Query 001355
Match_columns 1093
No_of_seqs 369 out of 2403
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 23:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001355.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001355hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 100.0 7.6E-61 2.6E-65 605.7 46.8 792 10-1071 4-838 (854)
2 1r6b_X CLPA protein; AAA+, N-t 100.0 3.9E-57 1.3E-61 565.1 47.0 709 12-1072 2-735 (758)
3 3pxi_A Negative regulator of g 100.0 9.1E-57 3.1E-61 561.9 38.8 712 10-1072 4-744 (758)
4 3pxg_A Negative regulator of g 100.0 2.2E-30 7.5E-35 306.9 19.6 307 10-380 4-323 (468)
5 4fcw_A Chaperone protein CLPB; 99.9 2E-25 6.7E-30 248.3 27.4 296 679-1074 4-300 (311)
6 3hws_A ATP-dependent CLP prote 99.8 1.8E-21 6.2E-26 222.7 13.0 291 682-1057 5-327 (363)
7 1um8_A ATP-dependent CLP prote 99.8 1.9E-19 6.3E-24 206.8 21.5 281 682-1058 11-345 (376)
8 1ofh_A ATP-dependent HSL prote 99.8 1.7E-17 5.7E-22 183.6 19.9 243 682-1055 5-276 (310)
9 1g41_A Heat shock protein HSLU 99.7 1.6E-16 5.3E-21 185.9 19.3 85 974-1058 319-413 (444)
10 1ojl_A Transcriptional regulat 99.7 1.5E-16 5.1E-21 178.3 13.0 225 692-1049 2-232 (304)
11 3dzd_A Transcriptional regulat 99.7 8.4E-16 2.9E-20 176.7 17.8 239 676-1048 101-357 (368)
12 2bjv_A PSP operon transcriptio 99.7 3.2E-16 1.1E-20 170.9 13.1 228 692-1049 6-237 (265)
13 1ny5_A Transcriptional regulat 99.6 6.9E-16 2.4E-20 178.5 15.2 226 692-1048 137-366 (387)
14 1khy_A CLPB protein; alpha hel 99.6 1.4E-15 4.6E-20 152.1 13.8 140 10-172 4-145 (148)
15 3fes_A ATP-dependent CLP endop 99.6 1.6E-15 5.4E-20 151.9 11.1 136 10-170 6-143 (145)
16 3fh2_A Probable ATP-dependent 99.6 2.4E-15 8.2E-20 150.7 12.3 138 9-170 4-143 (146)
17 3syl_A Protein CBBX; photosynt 99.6 5.1E-14 1.7E-18 156.3 20.7 223 680-1058 19-268 (309)
18 2y1q_A CLPC N-domain, negative 99.6 7.5E-15 2.6E-19 147.2 11.0 138 10-172 4-143 (150)
19 3m6a_A ATP-dependent protease 99.5 7E-14 2.4E-18 168.5 16.7 234 684-1055 73-318 (543)
20 3zri_A CLPB protein, CLPV; cha 99.5 8.7E-14 3E-18 143.3 12.0 119 9-153 22-141 (171)
21 1k6k_A ATP-dependent CLP prote 99.5 9.6E-14 3.3E-18 138.0 11.5 133 12-169 2-140 (143)
22 3pfi_A Holliday junction ATP-d 99.5 2.9E-12 9.9E-17 144.2 22.6 181 692-1034 29-217 (338)
23 1hqc_A RUVB; extended AAA-ATPa 99.4 6.7E-12 2.3E-16 140.0 19.2 127 692-855 12-147 (324)
24 3n70_A Transport activator; si 99.3 1.8E-12 6.1E-17 129.1 9.9 115 692-855 1-115 (145)
25 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 1.1E-11 3.8E-16 147.5 15.3 146 681-855 11-158 (500)
26 2r44_A Uncharacterized protein 99.3 8.6E-12 2.9E-16 140.2 13.1 138 682-855 17-159 (331)
27 3pvs_A Replication-associated 99.3 2.7E-11 9.1E-16 142.7 14.7 190 692-1048 26-218 (447)
28 3eie_A Vacuolar protein sortin 99.3 1.2E-10 4.2E-15 130.9 19.4 214 692-1059 18-242 (322)
29 3t15_A Ribulose bisphosphate c 99.2 4.2E-11 1.4E-15 133.2 14.3 134 698-855 13-164 (293)
30 4b4t_J 26S protease regulatory 99.2 2.1E-10 7.2E-15 132.4 20.5 128 692-855 148-296 (405)
31 2qp9_X Vacuolar protein sortin 99.2 2.7E-10 9.3E-15 130.1 20.6 210 692-1058 51-274 (355)
32 1xwi_A SKD1 protein; VPS4B, AA 99.2 7.7E-10 2.6E-14 124.7 23.8 214 692-1058 12-236 (322)
33 3vfd_A Spastin; ATPase, microt 99.2 2.3E-10 7.8E-15 132.0 19.6 136 692-855 115-261 (389)
34 1g8p_A Magnesium-chelatase 38 99.2 7.2E-11 2.5E-15 132.9 14.0 51 804-855 144-196 (350)
35 3d8b_A Fidgetin-like protein 1 99.2 7.8E-10 2.7E-14 126.3 22.2 150 678-855 62-230 (357)
36 2zan_A Vacuolar protein sortin 99.2 1.1E-09 3.7E-14 128.8 23.3 212 692-1058 134-358 (444)
37 4b4t_H 26S protease regulatory 99.2 3.7E-10 1.3E-14 132.0 18.8 128 692-855 209-357 (467)
38 3h4m_A Proteasome-activating n 99.2 3.6E-10 1.2E-14 124.0 17.3 130 692-855 17-165 (285)
39 3uk6_A RUVB-like 2; hexameric 99.2 5.2E-10 1.8E-14 127.0 18.5 64 692-764 44-107 (368)
40 3u61_B DNA polymerase accessor 99.2 2.8E-10 9.5E-15 127.4 15.9 115 692-855 26-145 (324)
41 4b4t_I 26S protease regulatory 99.2 3.2E-10 1.1E-14 131.4 16.5 128 692-855 182-330 (437)
42 2chg_A Replication factor C sm 99.2 9.2E-10 3.1E-14 114.0 18.3 118 692-855 17-141 (226)
43 4b4t_L 26S protease subunit RP 99.1 6.8E-10 2.3E-14 129.8 18.8 128 692-855 181-329 (437)
44 4b4t_M 26S protease regulatory 99.1 5E-10 1.7E-14 130.8 17.5 128 692-855 181-329 (434)
45 3cf0_A Transitional endoplasmi 99.1 6.7E-10 2.3E-14 123.8 17.6 127 692-855 15-163 (301)
46 3k1j_A LON protease, ATP-depen 99.1 5.9E-11 2E-15 144.8 9.7 54 692-760 41-94 (604)
47 3co5_A Putative two-component 99.1 2.8E-11 9.5E-16 120.2 5.3 111 693-855 5-115 (143)
48 4b4t_K 26S protease regulatory 99.1 7.8E-10 2.7E-14 129.1 18.0 128 692-855 172-320 (428)
49 3b9p_A CG5977-PA, isoform A; A 99.1 1.6E-09 5.5E-14 119.5 19.7 138 692-855 21-168 (297)
50 2chq_A Replication factor C sm 99.1 8.7E-10 3E-14 121.9 16.1 118 692-855 17-141 (319)
51 2qz4_A Paraplegin; AAA+, SPG7, 99.1 1.6E-09 5.5E-14 116.8 17.8 105 692-817 6-110 (262)
52 1iqp_A RFCS; clamp loader, ext 99.1 1.5E-09 5E-14 120.5 17.5 118 692-855 25-149 (327)
53 2qby_B CDC6 homolog 3, cell di 99.1 8.7E-10 3E-14 125.5 14.4 140 691-855 19-173 (384)
54 1sxj_D Activator 1 41 kDa subu 99.1 1.1E-09 3.7E-14 123.2 14.7 132 692-855 37-172 (353)
55 3te6_A Regulatory protein SIR3 99.0 1.7E-09 5.8E-14 121.8 14.7 143 691-855 19-172 (318)
56 1fnn_A CDC6P, cell division co 99.0 3.1E-09 1.1E-13 120.8 16.7 146 692-855 17-168 (389)
57 1d2n_A N-ethylmaleimide-sensit 99.0 1.2E-09 4.2E-14 119.3 12.5 136 690-855 31-176 (272)
58 1a5t_A Delta prime, HOLB; zinc 99.0 4.4E-09 1.5E-13 118.9 17.4 133 694-855 4-147 (334)
59 1jr3_A DNA polymerase III subu 99.0 1.5E-08 5.1E-13 114.8 21.4 134 692-854 16-157 (373)
60 1sxj_B Activator 1 37 kDa subu 99.0 4.7E-09 1.6E-13 116.2 16.8 117 692-855 21-146 (323)
61 1lv7_A FTSH; alpha/beta domain 99.0 6E-09 2.1E-13 112.8 17.1 134 692-855 12-159 (257)
62 1njg_A DNA polymerase III subu 99.0 1.9E-08 6.6E-13 105.1 20.1 136 692-855 23-165 (250)
63 3f9v_A Minichromosome maintena 99.0 1.2E-10 4.2E-15 141.7 2.8 154 681-855 284-443 (595)
64 2v1u_A Cell division control p 99.0 1.2E-09 4E-14 123.9 10.6 145 692-855 19-176 (387)
65 3hu3_A Transitional endoplasmi 98.9 5.1E-09 1.7E-13 124.6 14.6 136 692-855 204-349 (489)
66 2ce7_A Cell division protein F 98.9 1.6E-08 5.5E-13 119.7 17.0 134 692-855 16-163 (476)
67 2r62_A Cell division protease 98.9 3.3E-09 1.1E-13 115.3 8.6 128 692-855 11-160 (268)
68 1sxj_C Activator 1 40 kDa subu 98.8 2.5E-08 8.7E-13 112.6 15.8 117 692-855 25-149 (340)
69 2gno_A DNA polymerase III, gam 98.8 2.6E-08 8.9E-13 111.6 14.9 114 696-855 1-121 (305)
70 2c9o_A RUVB-like 1; hexameric 98.8 8.5E-08 2.9E-12 113.0 19.7 65 691-764 36-100 (456)
71 1l8q_A Chromosomal replication 98.8 3.6E-08 1.2E-12 110.4 15.1 85 728-830 39-125 (324)
72 3bos_A Putative DNA replicatio 98.8 5.6E-08 1.9E-12 102.5 15.6 77 728-831 54-132 (242)
73 1sxj_E Activator 1 40 kDa subu 98.8 5.6E-08 1.9E-12 109.6 15.5 140 692-855 14-173 (354)
74 1sxj_A Activator 1 95 kDa subu 98.8 7.6E-08 2.6E-12 115.2 17.2 131 692-831 39-177 (516)
75 2p65_A Hypothetical protein PF 98.8 1.9E-08 6.4E-13 101.7 10.0 151 209-373 25-179 (187)
76 2qby_A CDC6 homolog 1, cell di 98.8 2.4E-08 8.1E-13 113.0 11.6 141 692-855 20-172 (386)
77 3cf2_A TER ATPase, transitiona 98.7 9E-09 3.1E-13 128.3 8.1 125 231-380 239-372 (806)
78 3f8t_A Predicted ATPase involv 98.7 2.8E-08 9.5E-13 116.2 11.5 144 682-855 204-348 (506)
79 1jbk_A CLPB protein; beta barr 98.7 2.6E-08 8.7E-13 100.6 9.8 156 209-380 25-183 (195)
80 3cf2_A TER ATPase, transitiona 98.7 4.6E-08 1.6E-12 122.0 13.6 136 692-855 204-349 (806)
81 2z4s_A Chromosomal replication 98.7 2.1E-07 7.1E-12 109.3 17.1 86 728-830 132-221 (440)
82 2dhr_A FTSH; AAA+ protein, hex 98.7 6.8E-08 2.3E-12 115.0 13.0 134 692-855 31-178 (499)
83 3pxg_A Negative regulator of g 98.7 4.6E-08 1.6E-12 115.8 11.3 113 693-855 181-300 (468)
84 1in4_A RUVB, holliday junction 98.7 2E-06 6.9E-11 97.1 23.6 104 692-832 25-129 (334)
85 2p65_A Hypothetical protein PF 98.6 2.3E-08 8E-13 101.0 5.9 125 690-855 20-161 (187)
86 1jbk_A CLPB protein; beta barr 98.6 4.1E-08 1.4E-12 99.1 6.9 124 691-855 21-160 (195)
87 1ypw_A Transitional endoplasmi 98.6 1.2E-08 4.1E-13 128.4 2.8 125 209-352 207-347 (806)
88 1r6b_X CLPA protein; AAA+, N-t 98.6 2.6E-07 8.8E-12 115.5 14.3 121 692-855 186-324 (758)
89 1ixz_A ATP-dependent metallopr 98.6 6.1E-07 2.1E-11 96.8 14.8 68 729-815 52-119 (254)
90 1iy2_A ATP-dependent metallopr 98.5 4.3E-07 1.5E-11 99.6 13.5 97 692-815 40-143 (278)
91 1qvr_A CLPB protein; coiled co 98.5 2.9E-07 1E-11 116.6 13.8 121 692-855 170-308 (854)
92 3pxi_A Negative regulator of g 98.5 5E-07 1.7E-11 113.0 12.5 113 693-855 181-300 (758)
93 2x8a_A Nuclear valosin-contain 98.3 2.8E-06 9.5E-11 93.5 12.1 68 729-815 47-114 (274)
94 1w5s_A Origin recognition comp 98.3 1.1E-06 3.6E-11 100.8 8.0 146 692-854 22-187 (412)
95 1ypw_A Transitional endoplasmi 98.1 3.9E-06 1.3E-10 105.6 9.1 136 692-855 204-349 (806)
96 3ec2_A DNA replication protein 98.0 5.8E-06 2E-10 84.3 6.7 101 727-855 39-142 (180)
97 2w58_A DNAI, primosome compone 98.0 4.4E-06 1.5E-10 86.6 4.7 38 727-764 55-92 (202)
98 2qgz_A Helicase loader, putati 97.6 1.3E-05 4.5E-10 89.6 1.6 38 727-764 153-191 (308)
99 4akg_A Glutathione S-transfera 97.6 0.00023 7.9E-09 98.8 13.8 118 728-855 1269-1393(2695)
100 2kjq_A DNAA-related protein; s 97.6 9.5E-05 3.2E-09 73.9 6.9 87 728-855 38-124 (149)
101 4akg_A Glutathione S-transfera 97.2 0.0013 4.3E-08 91.6 12.7 103 728-857 647-758 (2695)
102 1tue_A Replication protein E1; 97.1 0.00054 1.8E-08 72.3 6.9 25 728-752 60-84 (212)
103 1jr3_D DNA polymerase III, del 97.0 0.004 1.4E-07 70.0 13.3 91 728-854 20-115 (343)
104 3vkg_A Dynein heavy chain, cyt 97.0 0.0003 1E-08 98.3 3.8 119 728-855 1306-1431(3245)
105 2qen_A Walker-type ATPase; unk 96.8 0.0027 9.2E-08 70.4 9.1 53 692-764 12-64 (350)
106 1u0j_A DNA replication protein 96.7 0.0025 8.6E-08 69.8 7.9 23 728-750 106-128 (267)
107 3fh2_A Probable ATP-dependent 96.6 0.0031 1.1E-07 62.4 7.3 65 8-79 78-142 (146)
108 2fna_A Conserved hypothetical 96.6 0.0045 1.5E-07 68.7 9.3 53 692-764 13-65 (357)
109 3fes_A ATP-dependent CLP endop 96.6 0.0031 1E-07 62.5 6.8 54 8-61 78-131 (145)
110 3vkg_A Dynein heavy chain, cyt 96.5 0.0068 2.3E-07 85.1 11.6 102 729-857 607-718 (3245)
111 3syl_A Protein CBBX; photosynt 96.2 0.014 4.7E-07 64.1 10.1 135 228-380 65-202 (309)
112 2orw_A Thymidine kinase; TMTK, 96.2 0.0039 1.3E-07 64.3 5.1 98 728-831 5-102 (184)
113 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.011 3.6E-07 66.6 8.5 69 728-815 125-193 (331)
114 3upu_A ATP-dependent DNA helic 96.1 0.012 4.2E-07 69.0 9.5 115 696-830 29-153 (459)
115 2b8t_A Thymidine kinase; deoxy 95.9 0.027 9.3E-07 60.0 10.5 98 727-830 13-114 (223)
116 3jvv_A Twitching mobility prot 95.7 0.029 9.9E-07 63.9 10.1 96 727-833 124-222 (356)
117 3vfd_A Spastin; ATPase, microt 95.7 0.019 6.6E-07 65.7 8.7 141 209-374 118-275 (389)
118 3d8b_A Fidgetin-like protein 1 95.5 0.091 3.1E-06 59.5 13.3 140 209-373 87-243 (357)
119 1ye8_A Protein THEP1, hypothet 95.3 0.048 1.7E-06 55.8 9.3 23 728-750 2-24 (178)
120 2eyu_A Twitching motility prot 95.3 0.059 2E-06 58.6 10.4 96 727-832 26-123 (261)
121 2r8r_A Sensor protein; KDPD, P 95.2 0.023 8E-07 60.7 6.4 37 727-763 7-43 (228)
122 2qp9_X Vacuolar protein sortin 95.1 0.053 1.8E-06 61.5 9.8 140 210-374 55-210 (355)
123 2y1q_A CLPC N-domain, negative 95.1 0.037 1.3E-06 54.5 7.2 53 9-61 77-129 (150)
124 1xwi_A SKD1 protein; VPS4B, AA 95.0 0.064 2.2E-06 60.0 9.7 120 231-374 46-172 (322)
125 3eie_A Vacuolar protein sortin 94.7 0.17 5.7E-06 56.3 12.1 140 210-374 22-177 (322)
126 3h4m_A Proteasome-activating n 94.6 0.31 1.1E-05 52.6 13.6 125 209-352 20-163 (285)
127 3dm5_A SRP54, signal recogniti 94.6 0.37 1.3E-05 56.3 15.0 40 726-765 100-139 (443)
128 1qhx_A CPT, protein (chloramph 94.6 0.028 9.6E-07 56.3 4.9 33 728-763 5-37 (178)
129 3hu3_A Transitional endoplasmi 94.5 0.19 6.6E-06 59.5 12.8 142 209-375 207-366 (489)
130 2ewv_A Twitching motility prot 94.5 0.096 3.3E-06 59.9 9.7 96 727-832 137-234 (372)
131 3e1s_A Exodeoxyribonuclease V, 94.3 0.078 2.7E-06 64.2 8.9 93 728-832 206-306 (574)
132 1k6k_A ATP-dependent CLP prote 94.3 0.085 2.9E-06 51.5 7.5 53 9-61 77-129 (143)
133 2a5y_B CED-4; apoptosis; HET: 94.1 0.3 1E-05 58.5 13.3 44 695-748 131-174 (549)
134 3cmw_A Protein RECA, recombina 94.0 0.045 1.6E-06 73.3 6.3 90 727-819 1083-1175(1706)
135 2pt7_A CAG-ALFA; ATPase, prote 94.0 0.087 3E-06 59.3 7.8 92 728-832 173-264 (330)
136 1xx6_A Thymidine kinase; NESG, 93.9 0.08 2.7E-06 55.0 6.8 99 727-831 9-107 (191)
137 3trf_A Shikimate kinase, SK; a 93.9 0.037 1.3E-06 55.9 4.2 23 728-750 7-29 (185)
138 2zan_A Vacuolar protein sortin 93.9 0.11 3.8E-06 60.7 8.8 121 230-374 167-294 (444)
139 2qz4_A Paraplegin; AAA+, SPG7, 93.8 0.43 1.5E-05 50.5 12.6 73 230-321 39-114 (262)
140 4b4t_J 26S protease regulatory 93.8 0.2 6.8E-06 57.9 10.5 126 230-380 182-319 (405)
141 4b4t_I 26S protease regulatory 93.8 0.36 1.2E-05 56.2 12.5 126 230-380 216-353 (437)
142 3vaa_A Shikimate kinase, SK; s 93.6 0.047 1.6E-06 56.3 4.3 23 728-750 27-49 (199)
143 2r2a_A Uncharacterized protein 93.6 0.13 4.4E-06 53.8 7.6 24 727-750 6-29 (199)
144 1khy_A CLPB protein; alpha hel 93.5 0.14 5E-06 50.0 7.6 52 9-61 80-131 (148)
145 3cmu_A Protein RECA, recombina 93.5 0.15 5.1E-06 69.4 9.9 89 726-815 1427-1516(2050)
146 1gvn_B Zeta; postsegregational 93.5 0.14 4.9E-06 56.3 8.2 35 726-763 33-67 (287)
147 4b4t_M 26S protease regulatory 93.5 0.26 9E-06 57.5 10.8 126 230-380 215-352 (434)
148 3kb2_A SPBC2 prophage-derived 93.4 0.057 2E-06 53.4 4.5 23 728-750 3-25 (173)
149 3kl4_A SRP54, signal recogniti 93.4 0.2 6.7E-06 58.6 9.7 40 725-764 96-135 (433)
150 4b4t_H 26S protease regulatory 93.3 0.31 1.1E-05 57.2 11.0 127 229-380 242-380 (467)
151 1zu4_A FTSY; GTPase, signal re 93.3 0.3 1E-05 54.7 10.5 86 679-764 50-143 (320)
152 2rhm_A Putative kinase; P-loop 93.2 0.057 1.9E-06 54.6 4.2 24 727-750 6-29 (193)
153 1kht_A Adenylate kinase; phosp 93.1 0.065 2.2E-06 53.9 4.5 37 727-763 4-40 (192)
154 1nks_A Adenylate kinase; therm 93.1 0.056 1.9E-06 54.4 4.0 36 728-763 3-38 (194)
155 2ze6_A Isopentenyl transferase 93.1 0.065 2.2E-06 57.8 4.6 31 728-761 3-33 (253)
156 3b9q_A Chloroplast SRP recepto 93.1 0.33 1.1E-05 53.9 10.4 75 682-756 49-130 (302)
157 1w36_D RECD, exodeoxyribonucle 93.1 0.39 1.3E-05 58.4 12.0 26 804-830 262-287 (608)
158 1zuh_A Shikimate kinase; alpha 93.0 0.062 2.1E-06 53.5 4.1 24 727-750 8-31 (168)
159 2i3b_A HCR-ntpase, human cance 93.0 0.089 3E-06 54.4 5.3 24 728-751 3-26 (189)
160 2v1u_A Cell division control p 92.9 0.16 5.5E-06 56.7 7.8 130 209-352 22-174 (387)
161 1aky_A Adenylate kinase; ATP:A 92.8 0.067 2.3E-06 55.8 4.2 24 727-750 5-28 (220)
162 3b9p_A CG5977-PA, isoform A; A 92.8 0.59 2E-05 50.7 11.9 125 209-352 24-166 (297)
163 2chg_A Replication factor C sm 92.8 0.64 2.2E-05 47.0 11.5 117 209-352 20-139 (226)
164 2cdn_A Adenylate kinase; phosp 92.8 0.078 2.7E-06 54.4 4.6 26 725-750 19-44 (201)
165 1via_A Shikimate kinase; struc 92.7 0.064 2.2E-06 53.8 3.7 23 728-750 6-28 (175)
166 2c95_A Adenylate kinase 1; tra 92.7 0.071 2.4E-06 54.0 4.0 24 727-750 10-33 (196)
167 3uie_A Adenylyl-sulfate kinase 92.7 0.1 3.4E-06 53.8 5.2 37 727-763 26-62 (200)
168 2pez_A Bifunctional 3'-phospho 92.7 0.1 3.5E-06 52.5 5.1 36 727-762 6-41 (179)
169 4b4t_L 26S protease subunit RP 92.6 0.69 2.4E-05 54.0 12.7 126 230-380 215-352 (437)
170 2iyv_A Shikimate kinase, SK; t 92.6 0.07 2.4E-06 53.8 3.8 23 728-750 4-26 (184)
171 3iij_A Coilin-interacting nucl 92.5 0.072 2.5E-06 53.6 3.7 23 728-750 13-35 (180)
172 2yvu_A Probable adenylyl-sulfa 92.4 0.12 4E-06 52.4 5.2 37 726-762 13-49 (186)
173 2og2_A Putative signal recogni 92.4 0.45 1.5E-05 54.2 10.5 32 725-756 156-187 (359)
174 2qby_A CDC6 homolog 1, cell di 92.3 0.35 1.2E-05 53.8 9.5 133 209-357 23-174 (386)
175 1tev_A UMP-CMP kinase; ploop, 92.3 0.089 3.1E-06 53.0 4.2 24 727-750 4-27 (196)
176 2p5t_B PEZT; postsegregational 92.3 0.23 7.7E-06 53.3 7.5 36 726-764 32-67 (253)
177 1e6c_A Shikimate kinase; phosp 92.3 0.081 2.8E-06 52.5 3.7 23 728-750 4-26 (173)
178 1kag_A SKI, shikimate kinase I 92.2 0.083 2.8E-06 52.6 3.7 23 728-750 6-28 (173)
179 1rz3_A Hypothetical protein rb 92.2 0.18 6.2E-06 52.0 6.4 37 727-763 23-59 (201)
180 3hr8_A Protein RECA; alpha and 92.1 0.13 4.3E-06 58.7 5.5 38 727-764 62-99 (356)
181 3cm0_A Adenylate kinase; ATP-b 92.1 0.078 2.7E-06 53.4 3.4 24 727-750 5-28 (186)
182 3zri_A CLPB protein, CLPV; cha 92.0 0.16 5.4E-06 51.9 5.5 60 95-171 25-86 (171)
183 2pt5_A Shikimate kinase, SK; a 92.0 0.1 3.5E-06 51.6 4.1 23 728-750 2-24 (168)
184 3te6_A Regulatory protein SIR3 92.0 0.4 1.4E-05 53.7 9.3 157 209-380 23-196 (318)
185 1zp6_A Hypothetical protein AT 91.9 0.092 3.1E-06 53.1 3.7 34 727-763 10-43 (191)
186 1p9r_A General secretion pathw 91.9 0.72 2.4E-05 53.6 11.7 95 727-833 168-262 (418)
187 3a8t_A Adenylate isopentenyltr 91.8 0.082 2.8E-06 59.7 3.5 33 727-762 41-73 (339)
188 3t61_A Gluconokinase; PSI-biol 91.8 0.11 3.7E-06 53.4 4.1 23 728-750 20-42 (202)
189 1y63_A LMAJ004144AAA protein; 91.8 0.098 3.4E-06 53.2 3.8 34 727-764 11-44 (184)
190 2yhs_A FTSY, cell division pro 91.8 0.4 1.4E-05 56.9 9.4 32 725-756 292-323 (503)
191 3lw7_A Adenylate kinase relate 91.8 0.099 3.4E-06 51.4 3.7 22 728-750 3-24 (179)
192 2zr9_A Protein RECA, recombina 91.7 0.15 5E-06 57.9 5.5 38 727-764 62-99 (349)
193 3tlx_A Adenylate kinase 2; str 91.7 0.23 7.8E-06 53.0 6.7 32 727-763 30-61 (243)
194 1vma_A Cell division protein F 91.7 0.65 2.2E-05 51.7 10.6 40 725-764 103-142 (306)
195 3sr0_A Adenylate kinase; phosp 91.7 0.11 3.7E-06 54.6 4.0 32 728-764 2-33 (206)
196 2bwj_A Adenylate kinase 5; pho 91.5 0.11 3.7E-06 52.7 3.8 31 728-763 14-44 (199)
197 2j9r_A Thymidine kinase; TK1, 91.5 0.18 6.3E-06 53.3 5.5 99 727-831 29-127 (214)
198 2plr_A DTMP kinase, probable t 91.4 0.19 6.4E-06 51.4 5.4 25 727-751 5-29 (213)
199 3fb4_A Adenylate kinase; psych 91.3 0.12 4.3E-06 53.4 4.1 23 728-750 2-24 (216)
200 1ly1_A Polynucleotide kinase; 91.3 0.12 4E-06 51.5 3.7 23 727-749 3-25 (181)
201 3e70_C DPA, signal recognition 91.3 0.64 2.2E-05 52.2 10.1 79 680-758 70-161 (328)
202 3a4m_A L-seryl-tRNA(SEC) kinas 91.3 0.16 5.6E-06 54.7 5.0 36 727-762 5-40 (260)
203 2pbr_A DTMP kinase, thymidylat 91.2 0.16 5.6E-06 51.1 4.7 33 728-760 2-34 (195)
204 2fz4_A DNA repair protein RAD2 91.2 0.37 1.3E-05 51.2 7.7 22 729-750 111-132 (237)
205 1zd8_A GTP:AMP phosphotransfer 91.2 0.11 3.9E-06 54.4 3.5 24 727-750 8-31 (227)
206 1j8m_F SRP54, signal recogniti 91.1 0.62 2.1E-05 51.5 9.6 39 726-764 98-136 (297)
207 1knq_A Gluconate kinase; ALFA/ 91.1 0.18 6E-06 50.4 4.7 32 727-763 9-40 (175)
208 1qf9_A UMP/CMP kinase, protein 91.1 0.14 4.9E-06 51.4 4.1 24 727-750 7-30 (194)
209 4eun_A Thermoresistant glucoki 91.1 0.18 6E-06 51.9 4.8 32 727-763 30-61 (200)
210 3crm_A TRNA delta(2)-isopenten 91.0 0.14 4.6E-06 57.6 4.1 31 728-761 7-37 (323)
211 4b4t_K 26S protease regulatory 91.0 1.7 5.9E-05 50.6 13.5 121 230-375 206-337 (428)
212 1ak2_A Adenylate kinase isoenz 91.0 0.15 5.1E-06 53.8 4.3 24 727-750 17-40 (233)
213 3dl0_A Adenylate kinase; phosp 91.0 0.13 4.5E-06 53.3 3.8 23 728-750 2-24 (216)
214 2xxa_A Signal recognition part 90.9 0.67 2.3E-05 54.1 10.1 40 726-765 100-140 (433)
215 1ukz_A Uridylate kinase; trans 90.9 0.15 5E-06 52.3 4.1 24 727-750 16-39 (203)
216 3be4_A Adenylate kinase; malar 90.9 0.13 4.6E-06 53.6 3.7 24 727-750 6-29 (217)
217 1m7g_A Adenylylsulfate kinase; 90.6 0.18 6.2E-06 52.3 4.4 36 727-762 26-62 (211)
218 1zak_A Adenylate kinase; ATP:A 90.6 0.11 3.6E-06 54.4 2.6 24 727-750 6-29 (222)
219 3umf_A Adenylate kinase; rossm 90.5 0.18 6.3E-06 53.3 4.4 33 727-764 30-62 (217)
220 3foz_A TRNA delta(2)-isopenten 90.3 0.18 6.2E-06 56.3 4.4 33 727-762 11-43 (316)
221 1u94_A RECA protein, recombina 90.3 0.28 9.5E-06 55.8 6.0 36 728-763 65-100 (356)
222 1nn5_A Similar to deoxythymidy 90.3 0.16 5.6E-06 52.1 3.7 24 727-750 10-33 (215)
223 1lv7_A FTSH; alpha/beta domain 90.3 0.91 3.1E-05 48.2 9.7 104 230-352 45-157 (257)
224 2wwf_A Thymidilate kinase, put 90.2 0.16 5.5E-06 52.1 3.7 24 727-750 11-34 (212)
225 1e4v_A Adenylate kinase; trans 90.2 0.17 5.7E-06 52.6 3.8 23 728-750 2-24 (214)
226 2jaq_A Deoxyguanosine kinase; 90.0 0.18 6.1E-06 51.2 3.7 23 728-750 2-24 (205)
227 1d2n_A N-ethylmaleimide-sensit 90.0 1.6 5.6E-05 46.7 11.6 148 209-380 36-196 (272)
228 2vli_A Antibiotic resistance p 89.9 0.16 5.5E-06 50.8 3.2 24 727-750 6-29 (183)
229 2z0h_A DTMP kinase, thymidylat 89.7 0.26 8.9E-06 49.8 4.7 24 728-751 2-25 (197)
230 1xp8_A RECA protein, recombina 89.7 0.29 9.9E-06 55.9 5.5 37 728-764 76-112 (366)
231 2qor_A Guanylate kinase; phosp 89.7 0.17 5.9E-06 52.1 3.3 24 727-750 13-36 (204)
232 3tau_A Guanylate kinase, GMP k 89.6 0.18 6.3E-06 52.3 3.5 24 727-750 9-32 (208)
233 2j37_W Signal recognition part 89.6 0.95 3.3E-05 53.8 10.0 38 726-763 101-138 (504)
234 1g5t_A COB(I)alamin adenosyltr 89.5 0.75 2.6E-05 48.0 8.0 34 728-761 30-63 (196)
235 2v54_A DTMP kinase, thymidylat 89.5 0.19 6.6E-06 51.2 3.5 24 727-750 5-28 (204)
236 3tr0_A Guanylate kinase, GMP k 89.4 0.22 7.5E-06 50.8 3.8 24 727-750 8-31 (205)
237 2v3c_C SRP54, signal recogniti 89.3 0.7 2.4E-05 53.9 8.4 39 727-765 100-138 (432)
238 2xb4_A Adenylate kinase; ATP-b 89.3 0.23 7.8E-06 52.2 3.9 23 728-750 2-24 (223)
239 2j41_A Guanylate kinase; GMP, 89.2 0.2 6.9E-06 51.1 3.4 24 727-750 7-30 (207)
240 3exa_A TRNA delta(2)-isopenten 89.1 0.23 7.8E-06 55.6 3.9 31 728-761 5-35 (322)
241 2ffh_A Protein (FFH); SRP54, s 89.0 1.5 5E-05 51.1 10.9 39 726-764 98-136 (425)
242 3c8u_A Fructokinase; YP_612366 88.7 0.3 1E-05 50.5 4.4 25 727-751 23-47 (208)
243 1fnn_A CDC6P, cell division co 88.7 1.2 4E-05 49.8 9.6 125 209-358 20-171 (389)
244 1odf_A YGR205W, hypothetical 3 88.7 0.61 2.1E-05 51.4 7.0 25 727-751 32-56 (290)
245 1kgd_A CASK, peripheral plasma 88.6 0.26 8.9E-06 49.8 3.7 24 727-750 6-29 (180)
246 1ofh_A ATP-dependent HSL prote 88.4 1 3.5E-05 48.6 8.6 127 209-351 18-174 (310)
247 2px0_A Flagellar biosynthesis 88.3 0.7 2.4E-05 51.0 7.2 39 726-764 105-144 (296)
248 2w0m_A SSO2452; RECA, SSPF, un 88.2 0.31 1.1E-05 50.3 4.0 36 727-762 24-59 (235)
249 1rj9_A FTSY, signal recognitio 88.2 0.61 2.1E-05 51.8 6.7 33 726-758 102-134 (304)
250 3d3q_A TRNA delta(2)-isopenten 88.2 0.28 9.6E-06 55.4 4.0 23 728-750 9-31 (340)
251 3nwj_A ATSK2; P loop, shikimat 88.1 0.41 1.4E-05 51.7 5.0 43 696-750 30-72 (250)
252 2gza_A Type IV secretion syste 87.8 0.67 2.3E-05 52.6 6.8 95 728-832 177-276 (361)
253 2if2_A Dephospho-COA kinase; a 87.8 0.28 9.7E-06 50.2 3.4 21 728-748 3-23 (204)
254 2bdt_A BH3686; alpha-beta prot 87.7 0.29 1E-05 49.5 3.4 23 728-750 4-26 (189)
255 2bbw_A Adenylate kinase 4, AK4 87.7 0.32 1.1E-05 51.6 3.8 24 727-750 28-51 (246)
256 1cke_A CK, MSSA, protein (cyti 87.5 0.36 1.2E-05 50.1 4.1 23 728-750 7-29 (227)
257 1uf9_A TT1252 protein; P-loop, 87.5 0.34 1.2E-05 49.2 3.8 23 727-749 9-31 (203)
258 3ake_A Cytidylate kinase; CMP 87.5 0.36 1.2E-05 49.2 4.0 23 728-750 4-26 (208)
259 3r20_A Cytidylate kinase; stru 87.4 0.44 1.5E-05 51.0 4.7 33 727-764 10-42 (233)
260 2qmh_A HPR kinase/phosphorylas 87.3 0.31 1.1E-05 51.1 3.3 32 727-762 35-66 (205)
261 1w5s_A Origin recognition comp 87.3 2.3 7.9E-05 47.9 11.0 141 209-359 25-192 (412)
262 2dr3_A UPF0273 protein PH0284; 87.1 0.49 1.7E-05 49.4 4.8 37 727-763 24-60 (247)
263 3eph_A TRNA isopentenyltransfe 86.9 0.39 1.3E-05 55.5 4.1 31 728-761 4-34 (409)
264 3cf0_A Transitional endoplasmi 86.8 1.1 3.7E-05 49.2 7.6 120 229-373 48-178 (301)
265 3asz_A Uridine kinase; cytidin 86.8 0.39 1.3E-05 49.4 3.7 24 727-750 7-30 (211)
266 2ga8_A Hypothetical 39.9 kDa p 86.8 0.64 2.2E-05 52.9 5.7 23 728-750 26-48 (359)
267 3n70_A Transport activator; si 86.7 1.5 5.2E-05 42.5 7.8 108 209-354 4-114 (145)
268 1vht_A Dephospho-COA kinase; s 86.6 0.44 1.5E-05 49.4 4.1 22 727-748 5-26 (218)
269 4e22_A Cytidylate kinase; P-lo 86.6 0.54 1.8E-05 50.4 4.9 33 727-764 28-60 (252)
270 2grj_A Dephospho-COA kinase; T 86.4 0.45 1.6E-05 49.2 4.0 34 726-764 12-45 (192)
271 2oap_1 GSPE-2, type II secreti 86.4 1.4 4.9E-05 52.4 8.8 95 728-833 262-358 (511)
272 3pvs_A Replication-associated 86.4 1.3 4.4E-05 51.8 8.3 106 210-352 30-141 (447)
273 3a00_A Guanylate kinase, GMP k 86.1 0.36 1.2E-05 49.0 3.0 23 728-750 3-25 (186)
274 4eaq_A DTMP kinase, thymidylat 86.1 0.72 2.5E-05 48.8 5.5 26 726-751 26-51 (229)
275 1jjv_A Dephospho-COA kinase; P 86.0 0.4 1.4E-05 49.2 3.3 21 728-748 4-24 (206)
276 1htw_A HI0065; nucleotide-bind 86.0 0.62 2.1E-05 46.6 4.7 27 727-754 34-60 (158)
277 1uj2_A Uridine-cytidine kinase 86.0 0.54 1.8E-05 50.2 4.4 24 727-750 23-46 (252)
278 1lvg_A Guanylate kinase, GMP k 85.9 0.41 1.4E-05 49.3 3.4 23 728-750 6-28 (198)
279 3tqc_A Pantothenate kinase; bi 85.7 2 6.8E-05 48.1 9.1 26 726-751 92-117 (321)
280 1w4r_A Thymidine kinase; type 85.6 0.82 2.8E-05 47.6 5.4 33 728-761 22-55 (195)
281 3cmu_A Protein RECA, recombina 85.2 1.2 4E-05 60.9 8.0 38 727-764 1082-1119(2050)
282 3t15_A Ribulose bisphosphate c 85.2 1.5 5.2E-05 48.0 7.7 73 231-320 37-114 (293)
283 2cvh_A DNA repair and recombin 85.2 0.63 2.2E-05 47.7 4.4 34 727-763 21-54 (220)
284 1n0w_A DNA repair protein RAD5 85.0 0.77 2.6E-05 47.8 5.0 38 727-764 25-68 (243)
285 1sq5_A Pantothenate kinase; P- 85.0 0.85 2.9E-05 50.4 5.6 38 727-764 81-120 (308)
286 1x6v_B Bifunctional 3'-phospho 84.9 0.64 2.2E-05 56.7 4.9 35 727-761 53-87 (630)
287 4b3f_X DNA-binding protein smu 84.7 1.2 4.2E-05 54.4 7.3 29 728-756 207-235 (646)
288 2ehv_A Hypothetical protein PH 84.3 0.71 2.4E-05 48.3 4.4 22 727-748 31-52 (251)
289 2qt1_A Nicotinamide riboside k 84.3 0.45 1.5E-05 48.9 2.8 35 726-764 21-55 (207)
290 1gtv_A TMK, thymidylate kinase 84.3 0.3 1E-05 50.1 1.4 23 728-750 2-24 (214)
291 1znw_A Guanylate kinase, GMP k 84.3 0.59 2E-05 48.2 3.7 24 727-750 21-44 (207)
292 2iut_A DNA translocase FTSK; n 84.2 2 7E-05 51.7 8.7 37 728-764 216-256 (574)
293 4a74_A DNA repair and recombin 84.1 0.84 2.9E-05 47.1 4.8 24 727-750 26-49 (231)
294 3ney_A 55 kDa erythrocyte memb 83.9 0.64 2.2E-05 48.5 3.7 24 727-750 20-43 (197)
295 1m8p_A Sulfate adenylyltransfe 83.9 0.76 2.6E-05 55.6 4.9 38 726-763 396-434 (573)
296 2jeo_A Uridine-cytidine kinase 83.8 0.71 2.4E-05 49.0 4.1 24 727-750 26-49 (245)
297 2h92_A Cytidylate kinase; ross 83.8 0.62 2.1E-05 48.1 3.6 24 727-750 4-27 (219)
298 1ls1_A Signal recognition part 83.8 3.8 0.00013 45.0 10.1 39 726-764 98-136 (295)
299 4gp7_A Metallophosphoesterase; 83.7 0.83 2.8E-05 45.8 4.4 19 727-745 10-28 (171)
300 1a7j_A Phosphoribulokinase; tr 83.7 0.46 1.6E-05 52.3 2.7 39 727-765 6-44 (290)
301 3p32_A Probable GTPase RV1496/ 83.6 1.9 6.6E-05 48.5 7.8 37 727-763 80-116 (355)
302 1ltq_A Polynucleotide kinase; 83.5 0.64 2.2E-05 50.6 3.7 32 728-763 4-35 (301)
303 1z6g_A Guanylate kinase; struc 83.3 0.62 2.1E-05 48.8 3.3 23 728-750 25-47 (218)
304 3kta_A Chromosome segregation 83.2 0.75 2.6E-05 46.0 3.9 26 728-753 28-53 (182)
305 1ex7_A Guanylate kinase; subst 83.1 0.63 2.2E-05 48.0 3.3 23 728-750 3-25 (186)
306 4edh_A DTMP kinase, thymidylat 82.8 1.2 4E-05 46.8 5.2 27 727-753 7-33 (213)
307 1s96_A Guanylate kinase, GMP k 82.6 0.76 2.6E-05 48.5 3.7 25 726-750 16-40 (219)
308 3e2i_A Thymidine kinase; Zn-bi 82.0 1.7 5.9E-05 46.0 6.1 99 727-832 29-128 (219)
309 2ce7_A Cell division protein F 81.9 7.1 0.00024 46.0 12.0 105 231-355 50-163 (476)
310 3lnc_A Guanylate kinase, GMP k 81.9 0.51 1.7E-05 49.5 2.0 24 727-750 28-52 (231)
311 1q3t_A Cytidylate kinase; nucl 81.8 0.99 3.4E-05 47.5 4.3 25 726-750 16-40 (236)
312 1z6t_A APAF-1, apoptotic prote 81.8 1.4 4.7E-05 52.8 6.0 45 693-748 125-169 (591)
313 3aez_A Pantothenate kinase; tr 81.5 0.95 3.3E-05 50.4 4.2 26 726-751 90-115 (312)
314 2orv_A Thymidine kinase; TP4A 81.0 4.1 0.00014 43.6 8.6 94 727-830 20-113 (234)
315 3zvl_A Bifunctional polynucleo 80.9 0.86 2.9E-05 52.7 3.7 32 727-763 259-290 (416)
316 2f6r_A COA synthase, bifunctio 80.8 0.98 3.3E-05 49.3 3.9 22 727-748 76-97 (281)
317 1svm_A Large T antigen; AAA+ f 80.8 1 3.5E-05 51.6 4.1 23 728-750 171-193 (377)
318 3cmw_A Protein RECA, recombina 80.6 1.4 4.7E-05 59.4 5.9 90 727-818 733-823 (1706)
319 2ocp_A DGK, deoxyguanosine kin 80.5 0.92 3.2E-05 47.9 3.5 24 727-750 3-26 (241)
320 3v9p_A DTMP kinase, thymidylat 80.4 0.93 3.2E-05 48.2 3.4 25 727-751 26-50 (227)
321 1g8f_A Sulfate adenylyltransfe 80.2 1.3 4.6E-05 52.6 5.1 26 726-751 395-420 (511)
322 1cr0_A DNA primase/helicase; R 80.2 1.4 4.6E-05 48.1 4.8 35 728-762 37-72 (296)
323 1p5z_B DCK, deoxycytidine kina 80.1 0.49 1.7E-05 50.8 1.2 25 726-750 24-48 (263)
324 1nlf_A Regulatory protein REPA 79.8 1.6 5.3E-05 47.3 5.0 25 727-751 31-55 (279)
325 3hjn_A DTMP kinase, thymidylat 79.5 1.4 4.7E-05 45.6 4.3 31 728-758 2-32 (197)
326 2gks_A Bifunctional SAT/APS ki 79.5 1.4 4.7E-05 53.0 4.9 36 727-762 373-408 (546)
327 1yrb_A ATP(GTP)binding protein 79.3 2.4 8.4E-05 44.7 6.4 40 724-764 12-51 (262)
328 3io5_A Recombination and repai 79.2 1.2 4.2E-05 49.9 4.0 37 728-764 30-68 (333)
329 2wsm_A Hydrogenase expression/ 78.9 2.8 9.5E-05 43.0 6.5 25 728-752 32-56 (221)
330 1xjc_A MOBB protein homolog; s 78.9 1.8 6.3E-05 43.9 4.9 34 728-761 6-39 (169)
331 2qby_B CDC6 homolog 3, cell di 78.7 10 0.00035 42.1 11.6 126 209-352 23-171 (384)
332 2z43_A DNA repair and recombin 78.6 1.5 5.2E-05 48.7 4.7 38 727-764 108-151 (324)
333 2v9p_A Replication protein E1; 78.6 1.3 4.3E-05 49.4 3.9 23 728-750 128-150 (305)
334 1bif_A 6-phosphofructo-2-kinas 78.6 1.6 5.6E-05 51.1 5.1 35 727-761 40-74 (469)
335 1v5w_A DMC1, meiotic recombina 78.4 2.2 7.6E-05 47.9 5.9 38 727-764 123-166 (343)
336 3cio_A ETK, tyrosine-protein k 78.4 3.2 0.00011 45.7 7.1 37 728-764 106-143 (299)
337 3bh0_A DNAB-like replicative h 78.0 2 6.8E-05 47.6 5.4 37 727-763 69-105 (315)
338 3bfv_A CAPA1, CAPB2, membrane 77.9 3.5 0.00012 44.7 7.1 37 728-764 84-121 (271)
339 3tmk_A Thymidylate kinase; pho 77.9 1.4 4.7E-05 46.5 3.7 24 727-750 6-29 (216)
340 3ld9_A DTMP kinase, thymidylat 77.8 1.5 5.2E-05 46.4 4.1 26 726-751 21-46 (223)
341 2axn_A 6-phosphofructo-2-kinas 77.8 1.6 5.4E-05 52.1 4.7 24 727-750 36-59 (520)
342 1njg_A DNA polymerase III subu 77.6 9.3 0.00032 38.6 10.0 42 209-253 26-71 (250)
343 2zts_A Putative uncharacterize 77.2 1.8 6E-05 45.2 4.4 36 727-762 31-67 (251)
344 3fdi_A Uncharacterized protein 77.2 1.6 5.5E-05 45.2 4.0 24 727-750 7-30 (201)
345 3lv8_A DTMP kinase, thymidylat 76.8 1.4 4.9E-05 47.0 3.6 26 727-752 28-53 (236)
346 3cr8_A Sulfate adenylyltranfer 76.8 1.6 5.5E-05 52.5 4.4 26 727-752 370-395 (552)
347 1f2t_A RAD50 ABC-ATPase; DNA d 76.5 1.8 6.3E-05 42.5 4.0 27 727-753 24-50 (149)
348 4tmk_A Protein (thymidylate ki 75.9 1.6 5.6E-05 45.8 3.6 26 727-752 4-29 (213)
349 3thx_B DNA mismatch repair pro 75.3 4.3 0.00015 51.7 7.9 24 727-750 674-697 (918)
350 4hlc_A DTMP kinase, thymidylat 75.3 1.6 5.6E-05 45.4 3.5 24 728-751 4-27 (205)
351 3u61_B DNA polymerase accessor 75.2 11 0.00039 41.0 10.5 111 209-352 29-143 (324)
352 3gmt_A Adenylate kinase; ssgci 75.1 1.7 5.7E-05 46.4 3.5 32 727-763 9-40 (230)
353 3pfi_A Holliday junction ATP-d 74.7 13 0.00044 40.8 10.8 83 209-318 32-119 (338)
354 2www_A Methylmalonic aciduria 74.6 6.5 0.00022 44.2 8.4 27 726-752 74-100 (349)
355 4ag6_A VIRB4 ATPase, type IV s 74.3 2.3 8E-05 48.3 4.7 36 728-763 37-72 (392)
356 3tif_A Uncharacterized ABC tra 74.2 1.6 5.4E-05 46.5 3.1 24 727-750 32-55 (235)
357 3ug7_A Arsenical pump-driving 74.2 3 0.0001 46.9 5.6 38 727-764 27-64 (349)
358 2vp4_A Deoxynucleoside kinase; 73.7 1.2 4.1E-05 46.8 2.0 25 725-749 19-43 (230)
359 3fkq_A NTRC-like two-domain pr 73.7 5.8 0.0002 44.9 7.8 38 727-764 145-182 (373)
360 2f1r_A Molybdopterin-guanine d 72.9 1.4 4.7E-05 44.7 2.1 25 728-752 4-28 (171)
361 1b0u_A Histidine permease; ABC 72.8 1.8 6.1E-05 46.8 3.1 24 727-750 33-56 (262)
362 2cbz_A Multidrug resistance-as 72.7 1.8 6.2E-05 46.0 3.1 34 796-830 138-171 (237)
363 1np6_A Molybdopterin-guanine d 72.6 3.2 0.00011 42.1 4.8 24 728-751 8-31 (174)
364 1c9k_A COBU, adenosylcobinamid 72.4 2 6.9E-05 44.1 3.2 32 729-764 2-33 (180)
365 2onk_A Molybdate/tungstate ABC 72.2 2 6.8E-05 45.9 3.3 24 728-751 26-49 (240)
366 1pzn_A RAD51, DNA repair and r 72.2 2.9 0.0001 47.1 4.8 37 727-763 132-174 (349)
367 2pcj_A ABC transporter, lipopr 71.8 1.6 5.5E-05 46.0 2.4 24 727-750 31-54 (224)
368 2dhr_A FTSH; AAA+ protein, hex 71.8 17 0.00058 43.0 11.4 125 231-380 65-201 (499)
369 3b85_A Phosphate starvation-in 71.7 1.9 6.4E-05 45.1 2.9 22 728-749 24-45 (208)
370 1mv5_A LMRA, multidrug resista 71.6 2.1 7E-05 45.7 3.2 25 727-751 29-53 (243)
371 2ged_A SR-beta, signal recogni 71.5 3.7 0.00013 40.8 5.0 24 727-750 49-72 (193)
372 1lw7_A Transcriptional regulat 71.4 2.1 7.2E-05 48.3 3.4 24 727-750 171-194 (365)
373 2zu0_C Probable ATP-dependent 71.4 2.3 8E-05 46.0 3.6 24 727-750 47-70 (267)
374 2p67_A LAO/AO transport system 71.4 7 0.00024 43.7 7.7 30 727-756 57-86 (341)
375 2olj_A Amino acid ABC transpor 71.1 2.1 7.1E-05 46.5 3.1 24 727-750 51-74 (263)
376 3gfo_A Cobalt import ATP-bindi 71.0 1.8 6.3E-05 47.2 2.7 24 727-750 35-58 (275)
377 3la6_A Tyrosine-protein kinase 70.9 8.1 0.00028 42.2 7.9 37 728-764 94-131 (286)
378 2d2e_A SUFC protein; ABC-ATPas 70.5 2.2 7.6E-05 45.7 3.2 23 727-749 30-52 (250)
379 3tqf_A HPR(Ser) kinase; transf 70.4 2.5 8.5E-05 43.4 3.3 23 727-749 17-39 (181)
380 2hf9_A Probable hydrogenase ni 70.3 7.4 0.00025 39.8 7.1 27 727-753 39-65 (226)
381 3qks_A DNA double-strand break 70.3 2.9 0.0001 43.2 3.9 26 727-752 24-49 (203)
382 1ji0_A ABC transporter; ATP bi 70.3 2 6.7E-05 45.8 2.7 24 727-750 33-56 (240)
383 1g6h_A High-affinity branched- 70.2 2 6.8E-05 46.3 2.7 25 727-751 34-58 (257)
384 1oix_A RAS-related protein RAB 70.0 2.2 7.5E-05 43.0 2.9 25 727-751 30-54 (191)
385 1sxj_B Activator 1 37 kDa subu 70.0 15 0.0005 39.6 9.7 117 209-352 24-144 (323)
386 2ghi_A Transport protein; mult 69.8 2.3 7.7E-05 46.0 3.1 24 727-750 47-70 (260)
387 3vkw_A Replicase large subunit 69.6 7.7 0.00026 45.3 7.7 26 805-831 235-260 (446)
388 2f9l_A RAB11B, member RAS onco 69.6 2.8 9.5E-05 42.4 3.5 25 727-751 6-30 (199)
389 1nrj_B SR-beta, signal recogni 69.5 3 0.0001 42.6 3.8 25 727-751 13-37 (218)
390 2ixe_A Antigen peptide transpo 69.4 2.3 8E-05 46.2 3.1 25 727-751 46-70 (271)
391 1vpl_A ABC transporter, ATP-bi 69.4 2.4 8.1E-05 45.8 3.1 24 727-750 42-65 (256)
392 2i1q_A DNA repair and recombin 69.3 3 0.0001 46.0 4.1 23 727-749 99-121 (322)
393 4g1u_C Hemin import ATP-bindin 69.3 2.1 7.3E-05 46.4 2.7 25 727-751 38-62 (266)
394 2ff7_A Alpha-hemolysin translo 69.0 2.2 7.4E-05 45.8 2.7 25 727-751 36-60 (247)
395 2yz2_A Putative ABC transporte 69.0 2.4 8.2E-05 45.9 3.1 24 727-750 34-57 (266)
396 1sgw_A Putative ABC transporte 69.0 2 6.9E-05 45.1 2.4 23 728-750 37-59 (214)
397 2dyk_A GTP-binding protein; GT 69.0 2.8 9.5E-05 40.1 3.2 22 728-749 3-24 (161)
398 3hdt_A Putative kinase; struct 68.9 3.4 0.00011 43.7 4.1 24 727-750 15-38 (223)
399 3fvq_A Fe(3+) IONS import ATP- 68.7 2.5 8.7E-05 48.0 3.3 25 727-751 31-55 (359)
400 3qf7_A RAD50; ABC-ATPase, ATPa 68.5 3.5 0.00012 46.8 4.4 27 728-754 25-51 (365)
401 2r6a_A DNAB helicase, replicat 68.4 4.1 0.00014 47.4 5.1 36 727-762 204-240 (454)
402 2qi9_C Vitamin B12 import ATP- 68.4 2.3 7.9E-05 45.7 2.7 25 727-751 27-51 (249)
403 4a1f_A DNAB helicase, replicat 68.3 4 0.00014 46.0 4.7 35 728-762 48-82 (338)
404 2pze_A Cystic fibrosis transme 68.1 2.4 8.1E-05 44.8 2.7 33 796-829 141-173 (229)
405 3sop_A Neuronal-specific septi 68.1 2.7 9.3E-05 45.6 3.3 25 727-751 3-27 (270)
406 2qen_A Walker-type ATPase; unk 68.0 8.3 0.00028 42.0 7.2 37 209-250 15-54 (350)
407 1tf7_A KAIC; homohexamer, hexa 67.8 4.3 0.00015 48.2 5.2 36 727-762 282-317 (525)
408 2it1_A 362AA long hypothetical 67.8 3 0.0001 47.4 3.6 25 727-751 30-54 (362)
409 2ihy_A ABC transporter, ATP-bi 67.8 2.4 8.2E-05 46.4 2.7 23 728-750 49-71 (279)
410 2nq2_C Hypothetical ABC transp 67.6 2.4 8.2E-05 45.6 2.7 25 727-751 32-56 (253)
411 2yyz_A Sugar ABC transporter, 67.3 3 0.0001 47.3 3.6 25 727-751 30-54 (359)
412 2q6t_A DNAB replication FORK h 67.3 4.2 0.00014 47.2 4.9 37 727-763 201-238 (444)
413 2gk6_A Regulator of nonsense t 67.3 4.4 0.00015 49.3 5.2 25 728-752 197-221 (624)
414 3kjh_A CO dehydrogenase/acetyl 67.3 4.2 0.00014 42.2 4.4 36 729-764 3-38 (254)
415 3rlf_A Maltose/maltodextrin im 67.1 3.1 0.00011 47.6 3.6 25 727-751 30-54 (381)
416 3lda_A DNA repair protein RAD5 67.1 4.1 0.00014 47.0 4.6 37 727-763 179-221 (400)
417 1z2a_A RAS-related protein RAB 66.9 3.2 0.00011 39.9 3.2 24 727-750 6-29 (168)
418 1v43_A Sugar-binding transport 66.8 3.2 0.00011 47.4 3.6 25 727-751 38-62 (372)
419 1tq4_A IIGP1, interferon-induc 66.7 5.9 0.0002 45.8 5.9 59 678-750 34-93 (413)
420 3d31_A Sulfate/molybdate ABC t 66.7 2.8 9.5E-05 47.4 3.1 25 727-751 27-51 (348)
421 3thx_A DNA mismatch repair pro 66.5 8.2 0.00028 49.2 7.6 23 727-749 663-685 (934)
422 1e9r_A Conjugal transfer prote 66.4 3.5 0.00012 47.4 4.0 38 727-764 54-91 (437)
423 2ce2_X GTPase HRAS; signaling 66.4 3 0.0001 39.7 2.9 24 727-750 4-27 (166)
424 3bgw_A DNAB-like replicative h 66.3 4.3 0.00015 47.3 4.7 37 727-763 198-234 (444)
425 1z47_A CYSA, putative ABC-tran 66.3 3 0.0001 47.4 3.2 25 727-751 42-66 (355)
426 1p6x_A Thymidine kinase; P-loo 66.3 2.3 8E-05 47.8 2.3 25 727-751 8-32 (334)
427 3hws_A ATP-dependent CLP prote 66.3 10 0.00034 42.5 7.6 113 209-339 18-155 (363)
428 2fna_A Conserved hypothetical 66.2 14 0.00048 40.2 8.6 36 209-251 16-54 (357)
429 2o8b_B DNA mismatch repair pro 66.2 7.2 0.00025 50.3 7.1 22 727-748 790-811 (1022)
430 2wji_A Ferrous iron transport 66.1 3.5 0.00012 40.2 3.3 23 727-749 4-26 (165)
431 2zej_A Dardarin, leucine-rich 66.1 2.7 9.3E-05 41.9 2.6 21 728-748 4-24 (184)
432 2gj8_A MNME, tRNA modification 65.9 3.3 0.00011 40.9 3.2 22 727-748 5-26 (172)
433 1kao_A RAP2A; GTP-binding prot 65.8 3.5 0.00012 39.4 3.2 23 727-749 4-26 (167)
434 2qm8_A GTPase/ATPase; G protei 65.8 5.4 0.00019 44.6 5.2 26 727-752 56-81 (337)
435 2nzj_A GTP-binding protein REM 65.7 3.3 0.00011 40.2 3.1 22 727-748 5-26 (175)
436 3zq6_A Putative arsenical pump 65.7 4.8 0.00016 44.7 4.7 38 727-764 15-52 (324)
437 1u8z_A RAS-related protein RAL 65.4 3.5 0.00012 39.4 3.2 23 727-749 5-27 (168)
438 1q57_A DNA primase/helicase; d 65.2 4.7 0.00016 47.5 4.7 36 728-763 244-280 (503)
439 2wjg_A FEOB, ferrous iron tran 65.0 3.4 0.00011 40.9 3.0 22 727-748 8-29 (188)
440 4dsu_A GTPase KRAS, isoform 2B 64.8 3.8 0.00013 40.3 3.3 24 727-750 5-28 (189)
441 1ek0_A Protein (GTP-binding pr 64.7 3.7 0.00013 39.4 3.2 24 727-750 4-27 (170)
442 3iqw_A Tail-anchored protein t 64.7 6.7 0.00023 44.0 5.7 38 727-764 17-54 (334)
443 3end_A Light-independent proto 64.7 5.2 0.00018 43.6 4.7 37 728-764 43-79 (307)
444 3nh6_A ATP-binding cassette SU 64.6 2.2 7.6E-05 47.3 1.7 24 727-750 81-104 (306)
445 1z0j_A RAB-22, RAS-related pro 64.4 3.8 0.00013 39.4 3.2 24 727-750 7-30 (170)
446 1g29_1 MALK, maltose transport 64.3 3.4 0.00012 47.1 3.2 25 727-751 30-54 (372)
447 2pjz_A Hypothetical protein ST 64.0 3.4 0.00012 44.8 3.0 35 796-831 139-173 (263)
448 1upt_A ARL1, ADP-ribosylation 63.9 4.9 0.00017 38.7 3.9 23 727-749 8-30 (171)
449 2npi_A Protein CLP1; CLP1-PCF1 63.7 2.9 9.8E-05 49.1 2.5 24 728-751 140-163 (460)
450 3q85_A GTP-binding protein REM 63.5 3.8 0.00013 39.5 3.0 20 728-747 4-23 (169)
451 2woo_A ATPase GET3; tail-ancho 63.5 6.9 0.00024 43.6 5.5 38 727-764 20-57 (329)
452 1ky3_A GTP-binding protein YPT 63.5 4.4 0.00015 39.4 3.5 23 727-749 9-31 (182)
453 1z08_A RAS-related protein RAB 63.5 4.1 0.00014 39.3 3.2 23 727-749 7-29 (170)
454 2erx_A GTP-binding protein DI- 63.4 3.9 0.00013 39.3 3.1 22 727-748 4-25 (172)
455 3bos_A Putative DNA replicatio 63.4 17 0.00058 37.0 8.1 79 213-320 38-119 (242)
456 2lkc_A Translation initiation 63.0 4.9 0.00017 39.1 3.7 22 727-748 9-30 (178)
457 1oxx_K GLCV, glucose, ABC tran 63.0 2.9 9.9E-05 47.3 2.3 24 727-750 32-55 (353)
458 1wms_A RAB-9, RAB9, RAS-relate 62.9 4.2 0.00014 39.6 3.2 23 727-749 8-30 (177)
459 2bbs_A Cystic fibrosis transme 62.9 3.4 0.00012 45.4 2.8 33 796-829 170-202 (290)
460 1r2q_A RAS-related protein RAB 62.9 4.2 0.00014 39.0 3.2 23 727-749 7-29 (170)
461 3q72_A GTP-binding protein RAD 62.8 3.4 0.00012 39.7 2.5 21 727-747 3-23 (166)
462 1r8s_A ADP-ribosylation factor 62.8 5.2 0.00018 38.4 3.8 24 728-751 2-25 (164)
463 1c1y_A RAS-related protein RAP 62.7 4.3 0.00015 38.9 3.2 23 727-749 4-26 (167)
464 3sfz_A APAF-1, apoptotic pepti 62.6 4.9 0.00017 51.9 4.7 46 693-749 125-170 (1249)
465 3auy_A DNA double-strand break 62.6 4.6 0.00016 45.6 3.9 27 727-753 26-52 (371)
466 1g16_A RAS-related protein SEC 62.5 3.9 0.00013 39.3 2.9 23 727-749 4-26 (170)
467 3gd7_A Fusion complex of cysti 62.5 3.9 0.00013 46.9 3.3 35 796-831 166-200 (390)
468 3bc1_A RAS-related protein RAB 62.4 4.2 0.00014 40.0 3.2 24 727-750 12-35 (195)
469 3h1t_A Type I site-specific re 62.3 6.8 0.00023 46.9 5.5 44 695-752 181-224 (590)
470 1ihu_A Arsenical pump-driving 62.1 6.4 0.00022 47.3 5.2 37 727-763 9-45 (589)
471 1m7b_A RND3/RHOE small GTP-bin 62.0 4.3 0.00015 40.2 3.2 25 727-751 8-32 (184)
472 3con_A GTPase NRAS; structural 62.0 4.3 0.00015 40.2 3.2 24 726-749 21-44 (190)
473 3clv_A RAB5 protein, putative; 61.8 5.6 0.00019 39.3 4.0 23 727-749 8-30 (208)
474 2hxs_A RAB-26, RAS-related pro 61.8 4.9 0.00017 39.1 3.5 23 727-749 7-29 (178)
475 3tw8_B RAS-related protein RAB 61.6 4.1 0.00014 39.6 2.9 22 727-748 10-31 (181)
476 2fn4_A P23, RAS-related protei 61.5 4.2 0.00014 39.5 2.9 24 727-750 10-33 (181)
477 1z0f_A RAB14, member RAS oncog 61.5 4.6 0.00016 39.2 3.2 24 727-750 16-39 (179)
478 1hqc_A RUVB; extended AAA-ATPa 61.4 20 0.00067 38.8 8.6 84 209-318 15-103 (324)
479 2a9k_A RAS-related protein RAL 60.9 4.7 0.00016 39.4 3.2 23 727-749 19-41 (187)
480 1pui_A ENGB, probable GTP-bind 60.7 3 0.0001 42.2 1.8 22 727-748 27-48 (210)
481 2oil_A CATX-8, RAS-related pro 60.7 4.8 0.00016 40.1 3.2 24 727-750 26-49 (193)
482 1cp2_A CP2, nitrogenase iron p 60.4 7.4 0.00025 41.2 4.8 37 729-765 4-40 (269)
483 3qkt_A DNA double-strand break 60.2 5.7 0.0002 44.3 4.1 26 727-752 24-49 (339)
484 1qhl_A Protein (cell division 60.0 3.2 0.00011 44.0 1.9 27 729-755 30-56 (227)
485 2chq_A Replication factor C sm 60.0 14 0.00047 39.8 7.0 117 209-352 20-139 (319)
486 2y8e_A RAB-protein 6, GH09086P 59.9 4.4 0.00015 39.3 2.7 23 727-749 15-37 (179)
487 1svi_A GTP-binding protein YSX 59.9 4.9 0.00017 39.9 3.1 22 727-748 24-45 (195)
488 1ksh_A ARF-like protein 2; sma 59.5 5.5 0.00019 39.3 3.4 21 727-747 19-39 (186)
489 2atv_A RERG, RAS-like estrogen 59.5 6.1 0.00021 39.5 3.8 23 727-749 29-51 (196)
490 3io3_A DEHA2D07832P; chaperone 59.5 8.3 0.00028 43.5 5.2 38 727-764 19-58 (348)
491 1iqp_A RFCS; clamp loader, ext 59.4 18 0.00061 39.0 7.8 117 209-352 28-147 (327)
492 2efe_B Small GTP-binding prote 59.4 5.2 0.00018 39.0 3.2 23 727-749 13-35 (181)
493 2wjy_A Regulator of nonsense t 59.3 7.5 0.00026 48.8 5.3 25 728-752 373-397 (800)
494 3kkq_A RAS-related protein M-R 59.3 4.9 0.00017 39.4 3.0 25 726-750 18-42 (183)
495 3t1o_A Gliding protein MGLA; G 59.2 5.2 0.00018 39.5 3.2 25 726-750 14-38 (198)
496 2bme_A RAB4A, RAS-related prot 59.2 4.8 0.00016 39.6 2.9 24 727-750 11-34 (186)
497 3tui_C Methionine import ATP-b 59.1 5.4 0.00019 45.4 3.6 25 727-751 55-79 (366)
498 1ojl_A Transcriptional regulat 59.1 11 0.00038 41.3 6.1 42 209-251 5-49 (304)
499 1zd9_A ADP-ribosylation factor 58.9 5.5 0.00019 39.7 3.3 27 724-750 20-46 (188)
500 1mh1_A RAC1; GTP-binding, GTPa 58.8 5.4 0.00018 39.0 3.2 24 727-750 6-29 (186)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=7.6e-61 Score=605.69 Aligned_cols=792 Identities=18% Similarity=0.212 Sum_probs=506.8
Q ss_pred hhcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhccCCCCCC
Q 001355 10 QCLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFDRLPSSKS 89 (1093)
Q Consensus 10 q~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~rlp~~~~ 89 (1093)
..||++|..||..|+.+|+++||+++||.|++.+||..+.|+++.++.+++.+ ..+|+..+...|+++|+..+
T Consensus 4 ~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd-------~~~l~~~l~~~l~~~p~~~~ 76 (854)
T 1qvr_A 4 ERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGAD-------PKALKELQERELARLPKVEG 76 (854)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSC-------HHHHHHHHHHHHHTSCCCCG
T ss_pred hhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCC-------HHHHHHHHHHHHhhCCCCCC
Confidence 47999999999999999999999999999999999999999999999999843 67899999999999998754
Q ss_pred C-CCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCchhhhhhcccCCCcHHHHHhhc
Q 001355 90 V-EFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDPMASRVFGEAGFLSRDIKLAII 168 (1093)
Q Consensus 90 ~-~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp~vsrv~~eagf~s~~vk~~i~ 168 (1093)
+ ..|++|+.+..+|++|+.+.++..++ +|..+||+++||+++.. + ++..+++.++.
