCCccccCCCCccccCCCcccccc--ccccchhhhHH---HHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGK--LIHVDVSSEQRVSQPNSIFDCQNIDFCDC--KLRGKVLVDYI---YQE 799 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~--fv~id~s~~~~~~~~~si~~~~~l~G~~~--g~~g~~~~~~l---~ea 799 (1093)
..++|.||+|+|||+.+--||..+-..+.. +++.|......... +.......|-+. -+...+-...+ .+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQ---L~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQ---LKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHH---HHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHH---HHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 379999999999998777666544333333 45555332110000 000001111110 00011111222 233
Q ss_pred HHhCCceEEEEcccccccC--HHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 800 FRSKPYSVVFLEDLDKAAD--PIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 800 l~~~p~~VI~LDEVDkiad--~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.+.+...+||||=..+ .+ ......|.++++.- .-...++|+.++.
T Consensus 79 ~~~~~~D~vlIDT~Gr-~~~d~~~~~el~~~~~~~----------~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGR-SPRDEELLEELKKLLEAL----------NPDEVHLVLSATM 125 (196)
T ss_dssp HHHTTSSEEEEEE-SS-SSTHHHHHHHHHHHHHHH----------SSSEEEEEEEGGG
T ss_pred HhhcCCCEEEEecCCc-chhhHHHHHHHHHHhhhc----------CCccceEEEeccc
Confidence 3445667999999876 54 34445555554421 1124567887775
No 429
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=89.09 E-value=0.28 Score=63.15 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=28.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
|+++.||+|+|||..|...+..+ ...++.+|.+.
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~---g~~v~E~Nas~ 392 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKEL---GFKVVEKNASD 392 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhc---ccceeecCccc
Confidence 78999999999999999999877 44667777664
No 430
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=89.07 E-value=0.93 Score=51.79 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=23.4
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+..+++.|++|+|||.+|..||+.+
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999988
No 431
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=89.06 E-value=1.7 Score=53.11 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=79.6
Q ss_pred hhHHHHHHHhhccc------ccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCc
Q 001355 213 ENCRRIGEVLAGRD------EKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRV 283 (1093)
Q Consensus 213 eeirrv~~vL~R~~------~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~ 283 (1093)
++++.+++.|.... .+..++.+|.|.+|.| .++.++.. .++.++.+. .+.|+ ..
T Consensus 65 ~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~-------------~~~~~~~i~--~~~~~--~~ 127 (495)
T TIGR01241 65 EELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE-------------AGVPFFSIS--GSDFV--EM 127 (495)
T ss_pred HHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH-------------cCCCeeecc--HHHHH--HH
Confidence 44666776554200 1234689999999998 36666644 234567766 44442 12
Q ss_pred cHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCc-----chHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHH
Q 001355 284 NVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVS-----TEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYET 357 (1093)
Q Consensus 284 ~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~-----~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~t 357 (1093)
+-++-+.+++++-..++. ..+.||||||++-+...... ....+..++++=..+.. ...+.+-+||| |...+
T Consensus 128 ~~g~~~~~l~~~f~~a~~--~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~a-Tn~~~ 204 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKK--NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAA-TNRPD 204 (495)
T ss_pred HhcccHHHHHHHHHHHHh--cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEe-cCChh
Confidence 334455677777766654 45679999999999764321 12233344333333321 12456999998 35432
Q ss_pred HHhhhhcCCCCCC--CCcce
Q 001355 358 YLKMLAKFPGLDN--DWDLQ 375 (1093)
Q Consensus 358 Y~k~~~~~PslE~--~w~Lq 375 (1093)
.-+|+|-+ +||-+
T Consensus 205 -----~ld~al~r~gRfd~~ 219 (495)
T TIGR01241 205 -----VLDPALLRPGRFDRQ 219 (495)
T ss_pred -----hcCHHHhcCCcceEE
Confidence 45677765 66654
No 432
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=89.03 E-value=0.53 Score=50.15 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=17.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++.||||||||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 58999999999998766666555
No 433
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=89.01 E-value=1.8 Score=49.32 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.5
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 725 RGIWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 725 ~~~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
.+..+.+.||+|+|||++|+.|...+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346788999999999999999988774
No 434
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=88.97 E-value=0.56 Score=50.88 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=30.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
...+++|++|+|||.+|..++........+.+++++.
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 5789999999999999999987665556677778776
No 435
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=88.85 E-value=0.31 Score=52.33 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
-++|+|+||+|||.+|+.||+.+-.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 3799999999999999999999843
No 436
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=88.84 E-value=0.45 Score=49.77 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
.+.|.|++|+|||++++.|++.+-.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998843
No 437
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.80 E-value=1.8 Score=51.17 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=29.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE 765 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~ 765 (1093)
-.++|.||+|+|||+++..||..+.........+++..|
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 479999999999999999999776554445555665543
No 438
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=88.79 E-value=0.57 Score=49.19 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=28.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..+.|.|++|+|||++|+.|+..+.......+.++..
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d 55 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD 55 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh
Confidence 5799999999999999999999886444344555543
No 439
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=88.79 E-value=0.43 Score=49.53 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+-+.||+|+|||++|+.||+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 36789999999999999999988
No 440
>PRK14528 adenylate kinase; Provisional
Probab=88.78 E-value=0.46 Score=50.32 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=25.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.+++.||||+|||++|+.|++.+ | +.+++++.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~-~----~~~is~~~ 34 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL-S----IPQISTGD 34 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C----CCeeeCCH
Confidence 48999999999999999999876 2 34455544
No 441
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=88.66 E-value=1.1 Score=48.43 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++++||.|.|||.+.+.++...
T Consensus 31 ~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 31 FHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999887544
No 442
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=88.57 E-value=0.85 Score=56.72 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=30.4
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHHhcc-CCCceEEeecC
Q 001355 725 RGIWLAFLGPDKVGKKKIASALAEIVFG-NKGKLIHVDVS 763 (1093)
Q Consensus 725 ~~~~LLf~Gp~GvGKT~lAraLA~~lfg-s~~~fv~id~s 763 (1093)
.+..++|+|.+|+|||++|+.|++.+.. ...+++.+|..
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D 430 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD 430 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc
Confidence 3457899999999999999999998854 34445666654
No 443
>PRK13764 ATPase; Provisional
Probab=88.45 E-value=1.6 Score=54.47 Aligned_cols=26 Identities=31% Similarity=0.310 Sum_probs=23.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGN 753 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs 753 (1093)
.++++||+|+|||+++++|++.+...
T Consensus 259 ~ILIsG~TGSGKTTll~AL~~~i~~~ 284 (602)
T PRK13764 259 GILIAGAPGAGKSTFAQALAEFYADM 284 (602)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhC
Confidence 48999999999999999999888543
No 444
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=88.38 E-value=0.44 Score=50.32 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.||+|+|||++++.|+..+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999998865
No 445
>PRK14527 adenylate kinase; Provisional
Probab=88.38 E-value=0.44 Score=50.47 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=22.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.||+|+|||++|+.|++.+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999876
No 446
>PLN02840 tRNA dimethylallyltransferase
Probab=88.36 E-value=0.5 Score=56.30 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=27.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
..+++.||+|+|||.+|..||+.+ +..+|.+|.
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~---~~~iis~Ds 54 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRL---NGEIISADS 54 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHC---CCCeEeccc
Confidence 479999999999999999999988 335666664
No 447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=88.36 E-value=2.2 Score=53.32 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=23.6
Q ss_pred CceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 804 PYSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 804 p~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
+..||++||+-. .+......|++++..
T Consensus 259 ~~dvlIiDEaSM-vd~~l~~~ll~al~~ 285 (586)
T TIGR01447 259 PLDVLVVDEASM-VDLPLMAKLLKALPP 285 (586)
T ss_pred cccEEEEccccc-CCHHHHHHHHHhcCC
Confidence 456999999999 999999999998864
No 448
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=88.34 E-value=0.82 Score=49.40 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.5
Q ss_pred EEeeCCCCChHHHHHHHHHHH
Q 001355 729 LAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
+++.|++|+|||++.+.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999988876
No 449
>PRK04040 adenylate kinase; Provisional
Probab=88.32 E-value=0.55 Score=49.99 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=21.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++++|++|+|||++++.|++.+
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999987
No 450
>PHA02624 large T antigen; Provisional
Probab=88.26 E-value=1.1 Score=55.57 Aligned_cols=33 Identities=30% Similarity=0.559 Sum_probs=27.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
.++|+||+|+|||+++.+|.+.+-|. .+.+++.
T Consensus 433 ~il~~GPpnTGKTtf~~sLl~~L~G~---vlsVNsP 465 (647)
T PHA02624 433 YWLFKGPVNSGKTTLAAALLDLCGGK---SLNVNCP 465 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe---EEEeeCC
Confidence 79999999999999999999999554 3445533
No 451
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=88.26 E-value=3.1 Score=48.99 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=73.2
Q ss_pred CCchhhHHHHHHHhhcc-cccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeec-----------
Q 001355 209 DDVDENCRRIGEVLAGR-DEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEY----------- 273 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~-~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~----------- 273 (1093)
.+|++|++.+...|..- ++.+..|.+|.|.+|.| .++.++..+.+. + .+..++.++-
T Consensus 33 ~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~--~------~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 33 PHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI--A------VKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh--c------CCcEEEEEECCcCCCHHHHHH
Confidence 58999999999998531 11344789999999998 478888776542 1 2345555541
Q ss_pred hhhhhhcC-Cc-cHH-HHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEEE
Q 001355 274 EINEFVGG-RV-NVE-MMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLIG 350 (1093)
Q Consensus 274 e~~~~~a~-~~-~r~-e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwliG 350 (1093)
++..-+.+ .. .++ .+++-+..+.+.++.. +.++||+|||++++..... .. .+..+.+++....+.++-+|+
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~viviDE~d~l~~~~~-~~----~l~~l~~~~~~~~~~~v~vI~ 178 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDER-DRVLIVALDDINYLFEKEG-ND----VLYSLLRAHEEYPGARIGVIG 178 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCHhHhhccCC-ch----HHHHHHHhhhccCCCeEEEEE
Confidence 01111111 00 111 1333344444444443 6789999999999983222 11 222344444312233787888
Q ss_pred ec
Q 001355 351 AA 352 (1093)
Q Consensus 351 ~a 352 (1093)
++
T Consensus 179 i~ 180 (394)
T PRK00411 179 IS 180 (394)
T ss_pred EE
Confidence 74
No 452
>PRK05439 pantothenate kinase; Provisional
Probab=88.25 E-value=1.9 Score=49.56 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.3
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 725 RGIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 725 ~~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
....+.+.|++|+|||++|+.|++.+
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999876
No 453
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.24 E-value=1.5 Score=45.82 Aligned_cols=103 Identities=20% Similarity=0.299 Sum_probs=55.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccC----C-CCcc---ccCCCcccc-c----cc--cc-cc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVS----Q-PNSI---FDCQNIDFC-D----CK--LR-GK 790 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~----~-~~si---~~~~~l~G~-~----~g--~~-g~ 790 (1093)
-.+.+.||+|+|||++.+.|+..+...... |.++-....... . ...+ ...+.++.. . .. +. |.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~ 105 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGS-ILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQ 105 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHHH
Confidence 368899999999999999999765322222 333321110000 0 0000 000111100 0 00 00 11
Q ss_pred hhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 791 VLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 791 ~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
...=.+..++-.+| .++++||-..-+|+..+..|.++|..