T Consensus 77 ~~~~~~~S~~~~~vL~~A~~~a~~~g~~----------------~I~~ehlLlall~~~~~--~-----~~~~~~~~~~~ 133 (854)
T 1qvr_A 77 AEVGQYLTSRLSGALNRAEGLMEELKDR----------------YVAVDTLVLALAEATPG--L-----PGLEALKGALK 133 (854)
T ss_dssp GGTTCEECHHHHHHHHHHHHHHHTTTCS----------------SCCHHHHHHHHHHHSTT--S-----CCHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCCc----------------EeeHHHHHHHHHhcccc--c-----CCHHHHHHHHH
Confidence 3 57999999999999999887765433 79999999999987752 1 89999999998
Q ss_pred cCCCCCCCCCCCCCCC-C---CccccCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhhcccccCCCCcEEeccchhh--
Q 001355 169 QPSVTQFPPRLSLTRC-P---PIFLYNLTDSFPGRAGLKLPFGPDDVDENCRRIGEVLAGRDEKKGKNPLLVGVCANS-- 242 (1093)
Q Consensus 169 ~~~~~~~~~~~~~~~~-~---~~~~~n~~~~~~~~~~~~~p~~~~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~-- 242 (1093)
+....... ....... . ..|..|+++. ++.+..+|+ +||++++++++++|.| ++++|++|+|++|+|
T Consensus 134 ~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~~--~r~~~ld~v--iGr~~~i~~l~~~l~~---~~~~~vlL~G~pG~GKT 205 (854)
T 1qvr_A 134 ELRGGRTV-QTEHAESTYNALEQYGIDLTRL--AAEGKLDPV--IGRDEEIRRVIQILLR---RTKNNPVLIGEPGVGKT 205 (854)
T ss_dssp SSCSCCSS-CSSCCCCCCSHHHHHEEEHHHH--HHTTCSCCC--CSCHHHHHHHHHHHHC---SSCCCCEEEECTTSCHH
T ss_pred Hhcccccc-ccccccccchhHHHHHHhHHHH--HhcCCCccc--CCcHHHHHHHHHHHhc---CCCCceEEEcCCCCCHH
Confidence 76433211 0010011 1 1455566542 355678888 6999999999999999 999999999999998
Q ss_pred -HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCC
Q 001355 243 -ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDS 321 (1093)
Q Consensus 243 -a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~ 321 (1093)
.+++++.++..+ ++|..|++.+++.++ ++.+++|..++++++.+++.+...+... ++++||||||+|++++.+
T Consensus 206 ~la~~la~~l~~~---~~p~~l~~~~~~~l~--~~~l~~g~~~~g~~~~~l~~~~~~~~~~-~~~~iL~IDEi~~l~~~~ 279 (854)
T 1qvr_A 206 AIVEGLAQRIVKG---DVPEGLKGKRIVSLQ--MGSLLAGAKYRGEFEERLKAVIQEVVQS-QGEVILFIDELHTVVGAG 279 (854)
T ss_dssp HHHHHHHHHHHHT---CSCTTSTTCEEEEEC--C-----------CHHHHHHHHHHHHHTT-CSSEEEEECCC-------
T ss_pred HHHHHHHHHHhcC---CCchhhcCCeEEEee--hHHhhccCccchHHHHHHHHHHHHHHhc-CCCeEEEEecHHHHhccC
Confidence 499999999885 899999999999999 9999999999999999999999988864 678999999999999887
Q ss_pred CcchHHHHHHHHHHhhhcCCCCCcEEEEEecccHHHHHhhhhcCCCCCCCCcceeeeccCCCC-----CCCcccC----C
Q 001355 322 VSTEAARFVVSQLTSLLKSGNGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDLQLLPIHWKSS-----LMGSFVP----F 392 (1093)
Q Consensus 322 ~~~~~~~~~v~el~~Ll~~~~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~Lq~v~i~~~~s-----l~~s~~~----~ 392 (1093)
..++..+. .+.+..++. +|++++||+ ||+.+|++ +..+|+|.++|+. |.|++-+. +...+.. .
T Consensus 280 ~~~g~~~~-~~~L~~~l~---~~~i~~I~a-t~~~~~~~-~~~d~aL~rRf~~--i~l~~p~~~e~~~iL~~~~~~~~~~ 351 (854)
T 1qvr_A 280 KAEGAVDA-GNMLKPALA---RGELRLIGA-TTLDEYRE-IEKDPALERRFQP--VYVDEPTVEETISILRGLKEKYEVH 351 (854)
T ss_dssp -------------HHHHH---TTCCCEEEE-ECHHHHHH-HTTCTTTCSCCCC--EEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred CccchHHH-HHHHHHHHh---CCCeEEEEe-cCchHHhh-hccCHHHHhCCce--EEeCCCCHHHHHHHHHhhhhhhhhh
Confidence 65444432 223444444 689999999 69999999 8999999999964 55541110 0000000 0
Q ss_pred CCCCCCCC--------------CCCCCccCC----------CCccchhhHHHhhHHHHHHHHhhhcCCCccccccccCCc
Q 001355 393 GGFFSSPP--------------DFKNPVRSK----------SHYSTLCYLCTEKLEQEVAALLKLESSDSVTDQCLDNLT 448 (1093)
Q Consensus 393 ~g~~s~~~--------------~~~~p~~~~----------~~~~~~C~~C~~~~E~e~~~~~~~~~~~s~~~~~~~~lP 448 (1093)
.++.-++. +-..|-... ......++.+.+.+++++.++.....
T Consensus 352 ~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~------------- 418 (854)
T 1qvr_A 352 HGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIERE------------- 418 (854)
T ss_dssp TTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred cCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHH-------------
Confidence 01000000 000000000 00012344555555655554443210
Q ss_pred hhhhhcccCCC-CCCccccccchhHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccccchhhHHHHHhhccCCCCCC
Q 001355 449 SSDRIAALDTS-KGVGTAKAKDDVTALNAKIMELQRKWNDTCQSLHRTQLVPKLDIRQRSHVQLSEFVRLMANRKGSSSK 527 (1093)
Q Consensus 449 ~WLq~~~~~~~-~~~~~~~~kd~~~~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~s~ 527 (1093)
.|....+..+ .++. +.+++...+..++..|.++|...|..++.-+.+.. . .++........ ...
T Consensus 419 -~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~---~~~ 483 (854)
T 1qvr_A 419 -ALKKEKDPDSQERLK--AIEAEIAKLTEEIAKLRAEWEREREILRKLREAQH----R-----LDEVRREIELA---ERQ 483 (854)
T ss_dssp -HHSSCSSHHHHSCTH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-----HHHHHHHHHHH---TTT
T ss_pred -HHHhccccccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-----HHHHhhhHHHH---Hhc
Confidence 1111100000 1111 11335556777788899999999998864321100 0 00000000000 000
Q ss_pred CCCcccCCCCCCCCCcccccccccccccccCcccccccccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001355 528 YPSLCESQCTNPSPGAHMLSQNISSAEQNATIPLSSEANNVNFQSRLPINSSTKPQSNNDEHLLPPHPLADLYKPHEHTS 607 (1093)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 607 (1093)
..+. . .+.... ...|... ..+....... .
T Consensus 484 -~~~~------------~----~~~~~~-~~~~~~~--------~~~~~~~~~~-----------~-------------- 512 (854)
T 1qvr_A 484 -YDLN------------R----AAELRY-GELPKLE--------AEVEALSEKL-----------R-------------- 512 (854)
T ss_dssp -TCHH------------H----HHHHHT-THHHHHH--------HHHHHHHHHS-----------S--------------
T ss_pred -ccHH------------H----HHHHhh-hhhHHHH--------HHHHHHHhhh-----------c--------------
Confidence 0000 0 000000 0000000 0000000000 0
Q ss_pred cccccceeecccCCccCCCccccCCCccccccccccccCCcccccccccCCccccccccCCCCCCCCCCCCCHHHHHHHH
Q 001355 608 FSFLASVTTDLGLGKIYPSTRQEANTPKLIDNKEQCFSGSISAEFDAVSEGTFHNVVQSSSCSAPHTGEPFDPRDYKTLR 687 (1093)
Q Consensus 608 p~~~~~V~tdL~Lg~~~~s~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~~~ss~~~~~~~~~~~d~e~lk~L~ 687 (1093)
..|+. .+ .+....+...+++|+++|..++. +.+.+.+..+.
T Consensus 513 -------~~~~~------------~~-------------------~v~~~~l~~~v~~~~~ip~~~~~-~~~~~~l~~l~ 553 (854)
T 1qvr_A 513 -------GARFV------------RL-------------------EVTEEDIAEIVSRWTGIPVSKLL-EGEREKLLRLE 553 (854)
T ss_dssp -------SCSSC------------CS-------------------EECHHHHHHHHHTTSSCHHHHTT-CCHHHHHHSHH
T ss_pred -------ccccc------------cC-------------------CcCHHHHHHHHHHHhCCChHhhc-HHHHHHHHHHH
Confidence 00000 00 01123344555666776655443 33555677788
Q ss_pred HHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccc
Q 001355 688 IALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQR 767 (1093)
Q Consensus 688 ~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~ 767 (1093)
+.|.++|+||++++..|..+|.+.+.|+..+++|. .++||+||+|||||++|++||+.+++...+|+.+||+.+..
T Consensus 554 ~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~----~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 554 EELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPI----GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 629 (854)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCS----EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred HHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCc----eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence 88999999999999999999999999887665443 58999999999999999999999999899999999998643
Q ss_pred cCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCc
Q 001355 768 VSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGM 847 (1093)
Q Consensus 768 ~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~na 847 (1093)
. +.. ..++|.+++|+|+...+.++++++.+|++||||||||+ +++.+|+.|+++|++|++++..|+.++++|+
T Consensus 630 ~---~~~---s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~-l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~ 702 (854)
T 1qvr_A 630 K---HAV---SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEK-AHPDVFNILLQILDDGRLTDSHGRTVDFRNT 702 (854)
T ss_dssp S---GGG---GGC--------------CHHHHHHHCSSEEEEESSGGG-SCHHHHHHHHHHHTTTEECCSSSCCEECTTE
T ss_pred h---hHH---HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccc-cCHHHHHHHHHHhccCceECCCCCEeccCCe
Confidence 2 111 35677778888877777899999999999999999999 9999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCC
Q 001355 848 IFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGD 927 (1093)
Q Consensus 848 I~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~ 927 (1093)
+||+|||.+. +.+.+.. ++ ..
T Consensus 703 iiI~tsn~~~----------------~~~~~~~--------~~-----------------------------------~~ 723 (854)
T 1qvr_A 703 VIILTSNLGS----------------PLILEGL--------QK-----------------------------------GW 723 (854)
T ss_dssp EEEEECCTTH----------------HHHHHHH--------HT-----------------------------------TC
T ss_pred EEEEecCcCh----------------HHHhhhc--------cc-----------------------------------cc
Confidence 9999999741 0110000 00 00
Q ss_pred CCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHHHHHHHHH
Q 001355 928 SPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKILREIQPK 1007 (1093)
Q Consensus 928 ~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii~~~i~~~ 1007 (1093)
.+..+...+ .......|.|+|++|||.++.|.|++.+++..++...+...
T Consensus 724 ~~~~l~~~v------------------------------~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~ 773 (854)
T 1qvr_A 724 PYERIRDEV------------------------------FKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYL 773 (854)
T ss_dssp CHHHHHHHH------------------------------HHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHH------------------------------HHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHH
Confidence 000001111 12235579999999999999999999999999999999888
Q ss_pred HHHhcCCCceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 001355 1008 FQRAFGFEVLLEIDYEILVQILAATWLSD-RKKAIENWIENVVLRSFYEVRRKHHFTAGSVVKLV 1071 (1093)
Q Consensus 1008 ~~~~~~~~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~~~~~~~~~~VkLv 1071 (1093)
..++...++.+.|+++++++|+.+.|... +.|.+++.|+..+...+.+.........+..|++.
T Consensus 774 ~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~ 838 (854)
T 1qvr_A 774 RARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVD 838 (854)
T ss_dssp HHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHHTSSCSSCEEEEE
T ss_pred HHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEE
Confidence 88876667789999999999999999432 34445555555554444444444443345566554
No 2
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=3.9e-57 Score=565.06 Aligned_cols=709 Identities=18% Similarity=0.199 Sum_probs=497.0
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhcc-CCCCCCC
Q 001355 12 LSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFDR-LPSSKSV 90 (1093)
Q Consensus 12 lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~r-lp~~~~~ 90 (1093)
||++++.+|..|+.+|+++||+++||+|++.+||.. +....++.+++.+ ..+|+..+...|++ +|...++
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~--~~~~~iL~~~gvd-------~~~l~~~l~~~l~~~~p~~~~~ 72 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSN--PSAREALEACSVD-------LVALRQELEAFIEQTTPVLPAS 72 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTS--HHHHHHHHHTTCC-------HHHHHHHHHHHHHHHSCBCCCS
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcC--cHHHHHHHHcCCC-------HHHHHHHHHHHHhccCCCCCCc
Confidence 899999999999999999999999999999999985 4578888888843 57789999999998 9976431
Q ss_pred ---CCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCc-h-hhhhhcccCCCcHHHHH
Q 001355 91 ---EFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDP-M-ASRVFGEAGFLSRDIKL 165 (1093)
Q Consensus 91 ---~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp-~-vsrv~~eagf~s~~vk~ 165 (1093)
..|++|+.+..+|++|+.+.++..++ +|..+||+++||+++ + .+++|++.|++..++..
T Consensus 73 ~~~~~~~~s~~~~~vl~~A~~~a~~~~~~----------------~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~ 136 (758)
T 1r6b_X 73 EEERDTQPTLSFQRVLQRAVFHVQSSGRN----------------EVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVN 136 (758)
T ss_dssp SSCCCCEECHHHHHHHHHHHHHHHHHTCS----------------SBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCCcCHHHHHHHHHHHHHHHHcCCC----------------EeeHHHHHHHHhccccchHHHHHHHcCCCHHHHHH
Confidence 46999999999999998777665433 799999999999876 3 78999999999999998
Q ss_pred hhccCCCCCC---CCC--C--C--C----CCCCCccccCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhhcccccCCCC
Q 001355 166 AIIQPSVTQF---PPR--L--S--L----TRCPPIFLYNLTDSFPGRAGLKLPFGPDDVDENCRRIGEVLAGRDEKKGKN 232 (1093)
Q Consensus 166 ~i~~~~~~~~---~~~--~--~--~----~~~~~~~~~n~~~~~~~~~~~~~p~~~~~rdeeirrv~~vL~R~~~~~k~N 232 (1093)
.|.+...... ... . + . ...-..|..|+++. ++.+..+|+ +||++++++++++|.| ++++|
T Consensus 137 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~~~d~~--iGr~~~i~~l~~~l~~---~~~~~ 209 (758)
T 1r6b_X 137 FISHGTRKDEPTQSSDPGSQPNSEEQAGGEERLENFTTNLNQL--ARVGGIDPL--IGREKELERAIQVLCR---RRKNN 209 (758)
T ss_dssp HHHTC---------------------------CCSSSCBHHHH--HHTTCSCCC--CSCHHHHHHHHHHHTS---SSSCE
T ss_pred HHHHhhccccccccccccccccccccccchhHHHHHhHhHHHH--HhcCCCCCc--cCCHHHHHHHHHHHhc---cCCCC
Confidence 8876421110 000 0 0 0 00012444555442 345667787 6999999999999999 89999
Q ss_pred cEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEE
Q 001355 233 PLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVV 309 (1093)
Q Consensus 233 pvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil 309 (1093)
++|+|++|+| .+++++.++..+ .+|..+.+.+++.++ ++.+++|..++++|+.+++.+...+.. .++.||
T Consensus 210 vlL~G~~GtGKT~la~~la~~l~~~---~v~~~~~~~~~~~~~--~~~l~~~~~~~g~~e~~l~~~~~~~~~--~~~~iL 282 (758)
T 1r6b_X 210 PLLVGESGVGKTAIAEGLAWRIVQG---DVPEVMADCTIYSLD--IGSLLAGTKYRGDFEKRFKALLKQLEQ--DTNSIL 282 (758)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT---CSCGGGTTCEEEECC--CC---CCCCCSSCHHHHHHHHHHHHSS--SSCEEE
T ss_pred eEEEcCCCCCHHHHHHHHHHHHHhC---CCChhhcCCEEEEEc--HHHHhccccccchHHHHHHHHHHHHHh--cCCeEE
Confidence 9999999998 499999999875 899999999999999 999999999999999999999998875 357999
Q ss_pred EeCcchhhhcCCCcc-hHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCCCCcceeeeccCCCCCCC
Q 001355 310 NYGELKVLVSDSVST-EAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDLQLLPIHWKSSLMG 387 (1093)
Q Consensus 310 ~igdl~~~v~~~~~~-~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~Lq~v~i~~~~sl~~ 387 (1093)
||||++++++++... +.. ++.++|++ +.+|++++||+ ||+.+|.+++..+|+|.++|+ .+.|+. .+.
T Consensus 283 ~IDEi~~l~~~~~~~~~~~-----~~~~~L~~~l~~~~~~~I~a-t~~~~~~~~~~~d~aL~~Rf~--~i~v~~-p~~-- 351 (758)
T 1r6b_X 283 FIDEIHTIIGAGAASGGQV-----DAANLIKPLLSSGKIRVIGS-TTYQEFSNIFEKDRALARRFQ--KIDITE-PSI-- 351 (758)
T ss_dssp EETTTTTTTTSCCSSSCHH-----HHHHHHSSCSSSCCCEEEEE-ECHHHHHCCCCCTTSSGGGEE--EEECCC-CCH--
T ss_pred EEechHHHhhcCCCCcchH-----HHHHHHHHHHhCCCeEEEEE-eCchHHhhhhhcCHHHHhCce--EEEcCC-CCH--
Confidence 999999999987643 343 33456655 55789999999 699999999999999999985 455441 000
Q ss_pred cccCCCCCCCCCCCCCCCccCCCCccchhhHHHhhHHHHHHHHhhhcCCCccccccccCCchhhhhcccCCCCCCccccc
Q 001355 388 SFVPFGGFFSSPPDFKNPVRSKSHYSTLCYLCTEKLEQEVAALLKLESSDSVTDQCLDNLTSSDRIAALDTSKGVGTAKA 467 (1093)
Q Consensus 388 s~~~~~g~~s~~~~~~~p~~~~~~~~~~C~~C~~~~E~e~~~~~~~~~~~s~~~~~~~~lP~WLq~~~~~~~~~~~~~~~ 467 (1093)
.+...........|+... . .... +..+...-....+..
T Consensus 352 ----------------------~e~~~il~~l~~~~~~~~------~--v~~~-------~~al~~~~~~s~~~i----- 389 (758)
T 1r6b_X 352 ----------------------EETVQIINGLKPKYEAHH------D--VRYT-------AKAVRAAVELAVKYI----- 389 (758)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHH------T--CCCC-------HHHHHHHHHHHHHHC-----
T ss_pred ----------------------HHHHHHHHHHHHHHHHhc------C--CCCC-------HHHHHHHHHHhhhhc-----
Confidence 000000011111121100 0 0000 000000000000000
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccccchhhHHHHHhhccCCCCCCCCCcccCCCCCCCCCccccc
Q 001355 468 KDDVTALNAKIMELQRKWNDTCQSLHRTQLVPKLDIRQRSHVQLSEFVRLMANRKGSSSKYPSLCESQCTNPSPGAHMLS 547 (1093)
Q Consensus 468 kd~~~~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 547 (1093)
.+. .+..++.+|- +..|....
T Consensus 390 ~~~--~lp~~~i~ll---d~a~~~~~------------------------------------------------------ 410 (758)
T 1r6b_X 390 NDR--HLPDKAIDVI---DEAGARAR------------------------------------------------------ 410 (758)
T ss_dssp TTS--CTTHHHHHHH---HHHHHHHH------------------------------------------------------
T ss_pred ccc--cCchHHHHHH---HHHHHHHh------------------------------------------------------
Confidence 000 0000011110 00111000
Q ss_pred ccccccccccCcccccccccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccceeecccCCccCCCc
Q 001355 548 QNISSAEQNATIPLSSEANNVNFQSRLPINSSTKPQSNNDEHLLPPHPLADLYKPHEHTSFSFLASVTTDLGLGKIYPST 627 (1093)
Q Consensus 548 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~V~tdL~Lg~~~~s~ 627 (1093)
+.+. .. .+
T Consensus 411 --------------------------~~~~-~~-----------------------~~---------------------- 418 (758)
T 1r6b_X 411 --------------------------LMPV-SK-----------------------RK---------------------- 418 (758)
T ss_dssp --------------------------HSSS-CC-----------------------CC----------------------
T ss_pred --------------------------cccc-cc-----------------------cC----------------------
Confidence 0000 00 00
Q ss_pred cccCCCccccccccccccCCcccccccccCCccccccccCCCCCCCCCCCCCHHHHHHHHHHHhcccCccHHHHHHHHHH
Q 001355 628 RQEANTPKLIDNKEQCFSGSISAEFDAVSEGTFHNVVQSSSCSAPHTGEPFDPRDYKTLRIALAEKVGWQDEAICTISQA 707 (1093)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~~~ss~~~~~~~~~~~d~e~lk~L~~~L~e~ViGQdeai~~Ia~a 707 (1093)
..++...+...+..|+++|..++. .-+.+.+..+.+.|.+.|+||++++..|..+
T Consensus 419 ------------------------~~v~~~di~~~~~~~~~ip~~~~~-~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~ 473 (758)
T 1r6b_X 419 ------------------------KTVNVADIESVVARIARIPEKSVS-QSDRDTLKNLGDRLKMLVFGQDKAIEALTEA 473 (758)
T ss_dssp ------------------------CSCCHHHHHHHHHHHSCCCCCCSS-SSHHHHHHHHHHHHTTTSCSCHHHHHHHHHH
T ss_pred ------------------------CccCHHHHHHHHHHhcCCCccccc-hhHHHHHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 001111222233444555554442 3455678889999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCcccccccc
Q 001355 708 VSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKL 787 (1093)
Q Consensus 708 I~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~ 787 (1093)
+...+.|+..+++|. .++||+||+|||||++|++||+.+ ..+|+.+||+.+... +++ ..++|.++||
T Consensus 474 i~~~~~g~~~~~~p~----~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~---~~~---~~l~g~~~g~ 540 (758)
T 1r6b_X 474 IKMARAGLGHEHKPV----GSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMER---HTV---SRLIGAPPGY 540 (758)
T ss_dssp HHHHHTTCSCTTSCS----EEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSS---SCC---SSSCCCCSCS
T ss_pred HHHHhcccCCCCCCc----eEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcch---hhH---hhhcCCCCCC
Confidence 999999887665443 589999999999999999999998 478999999986432 222 4778888899
Q ss_pred ccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCCCCCCccCCCCC
Q 001355 788 RGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHSVHPQTT 867 (1093)
Q Consensus 788 ~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~ 867 (1093)
+|....+.+.++++..|++||||||||+ +++++++.|+++|++|++++..|+.++++|++||+|||.+ ...+...
T Consensus 541 ~g~~~~~~l~~~~~~~~~~vl~lDEi~~-~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~--~~~~~~~-- 615 (758)
T 1r6b_X 541 VGFDQGGLLTDAVIKHPHAVLLLDEIEK-AHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG--VRETERK-- 615 (758)
T ss_dssp HHHHHTTHHHHHHHHCSSEEEEEETGGG-SCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSS--CC-------
T ss_pred cCccccchHHHHHHhCCCcEEEEeCccc-cCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcc--hhhhhhc--
Confidence 8887778889999999999999999999 9999999999999999999999999999999999999974 2211100
Q ss_pred CCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCC
Q 001355 868 PVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLN 947 (1093)
Q Consensus 868 ~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLN 947 (1093)
.+|+....
T Consensus 616 -------------------~~g~~~~~----------------------------------------------------- 623 (758)
T 1r6b_X 616 -------------------SIGLIHQD----------------------------------------------------- 623 (758)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------ccCccccc-----------------------------------------------------
Confidence 01110000
Q ss_pred CcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHH
Q 001355 948 LPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQ 1027 (1093)
Q Consensus 948 l~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~ 1027 (1093)
.+.+...+....|.++|++|||.+|.|+|++.+++.+++...+.....++...++.+.++++++++
T Consensus 624 --------------~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 689 (758)
T 1r6b_X 624 --------------NSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNW 689 (758)
T ss_dssp ------------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHH
T ss_pred --------------hHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHH
Confidence 000011334457899999999999999999999999999999888777766667789999999999
Q ss_pred HHhcCCchh-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEe
Q 001355 1028 ILAATWLSD-RKKAIENWIENVVLRSFYEVRRKHHFTAGSVVKLVA 1072 (1093)
Q Consensus 1028 Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~~~~~~~~~~VkLv~ 1072 (1093)
|+...|... +.|.++++|+..+.+.+.+.........+..|++..
T Consensus 690 l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l~~~~~~~~~~~~~~ 735 (758)
T 1r6b_X 690 LAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVAL 735 (758)
T ss_dssp HHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHHHSTTTTCEEEEEEE
T ss_pred HHHhCCCcCCCchHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEE
Confidence 999999654 455666666666666555544444444455665553
No 3
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=9.1e-57 Score=561.89 Aligned_cols=712 Identities=18% Similarity=0.209 Sum_probs=465.7
Q ss_pred hhcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhccCCCCCC
Q 001355 10 QCLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFDRLPSSKS 89 (1093)
Q Consensus 10 q~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~rlp~~~~ 89 (1093)
..||++|+.+|..|+.+|+++||+++||+|++.+||..+.|++..++.+++.+ ..+|+..+...|++.|...
T Consensus 4 ~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd-------~~~l~~~l~~~l~~~~~~~- 75 (758)
T 3pxi_A 4 GRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLG-------SEKIQKEVESLIGRGQEMS- 75 (758)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCC-------HHHHHHHHHTTSCCCCTTC-
T ss_pred hhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCC-------HHHHHHHHHHHhccCCCCC-
Confidence 47999999999999999999999999999999999999999999999999843 6779999999999998753
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCch--hhhhhcccCCCcHHHHHhh
Q 001355 90 VEFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDPM--ASRVFGEAGFLSRDIKLAI 167 (1093)
Q Consensus 90 ~~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp~--vsrv~~eagf~s~~vk~~i 167 (1093)
..|++|+.+..+|.+|+.+.++..++ +|..|||+++||+++. .+++|++.|++...++..|
T Consensus 76 -~~~~~s~~~~~vl~~A~~~A~~~~~~----------------~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i 138 (758)
T 3pxi_A 76 -QTIHYTPRAKKVIELSMDEARKLGHS----------------YVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQV 138 (758)
T ss_dssp -SSCEECHHHHHHHHHHHHHHHTTTCS----------------SBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHH
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHcCCC----------------cccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHH
Confidence 46999999999999998877765433 7999999999998763 6799999999999999999
Q ss_pred ccCCCCCCCCCC-CCCCCC------CccccCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhhcccccCCCCcEEeccch
Q 001355 168 IQPSVTQFPPRL-SLTRCP------PIFLYNLTDSFPGRAGLKLPFGPDDVDENCRRIGEVLAGRDEKKGKNPLLVGVCA 240 (1093)
Q Consensus 168 ~~~~~~~~~~~~-~~~~~~------~~~~~n~~~~~~~~~~~~~p~~~~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~ 240 (1093)
++.......... ....+. ..|..|+++. ++.+..+|+ +|+++++++++++|.| ++++|++|+|++|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~~ld~i--iG~~~~i~~l~~~l~~---~~~~~vLL~G~pG 211 (758)
T 3pxi_A 139 LQLLGSNETGSSAAGTNSNANTPTLDSLARDLTAI--AKEDSLDPV--IGRSKEIQRVIEVLSR---RTKNNPVLIGEPG 211 (758)
T ss_dssp HTTCCCCCTTC-----CCSTHHHHHHSSCCBHHHH--TTSSCSCCC--CCCHHHHHHHHHHHHC---SSSCEEEEESCTT
T ss_pred HHHhcCCcccccccccccchhhhHHHHHHHHHHHH--HhhCCCCCc--cCchHHHHHHHHHHhC---CCCCCeEEECCCC
Confidence 876543211000 000000 1566666653 456677888 6999999999999999 9999999999999
Q ss_pred hh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhh
Q 001355 241 NS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVL 317 (1093)
Q Consensus 241 ~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~ 317 (1093)
+| .+++++..+.++ ++|..+.+.+++.++ + |..++|+||.+++.+...++. .++.|||||
T Consensus 212 tGKT~la~~la~~l~~~---~~p~~l~~~~~~~~~--~-----g~~~~G~~e~~l~~~~~~~~~--~~~~iLfiD----- 274 (758)
T 3pxi_A 212 VGKTAIAEGLAQQIINN---EVPEILRDKRVMTLD--M-----GTKYRGEFEDRLKKVMDEIRQ--AGNIILFID----- 274 (758)
T ss_dssp TTTHHHHHHHHHHHHSS---CSCTTTSSCCEECC-----------------CTTHHHHHHHHHT--CCCCEEEEC-----
T ss_pred CCHHHHHHHHHHHHhcC---CCChhhcCCeEEEec--c-----cccccchHHHHHHHHHHHHHh--cCCEEEEEc-----
Confidence 98 599999999885 899999999999999 4 677899999999999998885 568899999
Q ss_pred hcCCCcchHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCCCCcceeeeccCCC--C-------CCC
Q 001355 318 VSDSVSTEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDLQLLPIHWKS--S-------LMG 387 (1093)
Q Consensus 318 v~~~~~~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~Lq~v~i~~~~--s-------l~~ 387 (1093)
+.+ +..++|.+ +.+|.+++||+ ||..+|.++++.+|+|.++| +.+.|+.-+ . +..
T Consensus 275 -------~~~-----~~~~~L~~~l~~~~v~~I~a-t~~~~~~~~~~~d~al~rRf--~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 275 -------AAI-----DASNILKPSLARGELQCIGA-TTLDEYRKYIEKDAALERRF--QPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp -------C-------------CCCTTSSSCEEEEE-CCTTTTHHHHTTCSHHHHSE--EEEECCCCCHHHHHHHHHHTTT
T ss_pred -------Cch-----hHHHHHHHHHhcCCEEEEeC-CChHHHHHHhhccHHHHhhC--cEEEeCCCCHHHHHHHHHHHHH
Confidence 122 22344444 56889999999 69999999999999999999 556665111 0 000
Q ss_pred cccCCCCCCCCCCCCCCCc---cCCCCccchhhHHHhhHHHHHHHHhhhcCCCccccccccCCchhhhhcccCCCCCCcc
Q 001355 388 SFVPFGGFFSSPPDFKNPV---RSKSHYSTLCYLCTEKLEQEVAALLKLESSDSVTDQCLDNLTSSDRIAALDTSKGVGT 464 (1093)
Q Consensus 388 s~~~~~g~~s~~~~~~~p~---~~~~~~~~~C~~C~~~~E~e~~~~~~~~~~~s~~~~~~~~lP~WLq~~~~~~~~~~~~ 464 (1093)
.+....+..-+ .+....+ ..........+.-...+=.++....... ....|..+...+.. ++.
T Consensus 340 ~~~~~~~~~i~-~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~---------~~~~p~~~~~l~~~----~~~ 405 (758)
T 3pxi_A 340 RYEAHHRVSIT-DDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLR---------SFTTPPNLKELEQK----LDE 405 (758)
T ss_dssp TSGGGSSCSCC-HHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHH---------TTC--CCTHHHHHH----HHH
T ss_pred HHHHhcCCCCC-HHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhh---------ccCCCcchhhHHHH----HHH
Confidence 01001111000 0000000 0000000000000000101111100000 00011111111000 000
Q ss_pred cc-ccch--hHHHHHHHHHHHHHHHHHhhhcccCCCCCcccccccccchhhHHHHHhhccCCCCCCCCCcccCCCCCCCC
Q 001355 465 AK-AKDD--VTALNAKIMELQRKWNDTCQSLHRTQLVPKLDIRQRSHVQLSEFVRLMANRKGSSSKYPSLCESQCTNPSP 541 (1093)
Q Consensus 465 ~~-~kd~--~~~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~s~~~~~~~~~~~~~~~ 541 (1093)
.+ .++. ...-..+..+|++++..+...+..... . |. .+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~--~---~~------~~---------------------------- 446 (758)
T 3pxi_A 406 VRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKK--S---WK------EK---------------------------- 446 (758)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHS--G---GG------HH----------------------------
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH--H---HH------Hh----------------------------
Confidence 00 0000 000001223455555555444321110 0 00 00
Q ss_pred CcccccccccccccccCcccccccccccccCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccceeecccCC
Q 001355 542 GAHMLSQNISSAEQNATIPLSSEANNVNFQSRLPINSSTKPQSNNDEHLLPPHPLADLYKPHEHTSFSFLASVTTDLGLG 621 (1093)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~V~tdL~Lg 621 (1093)
. ... . + +
T Consensus 447 ------------~-------------------~~~-----------~----~-------------------~-------- 453 (758)
T 3pxi_A 447 ------------Q-------------------GQE-----------N----S-------------------E-------- 453 (758)
T ss_dssp ------------H-------------------HCC---------------------------------------------
T ss_pred ------------h-------------------ccc-----------C----c-------------------c--------
Confidence 0 000 0 0 0
Q ss_pred ccCCCccccCCCccccccccccccCCcccccccccCCccccccccCCCCCCCCCCCCCHHHHHHHHHHHhcccCccHHHH
Q 001355 622 KIYPSTRQEANTPKLIDNKEQCFSGSISAEFDAVSEGTFHNVVQSSSCSAPHTGEPFDPRDYKTLRIALAEKVGWQDEAI 701 (1093)
Q Consensus 622 ~~~~s~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~s~~~~~ss~~~~~~~~~~~d~e~lk~L~~~L~e~ViGQdeai 701 (1093)
++...+...+++|+++|...+. ..+.+.+..+.+.|.+.|+||++++
T Consensus 454 --------------------------------v~~~~i~~~v~~~~~ip~~~~~-~~~~~~l~~l~~~l~~~viGq~~a~ 500 (758)
T 3pxi_A 454 --------------------------------VTVDDIAMVVSSWTGVPVSKIA-QTETDKLLNMENILHSRVIGQDEAV 500 (758)
T ss_dssp --------------------------------CCTHHHHHHHHTTC-------C-HHHHSCC-CHHHHHHTTSCSCHHHH
T ss_pred --------------------------------cCHHHHHHHHHHHhCCChHHhh-HHHHHHHHHHHHHHhCcCcChHHHH
Confidence 1111222333444444443332 1223345667888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCcc
Q 001355 702 CTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNID 781 (1093)
Q Consensus 702 ~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~ 781 (1093)
..|..++.+.+.+...+.+|. .++||+||+|||||++|++||+.++++..+|+++||+.+.+...
T Consensus 501 ~~l~~~i~~~~~~~~~~~~p~----~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~----------- 565 (758)
T 3pxi_A 501 VAVAKAVRRARAGLKDPKRPI----GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS----------- 565 (758)
T ss_dssp HHHHHHHHHHTTTCSCTTSCS----EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC-----------
T ss_pred HHHHHHHHHHHcccCCCCCCc----eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc-----------
Confidence 999999999998887665443 47999999999999999999999999999999999998643111
Q ss_pred ccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCCCCCCc
Q 001355 782 FCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHS 861 (1093)
Q Consensus 782 G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~~~~~~ 861 (1093)
.. .+.++++++..|++||||||||+ +++.+|+.|+++|++|++++..|+.+++.|++||+|||.+....
T Consensus 566 ~~---------~~~l~~~~~~~~~~vl~lDEi~~-~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~- 634 (758)
T 3pxi_A 566 TS---------GGQLTEKVRRKPYSVVLLDAIEK-AHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEK- 634 (758)
T ss_dssp CC------------CHHHHHHCSSSEEEEECGGG-SCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCC-
T ss_pred cc---------cchhhHHHHhCCCeEEEEeCccc-cCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhH-
Confidence 10 23567888899999999999999 99999999999999999999999999999999999999741000
Q ss_pred cCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhc
Q 001355 862 VHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFR 941 (1093)
Q Consensus 862 ~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~ 941 (1093)
+ .+
T Consensus 635 ------------~------------------------------------------------------------~~----- 637 (758)
T 3pxi_A 635 ------------D------------------------------------------------------------KV----- 637 (758)
T ss_dssp ------------H------------------------------------------------------------HH-----
T ss_pred ------------H------------------------------------------------------------HH-----
Confidence 0 00
Q ss_pred cccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecC
Q 001355 942 SYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEID 1021 (1093)
Q Consensus 942 ~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id 1021 (1093)
.......|.|+|++|+|.+|.|+|++.+++.+++...+....+++...++.+.++
T Consensus 638 -------------------------~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 692 (758)
T 3pxi_A 638 -------------------------MGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELT 692 (758)
T ss_dssp -------------------------HHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEEC
T ss_pred -------------------------HHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEC
Confidence 0112336889999999999999999999999999999988888887678889999
Q ss_pred HHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEe
Q 001355 1022 YEILVQILAATWLSD-RKKAIENWIENVVLRSFYEVRRKHHFTAGSVVKLVA 1072 (1093)
Q Consensus 1022 ~~vle~Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~~~~~~~~~~VkLv~ 1072 (1093)
++++++|+..+|... +.|.++++|++.+...+.+.........+..|++..
T Consensus 693 ~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~~~~~~~~~~~~~ 744 (758)
T 3pxi_A 693 DAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDV 744 (758)
T ss_dssp HHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTTCSCSSSEEEEEE
T ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEEE
Confidence 999999988655433 455566666666666665555555554466676653
No 4
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.97 E-value=2.2e-30 Score=306.91 Aligned_cols=307 Identities=16% Similarity=0.187 Sum_probs=242.7
Q ss_pred hhcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhccCCCCCC
Q 001355 10 QCLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFDRLPSSKS 89 (1093)
Q Consensus 10 q~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~rlp~~~~ 89 (1093)
..||++++.||..|+.+|+++||+++||.|++.+||..+.|+++.++.+++.+ ..+|+..+...|.+.|...
T Consensus 4 ~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd-------~~~l~~~l~~~l~~~~~~~- 75 (468)
T 3pxg_A 4 GRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLG-------SEKIQKEVESLIGRGQEMS- 75 (468)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCC-------HHHHHHHHHTTSCCCCTTC-
T ss_pred hhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCC-------HHHHHHHHHHHhcccCCCC-
Confidence 47999999999999999999999999999999999999999999999999853 5778888888999888653
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCch--hhhhhcccCCCcHHHHHhh
Q 001355 90 VEFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDPM--ASRVFGEAGFLSRDIKLAI 167 (1093)
Q Consensus 90 ~~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp~--vsrv~~eagf~s~~vk~~i 167 (1093)
..|++|+.+..+|++|+.+.++..++ +|+.+||+|+||+++. .+++|++.|++..+++..+
T Consensus 76 -~~~~~S~~~~~vL~~A~~~A~~~g~~----------------~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i 138 (468)
T 3pxg_A 76 -QTIHYTPRAKKVIELSMDEARKLGHS----------------YVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQV 138 (468)
T ss_dssp -SSCEECHHHHHHHHHHHHHHHTTTCS----------------SBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHH
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHcCCC----------------eecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHH
Confidence 45999999999999998887765433 7999999999998763 6899999999999999999
Q ss_pred ccCCCCCCCCCC-CCCCC----C--CccccCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHhhcccccCCCCcEEeccch
Q 001355 168 IQPSVTQFPPRL-SLTRC----P--PIFLYNLTDSFPGRAGLKLPFGPDDVDENCRRIGEVLAGRDEKKGKNPLLVGVCA 240 (1093)
Q Consensus 168 ~~~~~~~~~~~~-~~~~~----~--~~~~~n~~~~~~~~~~~~~p~~~~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~ 240 (1093)
.+.......... .+... + ..|..|+++. ++.+..+|+ +||++++++++++|.| ++++|++|+|++|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~r~~~ld~i--iGr~~~i~~l~~~l~r---~~~~~~LL~G~pG 211 (468)
T 3pxg_A 139 LQLLGSNETGSSAAGTNSNANTPTLDSLARDLTAI--AKEDSLDPV--IGRSKEIQRVIEVLSR---RTKNNPVLIGEPG 211 (468)
T ss_dssp HTTCCCCCTTC-----CCSTHHHHHHSSCCBHHHH--TTSSCSCCC--CCCHHHHHHHHHHHHC---SSSCEEEEESCTT
T ss_pred HHHhccCcccccccCcCCccCchHHHHHHHHHHHH--HhcCCCCCc--cCcHHHHHHHHHHHhc---cCCCCeEEECCCC
Confidence 876533211000 00001 1 1566666653 466778888 6999999999999999 9999999999999
Q ss_pred hh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhh
Q 001355 241 NS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVL 317 (1093)
Q Consensus 241 ~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~ 317 (1093)
+| .+++++.++.++ .+|..|++.+|+.++ ++ ..++|+|+.+++.+...++. .+++|||||
T Consensus 212 ~GKT~la~~la~~l~~~---~~p~~l~~~~~~~l~--~~-----~~~~g~~e~~~~~~~~~~~~--~~~~iLfiD----- 274 (468)
T 3pxg_A 212 VGKTAIAEGLAQQIINN---EVPEILRDKRVMTLD--MG-----TKYRGEFEDRLKKVMDEIRQ--AGNIILFID----- 274 (468)
T ss_dssp TTTHHHHHHHHHHHHSS---CSCTTTSSCCEECC-----------------CTTHHHHHHHHHT--CCCCEEEEC-----
T ss_pred CCHHHHHHHHHHHHHhC---CCChhhcCCeEEEee--CC-----ccccchHHHHHHHHHHHHHh--cCCeEEEEe-----
Confidence 98 599999999985 899999999999999 54 66899999999999998885 467899999
Q ss_pred hcCCCcchHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCCCCcceeeecc
Q 001355 318 VSDSVSTEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDLQLLPIH 380 (1093)
Q Consensus 318 v~~~~~~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~Lq~v~i~ 380 (1093)
+.. +..++|.+ +.+|.+++||+ ||..+|.++++.+|+|.+++. .+.|+
T Consensus 275 -------~~~-----~a~~~L~~~L~~g~v~vI~a-t~~~e~~~~~~~~~al~~Rf~--~i~v~ 323 (468)
T 3pxg_A 275 -------AAI-----DASNILKPSLARGELQCIGA-TTLDEYRKYIEKDAALERRFQ--PIQVD 323 (468)
T ss_dssp -------C-------------CCCTTSSSCEEEEE-CCTTTTHHHHTTCSHHHHSEE--EEECC
T ss_pred -------Cch-----hHHHHHHHhhcCCCEEEEec-CCHHHHHHHhhcCHHHHHhCc--cceeC
Confidence 122 23455554 66889999999 699999999999999999984 56655
No 5
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.94 E-value=2e-25 Score=248.33 Aligned_cols=296 Identities=21% Similarity=0.257 Sum_probs=227.2
Q ss_pred CHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceE
Q 001355 679 DPRDYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLI 758 (1093)
Q Consensus 679 d~e~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv 758 (1093)
+.+.+..+.+.|.+.++||+.++..|..++...+.++.++.+| ..+++|+||+|||||++|++||+.+.+...+|+
T Consensus 4 ~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~----~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 4 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRP----IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp HHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSC----SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCC----ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 3467889999999999999999999999999998887766433 358999999999999999999999988888999
Q ss_pred EeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCC
Q 001355 759 HVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY 838 (1093)
Q Consensus 759 ~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~ 838 (1093)
.++|+.+.... . ...++|...++.|....+.+.+++...+++||||||||+ +++.+|+.|+++|+++.+.+..
T Consensus 80 ~~~~~~~~~~~---~---~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~-l~~~~~~~Ll~~le~~~~~~~~ 152 (311)
T 4fcw_A 80 RIDMTEYMEKH---A---VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEK-AHPDVFNILLQMLDDGRLTDSH 152 (311)
T ss_dssp EEEGGGCCSTT---H---HHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGG-SCHHHHHHHHHHHHHSEEECTT
T ss_pred Eeecccccccc---c---HHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhh-cCHHHHHHHHHHHhcCEEEcCC
Confidence 99998753211 0 124566666666665557788999999999999999999 9999999999999999999988
Q ss_pred CeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhh
Q 001355 839 GRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRR 918 (1093)
Q Consensus 839 G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 918 (1093)
|+.+++++++||+|||.+ .. .+.... +
T Consensus 153 ~~~~~~~~~iiI~ttn~~--~~--------------~i~~~~--------~----------------------------- 179 (311)
T 4fcw_A 153 GRTVDFRNTVIIMTSNLG--SP--------------LILEGL--------Q----------------------------- 179 (311)
T ss_dssp SCEEECTTEEEEEEESTT--HH--------------HHHTTT--------T-----------------------------
T ss_pred CCEEECCCcEEEEecccC--HH--------------HHHhhh--------c-----------------------------
Confidence 999999999999999973 11 111000 0
Q ss_pred cccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHH
Q 001355 919 KRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAE 998 (1093)
Q Consensus 919 kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ 998 (1093)
....+..+.+.+. ......|.++|++|++.++.|.|++.+++.+
T Consensus 180 ------~~~~~~~l~~~~~------------------------------~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~ 223 (311)
T 4fcw_A 180 ------KGWPYERIRDEVF------------------------------KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQ 223 (311)
T ss_dssp ------SCCCSSTHHHHTH------------------------------HHHHHHSCHHHHTTCSEEEECCCCCHHHHHH
T ss_pred ------ccccHHHHHHHHH------------------------------HHHHHhCCHHHHhcCCeEEEeCCCCHHHHHH
Confidence 0000011111110 1124478999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEeec
Q 001355 999 KILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSD-RKKAIENWIENVVLRSFYEVRRKHHFTAGSVVKLVAHE 1074 (1093)
Q Consensus 999 ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~vl~~~l~e~~~~~~~~~~~~VkLv~~~ 1074 (1093)
++...+.....++...+..+.++++++++|+...|... ..|.++++++..+...+.+.........+..|++..-+
T Consensus 224 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~i~i~~~~ 300 (311)
T 4fcw_A 224 IVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGP 300 (311)
T ss_dssp HHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHHTSSCTTCEEEEEECS
T ss_pred HHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEEC
Confidence 99998888777765556779999999999999999432 45667777777777666666666555556677666433
No 6
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.85 E-value=1.8e-21 Score=222.66 Aligned_cols=291 Identities=17% Similarity=0.157 Sum_probs=170.9
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCC--CCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEE
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRD--VGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIH 759 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~--~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~ 759 (1093)
..+.|.+.|.+.|+||++++..|..++.......... ..........+||+||+|||||++|++||+.+ ..+|+.
T Consensus 5 ~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~ 81 (363)
T 3hws_A 5 TPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL---DVPFTM 81 (363)
T ss_dssp CHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEE
T ss_pred CHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEE
Confidence 4567888999999999999999999986443221110 00111233579999999999999999999988 578999
Q ss_pred eecCCccccCCCCccccCCCccccccccccchhhhHHHHHHH-------hCCceEEEEcccccccCHH------------
Q 001355 760 VDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR-------SKPYSVVFLEDLDKAADPI------------ 820 (1093)
Q Consensus 760 id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~-------~~p~~VI~LDEVDkiad~~------------ 820 (1093)
++|+.... ..|+|. ...+.+.+.+. ..+.+||||||||+ +++.
T Consensus 82 ~~~~~l~~----------~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~-l~~~~~~~~~~~~~~~ 143 (363)
T 3hws_A 82 ADATTLTE----------AGYVGE-------DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDK-ISRKSDNPSITRDVSG 143 (363)
T ss_dssp EEHHHHTT----------CHHHHH-------HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHH-HCCCSSCC---CHHHH
T ss_pred echHHhcc----------cccccc-------cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhh-hcccccccccccccch
Confidence 99885321 223333 22233333332 23567999999999 8765
Q ss_pred --HHHHHhhhhcCCeE---ecCCCeEeecCCcEEEEecCCCCCCCccCCCCCCCcc-hHHHHHhhhhhhhhhcccccccc
Q 001355 821 --VQSSLTKAISTGKF---TDSYGRDVSISGMIFVATSTILKGKHSVHPQTTPVKF-SEEIILGAKRWQMQTAISHGFAD 894 (1093)
Q Consensus 821 --vq~~Ll~aLe~Gr~---~d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f-~eekil~~~~~~l~~~i~~~~~~ 894 (1093)
+|+.|+++|+ |.+ .+.+|+.++..+.++|+|||.. .+.. ..| .-+++.+.. ..-...++|....
T Consensus 144 ~~~~~~Ll~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~----~i~~----g~~~~l~~~i~~~-~~~~~~~gf~~~~ 213 (363)
T 3hws_A 144 EGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKIL----FICG----GAFAGLDKVISHR-VETGSGIGFGATV 213 (363)
T ss_dssp HHHHHHHHHHHH-CC----------------CCCCCTTSSE----EEEE----ECCTTHHHHHHHH-HCCCC--------
T ss_pred HHHHHHHHHHhc-CceeeccCccccccCCCceEEEECCCce----EEec----CCcHHHHHHHHHh-hhccccCCccccc
Confidence 9999999999 664 3445666655555555555540 0000 001 111121110 0000122221110
Q ss_pred cccCCCCcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccC
Q 001355 895 AARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAW 974 (1093)
Q Consensus 895 ~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~ 974 (1093)
. . .. .....+.+.+.. .. .......|
T Consensus 214 ~------------------------~-----~~-~~~~~~~l~~~v----------------------~~--~~l~~~~~ 239 (363)
T 3hws_A 214 K------------------------A-----KS-DKASEGELLAQV----------------------EP--EDLIKFGL 239 (363)
T ss_dssp ----------------------------------CCSCHHHHHHTC----------------------CH--HHHHHHTC
T ss_pred c------------------------c-----cc-cchhhHHHHHhC----------------------CH--HHHHHcCC
Confidence 0 0 00 000000000000 00 01123358
Q ss_pred hHHHhhccccccccCCCChHHHHHHHHH----HHHHHHHHhcCCCceeecCHHHHHHHHhcCCchh-hHHHHHHHHHHHH
Q 001355 975 LEDFFDQTDAIAVFQPLNFDLLAEKILR----EIQPKFQRAFGFEVLLEIDYEILVQILAATWLSD-RKKAIENWIENVV 1049 (1093)
Q Consensus 975 ~~efl~rId~~VvF~pld~~~l~~ii~~----~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~-~~r~ie~wve~vl 1049 (1093)
.++|++|||.+++|.|++.+++.+|+.. .+......+...++.+.|+++++++|+..+|..+ +.|.|+++|++.+
T Consensus 240 ~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~ 319 (363)
T 3hws_A 240 IPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAAL 319 (363)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHH
Confidence 9999999999999999999999999987 4444444444457889999999999998777544 5788899999998
Q ss_pred HHHHHHHH
Q 001355 1050 LRSFYEVR 1057 (1093)
Q Consensus 1050 ~~~l~e~~ 1057 (1093)
.+.+.++-
T Consensus 320 ~~~l~~~~ 327 (363)
T 3hws_A 320 LDTMYDLP 327 (363)
T ss_dssp HHHHHSTT
T ss_pred HHHHHhcc
Confidence 88887663
No 7
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.82 E-value=1.9e-19 Score=206.84 Aligned_cols=281 Identities=17% Similarity=0.197 Sum_probs=166.8
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHH----HHHhcC-------CCCCCC------CCCCCeEEEeeCCCCChHHHHHH
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVS----RWRIGN-------GRDVGS------NSKRGIWLAFLGPDKVGKKKIAS 744 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~----~~rsg~-------~~~~~~------~~k~~~~LLf~Gp~GvGKT~lAr 744 (1093)
+.+.+.+.|.+.|+||++++..|..++. +.+.|. ..+++| ..+...+++|+||+|||||++|+
T Consensus 11 ~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 11 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHH
T ss_pred CHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHH
Confidence 5678999999999999999999999883 333322 000000 01123479999999999999999
Q ss_pred HHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHH-------HhCCceEEEEccccccc
Q 001355 745 ALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEF-------RSKPYSVVFLEDLDKAA 817 (1093)
Q Consensus 745 aLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal-------~~~p~~VI~LDEVDkia 817 (1093)
+||+.+ ..+|+.++|..... .+++|. ...+.+.+.+ ...+++|||||||++ +
T Consensus 91 ~la~~l---~~~~~~~~~~~~~~----------~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~-l 149 (376)
T 1um8_A 91 TLAKHL---DIPIAISDATSLTE----------AGYVGE-------DVENILTRLLQASDWNVQKAQKGIVFIDEIDK-I 149 (376)
T ss_dssp HHHHHT---TCCEEEEEGGGCC-------------------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGG-C
T ss_pred HHHHHh---CCCEEEecchhhhh----------cCcCCc-------cHHHHHHHHHhhccchhhhcCCeEEEEcCHHH-H
Confidence 999988 56899999876321 123332 2112233322 234578999999999 8
Q ss_pred CHH--------------HHHHHhhhhcCCeE--ecCCCeE--------eecCCcEEEEecCCCCCCCccCCCCCCCcchH
Q 001355 818 DPI--------------VQSSLTKAISTGKF--TDSYGRD--------VSISGMIFVATSTILKGKHSVHPQTTPVKFSE 873 (1093)
Q Consensus 818 d~~--------------vq~~Ll~aLe~Gr~--~d~~G~~--------V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~e 873 (1093)
... +|+.|+++|+.+.+ .+.+|+. +..+|.+||+|+|.. . . +
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~----~---------l-~ 215 (376)
T 1um8_A 150 SRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFD----G---------L-A 215 (376)
T ss_dssp --------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCT----T---------H-H
T ss_pred hhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHH----H---------H-H
Confidence 877 99999999998754 4444544 344555555555520 0 0 0
Q ss_pred HHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCccccc
Q 001355 874 EIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEA 953 (1093)
Q Consensus 874 ekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~ 953 (1093)
+.+ . ++.. ...+++.... + +.... ..+.