T Consensus 106 ~qr~~la~al~~~p-~llilDEP~~~LD~~~~~~l~~~l~~ 145 (178)
T cd03229 106 QQRVALARALAMDP-DVLLLDEPTSALDPITRREVRALLKS 145 (178)
T ss_pred HHHHHHHHHHHCCC-CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11112455565665 79999999875899999999998874
No 454
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=88.21 E-value=2 Score=55.46 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=19.1
Q ss_pred EEEeeCCCCChHHH-HHHHHHHHhccC
Q 001355 728 WLAFLGPDKVGKKK-IASALAEIVFGN 753 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~-lAraLA~~lfgs 753 (1093)
.+++.||||+|||+ +-+.|.+..++.
T Consensus 67 vvii~getGsGKTTqlP~~lle~g~~~ 93 (845)
T COG1643 67 VVIIVGETGSGKTTQLPQFLLEEGLGI 93 (845)
T ss_pred EEEEeCCCCCChHHHHHHHHHhhhccc
Confidence 59999999999987 445555555543
No 455
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=88.20 E-value=0.5 Score=54.01 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=25.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
.+++.||||+|||.+|-.||+. ++ ..|+.|-
T Consensus 6 ii~I~GpTasGKS~LAl~LA~~-~~---eIIsaDS 36 (300)
T PRK14729 6 IVFIFGPTAVGKSNILFHFPKG-KA---EIINVDS 36 (300)
T ss_pred EEEEECCCccCHHHHHHHHHHh-CC---cEEeccH
Confidence 6899999999999999999998 43 4555553
No 456
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=88.19 E-value=0.61 Score=53.81 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=48.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCcc-ccCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSI-FDCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si-~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
..++++||+|+|||.+|..++..........+.||.....+......+ .....++-..+. .+......+...++...-
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~-~~eq~l~~~~~li~~~~~ 134 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPD-TGEQALEIAETLVRSGAV 134 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCC-CHHHHHHHHHHHhhccCC
Confidence 478999999999999998776655555666777876531100000000 000111111111 122333444444555556
Q ss_pred eEEEEccccc
Q 001355 806 SVVFLEDLDK 815 (1093)
Q Consensus 806 ~VI~LDEVDk 815 (1093)
.+|+||-|..
T Consensus 135 ~lIVIDSv~a 144 (321)
T TIGR02012 135 DIIVVDSVAA 144 (321)
T ss_pred cEEEEcchhh
Confidence 7999999886
No 457
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=88.18 E-value=0.67 Score=49.95 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=30.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..++++|++|+|||.+|..+|........+.++++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 5789999999999999999998776656677777653
No 458
>PRK00300 gmk guanylate kinase; Provisional
Probab=88.12 E-value=0.43 Score=50.77 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+.|.||+|+|||++++.|+..+
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 469999999999999999999865
No 459
>PRK11823 DNA repair protein RadA; Provisional
Probab=88.06 E-value=0.69 Score=55.87 Aligned_cols=84 Identities=13% Similarity=0.082 Sum_probs=49.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccc---cccccchhhhHHHHHHHhC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCD---CKLRGKVLVDYIYQEFRSK 803 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~---~g~~g~~~~~~l~eal~~~ 803 (1093)
..+++.|++|+|||.++..++..+.....+.++++....... +......+|.+ .-+......+.+.+.+++.
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~q-----i~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQ-----IKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHH-----HHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 478999999999999999998876544556677775431100 00000001110 0011112345666777766
Q ss_pred CceEEEEccccc
Q 001355 804 PYSVVFLEDLDK 815 (1093)
Q Consensus 804 p~~VI~LDEVDk 815 (1093)
...+|+||.+..
T Consensus 156 ~~~lVVIDSIq~ 167 (446)
T PRK11823 156 KPDLVVIDSIQT 167 (446)
T ss_pred CCCEEEEechhh
Confidence 668999999976
No 460
>PRK13975 thymidylate kinase; Provisional
Probab=88.03 E-value=0.47 Score=50.09 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=21.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+.|.|++|+|||++|+.|++.+
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 461
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=87.86 E-value=0.6 Score=48.96 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=43.8
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC-ccccCCCCccccCCCccccccccccchhhhHHHHHHHhC-Cce
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS-EQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSK-PYS 806 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~-~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~-p~~ 806 (1093)
+|++|++|+|||.+|..++.. ...+.+++.-.. ++.... ..+..... ..+.++........+.+.+.+. ...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~-~rI~~H~~--~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMA-ERIARHRK--RRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHH-HHHHHHHH--hCCCCceEeecHHHHHHHHHhcCCCC
Confidence 689999999999999999865 234566665443 111000 00000000 0122232223334566666544 345
Q ss_pred EEEEccccc
Q 001355 807 VVFLEDLDK 815 (1093)
Q Consensus 807 VI~LDEVDk 815 (1093)
+|+||-+.-
T Consensus 76 ~VLIDclt~ 84 (169)
T cd00544 76 VVLIDCLTL 84 (169)
T ss_pred EEEEEcHhH
Confidence 899998753
No 462
>PRK14526 adenylate kinase; Provisional
Probab=87.74 E-value=0.51 Score=51.24 Aligned_cols=31 Identities=35% Similarity=0.610 Sum_probs=25.0
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
++|.||+|+||+++|+.||+.+ .+.+++++.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~-----~~~~is~G~ 33 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL-----NYYHISTGD 33 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----CCceeecCh
Confidence 7899999999999999999876 245555554
No 463
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=87.69 E-value=0.45 Score=50.54 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.4
Q ss_pred EEeeCCCCChHHHHHHHHHHHhc
Q 001355 729 LAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
+.+.||+|+|||++|+.|+..+-
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999884
No 464
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=87.62 E-value=0.55 Score=53.39 Aligned_cols=31 Identities=35% Similarity=0.641 Sum_probs=25.6
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
+++.||+|+|||.+|..||+.+ +..+|.+|-
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~---~~~iis~Ds 32 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKL---NAEIISVDS 32 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhC---CCcEEEech
Confidence 7899999999999999999987 335666654
No 465
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=87.58 E-value=0.71 Score=40.50 Aligned_cols=27 Identities=26% Similarity=0.573 Sum_probs=24.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNK 754 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~ 754 (1093)
..+|+|++|+|||++..+|--.+++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 589999999999999999999998765
No 466
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.36 E-value=4.3 Score=47.19 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=73.8
Q ss_pred CCchhhHHHHHHHhhccc-ccCCCCcEEeccchhh---HHHHHHHHHhcCC-CCCCCccccCcEEEEeec-hh-------
Q 001355 209 DDVDENCRRIGEVLAGRD-EKKGKNPLLVGVCANS---ALKGFVESVNGGK-VGLFPRQIYGLDVVCVEY-EI------- 275 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~~-~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~-~g~vp~~L~~~~v~~l~~-e~------- 275 (1093)
.||++|++.+...|..-- +.+..|.+|.|.+|.| .++.++..+.... ...+| ..++.++- +.
T Consensus 18 ~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~-----~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 18 VHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVR-----VVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCc-----eEEEEEECCCCCCHHHHH
Confidence 589999999999886210 1345789999999998 4777776654311 01111 34444441 00
Q ss_pred ---hhhhc--CC-c-cHH-HHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhc--CCCCCc
Q 001355 276 ---NEFVG--GR-V-NVE-MMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLK--SGNGEK 345 (1093)
Q Consensus 276 ---~~~~a--~~-~-~r~-e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~--~~~~g~ 345 (1093)
..-+. |. . .++ .+++.++.+.+.+... +..+||+|||++.+++... .+..++-++.. ...+..
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vlvIDE~d~L~~~~~------~~L~~l~~~~~~~~~~~~~ 165 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNER-GDSLIIVLDEIDYLVGDDD------DLLYQLSRARSNGDLDNAK 165 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEEECchhhhccCCc------HHHHhHhccccccCCCCCe
Confidence 00011 11 0 011 1233345555555443 6789999999999994322 13335555521 133467
Q ss_pred EEEEEec
Q 001355 346 LWLIGAA 352 (1093)
Q Consensus 346 lwliG~a 352 (1093)
+-+|+++
T Consensus 166 v~lI~i~ 172 (365)
T TIGR02928 166 VGVIGIS 172 (365)
T ss_pred EEEEEEE
Confidence 8999984
No 467
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=87.19 E-value=0.76 Score=49.08 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=28.2
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc
Q 001355 725 RGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE 765 (1093)
Q Consensus 725 ~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~ 765 (1093)
.+..+++.|++|+|||+++..+...+. ...++.||...+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~ 52 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEF 52 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHH
Confidence 346799999999999999999887664 556788887664
No 468
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=87.18 E-value=1.3 Score=49.31 Aligned_cols=99 Identities=12% Similarity=0.128 Sum_probs=57.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccc----hhhhHHHHHHHhC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGK----VLVDYIYQEFRSK 803 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~----~~~~~l~eal~~~ 803 (1093)
.+.++|+-|+|||.+.|++.+.+-++....+.+|-.......-.+.+. ..+-+ ++...-. ..-+.+.+.+.+.