T Consensus 216 ~~l-~-~R~~-~~~~g~~~~~------------------------~-----~~~~~----~~~~---------------- 243 (376)
T 1um8_A 216 EII-K-KRTT-QNVLGFTQEK------------------------M-----SKKEQ----EAIL---------------- 243 (376)
T ss_dssp HHT-T-TSCS-SCCCSCCCSS------------------------C-----CTTTT----TTSG----------------
T ss_pred HHH-H-HHhc-ccccCCCchh------------------------h-----hccch----hHHH----------------
Confidence 000 0 0000 0011110000 0 00000 0000
Q ss_pred ccccCCccCCchhhhh-ccccChHHHhhccccccccCCCChHHHHHHHHH----HHHHHHHHhcCCCceeecCHHHHHHH
Q 001355 954 EEDTSSEKFDSDTICE-NSGAWLEDFFDQTDAIAVFQPLNFDLLAEKILR----EIQPKFQRAFGFEVLLEIDYEILVQI 1028 (1093)
Q Consensus 954 e~~~~~~~~~~d~~~e-~~~~~~~efl~rId~~VvF~pld~~~l~~ii~~----~i~~~~~~~~~~~~~L~Id~~vle~L 1028 (1093)
......+ ....|.++|++||+.+|.|+|++.+++.+++.. .+....+.+...+..+.++++++++|
T Consensus 244 ---------~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 314 (376)
T 1um8_A 244 ---------HLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEI 314 (376)
T ss_dssp ---------GGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHH
T ss_pred ---------hhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHH
Confidence 0000011 134688999999999999999999999999973 33333333334567799999999999
Q ss_pred HhcCCchh-hHHHHHHHHHHHHHHHHHHHHh
Q 001355 1029 LAATWLSD-RKKAIENWIENVVLRSFYEVRR 1058 (1093)
Q Consensus 1029 l~~~~~~~-~~r~ie~wve~vl~~~l~e~~~ 1058 (1093)
+..+|... +.|.++++++..+...+.++..
T Consensus 315 ~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~ 345 (376)
T 1um8_A 315 AQLALERKTGARGLRAIIEDFCLDIMFDLPK 345 (376)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHHHHHTGGG
T ss_pred HHHhcccccCcHHHHHHHHHHHHHHHhhccC
Confidence 99988432 5677888888888888766544
No 8
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.75 E-value=1.7e-17 Score=183.60 Aligned_cols=243 Identities=12% Similarity=0.146 Sum_probs=166.6
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHh--cCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEE
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRI--GNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIH 759 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rs--g~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~ 759 (1093)
+.+.+.+.|.+.|+||++++..|..++..... +...... .+..+.+++|+||+|||||++|++||+.+ ..+++.
T Consensus 5 ~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~ 80 (310)
T 1ofh_A 5 TPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIK 80 (310)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHH-HHCCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred CHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhccccc-ccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 45678899999999999999999998876321 1110000 00112469999999999999999999988 567899
Q ss_pred eecCCccccCCCCccccCCCccccccccccchhhhHHHH----HHHh-CCceEEEEcccccccCHHH------------H
Q 001355 760 VDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQ----EFRS-KPYSVVFLEDLDKAADPIV------------Q 822 (1093)
Q Consensus 760 id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~e----al~~-~p~~VI~LDEVDkiad~~v------------q 822 (1093)
++|+.+.. .+++|...+ .....+.. .+.. .+.+||||||||+ +.... |
T Consensus 81 i~~~~~~~----------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~-l~~~~~~~~~~~~~~~~~ 145 (310)
T 1ofh_A 81 VEATKFTE----------VGYVGKEVD----SIIRDLTDSAGGAIDAVEQNGIVFIDEIDK-ICKKGEYSGADVSREGVQ 145 (310)
T ss_dssp EEGGGGSS----------CCSGGGSTT----HHHHHHHHTTTTCHHHHHHHCEEEEECGGG-GSCCSSCCSSHHHHHHHH
T ss_pred Ecchhccc----------CCccCccHH----HHHHHHHHHhhHHHhhccCCCEEEEEChhh-cCccccccccchhHHHHH
Confidence 99886431 122232211 11111111 1111 2357999999999 87543 9
Q ss_pred HHHhhhhcCCeEecCCCeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCc
Q 001355 823 SSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMN 902 (1093)
Q Consensus 823 ~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~ 902 (1093)
+.|+++|+++.+....| .+...+.+||+++|... .
T Consensus 146 ~~Ll~~le~~~~~~~~~-~~~~~~~~~i~~~~~~~--~------------------------------------------ 180 (310)
T 1ofh_A 146 RDLLPLVEGSTVSTKHG-MVKTDHILFIASGAFQV--A------------------------------------------ 180 (310)
T ss_dssp HHHHHHHHCCEEEETTE-EEECTTCEEEEEECCSS--S------------------------------------------
T ss_pred HHHHHHhcCCeEecccc-cccCCcEEEEEcCCccc--C------------------------------------------
Confidence 99999999988776554 56677888998877410 0
Q ss_pred ccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhcc
Q 001355 903 VKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQT 982 (1093)
Q Consensus 903 ~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rI 982 (1093)
....+.++|++|+
T Consensus 181 -------------------------------------------------------------------~~~~l~~~l~~R~ 193 (310)
T 1ofh_A 181 -------------------------------------------------------------------RPSDLIPELQGRL 193 (310)
T ss_dssp -------------------------------------------------------------------CGGGSCHHHHHTC
T ss_pred -------------------------------------------------------------------CcccCCHHHHhhC
Confidence 0013457899999
Q ss_pred ccccccCCCChHHHHHHHHH----HHHHHHHHhcCCCceeecCHHHHHHHHhcCCc------hhhHHHHHHHHHHHHHHH
Q 001355 983 DAIAVFQPLNFDLLAEKILR----EIQPKFQRAFGFEVLLEIDYEILVQILAATWL------SDRKKAIENWIENVVLRS 1052 (1093)
Q Consensus 983 d~~VvF~pld~~~l~~ii~~----~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~------~~~~r~ie~wve~vl~~~ 1052 (1093)
+.+|.|+|++.+++.+++.. .+....+.+...+..+.++++++++|+...|. ....|.+.+.++.++...
T Consensus 194 ~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~ 273 (310)
T 1ofh_A 194 PIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKI 273 (310)
T ss_dssp CEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHH
T ss_pred CceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhh
Confidence 98899999999999999974 23222222222566789999999999999884 235677888888887665
Q ss_pred HHH
Q 001355 1053 FYE 1055 (1093)
Q Consensus 1053 l~e 1055 (1093)
..+
T Consensus 274 ~~~ 276 (310)
T 1ofh_A 274 SFS 276 (310)
T ss_dssp HHH
T ss_pred hcC
Confidence 533
No 9
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.70 E-value=1.6e-16 Score=185.94 Aligned_cols=85 Identities=6% Similarity=0.129 Sum_probs=70.5
Q ss_pred ChHHHhhccccccccCCCChHHHHHHHH---HHHHHHHHHhcC-CCceeecCHHHHHHHHhcCCc-----hh-hHHHHHH
Q 001355 974 WLEDFFDQTDAIAVFQPLNFDLLAEKIL---REIQPKFQRAFG-FEVLLEIDYEILVQILAATWL-----SD-RKKAIEN 1043 (1093)
Q Consensus 974 ~~~efl~rId~~VvF~pld~~~l~~ii~---~~i~~~~~~~~~-~~~~L~Id~~vle~Ll~~~~~-----~~-~~r~ie~ 1043 (1093)
+.|+|++|++.+|.|++|+.+++.+|+. +.+...+.+.++ .++.|.|+++++++|+..++. ++ +.|.+++
T Consensus 319 lipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~ 398 (444)
T 1g41_A 319 LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHT 398 (444)
T ss_dssp SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHH
T ss_pred cchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHH
Confidence 4589999999999999999999999994 455555555554 688999999999999987653 33 8899999
Q ss_pred HHHHHHHHHHHHHHh
Q 001355 1044 WIENVVLRSFYEVRR 1058 (1093)
Q Consensus 1044 wve~vl~~~l~e~~~ 1058 (1093)
.|++++.....++-.
T Consensus 399 ~ie~~~~~~~~~~~~ 413 (444)
T 1g41_A 399 VMERLMDKISFSASD 413 (444)
T ss_dssp HHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhhccc
Confidence 999999998877753
No 10
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.67 E-value=1.5e-16 Score=178.27 Aligned_cols=225 Identities=13% Similarity=0.137 Sum_probs=156.6
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.++|++.++..+...+..... .+.++||+||+|||||.+|++||........+|+.+||+......
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l-- 68 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-----------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESL-- 68 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-----------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHH--
T ss_pred CCcEECCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHH--
Confidence 4589999999988888876631 224699999999999999999999887778899999998743210
Q ss_pred CccccCCCccccccc-cccch--hhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcE
Q 001355 772 NSIFDCQNIDFCDCK-LRGKV--LVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMI 848 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g-~~g~~--~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI 848 (1093)
. ...+||+..| |.|.. ..+.+. ...+++||||||+. ++...|..|+++|+++.+...++....-.+++
T Consensus 69 ---~-~~~lfg~~~g~~tg~~~~~~g~~~----~a~~g~L~LDEi~~-l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~r 139 (304)
T 1ojl_A 69 ---L-ESELFGHEKGAFTGADKRREGRFV----EADGGTLFLDEIGD-ISPLMQVRLLRAIQEREVQRVGSNQTISVDVR 139 (304)
T ss_dssp ---H-HHHHTCCCSSCCC---CCCCCHHH----HHTTSEEEEESCTT-CCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCE
T ss_pred ---H-HHHhcCccccccCchhhhhcCHHH----hcCCCEEEEecccc-CCHHHHHHHHHHHhcCEeeecCCcccccCCeE
Confidence 0 0234555443 22211 112232 22357999999999 99999999999999998876555433345678
Q ss_pred EEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCC
Q 001355 849 FVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDS 928 (1093)
Q Consensus 849 ~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~ 928 (1093)
||+|||.. -++ + +
T Consensus 140 iI~atn~~---------------l~~-~-----------v---------------------------------------- 152 (304)
T 1ojl_A 140 LIAATHRD---------------LAE-E-----------V---------------------------------------- 152 (304)
T ss_dssp EEEEESSC---------------HHH-H-----------H----------------------------------------
T ss_pred EEEecCcc---------------HHH-H-----------H----------------------------------------
Confidence 99999841 000 0 0
Q ss_pred CccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCC--hHHHHHHHHHHHH
Q 001355 929 PINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLN--FDLLAEKILREIQ 1005 (1093)
Q Consensus 929 ~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld--~~~l~~ii~~~i~ 1005 (1093)
....|.++|++|++ ..|.++|+. .+++..++...+.
T Consensus 153 -----------------------------------------~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 153 -----------------------------------------SAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp -----------------------------------------HHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred -----------------------------------------HhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 01257889999997 448899999 5888888888776
Q ss_pred HHHHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 001355 1006 PKFQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENVV 1049 (1093)
Q Consensus 1006 ~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~vl 1049 (1093)
....+... -...|++++++.|..+.|..+. |.+++.++..+
T Consensus 192 ~~~~~~~~--~~~~~s~~a~~~L~~~~wpGnv-ReL~~~l~~~~ 232 (304)
T 1ojl_A 192 RFAERNRK--VVKGFTPQAMDLLIHYDWPGNI-RELENAIERAV 232 (304)
T ss_dssp HHHHHTTC--CCCCBCHHHHHHHHHCCCSSHH-HHHHHHHHHHH
T ss_pred HHHHHhcc--CccCCCHHHHHHHHcCCCCCCH-HHHHHHHHHHH
Confidence 65554321 1257999999999999996443 34555555443
No 11
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.66 E-value=8.4e-16 Score=176.68 Aligned_cols=239 Identities=14% Similarity=0.153 Sum_probs=169.6
Q ss_pred CCCCHHHHHHHHHH-Hh-----------cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHH
Q 001355 676 EPFDPRDYKTLRIA-LA-----------EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIA 743 (1093)
Q Consensus 676 ~~~d~e~lk~L~~~-L~-----------e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lA 743 (1093)
|+++.+.+....+. +. ..++|++..+..+...+..... .+.+++++|++|+||+.+|
T Consensus 101 KP~~~~~L~~~i~~~l~~~~~~~~~~~~~~~ig~s~~~~~~~~~~~~~a~-----------~~~~vli~GesGtGKe~lA 169 (368)
T 3dzd_A 101 KPFSVERFLLTIKHAFEEYSKKAPPQEEIEFVGEHPKILEIKRLIPKIAK-----------SKAPVLITGESGTGKEIVA 169 (368)
T ss_dssp SSCCHHHHHHHHHHHHHHHSCCCCCCCCCCCCCCSHHHHHHHHHHHHHHT-----------SCSCEEEECCTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhcccccccccccchHHHHHHhhhhhhhc-----------cchhheEEeCCCchHHHHH
Confidence 67777766544433 32 2478999888888877776532 2346999999999999999
Q ss_pred HHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccc-cccch--hhhHHHHHHHhCCceEEEEcccccccCHH
Q 001355 744 SALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCK-LRGKV--LVDYIYQEFRSKPYSVVFLEDLDKAADPI 820 (1093)
Q Consensus 744 raLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g-~~g~~--~~~~l~eal~~~p~~VI~LDEVDkiad~~ 820 (1093)
++||....... .|+.+||+...... + ...+||+..| |.|.. ..+.+ ....+++||||||+. +++.
T Consensus 170 r~ih~~s~r~~-~fv~vnc~~~~~~~----~--~~~lfg~~~g~~tga~~~~~g~~----~~a~~gtlfldei~~-l~~~ 237 (368)
T 3dzd_A 170 RLIHRYSGRKG-AFVDLNCASIPQEL----A--ESELFGHEKGAFTGALTRKKGKL----ELADQGTLFLDEVGE-LDQR 237 (368)
T ss_dssp HHHHHHHCCCS-CEEEEESSSSCTTT----H--HHHHHEECSCSSSSCCCCEECHH----HHTTTSEEEEETGGG-SCHH
T ss_pred HHHHHhccccC-CcEEEEcccCChHH----H--HHHhcCccccccCCcccccCChH----hhcCCCeEEecChhh-CCHH
Confidence 99998875544 49999999753211 0 1356777655 33321 11233 334568999999999 9999
Q ss_pred HHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCC
Q 001355 821 VQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSG 900 (1093)
Q Consensus 821 vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~ 900 (1093)
.|..|+++|++|.++..+|......++++|++||.. . ++
T Consensus 238 ~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~---l------------~~-------------------------- 276 (368)
T 3dzd_A 238 VQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKN---L------------EE-------------------------- 276 (368)
T ss_dssp HHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSC---H------------HH--------------------------
T ss_pred HHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCC---H------------HH--------------------------
Confidence 999999999999999877655445578899999841 0 00
Q ss_pred CcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhh
Q 001355 901 MNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFD 980 (1093)
Q Consensus 901 ~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~ 980 (1093)
.-....|+++|++
T Consensus 277 -------------------------------------------------------------------~v~~g~fr~dL~~ 289 (368)
T 3dzd_A 277 -------------------------------------------------------------------EIKKGNFREDLYY 289 (368)
T ss_dssp -------------------------------------------------------------------HHHTTSSCHHHHH
T ss_pred -------------------------------------------------------------------HHHcCCccHHHHH
Confidence 0012268999999
Q ss_pred cccc-ccccCCCCh--HHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 001355 981 QTDA-IAVFQPLNF--DLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENV 1048 (1093)
Q Consensus 981 rId~-~VvF~pld~--~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~v 1048 (1093)
|+.. .|.++||.. +|+..++...+.....+... ....|++++++.|..+.|-.+. |.+++.|+..
T Consensus 290 rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~--~~~~~~~~a~~~L~~~~wpGNv-reL~n~i~~~ 357 (368)
T 3dzd_A 290 RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKK--NCFELSEETKEYLMKQEWKGNV-RELKNLIERA 357 (368)
T ss_dssp HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTC--CCCCBCHHHHHHHHTCCCTTHH-HHHHHHHHHH
T ss_pred HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCC--CCCCcCHHHHHHHHhCCCCcHH-HHHHHHHHHH
Confidence 9995 488999998 89999988888776665421 2367999999999999996543 3444444443
No 12
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.66 E-value=3.2e-16 Score=170.93 Aligned_cols=228 Identities=15% Similarity=0.172 Sum_probs=150.2
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.++|++.++..+...+..... .+.+++|+||+|||||++|++||+.+.....+|+.++|+.+....
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~-- 72 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL-- 72 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH--
T ss_pred ccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH--
Confidence 4578999999888887776532 113699999999999999999999887777889999998743110
Q ss_pred CccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEE
Q 001355 772 NSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFV 850 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~I 850 (1093)
+. ..++|...+ |.|... ...+.+....++|||||||++ ++...|..|+++|++|.+...++......+.+||
T Consensus 73 --~~--~~l~g~~~~~~~g~~~--~~~~~l~~a~~~~l~lDEi~~-l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI 145 (265)
T 2bjv_A 73 --LD--SELFGHEAGAFTGAQK--RHPGRFERADGGTLFLDELAT-APMMVQEKLLRVIEYGELERVGGSQPLQVNVRLV 145 (265)
T ss_dssp --HH--HHHHCCC-----------CCCCHHHHTTTSEEEEESGGG-SCHHHHHHHHHHHHHCEECCCCC--CEECCCEEE
T ss_pred --HH--HHhcCCcccccccccc--cccchhhhcCCcEEEEechHh-cCHHHHHHHHHHHHhCCeecCCCcccccCCeEEE
Confidence 00 123343322 111110 001122334568999999999 9999999999999999987655544444577899
Q ss_pred EecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCc
Q 001355 851 ATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPI 930 (1093)
Q Consensus 851 lTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~ 930 (1093)
+|||.. .++ + +
T Consensus 146 ~atn~~---------------~~~-~-----------~------------------------------------------ 156 (265)
T 2bjv_A 146 CATNAD---------------LPA-M-----------V------------------------------------------ 156 (265)
T ss_dssp EEESSC---------------HHH-H-----------H------------------------------------------
T ss_pred EecCcC---------------HHH-H-----------H------------------------------------------
Confidence 999851 000 0 0
Q ss_pred cchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHH
Q 001355 931 NSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPK 1007 (1093)
Q Consensus 931 ~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~ 1007 (1093)
....|.++|++|++ ..|.++|++. +++..++...+...
T Consensus 157 ---------------------------------------~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~ 197 (265)
T 2bjv_A 157 ---------------------------------------NEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQM 197 (265)
T ss_dssp ---------------------------------------HHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------HcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHH
Confidence 01256789999997 5689999987 67887777777665
Q ss_pred HHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 001355 1008 FQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENVV 1049 (1093)
Q Consensus 1008 ~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~vl 1049 (1093)
..+. +......+++++++.|..+.|..+. |.+++.++..+
T Consensus 198 ~~~~-~~~~~~~~~~~a~~~L~~~~~~gn~-reL~~~l~~~~ 237 (265)
T 2bjv_A 198 CREI-KLPLFPGFTERARETLLNYRWPGNI-RELKNVVERSV 237 (265)
T ss_dssp HHHT-TCSSCCCBCHHHHHHHHHSCCTTHH-HHHHHHHHHHH
T ss_pred HHHh-CCCcccCcCHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Confidence 4442 2222137999999999999996443 45666665543
No 13
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.65 E-value=6.9e-16 Score=178.50 Aligned_cols=226 Identities=16% Similarity=0.183 Sum_probs=163.3
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..++|++.++..+...+.+... .+.+++++|++|+||+.+|++|+....+...+|+.+||+......
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~-----------~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~-- 203 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISC-----------AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDI-- 203 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTT-----------CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHH--
T ss_pred hhhhhccHHhhHHHHHHHHhcC-----------CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHH--
Confidence 3578898888888887776421 235689999999999999999999988888999999999753211
Q ss_pred CccccCCCccccccc-cccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEE
Q 001355 772 NSIFDCQNIDFCDCK-LRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFV 850 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g-~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~I 850 (1093)
. ...+||+..| |.|... .-.+.+....+++||||||+. +++.+|..|+++|++|.++..+|......+++||
T Consensus 204 ---~-~~elfg~~~g~~tga~~--~~~g~~~~a~~gtlfldei~~-l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii 276 (387)
T 1ny5_A 204 ---F-EAELFGYEKGAFTGAVS--SKEGFFELADGGTLFLDEIGE-LSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRIL 276 (387)
T ss_dssp ---H-HHHHHCBCTTSSTTCCS--CBCCHHHHTTTSEEEEESGGG-CCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEE
T ss_pred ---H-HHHhcCCCCCCCCCccc--ccCCceeeCCCcEEEEcChhh-CCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEE
Confidence 0 0356666554 333211 011233345578999999999 9999999999999999999877765555688899
Q ss_pred EecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCCCc
Q 001355 851 ATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDSPI 930 (1093)
Q Consensus 851 lTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~ 930 (1093)
++||.. -++ +
T Consensus 277 ~at~~~---------------l~~-~------------------------------------------------------ 286 (387)
T 1ny5_A 277 AATNRN---------------IKE-L------------------------------------------------------ 286 (387)
T ss_dssp EEESSC---------------HHH-H------------------------------------------------------
T ss_pred EeCCCC---------------HHH-H------------------------------------------------------
Confidence 999951 000 0
Q ss_pred cchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccc-cccccCCCCh--HHHHHHHHHHHHHH
Q 001355 931 NSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTD-AIAVFQPLNF--DLLAEKILREIQPK 1007 (1093)
Q Consensus 931 ~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId-~~VvF~pld~--~~l~~ii~~~i~~~ 1007 (1093)
+ ....|.++|++|+. ..|.++||.. +|+..++...+...
T Consensus 287 -------------------~-------------------~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~ 328 (387)
T 1ny5_A 287 -------------------V-------------------KEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKF 328 (387)
T ss_dssp -------------------H-------------------HTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHH
T ss_pred -------------------H-------------------HcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHH
Confidence 0 01268899999998 5588899987 88888888888776
Q ss_pred HHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 001355 1008 FQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENV 1048 (1093)
Q Consensus 1008 ~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~v 1048 (1093)
..+.... ...+++++++.|..+.|-.+ -|.+++.|+..
T Consensus 329 ~~~~~~~--~~~~~~~a~~~l~~~~wpGN-vreL~~~i~~~ 366 (387)
T 1ny5_A 329 SRKYAKE--VEGFTKSAQELLLSYPWYGN-VRELKNVIERA 366 (387)
T ss_dssp HHHTTCC--CCEECHHHHHHHHHSCCTTH-HHHHHHHHHHH
T ss_pred HHHcCCC--CCCCCHHHHHHHHhCCCCcH-HHHHHHHHHHH
Confidence 6554211 24699999999999999533 23455555443
No 14
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.63 E-value=1.4e-15 Score=152.13 Aligned_cols=140 Identities=22% Similarity=0.222 Sum_probs=118.6
Q ss_pred hhcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhccCCCCCC
Q 001355 10 QCLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFDRLPSSKS 89 (1093)
Q Consensus 10 q~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~rlp~~~~ 89 (1093)
.+||+++..+|..|+.+|+++||.+|+|.|++.+||..+.|+.+.++.+++.+ ..+|+..+...|+++|++.+
T Consensus 4 ~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~-------~~~l~~~l~~~l~~~p~~~~ 76 (148)
T 1khy_A 4 DRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGIN-------AGQLRTDINQALNRLPQVEG 76 (148)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCC-------HHHHHHHHHHHHTTSCCC--
T ss_pred hhhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCC-------HHHHHHHHHHHHHhCCCCCC
Confidence 47999999999999999999999999999999999999999999999999854 56788899999999998765
Q ss_pred C-CCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhc-CchhhhhhcccCCCcHHHHHhh
Q 001355 90 V-EFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILD-DPMASRVFGEAGFLSRDIKLAI 167 (1093)
Q Consensus 90 ~-~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsild-dp~vsrv~~eagf~s~~vk~~i 167 (1093)
+ ..|++|+.+..+|++|+...++..++ +|..|||+++||+ |..++++|++.|.+...++..+
T Consensus 77 ~~~~~~~s~~~~~vl~~A~~~a~~~~~~----------------~i~~ehlLlall~~~~~~~~~L~~~gi~~~~l~~~l 140 (148)
T 1khy_A 77 TGGDVQPSQDLVRVLNLCDKLAQKRGDN----------------FISSELFVLAALESRGTLADILKAAGATTANITQAI 140 (148)
T ss_dssp -----CBCHHHHHHHHHHHHHHHHHTCS----------------SBCHHHHHHHHHTSCHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCCcCcCHHHHHHHHHHHHHHHHcCCC----------------eecHHHHHHHHHcCCcHHHHHHHHcCCCHHHHHHHH
Confidence 3 56899999999999998776664332 7999999999996 4458899999999999999999
Q ss_pred ccCCC
Q 001355 168 IQPSV 172 (1093)
Q Consensus 168 ~~~~~ 172 (1093)
.+.++
T Consensus 141 ~~~rg 145 (148)
T 1khy_A 141 EQMRG 145 (148)
T ss_dssp HC---
T ss_pred HHHHC
Confidence 87653
No 15
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.61 E-value=1.6e-15 Score=151.90 Aligned_cols=136 Identities=18% Similarity=0.123 Sum_probs=121.0
Q ss_pred hhcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhccCCCCCC
Q 001355 10 QCLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFDRLPSSKS 89 (1093)
Q Consensus 10 q~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~rlp~~~~ 89 (1093)
..||++++.+|..|+.+|+++||.+++|.|++.+||..+.|+...++.+++.+ ...|+..+...|++.|. .+
T Consensus 6 ~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd-------~~~l~~~l~~~l~~~~~-~~ 77 (145)
T 3fes_A 6 NRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFT-------EAYLEGKIVDMEGKGEE-IS 77 (145)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCC-------HHHHHHHHHHHHCCCSC-CC
T ss_pred cccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCC-------HHHHHHHHHHHHhcCCC-CC
Confidence 46999999999999999999999999999999999999999999999999853 46688888899999998 33
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCch--hhhhhcccCCCcHHHHHhh
Q 001355 90 VEFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDPM--ASRVFGEAGFLSRDIKLAI 167 (1093)
Q Consensus 90 ~~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp~--vsrv~~eagf~s~~vk~~i 167 (1093)
..|++|+.+..+|.+|+...++..++ +|+.|||+++||+++. +.++|++.|.+...++.+|
T Consensus 78 -~~~~~s~~~~~vl~~A~~~A~~~~~~----------------~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i 140 (145)
T 3fes_A 78 -EDIVLSPRSKQILELSGMFANKLKTN----------------YIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLT 140 (145)
T ss_dssp -SCCEECHHHHHHHHHHHHHHHHTTCS----------------SBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHH
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHcCCC----------------cccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHH
Confidence 67999999999999998776665443 7999999999998763 8899999999999999998
Q ss_pred ccC
Q 001355 168 IQP 170 (1093)
Q Consensus 168 ~~~ 170 (1093)
.+.
T Consensus 141 ~~~ 143 (145)
T 3fes_A 141 IDM 143 (145)
T ss_dssp HHT
T ss_pred HHH
Confidence 864
No 16
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.61 E-value=2.4e-15 Score=150.70 Aligned_cols=138 Identities=13% Similarity=0.161 Sum_probs=122.4
Q ss_pred hhhcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhccCCCCC
Q 001355 9 RQCLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFDRLPSSK 88 (1093)
Q Consensus 9 ~q~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~rlp~~~ 88 (1093)
-..||++++.+|..|+.+|+++||.+++|.|++.+||..+.|...+++.+++.+ ..+|+..+...+++.|...
T Consensus 4 ~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~-------~~~l~~~l~~~l~~~~~~~ 76 (146)
T 3fh2_A 4 FERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGIS-------LDAVRQEVEEIIGQGSQPT 76 (146)
T ss_dssp GGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCC-------HHHHHHHHHHHHCCCSCCC
T ss_pred hhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCC-------HHHHHHHHHHHhccCCCCC
Confidence 357999999999999999999999999999999999999999999999999853 5678888899999999854
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCc--hhhhhhcccCCCcHHHHHh
Q 001355 89 SVEFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDP--MASRVFGEAGFLSRDIKLA 166 (1093)
Q Consensus 89 ~~~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp--~vsrv~~eagf~s~~vk~~ 166 (1093)
+ ..|++|+.+..+|.+|+...++..++ +|+.|||+++|++++ .+.++|++.|++...++.+
T Consensus 77 ~-~~~~~s~~~~~vL~~A~~~a~~~~~~----------------~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~ 139 (146)
T 3fh2_A 77 T-GHIPFTPRAKKVLELSLREGLQMGHK----------------YIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQ 139 (146)
T ss_dssp C-SCCCBCHHHHHHHHHHHHHHHHTTCS----------------SBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHH
T ss_pred c-CCCcCCHHHHHHHHHHHHHHHHcCCC----------------cCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHH
Confidence 4 67999999999999998776665443 799999999999765 5899999999999999999
Q ss_pred hccC
Q 001355 167 IIQP 170 (1093)
Q Consensus 167 i~~~ 170 (1093)
|.+.
T Consensus 140 l~~~ 143 (146)
T 3fh2_A 140 VIQL 143 (146)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 17
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.58 E-value=5.1e-14 Score=156.29 Aligned_cols=223 Identities=12% Similarity=0.110 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-------hcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 680 PRDYKTLRIALAEKVGWQDEAICTISQAVSRWR-------IGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 680 ~e~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~r-------sg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
...++.+.+.|.+.|+|+++++..|...+.... .|...+ +...+++|+||+|||||++|++||+.+..
T Consensus 19 ~~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-----~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 19 GSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-----TPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp HTTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-----CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-----CCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 346678888999899999999999987776432 232222 23357999999999999999999998854
Q ss_pred C----CCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc---------CH
Q 001355 753 N----KGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA---------DP 819 (1093)
Q Consensus 753 s----~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia---------d~ 819 (1093)
. ..+++.+++.... ..++|... ..+.+.+....++||||||+|. + +.
T Consensus 94 ~~~~~~~~~~~~~~~~l~-----------~~~~g~~~--------~~~~~~~~~~~~~vl~iDEid~-l~~~~~~~~~~~ 153 (309)
T 3syl_A 94 LGYVRKGHLVSVTRDDLV-----------GQYIGHTA--------PKTKEVLKRAMGGVLFIDEAYY-LYRPDNERDYGQ 153 (309)
T ss_dssp TTSSSSCCEEEECGGGTC-----------CSSTTCHH--------HHHHHHHHHHTTSEEEEETGGG-SCCCC---CCTH
T ss_pred cCCcCCCcEEEEcHHHhh-----------hhcccccH--------HHHHHHHHhcCCCEEEEEChhh-hccCCCcccccH
Confidence 3 3368888866431 12222211 2334444444568999999997 5 89
Q ss_pred HHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCC
Q 001355 820 IVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGS 899 (1093)
Q Consensus 820 ~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~ 899 (1093)
.+++.|++.|+++. .+.+||+|+|.. + +.
T Consensus 154 ~~~~~Ll~~l~~~~-----------~~~~~i~~~~~~----------------~--~~---------------------- 182 (309)
T 3syl_A 154 EAIEILLQVMENNR-----------DDLVVILAGYAD----------------R--ME---------------------- 182 (309)
T ss_dssp HHHHHHHHHHHHCT-----------TTCEEEEEECHH----------------H--HH----------------------
T ss_pred HHHHHHHHHHhcCC-----------CCEEEEEeCChH----------------H--HH----------------------
Confidence 99999999999652 467789988730 0 00
Q ss_pred CCcccccCCCCCCCchhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHh
Q 001355 900 GMNVKVTPRKENSNPESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFF 979 (1093)
Q Consensus 900 ~~~~~~~~~~~~s~~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl 979 (1093)
.++ ...+.|.
T Consensus 183 ------------------------------------------~~~----------------------------~~~~~l~ 192 (309)
T 3syl_A 183 ------------------------------------------NFF----------------------------QSNPGFR 192 (309)
T ss_dssp ------------------------------------------HHH----------------------------HHSTTHH
T ss_pred ------------------------------------------HHH----------------------------hhCHHHH
Confidence 000 0125788
Q ss_pred hccccccccCCCChHHHHHHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhc-------CCchhhHHHHHHHHHHHHHHH
Q 001355 980 DQTDAIAVFQPLNFDLLAEKILREIQPKFQRAFGFEVLLEIDYEILVQILAA-------TWLSDRKKAIENWIENVVLRS 1052 (1093)
Q Consensus 980 ~rId~~VvF~pld~~~l~~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~-------~~~~~~~r~ie~wve~vl~~~ 1052 (1093)
.|++.+|.|+|++.+++.+++...+... .+.+++++++.|... .|..+ .|.+.+.++..+...
T Consensus 193 ~R~~~~i~~~~~~~~~~~~il~~~l~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~gn-~r~l~~~l~~a~~~~ 262 (309)
T 3syl_A 193 SRIAHHIEFPDYSDEELFEIAGHMLDDQ---------NYQMTPEAETALRAYIGLRRNQPHFAN-ARSIRNALDRARLRQ 262 (309)
T ss_dssp HHEEEEEEECCCCHHHHHHHHHHHHHHT---------TCEECHHHHHHHHHHHHHHTTSSSCCH-HHHHHHHHHHHHHHH
T ss_pred HhCCeEEEcCCcCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHHhccCCCCCc-HHHHHHHHHHHHHHH
Confidence 8999999999999999999998877651 257899999999886 66544 456777777776655
Q ss_pred HHHHHh
Q 001355 1053 FYEVRR 1058 (1093)
Q Consensus 1053 l~e~~~ 1058 (1093)
..++..
T Consensus 263 ~~r~~~ 268 (309)
T 3syl_A 263 ANRLFT 268 (309)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 544443
No 18
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.56 E-value=7.5e-15 Score=147.16 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=118.3
Q ss_pred hhcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhccCCCCCC
Q 001355 10 QCLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFDRLPSSKS 89 (1093)
Q Consensus 10 q~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~rlp~~~~ 89 (1093)
.+||++++.+|..|+.+|+++||++|+|.|++.+||..+.|++++++.+++.+ ..+|+..+...|+++|...
T Consensus 4 ~~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~-------~~~l~~~l~~~l~~~~~~~- 75 (150)
T 2y1q_A 4 GRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLG-------SEKIQKEVESLIGRAQEMS- 75 (150)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCC-------HHHHHHHHHHHHCCC-----
T ss_pred hhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCC-------HHHHHHHHHHHhccCCccc-
Confidence 57999999999999999999999999999999999999999999999999854 5678888899999999865
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCc-h-hhhhhcccCCCcHHHHHhh
Q 001355 90 VEFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDP-M-ASRVFGEAGFLSRDIKLAI 167 (1093)
Q Consensus 90 ~~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp-~-vsrv~~eagf~s~~vk~~i 167 (1093)
..|++|+.+..+|++|+...++..++ +|..|||+++||+++ . ..++|++.|.+...++..|
T Consensus 76 -~~~~~s~~~~~vL~~A~~~A~~~~~~----------------~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i 138 (150)
T 2y1q_A 76 -QTIHYTPRAKKVIELSMDEARKLGHS----------------YVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQV 138 (150)
T ss_dssp --CCEECHHHHHHHHHHHHHHHHTTCS----------------SBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHH
T ss_pred -ccCCCCHHHHHHHHHHHHHHHHcCCC----------------eecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHH
Confidence 47899999999999998776665433 799999999999755 3 4699999999999999998
Q ss_pred ccCCC
Q 001355 168 IQPSV 172 (1093)
Q Consensus 168 ~~~~~ 172 (1093)
++.++
T Consensus 139 ~~~~g 143 (150)
T 2y1q_A 139 LQLLG 143 (150)
T ss_dssp HHHHH
T ss_pred HHHHC
Confidence 87643
No 19
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.52 E-value=7e-14 Score=168.52 Aligned_cols=234 Identities=17% Similarity=0.229 Sum_probs=149.5
Q ss_pred HHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 684 KTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 684 k~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..+.+.|.+.++|++++...+...+.........+ +..++|+||+|||||++|++||..+ ..+|+.++|+
T Consensus 73 ~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~~-------g~~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~~ 142 (543)
T 3m6a_A 73 KEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLK-------GPILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISLG 142 (543)
T ss_dssp TTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCC-------SCEEEEESSSSSSHHHHHHHHHHHH---TCEEEEECCC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccCC-------CCEEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEec
Confidence 34456678899999999999887766544333221 2369999999999999999999998 5688999987
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHHHhC--CceEEEEcccccccCHH----HHHHHhhhhcCCe---E
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSK--PYSVVFLEDLDKAADPI----VQSSLTKAISTGK---F 834 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~--p~~VI~LDEVDkiad~~----vq~~Ll~aLe~Gr---~ 834 (1093)
..... ..++|....|+|... +.+...+... ...||||||||+ +... .++.|++.|+.+. |
T Consensus 143 ~~~~~---------~~~~g~~~~~ig~~~-~~~~~~~~~a~~~~~vl~lDEid~-l~~~~~~~~~~~LL~~ld~~~~~~~ 211 (543)
T 3m6a_A 143 GVRDE---------SEIRGHRRTYVGAMP-GRIIQGMKKAGKLNPVFLLDEIDK-MSSDFRGDPSSAMLEVLDPEQNSSF 211 (543)
T ss_dssp C------------------------------CHHHHHHTTCSSSEEEEEEESSS-CC---------CCGGGTCTTTTTBC
T ss_pred ccchh---------hhhhhHHHHHhccCc-hHHHHHHHHhhccCCEEEEhhhhh-hhhhhccCHHHHHHHHHhhhhccee
Confidence 64321 122222222333211 1222222222 334999999999 8877 5699999998654 3
Q ss_pred ecC-CCeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCC
Q 001355 835 TDS-YGRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSN 913 (1093)
Q Consensus 835 ~d~-~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~ 913 (1093)
.+. .+..+++.+++||+|||..
T Consensus 212 ~~~~~~~~~~~~~v~iI~ttN~~--------------------------------------------------------- 234 (543)
T 3m6a_A 212 SDHYIEETFDLSKVLFIATANNL--------------------------------------------------------- 234 (543)
T ss_dssp CCSSSCCCCBCSSCEEEEECSST---------------------------------------------------------
T ss_pred ecccCCeeecccceEEEeccCcc---------------------------------------------------------
Confidence 332 2466788899999999841
Q ss_pred chhhhcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCCh
Q 001355 914 PESRRKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNF 993 (1093)
Q Consensus 914 ~~~~~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~ 993 (1093)
..+.+.|++|++ +|.|++++.
T Consensus 235 ----------------------------------------------------------~~l~~aL~~R~~-vi~~~~~~~ 255 (543)
T 3m6a_A 235 ----------------------------------------------------------ATIPGPLRDRME-IINIAGYTE 255 (543)
T ss_dssp ----------------------------------------------------------TTSCHHHHHHEE-EEECCCCCH
T ss_pred ----------------------------------------------------------ccCCHHHHhhcc-eeeeCCCCH
Confidence 023478999995 789999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CceeecCHHHHHHHHh-cCCchhhHHHHHHHHHHHHHHHHHH
Q 001355 994 DLLAEKILREIQPKFQRAFGF-EVLLEIDYEILVQILA-ATWLSDRKKAIENWIENVVLRSFYE 1055 (1093)
Q Consensus 994 ~~l~~ii~~~i~~~~~~~~~~-~~~L~Id~~vle~Ll~-~~~~~~~~r~ie~wve~vl~~~l~e 1055 (1093)
++..+++...+...+.+-.+. ...+.|++++++.|+. +.|.. +.|.+++.|+.++.....+
T Consensus 256 ~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~-~vR~L~~~i~~~~~~aa~~ 318 (543)
T 3m6a_A 256 IEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA-GVRSLERQLAAICRKAAKA 318 (543)
T ss_dssp HHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh-chhHHHHHHHHHHHHHHHH
Confidence 999999988765544444332 3368899999999887 46632 3345555555555444333
No 20
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.49 E-value=8.7e-14 Score=143.30 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=105.3
Q ss_pred hhhcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhccCCCCC
Q 001355 9 RQCLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFDRLPSSK 88 (1093)
Q Consensus 9 ~q~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~rlp~~~ 88 (1093)
-.+||++++.+|..|+.+|+++||++|+|.|++.+||..+.|+...++.+++.+ ..+|...+. .|+++|++.
T Consensus 22 ~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd-------~~~l~~~l~-~l~~~p~~~ 93 (171)
T 3zri_A 22 IAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLE-------VDQVKQAIA-STYSREQVL 93 (171)
T ss_dssp HHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCC-------HHHHHHHHH-HHSCCCCCC
T ss_pred HHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCC-------HHHHHHHHH-HHhcCCCCC
Confidence 358999999999999999999999999999999999999999999999999854 567888888 999999765
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhh-cCCCCcchhhhhccccccceeeehhHHHHHHHhcCchhhhhh
Q 001355 89 SVEFPPISNSLMAAIKRSQAQQR-RNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDPMASRVF 153 (1093)
Q Consensus 89 ~~~~p~~Sn~l~aa~kraqa~qr-r~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp~vsrv~ 153 (1093)
+ ..|++|+.+..+|++|+...+ +..++ +|..|||+++||+|+ .++++
T Consensus 94 ~-~~~~~S~~l~~vL~~A~~~A~l~~gd~----------------~I~teHLLLALl~~~-~~~~~ 141 (171)
T 3zri_A 94 D-TYPAFSPLLVELLQEAWLLSSTELEQA----------------ELRSGAIFLAALTRA-DRYLS 141 (171)
T ss_dssp S-SCCEECHHHHHHHHHHHHHHHTTTCCS----------------SBCHHHHHHHHHHTH-HHHSC
T ss_pred C-CCCCcCHHHHHHHHHHHHHHHHHcCCC----------------EEcHHHHHHHHHhCh-hhhHH
Confidence 4 679999999999999988877 65544 799999999999998 44443
No 21
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.49 E-value=9.6e-14 Score=137.97 Aligned_cols=133 Identities=24% Similarity=0.225 Sum_probs=115.5
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHHhhccC-CCCC-C
Q 001355 12 LSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGVAFDRL-PSSK-S 89 (1093)
Q Consensus 12 lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~aL~rl-p~~~-~ 89 (1093)
||++++.+|..|+.+|+++||.+++|.|++.+||..+. .+.++.+++.+ ..+|+..+...|+++ |++. +
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~--~~~iL~~~g~~-------~~~l~~~l~~~l~~~~p~~~~~ 72 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVD-------LVALRQELEAFIEQTTPVLPAS 72 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHH--HHHHHHHTTCC-------HHHHHHHHHHHHHHHSCBCCSS
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCch--HHHHHHHcCCC-------HHHHHHHHHHHHHhcCCCCCCC
Confidence 79999999999999999999999999999999998773 88899999853 567888888999997 9765 2
Q ss_pred C--CCCCCcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCc--hhhhhhcccCCCcHHHHH
Q 001355 90 V--EFPPISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDP--MASRVFGEAGFLSRDIKL 165 (1093)
Q Consensus 90 ~--~~p~~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp--~vsrv~~eagf~s~~vk~ 165 (1093)
+ ..|++|+.+..+|++|+...++..++ +|..+||+++|++++ .++++|++.|.+...++.
T Consensus 73 ~~~~~~~~s~~~~~~l~~A~~~A~~~~~~----------------~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~ 136 (143)
T 1k6k_A 73 EEERDTQPTLSFQRVLQRAVFHVQSSGRN----------------EVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVN 136 (143)
T ss_dssp CSCCSCEECHHHHHHHHHHHHHHHSSSCS----------------CBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCCC----------------ccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHH
Confidence 1 46999999999999998887775443 799999999999866 378999999999999998
Q ss_pred hhcc
Q 001355 166 AIIQ 169 (1093)
Q Consensus 166 ~i~~ 169 (1093)
.|.+
T Consensus 137 ~i~~ 140 (143)
T 1k6k_A 137 FISH 140 (143)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8764
No 22
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.46 E-value=2.9e-12 Score=144.25 Aligned_cols=181 Identities=10% Similarity=0.122 Sum_probs=132.1
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..++|+++++..+...+...+.... ....+||+||+|||||.+|++||+.+ ..+|+.+++.....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~--------~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~---- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNE--------CLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIEK---- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTS--------CCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCCS----
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCC--------CCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhccc----
Confidence 4689999999999998887754211 12359999999999999999999987 56788888764210
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHh-CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCC-------eEee
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS-KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYG-------RDVS 843 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~-~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G-------~~V~ 843 (1093)
.+.+.+.+.. ..++|||||||+. +++..|..|++.++++.+....+ ..++
T Consensus 94 ---------------------~~~~~~~~~~~~~~~vl~lDEi~~-l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 94 ---------------------SGDLAAILTNLSEGDILFIDEIHR-LSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp ---------------------HHHHHHHHHTCCTTCEEEEETGGG-CCHHHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred ---------------------hhHHHHHHHhccCCCEEEEechhh-cCHHHHHHHHHHHHhccchhhcccCccccceecC
Confidence 1223333332 4568999999999 99999999999999987643211 1233
Q ss_pred cCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCC
Q 001355 844 ISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRT 923 (1093)
Q Consensus 844 l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~ 923 (1093)
+.+.+||++||..
T Consensus 152 ~~~~~~i~atn~~------------------------------------------------------------------- 164 (338)
T 3pfi_A 152 LPKFTLIGATTRA------------------------------------------------------------------- 164 (338)
T ss_dssp CCCCEEEEEESCG-------------------------------------------------------------------
T ss_pred CCCeEEEEeCCCc-------------------------------------------------------------------
Confidence 3456777777730
Q ss_pred CCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHHHHH
Q 001355 924 DDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKILRE 1003 (1093)
Q Consensus 924 ~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii~~~ 1003 (1093)
..+.++|++|++.++.|+|++.+++.+++...
T Consensus 165 ------------------------------------------------~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~ 196 (338)
T 3pfi_A 165 ------------------------------------------------GMLSNPLRDRFGMQFRLEFYKDSELALILQKA 196 (338)
T ss_dssp ------------------------------------------------GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred ------------------------------------------------cccCHHHHhhcCEEeeCCCcCHHHHHHHHHHH
Confidence 02456889999999999999999998888765
Q ss_pred HHHHHHHhcCCCceeecCHHHHHHHHhcCCc
Q 001355 1004 IQPKFQRAFGFEVLLEIDYEILVQILAATWL 1034 (1093)
Q Consensus 1004 i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~ 1034 (1093)
+.. .+ +.+++++++.|+. .|.
T Consensus 197 ~~~-------~~--~~~~~~~~~~l~~-~~~ 217 (338)
T 3pfi_A 197 ALK-------LN--KTCEEKAALEIAK-RSR 217 (338)
T ss_dssp HHH-------TT--CEECHHHHHHHHH-TTT
T ss_pred HHh-------cC--CCCCHHHHHHHHH-HHC
Confidence 543 12 5689999999998 664
No 23
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.39 E-value=6.7e-12 Score=140.00 Aligned_cols=127 Identities=11% Similarity=0.134 Sum_probs=91.1
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.++|++.++..+...+........ .+.+++|+||+|+|||.+|++||+.+ ..+|+.+++.....
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~--------~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~---- 76 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKE--------PLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEK---- 76 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCS--------CCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCS----
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCC--------CCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCC----
Confidence 4589999999999888876653211 11368999999999999999999987 45778787764210
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHh--CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCC-------eEe
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS--KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYG-------RDV 842 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~--~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G-------~~V 842 (1093)
...+.+.+.. ....+||||||+. ++...|..|+++++++.+....| ...
T Consensus 77 ---------------------~~~l~~~l~~~~~~~~~l~lDEi~~-l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~ 134 (324)
T 1hqc_A 77 ---------------------PGDLAAILANSLEEGDILFIDEIHR-LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRL 134 (324)
T ss_dssp ---------------------HHHHHHHHTTTCCTTCEEEETTTTS-CCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred ---------------------hHHHHHHHHHhccCCCEEEEECCcc-cccchHHHHHHHHHhhhhHHhcccccccccccc
Confidence 1223344443 4567999999999 99999999999999987653221 122
Q ss_pred ecCCcEEEEecCC
Q 001355 843 SISGMIFVATSTI 855 (1093)
Q Consensus 843 ~l~naI~IlTSN~ 855 (1093)
...+.++|++||.
T Consensus 135 ~~~~~~~i~~t~~ 147 (324)
T 1hqc_A 135 ELPRFTLIGATTR 147 (324)
T ss_dssp ECCCCEEEEEESC
T ss_pred CCCCEEEEEeCCC
Confidence 3346677887773
No 24
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.35 E-value=1.8e-12 Score=129.10 Aligned_cols=115 Identities=10% Similarity=0.046 Sum_probs=85.5
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.++|++.++..+...+..... .+.+++|+||+|||||.+|++||+.......+|+ ++|+.....
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--- 65 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSE-----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--- 65 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTT-----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS---
T ss_pred CCceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc---
Confidence 3579999999998888877632 2247999999999999999999998877788999 999864220
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEE
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVA 851 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~Il 851 (1093)
. ...+.+.....++|||||||. +++..|..|+++|+... .+..+|+
T Consensus 66 --------------~--------~~~~~~~~a~~g~l~ldei~~-l~~~~q~~Ll~~l~~~~-----------~~~~~I~ 111 (145)
T 3n70_A 66 --------------P--------QLNDFIALAQGGTLVLSHPEH-LTREQQYHLVQLQSQEH-----------RPFRLIG 111 (145)
T ss_dssp --------------S--------CHHHHHHHHTTSCEEEECGGG-SCHHHHHHHHHHHHSSS-----------CSSCEEE
T ss_pred --------------h--------hhhcHHHHcCCcEEEEcChHH-CCHHHHHHHHHHHhhcC-----------CCEEEEE
Confidence 0 112222233457999999999 99999999999994321 2456899
Q ss_pred ecCC
Q 001355 852 TSTI 855 (1093)
Q Consensus 852 TSN~ 855 (1093)
|||.
T Consensus 112 ~t~~ 115 (145)
T 3n70_A 112 IGDT 115 (145)
T ss_dssp EESS
T ss_pred ECCc
Confidence 9985
No 25
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.31 E-value=1.1e-11 Score=147.54 Aligned_cols=146 Identities=19% Similarity=0.082 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEe
Q 001355 681 RDYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHV 760 (1093)
Q Consensus 681 e~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~i 760 (1093)
+.+..+...|.+.|+||++++..+..++... .++||+||||||||++|++||..+ +...+|..+
T Consensus 11 ~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~---------------~~VLL~GpPGtGKT~LAraLa~~l-~~~~~f~~~ 74 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYERSHAIRLCLLAALSG---------------ESVFLLGPPGIAKSLIARRLKFAF-QNARAFEYL 74 (500)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT---------------CEEEEECCSSSSHHHHHHHGGGGB-SSCCEEEEE
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC---------------CeeEeecCchHHHHHHHHHHHHHH-hhhhHHHHH
Confidence 5778899999999999999987776655321 269999999999999999999877 445567777
Q ss_pred ecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhC--CceEEEEcccccccCHHHHHHHhhhhcCCeEecCC
Q 001355 761 DVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSK--PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSY 838 (1093)
Q Consensus 761 d~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~--p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~ 838 (1093)
++..... ..++|...++... ..+.+..+.... ...|||||||++ +++.+|+.|+++|++|.++. .
T Consensus 75 ~~~~~t~----------~dL~G~~~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r-~~~~~q~~LL~~lee~~v~i-~ 141 (500)
T 3nbx_X 75 MTRFSTP----------EEVFGPLSIQALK-DEGRYERLTSGYLPEAEIVFLDEIWK-AGPAILNTLLTAINERQFRN-G 141 (500)
T ss_dssp CCTTCCH----------HHHHCCBC-----------CBCCTTSGGGCSEEEEESGGG-CCHHHHHHHHHHHHSSEEEC-S
T ss_pred HHhcCCH----------HHhcCcccHHHHh-hchhHHhhhccCCCcceeeeHHhHhh-hcHHHHHHHHHHHHHHhccC-C
Confidence 7653110 1222211110000 000110000000 135999999999 99999999999999999987 4
Q ss_pred CeEeecCCcEEEEecCC
Q 001355 839 GRDVSISGMIFVATSTI 855 (1093)
Q Consensus 839 G~~V~l~naI~IlTSN~ 855 (1093)
|....+..-++|++||.
T Consensus 142 G~~~~~~~~~iI~ATN~ 158 (500)
T 3nbx_X 142 AHVEKIPMRLLVAASNE 158 (500)
T ss_dssp SSEEECCCCEEEEEESS
T ss_pred CCcCCcchhhhhhcccc
Confidence 55566655567888884
No 26
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.30 E-value=8.6e-12 Score=140.25 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
.+..+...+...++||++++..+..++... .+++|+||+|||||++|++||+.+ ..+|+.++
T Consensus 17 ~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~---------------~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~ 78 (331)
T 2r44_A 17 KIKEVIDEVGKVVVGQKYMINRLLIGICTG---------------GHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQ 78 (331)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHHT---------------CCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHHHhccceeCcHHHHHHHHHHHHcC---------------CeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEe
Confidence 566778888899999999988877766531 159999999999999999999987 45688888
Q ss_pred cCCccccCCCCccccCCCcccccc--ccccchhhhHHHHHHHhC--CceEEEEcccccccCHHHHHHHhhhhcCCeEecC
Q 001355 762 VSSEQRVSQPNSIFDCQNIDFCDC--KLRGKVLVDYIYQEFRSK--PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDS 837 (1093)
Q Consensus 762 ~s~~~~~~~~~si~~~~~l~G~~~--g~~g~~~~~~l~eal~~~--p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~ 837 (1093)
+...... ..++|... ...|. + ..... ...|||||||++ +++..|+.|+++++++.+..
T Consensus 79 ~~~~~~~---------~~l~g~~~~~~~~~~-~------~~~~g~l~~~vl~iDEi~~-~~~~~~~~Ll~~l~~~~~~~- 140 (331)
T 2r44_A 79 FTPDLLP---------SDLIGTMIYNQHKGN-F------EVKKGPVFSNFILADEVNR-SPAKVQSALLECMQEKQVTI- 140 (331)
T ss_dssp CCTTCCH---------HHHHEEEEEETTTTE-E------EEEECTTCSSEEEEETGGG-SCHHHHHHHHHHHHHSEEEE-
T ss_pred cCCCCCh---------hhcCCceeecCCCCc-e------EeccCcccccEEEEEcccc-CCHHHHHHHHHHHhcCceee-
Confidence 7531100 00111100 00000 0 00000 136999999999 99999999999999998876
Q ss_pred CCeEeecC-CcEEEEecCC
Q 001355 838 YGRDVSIS-GMIFVATSTI 855 (1093)
Q Consensus 838 ~G~~V~l~-naI~IlTSN~ 855 (1093)
.|...... +.+||+|+|.
T Consensus 141 ~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 141 GDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp TTEEEECCSSCEEEEEECT
T ss_pred CCEEEECCCCEEEEEecCC
Confidence 34444443 4566667763
No 27
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.26 E-value=2.7e-11 Score=142.70 Aligned_cols=190 Identities=13% Similarity=0.187 Sum_probs=121.5
Q ss_pred cccCccHHHH---HHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcccc
Q 001355 692 EKVGWQDEAI---CTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRV 768 (1093)
Q Consensus 692 e~ViGQdeai---~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~ 768 (1093)
+.++||++++ ..+...|...+. ..++|+||+|||||++|++||+.+ ..+|+.+++....
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~-------------~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~-- 87 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHL-------------HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSG-- 87 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCC-------------CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCC--
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCC-------------cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCC--
Confidence 4689999998 666666654321 269999999999999999999987 5678877754310
Q ss_pred CCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcE
Q 001355 769 SQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMI 848 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI 848 (1093)
. ...+ ................|||||||+. ++...|+.|++.|++|. .+
T Consensus 88 --------------~-~~ir--~~~~~a~~~~~~~~~~iLfIDEI~~-l~~~~q~~LL~~le~~~-------------v~ 136 (447)
T 3pvs_A 88 --------------V-KEIR--EAIERARQNRNAGRRTILFVDEVHR-FNKSQQDAFLPHIEDGT-------------IT 136 (447)
T ss_dssp --------------H-HHHH--HHHHHHHHHHHTTCCEEEEEETTTC-C------CCHHHHHTTS-------------CE
T ss_pred --------------H-HHHH--HHHHHHHHhhhcCCCcEEEEeChhh-hCHHHHHHHHHHHhcCc-------------eE
Confidence 0 0000 0011111112234568999999999 99999999999999753 45
Q ss_pred EEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcccCCCCCCC
Q 001355 849 FVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKRKRTDDGDS 928 (1093)
Q Consensus 849 ~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kRk~~~~~~~ 928 (1093)
||++|+.- +
T Consensus 137 lI~att~n---------------------------------------------------------~-------------- 145 (447)
T 3pvs_A 137 FIGATTEN---------------------------------------------------------P-------------- 145 (447)
T ss_dssp EEEEESSC---------------------------------------------------------G--------------
T ss_pred EEecCCCC---------------------------------------------------------c--------------
Confidence 67766520 0
Q ss_pred CccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHHHHHHHHHH
Q 001355 929 PINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKILREIQPKF 1008 (1093)
Q Consensus 929 ~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii~~~i~~~~ 1008 (1093)
...+.+.|+.|+. ++.|+|++.+++.+++...+....
T Consensus 146 ------------------------------------------~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~ 182 (447)
T 3pvs_A 146 ------------------------------------------SFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKT 182 (447)
T ss_dssp ------------------------------------------GGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTT
T ss_pred ------------------------------------------ccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHh
Confidence 0023467788876 778999999999999988776432
Q ss_pred HHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 001355 1009 QRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENV 1048 (1093)
Q Consensus 1009 ~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~v 1048 (1093)
..+ ....+.|++++++.|+.. |..+. |.+.+.++..
T Consensus 183 ~~~--~~~~~~i~~~al~~L~~~-~~Gd~-R~lln~Le~a 218 (447)
T 3pvs_A 183 RGY--GGQDIVLPDETRRAIAEL-VNGDA-RRALNTLEMM 218 (447)
T ss_dssp TSS--TTSSEECCHHHHHHHHHH-HCSCH-HHHHHHHHHH
T ss_pred hhh--ccccCcCCHHHHHHHHHH-CCCCH-HHHHHHHHHH
Confidence 221 124478999999999987 54333 3344444444
No 28
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.26 E-value=1.2e-10 Score=130.92 Aligned_cols=214 Identities=14% Similarity=0.078 Sum_probs=141.7
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..|+|+++++..|...+.........-.+ ..+....+||+||+|||||++|++||..+ ..+|+.++++....
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~---- 89 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVS---- 89 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHHHT----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHHhh----
Confidence 46899999999999888644321100000 01223469999999999999999999987 66899998875321
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccC-----------HHHHHHHhhhhcCCeEecCCCe
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAAD-----------PIVQSSLTKAISTGKFTDSYGR 840 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad-----------~~vq~~Ll~aLe~Gr~~d~~G~ 840 (1093)
.++|... ..+..+.+..+....+||||||||. +. ..+++.|+..++.-.
T Consensus 90 -------~~~g~~~-----~~~~~~f~~a~~~~~~vl~iDEid~-l~~~~~~~~~~~~~~~~~~ll~~l~~~~------- 149 (322)
T 3eie_A 90 -------KWMGESE-----KLVKQLFAMARENKPSIIFIDQVDA-LTGTRGEGESEASRRIKTELLVQMNGVG------- 149 (322)
T ss_dssp -------TTGGGHH-----HHHHHHHHHHHHTSSEEEEEECGGG-GSCC------CCTHHHHHHHHHHHGGGG-------
T ss_pred -------cccchHH-----HHHHHHHHHHHhcCCeEEEechhhh-hhccCCCCcchHHHHHHHHHHHHhcccc-------
Confidence 2222211 2234455555666668999999998 53 356778888876311
Q ss_pred EeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcc
Q 001355 841 DVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKR 920 (1093)
Q Consensus 841 ~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kR 920 (1093)
....+.+||+|||..
T Consensus 150 -~~~~~v~vi~atn~~---------------------------------------------------------------- 164 (322)
T 3eie_A 150 -NDSQGVLVLGATNIP---------------------------------------------------------------- 164 (322)
T ss_dssp -TSCCCEEEEEEESCG----------------------------------------------------------------
T ss_pred -ccCCceEEEEecCCh----------------------------------------------------------------
Confidence 012357788888841
Q ss_pred cCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHH
Q 001355 921 KRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKI 1000 (1093)
Q Consensus 921 k~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii 1000 (1093)
..+.+.|+.|++..+.|++.+.++..+++
T Consensus 165 ---------------------------------------------------~~ld~al~~Rf~~~i~~~~p~~~~r~~il 193 (322)
T 3eie_A 165 ---------------------------------------------------WQLDSAIRRRFERRIYIPLPDLAARTTMF 193 (322)
T ss_dssp ---------------------------------------------------GGSCHHHHHHCCEEEECCCCCHHHHHHHH
T ss_pred ---------------------------------------------------hhCCHHHHcccCeEEEeCCCCHHHHHHHH
Confidence 01234677799999999999999988888
Q ss_pred HHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 001355 1001 LREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENVVLRSFYEVRRK 1059 (1093)
Q Consensus 1001 ~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~vl~~~l~e~~~~ 1059 (1093)
...+. ...+.+++..++.|+....-- ..+.|+..+.+.....+.+....
T Consensus 194 ~~~~~---------~~~~~~~~~~l~~la~~t~g~-sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 194 EINVG---------DTPCVLTKEDYRTLGAMTEGY-SGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp HHHHT---------TCCCCCCHHHHHHHHHTTTTC-CHHHHHHHHHHHTTHHHHHHHHC
T ss_pred HHHhc---------cCCCCCCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHhhh
Confidence 76443 223467888999999874311 13457777777777777666554
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.24 E-value=4.2e-11 Score=133.25 Aligned_cols=134 Identities=13% Similarity=0.082 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccC
Q 001355 698 DEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDC 777 (1093)
Q Consensus 698 deai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~ 777 (1093)
+..+..++..+.+........ +.+..+||+||+|||||.+|++||+.+ ..+|+.++++....
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~-----~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~---------- 74 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNI-----KVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELES---------- 74 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTC-----CCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHhcCCC-----CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhh----------
Confidence 344455555554443322211 223468999999999999999999998 67899999876421
Q ss_pred CCccccccccccchhhhHHHHH---HHhCCceEEEEcccccccCH-------------HHHHHHhhhhcCCeEecCCC--
Q 001355 778 QNIDFCDCKLRGKVLVDYIYQE---FRSKPYSVVFLEDLDKAADP-------------IVQSSLTKAISTGKFTDSYG-- 839 (1093)
Q Consensus 778 ~~l~G~~~g~~g~~~~~~l~ea---l~~~p~~VI~LDEVDkiad~-------------~vq~~Ll~aLe~Gr~~d~~G-- 839 (1093)
.+.|...+. ..+.+..+ .+....+||||||||+ +.+ .+++.|++.|+...+....|
T Consensus 75 -~~~g~~~~~----i~~~f~~a~~~~~~~~~~vl~iDEiD~-~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~ 148 (293)
T 3t15_A 75 -GNAGEPAKL----IRQRYREAAEIIRKGNMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 148 (293)
T ss_dssp -C---HHHHH----HHHHHHHHHHHHTTSSCCCEEEECCC---------------CHHHHHHHHHHHHHCCC--------
T ss_pred -ccCchhHHH----HHHHHHHHHHHHhcCCCeEEEEechhh-hcCCCCCCccccchHHHHHHHHHHHhcccccccccccc
Confidence 223322221 11122222 2455678999999998 543 46799999999766543332
Q ss_pred eEeecCCcEEEEecCC
Q 001355 840 RDVSISGMIFVATSTI 855 (1093)
Q Consensus 840 ~~V~l~naI~IlTSN~ 855 (1093)
......+++||+|||.
T Consensus 149 ~~~~~~~v~vI~ttN~ 164 (293)
T 3t15_A 149 NKQENARVPIIVTGND 164 (293)
T ss_dssp ---CCCCCCEEEECSS
T ss_pred ccccCCCcEEEEecCC
Confidence 3445678999999994
No 30
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.24 E-value=2.1e-10 Score=132.42 Aligned_cols=128 Identities=17% Similarity=0.209 Sum_probs=86.7
Q ss_pred cccCccHHHHHHHHHHHHHH--------HhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 692 EKVGWQDEAICTISQAVSRW--------RIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~--------rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
+.|.|.++++..|.++|... +.|...++ -+||+||||||||.+|++||..+ +.+|+.++++
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~pr--------GvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s 216 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPK--------GVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGA 216 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCC--------CEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC--------ceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhH
Confidence 45788888888888887642 23444432 29999999999999999999988 6789999987
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccC----------HH---HHHHHhhhhc
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAAD----------PI---VQSSLTKAIS 830 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad----------~~---vq~~Ll~aLe 830 (1093)
... ..++|... ..+..++...+.+..+||||||||.|+. .. +.+.|+..|+
T Consensus 217 ~l~-----------sk~vGese-----~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 280 (405)
T 4b4t_J 217 ELV-----------QKYIGEGS-----RMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLD 280 (405)
T ss_dssp GGS-----------CSSTTHHH-----HHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHH
T ss_pred Hhh-----------ccccchHH-----HHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhh
Confidence 632 12333211 2345556666666669999999997431 22 3455666665
Q ss_pred CCeEecCCCeEeecCCcEEEEecCC
Q 001355 831 TGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 831 ~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.-. ...+++||+|||.
T Consensus 281 g~~---------~~~~V~vIaATNr 296 (405)
T 4b4t_J 281 GFE---------TSKNIKIIMATNR 296 (405)
T ss_dssp TTT---------CCCCEEEEEEESC
T ss_pred ccC---------CCCCeEEEeccCC
Confidence 211 1246789999995
No 31
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.23 E-value=2.7e-10 Score=130.10 Aligned_cols=210 Identities=13% Similarity=0.074 Sum_probs=137.4
Q ss_pred cccCccHHHHHHHHHHHHHHHhc---CCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcccc
Q 001355 692 EKVGWQDEAICTISQAVSRWRIG---NGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRV 768 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg---~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~ 768 (1093)
+.|+|+++++..|..++...... .... .+....+||+||+|||||++|++||..+ ..+|+.+++.....
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~----~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l~~- 122 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGN----RKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVS- 122 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSS----CCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHHHS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcC----CCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHHhh-
Confidence 56899999999998887643210 1111 1122359999999999999999999988 56889888775311
Q ss_pred CCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccC-----------HHHHHHHhhhhcCCeEecC
Q 001355 769 SQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAAD-----------PIVQSSLTKAISTGKFTDS 837 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad-----------~~vq~~Ll~aLe~Gr~~d~ 837 (1093)
.++|... .....+....+....+||||||||. +. ..+++.|+..|+.-.
T Consensus 123 ----------~~~g~~~-----~~~~~~f~~a~~~~~~vl~iDEid~-l~~~r~~~~~~~~~~~~~~ll~~l~~~~---- 182 (355)
T 2qp9_X 123 ----------KWMGESE-----KLVKQLFAMARENKPSIIFIDQVDA-LTGTRGEGESEASRRIKTELLVQMNGVG---- 182 (355)
T ss_dssp ----------CC---CH-----HHHHHHHHHHHHTSSEEEEEECGGG-GTC------CTHHHHHHHHHHHHHHHCC----
T ss_pred ----------hhcchHH-----HHHHHHHHHHHHcCCeEEEEechHh-hcccCCCCcchHHHHHHHHHHHHhhccc----
Confidence 2222211 2234445555556668999999999 54 346778888886321
Q ss_pred CCeEeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhh
Q 001355 838 YGRDVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESR 917 (1093)
Q Consensus 838 ~G~~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 917 (1093)
....+++||+|||.. .
T Consensus 183 ----~~~~~v~vI~atn~~---~--------------------------------------------------------- 198 (355)
T 2qp9_X 183 ----NDSQGVLVLGATNIP---W--------------------------------------------------------- 198 (355)
T ss_dssp -------CCEEEEEEESCG---G---------------------------------------------------------
T ss_pred ----ccCCCeEEEeecCCc---c---------------------------------------------------------
Confidence 112467888898841 0
Q ss_pred hcccCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHH
Q 001355 918 RKRKRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLA 997 (1093)
Q Consensus 918 ~kRk~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~ 997 (1093)
.+.+.++.|++..+.|++.+.+...
T Consensus 199 -------------------------------------------------------~ld~al~rRf~~~i~i~~P~~~~r~ 223 (355)
T 2qp9_X 199 -------------------------------------------------------QLDSAIRRRFERRIYIPLPDLAART 223 (355)
T ss_dssp -------------------------------------------------------GSCHHHHHTCCEEEECCCCCHHHHH
T ss_pred -------------------------------------------------------cCCHHHHcccCEEEEeCCcCHHHHH
Confidence 1124667799989999999999888
Q ss_pred HHHHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHh
Q 001355 998 EKILREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENVVLRSFYEVRR 1058 (1093)
Q Consensus 998 ~ii~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~vl~~~l~e~~~ 1058 (1093)
+++...+.. ..+.+++..++.|+....-- ..+.|+.++.+.+...+.+...
T Consensus 224 ~il~~~l~~---------~~~~~~~~~l~~la~~t~G~-sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 224 TMFEINVGD---------TPSVLTKEDYRTLGAMTEGY-SGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp HHHHHHHTT---------SCBCCCHHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh---------CCCCCCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 887654431 22456788899998774310 2346777777777777766543
No 32
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.22 E-value=7.7e-10 Score=124.68 Aligned_cols=214 Identities=13% Similarity=0.057 Sum_probs=137.5
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.|+|+++++..|.+.+.........-.+. .+....+||+||+|||||++|++||..+. ..+|+.++++...
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~----- 83 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLV----- 83 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHH-----
Confidence 468999999999988886532210000000 01223699999999999999999998872 4578888887532
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc-----------CHHHHHHHhhhhcCCeEecCCCe
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA-----------DPIVQSSLTKAISTGKFTDSYGR 840 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia-----------d~~vq~~Ll~aLe~Gr~~d~~G~ 840 (1093)
..+.|... .....+.+..+....+||||||||. + ...+++.|+..++.-.
T Consensus 84 ------~~~~g~~~-----~~~~~lf~~a~~~~~~vl~iDEid~-l~~~~~~~~~~~~~~~~~~ll~~ld~~~------- 144 (322)
T 1xwi_A 84 ------SKWLGESE-----KLVKNLFQLARENKPSIIFIDEIDS-LCGSRSENESEAARRIKTEFLVQMQGVG------- 144 (322)
T ss_dssp ------CSSCCSCH-----HHHHHHHHHHHHTSSEEEEEETTTG-GGCCSSSCCTTHHHHHHHHHHHHHHCSS-------
T ss_pred ------hhhhhHHH-----HHHHHHHHHHHhcCCcEEEeecHHH-hccccccccchHHHHHHHHHHHHHhccc-------
Confidence 12222211 2234555555666678999999998 5 2356677777776311
Q ss_pred EeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcc
Q 001355 841 DVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKR 920 (1093)
Q Consensus 841 ~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kR 920 (1093)
....+.+||+|||.. .
T Consensus 145 -~~~~~v~vI~atn~~---~------------------------------------------------------------ 160 (322)
T 1xwi_A 145 -VDNDGILVLGATNIP---W------------------------------------------------------------ 160 (322)
T ss_dssp -SCCTTEEEEEEESCT---T------------------------------------------------------------
T ss_pred -ccCCCEEEEEecCCc---c------------------------------------------------------------
Confidence 112467888888841 0
Q ss_pred cCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHH
Q 001355 921 KRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKI 1000 (1093)
Q Consensus 921 k~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii 1000 (1093)
.+.+.|+.|+|..+.|++.+.+...+++
T Consensus 161 ----------------------------------------------------~ld~al~rRf~~~i~i~~P~~~~r~~il 188 (322)
T 1xwi_A 161 ----------------------------------------------------VLDSAIRRRFEKRIYIPLPEPHARAAMF 188 (322)
T ss_dssp ----------------------------------------------------TSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred ----------------------------------------------------cCCHHHHhhcCeEEEeCCcCHHHHHHHH
Confidence 1124667799989999999998888777
Q ss_pred HHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHh
Q 001355 1001 LREIQPKFQRAFGFEVLLEIDYEILVQILAATWLSDRKKAIENWIENVVLRSFYEVRR 1058 (1093)
Q Consensus 1001 ~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~~~~~~~~r~ie~wve~vl~~~l~e~~~ 1058 (1093)
...+. ...+.+++..++.|+....-- ..+.|+..+.+.....+.++..
T Consensus 189 ~~~l~---------~~~~~l~~~~l~~la~~t~G~-sgadl~~l~~~A~~~a~r~~~~ 236 (322)
T 1xwi_A 189 KLHLG---------TTQNSLTEADFRELGRKTDGY-SGADISIIVRDALMQPVRKVQS 236 (322)
T ss_dssp HHHHT---------TCCBCCCHHHHHHHHHTCTTC-CHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHh---------cCCCCCCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHh
Confidence 65442 122456888999999874311 1345666777776666666543
No 33
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.22 E-value=2.3e-10 Score=132.04 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=87.3
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..|+|++.++..|...+.........-.+ .......+||+||+|||||++|++||..+ ..+|+.++|+....
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~---- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTG-LRAPARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTS---- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCG-GGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcc-cCCCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhc----
Confidence 46899999999999888654331110000 01123479999999999999999999986 56899999875321
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc-----------CHHHHHHHhhhhcCCeEecCCCe
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA-----------DPIVQSSLTKAISTGKFTDSYGR 840 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia-----------d~~vq~~Ll~aLe~Gr~~d~~G~ 840 (1093)
.+.|... .....+.+.......+||||||||. + ...+++.|+..++...-.
T Consensus 187 -------~~~g~~~-----~~~~~~~~~a~~~~~~il~iDEid~-l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----- 248 (389)
T 3vfd_A 187 -------KYVGEGE-----KLVRALFAVARELQPSIIFIDQVDS-LLCERREGEHDASRRLKTEFLIEFDGVQSA----- 248 (389)
T ss_dssp ------------CH-----HHHHHHHHHHHHSSSEEEEEETGGG-GC--------CTHHHHHHHHHHHHHHHC-------
T ss_pred -------cccchHH-----HHHHHHHHHHHhcCCeEEEEECchh-hcccCCCccchHHHHHHHHHHHHhhccccc-----
Confidence 1222211 1234445555556668999999998 6 456778888888732111
Q ss_pred EeecCCcEEEEecCC
Q 001355 841 DVSISGMIFVATSTI 855 (1093)
Q Consensus 841 ~V~l~naI~IlTSN~ 855 (1093)
.-.+++||+|||.
T Consensus 249 --~~~~v~vI~atn~ 261 (389)
T 3vfd_A 249 --GDDRVLVMGATNR 261 (389)
T ss_dssp -----CEEEEEEESC
T ss_pred --CCCCEEEEEecCC
Confidence 1136788999884
No 34
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.20 E-value=7.2e-11 Score=132.89 Aligned_cols=51 Identities=6% Similarity=0.076 Sum_probs=37.8
Q ss_pred CceEEEEcccccccCHHHHHHHhhhhcCCeE--ecCCCeEeecCCcEEEEecCC
Q 001355 804 PYSVVFLEDLDKAADPIVQSSLTKAISTGKF--TDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 804 p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~--~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.++|||||||++ ++...|+.|++++++|.. ...++....-.+.+||+|+|.
T Consensus 144 ~~~vl~iDEi~~-l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~ 196 (350)
T 1g8p_A 144 NRGYLYIDECNL-LEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNP 196 (350)
T ss_dssp TTEEEEETTGGG-SCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECS
T ss_pred CCCEEEEeChhh-CCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCC
Confidence 367999999999 999999999999999863 332222222236778888873
No 35
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.19 E-value=7.8e-10 Score=126.29 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHh--------cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHH
Q 001355 678 FDPRDYKTLRIALA--------EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 678 ~d~e~lk~L~~~L~--------e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.+..-.+.+.+.+. +.|+|+++++..|...+.........-.+ ..+....+||+||+|||||++|++||..
T Consensus 62 ~~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTG-LRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCG-GGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhh-ccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 44444555555552 56999999999999988753221110000 0112346999999999999999999998
Q ss_pred hccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc-----------C
Q 001355 750 VFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA-----------D 818 (1093)
Q Consensus 750 lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia-----------d 818 (1093)
+ ..+|+.++++.... .+.|.. ......+.........+||||||||. + .
T Consensus 141 ~---~~~~~~i~~~~l~~-----------~~~g~~-----~~~~~~~~~~a~~~~~~vl~iDEid~-l~~~~~~~~~~~~ 200 (357)
T 3d8b_A 141 S---GATFFSISASSLTS-----------KWVGEG-----EKMVRALFAVARCQQPAVIFIDEIDS-LLSQRGDGEHESS 200 (357)
T ss_dssp T---TCEEEEEEGGGGCC-----------SSTTHH-----HHHHHHHHHHHHHTCSEEEEEETHHH-HTBC------CHH
T ss_pred c---CCeEEEEehHHhhc-----------cccchH-----HHHHHHHHHHHHhcCCeEEEEeCchh-hhccCCCCcchHH
Confidence 7 56899999875321 122211 11233444555556678999999998 5 2
Q ss_pred HHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 819 PIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 819 ~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
..+++.|+..++..... .-.+.+||+|||.
T Consensus 201 ~~~~~~lL~~l~~~~~~-------~~~~v~vI~atn~ 230 (357)
T 3d8b_A 201 RRIKTEFLVQLDGATTS-------SEDRILVVGATNR 230 (357)
T ss_dssp HHHHHHHHHHHHC-----------CCCCEEEEEEESC
T ss_pred HHHHHHHHHHHhccccc-------CCCCEEEEEecCC
Confidence 35677888888743211 1136778888884
No 36
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.18 E-value=1.1e-09 Score=128.85 Aligned_cols=212 Identities=12% Similarity=0.072 Sum_probs=136.5
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.|+|+++++..|...+.........-.+. .+....+||+||+|||||++|++||..+. ..+|+.++++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l~----- 205 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLV----- 205 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGG-GCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC--------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHHH-----
Confidence 458999999999988875432100000000 01123699999999999999999999873 4578888877531
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc-----------CHHHHHHHhhhhcCCeEecCCCe
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA-----------DPIVQSSLTKAISTGKFTDSYGR 840 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia-----------d~~vq~~Ll~aLe~Gr~~d~~G~ 840 (1093)
..++|... ..+..+.+..+....+||||||||. + ...+++.|+..|+.-.
T Consensus 206 ------~~~~g~~~-----~~~~~~f~~a~~~~~~vl~iDEid~-l~~~~~~~~~~~~~~~~~~lL~~l~~~~------- 266 (444)
T 2zan_A 206 ------SKWLGESE-----KLVKNLFQLARENKPSIIFIDEIDS-LCGSRSENESEAARRIKTEFLVQMQGVG------- 266 (444)
T ss_dssp ------------CC-----CTHHHHHHHHHHSCSEEEEESCTTT-TCCCSSCCCCGGGHHHHHHHHTTTTCSS-------
T ss_pred ------hhhcchHH-----HHHHHHHHHHHHcCCeEEEEechHh-hccCCCCccccHHHHHHHHHHHHHhCcc-------
Confidence 12223222 1234455555666678999999998 5 2467788888776421
Q ss_pred EeecCCcEEEEecCCCCCCCccCCCCCCCcchHHHHHhhhhhhhhhcccccccccccCCCCcccccCCCCCCCchhhhcc
Q 001355 841 DVSISGMIFVATSTILKGKHSVHPQTTPVKFSEEIILGAKRWQMQTAISHGFADAARGSGMNVKVTPRKENSNPESRRKR 920 (1093)
Q Consensus 841 ~V~l~naI~IlTSN~~~~~~~~~~~~~~~~f~eekil~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~kR 920 (1093)
....+++||+|||..
T Consensus 267 -~~~~~v~vI~atn~~---------------------------------------------------------------- 281 (444)
T 2zan_A 267 -VDNDGILVLGATNIP---------------------------------------------------------------- 281 (444)
T ss_dssp -CCCSSCEEEEEESCG----------------------------------------------------------------
T ss_pred -cCCCCEEEEecCCCc----------------------------------------------------------------
Confidence 122468899999841
Q ss_pred cCCCCCCCCccchhhhhhhhccccCCCCcccccccccCCccCCchhhhhccccChHHHhhccccccccCCCChHHHHHHH
Q 001355 921 KRTDDGDSPINSQKQVDDSFRSYLDLNLPADEAEEDTSSEKFDSDTICENSGAWLEDFFDQTDAIAVFQPLNFDLLAEKI 1000 (1093)
Q Consensus 921 k~~~~~~~~~~~~k~~~~~~~~~lDLNl~~~e~e~~~~~~~~~~d~~~e~~~~~~~efl~rId~~VvF~pld~~~l~~ii 1000 (1093)
..+.+.|+.|++..+.|++.+.+...+++
T Consensus 282 ---------------------------------------------------~~ld~al~rRf~~~i~i~~P~~~~r~~il 310 (444)
T 2zan_A 282 ---------------------------------------------------WVLDSAIRRRFEKRIYIPLPEAHARAAMF 310 (444)
T ss_dssp ---------------------------------------------------GGSCHHHHTTCCEEEECCCCCHHHHHHHH
T ss_pred ---------------------------------------------------cccCHHHHhhcceEEEeCCcCHHHHHHHH
Confidence 01234677799989999999998887777
Q ss_pred HHHHHHHHHHhcCCCceeecCHHHHHHHHhc--CCchhhHHHHHHHHHHHHHHHHHHHHh
Q 001355 1001 LREIQPKFQRAFGFEVLLEIDYEILVQILAA--TWLSDRKKAIENWIENVVLRSFYEVRR 1058 (1093)
Q Consensus 1001 ~~~i~~~~~~~~~~~~~L~Id~~vle~Ll~~--~~~~~~~r~ie~wve~vl~~~l~e~~~ 1058 (1093)
...+. ...+.+++..++.|+.. +|. .+.|+..+.+.+...+.++..
T Consensus 311 ~~~l~---------~~~~~l~~~~l~~la~~t~G~s---gadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 311 RLHLG---------STQNSLTEADFQELGRKTDGYS---GADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp HHHHT---------TSCEECCHHHHHHHHHHTTTCC---HHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHh---------cCCCCCCHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHHHHh
Confidence 65442 12346788889999876 332 345777777777777766643
No 37
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.18 E-value=3.7e-10 Score=132.05 Aligned_cols=128 Identities=17% Similarity=0.169 Sum_probs=84.4
Q ss_pred cccCccHHHHHHHHHHHHHH--------HhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 692 EKVGWQDEAICTISQAVSRW--------RIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~--------rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..|.|.++++..|.+.|... +.|...++ -+||+||||||||++|++||..+ ..+|+.++++
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~ppr--------GILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s 277 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPK--------GILLYGPPGTGKTLCARAVANRT---DATFIRVIGS 277 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCS--------EEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCC--------ceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhH
Confidence 35788888888888776542 23444332 39999999999999999999988 6789999887
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccC----------HH---HHHHHhhhhc
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAAD----------PI---VQSSLTKAIS 830 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad----------~~---vq~~Ll~aLe 830 (1093)
... ..++|... ..+..++...+.+..+||||||+|.|+. .. +.+.|+..|+
T Consensus 278 ~L~-----------sk~vGese-----k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 341 (467)
T 4b4t_H 278 ELV-----------QKYVGEGA-----RMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLD 341 (467)
T ss_dssp GGC-----------CCSSSHHH-----HHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHH
T ss_pred Hhh-----------cccCCHHH-----HHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhh
Confidence 632 12333211 2234455555566669999999997431 22 3445555555
Q ss_pred CCeEecCCCeEeecCCcEEEEecCC
Q 001355 831 TGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 831 ~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.. -...+++||+|||.
T Consensus 342 g~---------~~~~~ViVIaATNr 357 (467)
T 4b4t_H 342 GF---------DPRGNIKVMFATNR 357 (467)
T ss_dssp SS---------CCTTTEEEEEECSC
T ss_pred cc---------CCCCcEEEEeCCCC
Confidence 21 12246789999995
No 38
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.17 E-value=3.6e-10 Score=123.95 Aligned_cols=130 Identities=21% Similarity=0.232 Sum_probs=86.4
Q ss_pred cccCccHHHHHHHHHHHHHHHh--------cCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 692 EKVGWQDEAICTISQAVSRWRI--------GNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rs--------g~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
+.++|+++++..|...+..... |... ...+||+||+|||||++|++||..+ ..+|+.+++.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~ 85 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEP--------PKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGS 85 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCC--------CSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCC--------CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehH
Confidence 4589999999988888765421 1111 2369999999999999999999987 5678888876
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc-----------CHHHHHHHhhhhcCC
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA-----------DPIVQSSLTKAISTG 832 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia-----------d~~vq~~Ll~aLe~G 832 (1093)
.... .+.|... .....+.........+||||||||. + +...+..|.++++..
T Consensus 86 ~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~~vl~iDEid~-l~~~~~~~~~~~~~~~~~~l~~ll~~~ 148 (285)
T 3h4m_A 86 ELVK-----------KFIGEGA-----SLVKDIFKLAKEKAPSIIFIDEIDA-IAAKRTDALTGGDREVQRTLMQLLAEM 148 (285)
T ss_dssp GGCC-----------CSTTHHH-----HHHHHHHHHHHHTCSEEEEEETTHH-HHBCCSSSCCGGGGHHHHHHHHHHHHH
T ss_pred HHHH-----------hccchHH-----HHHHHHHHHHHHcCCeEEEEECHHH-hcccCccccCCccHHHHHHHHHHHHHh
Confidence 5311 1112111 1233444445555568999999999 5 667788887777642
Q ss_pred eEecCCCeEeecCCcEEEEecCC
Q 001355 833 KFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 833 r~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.-... -.+.+||+|||.
T Consensus 149 ~~~~~------~~~~~vI~ttn~ 165 (285)
T 3h4m_A 149 DGFDA------RGDVKIIGATNR 165 (285)
T ss_dssp HTTCS------SSSEEEEEECSC
T ss_pred hCCCC------CCCEEEEEeCCC
Confidence 11111 136778998884
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.16 E-value=5.2e-10 Score=127.04 Aligned_cols=64 Identities=19% Similarity=0.089 Sum_probs=48.5
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
..++||+.++..+...+.....+... +..+||+||+|+|||.+|+++|+.+. ...+|+.+++..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~--------~~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~ 107 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIA--------GRAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAGSE 107 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCT--------TCEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEGGG
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCC--------CCEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccchh
Confidence 46899999988877666655543321 13699999999999999999999883 445788887654
No 40
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.16 E-value=2.8e-10 Score=127.38 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=82.1
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.++||++++..+...+...+ ....+||.||+|+|||.+|++|++.+ ...++.++++....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~------------~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~~---- 86 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK------------IPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCKI---- 86 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC------------CCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCCH----
T ss_pred HHHhCcHHHHHHHHHHHHcCC------------CCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccCH----
Confidence 468999999888887776211 11258999999999999999999988 56788888654210
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhC----CceEEEEcccccccC-HHHHHHHhhhhcCCeEecCCCeEeecCC
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAAD-PIVQSSLTKAISTGKFTDSYGRDVSISG 846 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad-~~vq~~Ll~aLe~Gr~~d~~G~~V~l~n 846 (1093)
. ...+.+.+..... .+.||||||+|. +. ...|+.|++++++.. .+
T Consensus 87 --------------~----~i~~~~~~~~~~~~~~~~~~vliiDEi~~-l~~~~~~~~L~~~le~~~-----------~~ 136 (324)
T 3u61_B 87 --------------D----FVRGPLTNFASAASFDGRQKVIVIDEFDR-SGLAESQRHLRSFMEAYS-----------SN 136 (324)
T ss_dssp --------------H----HHHTHHHHHHHBCCCSSCEEEEEEESCCC-GGGHHHHHHHHHHHHHHG-----------GG
T ss_pred --------------H----HHHHHHHHHHhhcccCCCCeEEEEECCcc-cCcHHHHHHHHHHHHhCC-----------CC
Confidence 0 0111222222222 467999999999 88 999999999998531 45
Q ss_pred cEEEEecCC
Q 001355 847 MIFVATSTI 855 (1093)
Q Consensus 847 aI~IlTSN~ 855 (1093)
.+||+|||.
T Consensus 137 ~~iI~~~n~ 145 (324)
T 3u61_B 137 CSIIITANN 145 (324)
T ss_dssp CEEEEEESS
T ss_pred cEEEEEeCC
Confidence 779999984
No 41
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.15 E-value=3.2e-10 Score=131.40 Aligned_cols=128 Identities=17% Similarity=0.167 Sum_probs=85.3
Q ss_pred cccCccHHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 692 EKVGWQDEAICTISQAVSRWR--------IGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~r--------sg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..|.|.++++..|.+.|.... .|...+ --+||+||||||||.+|++||..+ ..+|+.++++
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~p--------rGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s 250 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPP--------KGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGS 250 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCC--------SEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESG
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC--------CCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHH
Confidence 457888888888888876531 333333 239999999999999999999988 6789999877
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccC----------HHHH---HHHhhhhc
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAAD----------PIVQ---SSLTKAIS 830 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad----------~~vq---~~Ll~aLe 830 (1093)
... ..++|..+ ..+..++...+.+..+||||||||.|+. ..++ ..|+..|+
T Consensus 251 ~l~-----------sk~vGese-----k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 251 ELI-----------QKYLGDGP-----RLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 314 (437)
T ss_dssp GGC-----------CSSSSHHH-----HHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred Hhh-----------hccCchHH-----HHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence 532 12333211 2345555656666669999999997432 2333 44454454
Q ss_pred CCeEecCCCeEeecCCcEEEEecCC
Q 001355 831 TGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 831 ~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.- + ...+++||+|||.
T Consensus 315 g~---~------~~~~ViVIaATNr 330 (437)
T 4b4t_I 315 GF---D------DRGDVKVIMATNK 330 (437)
T ss_dssp HC---C------CSSSEEEEEEESC
T ss_pred Cc---C------CCCCEEEEEeCCC
Confidence 21 1 1246889999995
No 42
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.15 E-value=9.2e-10 Score=114.02 Aligned_cols=118 Identities=27% Similarity=0.380 Sum_probs=79.9
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC--CCceEEeecCCccccC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN--KGKLIHVDVSSEQRVS 769 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs--~~~fv~id~s~~~~~~ 769 (1093)
..++|+++++..+...+.... ...++|+||+|+|||++|+++++.+... ...++.++++....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~-------------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 81 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN-------------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG-- 81 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC-------------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC--
T ss_pred HHHcCcHHHHHHHHHHHhCCC-------------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC--
Confidence 458999999888887765320 0139999999999999999999987443 23466666543110
Q ss_pred CCCccccCCCccccccccccchhhhHHHHHHH-----hCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeec
Q 001355 770 QPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR-----SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSI 844 (1093)
Q Consensus 770 ~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~-----~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l 844 (1093)
. . .....+..... .....||||||++. ++...++.|+++++.. .
T Consensus 82 -------------~--~----~~~~~~~~~~~~~~~~~~~~~vliiDe~~~-l~~~~~~~l~~~l~~~-----------~ 130 (226)
T 2chg_A 82 -------------I--D----VVRHKIKEFARTAPIGGAPFKIIFLDEADA-LTADAQAALRRTMEMY-----------S 130 (226)
T ss_dssp -------------H--H----HHHHHHHHHHTSCCSTTCSCEEEEEETGGG-SCHHHHHHHHHHHHHT-----------T
T ss_pred -------------h--H----HHHHHHHHHhcccCCCccCceEEEEeChhh-cCHHHHHHHHHHHHhc-----------C
Confidence 0 0 01112222222 24567999999999 9999999999999863 1
Q ss_pred CCcEEEEecCC
Q 001355 845 SGMIFVATSTI 855 (1093)
Q Consensus 845 ~naI~IlTSN~ 855 (1093)
.+.+||+|||.
T Consensus 131 ~~~~~i~~~~~ 141 (226)
T 2chg_A 131 KSCRFILSCNY 141 (226)
T ss_dssp TTEEEEEEESC
T ss_pred CCCeEEEEeCC
Confidence 35678888873
No 43
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.14 E-value=6.8e-10 Score=129.85 Aligned_cols=128 Identities=14% Similarity=0.195 Sum_probs=86.5
Q ss_pred cccCccHHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 692 EKVGWQDEAICTISQAVSRWR--------IGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~r--------sg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..|.|.++++..|.+.|.... .|...+ --+||+||||||||++|++||..+ +.+|+.++++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~p--------rGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s 249 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPP--------KGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPAS 249 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCC--------CEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCC--------CeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehh
Confidence 457888998888888886521 244333 249999999999999999999988 6789999887
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc----------CHH---HHHHHhhhhc
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA----------DPI---VQSSLTKAIS 830 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia----------d~~---vq~~Ll~aLe 830 (1093)
... ..|+|... ..+..++...+.+..+||||||||.|+ +.. +.+.|+..|+
T Consensus 250 ~l~-----------sk~~Gese-----~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 313 (437)
T 4b4t_L 250 GIV-----------DKYIGESA-----RIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMD 313 (437)
T ss_dssp GTC-----------CSSSSHHH-----HHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHH
T ss_pred hhc-----------cccchHHH-----HHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhh
Confidence 532 12222211 223455555566667999999999743 122 3455666665
Q ss_pred CCeEecCCCeEeecCCcEEEEecCC
Q 001355 831 TGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 831 ~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.- + ...+++||+|||.
T Consensus 314 g~---~------~~~~vivI~ATNr 329 (437)
T 4b4t_L 314 GF---D------NLGQTKIIMATNR 329 (437)
T ss_dssp SS---S------CTTSSEEEEEESS
T ss_pred cc---c------CCCCeEEEEecCC
Confidence 21 1 2246889999995
No 44
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.14 E-value=5e-10 Score=130.81 Aligned_cols=128 Identities=20% Similarity=0.177 Sum_probs=84.8
Q ss_pred cccCccHHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 692 EKVGWQDEAICTISQAVSRWR--------IGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~r--------sg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
+.|.|.++++..|.+.|.... .|...+ --+||+||||||||.+|++||..+ +.+|+.++++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~p--------rGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s 249 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP--------KGALMYGPPGTGKTLLARACAAQT---NATFLKLAAP 249 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCC--------CEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC--------CeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehh
Confidence 568899998888888765432 233333 249999999999999999999988 6789999887
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc----------CHHH---HHHHhhhhc
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA----------DPIV---QSSLTKAIS 830 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia----------d~~v---q~~Ll~aLe 830 (1093)
... ..++|... ..+..++...+.+..+||||||+|.|+ +..+ .+.|+..|+
T Consensus 250 ~l~-----------~~~vGese-----~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 250 QLV-----------QMYIGEGA-----KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp GGC-----------SSCSSHHH-----HHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred hhh-----------hcccchHH-----HHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 532 12333211 233455555555556999999999733 1233 345666665
Q ss_pred CCeEecCCCeEeecCCcEEEEecCC
Q 001355 831 TGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 831 ~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.-. .-.+++||+|||.
T Consensus 314 g~~---------~~~~ViVIaaTNr 329 (434)
T 4b4t_M 314 GFS---------SDDRVKVLAATNR 329 (434)
T ss_dssp TSC---------SSCSSEEEEECSS
T ss_pred ccC---------CCCCEEEEEeCCC
Confidence 210 1246789999995
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.14 E-value=6.7e-10 Score=123.78 Aligned_cols=127 Identities=17% Similarity=0.192 Sum_probs=85.2
Q ss_pred cccCccHHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 692 EKVGWQDEAICTISQAVSRWR--------IGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~r--------sg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
+.|+|+++++..|.+.+.... .+... +..++|+||+|||||++|++||..+ ..+|+.+++.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~--------~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTP--------SKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC--------CSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCC--------CceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhH
Confidence 358999999999988886531 22221 2369999999999999999999987 5688988876
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCH--------------HHHHHHhhhh
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADP--------------IVQSSLTKAI 829 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~--------------~vq~~Ll~aL 829 (1093)
.... .++|... .....+.........+||||||||. +.. .+++.|+..|
T Consensus 84 ~l~~-----------~~~g~~~-----~~~~~~f~~a~~~~p~il~iDEid~-l~~~~~~~~~~~~~~~~~~~~~lL~~l 146 (301)
T 3cf0_A 84 ELLT-----------MWFGESE-----ANVREIFDKARQAAPCVLFFDELDS-IAKARGGNIGDGGGAADRVINQILTEM 146 (301)
T ss_dssp HHHH-----------HHHTTCT-----THHHHHHHHHHHTCSEEEEECSTTH-HHHHHTTTTCCSSCSCCHHHHHHHHHH
T ss_pred HHHh-----------hhcCchH-----HHHHHHHHHHHhcCCeEEEEEChHH-HhhccCCCcCCcchHHHHHHHHHHHHh
Confidence 5311 2222211 1123334444445568999999998 543 3567888888
Q ss_pred cCCeEecCCCeEeecCCcEEEEecCC
Q 001355 830 STGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 830 e~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
+.-. ...+++||+|||.
T Consensus 147 ~~~~---------~~~~v~vi~atn~ 163 (301)
T 3cf0_A 147 DGMS---------TKKNVFIIGATNR 163 (301)
T ss_dssp HSSC---------TTSSEEEEEEESC
T ss_pred hccc---------CCCCEEEEEecCC
Confidence 7311 1246789999984
No 46
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.13 E-value=5.9e-11 Score=144.84 Aligned_cols=54 Identities=24% Similarity=0.258 Sum_probs=41.6
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEe
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHV 760 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~i 760 (1093)
..++||+.++..|..++... -.++|+||+|+|||++|++||..+.......+.+
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g---------------~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~ 94 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK---------------RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILV 94 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT---------------CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEE
T ss_pred ceEECchhhHhhccccccCC---------------CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEE
Confidence 56899999998877776522 1599999999999999999999886544333334
No 47
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.13 E-value=2.8e-11 Score=120.24 Aligned_cols=111 Identities=11% Similarity=0.034 Sum_probs=83.3
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCC
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPN 772 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~ 772 (1093)
.++|+++++..+...+..... .+.+++|+||+|||||.+|++||.... +|+.++|+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~----~~~~~~~~~~~~----- 64 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----------RTSPVFLTGEAGSPFETVARYFHKNGT----PWVSPARVEYLI----- 64 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----------CSSCEEEEEETTCCHHHHHGGGCCTTS----CEECCSSTTHHH-----
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCC----CeEEechhhCCh-----
Confidence 478999999998888876632 123699999999999999999998652 888888885321
Q ss_pred ccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEe
Q 001355 773 SIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVAT 852 (1093)
Q Consensus 773 si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlT 852 (1093)
. ...+.+.....++|||||||. +++..|..|+++++++. -.+.++|+|
T Consensus 65 -------------~--------~~~~~~~~a~~~~l~lDei~~-l~~~~q~~Ll~~l~~~~----------~~~~~iI~~ 112 (143)
T 3co5_A 65 -------------D--------MPMELLQKAEGGVLYVGDIAQ-YSRNIQTGITFIIGKAE----------RCRVRVIAS 112 (143)
T ss_dssp -------------H--------CHHHHHHHTTTSEEEEEECTT-CCHHHHHHHHHHHHHHT----------TTTCEEEEE
T ss_pred -------------H--------hhhhHHHhCCCCeEEEeChHH-CCHHHHHHHHHHHHhCC----------CCCEEEEEe
Confidence 0 022333344568999999999 99999999999999753 235779999
Q ss_pred cCC
Q 001355 853 STI 855 (1093)
Q Consensus 853 SN~ 855 (1093)
||.
T Consensus 113 tn~ 115 (143)
T 3co5_A 113 CSY 115 (143)
T ss_dssp EEE
T ss_pred cCC
Confidence 985
No 48
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.12 E-value=7.8e-10 Score=129.07 Aligned_cols=128 Identities=20% Similarity=0.182 Sum_probs=86.7
Q ss_pred cccCccHHHHHHHHHHHHHHH--------hcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 692 EKVGWQDEAICTISQAVSRWR--------IGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~r--------sg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
+.|.|.++++..|.+.|.... .|...++ -+||+||||||||.+|++||..+ +.+|+.++++
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~pr--------GiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~ 240 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPR--------GVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGS 240 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC--------EEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCc--------eEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecc
Confidence 468899999888888876432 2443332 39999999999999999999988 6789999887
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccC-------------HHHHHHHhhhhc
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAAD-------------PIVQSSLTKAIS 830 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad-------------~~vq~~Ll~aLe 830 (1093)
... ..++|... ..+..++...+.+..+||||||+|.++. ..+.+.|+..|+
T Consensus 241 ~l~-----------~~~~Ge~e-----~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ld 304 (428)
T 4b4t_K 241 EFV-----------HKYLGEGP-----RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMD 304 (428)
T ss_dssp GTC-----------CSSCSHHH-----HHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHH
T ss_pred hhh-----------ccccchhH-----HHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhh
Confidence 532 12333211 2344555555666669999999996331 134556666665
Q ss_pred CCeEecCCCeEeecCCcEEEEecCC
Q 001355 831 TGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 831 ~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.- ....+++||+|||.
T Consensus 305 g~---------~~~~~v~vI~aTN~ 320 (428)
T 4b4t_K 305 GF---------DQSTNVKVIMATNR 320 (428)
T ss_dssp HS---------CSSCSEEEEEEESC
T ss_pred CC---------CCCCCEEEEEecCC
Confidence 21 11246789999995
No 49
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.12 E-value=1.6e-09 Score=119.54 Aligned_cols=138 Identities=16% Similarity=0.158 Sum_probs=85.8
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..++|+++++..|...+.........-.+ ....+..++|+||+|||||++|++||..+ ..+|+.++++....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~---- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTG-LRAPAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTS---- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCG-GGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSS----
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhc-CCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhh----
Confidence 45899999999998887654321000000 01122469999999999999999999987 56788888875321
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc----------CHHHHHHHhhhhcCCeEecCCCeE
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA----------DPIVQSSLTKAISTGKFTDSYGRD 841 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia----------d~~vq~~Ll~aLe~Gr~~d~~G~~ 841 (1093)
.+.|. +......+.........+||||||+|.+. ....++.|+..++.-....
T Consensus 93 -------~~~~~-----~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~----- 155 (297)
T 3b9p_A 93 -------KYVGD-----GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP----- 155 (297)
T ss_dssp -------SSCSC-----HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------
T ss_pred -------cccch-----HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccC-----
Confidence 11121 11223344444555666899999999832 2466777888777432111
Q ss_pred eecCCcEEEEecCC
Q 001355 842 VSISGMIFVATSTI 855 (1093)
Q Consensus 842 V~l~naI~IlTSN~ 855 (1093)
.-.+.+||+|||.
T Consensus 156 -~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 156 -DGDRIVVLAATNR 168 (297)
T ss_dssp ----CEEEEEEESC
T ss_pred -CCCcEEEEeecCC
Confidence 1134678888884
No 50
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.10 E-value=8.7e-10 Score=121.95 Aligned_cols=118 Identities=25% Similarity=0.375 Sum_probs=80.4
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCC--CceEEeecCCccccC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNK--GKLIHVDVSSEQRVS 769 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~--~~fv~id~s~~~~~~ 769 (1093)
..++||++++..+...+.. . +. .+++|+||+|+|||.+|+++++.+++.. ..++.++++......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~-------~-----~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVER-------K-----NI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTT-------T-----CC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT
T ss_pred HHHhCCHHHHHHHHHHHhC-------C-----CC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH
Confidence 3589999888776655432 1 01 1499999999999999999999886543 346777776421100
Q ss_pred CCCccccCCCccccccccccchhhhHHHHHH-----HhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeec
Q 001355 770 QPNSIFDCQNIDFCDCKLRGKVLVDYIYQEF-----RSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSI 844 (1093)
Q Consensus 770 ~~~si~~~~~l~G~~~g~~g~~~~~~l~eal-----~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l 844 (1093)
. ..+.+.... ....+.||+|||+|. ++...++.|++++++. -
T Consensus 84 ----------------~-----~~~~~~~~~~~~~~~~~~~~vliiDe~~~-l~~~~~~~L~~~le~~-----------~ 130 (319)
T 2chq_A 84 ----------------V-----VRHKIKEFARTAPIGGAPFKIIFLDEADA-LTADAQAALRRTMEMY-----------S 130 (319)
T ss_dssp ----------------T-----SSHHHHHHHHSCCSSSCCCEEEEEETGGG-SCHHHHHTTGGGTSSS-----------S
T ss_pred ----------------H-----HHHHHHHHHhcCCCCCCCceEEEEeCCCc-CCHHHHHHHHHHHHhc-----------C
Confidence 0 001111211 124467999999999 9999999999999862 1
Q ss_pred CCcEEEEecCC
Q 001355 845 SGMIFVATSTI 855 (1093)
Q Consensus 845 ~naI~IlTSN~ 855 (1093)
.+++||++||.
T Consensus 131 ~~~~~i~~~~~ 141 (319)
T 2chq_A 131 KSCRFILSCNY 141 (319)
T ss_dssp SSEEEEEEESC
T ss_pred CCCeEEEEeCC
Confidence 36778898873
No 51
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.10 E-value=1.6e-09 Score=116.84 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=64.5
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.|+|+++++..|...+........... ...+....++|+||+|+|||++|++||+.+ ..+|+.++++....
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~---- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQ-LGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVE---- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC-------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSS----
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHH-cCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHh----
Confidence 5689999999888877765332111000 001122469999999999999999999987 56789998876321
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA 817 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia 817 (1093)
.+.|. +......+..........||||||||. +
T Consensus 78 -------~~~~~-----~~~~~~~~~~~a~~~~~~vl~iDeid~-l 110 (262)
T 2qz4_A 78 -------VIGGL-----GAARVRSLFKEARARAPCIVYIDEIDA-V 110 (262)
T ss_dssp -------SSTTH-----HHHHHHHHHHHHHHTCSEEEEEECC----
T ss_pred -------hccCh-----hHHHHHHHHHHHHhcCCeEEEEeCcch-h
Confidence 11111 111223344444455568999999999 6
No 52
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=1.5e-09 Score=120.55 Aligned_cols=118 Identities=22% Similarity=0.355 Sum_probs=81.0
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCC--CceEEeecCCccccC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNK--GKLIHVDVSSEQRVS 769 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~--~~fv~id~s~~~~~~ 769 (1093)
..++||++++..+...+...+ . ..++|+||+|+|||++|+++++.+.+.. ..++.++++....
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------------~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~-- 89 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------------M-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG-- 89 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------------C-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH--
T ss_pred HHhhCCHHHHHHHHHHHHcCC------------C-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc--
Confidence 458999999988887765421 0 1499999999999999999999886532 2356666553110
Q ss_pred CCCccccCCCccccccccccchhhhHHHHHHH-----hCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeec
Q 001355 770 QPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR-----SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSI 844 (1093)
Q Consensus 770 ~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~-----~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l 844 (1093)
. . ...+.+.+... ...+.||+|||+|. ++...++.|++++++..
T Consensus 90 -------------~--~----~~~~~~~~~~~~~~~~~~~~~vliiDe~~~-l~~~~~~~L~~~le~~~----------- 138 (327)
T 1iqp_A 90 -------------I--N----VIREKVKEFARTKPIGGASFKIIFLDEADA-LTQDAQQALRRTMEMFS----------- 138 (327)
T ss_dssp -------------H--H----TTHHHHHHHHHSCCGGGCSCEEEEEETGGG-SCHHHHHHHHHHHHHTT-----------
T ss_pred -------------h--H----HHHHHHHHHHhhCCcCCCCCeEEEEeCCCc-CCHHHHHHHHHHHHhcC-----------
Confidence 0 0 00011222221 13467999999999 99999999999998631
Q ss_pred CCcEEEEecCC
Q 001355 845 SGMIFVATSTI 855 (1093)
Q Consensus 845 ~naI~IlTSN~ 855 (1093)
.+++||+++|.
T Consensus 139 ~~~~~i~~~~~ 149 (327)
T 1iqp_A 139 SNVRFILSCNY 149 (327)
T ss_dssp TTEEEEEEESC
T ss_pred CCCeEEEEeCC
Confidence 35678888874
No 53
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.06 E-value=8.7e-10 Score=125.49 Aligned_cols=140 Identities=12% Similarity=0.114 Sum_probs=87.3
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC--------CCceEEeec
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN--------KGKLIHVDV 762 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs--------~~~fv~id~ 762 (1093)
.+.++|+++.+..+...+..+..+.. ...++|+||+|+|||.+|+++++.+... ...++.++|
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~---------~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEV---------KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCC---------CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCC---------CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 37899999999999998887755321 1269999999999999999999987443 567888988
Q ss_pred CCcc-ccCC-CCccccCCCccccccccccc---hhhhHHHHHHHhCCceEEEEcccccccCHH-HHHH-HhhhhcCCeEe
Q 001355 763 SSEQ-RVSQ-PNSIFDCQNIDFCDCKLRGK---VLVDYIYQEFRSKPYSVVFLEDLDKAADPI-VQSS-LTKAISTGKFT 835 (1093)
Q Consensus 763 s~~~-~~~~-~~si~~~~~l~G~~~g~~g~---~~~~~l~eal~~~p~~VI~LDEVDkiad~~-vq~~-Ll~aLe~Gr~~ 835 (1093)
.... .... ...+. ..+.|...++.|. ...+.+.+.+...+. ||||||+|. +... .+.. |..+++..
T Consensus 90 ~~~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~-l~~~~~~~~~l~~l~~~~--- 162 (384)
T 2qby_B 90 REVGGTPQAVLSSLA--GKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDT-LVKRRGGDIVLYQLLRSD--- 162 (384)
T ss_dssp HHHCSCHHHHHHHHH--HHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHH-HHHSTTSHHHHHHHHTSS---
T ss_pred ccCCCCHHHHHHHHH--HHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHH-hccCCCCceeHHHHhcCC---
Confidence 6532 1000 00000 0111222222222 234555566655444 999999999 7543 2444 44444321
Q ss_pred cCCCeEeecCCcEEEEecCC
Q 001355 836 DSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 836 d~~G~~V~l~naI~IlTSN~ 855 (1093)
.+.+||+|||.
T Consensus 163 ---------~~~~iI~~t~~ 173 (384)
T 2qby_B 163 ---------ANISVIMISND 173 (384)
T ss_dssp ---------SCEEEEEECSS
T ss_pred ---------cceEEEEEECC
Confidence 46778998884
No 54
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=1.1e-09 Score=123.21 Aligned_cols=132 Identities=19% Similarity=0.290 Sum_probs=77.9
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhcc---CCCceEEeecCCcccc
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFG---NKGKLIHVDVSSEQRV 768 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfg---s~~~fv~id~s~~~~~ 768 (1093)
..++||++++..+...+...+ . ..++|+||+|+|||.+|++||+.+.+ ....++.++++.....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------------~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 103 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------------L-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI 103 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------------C-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------------C-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch
Confidence 458999988877766653210 0 13899999999999999999998753 2335666666532100
Q ss_pred CCCCccccCCCcc-ccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCc
Q 001355 769 SQPNSIFDCQNID-FCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGM 847 (1093)
Q Consensus 769 ~~~~si~~~~~l~-G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~na 847 (1093)
. .+ ...+ ........ ..............+.||||||++. +++..++.|+++|++.. .+.
T Consensus 104 ~---~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vliiDE~~~-l~~~~~~~Ll~~le~~~-----------~~~ 164 (353)
T 1sxj_D 104 S---IV---REKVKNFARLTVS-KPSKHDLENYPCPPYKIIILDEADS-MTADAQSALRRTMETYS-----------GVT 164 (353)
T ss_dssp H---HH---TTHHHHHHHSCCC-CCCTTHHHHSCCCSCEEEEETTGGG-SCHHHHHHHHHHHHHTT-----------TTE
T ss_pred H---HH---HHHHHHHhhhccc-ccchhhcccCCCCCceEEEEECCCc-cCHHHHHHHHHHHHhcC-----------CCc
Confidence 0 00 0000 00000000 0000000011113456999999999 99999999999999642 356
Q ss_pred EEEEecCC
Q 001355 848 IFVATSTI 855 (1093)
Q Consensus 848 I~IlTSN~ 855 (1093)
+||+++|.
T Consensus 165 ~~il~~~~ 172 (353)
T 1sxj_D 165 RFCLICNY 172 (353)
T ss_dssp EEEEEESC
T ss_pred eEEEEeCc
Confidence 67888773
No 55
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.02 E-value=1.7e-09 Score=121.75 Aligned_cols=143 Identities=10% Similarity=0.036 Sum_probs=84.0
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCC-------CceEEeecC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNK-------GKLIHVDVS 763 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~-------~~fv~id~s 763 (1093)
.+.++|+++-+..|...|..+..+.. +..++|+||||||||.+++.+++.+.... -.++++||.
T Consensus 19 ~~~L~~Re~E~~~i~~~L~~~i~~~~---------~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~ 89 (318)
T 3te6_A 19 RELLKSQVEDFTRIFLPIYDSLMSSQ---------NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL 89 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC---------CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCC---------CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc
Confidence 34589999999999999998865332 13699999999999999999999885321 247888987
Q ss_pred CccccCCC-CccccCCCcccccccc-ccchhhhHHHHHH--HhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCC
Q 001355 764 SEQRVSQP-NSIFDCQNIDFCDCKL-RGKVLVDYIYQEF--RSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYG 839 (1093)
Q Consensus 764 ~~~~~~~~-~si~~~~~l~G~~~g~-~g~~~~~~l~eal--~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G 839 (1093)
...+.... ..+. ..+.|..... .....+..+...+ ......||+|||||. +. -|+.|..+++-..
T Consensus 90 ~~~t~~~~~~~I~--~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~-l~--~q~~L~~l~~~~~------ 158 (318)
T 3te6_A 90 ELAGMDALYEKIW--FAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPEN-LL--SEKILQYFEKWIS------ 158 (318)
T ss_dssp CCC--HHHHHHHH--HHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSS-SC--CTHHHHHHHHHHH------
T ss_pred ccCCHHHHHHHHH--HHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHH-hh--cchHHHHHHhccc------
Confidence 63221000 0000 0111211100 0111223333332 234456999999999 54 4555665554110
Q ss_pred eEeecCCcEEEEecCC
Q 001355 840 RDVSISGMIFVATSTI 855 (1093)
Q Consensus 840 ~~V~l~naI~IlTSN~ 855 (1093)
...++.+||+++|.
T Consensus 159 --~~~s~~~vI~i~n~ 172 (318)
T 3te6_A 159 --SKNSKLSIICVGGH 172 (318)
T ss_dssp --CSSCCEEEEEECCS
T ss_pred --ccCCcEEEEEEecC
Confidence 11235678888884
No 56
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.02 E-value=3.1e-09 Score=120.84 Aligned_cols=146 Identities=12% Similarity=0.162 Sum_probs=91.8
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC-CCceEEeecCCccccCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN-KGKLIHVDVSSEQRVSQ 770 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs-~~~fv~id~s~~~~~~~ 770 (1093)
+.++|+++.+..|...+.....+.. + ..-.++|+||+|+|||.+++++++.+... ...++.++|........
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~-~------~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~ 89 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPG-H------HYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTA 89 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTT-S------SCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCC-C------CCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHH
Confidence 4689999999999998887755321 0 00159999999999999999999988665 46788899865321000
Q ss_pred -CCccccCCCcccccccccc---chhhhHHHHHHHhC-CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecC
Q 001355 771 -PNSIFDCQNIDFCDCKLRG---KVLVDYIYQEFRSK-PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSIS 845 (1093)
Q Consensus 771 -~~si~~~~~l~G~~~g~~g---~~~~~~l~eal~~~-p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~ 845 (1093)
...+. ..+|......+ ....+.+...+... ...||||||++. ++...+..|+++++...-. ...
T Consensus 90 ~~~~l~---~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~-l~~~~~~~L~~~~~~~~~~-------~~~ 158 (389)
T 1fnn_A 90 IIGEIA---RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFN-LAPDILSTFIRLGQEADKL-------GAF 158 (389)
T ss_dssp HHHHHH---HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGG-SCHHHHHHHHHHTTCHHHH-------SSC
T ss_pred HHHHHH---HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccc-cchHHHHHHHHHHHhCCCC-------CcC
Confidence 00000 00111111111 12234444444433 356999999999 8999999999999742100 002
Q ss_pred CcEEEEecCC
Q 001355 846 GMIFVATSTI 855 (1093)
Q Consensus 846 naI~IlTSN~ 855 (1093)
+..||++||.
T Consensus 159 ~~~iI~~~~~ 168 (389)
T 1fnn_A 159 RIALVIVGHN 168 (389)
T ss_dssp CEEEEEEESS
T ss_pred CEEEEEEECC
Confidence 5668888873
No 57
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.01 E-value=1.2e-09 Score=119.34 Aligned_cols=136 Identities=11% Similarity=0.116 Sum_probs=81.5
Q ss_pred HhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccC
Q 001355 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVS 769 (1093)
Q Consensus 690 L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~ 769 (1093)
+...++|+++++..+..........+.... .+....+||+||+|||||++|++||+.+ ..+|+.++++.
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~----- 99 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPD----- 99 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGG-----
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHH-----
Confidence 445688998887777764211111111000 0123579999999999999999999986 56788888763
Q ss_pred CCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc----------CHHHHHHHhhhhcCCeEecCCC
Q 001355 770 QPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA----------DPIVQSSLTKAISTGKFTDSYG 839 (1093)
Q Consensus 770 ~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia----------d~~vq~~Ll~aLe~Gr~~d~~G 839 (1093)
.++|...+ ........+.+.....+..||||||||. + ...+++.|...++.-. .
T Consensus 100 ---------~~~g~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~-l~~~~~~~~~~~~~~l~~L~~~~~~~~--~--- 163 (272)
T 1d2n_A 100 ---------KMIGFSET-AKCQAMKKIFDDAYKSQLSCVVVDDIER-LLDYVPIGPRFSNLVLQALLVLLKKAP--P--- 163 (272)
T ss_dssp ---------GCTTCCHH-HHHHHHHHHHHHHHTSSEEEEEECCHHH-HTTCBTTTTBCCHHHHHHHHHHTTCCC--S---
T ss_pred ---------HhcCCchH-HHHHHHHHHHHHHHhcCCcEEEEEChhh-hhccCCCChhHHHHHHHHHHHHhcCcc--C---
Confidence 12222111 0001122333333446678999999999 6 5566677777665311 0
Q ss_pred eEeecCCcEEEEecCC
Q 001355 840 RDVSISGMIFVATSTI 855 (1093)
Q Consensus 840 ~~V~l~naI~IlTSN~ 855 (1093)
.-.+.+||+|||.
T Consensus 164 ---~~~~~~ii~ttn~ 176 (272)
T 1d2n_A 164 ---QGRKLLIIGTTSR 176 (272)
T ss_dssp ---TTCEEEEEEEESC
T ss_pred ---CCCCEEEEEecCC
Confidence 1134668888884
No 58
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.01 E-value=4.4e-09 Score=118.91 Aligned_cols=133 Identities=13% Similarity=0.104 Sum_probs=82.1
Q ss_pred cCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc------cc
Q 001355 694 VGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE------QR 767 (1093)
Q Consensus 694 ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~------~~ 767 (1093)
.+||++++..+..++...+. .-.+||+||+|+|||.+|+++|+.+++....- ...|+.. ..