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~--~~l~~-~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIV--ADLES-QPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHH--HHhcc-CccchhHHHHHHHHHHHHHHHHhC
Confidence 689999999999999998888886655555556544321100000000 00111 1110000 1123455555555
Q ss_pred Cc-eEEEEcccccccCHHHHHHHhhhhc
Q 001355 804 PY-SVVFLEDLDKAADPIVQSSLTKAIS 830 (1093)
Q Consensus 804 p~-~VI~LDEVDkiad~~vq~~Ll~aLe 830 (1093)
.+ -++++||.+. +.......|..+.+
T Consensus 130 ~r~v~l~vdEah~-L~~~~le~Lrll~n 156 (269)
T COG3267 130 KRPVVLMVDEAHD-LNDSALEALRLLTN 156 (269)
T ss_pred CCCeEEeehhHhh-hChhHHHHHHHHHh
Confidence 55 5899999999 88877777765554
No 469
>PLN02459 probable adenylate kinase
Probab=87.16 E-value=0.8 Score=51.35 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=27.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
..++|.||||+||+++|+.||+.+ .+.+++++.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~-----~~~~is~gd 62 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLL-----GVPHIATGD 62 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-----CCcEEeCcH
Confidence 357778999999999999999976 467777665
No 470
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=87.13 E-value=2 Score=46.59 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.++|+||.|+|||.+.+.++..
T Consensus 31 ~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 5889999999999999998853
No 471
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=87.11 E-value=0.44 Score=49.59 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.||+|+|||++++.|++..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58999999999999999999865
No 472
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=87.06 E-value=0.77 Score=50.12 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.8
Q ss_pred EEeeCCCCChHHHHHHHHHHHhc
Q 001355 729 LAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
+.+.|++|+|||++|+.|+..+-
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999874
No 473
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=86.99 E-value=0.69 Score=52.91 Aligned_cols=33 Identities=33% Similarity=0.551 Sum_probs=28.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
.++++|||++|||.+|-.||+.+ +...|.+|-.
T Consensus 5 ~i~I~GPTAsGKT~lai~LAk~~---~~eIIs~DSm 37 (308)
T COG0324 5 LIVIAGPTASGKTALAIALAKRL---GGEIISLDSM 37 (308)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc---CCcEEecchh
Confidence 58999999999999999999998 4567777744
No 474
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.93 E-value=2.1 Score=52.04 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.||+|+|||+++..||..+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHH
Confidence 579999999999999999998765
No 475
>PLN02199 shikimate kinase
Probab=86.90 E-value=1.3 Score=50.40 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=24.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIH 759 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~ 759 (1093)
.|+|.|.+|+|||++++.||+.+ +-+|+.
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~L---g~~fID 132 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVL---GYTFFD 132 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEe
Confidence 59999999999999999999987 444543
No 476
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=86.87 E-value=2.7 Score=48.03 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=28.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..+.|.|++|+|||+++..|+..+...+.....+++.
T Consensus 35 ~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 35 HRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4688999999999999999998776554444444444
No 477
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=86.83 E-value=3 Score=51.63 Aligned_cols=29 Identities=38% Similarity=0.507 Sum_probs=23.6
Q ss_pred EEEeeCCCCChHHH-HHHHHHHHhccCCCc
Q 001355 728 WLAFLGPDKVGKKK-IASALAEIVFGNKGK 756 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~-lAraLA~~lfgs~~~ 756 (1093)
.+++.|++|+|||+ +-+.|++.-|.....
T Consensus 68 vlIviGeTGsGKSTQipQyL~eaG~~~~g~ 97 (674)
T KOG0922|consen 68 VLIVIGETGSGKSTQIPQYLAEAGFASSGK 97 (674)
T ss_pred EEEEEcCCCCCccccHhHHHHhcccccCCc
Confidence 58999999999975 778888887766554
No 478
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.81 E-value=2.1 Score=52.53 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=26.9
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccC--CCceEEeecCC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGN--KGKLIHVDVSS 764 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs--~~~fv~id~s~ 764 (1093)
+..+.|+||+|+|||+++..|+..+... ...+..+++..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDt 390 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT 390 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3578999999999999999888754322 23344455443
No 479
>PRK04182 cytidylate kinase; Provisional
Probab=86.80 E-value=0.68 Score=47.82 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+++.|++|+|||++|+.||+.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999887
No 480
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=86.71 E-value=0.89 Score=55.03 Aligned_cols=84 Identities=11% Similarity=0.004 Sum_probs=49.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCcccccc---ccccchhhhHHHHHHHhC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDC---KLRGKVLVDYIYQEFRSK 803 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~---g~~g~~~~~~l~eal~~~ 803 (1093)
..+++.|++|+|||.++..++..+.......++++....... +......+|... -+......+.+.+.+.+.
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~q-----i~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQ-----IKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHH-----HHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 478999999999999999988766554456666665331100 000000011100 011112345666777776
Q ss_pred CceEEEEccccc
Q 001355 804 PYSVVFLEDLDK 815 (1093)
Q Consensus 804 p~~VI~LDEVDk 815 (1093)
...+|+||.|.-
T Consensus 170 ~~~~vVIDSIq~ 181 (454)
T TIGR00416 170 NPQACVIDSIQT 181 (454)
T ss_pred CCcEEEEecchh
Confidence 678999999875
No 481
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=86.65 E-value=0.87 Score=52.64 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=48.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccc-cCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIF-DCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~-~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
....++||+|+|||.+|..++...-......+.||....-+......+. ....++-..+. .+......+...++....
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~-~~eq~l~i~~~li~s~~~ 134 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPD-TGEQALEIADSLVRSGAV 134 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCC-CHHHHHHHHHHHHhccCC
Confidence 4688999999999999998776554555667778764311000000000 00111111111 122233444444556666
Q ss_pred eEEEEccccc
Q 001355 806 SVVFLEDLDK 815 (1093)
Q Consensus 806 ~VI~LDEVDk 815 (1093)
.+|++|-|..