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~------------~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c~~~~~ 70 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRG------------HHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKSCGHCRGCQLMQA 70 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCC------------CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBCCSCSHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCc------------ceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHhc
Confidence 58999999888877753321 12599999999999999999999987643210 0011110 00
Q ss_pred cCCCCccccCCCccccc-cccccchhhhHHHHHHHhCC----ceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 768 VSQPNSIFDCQNIDFCD-CKLRGKVLVDYIYQEFRSKP----YSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 768 ~~~~~si~~~~~l~G~~-~g~~g~~~~~~l~eal~~~p----~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
....+ + ..+.+.. ....+.+.+..+.+.+...| +.||+|||+|+ ++...++.|++.||+.
T Consensus 71 ~~~~d-~---~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~-l~~~a~naLLk~lEep---------- 135 (334)
T 1a5t_A 71 GTHPD-Y---YTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAAL-LTDAAANALLKTLEEP---------- 135 (334)
T ss_dssp TCCTT-E---EEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGG-BCHHHHHHHHHHHTSC----------
T ss_pred CCCCC-E---EEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhh-cCHHHHHHHHHHhcCC----------
Confidence 00000 0 0000000 01122233344555554443 67999999999 9999999999999963
Q ss_pred ecCCcEEEEecCC
Q 001355 843 SISGMIFVATSTI 855 (1093)
Q Consensus 843 ~l~naI~IlTSN~ 855 (1093)
-.+++||++||.
T Consensus 136 -~~~~~~Il~t~~ 147 (334)
T 1a5t_A 136 -PAETWFFLATRE 147 (334)
T ss_dssp -CTTEEEEEEESC
T ss_pred -CCCeEEEEEeCC
Confidence 146789998873
No 59
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.00 E-value=1.5e-08 Score=114.81 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=81.7
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccc---c
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQR---V 768 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~---~ 768 (1093)
..++||++++..+...+...+. ...++|+||+|+|||.+|+++++.+..... .....|..... .
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~------------~~~~ll~G~~G~GKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI------------HHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREI 82 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC------------CSEEEEESCTTSSHHHHHHHHHHHHSCTTC-SCSSCCSSSHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCCC------------CeEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCCCCcccHHHHHH
Confidence 3589999999988888754211 125899999999999999999998854321 11112221100 0
Q ss_pred CCCCccccCCCcccccc-ccccchhhhHHHHHHHhC----CceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEee
Q 001355 769 SQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQEFRSK----PYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVS 843 (1093)
Q Consensus 769 ~~~~si~~~~~l~G~~~-g~~g~~~~~~l~eal~~~----p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~ 843 (1093)
..... ..++.... +..+......+.+.+... .+.||+|||+|. ++...++.|++.+++.
T Consensus 83 ~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~-l~~~~~~~Ll~~le~~----------- 146 (373)
T 1jr3_A 83 EQGRF----VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM-LSRHSFNALLKTLEEP----------- 146 (373)
T ss_dssp HTSCC----SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGG-SCHHHHHHHHHHHHSC-----------
T ss_pred hccCC----CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcch-hcHHHHHHHHHHHhcC-----------
Confidence 00000 01111100 011122234444554433 357999999999 9999999999999852
Q ss_pred cCCcEEEEecC
Q 001355 844 ISGMIFVATST 854 (1093)
Q Consensus 844 l~naI~IlTSN 854 (1093)
-.+++||++|+
T Consensus 147 ~~~~~~Il~~~ 157 (373)
T 1jr3_A 147 PEHVKFLLATT 157 (373)
T ss_dssp CSSEEEEEEES
T ss_pred CCceEEEEEeC
Confidence 13677888877
No 60
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.00 E-value=4.7e-09 Score=116.23 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=79.7
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCC--CceEEeecCCccccC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNK--GKLIHVDVSSEQRVS 769 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~--~~fv~id~s~~~~~~ 769 (1093)
..++||++++..+...+...+ .. .++|+||+|+|||.+|+++++.+.+.. ..++.++++...
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------------~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--- 84 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------------MP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR--- 84 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------------CC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC---
T ss_pred HHHHCCHHHHHHHHHHHHcCC------------CC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc---
Confidence 458999999888877764210 11 389999999999999999999875432 235666654310
Q ss_pred CCCccccCCCccccccccccchhhhHHHHHHH-------hCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEe
Q 001355 770 QPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR-------SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDV 842 (1093)
Q Consensus 770 ~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~-------~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V 842 (1093)
+...+..+.+.+. ...+.||+|||+|. ++...++.|++++++..
T Consensus 85 -------------------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~-l~~~~~~~L~~~le~~~--------- 135 (323)
T 1sxj_B 85 -------------------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADS-MTAGAQQALRRTMELYS--------- 135 (323)
T ss_dssp -------------------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGG-SCHHHHHTTHHHHHHTT---------
T ss_pred -------------------ChHHHHHHHHHHHhccccCCCCCceEEEEECccc-CCHHHHHHHHHHHhccC---------
Confidence 0011112222222 23367999999999 99999999999998631
Q ss_pred ecCCcEEEEecCC
Q 001355 843 SISGMIFVATSTI 855 (1093)
Q Consensus 843 ~l~naI~IlTSN~ 855 (1093)
.+++||++||.
T Consensus 136 --~~~~~il~~~~ 146 (323)
T 1sxj_B 136 --NSTRFAFACNQ 146 (323)
T ss_dssp --TTEEEEEEESC
T ss_pred --CCceEEEEeCC
Confidence 35678888873
No 61
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.99 E-value=6e-09 Score=112.77 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=82.1
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.|+|+++++..+...+.......... ....+.+..++|+||+|+|||++|++||..+ ..+|+.++++....
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~---- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQ-KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVE---- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTT----
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHH-HcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHH----
Confidence 568999999988887765532211000 0000112359999999999999999999987 45788888775321
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCH--------------HHHHHHhhhhcCCeEecC
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADP--------------IVQSSLTKAISTGKFTDS 837 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~--------------~vq~~Ll~aLe~Gr~~d~ 837 (1093)
.+.|.. ......+.+.......+|+||||||. +.. ..++.++..++.-.
T Consensus 84 -------~~~~~~-----~~~~~~~~~~a~~~~~~il~iDeid~-l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---- 146 (257)
T 1lv7_A 84 -------MFVGVG-----ASRVRDMFEQAKKAAPCIIFIDEIDA-VGRQRGAGLGGGHDEREQTLNQMLVEMDGFE---- 146 (257)
T ss_dssp -------SCCCCC-----HHHHHHHHHHHHTTCSEEEEETTHHH-HTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC----
T ss_pred -------Hhhhhh-----HHHHHHHHHHHHHcCCeeehhhhhhh-hccCCCCCcCCCchHHHHHHHHHHHHhhCcc----
Confidence 122211 11223344444444558999999987 432 45566666665311
Q ss_pred CCeEeecCCcEEEEecCC
Q 001355 838 YGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 838 ~G~~V~l~naI~IlTSN~ 855 (1093)
.-.+.+||+|||.
T Consensus 147 -----~~~~~~vI~~tn~ 159 (257)
T 1lv7_A 147 -----GNEGIIVIAATNR 159 (257)
T ss_dssp -----SSSCEEEEEEESC
T ss_pred -----cCCCEEEEEeeCC
Confidence 1235778888884
No 62
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.99 E-value=1.9e-08 Score=105.07 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=78.6
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcccc--C
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRV--S 769 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~--~ 769 (1093)
+.++|+++++..+...+...+. ...++|+||+|+|||++|+++++.+.... .++...+...... .
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~------------~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 89 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRI------------HHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREI 89 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCC------------CSEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCSSCCSCSHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCC------------CeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCCCCcccHHHHHH
Confidence 4689999999988887754211 12689999999999999999998874322 1111111110000 0
Q ss_pred CCCccccCCCccccccc-cccchhhhHHHHHHH----hCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeec
Q 001355 770 QPNSIFDCQNIDFCDCK-LRGKVLVDYIYQEFR----SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSI 844 (1093)
Q Consensus 770 ~~~si~~~~~l~G~~~g-~~g~~~~~~l~eal~----~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l 844 (1093)
.... ...++..... .........+.+.+. .....||||||++. ++...++.|++.+++. -
T Consensus 90 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-----------~ 154 (250)
T 1njg_A 90 EQGR---FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHM-LSRHSFNALLKTLEEP-----------P 154 (250)
T ss_dssp HTTC---CSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGG-SCHHHHHHHHHHHHSC-----------C
T ss_pred hccC---CcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECccc-ccHHHHHHHHHHHhcC-----------C
Confidence 0000 0011111110 011111122222222 12357999999999 9999999999999853 1
Q ss_pred CCcEEEEecCC
Q 001355 845 SGMIFVATSTI 855 (1093)
Q Consensus 845 ~naI~IlTSN~ 855 (1093)
.+.++|++||.
T Consensus 155 ~~~~~i~~t~~ 165 (250)
T 1njg_A 155 EHVKFLLATTD 165 (250)
T ss_dssp TTEEEEEEESC
T ss_pred CceEEEEEeCC
Confidence 35678888873
No 63
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.97 E-value=1.2e-10 Score=141.69 Aligned_cols=154 Identities=8% Similarity=0.042 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEe
Q 001355 681 RDYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHV 760 (1093)
Q Consensus 681 e~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~i 760 (1093)
+.+..|.+.|...|+||++++.+|..++........ +. ..-+.+.++||+||||||||.+|++||+.+. ..+...
T Consensus 284 ~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~-~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~---r~~~~~ 358 (595)
T 3f9v_A 284 WIRDRIISSIAPSIYGHWELKEALALALFGGVPKVL-ED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAP---RAVYTT 358 (595)
T ss_dssp TGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEET-TT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCS---CEECCC
T ss_pred HHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccc-cC-CCcCCCcceEEECCCchHHHHHHHHHHHhCC---CceecC
Confidence 346678888999999999988776544332210000 00 0113445899999999999999999998762 222111
Q ss_pred ecCCccccCCCCccccCCCccccccc--cccch--hhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEec
Q 001355 761 DVSSEQRVSQPNSIFDCQNIDFCDCK--LRGKV--LVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTD 836 (1093)
Q Consensus 761 d~s~~~~~~~~~si~~~~~l~G~~~g--~~g~~--~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d 836 (1093)
..... . .++.+.... +.|.. ..+.+.. ..++|+||||||+ +++..|+.|+++|++|.++.
T Consensus 359 ~~~~~-----~------~~l~~~~~~~~~~g~~~~~~G~l~~----A~~gil~IDEid~-l~~~~q~~Ll~~le~~~i~i 422 (595)
T 3f9v_A 359 GKGST-----A------AGLTAAVVREKGTGEYYLEAGALVL----ADGGIAVIDEIDK-MRDEDRVAIHEAMEQQTVSI 422 (595)
T ss_dssp TTCST-----T------TTSEEECSSGGGTSSCSEEECHHHH----HSSSEECCTTTTC-CCSHHHHHHHHHHHSSSEEE
T ss_pred CCccc-----c------ccccceeeeccccccccccCCeeEe----cCCCcEEeehhhh-CCHhHhhhhHHHHhCCEEEE
Confidence 11000 0 011111000 00100 0122322 2468999999999 99999999999999999874
Q ss_pred C-CCeEeec-CCcEEEEecCC
Q 001355 837 S-YGRDVSI-SGMIFVATSTI 855 (1093)
Q Consensus 837 ~-~G~~V~l-~naI~IlTSN~ 855 (1093)
. .|....+ .+.+||+|+|.
T Consensus 423 ~~~g~~~~~~~~~~vIaatNp 443 (595)
T 3f9v_A 423 AKAGIVAKLNARAAVIAAGNP 443 (595)
T ss_dssp ESSSSEEEECCCCEEEEEECC
T ss_pred ecCCcEEEecCceEEEEEcCC
Confidence 2 3433333 56889999996
No 64
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.97 E-value=1.2e-09 Score=123.91 Aligned_cols=145 Identities=10% Similarity=0.075 Sum_probs=84.3
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC------CCceEEeecCCc
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN------KGKLIHVDVSSE 765 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs------~~~fv~id~s~~ 765 (1093)
+.++|+++.+..+...+.....+. ....++|+||+|+|||.+|+++++.+... ...++.++|...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~---------~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGE---------KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSC---------CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCC---------CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 568999999888888776542211 11369999999999999999999887432 567888998753
Q ss_pred cccCC-CCccccCCCccccccccccc---hhhhHHHHHHHhCC-ceEEEEcccccccCHH--HHHHHhhhhcCCeEecCC
Q 001355 766 QRVSQ-PNSIFDCQNIDFCDCKLRGK---VLVDYIYQEFRSKP-YSVVFLEDLDKAADPI--VQSSLTKAISTGKFTDSY 838 (1093)
Q Consensus 766 ~~~~~-~~si~~~~~l~G~~~g~~g~---~~~~~l~eal~~~p-~~VI~LDEVDkiad~~--vq~~Ll~aLe~Gr~~d~~ 838 (1093)
..... ...+. ..+|....+.|. ...+.+...+.... ..||||||++. +... .+..|..+++......
T Consensus 90 ~~~~~~~~~l~---~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~-l~~~~~~~~~l~~l~~~~~~~~-- 163 (387)
T 2v1u_A 90 ETPYRVASAIA---EAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDF-LPKRPGGQDLLYRITRINQELG-- 163 (387)
T ss_dssp CSHHHHHHHHH---HHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTH-HHHSTTHHHHHHHHHHGGGCC---
T ss_pred CCHHHHHHHHH---HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhh-hcccCCCChHHHhHhhchhhcC--
Confidence 21000 00000 000111111121 22345555554332 45999999999 7665 6666666665321000
Q ss_pred CeEeecCCcEEEEecCC
Q 001355 839 GRDVSISGMIFVATSTI 855 (1093)
Q Consensus 839 G~~V~l~naI~IlTSN~ 855 (1093)
+ -.+.+||++||.
T Consensus 164 ---~-~~~~~~I~~t~~ 176 (387)
T 2v1u_A 164 ---D-RVWVSLVGITNS 176 (387)
T ss_dssp --------CEEEEECSC
T ss_pred ---C-CceEEEEEEECC
Confidence 0 135678888884
No 65
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.93 E-value=5.1e-09 Score=124.59 Aligned_cols=136 Identities=16% Similarity=0.127 Sum_probs=88.3
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..|+|++.++..|.+.+.........-.....+.+..+||+||+|||||.+|++||..+ ..+|+.++|+....
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l~~---- 276 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS---- 276 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHHHT----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHhhh----
Confidence 46899999999998888754210000000000122469999999999999999999887 67899999886421
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc----------CHHHHHHHhhhhcCCeEecCCCeE
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA----------DPIVQSSLTKAISTGKFTDSYGRD 841 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia----------d~~vq~~Ll~aLe~Gr~~d~~G~~ 841 (1093)
.++|...+ ...+.|..+. ....+||||||||.|+ ...+|..|++.|+.-.
T Consensus 277 -------~~~g~~~~----~~~~~f~~A~-~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-------- 336 (489)
T 3hu3_A 277 -------KLAGESES----NLRKAFEEAE-KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 336 (489)
T ss_dssp -------SCTTHHHH----HHHHHHHHHH-HTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC--------
T ss_pred -------hhcchhHH----HHHHHHHHHH-hcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc--------
Confidence 23332221 1223344443 4445899999997622 2478999999998421
Q ss_pred eecCCcEEEEecCC
Q 001355 842 VSISGMIFVATSTI 855 (1093)
Q Consensus 842 V~l~naI~IlTSN~ 855 (1093)
.-.+.+||+|||.
T Consensus 337 -~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 337 -QRAHVIVMAATNR 349 (489)
T ss_dssp -TTSCEEEEEEESC
T ss_pred -cCCceEEEEecCC
Confidence 1236789999985
No 66
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.89 E-value=1.6e-08 Score=119.73 Aligned_cols=134 Identities=19% Similarity=0.260 Sum_probs=83.9
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.|+|+++++..+...+...+...... +-..+.+..++|+||+|+|||++|++||... ..+|+.++++....
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~-~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~---- 87 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFN-RIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVE---- 87 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHH-TTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTT----
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHh-hcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHH----
Confidence 468999999998888876543100000 0000112249999999999999999999987 56899998875321
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCH--------------HHHHHHhhhhcCCeEecC
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADP--------------IVQSSLTKAISTGKFTDS 837 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~--------------~vq~~Ll~aLe~Gr~~d~ 837 (1093)
.++|. +......+.........+||||||||. +.. .+++.|+..|+. +.
T Consensus 88 -------~~~g~-----~~~~~r~lf~~A~~~~p~ILfIDEid~-l~~~r~~~~~g~~~~~~~~l~~LL~~ld~--~~-- 150 (476)
T 2ce7_A 88 -------LFVGV-----GAARVRDLFAQAKAHAPCIVFIDEIDA-VGRHRGAGLGGGHDEREQTLNQLLVEMDG--FD-- 150 (476)
T ss_dssp -------CCTTH-----HHHHHHHHHHHHHHTCSEEEEEETGGG-TCCC---------CHHHHHHHHHHHHHHH--SC--
T ss_pred -------HHhcc-----cHHHHHHHHHHHHhcCCCEEEEechhh-hhhhcccccCcCcHHHHHHHHHHHHHHhc--cC--
Confidence 12221 111122333333444458999999998 522 467778777762 10
Q ss_pred CCeEeecCCcEEEEecCC
Q 001355 838 YGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 838 ~G~~V~l~naI~IlTSN~ 855 (1093)
.-.+.+||+|||.
T Consensus 151 -----~~~~viVIaaTn~ 163 (476)
T 2ce7_A 151 -----SKEGIIVMAATNR 163 (476)
T ss_dssp -----GGGTEEEEEEESC
T ss_pred -----CCCCEEEEEecCC
Confidence 1236788999985
No 67
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.85 E-value=3.3e-09 Score=115.28 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=75.8
Q ss_pred cccCccHHHHHHHHHHHHHHHh-------cCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRI-------GNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rs-------g~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+.++|+++++..+...+..... +...+ ..++|+||+|||||++|++||..+ ..+|+.++++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~ 79 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIP--------KGVLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSS 79 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCC--------SCCCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCT
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCC--------ceEEEECCCCCcHHHHHHHHHHHh---CCCEEEechHH
Confidence 3478888888777776653221 11111 238999999999999999999987 45778787765
Q ss_pred ccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHH---------------HHHHHhhhh
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPI---------------VQSSLTKAI 829 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~---------------vq~~Ll~aL 829 (1093)
... .+.|.... ...+.+ +.......+||||||+|. +... .++.|+..+
T Consensus 80 ~~~-----------~~~~~~~~----~~~~~~-~~a~~~~~~vl~iDEid~-l~~~~~~~~~~~~~~~~~~~~~~ll~~l 142 (268)
T 2r62_A 80 FIE-----------MFVGLGAS----RVRDLF-ETAKKQAPSIIFIDEIDA-IGKSRAAGGVVSGNDEREQTLNQLLAEM 142 (268)
T ss_dssp TTT-----------SCSSSCSS----SSSTTH-HHHHHSCSCEEEESCGGG-TTC----------CCCSCSSTTTTTTTT
T ss_pred HHH-----------hhcchHHH----HHHHHH-HHHHhcCCeEEEEeChhh-hcccccccccCCCchhHHHHHHHHHHHh
Confidence 321 11121111 111223 333344558999999999 5432 344555555
Q ss_pred cCCeEecCCCeEeecCCcEEEEecCC
Q 001355 830 STGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 830 e~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
+.-. ....+.+||+|||.
T Consensus 143 ~~~~--------~~~~~v~vi~ttn~ 160 (268)
T 2r62_A 143 DGFG--------SENAPVIVLAATNR 160 (268)
T ss_dssp TCSS--------CSCSCCEEEECBSC
T ss_pred hCcc--------cCCCCEEEEEecCC
Confidence 4210 01234678888874
No 68
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=2.5e-08 Score=112.61 Aligned_cols=117 Identities=25% Similarity=0.396 Sum_probs=78.6
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCC--ceEEeecCCccccC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKG--KLIHVDVSSEQRVS 769 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~--~fv~id~s~~~~~~ 769 (1093)
..++||++++..|...|...+. ..++|+||+|+|||++|+++|+.+++... .++.++.+..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~-------------~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~---- 87 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKL-------------PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD---- 87 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCC-------------CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC----
T ss_pred HHhcCcHHHHHHHHHHHhcCCC-------------ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc----
Confidence 4578999999888777653210 13899999999999999999999876432 2344443321
Q ss_pred CCCccccCCCccccccccccchhhhHHHHHHH------hCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEee
Q 001355 770 QPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR------SKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVS 843 (1093)
Q Consensus 770 ~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~------~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~ 843 (1093)
.|...+....+.+. ...+.|++|||+|. +....|+.|++++++..
T Consensus 88 ------------------~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~-l~~~~~~~L~~~le~~~---------- 138 (340)
T 1sxj_C 88 ------------------RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADA-MTNAAQNALRRVIERYT---------- 138 (340)
T ss_dssp ------------------CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGG-SCHHHHHHHHHHHHHTT----------
T ss_pred ------------------ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCC-CCHHHHHHHHHHHhcCC----------
Confidence 01111111111111 12357999999999 99999999999998631
Q ss_pred cCCcEEEEecCC
Q 001355 844 ISGMIFVATSTI 855 (1093)
Q Consensus 844 l~naI~IlTSN~ 855 (1093)
.+++||++||.
T Consensus 139 -~~~~~il~~n~ 149 (340)
T 1sxj_C 139 -KNTRFCVLANY 149 (340)
T ss_dssp -TTEEEEEEESC
T ss_pred -CCeEEEEEecC
Confidence 35678888884
No 69
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=2.6e-08 Score=111.58 Aligned_cols=114 Identities=15% Similarity=0.185 Sum_probs=77.5
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhc--c-CCCceEEeecCCccccCCCC
Q 001355 696 WQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVF--G-NKGKLIHVDVSSEQRVSQPN 772 (1093)
Q Consensus 696 GQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lf--g-s~~~fv~id~s~~~~~~~~~ 772 (1093)
||++++..+...|...+ .-.+||+||+|+|||.+|++||+... . ....|+.++...
T Consensus 1 g~~~~~~~L~~~i~~~~-------------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-------- 59 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE-------------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-------- 59 (305)
T ss_dssp ---CHHHHHHHHHHTCS-------------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------
T ss_pred ChHHHHHHHHHHHHCCC-------------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------
Confidence 78888888887775432 12699999999999999999998531 1 123444444321
Q ss_pred ccccCCCccccccccccchhhhHHHHHHHhCC----ceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcE
Q 001355 773 SIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKP----YSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMI 848 (1093)
Q Consensus 773 si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p----~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI 848 (1093)
..++.+.++.+.+.+...| +.||||||+|. ++...++.|++.||+.. .+++
T Consensus 60 -------------~~~~id~ir~li~~~~~~p~~~~~kvviIdead~-lt~~a~naLLk~LEep~-----------~~t~ 114 (305)
T 2gno_A 60 -------------ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCER-MTQQAANAFLKALEEPP-----------EYAV 114 (305)
T ss_dssp -------------SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGG-BCHHHHHHTHHHHHSCC-----------TTEE
T ss_pred -------------CCCCHHHHHHHHHHHhhccccCCceEEEeccHHH-hCHHHHHHHHHHHhCCC-----------CCeE
Confidence 0122233445555555555 46999999999 99999999999999642 4678
Q ss_pred EEEecCC
Q 001355 849 FVATSTI 855 (1093)
Q Consensus 849 ~IlTSN~ 855 (1093)
||++|+.
T Consensus 115 fIl~t~~ 121 (305)
T 2gno_A 115 IVLNTRR 121 (305)
T ss_dssp EEEEESC
T ss_pred EEEEECC
Confidence 9998874
No 70
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.82 E-value=8.5e-08 Score=113.03 Aligned_cols=65 Identities=22% Similarity=0.137 Sum_probs=52.3
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.+.++||++++..+...+...+.+...+ ..+||+||+|||||.+|++||+.+ +...+|+.++++.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~--------~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~~~ 100 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAG--------RAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVGSE 100 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTT--------CEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEGGG
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCC--------CeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeHHH
Confidence 4678999999999888887776654322 259999999999999999999997 4347888888764
No 71
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.80 E-value=3.6e-08 Score=110.44 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=57.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
+++|+||+|+|||++|++|+..+.....+++++++..... .+.+.... .....+.+.+.. ..|
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~----~~~~~~~~~~~~--~~v 101 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ-----------AMVEHLKK----GTINEFRNMYKS--VDL 101 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH-----------HHHHHHHH----TCHHHHHHHHHT--CSE
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-----------HHHHHHHc----CcHHHHHHHhcC--CCE
Confidence 5999999999999999999998876667888888765311 00000000 011233344432 469
Q ss_pred EEEcccccccCH--HHHHHHhhhhc
Q 001355 808 VFLEDLDKAADP--IVQSSLTKAIS 830 (1093)
Q Consensus 808 I~LDEVDkiad~--~vq~~Ll~aLe 830 (1093)
||||||+. +.. ..|..|+..++
T Consensus 102 L~iDEi~~-l~~~~~~~~~l~~~l~ 125 (324)
T 1l8q_A 102 LLLDDVQF-LSGKERTQIEFFHIFN 125 (324)
T ss_dssp EEEECGGG-GTTCHHHHHHHHHHHH
T ss_pred EEEcCccc-ccCChHHHHHHHHHHH
Confidence 99999999 764 67888887775
No 72
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.80 E-value=5.6e-08 Score=102.51 Aligned_cols=77 Identities=12% Similarity=0.249 Sum_probs=54.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
.++|+||+|+|||++|+++++.+......++.+++....... . .... .+ ....|
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~-----~~~~----~~--~~~~v 107 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS---------------T-----ALLE----GL--EQFDL 107 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC---------------G-----GGGT----TG--GGSSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH---------------H-----HHHH----hc--cCCCE
Confidence 699999999999999999999887666777888876532110 0 0001 11 12469
Q ss_pred EEEcccccccCHHH--HHHHhhhhcC
Q 001355 808 VFLEDLDKAADPIV--QSSLTKAIST 831 (1093)
Q Consensus 808 I~LDEVDkiad~~v--q~~Ll~aLe~ 831 (1093)
|||||++. ++... +..|+.+++.
T Consensus 108 liiDe~~~-~~~~~~~~~~l~~~l~~ 132 (242)
T 3bos_A 108 ICIDDVDA-VAGHPLWEEAIFDLYNR 132 (242)
T ss_dssp EEEETGGG-GTTCHHHHHHHHHHHHH
T ss_pred EEEecccc-ccCCHHHHHHHHHHHHH
Confidence 99999999 76544 8888888763
No 73
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=5.6e-08 Score=109.65 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=72.9
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCC-
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQ- 770 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~- 770 (1093)
..++||++++..+...+. ... +... ++|+||+|+|||+++++|+..+++....-+.++...+.....
T Consensus 14 ~~~vg~~~~~~~l~~~~~------~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSD------QPR-----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp GGCCSCHHHHHHHHTTTT------CTT-----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred HHhcCCHHHHHHHHHHHh------hCC-----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 458899988876655441 111 1122 899999999999999999997765433222222111000000
Q ss_pred ---CCccccCC--CccccccccccchhhhH-HHHHHH-------------hCCceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 771 ---PNSIFDCQ--NIDFCDCKLRGKVLVDY-IYQEFR-------------SKPYSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 771 ---~~si~~~~--~l~G~~~g~~g~~~~~~-l~eal~-------------~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
-..+.... .+.+...+......... +..... ...+.||+|||++. ++...++.|++.|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANS-LTKDAQAALRRTMEK 160 (354)
T ss_dssp ----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTS-SCHHHHHHHHHHHHH
T ss_pred cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccc-cCHHHHHHHHHHHHh
Confidence 00000000 00000001000001111 222111 12456999999999 999999999999985
Q ss_pred CeEecCCCeEeecCCcEEEEecCC
Q 001355 832 GKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 832 Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
-. .+.+||++|+.
T Consensus 161 ~~-----------~~~~~Il~t~~ 173 (354)
T 1sxj_E 161 YS-----------KNIRLIMVCDS 173 (354)
T ss_dssp ST-----------TTEEEEEEESC
T ss_pred hc-----------CCCEEEEEeCC
Confidence 21 35678888873
No 74
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=7.6e-08 Score=115.24 Aligned_cols=131 Identities=11% Similarity=0.050 Sum_probs=74.7
Q ss_pred cccCccHHHHHHHHHHHHHHHh----cCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccc
Q 001355 692 EKVGWQDEAICTISQAVSRWRI----GNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQR 767 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rs----g~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~ 767 (1093)
+.++|+++++..|...+..... +...+........-.++|+||+|+|||.+|++||+.+ +..++.++++....
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRS 115 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcch
Confidence 4689999999999998876542 2222111000112479999999999999999999988 56788888875321
Q ss_pred cCCCCccccCCCccccccccccchhhhHHHHH-HHhCCceEEEEcccccccCHHH---HHHHhhhhcC
Q 001355 768 VSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQE-FRSKPYSVVFLEDLDKAADPIV---QSSLTKAIST 831 (1093)
Q Consensus 768 ~~~~~si~~~~~l~G~~~g~~g~~~~~~l~ea-l~~~p~~VI~LDEVDkiad~~v---q~~Ll~aLe~ 831 (1093)
........ ....+. .... .+.....+. .......||||||||. +.... .+.|++.+++
T Consensus 116 ~~~~~~~i--~~~~~~-~~~~--~~~~~~~~~~~~~~~~~vliIDEid~-l~~~~~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 116 KTLLNAGV--KNALDN-MSVV--GYFKHNEEAQNLNGKHFVIIMDEVDG-MSGGDRGGVGQLAQFCRK 177 (516)
T ss_dssp HHHHHHTG--GGGTTB-CCST--TTTTC----CCSSTTSEEEEECSGGG-CCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHhcc-ccHH--HHHhhhhhhhhccCCCeEEEEECCCc-cchhhHHHHHHHHHHHHh
Confidence 00000000 000000 0000 000000000 1224567999999999 75533 3778888875
No 75
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.76 E-value=1.9e-08 Score=101.68 Aligned_cols=151 Identities=20% Similarity=0.295 Sum_probs=118.1
Q ss_pred CCchhhHHHHHHHhhcccccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccH
Q 001355 209 DDVDENCRRIGEVLAGRDEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNV 285 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r 285 (1093)
.|++++++++++.|.+ +..+|.+|+|++|+| .++.++..+... ..|..+.+..++.++ +..+..+..++
T Consensus 25 ~g~~~~~~~l~~~l~~---~~~~~vll~G~~G~GKT~la~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~ 96 (187)
T 2p65_A 25 IGRDTEIRRAIQILSR---RTKNNPILLGDPGVGKTAIVEGLAIKIVQG---DVPDSLKGRKLVSLD--LSSLIAGAKYR 96 (187)
T ss_dssp CSCHHHHHHHHHHHTS---SSSCEEEEESCGGGCHHHHHHHHHHHHHTT---CSCTTTTTCEEEEEC--HHHHHHHCCSH
T ss_pred hcchHHHHHHHHHHhC---CCCCceEEECCCCCCHHHHHHHHHHHHHhc---CCcchhcCCeEEEEe--HHHhhcCCCch
Confidence 5899999999999998 788899999999998 478888887664 567777889999998 88777777789
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCC-cchHHHHHHHHHHhhhcCCCCCcEEEEEecccHHHHHhhhhc
Q 001355 286 EMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSV-STEAARFVVSQLTSLLKSGNGEKLWLIGAAMSYETYLKMLAK 364 (1093)
Q Consensus 286 ~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~-~~~~~~~~v~el~~Ll~~~~~g~lwliG~a~T~~tY~k~~~~ 364 (1093)
++.+.++.++...+... +++.||+|||++++.+.+. ..+. ..+...+..++. .+++.+|++ ++...+.+....
T Consensus 97 ~~~~~~~~~~~~~~~~~-~~~~vl~iDe~~~l~~~~~~~~~~-~~~~~~l~~~~~---~~~~~ii~~-~~~~~~~~~~~~ 170 (187)
T 2p65_A 97 GDFEERLKSILKEVQDA-EGQVVMFIDEIHTVVGAGAVAEGA-LDAGNILKPMLA---RGELRCIGA-TTVSEYRQFIEK 170 (187)
T ss_dssp HHHHHHHHHHHHHHHHT-TTSEEEEETTGGGGSSSSSSCTTS-CCTHHHHHHHHH---TTCSCEEEE-ECHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHhc-CCceEEEEeCHHHhcccccccccc-hHHHHHHHHHHh---cCCeeEEEe-cCHHHHHHHHhc
Confidence 99999999988877764 6789999999999985433 1110 111122344444 468999998 599998888788
Q ss_pred CCCCCCCCc
Q 001355 365 FPGLDNDWD 373 (1093)
Q Consensus 365 ~PslE~~w~ 373 (1093)
+|.|-++++
T Consensus 171 ~~~l~~R~~ 179 (187)
T 2p65_A 171 DKALERRFQ 179 (187)
T ss_dssp CHHHHHHEE
T ss_pred cHHHHHhcC
Confidence 899988885
No 76
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.75 E-value=2.4e-08 Score=112.95 Aligned_cols=141 Identities=12% Similarity=0.122 Sum_probs=84.7
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC---CCceEEeecCCcccc
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN---KGKLIHVDVSSEQRV 768 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs---~~~fv~id~s~~~~~ 768 (1093)
+.++|+++.+..+...+..+..+. ....++|+||+|+|||.+++.+++.+... ...++.++|......
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~---------~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 90 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREE---------KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTP 90 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTC---------CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCH
Confidence 467999988888887776543321 11369999999999999999999877543 456788887642110
Q ss_pred CC-CCccccCCCccccccccccc---hhhhHHHHHHHhCC-ceEEEEcccccccC----HHHHHHHhhhhcCCeEecCCC
Q 001355 769 SQ-PNSIFDCQNIDFCDCKLRGK---VLVDYIYQEFRSKP-YSVVFLEDLDKAAD----PIVQSSLTKAISTGKFTDSYG 839 (1093)
Q Consensus 769 ~~-~~si~~~~~l~G~~~g~~g~---~~~~~l~eal~~~p-~~VI~LDEVDkiad----~~vq~~Ll~aLe~Gr~~d~~G 839 (1093)
.. ...+. ..+|......+. .....+.+.+.... ..||+|||++. +. ...+..|++.++..
T Consensus 91 ~~~~~~i~---~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~-l~~~~~~~~l~~l~~~~~~~------- 159 (386)
T 2qby_A 91 YRVLADLL---ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDA-FVKKYNDDILYKLSRINSEV------- 159 (386)
T ss_dssp HHHHHHHT---TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHH-HHHSSCSTHHHHHHHHHHSC-------
T ss_pred HHHHHHHH---HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhh-hhccCcCHHHHHHhhchhhc-------
Confidence 00 00000 011111111111 22345555565443 56999999999 64 56777788777643
Q ss_pred eEeecCCcEEEEecCC
Q 001355 840 RDVSISGMIFVATSTI 855 (1093)
Q Consensus 840 ~~V~l~naI~IlTSN~ 855 (1093)
.-.+.+||++++.
T Consensus 160 ---~~~~~~~I~~~~~ 172 (386)
T 2qby_A 160 ---NKSKISFIGITND 172 (386)
T ss_dssp ---CC--EEEEEEESC
T ss_pred ---CCCeEEEEEEECC
Confidence 0125567888873
No 77
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.74 E-value=9e-09 Score=128.33 Aligned_cols=125 Identities=15% Similarity=0.165 Sum_probs=88.1
Q ss_pred CCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcE
Q 001355 231 KNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGV 307 (1093)
Q Consensus 231 ~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gv 307 (1093)
+..+|.|-||.| .++.++.. -|++++.++ ..+++ .++-|+.|.+++++-...+. ..+.
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~e-------------lg~~~~~v~--~~~l~--sk~~gese~~lr~lF~~A~~--~~Ps 299 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANE-------------TGAFFFLIN--GPEIM--SKLAGESESNLRKAFEEAEK--NAPA 299 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTT-------------TTCEEEEEE--HHHHH--SSCTTHHHHHHHHHHHHHTT--SCSE
T ss_pred CeEEEECCCCCCHHHHHHHHHHH-------------hCCeEEEEE--hHHhh--cccchHHHHHHHHHHHHHHH--cCCe
Confidence 578999999998 25555432 257889888 77774 46789999999999888774 5689
Q ss_pred EEEeCcchhhhcCCC--cchHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCC--CCcce-eeecc
Q 001355 308 VVNYGELKVLVSDSV--STEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDN--DWDLQ-LLPIH 380 (1093)
Q Consensus 308 il~igdl~~~v~~~~--~~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~--~w~Lq-~v~i~ 380 (1093)
||||+|+..+..... ..+..+.+++++-.++.. ..++.+.+|||| .. --.-||+|-+ +|+.+ .+++|
T Consensus 300 IIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT-N~-----~d~LD~ALrR~GRFd~~I~i~~P 372 (806)
T 3cf2_A 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT-NR-----PNSIDPALRRFGRFDREVDIGIP 372 (806)
T ss_dssp EEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC-SS-----TTTSCTTTTSTTSSCEEEECCCC
T ss_pred EEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec-CC-----hhhcCHHHhCCcccceEEecCCC
Confidence 999999999987532 234456677777666642 235679999984 32 2346888877 67655 34444
No 78
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.73 E-value=2.8e-08 Score=116.18 Aligned_cols=144 Identities=12% Similarity=0.062 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHH-HHHhccCCCceEEe
Q 001355 682 DYKTLRIALAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASAL-AEIVFGNKGKLIHV 760 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraL-A~~lfgs~~~fv~i 760 (1093)
-+..|.+.+.. |+||+++..+|.-++... ..+ .+.++++||.|++|+ ||.+|+++ +..+-+ ..|+..
T Consensus 204 ~~~~l~~sIap-I~G~e~vK~aLll~L~GG---~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR--~~ft~g 271 (506)
T 3f8t_A 204 PLTTFARAIAP-LPGAEEVGKMLALQLFSC---VGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPR--GVYVDL 271 (506)
T ss_dssp HHHHHHHHHCC-STTCHHHHHHHHHHHTTC---CSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSS--EEEEEG
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHcCC---ccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCC--eEEecC
Confidence 45667778888 999998876665554321 111 235678999999999 99999999 876522 223222
Q ss_pred ecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCe
Q 001355 761 DVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGR 840 (1093)
Q Consensus 761 d~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~ 840 (1093)
.++...+... . ..+. .|+. .-.+++....++|+|||||++ +++..|..|+++||+|.++-. |.
T Consensus 272 ~~ss~~gLt~-------s-~r~~-tG~~------~~~G~l~LAdgGvl~lDEIn~-~~~~~qsaLlEaMEe~~VtI~-G~ 334 (506)
T 3f8t_A 272 RRTELTDLTA-------V-LKED-RGWA------LRAGAAVLADGGILAVDHLEG-APEPHRWALMEAMDKGTVTVD-GI 334 (506)
T ss_dssp GGCCHHHHSE-------E-EEES-SSEE------EEECHHHHTTTSEEEEECCTT-CCHHHHHHHHHHHHHSEEEET-TE
T ss_pred CCCCccCceE-------E-EEcC-CCcc------cCCCeeEEcCCCeeehHhhhh-CCHHHHHHHHHHHhCCcEEEC-CE
Confidence 2211100000 0 0000 1100 001233334568999999999 999999999999999999877 66
Q ss_pred EeecCCcEEEEecCC
Q 001355 841 DVSISGMIFVATSTI 855 (1093)
Q Consensus 841 ~V~l~naI~IlTSN~ 855 (1093)
.--.+..||+|+|.
T Consensus 335 -~lparf~VIAA~NP 348 (506)
T 3f8t_A 335 -ALNARCAVLAAINP 348 (506)
T ss_dssp -EEECCCEEEEEECC
T ss_pred -EcCCCeEEEEEeCc
Confidence 32356789999996
No 79
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.73 E-value=2.6e-08 Score=100.62 Aligned_cols=156 Identities=21% Similarity=0.306 Sum_probs=120.2
Q ss_pred CCchhhHHHHHHHhhcccccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccH
Q 001355 209 DDVDENCRRIGEVLAGRDEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNV 285 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r 285 (1093)
.||+++++++++.|.+ ++.++.+|+|++|+| .++.++..+... ..|..+.+..++.++ +..+..+..+.
T Consensus 25 ~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~ 96 (195)
T 1jbk_A 25 IGRDEEIRRTIQVLQR---RTKNNPVLIGEPGVGKTAIVEGLAQRIING---EVPEGLKGRRVLALD--MGALVAGAKYR 96 (195)
T ss_dssp CSCHHHHHHHHHHHTS---SSSCEEEEECCTTSCHHHHHHHHHHHHHHT---CSCGGGTTCEEEEEC--HHHHHTTTCSH
T ss_pred ccchHHHHHHHHHHhc---CCCCceEEECCCCCCHHHHHHHHHHHHHhC---CCchhhcCCcEEEee--HHHHhccCCcc
Confidence 5799999999999998 778899999999998 488888887764 567778899999999 88888777889
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEEEecccHHHHHhhhhcC
Q 001355 286 EMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLIGAAMSYETYLKMLAKF 365 (1093)
Q Consensus 286 ~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwliG~a~T~~tY~k~~~~~ 365 (1093)
++++.+++++...+... +++.||+|||++++.+.+...+. ..+...+..++. .+++++|++ |+...|......+
T Consensus 97 ~~~~~~~~~~~~~~~~~-~~~~vl~iDe~~~l~~~~~~~~~-~~~~~~l~~~~~---~~~~~~i~~-~~~~~~~~~~~~~ 170 (195)
T 1jbk_A 97 GEFEERLKGVLNDLAKQ-EGNVILFIDELHTMVGAGKADGA-MDAGNMLKPALA---RGELHCVGA-TTLDEYRQYIEKD 170 (195)
T ss_dssp HHHHHHHHHHHHHHHHS-TTTEEEEEETGGGGTT------C-CCCHHHHHHHHH---TTSCCEEEE-ECHHHHHHHTTTC
T ss_pred ccHHHHHHHHHHHHhhc-CCCeEEEEeCHHHHhccCcccch-HHHHHHHHHhhc---cCCeEEEEe-CCHHHHHHHHhcC
Confidence 99999999988877653 77899999999999865421110 011123344554 468999998 5999999888888
Q ss_pred CCCCCCCcceeeecc
Q 001355 366 PGLDNDWDLQLLPIH 380 (1093)
Q Consensus 366 PslE~~w~Lq~v~i~ 380 (1093)
|+|-++++ .+.++
T Consensus 171 ~~l~~r~~--~i~~~ 183 (195)
T 1jbk_A 171 AALERRFQ--KVFVA 183 (195)
T ss_dssp HHHHTTEE--EEECC
T ss_pred HHHHHHhc--eeecC
Confidence 99988875 34444
No 80
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.72 E-value=4.6e-08 Score=122.01 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=84.8
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.|.|.++++..|.+.|.........-.+-..+.+.-+||+||+|||||++|++||..+ +.+|+.+++....+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~~~l~s---- 276 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS---- 276 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEHHHHHS----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEhHHhhc----
Confidence 45788888888888777542110000000001222359999999999999999999877 66899998875321
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccC----------HHHHHHHhhhhcCCeEecCCCeE
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAAD----------PIVQSSLTKAISTGKFTDSYGRD 841 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad----------~~vq~~Ll~aLe~Gr~~d~~G~~ 841 (1093)
.+.|.. ...+..+++..+.+..+||||||||.|+. ..+.+.|+..|+.-.
T Consensus 277 -------k~~ges-----e~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~-------- 336 (806)
T 3cf2_A 277 -------KLAGES-----ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 336 (806)
T ss_dssp -------SCTTHH-----HHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC--------
T ss_pred -------ccchHH-----HHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc--------
Confidence 222211 12234455555566669999999998442 346667777776311
Q ss_pred eecCCcEEEEecCC
Q 001355 842 VSISGMIFVATSTI 855 (1093)
Q Consensus 842 V~l~naI~IlTSN~ 855 (1093)
.-.+++||.|||.
T Consensus 337 -~~~~V~VIaaTN~ 349 (806)
T 3cf2_A 337 -QRAHVIVMAATNR 349 (806)
T ss_dssp -GGGCEEEEEECSS
T ss_pred -ccCCEEEEEecCC
Confidence 1235778898884
No 81
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.68 E-value=2.1e-07 Score=109.33 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=55.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccC--CCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGN--KGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs--~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
+++|+||+|+|||++|++|+..+... ...++++++..+.. .+.+.-. ......+....+ ...
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~-----------~~~~~~~----~~~~~~~~~~~~-~~~ 195 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN-----------DLVDSMK----EGKLNEFREKYR-KKV 195 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH-----------HHHHHHH----TTCHHHHHHHHT-TTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-----------HHHHHHH----cccHHHHHHHhc-CCC
Confidence 69999999999999999999988544 45677777664211 0000000 001122333332 134
Q ss_pred eEEEEcccccccCH--HHHHHHhhhhc
Q 001355 806 SVVFLEDLDKAADP--IVQSSLTKAIS 830 (1093)
Q Consensus 806 ~VI~LDEVDkiad~--~vq~~Ll~aLe 830 (1093)
.||||||++. +.. ..|..|+..++
T Consensus 196 ~vL~IDEi~~-l~~~~~~q~~l~~~l~ 221 (440)
T 2z4s_A 196 DILLIDDVQF-LIGKTGVQTELFHTFN 221 (440)
T ss_dssp SEEEEECGGG-GSSCHHHHHHHHHHHH
T ss_pred CEEEEeCccc-ccCChHHHHHHHHHHH
Confidence 6999999999 654 78888888875
No 82
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.68 E-value=6.8e-08 Score=114.99 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=78.9
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.|+|+++++..+...+.......... .-..+.+-.++|+||+|+|||++|++||..+ ..+|+.++++....
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~-~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~---- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFH-EMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVE---- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTT-TTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTS----
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhh-hccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHH----
Confidence 458999999888888776543210000 0001111239999999999999999999887 46789998875321
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccC--------------HHHHHHHhhhhcCCeEecC
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAAD--------------PIVQSSLTKAISTGKFTDS 837 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad--------------~~vq~~Ll~aLe~Gr~~d~ 837 (1093)
.+.|. +...+..+.+.......+|+||||||. +. ....+.|+..|+.+.
T Consensus 103 -------~~~g~-----~~~~v~~lfq~a~~~~p~il~IDEId~-l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~---- 165 (499)
T 2dhr_A 103 -------MFVGV-----GAARVRDLFETAKRHAPCIVFIDEIDA-VGRKRGSGVGGGNDEREQTLNQLLVEMDGFE---- 165 (499)
T ss_dssp -------SCTTH-----HHHHHHHHTTTSSSSSSCEEEEECGGG-TCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC----
T ss_pred -------hhhhh-----HHHHHHHHHHHHHhcCCCEEEEehHHH-HHHhhccCcCCCcHHHHHHHHHHHHHhcccc----
Confidence 11111 001111222222222347999999997 42 134566666666442
Q ss_pred CCeEeecCCcEEEEecCC
Q 001355 838 YGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 838 ~G~~V~l~naI~IlTSN~ 855 (1093)
.-..+|+|+++|.
T Consensus 166 -----~~~~viviAatn~ 178 (499)
T 2dhr_A 166 -----KDTAIVVMAATNR 178 (499)
T ss_dssp -----SSCCCEEEECCSC
T ss_pred -----cCccEEEEEecCC
Confidence 1135677887774
No 83
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.68 E-value=4.6e-08 Score=115.75 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=68.8
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC-------CCceEEeecCCc
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN-------KGKLIHVDVSSE 765 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs-------~~~fv~id~s~~ 765 (1093)
.|+|+++.+..+...+.+. . ...+||+||+|||||.+|++||..+... +..|+.+|++.
T Consensus 181 ~iiGr~~~i~~l~~~l~r~----~---------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~- 246 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSRR----T---------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT- 246 (468)
T ss_dssp CCCCCHHHHHHHHHHHHCS----S---------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----
T ss_pred CccCcHHHHHHHHHHHhcc----C---------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-
Confidence 4899999888877766431 0 1258999999999999999999988542 34566666651
Q ss_pred cccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecC
Q 001355 766 QRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSIS 845 (1093)
Q Consensus 766 ~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~ 845 (1093)
.+.|... .....+.+.+......||||| ...+.++.|+++|+.|
T Consensus 247 -------------~~~g~~e-----~~~~~~~~~~~~~~~~iLfiD-----~~~~a~~~L~~~L~~g------------- 290 (468)
T 3pxg_A 247 -------------KYRGEFE-----DRLKKVMDEIRQAGNIILFID-----AAIDASNILKPSLARG------------- 290 (468)
T ss_dssp -------------------C-----TTHHHHHHHHHTCCCCEEEEC-----C--------CCCTTSS-------------
T ss_pred -------------cccchHH-----HHHHHHHHHHHhcCCeEEEEe-----CchhHHHHHHHhhcCC-------------
Confidence 1111111 122345555666667899999 2346889999999866
Q ss_pred CcEEEEecCC
Q 001355 846 GMIFVATSTI 855 (1093)
Q Consensus 846 naI~IlTSN~ 855 (1093)
+.++|++||.
T Consensus 291 ~v~vI~at~~ 300 (468)
T 3pxg_A 291 ELQCIGATTL 300 (468)
T ss_dssp SCEEEEECCT
T ss_pred CEEEEecCCH
Confidence 3458888885
No 84
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.66 E-value=2e-06 Score=97.07 Aligned_cols=104 Identities=14% Similarity=0.145 Sum_probs=68.4
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
..++||+.++..+...|...+..... .-.++|+||+|+|||++|++||..+. .++........
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~--------~~~~ll~Gp~G~GKTTLa~~ia~~l~---~~~~~~sg~~~------ 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEV--------LDHVLLAGPPGLGKTTLAHIIASELQ---TNIHVTSGPVL------ 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCC--------CCCEEEESSTTSSHHHHHHHHHHHHT---CCEEEEETTTC------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCC--------CCeEEEECCCCCcHHHHHHHHHHHhC---CCEEEEechHh------
Confidence 35789999999988888765431111 12589999999999999999999872 23322221100
Q ss_pred CccccCCCccccccccccchhhhHHHHHHH-hCCceEEEEcccccccCHHHHHHHhhhhcCC
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFR-SKPYSVVFLEDLDKAADPIVQSSLTKAISTG 832 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~-~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~G 832 (1093)
..+ ..+...+. .....|+||||++. +.+.+++.|+.+++.+
T Consensus 88 ---------------~~~----~~l~~~~~~~~~~~v~~iDE~~~-l~~~~~e~L~~~~~~~ 129 (334)
T 1in4_A 88 ---------------VKQ----GDMAAILTSLERGDVLFIDEIHR-LNKAVEELLYSAIEDF 129 (334)
T ss_dssp ---------------CSH----HHHHHHHHHCCTTCEEEEETGGG-CCHHHHHHHHHHHHTS
T ss_pred ---------------cCH----HHHHHHHHHccCCCEEEEcchhh-cCHHHHHHHHHHHHhc
Confidence 001 11222221 12457999999999 8888999998888764
No 85
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.63 E-value=2.3e-08 Score=100.96 Aligned_cols=125 Identities=21% Similarity=0.187 Sum_probs=79.1
Q ss_pred HhcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhcc-------CCCceEEeec
Q 001355 690 LAEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFG-------NKGKLIHVDV 762 (1093)
Q Consensus 690 L~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfg-------s~~~fv~id~ 762 (1093)
-...++|+++.+..+...+.. . ....++|+||+|+|||++|+++++.+.. ....++.+++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~-------~------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR-------R------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS-------S------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred ccchhhcchHHHHHHHHHHhC-------C------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 346799999888777766532 0 1136899999999999999999998754 2445666665
Q ss_pred CCccccCCCCccccCCCccccccccccchhhhHHHHHHHhC-CceEEEEcccccccC---------HHHHHHHhhhhcCC
Q 001355 763 SSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSK-PYSVVFLEDLDKAAD---------PIVQSSLTKAISTG 832 (1093)
Q Consensus 763 s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~-p~~VI~LDEVDkiad---------~~vq~~Ll~aLe~G 832 (1093)
...... ..+.+.. ......+.+.+... ...||||||++. +. ..+++.|...++++
T Consensus 87 ~~~~~~---------~~~~~~~-----~~~~~~~~~~~~~~~~~~vl~iDe~~~-l~~~~~~~~~~~~~~~~l~~~~~~~ 151 (187)
T 2p65_A 87 SSLIAG---------AKYRGDF-----EERLKSILKEVQDAEGQVVMFIDEIHT-VVGAGAVAEGALDAGNILKPMLARG 151 (187)
T ss_dssp HHHHHH---------CCSHHHH-----HHHHHHHHHHHHHTTTSEEEEETTGGG-GSSSSSSCTTSCCTHHHHHHHHHTT
T ss_pred HHhhcC---------CCchhHH-----HHHHHHHHHHHHhcCCceEEEEeCHHH-hcccccccccchHHHHHHHHHHhcC
Confidence 432100 0000100 01122333333333 446999999999 75 56778888888753
Q ss_pred eEecCCCeEeecCCcEEEEecCC
Q 001355 833 KFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 833 r~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
+.+||+++|.
T Consensus 152 -------------~~~ii~~~~~ 161 (187)
T 2p65_A 152 -------------ELRCIGATTV 161 (187)
T ss_dssp -------------CSCEEEEECH
T ss_pred -------------CeeEEEecCH
Confidence 3558888873
No 86
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.60 E-value=4.1e-08 Score=99.10 Aligned_cols=124 Identities=17% Similarity=0.211 Sum_probs=77.9
Q ss_pred hcccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhcc-------CCCceEEeecC
Q 001355 691 AEKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFG-------NKGKLIHVDVS 763 (1093)
Q Consensus 691 ~e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfg-------s~~~fv~id~s 763 (1093)
...++|+++.+..+...+.. . ....++|+||+|+|||.+|+++++.+.. ...+++.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~-----~--------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQR-----R--------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 87 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS-----S--------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH
T ss_pred ccccccchHHHHHHHHHHhc-----C--------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH
Confidence 45689999888877766532 0 1136899999999999999999998754 24566777765
Q ss_pred CccccCCCCccccCCCccccccccccchhhhHHHHHH-HhCCceEEEEcccccccC--------HHHHHHHhhhhcCCeE
Q 001355 764 SEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEF-RSKPYSVVFLEDLDKAAD--------PIVQSSLTKAISTGKF 834 (1093)
Q Consensus 764 ~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal-~~~p~~VI~LDEVDkiad--------~~vq~~Ll~aLe~Gr~ 834 (1093)
..... ..+.|.. ......+...+ +.....||||||+|. +. ..+++.|..+++.+
T Consensus 88 ~~~~~---------~~~~~~~-----~~~~~~~~~~~~~~~~~~vl~iDe~~~-l~~~~~~~~~~~~~~~l~~~~~~~-- 150 (195)
T 1jbk_A 88 ALVAG---------AKYRGEF-----EERLKGVLNDLAKQEGNVILFIDELHT-MVGAGKADGAMDAGNMLKPALARG-- 150 (195)
T ss_dssp HHHTT---------TCSHHHH-----HHHHHHHHHHHHHSTTTEEEEEETGGG-GTT------CCCCHHHHHHHHHTT--
T ss_pred HHhcc---------CCccccH-----HHHHHHHHHHHhhcCCCeEEEEeCHHH-HhccCcccchHHHHHHHHHhhccC--
Confidence 42110 0010100 01122233323 334456999999999 74 44577788877653
Q ss_pred ecCCCeEeecCCcEEEEecCC
Q 001355 835 TDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 835 ~d~~G~~V~l~naI~IlTSN~ 855 (1093)
+.++|+++|.
T Consensus 151 -----------~~~~i~~~~~ 160 (195)
T 1jbk_A 151 -----------ELHCVGATTL 160 (195)
T ss_dssp -----------SCCEEEEECH
T ss_pred -----------CeEEEEeCCH
Confidence 3457888773
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.58 E-value=1.2e-08 Score=128.41 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=84.5
Q ss_pred CCchhhHHHHHHHhhc---ccc-------cCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechh
Q 001355 209 DDVDENCRRIGEVLAG---RDE-------KKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEI 275 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R---~~~-------~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~ 275 (1093)
+|.++.++++.+.+.. .++ +.+++.+|+|.+|.| .++.++..+ +..++.++ .
T Consensus 207 ~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l-------------~~~~i~v~--~ 271 (806)
T 1ypw_A 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-------------GAFFFLIN--G 271 (806)
T ss_dssp CSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT-------------TCEEEEEE--H
T ss_pred CChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc-------------CCcEEEEE--c
Confidence 4667777777666541 111 346789999999998 355554432 34567777 5
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCc--chHHHHHHHHHHhhhcC-CCCCcEEEEEec
Q 001355 276 NEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVS--TEAARFVVSQLTSLLKS-GNGEKLWLIGAA 352 (1093)
Q Consensus 276 ~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~--~~~~~~~v~el~~Ll~~-~~~g~lwliG~a 352 (1093)
..++ ..+.++++.+++.+-..... ..+.|||+||++.+.+.... ......++..+-.++.. ..+..+.+|+++
T Consensus 272 ~~l~--~~~~g~~~~~l~~vf~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~at 347 (806)
T 1ypw_A 272 PEIM--SKLAGESESNLRKAFEEAEK--NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp HHHS--SSSTTHHHHHHHHHHHHHHH--HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEEC
T ss_pred hHhh--hhhhhhHHHHHHHHHHHHHh--cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEeccc
Confidence 5552 45778999999998887764 45789999999999986432 33455666777777753 235678999873
No 88
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.57 E-value=2.6e-07 Score=115.52 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=78.0
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC-------CCceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN-------KGKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs-------~~~fv~id~s~ 764 (1093)
..++|+++.+..+...+.+. ....++|+||+|||||.+|++||..+... ...++.++++.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~-------------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~ 252 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR-------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS 252 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-------------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-
T ss_pred CCccCCHHHHHHHHHHHhcc-------------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH
Confidence 45899998888776655321 11368999999999999999999987442 22344455443
Q ss_pred ccccCCCCccccCCCccccccccccc--hhhhHHHHHHHhCCceEEEEccccccc---------CHHHHHHHhhhhcCCe
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGK--VLVDYIYQEFRSKPYSVVFLEDLDKAA---------DPIVQSSLTKAISTGK 833 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~--~~~~~l~eal~~~p~~VI~LDEVDkia---------d~~vq~~Ll~aLe~Gr 833 (1093)
... | ..|+|. .....+.+.+......||||||++. + ..+.++.|..++++|
T Consensus 253 l~~--------------~--~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~-l~~~~~~~~~~~~~~~~L~~~l~~~- 314 (758)
T 1r6b_X 253 LLA--------------G--TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHT-IIGAGAASGGQVDAANLIKPLLSSG- 314 (758)
T ss_dssp --C--------------C--CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTT-TTTSCCSSSCHHHHHHHHSSCSSSC-
T ss_pred Hhc--------------c--ccccchHHHHHHHHHHHHHhcCCeEEEEechHH-HhhcCCCCcchHHHHHHHHHHHhCC-
Confidence 210 0 012221 1223444555555668999999998 5 567788888888764
Q ss_pred EecCCCeEeecCCcEEEEecCC
Q 001355 834 FTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 834 ~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
+.++|.+||.
T Consensus 315 ------------~~~~I~at~~ 324 (758)
T 1r6b_X 315 ------------KIRVIGSTTY 324 (758)
T ss_dssp ------------CCEEEEEECH
T ss_pred ------------CeEEEEEeCc
Confidence 3457888773
No 89
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.55 E-value=6.1e-07 Score=96.75 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=44.4
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEE
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVV 808 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI 808 (1093)
++|+||+|+|||+++++|+..+ ...++.+++..... .+.+. +...+..+.+........++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~~~~-----------~~~~~-----~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVE-----------MFVGV-----GAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHH-----------SCTTH-----HHHHHHHHHHHHTTSSSEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHHHHH-----------HHhhH-----HHHHHHHHHHHHHhcCCeEE
Confidence 8999999999999999999887 35678777654211 01110 01112334444433345799
Q ss_pred EEccccc
Q 001355 809 FLEDLDK 815 (1093)
Q Consensus 809 ~LDEVDk 815 (1093)
|+||||.
T Consensus 113 ~~Deid~ 119 (254)
T 1ixz_A 113 FIDEIDA 119 (254)
T ss_dssp EEETHHH
T ss_pred Eehhhhh
Confidence 9999987
No 90
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.54 E-value=4.3e-07 Score=99.58 Aligned_cols=97 Identities=21% Similarity=0.257 Sum_probs=58.8
Q ss_pred cccCccHHHHHHHHHHHHHHHh-------cCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRI-------GNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rs-------g~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+.|+|+++++..+...+..... +...+ ..++|+||+|+|||+++++|+..+ ...++.+++..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~--------~gvll~Gp~GtGKTtl~~~i~~~~---~~~~i~~~~~~ 108 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIP--------KGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSD 108 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCC--------CEEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCC--------CeEEEECCCcChHHHHHHHHHHHc---CCCEEEecHHH
Confidence 4567777777666655543311 11111 128999999999999999999887 35678887654
Q ss_pred ccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccc
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDK 815 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDk 815 (1093)
... .+.+. ....+..+.+........++|+||||.
T Consensus 109 ~~~-----------~~~~~-----~~~~i~~~~~~~~~~~~~i~~iDeid~ 143 (278)
T 1iy2_A 109 FVE-----------MFVGV-----GAARVRDLFETAKRHAPCIVFIDEIDA 143 (278)
T ss_dssp HHH-----------STTTH-----HHHHHHHHHHHHHTSCSEEEEEETHHH
T ss_pred HHH-----------HHhhH-----HHHHHHHHHHHHHhcCCcEEehhhhHh
Confidence 211 00110 011123344444434457999999986
No 91
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.54 E-value=2.9e-07 Score=116.64 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=68.0
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhcc-------CCCceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFG-------NKGKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfg-------s~~~fv~id~s~ 764 (1093)
..++|+++.+..+...+.+. . + ..++|+||+|||||.+|+.||..+.. ....++.++++.
T Consensus 170 d~viGr~~~i~~l~~~l~~~----~----~-----~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 236 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR----T----K-----NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS 236 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS----S----C-----CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred cccCCcHHHHHHHHHHHhcC----C----C-----CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHH
Confidence 35899998888777765321 0 0 14799999999999999999998744 245678888765
Q ss_pred ccccCCCCccccCCCccccccccccc--hhhhHHHHHHHhC-CceEEEEcccccccC--------HHHHHHHhhhhcCCe
Q 001355 765 EQRVSQPNSIFDCQNIDFCDCKLRGK--VLVDYIYQEFRSK-PYSVVFLEDLDKAAD--------PIVQSSLTKAISTGK 833 (1093)
Q Consensus 765 ~~~~~~~~si~~~~~l~G~~~g~~g~--~~~~~l~eal~~~-p~~VI~LDEVDkiad--------~~vq~~Ll~aLe~Gr 833 (1093)
... | ..|+|. ..+..+...+... ...||||||++. +. .++++.|+.+++.|.
T Consensus 237 l~~--------------g--~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~-l~~~~~~~g~~~~~~~L~~~l~~~~ 299 (854)
T 1qvr_A 237 LLA--------------G--AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHT-VVGAGKAEGAVDAGNMLKPALARGE 299 (854)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHHHTTC
T ss_pred hhc--------------c--CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HhccCCccchHHHHHHHHHHHhCCC
Confidence 311 0 012221 1122333444433 457999999999 65 567788888887653
Q ss_pred EecCCCeEeecCCcEEEEecCC
Q 001355 834 FTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 834 ~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.++|++||.
T Consensus 300 -------------i~~I~at~~ 308 (854)
T 1qvr_A 300 -------------LRLIGATTL 308 (854)
T ss_dssp -------------CCEEEEECH
T ss_pred -------------eEEEEecCc
Confidence 347777773
No 92
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.46 E-value=5e-07 Score=113.03 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=67.8
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccC-------CCceEEeecCCc
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGN-------KGKLIHVDVSSE 765 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs-------~~~fv~id~s~~ 765 (1093)
.|+|+++.+..+...+.+. ....+||+||+|||||.+|++||+.+... +..++.+|++
T Consensus 181 ~iiG~~~~i~~l~~~l~~~-------------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g-- 245 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSRR-------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-- 245 (758)
T ss_dssp CCCCCHHHHHHHHHHHHCS-------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----
T ss_pred CccCchHHHHHHHHHHhCC-------------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc--
Confidence 4899999998887776431 01258999999999999999999988543 2334444441
Q ss_pred cccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecC
Q 001355 766 QRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSIS 845 (1093)
Q Consensus 766 ~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~ 845 (1093)
..+.|... ..+..+.+.+......||||| ...+.++.|+.+++.|
T Consensus 246 ------------~~~~G~~e-----~~l~~~~~~~~~~~~~iLfiD-----~~~~~~~~L~~~l~~~------------- 290 (758)
T 3pxi_A 246 ------------TKYRGEFE-----DRLKKVMDEIRQAGNIILFID-----AAIDASNILKPSLARG------------- 290 (758)
T ss_dssp -------------------C-----TTHHHHHHHHHTCCCCEEEEC-----C--------CCCTTSS-------------
T ss_pred ------------ccccchHH-----HHHHHHHHHHHhcCCEEEEEc-----CchhHHHHHHHHHhcC-------------
Confidence 11112111 122345555566667899999 2346889999999865
Q ss_pred CcEEEEecCC
Q 001355 846 GMIFVATSTI 855 (1093)
Q Consensus 846 naI~IlTSN~ 855 (1093)
+.++|.+||.
T Consensus 291 ~v~~I~at~~ 300 (758)
T 3pxi_A 291 ELQCIGATTL 300 (758)
T ss_dssp SCEEEEECCT
T ss_pred CEEEEeCCCh
Confidence 3458888884
No 93
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.29 E-value=2.8e-06 Score=93.53 Aligned_cols=68 Identities=21% Similarity=0.256 Sum_probs=45.4
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEE
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVV 808 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI 808 (1093)
++|+||+|+|||+++++||..+ ...++.++...... .+.|.. ...+..+....+.....|+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~~l~~-----------~~~~~~-----~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES---GLNFISVKGPELLN-----------MYVGES-----ERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT---TCEEEEEETTTTCS-----------STTHHH-----HHHHHHHHHHHHHTCSEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcHHHHh-----------hhhhHH-----HHHHHHHHHHHHhcCCCeE
Confidence 9999999999999999999876 34678887654211 111110 1123444444444455899
Q ss_pred EEccccc
Q 001355 809 FLEDLDK 815 (1093)
Q Consensus 809 ~LDEVDk 815 (1093)
|+||||.
T Consensus 108 ~~Deid~ 114 (274)
T 2x8a_A 108 FFDEVDA 114 (274)
T ss_dssp EEETCTT
T ss_pred eeehhhh
Confidence 9999998
No 94
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.26 E-value=1.1e-06 Score=100.82 Aligned_cols=146 Identities=12% Similarity=0.137 Sum_probs=83.6
Q ss_pred cccCccHHHHHHHHHHH-HHHHhcCCCCCCCCCCCCeEEEe--eCCCCChHHHHHHHHHHHhccC------CCceEEeec
Q 001355 692 EKVGWQDEAICTISQAV-SRWRIGNGRDVGSNSKRGIWLAF--LGPDKVGKKKIASALAEIVFGN------KGKLIHVDV 762 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI-~~~rsg~~~~~~~~~k~~~~LLf--~Gp~GvGKT~lAraLA~~lfgs------~~~fv~id~ 762 (1093)
..++|+++.+..|...+ ..+..+... ....+++ +||+|+|||.+++.+++.+... ...+++++|
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~-------~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGL-------SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCB-------CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCC-------CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 56899999999998888 766543110 1136788 9999999999999999876431 345677887
Q ss_pred CCccccCC-CCccccCCCcccccccccc---chhhhHHHHHHHh-CCceEEEEcccccccC------HHHHHHHhhhhcC
Q 001355 763 SSEQRVSQ-PNSIFDCQNIDFCDCKLRG---KVLVDYIYQEFRS-KPYSVVFLEDLDKAAD------PIVQSSLTKAIST 831 (1093)
Q Consensus 763 s~~~~~~~-~~si~~~~~l~G~~~g~~g---~~~~~~l~eal~~-~p~~VI~LDEVDkiad------~~vq~~Ll~aLe~ 831 (1093)
........ ...+. ..+|......+ ......+...+.. ....||+|||++. ++ ..++..|++.+++
T Consensus 95 ~~~~~~~~~~~~l~---~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~-l~~~~~~~~~~l~~l~~~~~~ 170 (412)
T 1w5s_A 95 FNAPNLYTILSLIV---RQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQS-MLSSPRIAAEDLYTLLRVHEE 170 (412)
T ss_dssp GGCCSHHHHHHHHH---HHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHH-HHSCTTSCHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHH---HHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHH-HhhccCcchHHHHHHHHHHHh
Confidence 53211000 00000 00011100011 1223444445542 3356999999999 64 4777777777764
Q ss_pred CeEecCCCeEeecCCcEEEEecC
Q 001355 832 GKFTDSYGRDVSISGMIFVATST 854 (1093)
Q Consensus 832 Gr~~d~~G~~V~l~naI~IlTSN 854 (1093)
.... +. -.+..||+|++
T Consensus 171 ~~~~---~~---~~~v~lI~~~~ 187 (412)
T 1w5s_A 171 IPSR---DG---VNRIGFLLVAS 187 (412)
T ss_dssp SCCT---TS---CCBEEEEEEEE
T ss_pred cccC---CC---CceEEEEEEec
Confidence 2100 00 13456787776
No 95
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.10 E-value=3.9e-06 Score=105.61 Aligned_cols=136 Identities=17% Similarity=0.149 Sum_probs=84.7
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQP 771 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~ 771 (1093)
+.|+|+++++..|.+.+.........-..-..+.+-.++|+||+|||||++|++||..+ ...|+.+++.....
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~i~v~~~~l~~---- 276 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS---- 276 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEEEEEEHHHHSS----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcEEEEEchHhhh----
Confidence 45899999999988888753221100000001223469999999999999999999876 56788888764211
Q ss_pred CccccCCCccccccccccchhhhHHHHHHHhCCceEEEEccccccc----------CHHHHHHHhhhhcCCeEecCCCeE
Q 001355 772 NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVVFLEDLDKAA----------DPIVQSSLTKAISTGKFTDSYGRD 841 (1093)
Q Consensus 772 ~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI~LDEVDkia----------d~~vq~~Ll~aLe~Gr~~d~~G~~ 841 (1093)
.+.|... ..+..+.+.......+++|||||+.++ ...++..|+..++.-+
T Consensus 277 -------~~~g~~~-----~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-------- 336 (806)
T 1ypw_A 277 -------KLAGESE-----SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 336 (806)
T ss_dssp -------SSTTHHH-----HHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC--------
T ss_pred -------hhhhhHH-----HHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc--------
Confidence 1111111 112333333344445899999998633 2457778888887322
Q ss_pred eecCCcEEEEecCC
Q 001355 842 VSISGMIFVATSTI 855 (1093)
Q Consensus 842 V~l~naI~IlTSN~ 855 (1093)
...+.++|++||.
T Consensus 337 -~~~~v~vI~atn~ 349 (806)
T 1ypw_A 337 -QRAHVIVMAATNR 349 (806)
T ss_dssp -TTSCCEEEEECSC
T ss_pred -ccccEEEecccCC
Confidence 1136778888886
No 96
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.01 E-value=5.8e-06 Score=84.31 Aligned_cols=101 Identities=15% Similarity=0.086 Sum_probs=61.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc-cCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF-GNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf-gs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
-.++|+||+|+|||+++++|+..+. .....++.+++....... ...+. .+ ....+...+.+ .
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~--------~~~~~--~~-----~~~~~~~~~~~--~ 101 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL--------KHLMD--EG-----KDTKFLKTVLN--S 101 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH--------HHHHH--HT-----CCSHHHHHHHT--C
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--------HHHhc--Cc-----hHHHHHHHhcC--C
Confidence 3699999999999999999999885 333344555544321000 00000 00 00122333332 3
Q ss_pred eEEEEcccc--cccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 806 SVVFLEDLD--KAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 806 ~VI~LDEVD--kiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
.+|+|||++ . .++..+..|.++++.-. -.+..+|+|||.
T Consensus 102 ~llilDE~~~~~-~~~~~~~~l~~ll~~~~----------~~~~~ii~tsn~ 142 (180)
T 3ec2_A 102 PVLVLDDLGSER-LSDWQRELISYIITYRY----------NNLKSTIITTNY 142 (180)
T ss_dssp SEEEEETCSSSC-CCHHHHHHHHHHHHHHH----------HTTCEEEEECCC
T ss_pred CEEEEeCCCCCc-CCHHHHHHHHHHHHHHH----------HcCCCEEEEcCC
Confidence 599999998 6 78888888888886311 023457889996
No 97
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.96 E-value=4.4e-06 Score=86.61 Aligned_cols=38 Identities=24% Similarity=0.145 Sum_probs=32.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.+++|+||+|+|||++|++|+..+.....+++.+++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 36999999999999999999998876667777787764
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.61 E-value=1.3e-05 Score=89.62 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=31.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc-cCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF-GNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf-gs~~~fv~id~s~ 764 (1093)
..++|+||+|+|||.+|++||..+. ....+++.+++..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~ 191 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPS 191 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHH
Confidence 3699999999999999999999887 6666677777653
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.60 E-value=0.00023 Score=98.76 Aligned_cols=118 Identities=13% Similarity=0.108 Sum_probs=68.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
++||+||||||||.+|+.+.... ....++.++++....... +. ..+....+... ...+.+.+........|
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~--~~~~~~~infsa~ts~~~---~~---~~i~~~~~~~~-~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNS--SLYDVVGINFSKDTTTEH---IL---SALHRHTNYVT-TSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC--SSCEEEEEECCTTCCHHH---HH---HHHHHHBCCEE-ETTTEEEEEBSSSSCEE
T ss_pred eEEEECCCCCCHHHHHHHHHhcC--CCCceEEEEeecCCCHHH---HH---HHHHHHhhhcc-ccCCccccCCCCCceEE
Confidence 69999999999999996554433 234567778775432100 00 00000000000 00000000000112359
Q ss_pred EEEcccccccCH------HHHHHHhhhhcCCeEecCC-CeEeecCCcEEEEecCC
Q 001355 808 VFLEDLDKAADP------IVQSSLTKAISTGKFTDSY-GRDVSISGMIFVATSTI 855 (1093)
Q Consensus 808 I~LDEVDkiad~------~vq~~Ll~aLe~Gr~~d~~-G~~V~l~naI~IlTSN~ 855 (1093)
|||||++. ... .....|.+.+|.|.+.+.. +..+.+.+..||+++|.
T Consensus 1340 lFiDEinm-p~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Np 1393 (2695)
T 4akg_A 1340 LFCDEINL-PKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNP 1393 (2695)
T ss_dssp EEEETTTC-SCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECC
T ss_pred EEeccccc-ccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCC
Confidence 99999876 433 4888999999998887743 45566688999999996
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.56 E-value=9.5e-05 Score=73.87 Aligned_cols=87 Identities=11% Similarity=0.105 Sum_probs=57.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
+++|+||+|+|||+++++|+..+.......++++...... . . +..+ ..|
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~----------~-------~-------------~~~~-~~l 86 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPL----------T-------D-------------AAFE-AEY 86 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCC----------C-------G-------------GGGG-CSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhH----------H-------H-------------HHhC-CCE
Confidence 6899999999999999999998765444456665543210 0 0 0112 369
Q ss_pred EEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecCC
Q 001355 808 VFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 808 I~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN~ 855 (1093)
|+|||++. ++...+..|.++|+.-. . -+..++|+|||.
T Consensus 87 LilDE~~~-~~~~~~~~l~~li~~~~--~-------~g~~~iiits~~ 124 (149)
T 2kjq_A 87 LAVDQVEK-LGNEEQALLFSIFNRFR--N-------SGKGFLLLGSEY 124 (149)
T ss_dssp EEEESTTC-CCSHHHHHHHHHHHHHH--H-------HTCCEEEEEESS
T ss_pred EEEeCccc-cChHHHHHHHHHHHHHH--H-------cCCcEEEEECCC
Confidence 99999999 76655888888886311 1 112336778885
No 101
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.15 E-value=0.0013 Score=91.63 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=73.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
..++.||+|||||++++.||+.+ +..++.++|+...+. ......+.++... +..
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~l---g~~~v~~nc~e~ld~---------------------~~lg~~~~g~~~~--Gaw 700 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNL---GRVVVVFNCDDSFDY---------------------QVLSRLLVGITQI--GAW 700 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT---TCCCEEEETTSSCCH---------------------HHHHHHHHHHHHH--TCE
T ss_pred CCcccCCCCCCcHHHHHHHHHHh---CCcEEEEECCCCCCh---------------------hHhhHHHHHHHhc--CCE
Confidence 47899999999999999999998 678999999863210 0122345555554 469
Q ss_pred EEEcccccccCHHHHHHH-------hhhhcCCeE-ecCCCeEeecC-CcEEEEecCCCC
Q 001355 808 VFLEDLDKAADPIVQSSL-------TKAISTGKF-TDSYGRDVSIS-GMIFVATSTILK 857 (1093)
Q Consensus 808 I~LDEVDkiad~~vq~~L-------l~aLe~Gr~-~d~~G~~V~l~-naI~IlTSN~~~ 857 (1093)
++||||++ ++++++..| ..++.++.. ....|.++.+. +..|++|.|.|.
T Consensus 701 ~~~DE~nr-~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy 758 (2695)
T 4akg_A 701 GCFDEFNR-LDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGY 758 (2695)
T ss_dssp EEEETTTS-SCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCS
T ss_pred eeehhhhh-cChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCc
Confidence 99999999 999999988 555555541 22346666654 456788889754
No 102
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.14 E-value=0.00054 Score=72.27 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=23.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
.++|+||+|+|||++|.+||+.+.|
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5999999999999999999999854
No 103
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.03 E-value=0.004 Score=69.97 Aligned_cols=91 Identities=8% Similarity=0.097 Sum_probs=58.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCC-CceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHH----h
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNK-GKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFR----S 802 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~-~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~----~ 802 (1093)
.++|+||+|.||+..++.|++.+.... .++..+..... .-.+.+.+.+. -
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~~~plf 74 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-------------------------TDWNAIFSLCQAMSLF 74 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-------------------------CCHHHHHHHHHHHHHC
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-------------------------CCHHHHHHHhcCcCCc
Confidence 699999999999999999999875322 12111111100 00123333332 2
Q ss_pred CCceEEEEcccccccCHHHHHHHhhhhcCCeEecCCCeEeecCCcEEEEecC
Q 001355 803 KPYSVVFLEDLDKAADPIVQSSLTKAISTGKFTDSYGRDVSISGMIFVATST 854 (1093)
Q Consensus 803 ~p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr~~d~~G~~V~l~naI~IlTSN 854 (1093)
.++.||+|||++.-++...++.|++++++- -.+++||++++
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p-----------~~~~~~il~~~ 115 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLL-----------HDDLLLIVRGN 115 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTC-----------BTTEEEEEEES
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcC-----------CCCeEEEEEcC
Confidence 356799999997425678999999999852 13566777765
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.96 E-value=0.0003 Score=98.34 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=71.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
++||+||+|||||.++......+. ...++.++++...... .+. +.+.....++.....+.+..+.......|
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~--~~~~~~infS~~Tta~---~l~---~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFP--DFEVVSLNFSSATTPE---LLL---KTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCT--TEEEEEECCCTTCCHH---HHH---HHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHhCC--CCceEEEEeeCCCCHH---HHH---HHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 489999999999977654333332 3457788888644211 010 00000000000000001111111122459
Q ss_pred EEEcccccccCH------HHHHHHhhhhcCCeEecC-CCeEeecCCcEEEEecCC
Q 001355 808 VFLEDLDKAADP------IVQSSLTKAISTGKFTDS-YGRDVSISGMIFVATSTI 855 (1093)
Q Consensus 808 I~LDEVDkiad~------~vq~~Ll~aLe~Gr~~d~-~G~~V~l~naI~IlTSN~ 855 (1093)
|||||+.. ... .+...|.++||.|.+.+. ++..+.+.+..||+|+|.
T Consensus 1378 lFiDDiNm-p~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnP 1431 (3245)
T 3vkg_A 1378 VFCDEINL-PSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNP 1431 (3245)
T ss_dssp EEETTTTC-CCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECC
T ss_pred EEecccCC-CCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCC
Confidence 99999987 764 488999999999998885 356677789999999996
No 105
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.78 E-value=0.0027 Score=70.40 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=41.4
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
..++|.++.+..|...+.. + ..++++||.|+|||.+++.+++.. + .+++++..
T Consensus 12 ~~~~gR~~el~~L~~~l~~---~------------~~v~i~G~~G~GKT~Ll~~~~~~~-~----~~~~~~~~ 64 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN---Y------------PLTLLLGIRRVGKSSLLRAFLNER-P----GILIDCRE 64 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH---C------------SEEEEECCTTSSHHHHHHHHHHHS-S----EEEEEHHH
T ss_pred HhcCChHHHHHHHHHHHhc---C------------CeEEEECCCcCCHHHHHHHHHHHc-C----cEEEEeec
Confidence 4578999888888777653 1 158999999999999999999875 2 67787754
No 106
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.71 E-value=0.0025 Score=69.75 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|+||+|||||.+|++||..+
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhh
Confidence 59999999999999999999863
No 107
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=96.62 E-value=0.0031 Score=62.43 Aligned_cols=65 Identities=8% Similarity=0.033 Sum_probs=55.4
Q ss_pred hhhhcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhccCCCCchhhHHHHHHHHHH
Q 001355 8 ARQCLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQSYSVSPKLQFRALELCLGV 79 (1093)
Q Consensus 8 ~~q~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~~~~s~~lq~~aLel~~~~ 79 (1093)
.+..||+.+..+|+.|...|+++||.+|++.|++.||+..+.+...+++.+.+.+ ..+|+..+..
T Consensus 78 ~~~~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~-------~~~l~~~l~~ 142 (146)
T 3fh2_A 78 GHIPFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGAD-------LPRVRQQVIQ 142 (146)
T ss_dssp SCCCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHHTCC-------HHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHcCCC-------HHHHHHHHHH
Confidence 3567999999999999999999999999999999999999999999999988843 3455554443
No 108
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.61 E-value=0.0045 Score=68.67 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=39.4
Q ss_pred cccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 692 EKVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 692 e~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
..++|.++.+..|.. +.. + .++++||.|+|||.+++.+++.+- ..++.+++..
T Consensus 13 ~~~~gR~~el~~L~~-l~~-------~---------~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~ 65 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-------P---------ITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRK 65 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-------S---------EEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred HHhcChHHHHHHHHH-hcC-------C---------cEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEchh
Confidence 457888877766655 321 1 589999999999999999998762 3467788765
No 109
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=96.57 E-value=0.0031 Score=62.50 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=49.9
Q ss_pred hhhhcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhcc
Q 001355 8 ARQCLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQS 61 (1093)
Q Consensus 8 ~~q~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~ 61 (1093)
.+..||+.+..+|+.|...|+++||.+|++.|++.|||..+.+...+++.+.+.
T Consensus 78 ~~~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~~gv 131 (145)
T 3fes_A 78 EDIVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGV 131 (145)
T ss_dssp SCCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHHcCC
Confidence 346799999999999999999999999999999999999999988888888873
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.48 E-value=0.0068 Score=85.15 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=71.8
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceEE
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSVV 808 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~VI 808 (1093)
....||+|||||++++.||+.+ +..++.++|+..-+ | ......+.+++.. +.-.
T Consensus 607 g~~~GPaGtGKTet~k~La~~l---gr~~~vfnC~~~~d-------------------~--~~~g~i~~G~~~~--GaW~ 660 (3245)
T 3vkg_A 607 GNPFGPAGTGKTETVKALGSQL---GRFVLVFCCDEGFD-------------------L--QAMSRIFVGLCQC--GAWG 660 (3245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT---TCCEEEEECSSCCC-------------------H--HHHHHHHHHHHHH--TCEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHh---CCeEEEEeCCCCCC-------------------H--HHHHHHHhhHhhc--CcEE
Confidence 4688999999999999999998 57788899985211 0 0112345555543 5688
Q ss_pred EEcccccccCHHHHHHHhhhhc---------CCeEecCCCeEeecCC-cEEEEecCCCC
Q 001355 809 FLEDLDKAADPIVQSSLTKAIS---------TGKFTDSYGRDVSISG-MIFVATSTILK 857 (1093)
Q Consensus 809 ~LDEVDkiad~~vq~~Ll~aLe---------~Gr~~d~~G~~V~l~n-aI~IlTSN~~~ 857 (1093)
+||||.+ ++.+++..+.+.|. ..++.-..|+++.+.. ..|++|.|.|+
T Consensus 661 cfDEfNr-l~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY 718 (3245)
T 3vkg_A 661 CFDEFNR-LEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGY 718 (3245)
T ss_dssp EEETTTS-SCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCG
T ss_pred Eehhhhc-CCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCc
Confidence 9999999 99999998887665 3454443366676654 66788899764
No 111
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.21 E-value=0.014 Score=64.10 Aligned_cols=135 Identities=16% Similarity=0.117 Sum_probs=84.0
Q ss_pred cCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCC
Q 001355 228 KKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSG 304 (1093)
Q Consensus 228 ~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~ 304 (1093)
+...|.+|.|.+|+| .++.++..+... + .+.+..++.++ ...++. .+-++.+.++.++.....
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~--~----~~~~~~~~~~~--~~~l~~--~~~g~~~~~~~~~~~~~~---- 130 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRL--G----YVRKGHLVSVT--RDDLVG--QYIGHTAPKTKEVLKRAM---- 130 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHT--T----SSSSCCEEEEC--GGGTCC--SSTTCHHHHHHHHHHHHT----
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhc--C----CcCCCcEEEEc--HHHhhh--hcccccHHHHHHHHHhcC----
Confidence 345578999999998 477788777553 2 13345677777 555532 233444555555544332
Q ss_pred CcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEEEecccHHHHHhhhhcCCCCCCCCcceeeecc
Q 001355 305 PGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDLQLLPIH 380 (1093)
Q Consensus 305 ~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~Lq~v~i~ 380 (1093)
+-||||||++.+.........-..+...|-+++. ..++.+.+|++ ++...+..+...+|+|-++++ +.+.++
T Consensus 131 -~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~-~~~~~~~~i~~-~~~~~~~~~~~~~~~l~~R~~-~~i~~~ 202 (309)
T 3syl_A 131 -GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NNRDDLVVILA-GYADRMENFFQSNPGFRSRIA-HHIEFP 202 (309)
T ss_dssp -TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHH-HCTTTCEEEEE-ECHHHHHHHHHHSTTHHHHEE-EEEEEC
T ss_pred -CCEEEEEChhhhccCCCcccccHHHHHHHHHHHh-cCCCCEEEEEe-CChHHHHHHHhhCHHHHHhCC-eEEEcC
Confidence 3499999999998654321122334455666665 23467899998 477666677777899988875 344444
No 112
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.16 E-value=0.0039 Score=64.28 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=49.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
..+++||+|+|||+++..++....+...+.+.+....... .....+. ...|.............+.+.+. .+..+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r-~~~~~i~---s~~g~~~~~~~~~~~~~~~~~~~-~~~dv 79 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSR-YHSTMIV---SHSGNGVEAHVIERPEEMRKYIE-EDTRG 79 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEEC---C----CEECEEESSGGGGGGGCC-TTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccc-cCcccEE---ecCCCceeeEEECCHHHHHHHhc-CCCCE
Confidence 5789999999999998666655444444433332221000 0000000 00011000000001112222222 24679
Q ss_pred EEEcccccccCHHHHHHHhhhhcC
Q 001355 808 VFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 808 I~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
|+|||+.. ++++....|..+.+.
T Consensus 80 viIDE~Q~-~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 80 VFIDEVQF-FNPSLFEVVKDLLDR 102 (184)
T ss_dssp EEECCGGG-SCTTHHHHHHHHHHT
T ss_pred EEEECccc-CCHHHHHHHHHHHHC
Confidence 99999999 988888888777775
No 113
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.11 E-value=0.011 Score=66.59 Aligned_cols=69 Identities=25% Similarity=0.354 Sum_probs=43.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
.++|+||+|+|||.+|..++.. .|....|+.+...+. . + .+. .+ .......+.+.+.+.+ +
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~~~eE~---v---~-----~~~---~~--le~~l~~i~~~l~~~~--L 185 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA-LGGKDKYATVRFGEP---L---S-----GYN---TD--FNVFVDDIARAMLQHR--V 185 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH-HHTTSCCEEEEBSCS---S---T-----TCB---CC--HHHHHHHHHHHHHHCS--E
T ss_pred EEEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEecchhh---h---h-----hhh---cC--HHHHHHHHHHHHhhCC--E
Confidence 5789999999999999999987 344444655532221 0 0 000 00 1123445666676655 9
Q ss_pred EEEccccc
Q 001355 808 VFLEDLDK 815 (1093)
Q Consensus 808 I~LDEVDk 815 (1093)
||||+|+.
T Consensus 186 LVIDsI~a 193 (331)
T 2vhj_A 186 IVIDSLKN 193 (331)
T ss_dssp EEEECCTT
T ss_pred EEEecccc
Confidence 99999997
No 114
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.10 E-value=0.012 Score=68.99 Aligned_cols=115 Identities=12% Similarity=0.133 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCCC-ceEEeecCCcc-cc-----
Q 001355 696 WQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNKG-KLIHVDVSSEQ-RV----- 768 (1093)
Q Consensus 696 GQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~-~fv~id~s~~~-~~----- 768 (1093)
+|.+++..+...|... ...+++.|++|||||+++.+++..+..... ..+.+..+... ..
T Consensus 29 ~Q~~av~~~~~~i~~~--------------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEK--------------KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp HHHHHHHHHHHHHHSS--------------SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--------------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 6777777766655421 126999999999999999999988865544 33333222100 00
Q ss_pred -CCCCccccCCCcccccccccc--chhhhHHHHHHHhCCceEEEEcccccccCHHHHHHHhhhhc
Q 001355 769 -SQPNSIFDCQNIDFCDCKLRG--KVLVDYIYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAIS 830 (1093)
Q Consensus 769 -~~~~si~~~~~l~G~~~g~~g--~~~~~~l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe 830 (1093)
.....+ ..+++......+ ..+.. ..........+|++||+.. ++...+..|++.+.
T Consensus 95 ~~~~~T~---h~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~iiiDE~~~-~~~~~~~~l~~~~~ 153 (459)
T 3upu_A 95 GKEASTI---HSILKINPVTYEENVLFEQ--KEVPDLAKCRVLICDEVSM-YDRKLFKILLSTIP 153 (459)
T ss_dssp SSCEEEH---HHHHTEEEEECSSCEEEEE--CSCCCCSSCSEEEESCGGG-CCHHHHHHHHHHSC
T ss_pred ccchhhH---HHHhccCcccccccchhcc--cccccccCCCEEEEECchh-CCHHHHHHHHHhcc
Confidence 000000 000000000000 00000 0000112456999999999 99999999999886
No 115
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.95 E-value=0.027 Score=60.03 Aligned_cols=98 Identities=12% Similarity=-0.064 Sum_probs=54.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHh----
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRS---- 802 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~---- 802 (1093)
..++++|++|+|||+++..++...-+.....+.+....... . ...+.. .+|....-........+.+.+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~-~~~i~s---rlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-S-IRNIQS---RTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-G-CSSCCC---CCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-H-HHHHHH---hcCCCccccccCCHHHHHHHHHHHhhC
Confidence 56888999999999999887776655555555553222111 1 011110 01111000000112345555554
Q ss_pred CCceEEEEcccccccCHHHHHHHhhhhc
Q 001355 803 KPYSVVFLEDLDKAADPIVQSSLTKAIS 830 (1093)
Q Consensus 803 ~p~~VI~LDEVDkiad~~vq~~Ll~aLe 830 (1093)
.+..+|+|||+.. ++.+....+..+.+
T Consensus 88 ~~~dvViIDEaQ~-l~~~~ve~l~~L~~ 114 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDRICEVANILAE 114 (223)
T ss_dssp TTCCEEEECSGGG-SCTHHHHHHHHHHH
T ss_pred CCCCEEEEecCcc-CcHHHHHHHHHHHh
Confidence 3467999999999 88776555544444
No 116
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.72 E-value=0.029 Score=63.92 Aligned_cols=96 Identities=11% Similarity=0.167 Sum_probs=59.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccC-CCceEEeec-CCccccCCCCccccCCCcc-ccccccccchhhhHHHHHHHhC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGN-KGKLIHVDV-SSEQRVSQPNSIFDCQNID-FCDCKLRGKVLVDYIYQEFRSK 803 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs-~~~fv~id~-s~~~~~~~~~si~~~~~l~-G~~~g~~g~~~~~~l~eal~~~ 803 (1093)
..+++.||+|+|||++.++|+..+... ...++.+.- -.+. ..+. ..++ ....+....++.+.+..+++.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~---~~~~----~~~v~q~~~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV---HESK----KCLVNQREVHRDTLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---CCCS----SSEEEEEEBTTTBSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh---hhcc----ccceeeeeeccccCCHHHHHHHHhhhC
Confidence 369999999999999999999877543 333333221 1111 0000 0011 0111112234556788888887
Q ss_pred CceEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 804 PYSVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 804 p~~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
| .||++||+- |.+....++++.++|.
T Consensus 197 P-dvillDEp~---d~e~~~~~~~~~~~G~ 222 (356)
T 3jvv_A 197 P-DIILVGEMR---DLETIRLALTAAETGH 222 (356)
T ss_dssp C-SEEEESCCC---SHHHHHHHHHHHHTTC
T ss_pred c-CEEecCCCC---CHHHHHHHHHHHhcCC
Confidence 7 699999985 4777888888877653
No 117
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.70 E-value=0.019 Score=65.68 Aligned_cols=141 Identities=9% Similarity=0.064 Sum_probs=82.2
Q ss_pred CCchhhHHHHHHHhhc---------ccccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhh
Q 001355 209 DDVDENCRRIGEVLAG---------RDEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEIN 276 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R---------~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~ 276 (1093)
+|.++.++++.+.+.. +-....++.+|.|++|+| .++.++.. .+..|+.+. .+
T Consensus 118 iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~-------------~~~~~~~v~--~~ 182 (389)
T 3vfd_A 118 AGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE-------------SNATFFNIS--AA 182 (389)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH-------------TTCEEEEEC--SC
T ss_pred CCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh-------------hcCcEEEee--HH
Confidence 4677777777777631 001335789999999998 46666655 245788877 55
Q ss_pred hhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCc--chHHHHHHHHHHhhhcC---CCCCcEEEEEe
Q 001355 277 EFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVS--TEAARFVVSQLTSLLKS---GNGEKLWLIGA 351 (1093)
Q Consensus 277 ~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~--~~~~~~~v~el~~Ll~~---~~~g~lwliG~ 351 (1093)
.+. ..+.++.+..++.+...... ..+.||||||++-+...... ......+..++-..+.. ....++.+||+
T Consensus 183 ~l~--~~~~g~~~~~~~~~~~~a~~--~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 258 (389)
T 3vfd_A 183 SLT--SKYVGEGEKLVRALFAVARE--LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGA 258 (389)
T ss_dssp CC---------CHHHHHHHHHHHHH--SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEE
T ss_pred Hhh--ccccchHHHHHHHHHHHHHh--cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEe
Confidence 552 34677888888888777764 34679999999999765421 22344444455444431 12457999998
Q ss_pred cccHHHHHhhhhcCCCCCCCCcc
Q 001355 352 AMSYETYLKMLAKFPGLDNDWDL 374 (1093)
Q Consensus 352 a~T~~tY~k~~~~~PslE~~w~L 374 (1093)
+ +.. ..-+|++-++|+.
T Consensus 259 t-n~~-----~~l~~~l~~R~~~ 275 (389)
T 3vfd_A 259 T-NRP-----QELDEAVLRRFIK 275 (389)
T ss_dssp E-SCG-----GGCCHHHHTTCCE
T ss_pred c-CCc-----hhcCHHHHcCcce
Confidence 4 432 1346777777753
No 118
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.51 E-value=0.091 Score=59.48 Aligned_cols=140 Identities=14% Similarity=0.103 Sum_probs=89.2
Q ss_pred CCchhhHHHHHHHhhc---c------cccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhh
Q 001355 209 DDVDENCRRIGEVLAG---R------DEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEIN 276 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R---~------~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~ 276 (1093)
+|.++.++.+.+.+.+ + -.+..++.+|.|++|.| .++.++... +..++.+. .+
T Consensus 87 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-------------~~~~~~i~--~~ 151 (357)
T 3d8b_A 87 AGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS-------------GATFFSIS--AS 151 (357)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT-------------TCEEEEEE--GG
T ss_pred CChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc-------------CCeEEEEe--hH
Confidence 4677777777776641 0 01346788999999998 366666552 45678887 66
Q ss_pred hhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCC--cchHHHHHHHHHHhhhcCC---CCCcEEEEEe
Q 001355 277 EFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSV--STEAARFVVSQLTSLLKSG---NGEKLWLIGA 351 (1093)
Q Consensus 277 ~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~--~~~~~~~~v~el~~Ll~~~---~~g~lwliG~ 351 (1093)
.+. ..+.++.+..++.+...... ..+.||||||++.+..... .......++.++-..+... ..+++.+||+
T Consensus 152 ~l~--~~~~g~~~~~~~~~~~~a~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~a 227 (357)
T 3d8b_A 152 SLT--SKWVGEGEKMVRALFAVARC--QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGA 227 (357)
T ss_dssp GGC--CSSTTHHHHHHHHHHHHHHH--TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEE
T ss_pred Hhh--ccccchHHHHHHHHHHHHHh--cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEe
Confidence 663 34677888888888776664 4578999999999987532 1234444555554544311 2457999998
Q ss_pred cccHHHHHhhhhcCCCCCCCCc
Q 001355 352 AMSYETYLKMLAKFPGLDNDWD 373 (1093)
Q Consensus 352 a~T~~tY~k~~~~~PslE~~w~ 373 (1093)
| +.. ..-+|++-++++
T Consensus 228 t-n~~-----~~l~~~l~~Rf~ 243 (357)
T 3d8b_A 228 T-NRP-----QEIDEAARRRLV 243 (357)
T ss_dssp E-SCG-----GGBCHHHHTTCC
T ss_pred c-CCh-----hhCCHHHHhhCc
Confidence 4 432 134566666665
No 119
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.35 E-value=0.048 Score=55.77 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=21.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+.|.||+|+|||++.+.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999877
No 120
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.31 E-value=0.059 Score=58.61 Aligned_cols=96 Identities=21% Similarity=0.285 Sum_probs=52.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccC-CCceEEeecCCccccCCC-CccccCCCccccccccccchhhhHHHHHHHhCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGN-KGKLIHVDVSSEQRVSQP-NSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKP 804 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs-~~~fv~id~s~~~~~~~~-~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p 804 (1093)
..+++.||+|+|||++.+.|+..+... ...++..+ ......... ..+. .+..+|.. ...+...+..++..+|
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g-~~i~~~~~~~~~~v-~q~~~gl~----~~~l~~~la~aL~~~p 99 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE-DPIEYVFKHKKSIV-NQREVGED----TKSFADALRAALREDP 99 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSCCCCSSSEE-EEEEBTTT----BSCHHHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC-CcceeecCCcceee-eHHHhCCC----HHHHHHHHHHHHhhCC
Confidence 479999999999999999999877432 23322222 110000000 0000 00111111 1234456788888876
Q ss_pred ceEEEEcccccccCHHHHHHHhhhhcCC
Q 001355 805 YSVVFLEDLDKAADPIVQSSLTKAISTG 832 (1093)
Q Consensus 805 ~~VI~LDEVDkiad~~vq~~Ll~aLe~G 832 (1093)
.+|++||.- |++....++++.++|
T Consensus 100 -~illlDEp~---D~~~~~~~l~~~~~g 123 (261)
T 2eyu_A 100 -DVIFVGEMR---DLETVETALRAAETG 123 (261)
T ss_dssp -SEEEESCCC---SHHHHHHHHHHHHTT
T ss_pred -CEEEeCCCC---CHHHHHHHHHHHccC
Confidence 699999984 344444445544433
No 121
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.18 E-value=0.023 Score=60.68 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=30.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
+.++|.|++|||||++|-.+|..+...+...+.+++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 6799999999999999999998876665566666664
No 122
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.15 E-value=0.053 Score=61.47 Aligned_cols=140 Identities=11% Similarity=0.121 Sum_probs=83.9
Q ss_pred CchhhHHHHHHHhh---cc------cccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhh
Q 001355 210 DVDENCRRIGEVLA---GR------DEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINE 277 (1093)
Q Consensus 210 ~rdeeirrv~~vL~---R~------~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~ 277 (1093)
|.++-++.+.+.+. +. ..+..++.+|.|.+|.| .++.++..+ +..++.+. ...
T Consensus 55 G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-------------~~~~~~v~--~~~ 119 (355)
T 2qp9_X 55 GLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-------------NSTFFSVS--SSD 119 (355)
T ss_dssp CGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH-------------TCEEEEEE--HHH
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-------------CCCEEEee--HHH
Confidence 45665666655542 10 11234688999999998 477777664 35678877 666
Q ss_pred hhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCC--cchHHHHHHHHHHhhhcCC--CCCcEEEEEecc
Q 001355 278 FVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSV--STEAARFVVSQLTSLLKSG--NGEKLWLIGAAM 353 (1093)
Q Consensus 278 ~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~--~~~~~~~~v~el~~Ll~~~--~~g~lwliG~a~ 353 (1093)
++ ..+.++.+..++.+-..... ..+.||||||++.+..... ..+....++.++-.++... ....+.+||+|
T Consensus 120 l~--~~~~g~~~~~~~~~f~~a~~--~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~at- 194 (355)
T 2qp9_X 120 LV--SKWMGESEKLVKQLFAMARE--NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGAT- 194 (355)
T ss_dssp HH--SCC---CHHHHHHHHHHHHH--TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEE-
T ss_pred Hh--hhhcchHHHHHHHHHHHHHH--cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeec-
Confidence 64 34567788888888776664 5678999999999986532 2345556666655555311 23579999984
Q ss_pred cHHHHHhhhhcCCCCCCCCcc
Q 001355 354 SYETYLKMLAKFPGLDNDWDL 374 (1093)
Q Consensus 354 T~~tY~k~~~~~PslE~~w~L 374 (1093)
.... .-+|++-++++.
T Consensus 195 n~~~-----~ld~al~rRf~~ 210 (355)
T 2qp9_X 195 NIPW-----QLDSAIRRRFER 210 (355)
T ss_dssp SCGG-----GSCHHHHHTCCE
T ss_pred CCcc-----cCCHHHHcccCE
Confidence 4321 334555555543
No 123
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=95.07 E-value=0.037 Score=54.54 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=47.9
Q ss_pred hhhcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhcc
Q 001355 9 RQCLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQS 61 (1093)
Q Consensus 9 ~q~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~ 61 (1093)
...||+.+..+|+.|...|++.||.++++.|++.|||..+.+....++...+.
T Consensus 77 ~~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~~~gi 129 (150)
T 2y1q_A 77 TIHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGV 129 (150)
T ss_dssp CCEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHHHcCC
Confidence 45799999999999999999999999999999999998888777777777774
No 124
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.98 E-value=0.064 Score=59.97 Aligned_cols=120 Identities=12% Similarity=0.150 Sum_probs=78.5
Q ss_pred CCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcE
Q 001355 231 KNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGV 307 (1093)
Q Consensus 231 ~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gv 307 (1093)
++.+|.|.+|.| .++.++... .+..++.+. ...++ ..+.++.+..++++-...+. ..+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~------------~~~~~~~i~--~~~l~--~~~~g~~~~~~~~lf~~a~~--~~~~ 107 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA------------NNSTFFSIS--SSDLV--SKWLGESEKLVKNLFQLARE--NKPS 107 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT------------TSCEEEEEE--CCSSC--CSSCCSCHHHHHHHHHHHHH--TSSE
T ss_pred ceEEEECCCCccHHHHHHHHHHHc------------CCCcEEEEE--hHHHH--hhhhhHHHHHHHHHHHHHHh--cCCc
Confidence 678999999998 366776653 345677777 55553 34556778888888777664 4578
Q ss_pred EEEeCcchhhhcCCC--cchHHHHHHHHHHhhhcCC--CCCcEEEEEecccHHHHHhhhhcCCCCCCCCcc
Q 001355 308 VVNYGELKVLVSDSV--STEAARFVVSQLTSLLKSG--NGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDL 374 (1093)
Q Consensus 308 il~igdl~~~v~~~~--~~~~~~~~v~el~~Ll~~~--~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~L 374 (1093)
||||||++-+..... ..+..+.++.++-..+... ..+.+.+|||| ... ..-+|+|-++++.
T Consensus 108 vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~at-n~~-----~~ld~al~rRf~~ 172 (322)
T 1xwi_A 108 IIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT-NIP-----WVLDSAIRRRFEK 172 (322)
T ss_dssp EEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEE-SCT-----TTSCHHHHHTCCE
T ss_pred EEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEec-CCc-----ccCCHHHHhhcCe
Confidence 999999999987543 2345566666655555421 24679999984 432 2345555555543
No 125
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.71 E-value=0.17 Score=56.32 Aligned_cols=140 Identities=11% Similarity=0.133 Sum_probs=87.0
Q ss_pred CchhhHHHHHHHhh---------cccccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhh
Q 001355 210 DVDENCRRIGEVLA---------GRDEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINE 277 (1093)
Q Consensus 210 ~rdeeirrv~~vL~---------R~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~ 277 (1093)
|.++-.+++.+.+. +...+..++.+|.|.+|.| .++.++... +..++.+. .+.
T Consensus 22 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-------------~~~~~~v~--~~~ 86 (322)
T 3eie_A 22 GLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-------------NSTFFSVS--SSD 86 (322)
T ss_dssp SCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH-------------TCEEEEEE--HHH
T ss_pred ChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH-------------CCCEEEEc--hHH
Confidence 55666666666552 1011234678999999998 466666653 45688887 666
Q ss_pred hhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCC--cchHHHHHHHHHHhhhcCC--CCCcEEEEEecc
Q 001355 278 FVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSV--STEAARFVVSQLTSLLKSG--NGEKLWLIGAAM 353 (1093)
Q Consensus 278 ~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~--~~~~~~~~v~el~~Ll~~~--~~g~lwliG~a~ 353 (1093)
++ ..+.++.+.+++++-...+. ..+.||||||++-+..... .....+.++.++-..+... ..+.+.+||+|
T Consensus 87 l~--~~~~g~~~~~~~~~f~~a~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~at- 161 (322)
T 3eie_A 87 LV--SKWMGESEKLVKQLFAMARE--NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGAT- 161 (322)
T ss_dssp HH--TTTGGGHHHHHHHHHHHHHH--TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEE-
T ss_pred Hh--hcccchHHHHHHHHHHHHHh--cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEec-
Confidence 63 35678889999998887775 4577999999999987542 1233444555555555321 34579999983
Q ss_pred cHHHHHhhhhcCCCCCCCCcc
Q 001355 354 SYETYLKMLAKFPGLDNDWDL 374 (1093)
Q Consensus 354 T~~tY~k~~~~~PslE~~w~L 374 (1093)
... ..-+|+|-++|+.
T Consensus 162 n~~-----~~ld~al~~Rf~~ 177 (322)
T 3eie_A 162 NIP-----WQLDSAIRRRFER 177 (322)
T ss_dssp SCG-----GGSCHHHHHHCCE
T ss_pred CCh-----hhCCHHHHcccCe
Confidence 421 1235555555543
No 126
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.59 E-value=0.31 Score=52.59 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=78.4
Q ss_pred CCchhhHHHHHHHhhcc---c-------ccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechh
Q 001355 209 DDVDENCRRIGEVLAGR---D-------EKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEI 275 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~---~-------~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~ 275 (1093)
+|.++.++++.+.+... + -+..++.+|.|.+|.| .++.++..+ +..++.+. .
T Consensus 20 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~-------------~~~~~~v~--~ 84 (285)
T 3h4m_A 20 GGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET-------------NATFIRVV--G 84 (285)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT-------------TCEEEEEE--G
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh-------------CCCEEEEe--h
Confidence 46777777777766420 0 0245688999999998 366666653 34677776 5
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCc--chHHHHHHHHHHhhhcC----CCCCcEEEE
Q 001355 276 NEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVS--TEAARFVVSQLTSLLKS----GNGEKLWLI 349 (1093)
Q Consensus 276 ~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~--~~~~~~~v~el~~Ll~~----~~~g~lwli 349 (1093)
..++ ..+.++.+.++..+...... ..+.||||||++-+...... .+........+..|+.. ..++.+.+|
T Consensus 85 ~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI 160 (285)
T 3h4m_A 85 SELV--KKFIGEGASLVKDIFKLAKE--KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKII 160 (285)
T ss_dssp GGGC--CCSTTHHHHHHHHHHHHHHH--TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEE
T ss_pred HHHH--HhccchHHHHHHHHHHHHHH--cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEE
Confidence 5553 34567888888888877664 45789999999999865321 11111222233333321 124579999
Q ss_pred Eec
Q 001355 350 GAA 352 (1093)
Q Consensus 350 G~a 352 (1093)
|++
T Consensus 161 ~tt 163 (285)
T 3h4m_A 161 GAT 163 (285)
T ss_dssp EEC
T ss_pred EeC
Confidence 984
No 127
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.57 E-value=0.37 Score=56.33 Aligned_cols=40 Identities=20% Similarity=0.072 Sum_probs=32.6
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE 765 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~ 765 (1093)
+.+++|.|++|+|||+++..||..+-........+++..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 5789999999999999999999888766666666776543
No 128
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.56 E-value=0.028 Score=56.30 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=27.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
.++|.|++|+|||++|++|++.+ ..+|+.++..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D 37 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD 37 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence 58999999999999999999987 3456765543
No 129
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.54 E-value=0.19 Score=59.52 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=94.9
Q ss_pred CCchhhHHHHHHHhhc---cc-------ccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechh
Q 001355 209 DDVDENCRRIGEVLAG---RD-------EKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEI 275 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R---~~-------~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~ 275 (1093)
+|.++.++++.+.+.+ .+ -+..++.+|.|++|.| .++.++... +..|+.+. .
T Consensus 207 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~-------------~~~fv~vn--~ 271 (489)
T 3hu3_A 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-------------GAFFFLIN--G 271 (489)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC-------------SSEEEEEE--H
T ss_pred CCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh-------------CCCEEEEE--c
Confidence 4677777777776542 00 1345688999999998 366665542 46788888 7
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCC--cchHHHHHHHHHHhhhcC-CCCCcEEEEEec
Q 001355 276 NEFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSV--STEAARFVVSQLTSLLKS-GNGEKLWLIGAA 352 (1093)
Q Consensus 276 ~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~--~~~~~~~~v~el~~Ll~~-~~~g~lwliG~a 352 (1093)
+.+.. .+-++.+.+++++-..... +.+.||||||++.+..... .......++.+|-++|.. ...+.+.+||||
T Consensus 272 ~~l~~--~~~g~~~~~~~~~f~~A~~--~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaT 347 (489)
T 3hu3_A 272 PEIMS--KLAGESESNLRKAFEEAEK--NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (489)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHHHH--TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEE
T ss_pred hHhhh--hhcchhHHHHHHHHHHHHh--cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEec
Confidence 76643 3457888888887776654 5578999999999988543 123445666677777753 235679999984
Q ss_pred ccHHHHHhhhhcCCCCCC--CCcce
Q 001355 353 MSYETYLKMLAKFPGLDN--DWDLQ 375 (1093)
Q Consensus 353 ~T~~tY~k~~~~~PslE~--~w~Lq 375 (1093)
... ..-+|+|-+ +|+..
T Consensus 348 -n~~-----~~Ld~al~r~gRf~~~ 366 (489)
T 3hu3_A 348 -NRP-----NSIDPALRRFGRFDRE 366 (489)
T ss_dssp -SCG-----GGBCGGGGSTTSSCEE
T ss_pred -CCc-----cccCHHHhCCCcCceE
Confidence 543 234678777 67654
No 130
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.48 E-value=0.096 Score=59.90 Aligned_cols=96 Identities=16% Similarity=0.241 Sum_probs=53.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccC-CCceEEeecCCccccCCCCccccCCCcccc-ccccccchhhhHHHHHHHhCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGN-KGKLIHVDVSSEQRVSQPNSIFDCQNIDFC-DCKLRGKVLVDYIYQEFRSKP 804 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs-~~~fv~id~s~~~~~~~~~si~~~~~l~G~-~~g~~g~~~~~~l~eal~~~p 804 (1093)
..+++.||+|+|||++.++|+..+... ...++.++-.. . ...... ..++.. ..|.....+...+..+++..|
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~-e-~~~~~~----~~~v~Q~~~g~~~~~~~~~l~~~L~~~p 210 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI-E-YVFKHK----KSIVNQREVGEDTKSFADALRAALREDP 210 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSC-C-SCCCCS----SSEEEEEEBTTTBSCSHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccH-h-hhhccC----ceEEEeeecCCCHHHHHHHHHHHhhhCc
Confidence 479999999999999999999877543 33443443211 0 000000 011100 001011234467788888766
Q ss_pred ceEEEEcccccccCHHHHHHHhhhhcCC
Q 001355 805 YSVVFLEDLDKAADPIVQSSLTKAISTG 832 (1093)
Q Consensus 805 ~~VI~LDEVDkiad~~vq~~Ll~aLe~G 832 (1093)
.+|++||+-. ++....++++...|
T Consensus 211 -d~illdE~~d---~e~~~~~l~~~~~g 234 (372)
T 2ewv_A 211 -DVIFVGEMRD---LETVETALRAAETG 234 (372)
T ss_dssp -SEEEESCCCS---HHHHHHHHHHHTTT
T ss_pred -CEEEECCCCC---HHHHHHHHHHHhcC
Confidence 6999999853 34344444555444
No 131
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.34 E-value=0.078 Score=64.15 Aligned_cols=93 Identities=14% Similarity=0.240 Sum_probs=52.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcc--cc-----CCCCccccCCCcccccc-ccccchhhhHHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQ--RV-----SQPNSIFDCQNIDFCDC-KLRGKVLVDYIYQE 799 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~--~~-----~~~~si~~~~~l~G~~~-g~~g~~~~~~l~ea 799 (1093)
.+++.|++|||||+++.+|+..+......++.+..+... .. .....+ ..+++... +|.. ..
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Ti---h~ll~~~~~~~~~--------~~ 274 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTV---HRLLGYGPQGFRH--------NH 274 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEH---HHHTTEETTEESC--------SS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHH---HHHHcCCcchhhh--------hh
Confidence 689999999999999999998776554444333221100 00 000000 00111100 1000 00
Q ss_pred HHhCCceEEEEcccccccCHHHHHHHhhhhcCC
Q 001355 800 FRSKPYSVVFLEDLDKAADPIVQSSLTKAISTG 832 (1093)
Q Consensus 800 l~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~G 832 (1093)
-...+..+|++||+.. ++......|++++..|
T Consensus 275 ~~~~~~dvlIIDEasm-l~~~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSM-MGDALMLSLLAAVPPG 306 (574)
T ss_dssp SSCCSCSEEEECCGGG-CCHHHHHHHHTTSCTT
T ss_pred cccccCCEEEEcCccC-CCHHHHHHHHHhCcCC
Confidence 0112456999999999 9999999999888643
No 132
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=94.26 E-value=0.085 Score=51.46 Aligned_cols=53 Identities=17% Similarity=0.084 Sum_probs=48.0
Q ss_pred hhhcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhcc
Q 001355 9 RQCLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQS 61 (1093)
Q Consensus 9 ~q~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~ 61 (1093)
+..+|+.+..+|+.|...|++.|+.+|.+.|++.||+..+.+...+.+...+.
T Consensus 77 ~~~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~~gi 129 (143)
T 1k6k_A 77 DTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEV 129 (143)
T ss_dssp SCEECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHHcCC
Confidence 45799999999999999999999999999999999999888877787777764
No 133
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.09 E-value=0.3 Score=58.47 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=33.3
Q ss_pred CccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHH
Q 001355 695 GWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 695 iGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
+|.++.+..|...+..... ....++.++|+.|+|||++|+.++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~----------~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD----------LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT----------SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC----------CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5888888888877743211 0124789999999999999999995
No 134
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.00 E-value=0.045 Score=73.32 Aligned_cols=90 Identities=11% Similarity=0.163 Sum_probs=51.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCcc-ccCCCCcccc--CCCccccccccccchhhhHHHHHHHhC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQ-RVSQPNSIFD--CQNIDFCDCKLRGKVLVDYIYQEFRSK 803 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~-~~~~~~si~~--~~~l~G~~~g~~g~~~~~~l~eal~~~ 803 (1093)
-.++++||+|||||.+|++++........+-+.|+....- .... .+ +| ...+++..+. .+...++.+....+..
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~-~~-~G~d~~~~~~~~~~-~~e~~l~~~~~~ar~~ 1159 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA-RK-LGVDIDNLLCSQPD-TGEQALEICDALARSG 1159 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHH-HH-TTCCGGGCEEECCS-SHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHH-HH-hCCCHHHHhhcccc-chHHHHHHHHHHHHhc
Confidence 4599999999999999999886554445565556654311 0000 00 00 0123332111 1222344455545666
Q ss_pred CceEEEEcccccccCH
Q 001355 804 PYSVVFLEDLDKAADP 819 (1093)
Q Consensus 804 p~~VI~LDEVDkiad~ 819 (1093)
...+||+|+|+.|+..
T Consensus 1160 ~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1160 AVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp CCSEEEESCGGGCCCH
T ss_pred CCeEEEeCchHhcCcc
Confidence 7789999999863433
No 135
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.99 E-value=0.087 Score=59.26 Aligned_cols=92 Identities=13% Similarity=0.203 Sum_probs=54.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYSV 807 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~V 807 (1093)
.+++.||+|+|||++.++|+..+... .-.+.++-.. ... .......++...+ -|......+..++..+| .+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~--e~~----~~~~~~~i~~~~g-gg~~~r~~la~aL~~~p-~i 243 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTE--EIV----FKHHKNYTQLFFG-GNITSADCLKSCLRMRP-DR 243 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSC--CCC----CSSCSSEEEEECB-TTBCHHHHHHHHTTSCC-SE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCee--ccc----cccchhEEEEEeC-CChhHHHHHHHHhhhCC-CE
Confidence 58999999999999999999876433 3345555321 000 0000111111111 13445567778888776 69
Q ss_pred EEEcccccccCHHHHHHHhhhhcCC
Q 001355 808 VFLEDLDKAADPIVQSSLTKAISTG 832 (1093)
Q Consensus 808 I~LDEVDkiad~~vq~~Ll~aLe~G 832 (1093)
|+|||+.. . +++. +++.+.+|
T Consensus 244 lildE~~~-~--e~~~-~l~~~~~g 264 (330)
T 2pt7_A 244 IILGELRS-S--EAYD-FYNVLCSG 264 (330)
T ss_dssp EEECCCCS-T--HHHH-HHHHHHTT
T ss_pred EEEcCCCh-H--HHHH-HHHHHhcC
Confidence 99999876 3 4555 44555554
No 136
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.93 E-value=0.08 Score=54.98 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=51.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
...+++||.|+|||+.+..++...-+.....+.+......... ...+.. ..|......+......+.+.+. .++.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~-~~~i~s---~~g~~~~a~~~~~~~~i~~~~~-~~~d 83 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYS-KEDVVS---HMGEKEQAVAIKNSREILKYFE-EDTE 83 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------CEEEC---TTSCEEECEEESSSTHHHHHCC-TTCS
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccch-HHHHHh---hcCCceeeEeeCCHHHHHHHHh-ccCC
Confidence 4688999999999988877776654555554444322111000 011110 0011000000011123444443 2467
Q ss_pred EEEEcccccccCHHHHHHHhhhhcC
Q 001355 807 VVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 807 VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
+|+|||+.. ++++....|..+.+.
T Consensus 84 vViIDEaqf-l~~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 84 VIAIDEVQF-FDDEIVEIVNKIAES 107 (191)
T ss_dssp EEEECSGGG-SCTHHHHHHHHHHHT
T ss_pred EEEEECCCC-CCHHHHHHHHHHHhC
Confidence 999999999 887766666555443
No 137
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.91 E-value=0.037 Score=55.90 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.|++|+|||++|+.||+.+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 138
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.87 E-value=0.11 Score=60.67 Aligned_cols=121 Identities=12% Similarity=0.138 Sum_probs=73.2
Q ss_pred CCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCc
Q 001355 230 GKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPG 306 (1093)
Q Consensus 230 k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~g 306 (1093)
.++.+|.|.+|.| .++.++..+ .+..++.+. .+.++ ..+.++.+..++.+....+. ..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~------------~~~~~~~v~--~~~l~--~~~~g~~~~~~~~~f~~a~~--~~~ 228 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA------------NNSTFFSIS--SSDLV--SKWLGESEKLVKNLFQLARE--NKP 228 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC------------CSSEEEEEC--CC-----------CCCTHHHHHHHHHH--SCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------------CCCCEEEEe--HHHHH--hhhcchHHHHHHHHHHHHHH--cCC
Confidence 4678999999998 366776653 245677777 55553 23556666777777766653 457
Q ss_pred EEEEeCcchhhhcCCC--cchHHHHHHHHHHhhhcCC--CCCcEEEEEecccHHHHHhhhhcCCCCCCCCcc
Q 001355 307 VVVNYGELKVLVSDSV--STEAARFVVSQLTSLLKSG--NGEKLWLIGAAMSYETYLKMLAKFPGLDNDWDL 374 (1093)
Q Consensus 307 vil~igdl~~~v~~~~--~~~~~~~~v~el~~Ll~~~--~~g~lwliG~a~T~~tY~k~~~~~PslE~~w~L 374 (1093)
.||||||++-+..... ..+....++.++-..+... ..+.+.+|||| ... ..-+|+|-++++.