T Consensus 135 ~lIVIDSvaa 144 (325)
T cd00983 135 DLIVVDSVAA 144 (325)
T ss_pred CEEEEcchHh
Confidence 7999999876
No 482
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=86.63 E-value=0.6 Score=47.84 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+.+.|++|+|||++|+.|++.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999976
No 483
>PRK00698 tmk thymidylate kinase; Validated
Probab=86.60 E-value=0.66 Score=49.14 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=22.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+.|.|++|+|||++++.|++.+
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 484
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=86.53 E-value=0.85 Score=48.08 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
..+.|.|++|+|||++++.|++.+-.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999998743
No 485
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=86.53 E-value=2.1 Score=45.53 Aligned_cols=35 Identities=11% Similarity=0.091 Sum_probs=17.8
Q ss_pred EEEeeCCCCChHHHHHHHH-HHHhccCCCceEEeecC
Q 001355 728 WLAFLGPDKVGKKKIASAL-AEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraL-A~~lfgs~~~fv~id~s 763 (1093)
..+++|.+|+|||..|-.. .......+..++ .|+.
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~-tni~ 37 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVY-TNIP 37 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EE-E--T
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEE-EccC
Confidence 4689999999999988654 333333344433 3655
No 486
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=86.40 E-value=4.8 Score=47.97 Aligned_cols=121 Identities=13% Similarity=0.092 Sum_probs=73.6
Q ss_pred CCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCc
Q 001355 230 GKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPG 306 (1093)
Q Consensus 230 k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~g 306 (1093)
.++.+|.|.+|.| .++.++... +..++.+. -+.++ ..+-++-+..++++-..++. ..+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l-------------~~~fi~i~--~s~l~--~k~~ge~~~~lr~lf~~A~~--~~P 239 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHT-------------TATFIRVV--GSEFV--QKYLGEGPRMVRDVFRLARE--NAP 239 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc-------------CCCEEEEe--hHHHH--HHhcchhHHHHHHHHHHHHh--cCC
Confidence 5789999999998 366666542 23456654 33342 23456667788888777664 567
Q ss_pred EEEEeCcchhhhcCCC-----cchHHHHHHHHHHhhhcCC-CCCcEEEEEecccHHHHHhhhhcCCCCCC--CCcce
Q 001355 307 VVVNYGELKVLVSDSV-----STEAARFVVSQLTSLLKSG-NGEKLWLIGAAMSYETYLKMLAKFPGLDN--DWDLQ 375 (1093)
Q Consensus 307 vil~igdl~~~v~~~~-----~~~~~~~~v~el~~Ll~~~-~~g~lwliG~a~T~~tY~k~~~~~PslE~--~w~Lq 375 (1093)
.||||||+..+..... ....+...++++-+.+... ..+.+-+|+|| ..- -.-+|++-+ ++|-.
T Consensus 240 ~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aT-N~~-----d~LDpAllR~GRfd~~ 310 (398)
T PTZ00454 240 SIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMAT-NRA-----DTLDPALLRPGRLDRK 310 (398)
T ss_pred eEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEec-CCc-----hhCCHHHcCCCcccEE
Confidence 8999999999976431 1123444555554444311 23568899973 533 245676654 44433
No 487
>PRK15453 phosphoribulokinase; Provisional
Probab=86.31 E-value=1 Score=51.04 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=28.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE 765 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~ 765 (1093)
..+.++|.+|+|||++|++|++.+-......+.++...|
T Consensus 6 piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~y 44 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSF 44 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccc
Confidence 368999999999999999999776433333445555543
No 488
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=86.29 E-value=0.55 Score=47.34 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEeeCCCCChHHHHHHHHHHHh
Q 001355 729 LAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+.+.||+|+|||.+++.|++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6789999999999999999865
No 489
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=86.09 E-value=0.55 Score=53.16 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=26.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.++|.|++|+|||++|+.|++.+. .++.++...
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~ 36 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDD 36 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccH
Confidence 588899999999999999998762 345666543
No 490
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=86.07 E-value=7.5 Score=44.53 Aligned_cols=152 Identities=19% Similarity=0.168 Sum_probs=85.8
Q ss_pred chhhHHHHHHHhhcccccCC-CCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeec-------------
Q 001355 211 VDENCRRIGEVLAGRDEKKG-KNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEY------------- 273 (1093)
Q Consensus 211 rdeeirrv~~vL~R~~~~~k-~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~------------- 273 (1093)
+-.++-.-++-|...+++.+ .|-+||||++.| .++-|...=-.... ++ -....||.++-
T Consensus 41 ~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d---~~-~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 41 RAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD---ED-AERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred HHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC---CC-CccccEEEEecCCCCChHHHHHHH
Confidence 55565555555554444544 699999999998 46777765322211 11 12346777661
Q ss_pred --hhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEEEe
Q 001355 274 --EINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLIGA 351 (1093)
Q Consensus 274 --e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwliG~ 351 (1093)
+++.....+..-.+.+.....| ++.. + -=+|.|||+|-+.-+... .-+.+.+-|+.|-. .-++=+||+
T Consensus 117 L~~lgaP~~~~~~~~~~~~~~~~l---lr~~-~-vrmLIIDE~H~lLaGs~~--~qr~~Ln~LK~L~N---eL~ipiV~v 186 (302)
T PF05621_consen 117 LEALGAPYRPRDRVAKLEQQVLRL---LRRL-G-VRMLIIDEFHNLLAGSYR--KQREFLNALKFLGN---ELQIPIVGV 186 (302)
T ss_pred HHHhCcccCCCCCHHHHHHHHHHH---HHHc-C-CcEEEeechHHHhcccHH--HHHHHHHHHHHHhh---ccCCCeEEe
Confidence 0111111111223334443343 3432 2 447789999997765432 23333334444422 235777787
Q ss_pred cccHHHHHhhhhcCCCCCCCCcceeee
Q 001355 352 AMSYETYLKMLAKFPGLDNDWDLQLLP 378 (1093)
Q Consensus 352 a~T~~tY~k~~~~~PslE~~w~Lq~v~ 378 (1093)
+|-+.|. .+..||-|.++|+...+|
T Consensus 187 -Gt~~A~~-al~~D~QLa~RF~~~~Lp 211 (302)
T PF05621_consen 187 -GTREAYR-ALRTDPQLASRFEPFELP 211 (302)
T ss_pred -ccHHHHH-HhccCHHHHhccCCccCC
Confidence 6889996 678999999999555554
No 491
>PRK14529 adenylate kinase; Provisional
Probab=86.07 E-value=0.58 Score=51.31 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=20.9
Q ss_pred EEeeCCCCChHHHHHHHHHHHh
Q 001355 729 LAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
++|.||||+||+++|+.|++.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
No 492
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=86.01 E-value=1.4 Score=56.70 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=49.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHH----HhC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEF----RSK 803 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal----~~~ 803 (1093)
.+++.|++|||||++.+++.+.+-.....++.+-.+.. .. .......|....+....+...- .-.
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~---Aa--------~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~ 438 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGK---AA--------EGLQAESGIESRTLASLEYAWANGRDLLS 438 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHH---HH--------HHHHhccCCceeeHHHHHhhhccCcccCC
Confidence 58999999999999999998766433333332222110 00 0000001111112111111110 112
Q ss_pred CceEEEEcccccccCHHHHHHHhhhhc
Q 001355 804 PYSVVFLEDLDKAADPIVQSSLTKAIS 830 (1093)
Q Consensus 804 p~~VI~LDEVDkiad~~vq~~Ll~aLe 830 (1093)
+..||++||+-. ++......|++...
T Consensus 439 ~~~llIvDEasM-v~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 439 DKDVLVIDEAGM-VGSRQMARVLKEAE 464 (744)
T ss_pred CCcEEEEECccc-CCHHHHHHHHHHHH
Confidence 456999999999 88887777777543
No 493
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=85.99 E-value=0.99 Score=40.84 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=26.6
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
+++.|..|+|||.++..|+..+-..+.+...+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 678999999999999999998865555555555
No 494
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=85.91 E-value=5.2 Score=48.86 Aligned_cols=134 Identities=20% Similarity=0.107 Sum_probs=91.9
Q ss_pred hhhHHHHHHHhhccccc-------CCCCcEEeccchhh--H-HHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcC
Q 001355 212 DENCRRIGEVLAGRDEK-------KGKNPLLVGVCANS--A-LKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGG 281 (1093)
Q Consensus 212 deeirrv~~vL~R~~~~-------~k~NpvlVGe~~~~--a-~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~ 281 (1093)
.+.++.+++.+..+++. ..+--+|.|-||.| . .+.++. .-+.+|++++ .+++ -
T Consensus 251 k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~-------------~~~~~fi~v~--~~~l--~ 313 (494)
T COG0464 251 KEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL-------------ESRSRFISVK--GSEL--L 313 (494)
T ss_pred HHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh-------------hCCCeEEEee--CHHH--h
Confidence 45577777777754442 11245689999987 2 444443 2468899998 6666 3
Q ss_pred CccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCc--chHHHHHHHHHHhhhcCC-CCCcEEEEEecccHHHH
Q 001355 282 RVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVS--TEAARFVVSQLTSLLKSG-NGEKLWLIGAAMSYETY 358 (1093)
Q Consensus 282 ~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~--~~~~~~~v~el~~Ll~~~-~~g~lwliG~a~T~~tY 358 (1093)
.++=||.|.+++++-..+++ ..+.||||||+.-+...... .+..+.+|.++-..+... ....|.+|||| ..-.
T Consensus 314 sk~vGesek~ir~~F~~A~~--~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aT-N~p~- 389 (494)
T COG0464 314 SKWVGESEKNIRELFEKARK--LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAAT-NRPD- 389 (494)
T ss_pred ccccchHHHHHHHHHHHHHc--CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecC-CCcc-
Confidence 56789999999999998884 67899999999999987542 345567888887777421 23458899985 4322
Q ss_pred HhhhhcCCCCCC
Q 001355 359 LKMLAKFPGLDN 370 (1093)
Q Consensus 359 ~k~~~~~PslE~ 370 (1093)
.-+|++-+
T Consensus 390 ----~ld~a~lR 397 (494)
T COG0464 390 ----DLDPALLR 397 (494)
T ss_pred ----ccCHhhcc
Confidence 34566655
No 495
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=85.75 E-value=9.1 Score=36.80 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=53.2
Q ss_pred CchhhHHHHHHHhhcccccCCCCcEEeccchhhH---HHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHH
Q 001355 210 DVDENCRRIGEVLAGRDEKKGKNPLLVGVCANSA---LKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVE 286 (1093)
Q Consensus 210 ~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~a---~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~ 286 (1093)
++++.+..+...+.+ ...++.+|+|.+|+|. ++.++..+.. .+.+++.++ ...+........