T Consensus 229 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~at-n~~-----~~ld~al~rRf~~ 294 (444)
T 2zan_A 229 SIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT-NIP-----WVLDSAIRRRFEK 294 (444)
T ss_dssp EEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEE-SCG-----GGSCHHHHTTCCE
T ss_pred eEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecC-CCc-----cccCHHHHhhcce
Confidence 8999999999976532 2345555655555555321 24679999984 432 2345666666653
No 139
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.85 E-value=0.43 Score=50.50 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=46.3
Q ss_pred CCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCc
Q 001355 230 GKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPG 306 (1093)
Q Consensus 230 k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~g 306 (1093)
.++.+|.|++|.| .++.++..+ +..++.+. .+.+. ..+.++.+.+++.+...... ..+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~-------------~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~a~~--~~~ 99 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA-------------QVPFLAMA--GAEFV--EVIGGLGAARVRSLFKEARA--RAP 99 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH-------------TCCEEEEE--TTTTS--SSSTTHHHHHHHHHHHHHHH--TCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-------------CCCEEEec--hHHHH--hhccChhHHHHHHHHHHHHh--cCC
Confidence 4567889999998 477777654 23466666 55552 34556777777777766654 457
Q ss_pred EEEEeCcchhhhcCC
Q 001355 307 VVVNYGELKVLVSDS 321 (1093)
Q Consensus 307 vil~igdl~~~v~~~ 321 (1093)
.||||||++.+....
T Consensus 100 ~vl~iDeid~l~~~~ 114 (262)
T 2qz4_A 100 CIVYIDEIDAVGKKR 114 (262)
T ss_dssp EEEEEECC-------
T ss_pred eEEEEeCcchhhccc
Confidence 899999999997653
No 140
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.83 E-value=0.2 Score=57.93 Aligned_cols=126 Identities=13% Similarity=0.080 Sum_probs=88.6
Q ss_pred CCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCc
Q 001355 230 GKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPG 306 (1093)
Q Consensus 230 k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~g 306 (1093)
.+..+|.|-||.| .++.+|.. .++.|+++. .+.+ ..++-||-|.+++++-...+. ..+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e-------------~~~~f~~v~--~s~l--~sk~vGese~~vr~lF~~Ar~--~aP 242 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH-------------TDCKFIRVS--GAEL--VQKYIGEGSRMVRELFVMARE--HAP 242 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH-------------HTCEEEEEE--GGGG--SCSSTTHHHHHHHHHHHHHHH--TCS
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh-------------hCCCceEEE--hHHh--hccccchHHHHHHHHHHHHHH--hCC
Confidence 5789999999998 36666665 356799998 7777 356889999999999988875 568
Q ss_pred EEEEeCcchhhhcCCCc--c---hHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCC--CCcce-ee
Q 001355 307 VVVNYGELKVLVSDSVS--T---EAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDN--DWDLQ-LL 377 (1093)
Q Consensus 307 vil~igdl~~~v~~~~~--~---~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~--~w~Lq-~v 377 (1093)
.||||||+..+...... . ..+...++++=..+.. ...+.+-+|||| .. --.-||+|=+ +||.+ .+
T Consensus 243 ~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaAT-Nr-----pd~LDpAllRpGRfD~~I~i 316 (405)
T 4b4t_J 243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMAT-NR-----LDILDPALLRPGRIDRKIEF 316 (405)
T ss_dssp EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEE-SC-----SSSSCHHHHSTTSSCCEEEC
T ss_pred ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEecc-CC-----hhhCCHhHcCCCcCceEEEc
Confidence 99999999999875321 1 2334444443333331 134579999984 42 3356888877 78877 55
Q ss_pred ecc
Q 001355 378 PIH 380 (1093)
Q Consensus 378 ~i~ 380 (1093)
+.|
T Consensus 317 ~lP 319 (405)
T 4b4t_J 317 PPP 319 (405)
T ss_dssp CCC
T ss_pred CCc
Confidence 666
No 141
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.36 Score=56.21 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=87.7
Q ss_pred CCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCc
Q 001355 230 GKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPG 306 (1093)
Q Consensus 230 k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~g 306 (1093)
.+..+|.|-||.| .++.+|.. -++.|+.+. .+.++ .++-||-|.+++++-...+. ..+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e-------------~~~~fi~v~--~s~l~--sk~vGesek~ir~lF~~Ar~--~aP 276 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ-------------TSATFLRIV--GSELI--QKYLGDGPRLCRQIFKVAGE--NAP 276 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH-------------HTCEEEEEE--SGGGC--CSSSSHHHHHHHHHHHHHHH--TCS
T ss_pred CCCCceECCCCchHHHHHHHHHHH-------------hCCCEEEEE--HHHhh--hccCchHHHHHHHHHHHHHh--cCC
Confidence 5789999999998 36777665 256789988 77773 56789999999999988775 568
Q ss_pred EEEEeCcchhhhcCCCc-----chHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCC--CCcce-ee
Q 001355 307 VVVNYGELKVLVSDSVS-----TEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDN--DWDLQ-LL 377 (1093)
Q Consensus 307 vil~igdl~~~v~~~~~-----~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~--~w~Lq-~v 377 (1093)
.||||||+..+...... ...+...++++=..+.. ...+.+-+|||| .+ --.-||+|=+ +||.+ .|
T Consensus 277 ~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaAT-Nr-----pd~LDpALlRpGRfD~~I~v 350 (437)
T 4b4t_I 277 SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMAT-NK-----IETLDPALIRPGRIDRKILF 350 (437)
T ss_dssp EEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEE-SC-----STTCCTTSSCTTTEEEEECC
T ss_pred cEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeC-CC-----hhhcCHHHhcCCceeEEEEc
Confidence 99999999999876421 12233333333222221 234679999984 43 3356999988 88877 45
Q ss_pred ecc
Q 001355 378 PIH 380 (1093)
Q Consensus 378 ~i~ 380 (1093)
+.|
T Consensus 351 ~lP 353 (437)
T 4b4t_I 351 ENP 353 (437)
T ss_dssp CCC
T ss_pred CCc
Confidence 555
No 142
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.57 E-value=0.047 Score=56.27 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=22.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.|++|+|||++|+.||+.+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999987
No 143
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.55 E-value=0.13 Score=53.75 Aligned_cols=24 Identities=13% Similarity=-0.026 Sum_probs=19.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
...+|+|++|+|||.+|..+....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 367899999999999998865543
No 144
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=93.54 E-value=0.14 Score=50.04 Aligned_cols=52 Identities=21% Similarity=0.135 Sum_probs=44.5
Q ss_pred hhhcCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHccCCCchHHHHHHhhcc
Q 001355 9 RQCLSEESARVLDDAVGVARQRRHSQTTSLHVVSALLCVPSSLLREACDRVQS 61 (1093)
Q Consensus 9 ~q~lt~~a~~~l~~A~~lA~rr~h~q~tplH~~~alL~~~~~~lr~a~~~~~~ 61 (1093)
+..+|+.+..+|+.|...|+..||.++++.|++.||| ...+...+++...+.
T Consensus 80 ~~~~s~~~~~vl~~A~~~a~~~~~~~i~~ehlLlall-~~~~~~~~~L~~~gi 131 (148)
T 1khy_A 80 DVQPSQDLVRVLNLCDKLAQKRGDNFISSELFVLAAL-ESRGTLADILKAAGA 131 (148)
T ss_dssp --CBCHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH-TSCHHHHHHHHHTTC
T ss_pred CcCcCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH-cCCcHHHHHHHHcCC
Confidence 4579999999999999999999999999999999999 456667777777763
No 145
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.49 E-value=0.15 Score=69.38 Aligned_cols=89 Identities=13% Similarity=0.177 Sum_probs=50.5
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccc-cCCCccccccccccchhhhHHHHHHHhCC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIF-DCQNIDFCDCKLRGKVLVDYIYQEFRSKP 804 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~-~~~~l~G~~~g~~g~~~~~~l~eal~~~p 804 (1093)
+..++|+||+|||||++|.+++..........+.++....-......... ....+.-..+. .+..+...+...++...
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~-~~E~~l~~~~~lvr~~~ 1505 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD-TGEQALEICDALARSGA 1505 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCS-SHHHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCC-hHHHHHHHHHHHHhcCC
Confidence 35799999999999999999988766555666667765311000000000 00000000011 12234445555566666
Q ss_pred ceEEEEccccc
Q 001355 805 YSVVFLEDLDK 815 (1093)
Q Consensus 805 ~~VI~LDEVDk 815 (1093)
..+||||+++-
T Consensus 1506 ~~lVVIDsi~a 1516 (2050)
T 3cmu_A 1506 VDVIVVDSVAA 1516 (2050)
T ss_dssp CSEEEESCGGG
T ss_pred CCEEEEcChhH
Confidence 78999999974
No 146
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.47 E-value=0.14 Score=56.28 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=27.7
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
+..++|.||+|+|||++|+.|++.+. ..+++|+..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D 67 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDND 67 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEech
Confidence 35799999999999999999998762 245667653
No 147
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.45 E-value=0.26 Score=57.50 Aligned_cols=126 Identities=11% Similarity=0.146 Sum_probs=87.3
Q ss_pred CCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCc
Q 001355 230 GKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPG 306 (1093)
Q Consensus 230 k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~g 306 (1093)
.+..+|.|-||.| .++.+|.. -++.|+.+. .+.+ ..++-|+-|.+++++-...+. ..+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e-------------~~~~f~~v~--~s~l--~~~~vGese~~ir~lF~~A~~--~aP 275 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ-------------TNATFLKLA--APQL--VQMYIGEGAKLVRDAFALAKE--KAP 275 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH-------------HTCEEEEEE--GGGG--CSSCSSHHHHHHHHHHHHHHH--HCS
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH-------------hCCCEEEEe--hhhh--hhcccchHHHHHHHHHHHHHh--cCC
Confidence 5789999999998 36776665 256799998 7777 456889999999999887775 458
Q ss_pred EEEEeCcchhhhcCCCc--chHHHHHHHHHHhhh---cC-CCCCcEEEEEecccHHHHHhhhhcCCCCCC--CCcce-ee
Q 001355 307 VVVNYGELKVLVSDSVS--TEAARFVVSQLTSLL---KS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDN--DWDLQ-LL 377 (1093)
Q Consensus 307 vil~igdl~~~v~~~~~--~~~~~~~v~el~~Ll---~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~--~w~Lq-~v 377 (1093)
.||||||+..+...... .++...+...+..|| .. ...+++-+|||| . +--.-||+|=+ +||.+ .+
T Consensus 276 ~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaT-N-----rp~~LD~AllRpGRfD~~I~i 349 (434)
T 4b4t_M 276 TIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAAT-N-----RVDVLDPALLRSGRLDRKIEF 349 (434)
T ss_dssp EEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEEC-S-----SCCCCCTTTCSTTSEEEEEEC
T ss_pred eEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeC-C-----CchhcCHhHhcCCceeEEEEe
Confidence 99999999999886532 122222223334444 21 124578999984 3 23346899966 88777 45
Q ss_pred ecc
Q 001355 378 PIH 380 (1093)
Q Consensus 378 ~i~ 380 (1093)
+.|
T Consensus 350 ~lP 352 (434)
T 4b4t_M 350 PLP 352 (434)
T ss_dssp CCC
T ss_pred CCc
Confidence 555
No 148
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.43 E-value=0.057 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.|++|+|||++|+.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 149
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.43 E-value=0.2 Score=58.57 Aligned_cols=40 Identities=20% Similarity=0.106 Sum_probs=31.6
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 725 RGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 725 ~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.+.+++|.|++|+|||+++..||..+-........+++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 3578999999999999999999988766555655566554
No 150
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.31 Score=57.16 Aligned_cols=127 Identities=13% Similarity=0.096 Sum_probs=87.7
Q ss_pred CCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCC
Q 001355 229 KGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGP 305 (1093)
Q Consensus 229 ~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~ 305 (1093)
-.+..+|.|-||.| .++.+|... ++.|+.+. .+.|+ .++-||-|.+++++-...+. ..
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~-------------~~~fi~vs--~s~L~--sk~vGesek~ir~lF~~Ar~--~a 302 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT-------------DATFIRVI--GSELV--QKYVGEGARMVRELFEMART--KK 302 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH-------------TCEEEEEE--GGGGC--CCSSSHHHHHHHHHHHHHHH--TC
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc-------------CCCeEEEE--hHHhh--cccCCHHHHHHHHHHHHHHh--cC
Confidence 35789999999998 367776652 46789988 77773 56889999999999988775 56
Q ss_pred cEEEEeCcchhhhcCCCc--chHHHHHHHHHHhhhc---C-CCCCcEEEEEecccHHHHHhhhhcCCCCCC--CCcce-e
Q 001355 306 GVVVNYGELKVLVSDSVS--TEAARFVVSQLTSLLK---S-GNGEKLWLIGAAMSYETYLKMLAKFPGLDN--DWDLQ-L 376 (1093)
Q Consensus 306 gvil~igdl~~~v~~~~~--~~~~~~~v~el~~Ll~---~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~--~w~Lq-~ 376 (1093)
+.||||+|+..+...... .+....+...+..||. . ...+.+-+|||| . +--.-||+|-+ +||.+ .
T Consensus 303 P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaAT-N-----rpd~LDpALlRpGRFD~~I~ 376 (467)
T 4b4t_H 303 ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFAT-N-----RPNTLDPALLRPGRIDRKVE 376 (467)
T ss_dssp SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEEC-S-----CTTSBCHHHHSTTTCCEEEC
T ss_pred CceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCC-C-----CcccCChhhhccccccEEEE
Confidence 899999999999876432 1222222223333332 1 235679999984 3 23356888877 78777 5
Q ss_pred eecc
Q 001355 377 LPIH 380 (1093)
Q Consensus 377 v~i~ 380 (1093)
++.|
T Consensus 377 i~lP 380 (467)
T 4b4t_H 377 FSLP 380 (467)
T ss_dssp CCCC
T ss_pred eCCc
Confidence 5555
No 151
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.26 E-value=0.3 Score=54.69 Aligned_cols=86 Identities=9% Similarity=0.039 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHhcccCccHH---HHHHHHHHHHHHHhcCC-----CCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 679 DPRDYKTLRIALAEKVGWQDE---AICTISQAVSRWRIGNG-----RDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 679 d~e~lk~L~~~L~e~ViGQde---ai~~Ia~aI~~~rsg~~-----~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+-.+.|.+.+.+++.|++- +...+.+.+........ .+-.-..+.+..++|.|++|+|||+++..||..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 50 GMKMVLKVSNLVRKKTKRDTSFENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 334456666777777776532 23334444433322111 1100111234579999999999999999999887
Q ss_pred ccCCCceEEeecCC
Q 001355 751 FGNKGKLIHVDVSS 764 (1093)
Q Consensus 751 fgs~~~fv~id~s~ 764 (1093)
-........+|+..
T Consensus 130 ~~~g~kVllid~D~ 143 (320)
T 1zu4_A 130 AELGYKVLIAAADT 143 (320)
T ss_dssp HHTTCCEEEEECCC
T ss_pred HHCCCeEEEEeCCC
Confidence 65566666677654
No 152
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.23 E-value=0.057 Score=54.63 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=22.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.|++|+|||++|+.|++.+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999977
No 153
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.15 E-value=0.065 Score=53.94 Aligned_cols=37 Identities=11% Similarity=0.015 Sum_probs=26.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..++|.|++|+|||++|+.|++.+-.....+..++.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 3689999999999999999999773222224444433
No 154
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.14 E-value=0.056 Score=54.44 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=28.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
.++|.|++|+|||++|+.|++.+-.....+..++.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 489999999999999999999874333445666543
No 155
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.10 E-value=0.065 Score=57.79 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=25.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
.+++.||+|+|||++|+.||+.+ +..++..|
T Consensus 3 li~I~G~~GSGKSTla~~La~~~---~~~~i~~D 33 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET---GWPVVALD 33 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCCEEECC
T ss_pred EEEEECCCCcCHHHHHHHHHhcC---CCeEEecc
Confidence 47899999999999999999987 34455544
No 156
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.09 E-value=0.33 Score=53.93 Aligned_cols=75 Identities=13% Similarity=0.063 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcccCcc-----HHHHHHHHHHHHHHHhcCC--CCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhccCC
Q 001355 682 DYKTLRIALAEKVGWQ-----DEAICTISQAVSRWRIGNG--RDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFGNK 754 (1093)
Q Consensus 682 ~lk~L~~~L~e~ViGQ-----deai~~Ia~aI~~~rsg~~--~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~ 754 (1093)
-.+.+.+.+.+++.++ +.+...+.+.+........ .+-...-+.+-.+.|.||+|+|||++++.||..+-...
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~ 128 (302)
T 3b9q_A 49 ITVRIVERLREDIMSGKLKSGSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG 128 (302)
T ss_dssp HHHHHHHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3445555555444433 3344555555544432111 11011112346899999999999999999998775443
Q ss_pred Cc
Q 001355 755 GK 756 (1093)
Q Consensus 755 ~~ 756 (1093)
..
T Consensus 129 g~ 130 (302)
T 3b9q_A 129 TK 130 (302)
T ss_dssp CC
T ss_pred Ce
Confidence 33
No 157
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.07 E-value=0.39 Score=58.40 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.0
Q ss_pred CceEEEEcccccccCHHHHHHHhhhhc
Q 001355 804 PYSVVFLEDLDKAADPIVQSSLTKAIS 830 (1093)
Q Consensus 804 p~~VI~LDEVDkiad~~vq~~Ll~aLe 830 (1093)
+..+|+|||++. ++......|++++.
T Consensus 262 ~~d~lIIDEAsm-l~~~~~~~Ll~~l~ 287 (608)
T 1w36_D 262 HLDVLVVDEASM-IDLPMMSRLIDALP 287 (608)
T ss_dssp SCSEEEECSGGG-CBHHHHHHHHHTCC
T ss_pred CCCEEEEechhh-CCHHHHHHHHHhCC
Confidence 456999999998 99888888888775
No 158
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.04 E-value=0.062 Score=53.49 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=22.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-+++|.|++|+|||++|+.||+.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999987
No 159
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.98 E-value=0.089 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
.+.|.||+|+|||++.+.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 488999999999999999998774
No 160
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.91 E-value=0.16 Score=56.75 Aligned_cols=130 Identities=16% Similarity=0.182 Sum_probs=71.1
Q ss_pred CCchhhHHHHHHHhhcc-cccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhh------
Q 001355 209 DDVDENCRRIGEVLAGR-DEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEF------ 278 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~-~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~------ 278 (1093)
.||++++.++.+.|.+- ..+..++.+|.|.+|+| .++.++..+..... ..=.+..++.++ ....
T Consensus 22 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~----~~~~~~~~~~i~--~~~~~~~~~~ 95 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARAS----SLGVLVKPIYVN--ARHRETPYRV 95 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHH----HHTCCEEEEEEE--TTTSCSHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHh----ccCCCeEEEEEE--CCcCCCHHHH
Confidence 57999999999988541 01346789999999998 36777766543100 000145666665 2211
Q ss_pred -------hc-----CCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCC-CCc
Q 001355 279 -------VG-----GRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGN-GEK 345 (1093)
Q Consensus 279 -------~a-----~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~-~g~ 345 (1093)
+. .+...++ -+..+...++.. ++++||+|||++++..... ...+...+-+.+.... .++
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~---~~~~l~~~l~~~-~~~~vlilDEi~~l~~~~~----~~~~l~~l~~~~~~~~~~~~ 167 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGE---VYERLVKRLSRL-RGIYIIVLDEIDFLPKRPG----GQDLLYRITRINQELGDRVW 167 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHH---HHHHHHHHHTTS-CSEEEEEEETTTHHHHSTT----HHHHHHHHHHGGGCC-----
T ss_pred HHHHHHHhCCCCCCCCCCHHH---HHHHHHHHHhcc-CCeEEEEEccHhhhcccCC----CChHHHhHhhchhhcCCCce
Confidence 00 0011222 233444444443 6789999999999976531 1222223333332122 467
Q ss_pred EEEEEec
Q 001355 346 LWLIGAA 352 (1093)
Q Consensus 346 lwliG~a 352 (1093)
+.+||++
T Consensus 168 ~~~I~~t 174 (387)
T 2v1u_A 168 VSLVGIT 174 (387)
T ss_dssp CEEEEEC
T ss_pred EEEEEEE
Confidence 8999984
No 161
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.84 E-value=0.067 Score=55.82 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=22.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.|++|+|||++|+.||+.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 569999999999999999999987
No 162
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.84 E-value=0.59 Score=50.72 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=72.7
Q ss_pred CCchhhHHHHHHHhhc---------ccccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhh
Q 001355 209 DDVDENCRRIGEVLAG---------RDEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEIN 276 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R---------~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~ 276 (1093)
+|.++-++.+.+.+.. +-....++.+|.|++|.| .++.++... +..++.+. .+
T Consensus 24 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~-------------~~~~~~i~--~~ 88 (297)
T 3b9p_A 24 AGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC-------------SATFLNIS--AA 88 (297)
T ss_dssp CCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT-------------TCEEEEEE--ST
T ss_pred CChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh-------------CCCeEEee--HH
Confidence 3566666666665521 000235688999999998 366666543 34577776 55
Q ss_pred hhhcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCc--chHHHHHHHHHHhhhcCC----CCCcEEEEE
Q 001355 277 EFVGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVS--TEAARFVVSQLTSLLKSG----NGEKLWLIG 350 (1093)
Q Consensus 277 ~~~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~--~~~~~~~v~el~~Ll~~~----~~g~lwliG 350 (1093)
.+. ..+.++.+.+++.+...... ..+.||||||++.+.+.... ......+..++-..+... .++++.+||
T Consensus 89 ~l~--~~~~~~~~~~~~~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~ 164 (297)
T 3b9p_A 89 SLT--SKYVGDGEKLVRALFAVARH--MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLA 164 (297)
T ss_dssp TTS--SSSCSCHHHHHHHHHHHHHH--TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEE
T ss_pred HHh--hcccchHHHHHHHHHHHHHH--cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEe
Confidence 552 33456677777777776654 45778999999999876431 112223333333333211 135799999
Q ss_pred ec
Q 001355 351 AA 352 (1093)
Q Consensus 351 ~a 352 (1093)
+|
T Consensus 165 ~t 166 (297)
T 3b9p_A 165 AT 166 (297)
T ss_dssp EE
T ss_pred ec
Confidence 84
No 163
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.84 E-value=0.64 Score=46.97 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=71.2
Q ss_pred CCchhhHHHHHHHhhcccccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccH
Q 001355 209 DDVDENCRRIGEVLAGRDEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNV 285 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r 285 (1093)
.|+++.++++.+.+.+ ++..+.+|.|++|+| .++.++..+... .....++.++ .+. ....
T Consensus 20 ~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~--------~~~~~~~~~~--~~~----~~~~ 82 (226)
T 2chg_A 20 VGQDEVIQRLKGYVER---KNIPHLLFSGPPGTGKTATAIALARDLFGE--------NWRDNFIEMN--ASD----ERGI 82 (226)
T ss_dssp CSCHHHHHHHHHHHHT---TCCCCEEEECSTTSSHHHHHHHHHHHHHGG--------GGGGGEEEEE--TTC----TTCH
T ss_pred cCcHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHhcc--------ccccceEEec--ccc----ccCh
Confidence 4799999999999988 666789999999998 477777776432 1233455555 221 1223
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEEEec
Q 001355 286 EMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLIGAA 352 (1093)
Q Consensus 286 ~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwliG~a 352 (1093)
..+...++.+........+.+.||+|||++++-.. . ...+.+++. .....+.+|.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----~----~~~l~~~l~-~~~~~~~~i~~~ 139 (226)
T 2chg_A 83 DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----A----QAALRRTME-MYSKSCRFILSC 139 (226)
T ss_dssp HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----H----HHHHHHHHH-HTTTTEEEEEEE
T ss_pred HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----H----HHHHHHHHH-hcCCCCeEEEEe
Confidence 34444444433221111256899999999998531 1 224555554 223467778763
No 164
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.81 E-value=0.078 Score=54.44 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=23.2
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 725 RGIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 725 ~~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+..++|.|++|+|||++|+.|++.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33579999999999999999999977
No 165
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.73 E-value=0.064 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.|++|+|||++|+.||+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 37899999999999999999987
No 166
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.70 E-value=0.071 Score=54.03 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=22.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.|++|+|||++|+.|++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999877
No 167
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.69 E-value=0.1 Score=53.80 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=27.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..+.|.||+|+|||++++.|+..+.......+.+|..
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 4689999999999999999999885323322355543
No 168
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.66 E-value=0.1 Score=52.53 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=28.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
..+.|.|++|+|||++++.|++.+....-+++.+|.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 568899999999999999999987543445666663
No 169
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.61 E-value=0.69 Score=54.02 Aligned_cols=126 Identities=14% Similarity=0.110 Sum_probs=87.4
Q ss_pred CCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCc
Q 001355 230 GKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPG 306 (1093)
Q Consensus 230 k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~g 306 (1093)
.+..+|.|-||.| .++.+|.. -|+.|+.+. .+.++ .++-||-+.++.++-...+. ..+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e-------------~~~~~~~v~--~s~l~--sk~~Gese~~ir~~F~~A~~--~~P 275 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT-------------IGANFIFSP--ASGIV--DKYIGESARIIREMFAYAKE--HEP 275 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH-------------HTCEEEEEE--GGGTC--CSSSSHHHHHHHHHHHHHHH--SCS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH-------------hCCCEEEEe--hhhhc--cccchHHHHHHHHHHHHHHh--cCC
Confidence 5789999999998 37777765 256789888 77773 56889999999999888775 568
Q ss_pred EEEEeCcchhhhcCCCc-----chHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCCC--Ccce-ee
Q 001355 307 VVVNYGELKVLVSDSVS-----TEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDND--WDLQ-LL 377 (1093)
Q Consensus 307 vil~igdl~~~v~~~~~-----~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~~--w~Lq-~v 377 (1093)
.||||||+..+...... ...+...++++=..+.. ...+.+-+|||| .. --.-||+|=+. ||.+ .|
T Consensus 276 ~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~AT-Nr-----p~~LDpAllRpGRfD~~I~i 349 (437)
T 4b4t_L 276 CIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMAT-NR-----PDTLDPALLRPGRLDRKVEI 349 (437)
T ss_dssp EEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEE-SS-----TTSSCTTTTSTTSEEEEECC
T ss_pred ceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEec-CC-----chhhCHHHhCCCccceeeec
Confidence 99999999999875321 22344444444333331 234578899974 42 23568999775 7666 45
Q ss_pred ecc
Q 001355 378 PIH 380 (1093)
Q Consensus 378 ~i~ 380 (1093)
+.|
T Consensus 350 ~lP 352 (437)
T 4b4t_L 350 PLP 352 (437)
T ss_dssp CCC
T ss_pred CCc
Confidence 555
No 170
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.59 E-value=0.07 Score=53.84 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=21.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.|++|+|||++|+.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 171
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.46 E-value=0.072 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=21.7
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|+|++|+|||++++.|++.+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999887
No 172
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.41 E-value=0.12 Score=52.39 Aligned_cols=37 Identities=27% Similarity=0.312 Sum_probs=28.9
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
+..++|.|++|+|||++++.|++.+......++.+|.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 3578999999999999999999988544444455553
No 173
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.41 E-value=0.45 Score=54.18 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=26.0
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHHhccCCCc
Q 001355 725 RGIWLAFLGPDKVGKKKIASALAEIVFGNKGK 756 (1093)
Q Consensus 725 ~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~ 756 (1093)
.+-.++|.||+|+|||++++.||..+-.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~ 187 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTK 187 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCE
Confidence 34689999999999999999999887544333
No 174
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.33 E-value=0.35 Score=53.84 Aligned_cols=133 Identities=17% Similarity=0.237 Sum_probs=75.0
Q ss_pred CCchhhHHHHHHHhhcc-cccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhh------
Q 001355 209 DDVDENCRRIGEVLAGR-DEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEF------ 278 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~-~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~------ 278 (1093)
.||++++.++.+.|.+- ..+..++.+|+|.+|+| .++.++..+... .|. +..++.++ ....
T Consensus 23 ~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~-~~~------~~~~~~i~--~~~~~~~~~~ 93 (386)
T 2qby_A 23 PHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK-FLG------KFKHVYIN--TRQIDTPYRV 93 (386)
T ss_dssp TTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHH-TCS------SCEEEEEE--HHHHCSHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH-hcC------CceEEEEE--CCCCCCHHHH
Confidence 58999999999988731 01456789999999998 377777766432 110 45666665 2211
Q ss_pred ----hc--CC-c-cHH-HHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEE
Q 001355 279 ----VG--GR-V-NVE-MMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLI 349 (1093)
Q Consensus 279 ----~a--~~-~-~r~-e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwli 349 (1093)
.. |. . ..+ ..+..+..+...++.. +.++||+|||++++.+.... .. ...+-+++......++.+|
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vlilDE~~~l~~~~~~-~~----l~~l~~~~~~~~~~~~~~I 167 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDY-GSQVVIVLDEIDAFVKKYND-DI----LYKLSRINSEVNKSKISFI 167 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTC-CSCEEEEEETHHHHHHSSCS-TH----HHHHHHHHHSCCC--EEEE
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc-CCeEEEEEcChhhhhccCcC-HH----HHHHhhchhhcCCCeEEEE
Confidence 00 00 0 000 1222334444444443 66899999999999875421 12 2233444421134578899
Q ss_pred EecccHHH
Q 001355 350 GAAMSYET 357 (1093)
Q Consensus 350 G~a~T~~t 357 (1093)
+++ +...
T Consensus 168 ~~~-~~~~ 174 (386)
T 2qby_A 168 GIT-NDVK 174 (386)
T ss_dssp EEE-SCGG
T ss_pred EEE-CCCC
Confidence 984 5433
No 175
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.32 E-value=0.089 Score=53.00 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=22.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.|++|+|||++|+.|++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 176
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.28 E-value=0.23 Score=53.30 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=28.0
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+..++|.|++|+|||++|+.|++.+. ..++.+|...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~ 67 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDS 67 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHH
Confidence 35799999999999999999999872 2345566543
No 177
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.25 E-value=0.081 Score=52.54 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=21.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.|++|+|||++|+.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 178
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.20 E-value=0.083 Score=52.57 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+.|+|++|+|||++++.||..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 179
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.18 E-value=0.18 Score=51.97 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=27.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..+.+.|++|+|||++++.|+..+......++.++..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 5799999999999999999998774333344444433
No 180
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.14 E-value=0.13 Score=58.69 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=30.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
..++++||+|+|||+++..++..+.......+++|...
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 46899999999999999999987755555666777543
No 181
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.08 E-value=0.078 Score=53.42 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=22.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.|++|+|||++|+.|++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 182
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=91.99 E-value=0.16 Score=51.88 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHHHHhhhcCCCCcchhhhhccccccceeeehhHHHHHHHhcCc--hhhhhhcccCCCcHHHHHhhccCC
Q 001355 95 ISNSLMAAIKRSQAQQRRNPDNYHLQQIHCNQQTASLLKVDLKYFVLAILDDP--MASRVFGEAGFLSRDIKLAIIQPS 171 (1093)
Q Consensus 95 ~Sn~l~aa~kraqa~qrr~~~~~~~~q~~~~~~~~~~~kv~~e~lilsilddp--~vsrv~~eagf~s~~vk~~i~~~~ 171 (1093)
++.....||..||...++...+ +|+.|||+++||+++ .+.++|+.+|.+...++..++ ..
T Consensus 25 fT~~a~~aL~~A~~~A~~~~h~----------------~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l 86 (171)
T 3zri_A 25 LNAQSKLALEQAASLCIERQHP----------------EVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-ST 86 (171)
T ss_dssp BCHHHHHHHHHHHHHHHHHTCS----------------EECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HH
T ss_pred cCHHHHHHHHHHHHHHHHcCCC----------------cccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HH
Confidence 5677778888886443332211 899999999999875 689999999999999999888 54
No 183
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.98 E-value=0.1 Score=51.59 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=21.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.|++|+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999977
No 184
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.96 E-value=0.4 Score=53.72 Aligned_cols=157 Identities=8% Similarity=-0.002 Sum_probs=85.9
Q ss_pred CCchhhHHHHHHHhhcc-cccCCCCcEEeccchhh---HHHHHHHHHhcC-CCCCCCccccCcEEEEeech---------
Q 001355 209 DDVDENCRRIGEVLAGR-DEKKGKNPLLVGVCANS---ALKGFVESVNGG-KVGLFPRQIYGLDVVCVEYE--------- 274 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~-~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~-~~g~vp~~L~~~~v~~l~~e--------- 274 (1093)
.+||+|+.++...|.+. .+.+.+|.+|.|-||.| .++.++..+... +.+++ ..+.++.+.--
T Consensus 23 ~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~----~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 23 KSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKEL----PIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSS----CCEEEEEEETTCCC--HHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccC----CceEEEEEeccccCCHHHHH
Confidence 36999999999887731 12456799999999998 488888877643 22333 35666666510
Q ss_pred --hhhhhcCCc-cHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEEEe
Q 001355 275 --INEFVGGRV-NVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLIGA 351 (1093)
Q Consensus 275 --~~~~~a~~~-~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwliG~ 351 (1093)
|..-+.|.. ..++....|.++-..+....+..+|+++||++.+.+ ....-. +-++.. ...+++-+||+
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~----q~~L~~----l~~~~~-~~~s~~~vI~i 169 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS----EKILQY----FEKWIS-SKNSKLSIICV 169 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC----THHHHH----HHHHHH-CSSCCEEEEEE
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc----chHHHH----HHhccc-ccCCcEEEEEE
Confidence 001111211 112223334443333311236789999999999991 223321 222222 23568999988
Q ss_pred cccHHHHHhhhhcCCCCCCCCcceeeecc
Q 001355 352 AMSYETYLKMLAKFPGLDNDWDLQLLPIH 380 (1093)
Q Consensus 352 a~T~~tY~k~~~~~PslE~~w~Lq~v~i~ 380 (1093)
+.|.+.-.+ ..+|.+-++++.+.+..+
T Consensus 170 ~n~~d~~~~--~L~~~v~SR~~~~~i~F~ 196 (318)
T 3te6_A 170 GGHNVTIRE--QINIMPSLKAHFTEIKLN 196 (318)
T ss_dssp CCSSCCCHH--HHHTCHHHHTTEEEEECC
T ss_pred ecCcccchh--hcchhhhccCCceEEEeC
Confidence 644332111 223555555554445444
No 185
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.94 E-value=0.092 Score=53.13 Aligned_cols=34 Identities=29% Similarity=0.297 Sum_probs=26.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..+.|.||+|+|||++++.|+... ....+.+|..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d 43 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSD 43 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc---CCCeEEEccc
Confidence 468999999999999999999863 2345666644
No 186
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.92 E-value=0.72 Score=53.58 Aligned_cols=95 Identities=16% Similarity=0.091 Sum_probs=53.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
..+++.||+|+|||++.++|...+......++.+.-.- .-... .+. ..-+.. -.|..+.+.+..+++..| .
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i-e~~~~--~~~--q~~v~~---~~g~~f~~~lr~~Lrq~p-d 238 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI-EFDID--GIG--QTQVNP---RVDMTFARGLRAILRQDP-D 238 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC-CSCCS--SSE--EEECBG---GGTBCHHHHHHHHGGGCC-S
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc-hhccC--Ccc--eEEEcc---ccCcCHHHHHHHHhccCC-C
Confidence 46999999999999999999988854444444333111 00000 000 000011 123455567778888877 5
Q ss_pred EEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 807 VVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 807 VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
+|++.||.. .......+++..+|.
T Consensus 239 ~i~vgEiRd---~et~~~~l~a~~tGh 262 (418)
T 1p9r_A 239 VVMVGEIRD---LETAQIAVQASLTGH 262 (418)
T ss_dssp EEEESCCCS---HHHHHHHHHHHHTTC
T ss_pred eEEEcCcCC---HHHHHHHHHHHHhCC
Confidence 788888754 333333444555553
No 187
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.84 E-value=0.082 Score=59.74 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=26.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
..+++.||+|+|||.||..||+.+ +..+|..|-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~Ds 73 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF---PLEVINSDK 73 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS---CEEEEECCS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC---CCcEEcccc
Confidence 368999999999999999999987 345555553
No 188
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.82 E-value=0.11 Score=53.43 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.|++|+|||++|+.|++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 189
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.82 E-value=0.098 Score=53.16 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=26.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
..++|+|++|+|||++++.|++.++| +..+|+..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g----~~~id~d~ 44 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDG----FQHLEVGK 44 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTT----EEEEEHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC----CEEeeHHH
Confidence 46999999999999999999998432 45566553
No 190
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.79 E-value=0.4 Score=56.86 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=26.0
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHHhccCCCc
Q 001355 725 RGIWLAFLGPDKVGKKKIASALAEIVFGNKGK 756 (1093)
Q Consensus 725 ~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~ 756 (1093)
.+..++|.|++|+|||++++.|+..+......
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~ 323 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKS 323 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCe
Confidence 34689999999999999999999877544333
No 191
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.76 E-value=0.099 Score=51.35 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.|++|+|||++|+.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5899999999999999999 544
No 192
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.73 E-value=0.15 Score=57.88 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=29.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
-.++++||+|+|||++|..++..+.......++++...
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 36899999999999999999876654455666677543
No 193
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.72 E-value=0.23 Score=53.03 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=26.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..++|.||+|+|||++|+.|++.+ .+.+++.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~~ 61 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLSTG 61 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-----CCeEEecH
Confidence 579999999999999999999877 24555554
No 194
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.72 E-value=0.65 Score=51.66 Aligned_cols=40 Identities=13% Similarity=0.240 Sum_probs=30.6
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 725 RGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 725 ~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.+.+++|.|++|+|||+++..||..+-........+++..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 3468999999999999999999987755455555555543
No 195
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.70 E-value=0.11 Score=54.58 Aligned_cols=32 Identities=34% Similarity=0.546 Sum_probs=27.2
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.++|.||||+||++.|+.|++.+ .+.+|+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istGd 33 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGD 33 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHH
Confidence 48899999999999999999987 467777654
No 196
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.53 E-value=0.11 Score=52.75 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=25.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
.++|.|++|+|||++|+.|++.+ + +..+|.+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d 44 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTG 44 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence 68999999999999999999987 2 4556554
No 197
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.52 E-value=0.18 Score=53.30 Aligned_cols=99 Identities=11% Similarity=0.023 Sum_probs=49.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
...+++|+.|+|||+.+..++...-+.....+.+...-..... ...+.. ..|....-.+......+.+.+. .+..
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~g-e~~i~s---~~g~~~~a~~~~~~~~~~~~~~-~~~d 103 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYS-EEDVVS---HNGLKVKAVPVSASKDIFKHIT-EEMD 103 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC---------------------CCEEECSSGGGGGGGCC-SSCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcch-HHHHHh---hcCCeeEEeecCCHHHHHHHHh-cCCC
Confidence 3567899999999988877776665655555555432211000 001110 0011000000000112222222 2467
Q ss_pred EEEEcccccccCHHHHHHHhhhhcC
Q 001355 807 VVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 807 VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
+|+|||+.- ++++....|..+.+.
T Consensus 104 vViIDEaQF-~~~~~V~~l~~l~~~ 127 (214)
T 2j9r_A 104 VIAIDEVQF-FDGDIVEVVQVLANR 127 (214)
T ss_dssp EEEECCGGG-SCTTHHHHHHHHHHT
T ss_pred EEEEECccc-CCHHHHHHHHHHhhC
Confidence 999999999 877666665554443
No 198
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.38 E-value=0.19 Score=51.39 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
..++|.|++|+|||++|+.|++.+-
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999873
No 199
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.34 E-value=0.12 Score=53.37 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=21.2
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.|++|+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 200
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.33 E-value=0.12 Score=51.52 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=20.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
..++|.|++|+|||++|+.|++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh
Confidence 35899999999999999999983
No 201
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.27 E-value=0.64 Score=52.20 Aligned_cols=79 Identities=16% Similarity=0.099 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcccCcc---------HHHHHHHHHHHHHHHhcCCCCC----CCCCCCCeEEEeeCCCCChHHHHHHHH
Q 001355 680 PRDYKTLRIALAEKVGWQ---------DEAICTISQAVSRWRIGNGRDV----GSNSKRGIWLAFLGPDKVGKKKIASAL 746 (1093)
Q Consensus 680 ~e~lk~L~~~L~e~ViGQ---------deai~~Ia~aI~~~rsg~~~~~----~~~~k~~~~LLf~Gp~GvGKT~lAraL 746 (1093)
.+-.+.+.+.+.+++.|+ +..+..+...+........... .+..+.+..+.|.||+|+|||++++.|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~g~vi~lvG~nGaGKTTll~~L 149 (328)
T 3e70_C 70 LEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKL 149 (328)
T ss_dssp HHHHHHHHHHHHHHHTTCEEECC---CHHHHHHHHHHHHHHSCCSSCCCHHHHHHSSCSSEEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHhCCccccchhhhcccCCCCeEEEEECCCCCCHHHHHHHH
Confidence 344566777777776664 2233444444443321111000 001123468999999999999999999
Q ss_pred HHHhccCCCceE
Q 001355 747 AEIVFGNKGKLI 758 (1093)
Q Consensus 747 A~~lfgs~~~fv 758 (1093)
|..+-.......
T Consensus 150 ag~l~~~~g~V~ 161 (328)
T 3e70_C 150 ANWLKNHGFSVV 161 (328)
T ss_dssp HHHHHHTTCCEE
T ss_pred HHHHHhcCCEEE
Confidence 987755444433
No 202
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.26 E-value=0.16 Score=54.72 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=27.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
..++|.|++|+|||++|+.|++.+...+..++.++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 468999999999999999999986433445554554
No 203
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.21 E-value=0.16 Score=51.07 Aligned_cols=33 Identities=27% Similarity=0.175 Sum_probs=25.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEe
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHV 760 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~i 760 (1093)
.+.|.|++|+|||++|+.|++.+-..+-+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 478999999999999999999873223344443
No 204
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.20 E-value=0.37 Score=51.23 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.7
Q ss_pred EEeeCCCCChHHHHHHHHHHHh
Q 001355 729 LAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
++++||+|+|||.+|..++..+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7899999999999998887765
No 205
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.17 E-value=0.11 Score=54.44 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=22.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.|++|+|||++|+.|++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999876
No 206
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.08 E-value=0.62 Score=51.52 Aligned_cols=39 Identities=21% Similarity=0.112 Sum_probs=31.1
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+.+++|.|++|+|||+++..||..+-........+|+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 467888999999999999999988765555666666654
No 207
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.07 E-value=0.18 Score=50.41 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=25.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..++|.|++|+|||++++.|+..+ | ++.+|..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~-g----~~~i~~d 40 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL-H----AAFLDGD 40 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH-T----CEEEEGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh-C----cEEEeCc
Confidence 468999999999999999999876 2 3555544
No 208
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.06 E-value=0.14 Score=51.38 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=22.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.|++|+|||++|+.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 209
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.06 E-value=0.18 Score=51.91 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=25.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..+.|.||+|+|||++++.|+..+ | .+.+|..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~-g----~~~i~~d 61 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET-G----LEFAEAD 61 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-C----CEEEEGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-C----CeEEccc
Confidence 368999999999999999999887 2 3555544
No 210
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.00 E-value=0.14 Score=57.63 Aligned_cols=31 Identities=39% Similarity=0.611 Sum_probs=25.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
.+++.||+|+|||++|+.||+.+ +..++.+|
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l---~~~iis~D 37 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL---PCELISVD 37 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCcEEecc
Confidence 68999999999999999999987 33455554
No 211
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.98 E-value=1.7 Score=50.56 Aligned_cols=121 Identities=15% Similarity=0.135 Sum_probs=84.4
Q ss_pred CCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCc
Q 001355 230 GKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPG 306 (1093)
Q Consensus 230 k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~g 306 (1093)
.|..+|.|-||.| .++.+|... ++.|+.+. .+.++ .++-|+-+.+++++-...+. ..+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~-------------~~~~~~v~--~~~l~--~~~~Ge~e~~ir~lF~~A~~--~aP 266 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST-------------KAAFIRVN--GSEFV--HKYLGEGPRMVRDVFRLARE--NAP 266 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH-------------TCEEEEEE--GGGTC--CSSCSHHHHHHHHHHHHHHH--TCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-------------CCCeEEEe--cchhh--ccccchhHHHHHHHHHHHHH--cCC
Confidence 4678999999998 477777652 57899998 77773 56789999999999888775 568
Q ss_pred EEEEeCcchhhhcCCC-----cchHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCC--CCcce
Q 001355 307 VVVNYGELKVLVSDSV-----STEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDN--DWDLQ 375 (1093)
Q Consensus 307 vil~igdl~~~v~~~~-----~~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~--~w~Lq 375 (1093)
.|+||||+..+..... .......+++++=..+.. ...+.+-+|||| .+ --.-||+|=+ +||.+
T Consensus 267 ~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aT-N~-----~~~LD~AllRpGRfd~~ 337 (428)
T 4b4t_K 267 SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMAT-NR-----ADTLDPALLRPGRLDRK 337 (428)
T ss_dssp EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEE-SC-----SSSCCHHHHSSSSEEEE
T ss_pred CeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEec-CC-----hhhcChhhhcCCcceEE
Confidence 9999999999987532 123445555554444431 124568999984 42 2245777766 66654
No 212
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.97 E-value=0.15 Score=53.83 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=22.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.|++|+|||++|+.||+.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999987
No 213
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.95 E-value=0.13 Score=53.27 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=21.0
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.|++|+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 214
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.92 E-value=0.67 Score=54.08 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=32.4
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccC-CCceEEeecCCc
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGN-KGKLIHVDVSSE 765 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs-~~~fv~id~s~~ 765 (1093)
...++|.|+.|+|||+++-.||..+-.. +.....+|+..+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4578899999999999999999887655 566677787753
No 215
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.92 E-value=0.15 Score=52.27 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=22.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.|++|+|||++|+.|++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999999999876
No 216
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.87 E-value=0.13 Score=53.62 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=22.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.|++|+|||++|+.||+.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999987
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.60 E-value=0.18 Score=52.30 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=28.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc-cCCCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF-GNKGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf-gs~~~fv~id~ 762 (1093)
..++|.|++|+|||++++.|++.+. ..+.+++.+|.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 4689999999999999999999874 22334666763
No 218
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.60 E-value=0.11 Score=54.41 Aligned_cols=24 Identities=13% Similarity=0.136 Sum_probs=22.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.|++|+|||++|+.||+.+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 219
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.47 E-value=0.18 Score=53.33 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=27.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
-.++|.||||+||++.|+.|++.+ .+.+|+.+.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~-----g~~hIstGd 62 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSGD 62 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH-----CCEEECHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-----CCceEcHHH
Confidence 368889999999999999999987 467776653
No 220
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.34 E-value=0.18 Score=56.30 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=26.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
..+++.||+|+|||.+|..||+.+ ...+|..|.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds 43 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL---PVELISVDS 43 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS---CEEEEECCT
T ss_pred cEEEEECCCccCHHHHHHHHHHhC---CCcEEeccc
Confidence 468899999999999999999987 334555553
No 221
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.30 E-value=0.28 Score=55.82 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=29.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
.++++|++|+|||.+|..++..+.......+.+|..
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 689999999999999999887765555567777764
No 222
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.28 E-value=0.16 Score=52.12 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=22.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.|++|+|||++|+.|++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999986
No 223
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.27 E-value=0.91 Score=48.24 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=57.8
Q ss_pred CCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCc
Q 001355 230 GKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPG 306 (1093)
Q Consensus 230 k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~g 306 (1093)
.++.+|+|++|.| .++.++.... ..++.++ ...+.. .+.++.+.+++++-..... ..+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~-------------~~~~~i~--~~~~~~--~~~~~~~~~~~~~~~~a~~--~~~ 105 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK-------------VPFFTIS--GSDFVE--MFVGVGASRVRDMFEQAKK--AAP 105 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT-------------CCEEEEC--SCSSTT--SCCCCCHHHHHHHHHHHHT--TCS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC-------------CCEEEEe--HHHHHH--HhhhhhHHHHHHHHHHHHH--cCC
Confidence 4567899999998 3666665531 2355555 333321 1223445566666655543 457
Q ss_pred EEEEeCcchhhhcCCCc-----chHHHHHHHHHHhhhcC-CCCCcEEEEEec
Q 001355 307 VVVNYGELKVLVSDSVS-----TEAARFVVSQLTSLLKS-GNGEKLWLIGAA 352 (1093)
Q Consensus 307 vil~igdl~~~v~~~~~-----~~~~~~~v~el~~Ll~~-~~~g~lwliG~a 352 (1093)
.|+|++|++.+...... .......+.++-..+.. .....+.+|+++
T Consensus 106 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t 157 (257)
T 1lv7_A 106 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT 157 (257)
T ss_dssp EEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEE
T ss_pred eeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEee
Confidence 89999999888764321 11122233332222221 123568999974
No 224
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.25 E-value=0.16 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=22.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+.|.|++|+|||++|+.|++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999976
No 225
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.20 E-value=0.17 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=21.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.|++|+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999977
No 226
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.00 E-value=0.18 Score=51.23 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=21.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+.|.|++|+|||++++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999987
No 227
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.00 E-value=1.6 Score=46.69 Aligned_cols=148 Identities=16% Similarity=0.138 Sum_probs=79.8
Q ss_pred CCchhhHHHHHHH-------hhcccccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhh
Q 001355 209 DDVDENCRRIGEV-------LAGRDEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEF 278 (1093)
Q Consensus 209 ~~rdeeirrv~~v-------L~R~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~ 278 (1093)
.+.++.++.+++. +.....+..++.+|.|++|+| .++.++... +..++.+. .+..
T Consensus 36 i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~-------------~~~~~~i~--~~~~ 100 (272)
T 1d2n_A 36 IKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES-------------NFPFIKIC--SPDK 100 (272)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH-------------TCSEEEEE--CGGG
T ss_pred CCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh-------------CCCEEEEe--CHHH
Confidence 3566666666663 321011445688899999998 366666652 23355554 3222
Q ss_pred hcCCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCc-chHHHHHHHHHHhhhcCC--CCCcEEEEEecccH
Q 001355 279 VGGRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVS-TEAARFVVSQLTSLLKSG--NGEKLWLIGAAMSY 355 (1093)
Q Consensus 279 ~a~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~-~~~~~~~v~el~~Ll~~~--~~g~lwliG~a~T~ 355 (1093)
+.| ....+...++.++...... ..+.||+|||+..+++.... ......+...|-.++... .+..+.+|++ |..
T Consensus 101 ~~g-~~~~~~~~~~~~~~~~~~~--~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~t-tn~ 176 (272)
T 1d2n_A 101 MIG-FSETAKCQAMKKIFDDAYK--SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGT-TSR 176 (272)
T ss_dssp CTT-CCHHHHHHHHHHHHHHHHT--SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEE-ESC
T ss_pred hcC-CchHHHHHHHHHHHHHHHh--cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEe-cCC
Confidence 222 2345555566665554442 56889999999999875321 111223333444455421 2346888887 355
Q ss_pred HHHHhhhhcCCCCCCCCcceeeecc
Q 001355 356 ETYLKMLAKFPGLDNDWDLQLLPIH 380 (1093)
Q Consensus 356 ~tY~k~~~~~PslE~~w~Lq~v~i~ 380 (1093)
...+.- ..+..+|+.. +.+|
T Consensus 177 ~~~l~~----~~l~~rf~~~-i~~p 196 (272)
T 1d2n_A 177 KDVLQE----MEMLNAFSTT-IHVP 196 (272)
T ss_dssp HHHHHH----TTCTTTSSEE-EECC
T ss_pred hhhcch----hhhhcccceE-EcCC
Confidence 443221 1455666433 3444
No 228
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.86 E-value=0.16 Score=50.85 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=18.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.|++|+|||++|+.|++.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999999876
No 229
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.74 E-value=0.26 Score=49.82 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=21.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
.+.|.|++|+|||++++.|++.+-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999874
No 230
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.67 E-value=0.29 Score=55.88 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=28.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.++++|++|+|||.+|..++..+.....+.++++...
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 5788999999999999988876654455667777653
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.66 E-value=0.17 Score=52.15 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=22.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.||+|+|||++++.|++.+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999999876
No 232
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.61 E-value=0.18 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+.|.||+|+|||++++.|++.+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 468999999999999999999875
No 233
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.56 E-value=0.95 Score=53.81 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=28.7
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
...++|.|++|+|||+++..||..+-........+++.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 45799999999999999999998765444455556654
No 234
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.54 E-value=0.75 Score=47.97 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=27.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
.+++++++|.|||+.|-.+|-...|.......+.
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5888999999999999999887777766655553
No 235
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.54 E-value=0.19 Score=51.20 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=22.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+.|.|++|+|||++++.|++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999999999976
No 236
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.36 E-value=0.22 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-.+.|.||+|+|||++++.|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 368999999999999999999874
No 237
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.30 E-value=0.7 Score=53.89 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=30.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE 765 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~ 765 (1093)
..++|.|++|+|||+++..||..+...+.....+++..+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 479999999999999999999877544445566666543
No 238
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.26 E-value=0.23 Score=52.16 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=21.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.|++|+|||++|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999977
No 239
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.16 E-value=0.2 Score=51.07 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=22.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+.|.||+|+|||++++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999876
No 240
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.07 E-value=0.23 Score=55.61 Aligned_cols=31 Identities=39% Similarity=0.624 Sum_probs=24.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
.+++.||+|+|||.+|..||+.+ ...+|..|
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~---~~~iis~D 35 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL---NGEVISGD 35 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT---TEEEEECC
T ss_pred EEEEECCCcCCHHHHHHHHHHhC---ccceeecC
Confidence 58899999999999999999987 23444444
No 241
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.05 E-value=1.5 Score=51.08 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=31.5
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+.+++|.|+.|+|||+++..||..+-........+|+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 457888899999999999999988866566666677654
No 242
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.74 E-value=0.3 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
..+.+.||+|+|||++++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999999874
No 243
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.68 E-value=1.2 Score=49.84 Aligned_cols=125 Identities=8% Similarity=0.067 Sum_probs=72.2
Q ss_pred CCchhhHHHHHHHhhccc-ccCCC--CcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhh----
Q 001355 209 DDVDENCRRIGEVLAGRD-EKKGK--NPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEF---- 278 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~~-~~~k~--NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~---- 278 (1093)
.||++++.++.+.|.+-- ++..+ +.+|+|.+|+| .++.++..+.... +..++.++ ....
T Consensus 20 ~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~---------~~~~~~i~--~~~~~~~~ 88 (389)
T 1fnn_A 20 PHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT---------TARFVYIN--GFIYRNFT 88 (389)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC---------CCEEEEEE--TTTCCSHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc---------CeeEEEEe--CccCCCHH
Confidence 589999999999887410 12234 78999999998 3777777765421 45566555 1110
Q ss_pred --h-------c-----CCccHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCC-
Q 001355 279 --V-------G-----GRVNVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNG- 343 (1093)
Q Consensus 279 --~-------a-----~~~~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~- 343 (1093)
+ . .....+++-.+ +...+... ++++||+|||++|+ .. .....|.+++....+
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~---l~~~l~~~-~~~~vlilDE~~~l-----~~----~~~~~L~~~~~~~~~~ 155 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLAL---LVEHLRER-DLYMFLVLDDAFNL-----AP----DILSTFIRLGQEADKL 155 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHH---HHHHHHHT-TCCEEEEEETGGGS-----CH----HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHH---HHHHHhhc-CCeEEEEEECcccc-----ch----HHHHHHHHHHHhCCCC
Confidence 0 0 01123333333 33333333 67899999999999 11 223355566542112
Q ss_pred --CcEEEEEecccHHHH
Q 001355 344 --EKLWLIGAAMSYETY 358 (1093)
Q Consensus 344 --g~lwliG~a~T~~tY 358 (1093)
.++.+|+++ +...+
T Consensus 156 ~~~~~~iI~~~-~~~~~ 171 (389)
T 1fnn_A 156 GAFRIALVIVG-HNDAV 171 (389)
T ss_dssp SSCCEEEEEEE-SSTHH
T ss_pred CcCCEEEEEEE-CCchH
Confidence 478888874 44333
No 244
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=88.66 E-value=0.61 Score=51.41 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=22.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
..+.+.|++|+|||++|+.|++.+-
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5789999999999999999998874
No 245
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=88.59 E-value=0.26 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-.+.|.||+|+|||++++.|+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999865
No 246
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.38 E-value=1 Score=48.65 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=70.9
Q ss_pred CCchhhHHHHHHHhhc-----------ccccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeech
Q 001355 209 DDVDENCRRIGEVLAG-----------RDEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYE 274 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R-----------~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e 274 (1093)
.|.++.++.+...+.+ +..+..++.+|+|++|+| .++.++..+ +..++.++
T Consensus 18 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l-------------~~~~~~i~-- 82 (310)
T 1ofh_A 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA-------------NAPFIKVE-- 82 (310)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH-------------TCCEEEEE--
T ss_pred CChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh-------------CCCEEEEc--
Confidence 4677777777776653 112346789999999998 477777665 23466666
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHH----hhccCCCcEEEEeCcchhhhcCCCc--chH-HHHHHHHHHhhhcCC------
Q 001355 275 INEFVGGRVNVEMMMLKFKEVESA----VGRCSGPGVVVNYGELKVLVSDSVS--TEA-ARFVVSQLTSLLKSG------ 341 (1093)
Q Consensus 275 ~~~~~a~~~~r~e~e~rlkel~~~----v~~~~~~gvil~igdl~~~v~~~~~--~~~-~~~~v~el~~Ll~~~------ 341 (1093)
.+.+........+.+..++++... ++.. +.+.||+|||++.+...... .+. ...+...+-++|...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~ 161 (310)
T 1ofh_A 83 ATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAV-EQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH 161 (310)
T ss_dssp GGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHH-HHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETT
T ss_pred chhcccCCccCccHHHHHHHHHHHhhHHHhhc-cCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEeccc
Confidence 555532111122233344444431 2211 23679999999999875421 122 222334455555411
Q ss_pred ---CCCcEEEEEe
Q 001355 342 ---NGEKLWLIGA 351 (1093)
Q Consensus 342 ---~~g~lwliG~ 351 (1093)
....+.+|++
T Consensus 162 ~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 162 GMVKTDHILFIAS 174 (310)
T ss_dssp EEEECTTCEEEEE
T ss_pred ccccCCcEEEEEc
Confidence 1136788887
No 247
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.31 E-value=0.7 Score=51.03 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=30.0
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhcc-CCCceEEeecCC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFG-NKGKLIHVDVSS 764 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfg-s~~~fv~id~s~ 764 (1093)
+..++|.|++|+|||+++..||..+.. .+.....+++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 347899999999999999999987753 444555566554
No 248
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.24 E-value=0.31 Score=50.33 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=26.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
-.++++||+|+|||++++.|+..+.......+.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 368899999999999999999765443444455554
No 249
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.23 E-value=0.61 Score=51.77 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=26.4
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceE
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLI 758 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv 758 (1093)
+-.+.|.||+|+|||++++.||..+-.......