T Consensus 2 ~~~~~~~~i~~~~~~---~~~~~v~i~G~~G~GKT~l~~~i~~~~~~----------~~~~v~~~~--~~~~~~~~~~~~ 66 (151)
T cd00009 2 GQEEAIEALREALEL---PPPKNLLLYGPPGTGKTTLARAIANELFR----------PGAPFLYLN--ASDLLEGLVVAE 66 (151)
T ss_pred chHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHhhc----------CCCCeEEEe--hhhhhhhhHHHH
Confidence 578888888888887 6778999999999983 5555555431 245667666 433321111111
Q ss_pred HHHHHHHHHHHHhhccCCCcEEEEeCcchhh
Q 001355 287 MMMLKFKEVESAVGRCSGPGVVVNYGELKVL 317 (1093)
Q Consensus 287 e~e~rlkel~~~v~~~~~~gvil~igdl~~~ 317 (1093)
..+............ ...+.+|++||+..+
T Consensus 67 ~~~~~~~~~~~~~~~-~~~~~~lilDe~~~~ 96 (151)
T cd00009 67 LFGHFLVRLLFELAE-KAKPGVLFIDEIDSL 96 (151)
T ss_pred HhhhhhHhHHHHhhc-cCCCeEEEEeChhhh
Confidence 111000111111111 256789999999987
No 496
>PRK14738 gmk guanylate kinase; Provisional
Probab=85.62 E-value=0.74 Score=49.62 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.2
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHH
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
..+++|.||+|+|||++++.|.+.
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 357999999999999999999764
No 497
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=85.60 E-value=1.9 Score=48.41 Aligned_cols=101 Identities=15% Similarity=0.213 Sum_probs=58.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccC---CCCcc------ccC-C-CccccccccccchhhhH-
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVS---QPNSI------FDC-Q-NIDFCDCKLRGKVLVDY- 795 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~---~~~si------~~~-~-~l~G~~~g~~g~~~~~~- 795 (1093)
.+-+.|++|+|||+++|.|.++.-..... |.++........ ....+ .+. . .+.-++..+-|. ..++
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt~G~-i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG-QrQRi 118 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPTSGE-ILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG-QRQRI 118 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCCCCce-EEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch-hhhhH
Confidence 58999999999999999999877433333 333322100000 00000 000 0 111222223332 2233
Q ss_pred -HHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 796 -IYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 796 -l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
++.++.-+| .+|+.||....+|..+|..++.+|.+
T Consensus 119 ~IARALal~P-~liV~DEpvSaLDvSiqaqIlnLL~d 154 (268)
T COG4608 119 GIARALALNP-KLIVADEPVSALDVSVQAQILNLLKD 154 (268)
T ss_pred HHHHHHhhCC-cEEEecCchhhcchhHHHHHHHHHHH
Confidence 566777777 68899999875788888888888753
No 498
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=85.58 E-value=5.6 Score=44.97 Aligned_cols=100 Identities=11% Similarity=0.154 Sum_probs=52.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHH---H-h
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEF---R-S 802 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal---~-~ 802 (1093)
-.++|.|++|+|||.+++.|+..+.........+++..+.-.. ...+.......+.+. +...+ ...+.+++ . .
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~-~~ql~~~~~~~~~~~-~~~~~-~~~l~~~l~~l~~~ 152 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGT-VQQLQDYVKTIGFEV-IAVRD-EAAMTRALTYFKEE 152 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHHhhhcCceE-EecCC-HHHHHHHHHHHHhc
Confidence 3789999999999999999998876544444445543321000 000000001111110 00011 11233332 2 2
Q ss_pred CCceEEEEccccccc--CHHHHHHHhhhhc
Q 001355 803 KPYSVVFLEDLDKAA--DPIVQSSLTKAIS 830 (1093)
Q Consensus 803 ~p~~VI~LDEVDkia--d~~vq~~Ll~aLe 830 (1093)
....+|+||-... . +......|.+.++
T Consensus 153 ~~~D~ViIDt~Gr-~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 153 ARVDYILIDTAGK-NYRASETVEEMIETMG 181 (270)
T ss_pred CCCCEEEEECCCC-CcCCHHHHHHHHHHHh
Confidence 3568999999988 6 3555666666664
No 499
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=85.55 E-value=1 Score=50.39 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=27.7
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
+..++++|++|+|||.+|..++........+.++++..
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 35789999999999999998776543444555555543
No 500
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=85.51 E-value=0.65 Score=48.72 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=18.8
Q ss_pred EEeeCCCCChHHHHHHHHHH
Q 001355 729 LAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~ 748 (1093)
++++|.||||||++++.|++
T Consensus 3 I~ITGTPGvGKTT~~~~L~~ 22 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLRE 22 (180)
T ss_pred EEEeCCCCCchHHHHHHHHH
Confidence 78999999999999999993
Done!