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~ 134 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 134 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE
Confidence 357899999999999999999988765444433
No 250
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.21 E-value=0.28 Score=55.43 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=21.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+++.||+|+|||++|+.||+.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 68999999999999999999987
No 251
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.06 E-value=0.41 Score=51.69 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 696 WQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 696 GQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+...++..+.-.|.....| -.+.|.|++|+|||++++.||+.+
T Consensus 30 ~~~~~l~~~~~~i~~~l~g------------~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNG------------RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTT------------CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCC------------CEEEEECCCCCCHHHHHHHHHHhc
Confidence 3445666666666554321 149999999999999999999987
No 252
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.77 E-value=0.67 Score=52.61 Aligned_cols=95 Identities=16% Similarity=0.246 Sum_probs=52.2
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC-CccccCCCCccccCCCccc-ccc--c-cccchhhhHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS-SEQRVSQPNSIFDCQNIDF-CDC--K-LRGKVLVDYIYQEFRS 802 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s-~~~~~~~~~si~~~~~l~G-~~~--g-~~g~~~~~~l~eal~~ 802 (1093)
.+++.||+|+|||++.++|+..+-. ..-.|.++-. .+......+.+ .++. ... + +.+.+..+.+..+++.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~~~e~~~~~~~~~v----~~v~~q~~~~~~~~~~t~~~~i~~~l~~ 251 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPF-DQRLITIEDVPELFLPDHPNHV----HLFYPSEAKEEENAPVTAATLLRSCLRM 251 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEESSSCCCCTTCSSEE----EEECC----------CCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECCccccCccccCCEE----EEeecCccccccccccCHHHHHHHHHhc
Confidence 5899999999999999999987643 3345666522 11100000000 1111 111 1 1122444666667766
Q ss_pred CCceEEEEcccccccCHHHHHHHhhhhcCC
Q 001355 803 KPYSVVFLEDLDKAADPIVQSSLTKAISTG 832 (1093)
Q Consensus 803 ~p~~VI~LDEVDkiad~~vq~~Ll~aLe~G 832 (1093)
.| .+++++|+.. + ++.. +++.+.+|
T Consensus 252 ~p-d~~l~~e~r~-~--~~~~-~l~~l~~g 276 (361)
T 2gza_A 252 KP-TRILLAELRG-G--EAYD-FINVAASG 276 (361)
T ss_dssp CC-SEEEESCCCS-T--HHHH-HHHHHHTT
T ss_pred CC-CEEEEcCchH-H--HHHH-HHHHHhcC
Confidence 66 4788899876 3 3444 56667766
No 253
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=87.77 E-value=0.28 Score=50.16 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=19.9
Q ss_pred EEEeeCCCCChHHHHHHHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
.+.+.|++|+|||++++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 488999999999999999998
No 254
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=87.67 E-value=0.29 Score=49.46 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+.|.||+|+|||++++.|+...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 58899999999999999999743
No 255
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=87.67 E-value=0.32 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=22.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|.||+|+|||++++.|++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999876
No 256
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=87.54 E-value=0.36 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+.|.||+|+|||++++.|++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 257
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=87.53 E-value=0.34 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=21.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
..+.+.|++|+|||++|+.|++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 57999999999999999999985
No 258
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.53 E-value=0.36 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+.+.|++|+|||++|+.||+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999977
No 259
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=87.42 E-value=0.44 Score=50.96 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=26.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
..+.+.||+|+|||++|+.|++.+ .+..+|.+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l-----g~~~~d~g~ 42 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL-----GARYLDTGA 42 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCCc
Confidence 579999999999999999999987 245566543
No 260
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.33 E-value=0.31 Score=51.13 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=25.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
..++|.||+|+|||.+|.+|++..+ .+|..|.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~----~iIsdDs 66 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH----RLIADDR 66 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC----EEEESSE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC----eEEecch
Confidence 4689999999999999999998752 5555553
No 261
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=87.32 E-value=2.3 Score=47.89 Aligned_cols=141 Identities=11% Similarity=0.043 Sum_probs=72.0
Q ss_pred CCchhhHHHHHHHh-hccccc---CCCCcEE--eccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeec-h---h
Q 001355 209 DDVDENCRRIGEVL-AGRDEK---KGKNPLL--VGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEY-E---I 275 (1093)
Q Consensus 209 ~~rdeeirrv~~vL-~R~~~~---~k~Npvl--VGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~-e---~ 275 (1093)
.||++++.++.+.| .+-... +.++.+| +|.+|+| .++.++..+....... =.+..++.+.- + .
T Consensus 25 ~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 25 RVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKE----GLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHT----TCCEEEEEEEGGGCCSH
T ss_pred CChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhcc----CCceeEEEEECCCCCCH
Confidence 58999999999998 420002 2345666 6999998 3677776654310000 01344555541 0 0
Q ss_pred hhhh----c--CC-cc-HH-HHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCC-cchHHHHHHHHHHhhhcCCC--C
Q 001355 276 NEFV----G--GR-VN-VE-MMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSV-STEAARFVVSQLTSLLKSGN--G 343 (1093)
Q Consensus 276 ~~~~----a--~~-~~-r~-e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~-~~~~~~~~v~el~~Ll~~~~--~ 343 (1093)
..++ . |. .. ++ ..+.-+..+...+... ++++||+|||++|+..... .... ...+.+++.... +
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~llvlDe~~~l~~~~~~~~~~----l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE-NHYLLVILDEFQSMLSSPRIAAED----LYTLLRVHEEIPSRD 175 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHH-TCEEEEEEESTHHHHSCTTSCHHH----HHHHHTHHHHSCCTT
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHhhccCcchHH----HHHHHHHHHhcccCC
Confidence 0010 0 00 00 00 1122233344444433 6799999999999986421 1112 223344443122 3
Q ss_pred --CcEEEEEecccHHHHH
Q 001355 344 --EKLWLIGAAMSYETYL 359 (1093)
Q Consensus 344 --g~lwliG~a~T~~tY~ 359 (1093)
.++-+|+++ +....+
T Consensus 176 ~~~~v~lI~~~-~~~~~~ 192 (412)
T 1w5s_A 176 GVNRIGFLLVA-SDVRAL 192 (412)
T ss_dssp SCCBEEEEEEE-EETHHH
T ss_pred CCceEEEEEEe-ccccHH
Confidence 688899874 544443
No 262
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.06 E-value=0.49 Score=49.44 Aligned_cols=37 Identities=14% Similarity=-0.022 Sum_probs=28.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..+++.||+|+|||.++..++..+.......++++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3689999999999999998877665445556666654
No 263
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.89 E-value=0.39 Score=55.52 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=25.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
.+++.||+|+|||.+|..||+.+- ..+|..|
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~---~~iis~D 34 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN---GEVINSD 34 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT---EEEEECC
T ss_pred EEEEECcchhhHHHHHHHHHHHCC---CeEeecC
Confidence 588999999999999999999873 3455544
No 264
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=86.81 E-value=1.1 Score=49.21 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=69.5
Q ss_pred CCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCC
Q 001355 229 KGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGP 305 (1093)
Q Consensus 229 ~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~ 305 (1093)
..++.+|.|.+|.| .++.++... +..++.++ .+.++. .+-++.+.++.++-..... ..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~-------------~~~~i~v~--~~~l~~--~~~g~~~~~~~~~f~~a~~--~~ 108 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC-------------QANFISIK--GPELLT--MWFGESEANVREIFDKARQ--AA 108 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT-------------TCEEEEEC--HHHHHH--HHHTTCTTHHHHHHHHHHH--TC
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh-------------CCCEEEEE--hHHHHh--hhcCchHHHHHHHHHHHHh--cC
Confidence 35678999999998 366666653 24577776 544431 2234445566666655543 45
Q ss_pred cEEEEeCcchhhhcCCC-----cchHHHHHHHHHHhhhcC-CCCCcEEEEEecccHHHHHhhhhcCCCCCC--CCc
Q 001355 306 GVVVNYGELKVLVSDSV-----STEAARFVVSQLTSLLKS-GNGEKLWLIGAAMSYETYLKMLAKFPGLDN--DWD 373 (1093)
Q Consensus 306 gvil~igdl~~~v~~~~-----~~~~~~~~v~el~~Ll~~-~~~g~lwliG~a~T~~tY~k~~~~~PslE~--~w~ 373 (1093)
+.||||||+.-+..... ..+..+.++.++-+.+.. .....+.+||+| ... -.-+|++-+ +++
T Consensus 109 p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~at-n~~-----~~ld~al~r~gRf~ 178 (301)
T 3cf0_A 109 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT-NRP-----DIIDPAILRPGRLD 178 (301)
T ss_dssp SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEE-SCG-----GGSCGGGGSTTSSC
T ss_pred CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEec-CCc-----cccChHHhcCCccc
Confidence 78999999998875311 112223344444444432 124579999984 432 123566554 554
No 265
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=86.76 E-value=0.39 Score=49.42 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=22.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+.+.||+|+|||++++.|+..+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999986
No 266
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=86.76 E-value=0.64 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|.|++|+|||++++.||..+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999999999987
No 267
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.66 E-value=1.5 Score=42.52 Aligned_cols=108 Identities=12% Similarity=0.026 Sum_probs=58.8
Q ss_pred CCchhhHHHHHHHhhcccccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccH
Q 001355 209 DDVDENCRRIGEVLAGRDEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNV 285 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r 285 (1093)
+|+++.++++.+.+.+ -.+...|.+|.|++|.| .++.+.....+ .+..++ ++ .+.+....
T Consensus 4 iG~s~~~~~~~~~~~~-~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~----------~~~~~v-~~--~~~~~~~~--- 66 (145)
T 3n70_A 4 IGRSEWINQYRRRLQQ-LSETDIAVWLYGAPGTGRMTGARYLHQFGRN----------AQGEFV-YR--ELTPDNAP--- 66 (145)
T ss_dssp CCSSHHHHHHHHHHHH-HTTCCSCEEEESSTTSSHHHHHHHHHHSSTT----------TTSCCE-EE--ECCTTTSS---
T ss_pred eeCCHHHHHHHHHHHH-HhCCCCCEEEECCCCCCHHHHHHHHHHhCCc----------cCCCEE-EE--CCCCCcch---
Confidence 4678888888877652 01346789999999998 35555544222 133455 55 44332221
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEEEeccc
Q 001355 286 EMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLIGAAMS 354 (1093)
Q Consensus 286 ~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwliG~a~T 354 (1093)
++...++.. .+| +|||+|+..+-. ... ..|-+++. .....+++|+++ +
T Consensus 67 --------~~~~~~~~a-~~g-~l~ldei~~l~~-----~~q----~~Ll~~l~-~~~~~~~~I~~t-~ 114 (145)
T 3n70_A 67 --------QLNDFIALA-QGG-TLVLSHPEHLTR-----EQQ----YHLVQLQS-QEHRPFRLIGIG-D 114 (145)
T ss_dssp --------CHHHHHHHH-TTS-CEEEECGGGSCH-----HHH----HHHHHHHH-SSSCSSCEEEEE-S
T ss_pred --------hhhcHHHHc-CCc-EEEEcChHHCCH-----HHH----HHHHHHHh-hcCCCEEEEEEC-C
Confidence 111122221 223 689999987632 111 23334444 233568899983 5
No 268
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.62 E-value=0.44 Score=49.37 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
..+.|.|++|+|||++++.|++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999998
No 269
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=86.57 E-value=0.54 Score=50.38 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=26.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
..+.+.||+|+|||++++.|++.+ .+..+|.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L-----g~~~~d~g~ 60 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL-----NWRLLDSGA 60 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT-----TCEEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc-----CCCcCCCCc
Confidence 468999999999999999999877 245556543
No 270
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=86.45 E-value=0.45 Score=49.18 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=27.3
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
...+.++|+.|+|||++|+.|++.+ | +..+|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l-g----~~vid~D~ 45 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY-G----AHVVNVDR 45 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH-C----CEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-C----CEEEECcH
Confidence 3679999999999999999999975 2 34566554
No 271
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.37 E-value=1.4 Score=52.37 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=53.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC-ccccCCCCccc-cCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS-EQRVSQPNSIF-DCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~-~~~~~~~~si~-~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
.+++.||+|+|||++.++|+..+.. ....+.++-.. +.. ...+.+. ....-+ +..+.++.+.+..+++.+|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~-~~giitied~~E~~~-~~~~~v~~~~r~~~----~~~~~~~~~~l~~~LR~~P- 334 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPP-DAKVVSIEDTREIKL-YHENWIAEVTRTGM----GEGEIDMYDLLRAALRQRP- 334 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEEESSCCCCC-CCSSEEEEECBCCS----SSCCBCHHHHHHTTGGGCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC-CCCEEEEcCcccccC-CCCCeEEEEeeccc----ccCCcCHHHHHHHhhccCC-
Confidence 4899999999999999999987743 34455554221 110 0000000 000000 1011244456667788777
Q ss_pred eEEEEcccccccCHHHHHHHhhhhcCCe
Q 001355 806 SVVFLEDLDKAADPIVQSSLTKAISTGK 833 (1093)
Q Consensus 806 ~VI~LDEVDkiad~~vq~~Ll~aLe~Gr 833 (1093)
.+|++.|+-- . +.. .+++++.+|.
T Consensus 335 D~iivgEir~-~--E~~-~~l~a~~tGh 358 (511)
T 2oap_1 335 DYIIVGEVRG-R--EAQ-TLFQAMSTGH 358 (511)
T ss_dssp SEEEESCCCS-T--HHH-HHHHHHHTTC
T ss_pred CeEEeCCcCH-H--HHH-HHHHhhcCCC
Confidence 5678899865 3 343 4566777663
No 272
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=86.36 E-value=1.3 Score=51.85 Aligned_cols=106 Identities=9% Similarity=0.095 Sum_probs=61.8
Q ss_pred CchhhH---HHHHHHhhcccccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCc
Q 001355 210 DVDENC---RRIGEVLAGRDEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRV 283 (1093)
Q Consensus 210 ~rdeei---rrv~~vL~R~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~ 283 (1093)
|.++-+ +.+...+.. .+-.+.+|.|++|+| .++.++..+ +..++.+. . ...
T Consensus 30 Gq~~~~~~~~~L~~~i~~---~~~~~vLL~GppGtGKTtlAr~ia~~~-------------~~~f~~l~--a-----~~~ 86 (447)
T 3pvs_A 30 GQQHLLAAGKPLPRAIEA---GHLHSMILWGPPGTGKTTLAEVIARYA-------------NADVERIS--A-----VTS 86 (447)
T ss_dssp SCHHHHSTTSHHHHHHHH---TCCCEEEEECSTTSSHHHHHHHHHHHT-------------TCEEEEEE--T-----TTC
T ss_pred CcHHHHhchHHHHHHHHc---CCCcEEEEECCCCCcHHHHHHHHHHHh-------------CCCeEEEE--e-----ccC
Confidence 455555 455555555 455788999999998 356666553 23455554 1 122
Q ss_pred cHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEEEec
Q 001355 284 NVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLIGAA 352 (1093)
Q Consensus 284 ~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwliG~a 352 (1093)
..+++...+........ .+.+.||||||++.+-...- ..+-+.+. .|.+.+||+|
T Consensus 87 ~~~~ir~~~~~a~~~~~--~~~~~iLfIDEI~~l~~~~q---------~~LL~~le---~~~v~lI~at 141 (447)
T 3pvs_A 87 GVKEIREAIERARQNRN--AGRRTILFVDEVHRFNKSQQ---------DAFLPHIE---DGTITFIGAT 141 (447)
T ss_dssp CHHHHHHHHHHHHHHHH--TTCCEEEEEETTTCC---------------CCHHHHH---TTSCEEEEEE
T ss_pred CHHHHHHHHHHHHHhhh--cCCCcEEEEeChhhhCHHHH---------HHHHHHHh---cCceEEEecC
Confidence 34455555555444333 36789999999998854321 12233333 4789999984
No 273
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=86.13 E-value=0.36 Score=49.05 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=21.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+.|.||+|+|||++++.|+..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999876
No 274
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=86.10 E-value=0.72 Score=48.84 Aligned_cols=26 Identities=19% Similarity=0.492 Sum_probs=23.5
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
+..+.|.|++|+|||++++.|++.+-
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35789999999999999999999884
No 275
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=86.03 E-value=0.4 Score=49.21 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.8
Q ss_pred EEEeeCCCCChHHHHHHHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
.+.|.|++|+|||++++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999997
No 276
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=86.03 E-value=0.62 Score=46.63 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=23.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNK 754 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~ 754 (1093)
-.+.|.||.|+|||++.+.|+..+ +..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l-~~~ 60 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI-GHQ 60 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC-CCC
Confidence 468999999999999999999988 543
No 277
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=85.96 E-value=0.54 Score=50.19 Aligned_cols=24 Identities=13% Similarity=0.400 Sum_probs=22.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+.+.|++|+|||++|+.|++.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999976
No 278
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=85.94 E-value=0.41 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=21.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+.|.||+|+|||++.+.|...+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999875
No 279
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.71 E-value=2 Score=48.09 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.3
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
...+.+.||+|+|||++++.|+..+-
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999998873
No 280
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=85.63 E-value=0.82 Score=47.63 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=25.4
Q ss_pred EEEeeCCCCChHH-HHHHHHHHHhccCCCceEEee
Q 001355 728 WLAFLGPDKVGKK-KIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT-~lAraLA~~lfgs~~~fv~id 761 (1093)
-.+++||.|+||| .|.+++.+..... ...+.+.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~-~kvl~~k 55 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVIK 55 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEc
Confidence 5778999999999 8999999877654 4444454
No 281
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.24 E-value=1.2 Score=60.93 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=31.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
-.++|+||+|+|||++|.+++..-.......+.+++..
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee 1119 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1119 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccc
Confidence 47999999999999999988876666666777777765
No 282
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=85.21 E-value=1.5 Score=47.98 Aligned_cols=73 Identities=8% Similarity=0.004 Sum_probs=45.7
Q ss_pred CCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhcc--CCC
Q 001355 231 KNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRC--SGP 305 (1093)
Q Consensus 231 ~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~--~~~ 305 (1093)
+..+|.|.||+| .++.++..+ |..++.++ .+.++. .+-|+.+.+++++-...... ...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l-------------~~~~i~v~--~~~l~~--~~~g~~~~~i~~~f~~a~~~~~~~~ 99 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM-------------GINPIMMS--AGELES--GNAGEPAKLIRQRYREAAEIIRKGN 99 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH-------------TCCCEEEE--HHHHHC--C---HHHHHHHHHHHHHHHHHTTSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-------------CCCEEEEe--HHHhhh--ccCchhHHHHHHHHHHHHHHHhcCC
Confidence 455667999998 377777664 46688888 777743 35577777777766555110 256
Q ss_pred cEEEEeCcchhhhcC
Q 001355 306 GVVVNYGELKVLVSD 320 (1093)
Q Consensus 306 gvil~igdl~~~v~~ 320 (1093)
+.||||||+..+.+.
T Consensus 100 ~~vl~iDEiD~~~~~ 114 (293)
T 3t15_A 100 MCCLFINDLDAGAGR 114 (293)
T ss_dssp CCCEEEECCC-----
T ss_pred CeEEEEechhhhcCC
Confidence 889999999998873
No 283
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.16 E-value=0.63 Score=47.72 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=26.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..+++.||+|+|||.+++.|+. . .....+.++..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~-~--~~~~v~~i~~~ 54 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL-L--SGKKVAYVDTE 54 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-H--HCSEEEEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHH-H--cCCcEEEEECC
Confidence 3689999999999999999997 2 23455666654
No 284
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.97 E-value=0.77 Score=47.84 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=28.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhcc------CCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFG------NKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfg------s~~~fv~id~s~ 764 (1093)
-.++|+||+|+|||.+++.|+....- .....++++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 46899999999999999999985321 134566676543
No 285
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=84.95 E-value=0.85 Score=50.44 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=27.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc--cCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF--GNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf--gs~~~fv~id~s~ 764 (1093)
..+.+.||+|+|||++++.|+..+- .....+..+++..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 5789999999999999999998774 2233344455443
No 286
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=84.93 E-value=0.64 Score=56.67 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=29.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
..++|.|.+|+|||++|++|++.+...+.+++.+|
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 57999999999999999999999865555677765
No 287
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=84.66 E-value=1.2 Score=54.35 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=19.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGK 756 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~ 756 (1093)
..++.||||||||+++-.+...+...+..
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ 235 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLK 235 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCe
Confidence 47999999999998655444444333333
No 288
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=84.30 E-value=0.71 Score=48.29 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=19.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
-.+.+.||+|+|||++++.|+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 3689999999999999999984
No 289
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=84.29 E-value=0.45 Score=48.89 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=26.5
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
...+.+.|++|+|||++|+.|++.+. .+..++...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~ 55 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDD 55 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCc
Confidence 35789999999999999999997641 244555543
No 290
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.27 E-value=0.3 Score=50.12 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+.|.|++|+|||++++.|++.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987
No 291
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=84.26 E-value=0.59 Score=48.23 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=22.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-.+.|.||+|+|||++++.|+..+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999876
No 292
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=84.18 E-value=2 Score=51.66 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=28.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccC----CCceEEeecCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGN----KGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs----~~~fv~id~s~ 764 (1093)
++|+.|.+|+|||.+.+.|...+.-. .-.|+.||...
T Consensus 216 HlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred eeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 59999999999999999876654332 23478888764
No 293
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=84.15 E-value=0.84 Score=47.10 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-.+.+.||+|+|||++++.|+..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999754
No 294
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=83.88 E-value=0.64 Score=48.46 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-.+.|.||+|+|||+|++.|.+..
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 368899999999999999999764
No 295
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=83.87 E-value=0.76 Score=55.55 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=29.7
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCC-CceEEeecC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNK-GKLIHVDVS 763 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~-~~fv~id~s 763 (1093)
+..++|.|.+|+|||++|++|++.+.... .+++.+|..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 35799999999999999999999885322 456667643
No 296
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=83.82 E-value=0.71 Score=49.02 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=22.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+.+.||.|+|||++++.|+..+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999876
No 297
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=83.79 E-value=0.62 Score=48.12 Aligned_cols=24 Identities=38% Similarity=0.509 Sum_probs=22.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+.+.|++|+|||++++.|++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999999999999999976
No 298
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=83.78 E-value=3.8 Score=45.03 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=30.4
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+-++.|.|+.|+|||+++..||..+-........+|+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 357888899999999999999988765555666666543
No 299
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=83.70 E-value=0.83 Score=45.78 Aligned_cols=19 Identities=21% Similarity=0.400 Sum_probs=17.3
Q ss_pred eEEEeeCCCCChHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASA 745 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAra 745 (1093)
-.+.+.||+|+|||++++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4689999999999999994
No 300
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=83.69 E-value=0.46 Score=52.31 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=25.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE 765 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~ 765 (1093)
..+.+.||.|+|||++|+.|++.+-.....+..+++..+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 468999999999999999999876322223556676653
No 301
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=83.59 E-value=1.9 Score=48.55 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=29.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..+.|.|++|+|||+++..|+..+.........+++.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 4689999999999999999998876655565555554
No 302
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=83.46 E-value=0.64 Score=50.63 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=25.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
.++|.|++|+|||++|+.|++.+. .+..++..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~----~~~~i~~D 35 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNP----GFYNINRD 35 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHST----TEEEECHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC----CcEEeccc
Confidence 589999999999999999998531 24555554
No 303
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=83.26 E-value=0.62 Score=48.79 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+.|.||+|+|||++++.|+..+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999876
No 304
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=83.24 E-value=0.75 Score=46.02 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGN 753 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs 753 (1093)
..+|+||+|+|||.+.++|.-.+++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 68999999999999999999888654
No 305
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=83.12 E-value=0.63 Score=48.02 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+|+|.||+|+||++|++.|.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999987664
No 306
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=82.81 E-value=1.2 Score=46.85 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=23.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGN 753 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs 753 (1093)
..+.|.|++|+|||++++.|++.+-..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999988433
No 307
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=82.59 E-value=0.76 Score=48.46 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.4
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+-.+.+.||+|+|||++.+.|+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3478999999999999999999876
No 308
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=82.00 E-value=1.7 Score=45.99 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=48.7
Q ss_pred eEEEeeCCCCChHHH-HHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 727 IWLAFLGPDKVGKKK-IASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~-lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
...+++||-|+|||+ +.+.+.+.... ....+.+....... .....+... .|....-.--.....+.+.+ ..+.
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~-g~kvli~kp~~D~R-~~~~~I~Sr---~G~~~~a~~v~~~~di~~~i-~~~~ 102 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYA-KQKVVVFKPAIDDR-YHKEKVVSH---NGNAIEAINISKASEIMTHD-LTNV 102 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEEC------------CB---TTBCCEEEEESSGGGGGGSC-CTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCceEEEEeccCCc-chhhhHHHh---cCCceeeEEeCCHHHHHHHH-hcCC
Confidence 467899999999998 55665555433 33434343221100 000011100 01000000000011222222 2355
Q ss_pred eEEEEcccccccCHHHHHHHhhhhcCC
Q 001355 806 SVVFLEDLDKAADPIVQSSLTKAISTG 832 (1093)
Q Consensus 806 ~VI~LDEVDkiad~~vq~~Ll~aLe~G 832 (1093)
.+|+|||+.- ++.+....|.++.+.|
T Consensus 103 dvV~IDEaQF-f~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 103 DVIGIDEVQF-FDDEIVSIVEKLSADG 128 (219)
T ss_dssp SEEEECCGGG-SCTHHHHHHHHHHHTT
T ss_pred CEEEEechhc-CCHHHHHHHHHHHHCC
Confidence 6999999999 9988777777777644
No 309
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=81.89 E-value=7.1 Score=46.01 Aligned_cols=105 Identities=13% Similarity=0.156 Sum_probs=63.3
Q ss_pred CCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcE
Q 001355 231 KNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGV 307 (1093)
Q Consensus 231 ~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gv 307 (1093)
++.+|+|.+|.| .++.++... ++.|+.+. .+.|+ ..+-++-+.+++++...... +.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~-------------~~~f~~is--~~~~~--~~~~g~~~~~~r~lf~~A~~--~~p~ 110 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA-------------NVPFFHIS--GSDFV--ELFVGVGAARVRDLFAQAKA--HAPC 110 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH-------------TCCEEEEE--GGGTT--TCCTTHHHHHHHHHHHHHHH--TCSE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc-------------CCCeeeCC--HHHHH--HHHhcccHHHHHHHHHHHHh--cCCC
Confidence 568899999998 366666643 34577776 56663 23456667788887766653 5689
Q ss_pred EEEeCcchhhhcCCCc-----chHHHHHHHHHHhhhcCC-CCCcEEEEEecccH
Q 001355 308 VVNYGELKVLVSDSVS-----TEAARFVVSQLTSLLKSG-NGEKLWLIGAAMSY 355 (1093)
Q Consensus 308 il~igdl~~~v~~~~~-----~~~~~~~v~el~~Ll~~~-~~g~lwliG~a~T~ 355 (1093)
||||||+.-+...... .......++++-..+... ....+.+|++| ..
T Consensus 111 ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT-n~ 163 (476)
T 2ce7_A 111 IVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAAT-NR 163 (476)
T ss_dssp EEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE-SC
T ss_pred EEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEec-CC
Confidence 9999999998764321 111223333333333211 13468999984 44
No 310
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=81.88 E-value=0.51 Score=49.50 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=15.6
Q ss_pred eEEEeeCCCCChHHHHHHHHH-HHh
Q 001355 727 IWLAFLGPDKVGKKKIASALA-EIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA-~~l 750 (1093)
-.+.|.||+|+|||++++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 468999999999999999999 765
No 311
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=81.78 E-value=0.99 Score=47.54 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.6
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
...+.|.|++|+|||++++.|++.+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3478999999999999999999876
No 312
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=81.77 E-value=1.4 Score=52.77 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=33.4
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHH
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
.++|.++.+..|...+.... . ...++.++|+.|+|||.+|+.++.
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~-----~------~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLK-----G------EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTST-----T------SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred eecccHHHHHHHHHHHhccc-----C------CCceEEEEcCCCCCHHHHHHHHHh
Confidence 46888888887777664321 0 113689999999999999998863
No 313
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=81.46 E-value=0.95 Score=50.39 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.3
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
+..+.+.||+|+|||++++.|+..+-
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45789999999999999999998874
No 314
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=80.98 E-value=4.1 Score=43.56 Aligned_cols=94 Identities=14% Similarity=0.038 Sum_probs=44.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccccCCCccccccccccchhhhHHHHHHHhCCce
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIFDCQNIDFCDCKLRGKVLVDYIYQEFRSKPYS 806 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~~~~~l~G~~~g~~g~~~~~~l~eal~~~p~~ 806 (1093)
...+++|+-|.|||+.+-.++....+.....+.+...-.. .+. ..+.. . .|....-.+-.....+.+.+ .+..
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~-Ryg-~~i~s--r-~G~~~~a~~i~~~~di~~~~--~~~d 92 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT-RYS-SSFCT--H-DRNTMEALPACLLRDVAQEA--LGVA 92 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC-CC---------------CEEEEESSGGGGHHHH--TTCS
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCc-cch-HHHHh--h-cCCeeEEEecCCHHHHHHHh--ccCC
Confidence 4678899999999976654444444555554444422111 010 11110 0 01100000000012233333 4567
Q ss_pred EEEEcccccccCHHHHHHHhhhhc
Q 001355 807 VVFLEDLDKAADPIVQSSLTKAIS 830 (1093)
Q Consensus 807 VI~LDEVDkiad~~vq~~Ll~aLe 830 (1093)
+|+|||+.- +.. ...+.+.++
T Consensus 93 vViIDEaQF-~~~--v~el~~~l~ 113 (234)
T 2orv_A 93 VIGIDEGQF-FPD--IVEFCEAMA 113 (234)
T ss_dssp EEEESSGGG-CTT--HHHHHHHHH
T ss_pred EEEEEchhh-hhh--HHHHHHHHH
Confidence 999999999 764 445555554
No 315
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=80.89 E-value=0.86 Score=52.70 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=25.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
..++|+|++|+|||++|+.|++.+ .++.++..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D 290 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRD 290 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccc
Confidence 468999999999999999999866 34555543
No 316
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=80.79 E-value=0.98 Score=49.29 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
..+.|.|++|+|||++|+.|++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999995
No 317
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=80.79 E-value=1 Score=51.61 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.++|+||+|+|||++++.|+..+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999876
No 318
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=80.64 E-value=1.4 Score=59.42 Aligned_cols=90 Identities=12% Similarity=0.147 Sum_probs=49.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCccccCCCCccc-cCCCccccccccccchhhhHHHHHHHhCCc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSEQRVSQPNSIF-DCQNIDFCDCKLRGKVLVDYIYQEFRSKPY 805 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~~~~~~~~si~-~~~~l~G~~~g~~g~~~~~~l~eal~~~p~ 805 (1093)
-.++|+||+|+|||.+|..+|..+.....+++++++...........+. ....++-..+. ........+...+++...
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~-~leei~~~l~~lv~~~~~ 811 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPD-TGEQALEICDALARSGAV 811 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCS-SHHHHHHHHHHHHHHTCC
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCC-cHHHHHHHHHHHHHccCC
Confidence 4689999999999999999988776555566677655311000000000 00011000110 111222333333445666
Q ss_pred eEEEEcccccccC
Q 001355 806 SVVFLEDLDKAAD 818 (1093)
Q Consensus 806 ~VI~LDEVDkiad 818 (1093)
.+|+||.+.- +.
T Consensus 812 ~lVVIDsLq~-l~ 823 (1706)
T 3cmw_A 812 DVIVVDSVAA-LT 823 (1706)
T ss_dssp SEEEESCSTT-CC
T ss_pred CEEEEechhh-hc
Confidence 8999999998 54
No 319
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=80.53 E-value=0.92 Score=47.87 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=22.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+.|.|++|+|||++++.|++.+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999987
No 320
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=80.40 E-value=0.93 Score=48.21 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=19.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
..+.|.|++|+|||++++.|++.+-
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999873
No 321
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=80.24 E-value=1.3 Score=52.62 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=23.8
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
...+.|.|.+|+|||++|++||+.+.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHH
Confidence 36799999999999999999999984
No 322
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=80.23 E-value=1.4 Score=48.05 Aligned_cols=35 Identities=11% Similarity=-0.083 Sum_probs=26.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccC-CCceEEeec
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGN-KGKLIHVDV 762 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs-~~~fv~id~ 762 (1093)
.+++.||+|+|||++++.|+..+... ....+.++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 68999999999999999999877543 324444443
No 323
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=80.10 E-value=0.49 Score=50.77 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=22.8
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
...+.|.|++|+|||++++.|++.+
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999999887
No 324
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=79.75 E-value=1.6 Score=47.25 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-.++++||+|+|||++++.|+..+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3689999999999999999987554
No 325
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=79.53 E-value=1.4 Score=45.58 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=24.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceE
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLI 758 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv 758 (1093)
-+.|.|++|+|||+.++.|++.+-..+.+++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~ 32 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 3678999999999999999998855444443
No 326
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=79.47 E-value=1.4 Score=52.99 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=28.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
..++|+|++|+|||++|+.|++.+......+..+|.
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~ 408 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG 408 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc
Confidence 578999999999999999999987544445555664
No 327
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=79.33 E-value=2.4 Score=44.73 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=32.4
Q ss_pred CCCeEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 724 KRGIWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 724 k~~~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+....+++.|..|+|||+++..|+..+. .......+|+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 3447899999999999999999998887 666666677654
No 328
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=79.24 E-value=1.2 Score=49.91 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=27.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccC--CCceEEeecCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGN--KGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs--~~~fv~id~s~ 764 (1093)
.++++||+|+|||.++..++...... ....++||...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 48999999999999988666554322 45667787654
No 329
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=78.93 E-value=2.8 Score=42.98 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=22.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
.++|.|++|+|||+++..|+..++.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999987643
No 330
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=78.92 E-value=1.8 Score=43.88 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=25.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
.+.|.|++|+|||+++..|+..+-........+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 5899999999999999999987754333333333
No 331
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=78.75 E-value=10 Score=42.12 Aligned_cols=126 Identities=12% Similarity=0.080 Sum_probs=69.9
Q ss_pred CCchhhHHHHHHHhhcc-cccCCCCcEEeccchhh---HHHHHHHHHhcCC--CCCCCccccCcEEEEeechhhhhh---
Q 001355 209 DDVDENCRRIGEVLAGR-DEKKGKNPLLVGVCANS---ALKGFVESVNGGK--VGLFPRQIYGLDVVCVEYEINEFV--- 279 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~-~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~--~g~vp~~L~~~~v~~l~~e~~~~~--- 279 (1093)
.||++++.++.+.|.+- ..+..++.+|.|.+|+| .++.++..+.+.. ... +.+..++.++ ....-
T Consensus 23 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~----~~~~~~~~i~--~~~~~~~~ 96 (384)
T 2qby_B 23 PFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEE----YKDVKQAYVN--CREVGGTP 96 (384)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSS----STTCEEEEEE--HHHHCSCH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcC----CCCceEEEEE--CccCCCCH
Confidence 58999999998877631 11335688999999998 3777777664320 001 1156777776 33220
Q ss_pred -----------cCCc--cHH-HHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCc
Q 001355 280 -----------GGRV--NVE-MMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEK 345 (1093)
Q Consensus 280 -----------a~~~--~r~-e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~ 345 (1093)
.|.. ..+ .....+..+...++. . +.||+|||++++...... .. .+..|+. .. ..
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~--~-~~vlilDEi~~l~~~~~~-~~------~l~~l~~-~~-~~ 164 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN--I-RAIIYLDEVDTLVKRRGG-DI------VLYQLLR-SD-AN 164 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS--S-CEEEEEETTHHHHHSTTS-HH------HHHHHHT-SS-SC
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc--C-CCEEEEECHHHhccCCCC-ce------eHHHHhc-CC-cc
Confidence 0000 000 012223334444442 2 339999999999875321 11 1344444 22 67
Q ss_pred EEEEEec
Q 001355 346 LWLIGAA 352 (1093)
Q Consensus 346 lwliG~a 352 (1093)
+.+|+++
T Consensus 165 ~~iI~~t 171 (384)
T 2qby_B 165 ISVIMIS 171 (384)
T ss_dssp EEEEEEC
T ss_pred eEEEEEE
Confidence 9999984
No 332
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=78.62 E-value=1.5 Score=48.68 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=28.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccC------CCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGN------KGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs------~~~fv~id~s~ 764 (1093)
..++++||+|+|||.+|..++...... ....++++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 368999999999999999998765322 34566677654
No 333
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=78.60 E-value=1.3 Score=49.35 Aligned_cols=23 Identities=35% Similarity=0.720 Sum_probs=21.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+.|.||+|+|||++++.|+..+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 68999999999999999999987
No 334
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=78.58 E-value=1.6 Score=51.08 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=27.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEee
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVD 761 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id 761 (1093)
..++|.|.+|+|||++++.|++.++....+...++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 57999999999999999999998754333444444
No 335
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=78.43 E-value=2.2 Score=47.88 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=28.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhcc------CCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFG------NKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfg------s~~~fv~id~s~ 764 (1093)
..++++||+|+|||.+|..++....- .....++++...
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 46899999999999999999876321 244566777654
No 336
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=78.38 E-value=3.2 Score=45.68 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=30.2
Q ss_pred EEEeeCC-CCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 728 WLAFLGP-DKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~Gp-~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.++|+|+ .|+|||++|..||..+-......+.||+..
T Consensus 106 vI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 106 ILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 5777776 799999999999988876677778888764
No 337
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=78.03 E-value=2 Score=47.61 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=28.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
-.+++.|+||+|||.+|..+|..+.....+.+.+++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 3689999999999999999987654434555555543
No 338
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=77.89 E-value=3.5 Score=44.72 Aligned_cols=37 Identities=24% Similarity=0.137 Sum_probs=30.3
Q ss_pred EEEeeCC-CCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 728 WLAFLGP-DKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~Gp-~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.++|+|+ .|+|||++|..||..+-..+...+-||+..
T Consensus 84 vI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 84 SIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5777766 799999999999988876677788888874
No 339
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=77.85 E-value=1.4 Score=46.55 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=22.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+.|.|++|+|||++++.|++.+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999988
No 340
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=77.81 E-value=1.5 Score=46.43 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.3
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
+..+.|.|++|+|||++++.|++.+-
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35789999999999999999999874
No 341
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=77.78 E-value=1.6 Score=52.13 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=22.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..++|+|.+|+|||++|+.|++.+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999877
No 342
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=77.57 E-value=9.3 Score=38.58 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=32.6
Q ss_pred CCchhhHHHHHHHhhcccccCC-CCcEEeccchhh---HHHHHHHHHhc
Q 001355 209 DDVDENCRRIGEVLAGRDEKKG-KNPLLVGVCANS---ALKGFVESVNG 253 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~~~~~k-~NpvlVGe~~~~---a~~~~~~~i~~ 253 (1093)
.||++.++++.+.+.. .+. ++.+|.|++|+| .++.++..+..
T Consensus 26 ~g~~~~~~~l~~~l~~---~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 26 VGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSCHHHHHHHHHHHHH---TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred hCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5799999999998887 443 356889999998 47788777654
No 343
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=77.24 E-value=1.8 Score=45.17 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=25.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH-hccCCCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI-VFGNKGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~-lfgs~~~fv~id~ 762 (1093)
..+++.|++|+|||.+|..++.. ......+.+.+++
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 46899999999999999877643 2233444444444
No 344
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=77.22 E-value=1.6 Score=45.20 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=22.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+.+.|+.|+|||++|+.||+.+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999988
No 345
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=76.84 E-value=1.4 Score=47.02 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=23.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
..+.|.|++|+|||++++.|++.+-.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998743
No 346
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=76.76 E-value=1.6 Score=52.47 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
..+.|.|++|+|||+++++|+..+..
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcc
Confidence 47899999999999999999998853
No 347
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=76.51 E-value=1.8 Score=42.52 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=23.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGN 753 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs 753 (1093)
...+++||+|+|||.+..+|.-.++|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l~g~ 50 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGLYWP 50 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHCS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 367899999999999999999888764
No 348
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=75.93 E-value=1.6 Score=45.79 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=23.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
..+.|.|++|+|||+.++.|++.+-.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999998843
No 349
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=75.33 E-value=4.3 Score=51.67 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-.+.++||.|+|||++.|.|+...
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHHH
Confidence 468999999999999999887543
No 350
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=75.31 E-value=1.6 Score=45.39 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=21.7
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-+.|-|++|+|||+.++.|++.+-
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999999883
No 351
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=75.20 E-value=11 Score=41.02 Aligned_cols=111 Identities=14% Similarity=0.070 Sum_probs=66.3
Q ss_pred CCchhhHHHHHHHhhcccccCCCCcEEecc-chhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCcc
Q 001355 209 DDVDENCRRIGEVLAGRDEKKGKNPLLVGV-CANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVN 284 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~~~~~k~NpvlVGe-~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~ 284 (1093)
.|.++.++.+.+.+.+ ++..|++|+|- +|+| .++.++..+ +..++.+. .+. ..
T Consensus 29 vg~~~~~~~l~~~l~~---~~~~~~~L~~G~~G~GKT~la~~la~~l-------------~~~~~~i~--~~~-----~~ 85 (324)
T 3u61_B 29 ILPAFDKETFKSITSK---GKIPHIILHSPSPGTGKTTVAKALCHDV-------------NADMMFVN--GSD-----CK 85 (324)
T ss_dssp CCCHHHHHHHHHHHHT---TCCCSEEEECSSTTSSHHHHHHHHHHHT-------------TEEEEEEE--TTT-----CC
T ss_pred hCcHHHHHHHHHHHHc---CCCCeEEEeeCcCCCCHHHHHHHHHHHh-------------CCCEEEEc--ccc-----cC
Confidence 4677778888888877 66678877764 9998 366666653 35677666 222 12
Q ss_pred HHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEEEec
Q 001355 285 VEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLIGAA 352 (1093)
Q Consensus 285 r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwliG~a 352 (1093)
..++...+++....... .+.+-||+|||++.+-+ ..+...+-+++. ...+.+.+|+++
T Consensus 86 ~~~i~~~~~~~~~~~~~-~~~~~vliiDEi~~l~~--------~~~~~~L~~~le-~~~~~~~iI~~~ 143 (324)
T 3u61_B 86 IDFVRGPLTNFASAASF-DGRQKVIVIDEFDRSGL--------AESQRHLRSFME-AYSSNCSIIITA 143 (324)
T ss_dssp HHHHHTHHHHHHHBCCC-SSCEEEEEEESCCCGGG--------HHHHHHHHHHHH-HHGGGCEEEEEE
T ss_pred HHHHHHHHHHHHhhccc-CCCCeEEEEECCcccCc--------HHHHHHHHHHHH-hCCCCcEEEEEe
Confidence 34444444443332111 25789999999998852 112223445554 112467788874
No 352
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=75.11 E-value=1.7 Score=46.42 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=26.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
.-+-|.|++|+||+++|+.|++.+ .+.+++++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~-----g~~~is~g 40 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF-----GIPQISTG 40 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-----TCCEECHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh-----CCCeeech
Confidence 468899999999999999999987 24556554
No 353
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=74.74 E-value=13 Score=40.77 Aligned_cols=83 Identities=7% Similarity=0.013 Sum_probs=50.0
Q ss_pred CCchhhHHHHHHHhhcc--cccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCc
Q 001355 209 DDVDENCRRIGEVLAGR--DEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRV 283 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~--~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~ 283 (1093)
+|+++.++.+.+.+.+- ..+.-++.+|.|++|+| .++.++... +..++.+. ...+ .
T Consensus 32 iG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~-------------~~~~~~~~--~~~~----~ 92 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM-------------SANIKTTA--APMI----E 92 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT-------------TCCEEEEE--GGGC----C
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh-------------CCCeEEec--chhc----c
Confidence 47888777777777641 11233688899999998 366665552 22355555 2221 1
Q ss_pred cHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhh
Q 001355 284 NVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLV 318 (1093)
Q Consensus 284 ~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v 318 (1093)
..+++.. .+... ..+.||||||++.+-
T Consensus 93 ~~~~~~~-------~~~~~-~~~~vl~lDEi~~l~ 119 (338)
T 3pfi_A 93 KSGDLAA-------ILTNL-SEGDILFIDEIHRLS 119 (338)
T ss_dssp SHHHHHH-------HHHTC-CTTCEEEEETGGGCC
T ss_pred chhHHHH-------HHHhc-cCCCEEEEechhhcC
Confidence 2333332 23332 567899999999874
No 354
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=74.55 E-value=6.5 Score=44.20 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=23.2
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
...+.|.|++|+|||++..+|...+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 357999999999999999999986643
No 355
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=74.29 E-value=2.3 Score=48.28 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=30.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
.+++.|++|+|||.+++.|...+......++.+|..
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 589999999999999999988776666777778864
No 356
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=74.23 E-value=1.6 Score=46.45 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=21.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-++.+.||+|+|||++.+.|+..+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 478999999999999999998765
No 357
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=74.20 E-value=3 Score=46.90 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=32.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.++++.|..|+|||++|-.||..+-..+...+.+|+.-
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 57899999999999999999988776677777788764
No 358
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=73.67 E-value=1.2 Score=46.78 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=22.2
Q ss_pred CCeEEEeeCCCCChHHHHHHHHHHH
Q 001355 725 RGIWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 725 ~~~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.+..+.|.|++|+|||++++.|+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4468999999999999999999876
No 359
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=73.67 E-value=5.8 Score=44.88 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=29.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+..+..|.-|+|||++|-.||..+-..+.+.+.+|+..
T Consensus 145 vIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~ 182 (373)
T 3fkq_A 145 VVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQ 182 (373)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCT
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 34444568999999999999988766666788899873
No 360
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=72.86 E-value=1.4 Score=44.69 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
.+.+.|++|+|||++++.|+..+-.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4889999999999999999988743
No 361
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=72.81 E-value=1.8 Score=46.83 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=21.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-++.+.||+|+|||++.+.|+..+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999765
No 362
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=72.66 E-value=1.8 Score=46.04 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=26.8
Q ss_pred HHHHHHhCCceEEEEcccccccCHHHHHHHhhhhc
Q 001355 796 IYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAIS 830 (1093)
Q Consensus 796 l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe 830 (1093)
+..++-.+| .|++|||--.-+|+..+..+++.|.
T Consensus 138 lAraL~~~p-~lllLDEPts~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 138 LARAVYSNA-DIYLFDDPLSAVDAHVGKHIFENVI 171 (237)
T ss_dssp HHHHHHHCC-SEEEEESTTTTSCHHHHHHHHHHTT
T ss_pred HHHHHhcCC-CEEEEeCcccccCHHHHHHHHHHHH
Confidence 455555555 5999999987589999999998884
No 363
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=72.61 E-value=3.2 Score=42.11 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
.+.|.|++|+|||++.+.|...+.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcc
Confidence 589999999999999999988764
No 364
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=72.36 E-value=2 Score=44.10 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=25.3
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
++++|++|+|||.+|..|+.. + .+.++++-+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~--~--~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD--A--PQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS--C--SSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc--C--CCeEEEecCC
Confidence 689999999999999999865 2 3566776543
No 365
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=72.21 E-value=2 Score=45.88 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
.+.+.||+|+|||++.+.|+..+.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 688999999999999999997663
No 366
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.15 E-value=2.9 Score=47.10 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=27.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccC------CCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGN------KGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs------~~~fv~id~s 763 (1093)
-.+.++||+|+|||.+++.|+..+... ....+++|..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 578999999999999999999876211 1344667654
No 367
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=71.83 E-value=1.6 Score=45.96 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=21.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-.+.+.||+|+|||++.+.|+..+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999998665
No 368
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=71.82 E-value=17 Score=43.00 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=69.4
Q ss_pred CCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHHHHHHHHHHHhhccCCCcE
Q 001355 231 KNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMMLKFKEVESAVGRCSGPGV 307 (1093)
Q Consensus 231 ~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e~rlkel~~~v~~~~~~gv 307 (1093)
++.+|+|.+|.| .++.++..+. ..++.++ -..|+ ..+.++.+.++..+-..... ..+-
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~-------------~~~i~i~--g~~~~--~~~~g~~~~~v~~lfq~a~~--~~p~ 125 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEAR-------------VPFITAS--GSDFV--EMFVGVGAARVRDLFETAKR--HAPC 125 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT-------------CCEEEEE--GGGGT--SSCTTHHHHHHHHHTTTSSS--SSSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-------------CCEEEEe--hhHHH--HhhhhhHHHHHHHHHHHHHh--cCCC
Confidence 457999999998 3666665431 3467776 44553 23455666666555443321 3457
Q ss_pred EEEeCcchhhhcCCC-----cchHHHHHHHHHHhhhcCCCC-CcEEEEEecccHHHHHhhhhcCCCCCC--CCcce-eee
Q 001355 308 VVNYGELKVLVSDSV-----STEAARFVVSQLTSLLKSGNG-EKLWLIGAAMSYETYLKMLAKFPGLDN--DWDLQ-LLP 378 (1093)
Q Consensus 308 il~igdl~~~v~~~~-----~~~~~~~~v~el~~Ll~~~~~-g~lwliG~a~T~~tY~k~~~~~PslE~--~w~Lq-~v~ 378 (1093)
|+||||+..+..... .....+..++.+-..|..... ..+.+|++ |.... .-+|+|-+ +|+.+ .|+
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAa-tn~p~-----~LD~aLlr~gRfdr~i~i~ 199 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAA-TNRPD-----ILDPALLRPGRFDRQIAID 199 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEEC-CSCGG-----GSCTTTSSTTSSCCEEECC
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEe-cCChh-----hcCcccccccccceEEecC
Confidence 899999988765321 112233444443333331111 23566665 34332 26788877 78875 444
Q ss_pred cc
Q 001355 379 IH 380 (1093)
Q Consensus 379 i~ 380 (1093)
.|
T Consensus 200 ~P 201 (499)
T 2dhr_A 200 AP 201 (499)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 369
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=71.71 E-value=1.9 Score=45.06 Aligned_cols=22 Identities=36% Similarity=0.286 Sum_probs=20.4
Q ss_pred EEEeeCCCCChHHHHHHHHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.+.+.||+|+|||++.+.|+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999976
No 370
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=71.64 E-value=2.1 Score=45.71 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-++.+.||+|+|||++.+.|+..+-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999997653
No 371
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=71.52 E-value=3.7 Score=40.79 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+++.|++|+|||.+...|...-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999887643
No 372
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=71.44 E-value=2.1 Score=48.30 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-.+.+.||+|+|||++++.|+..+
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999876
No 373
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=71.40 E-value=2.3 Score=46.05 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-.+.+.||+|+|||++.+.|+..+
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999763
No 374
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=71.35 E-value=7 Score=43.67 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=24.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGK 756 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~ 756 (1093)
..+.|.|++|+|||+++..|+..+......
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~ 86 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLK 86 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence 468899999999999999999877533333
No 375
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=71.06 E-value=2.1 Score=46.47 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-++.+.||+|+|||++.+.|+..+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 368999999999999999999765
No 376
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=70.98 E-value=1.8 Score=47.22 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-++.+.||+|+|||++.+.|+..+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999999765
No 377
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=70.89 E-value=8.1 Score=42.21 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=29.4
Q ss_pred EEEee-CCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 728 WLAFL-GPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~-Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.|+|+ +-.|+|||++|-.||..+-......+-||+..
T Consensus 94 vI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 131 (286)
T 3la6_A 94 VLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDM 131 (286)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccC
Confidence 35555 45799999999999998877777888888875
No 378
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=70.53 E-value=2.2 Score=45.66 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
-.+.+.||+|+|||++.+.|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999975
No 379
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=70.41 E-value=2.5 Score=43.39 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-++|.|++|+|||++|.+|.+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46999999999999999998873
No 380
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=70.33 E-value=7.4 Score=39.85 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGN 753 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs 753 (1093)
..++|.|.+|+|||.++..++...+..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 358899999999999999999887654
No 381
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=70.29 E-value=2.9 Score=43.19 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=23.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
...+|+||+|+|||.+..+|.-.++|
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 46899999999999999999988876
No 382
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=70.27 E-value=2 Score=45.80 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-.+.+.||+|+|||++.+.|+..+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999765
No 383
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=70.16 E-value=2 Score=46.28 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=21.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-.+.+.||+|+|||++.+.|+..+-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999997653
No 384
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=70.04 E-value=2.2 Score=43.05 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
..+.|.|++|+|||++.+.|+...+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 5789999999999999999987654
No 385
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.99 E-value=15 Score=39.57 Aligned_cols=117 Identities=11% Similarity=0.128 Sum_probs=67.9
Q ss_pred CCchhhHHHHHHHhhcccccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccH
Q 001355 209 DDVDENCRRIGEVLAGRDEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNV 285 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r 285 (1093)
.|+++.++.+.+.+.. ++..+.+|.|++|+| .++.++..+.... .+..++.++ -+. ....
T Consensus 24 ~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~--------~~~~~~~~~--~~~----~~~~ 86 (323)
T 1sxj_B 24 VGNKETIDRLQQIAKD---GNMPHMIISGMPGIGKTTSVHCLAHELLGRS--------YADGVLELN--ASD----DRGI 86 (323)
T ss_dssp CSCTHHHHHHHHHHHS---CCCCCEEEECSTTSSHHHHHHHHHHHHHGGG--------HHHHEEEEC--TTS----CCSH
T ss_pred HCCHHHHHHHHHHHHc---CCCCeEEEECcCCCCHHHHHHHHHHHhcCCc--------ccCCEEEec--Ccc----ccCh
Confidence 4789999999888887 665678999999998 4777777764320 123455554 221 1123
Q ss_pred HHHHHHHHHHHHHhhcc-CCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEEEec
Q 001355 286 EMMMLKFKEVESAVGRC-SGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLIGAA 352 (1093)
Q Consensus 286 ~e~e~rlkel~~~v~~~-~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwliG~a 352 (1093)
+++...++++....... .+...||+|+|++.+-.. + ...+-+++. ...+...+|.++
T Consensus 87 ~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----~----~~~L~~~le-~~~~~~~~il~~ 144 (323)
T 1sxj_B 87 DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-----A----QQALRRTME-LYSNSTRFAFAC 144 (323)
T ss_dssp HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-----H----HHTTHHHHH-HTTTTEEEEEEE
T ss_pred HHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-----H----HHHHHHHHh-ccCCCceEEEEe
Confidence 33433333332111111 244799999999988541 1 223455554 123467777763
No 386
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=69.79 E-value=2.3 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-.+.+.||+|+|||++.+.|+..+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 368999999999999999999765
No 387
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=69.64 E-value=7.7 Score=45.27 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=22.3
Q ss_pred ceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 805 YSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 805 ~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
..+|+|||+-. ++......|+.++..
T Consensus 235 ~d~liiDE~sm-~~~~~l~~l~~~~~~ 260 (446)
T 3vkw_A 235 FKRLFIDEGLM-LHTGCVNFLVEMSLC 260 (446)
T ss_dssp CSEEEEETGGG-SCHHHHHHHHHHTTC
T ss_pred CCEEEEeCccc-CCHHHHHHHHHhCCC
Confidence 67999999999 999998888877753
No 388
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=69.62 E-value=2.8 Score=42.36 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
..+.|.|++|+|||.+.+.|....|
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4689999999999999999987543
No 389
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=69.50 E-value=3 Score=42.59 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
..++|.|++|+|||.+..+|....+
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999987654
No 390
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=69.38 E-value=2.3 Score=46.19 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-.+.+.||+|+|||++.+.|+..+-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999997653
No 391
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=69.36 E-value=2.4 Score=45.77 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=21.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-.+.+.||+|+|||++.+.|+..+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999765
No 392
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=69.32 E-value=3 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.094 Sum_probs=20.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
..++++|++|+|||.+|..++..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998875
No 393
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=69.30 E-value=2.1 Score=46.41 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-.+.+.||+|+|||++.+.|+..+-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3689999999999999999997653
No 394
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=69.03 E-value=2.2 Score=45.75 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=21.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-.+.+.||+|+|||++.+.|+..+.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999997653
No 395
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=69.03 E-value=2.4 Score=45.90 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-.+.+.||+|+|||++.+.|+..+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999765
No 396
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=69.02 E-value=2 Score=45.09 Aligned_cols=23 Identities=22% Similarity=0.575 Sum_probs=20.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+.+.||+|+|||++.+.|+..+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998765
No 397
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=68.96 E-value=2.8 Score=40.09 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
-+++.|++|+|||.+...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999988753
No 398
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=68.94 E-value=3.4 Score=43.70 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=22.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..+.+.|+.|+|||++|+.||+.+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHc
Confidence 578999999999999999999988
No 399
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=68.75 E-value=2.5 Score=47.99 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=22.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-.+.|.||+|+|||++.+.|+-.+-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3689999999999999999997663
No 400
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=68.46 E-value=3.5 Score=46.75 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=24.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNK 754 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~ 754 (1093)
.++++||+|+|||++-.+|+-.+||..
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al~g~~ 51 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFALFGNG 51 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHSCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCc
Confidence 577999999999999999999998853
No 401
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=68.43 E-value=4.1 Score=47.44 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=27.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhcc-CCCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFG-NKGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfg-s~~~fv~id~ 762 (1093)
-.+++.|++|+|||.++..|+..+.. ...+.+.+++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 36899999999999999999887653 2335555554
No 402
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=68.36 E-value=2.3 Score=45.68 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=21.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-.+.+.||+|+|||++.+.|+..+-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3689999999999999999987653
No 403
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=68.34 E-value=4 Score=46.01 Aligned_cols=35 Identities=6% Similarity=0.104 Sum_probs=26.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
.+++.|+||+|||.+|..+|..+.....+.+.+.+
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 68999999999999999998876544455444444
No 404
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=68.15 E-value=2.4 Score=44.83 Aligned_cols=33 Identities=6% Similarity=0.102 Sum_probs=25.3
Q ss_pred HHHHHHhCCceEEEEcccccccCHHHHHHHhhhh
Q 001355 796 IYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAI 829 (1093)
Q Consensus 796 l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aL 829 (1093)
+..++-.+| .+++|||--.-+|+..+..+.+.+
T Consensus 141 lAral~~~p-~lllLDEPts~LD~~~~~~i~~~l 173 (229)
T 2pze_A 141 LARAVYKDA-DLYLLDSPFGYLDVLTEKEIFESC 173 (229)
T ss_dssp HHHHHHSCC-SEEEEESTTTTSCHHHHHHHHHHC
T ss_pred HHHHHhcCC-CEEEEECcccCCCHHHHHHHHHHH
Confidence 455555555 599999998758999999998863
No 405
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=68.09 E-value=2.7 Score=45.61 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=22.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
..+.+.||+|+|||++.+.|+....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4589999999999999999998764
No 406
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=68.02 E-value=8.3 Score=41.98 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=30.2
Q ss_pred CCchhhHHHHHHHhhcccccCCCCcEEeccchhhH---HHHHHHH
Q 001355 209 DDVDENCRRIGEVLAGRDEKKGKNPLLVGVCANSA---LKGFVES 250 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~a---~~~~~~~ 250 (1093)
.||++++.++.+.+.. +++.+|.|.+|+|- ++.++..
T Consensus 15 ~gR~~el~~L~~~l~~-----~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 15 FDREEESRKLEESLEN-----YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSCHHHHHHHHHHHHH-----CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhc-----CCeEEEECCCcCCHHHHHHHHHHH
Confidence 5899999999998877 37899999999983 5555554
No 407
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=67.84 E-value=4.3 Score=48.23 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=27.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeec
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDV 762 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~ 762 (1093)
-.+++.||+|+|||++++.|+..........+++..
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 478999999999999999999876544444455554
No 408
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=67.79 E-value=3 Score=47.44 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-.+.+.||+|+|||++.+.|+-.+-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 3689999999999999999997653
No 409
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=67.78 E-value=2.4 Score=46.36 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=21.1
Q ss_pred EEEeeCCCCChHHHHHHHHHHHh
Q 001355 728 WLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.+.+.||+|+|||++.+.|+..+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999765
No 410
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=67.58 E-value=2.4 Score=45.59 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=21.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-++.+.||+|+|||++.+.|+..+-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999999999999999997653
No 411
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=67.35 E-value=3 Score=47.32 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=22.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-.+.+.||+|+|||++.+.|+-.+-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 3688999999999999999997653
No 412
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=67.33 E-value=4.2 Score=47.18 Aligned_cols=37 Identities=11% Similarity=-0.048 Sum_probs=27.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhcc-CCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFG-NKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfg-s~~~fv~id~s 763 (1093)
-.+++.|++|+|||.+|..+|..+.. ...+.+.+++.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 36899999999999999999886643 34455556553
No 413
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=67.29 E-value=4.4 Score=49.28 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=20.6
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
..++.||+|||||+++..+...+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999988877766654
No 414
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=67.27 E-value=4.2 Score=42.24 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=31.0
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
+.|.|..|+|||++|-.||..+-..+.+.+.||+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 455899999999999999999877777888888875
No 415
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=67.12 E-value=3.1 Score=47.62 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-.+.|.||+|+|||++.+.|+-.+-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3689999999999999999997663
No 416
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=67.10 E-value=4.1 Score=46.96 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=26.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhcc------CCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFG------NKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfg------s~~~fv~id~s 763 (1093)
-.+.|+||+|+|||.+++.|+-...- .....++++..
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 46899999999999999977643321 23446677654
No 417
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=66.93 E-value=3.2 Score=39.91 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.-+++.|++|+|||.+...|....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 568999999999999999987643
No 418
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=66.83 E-value=3.2 Score=47.38 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-.+.+.||+|+|||++.+.|+-.+-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 3689999999999999999997653
No 419
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=66.73 E-value=5.9 Score=45.82 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHhcccCcc-HHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 678 FDPRDYKTLRIALAEKVGWQ-DEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 678 ~d~e~lk~L~~~L~e~ViGQ-deai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+..+-++.+.-.+.+ |. .++...|.+++..... ....+.|.||+|+|||++.++|+...
T Consensus 34 ~~~~~l~~is~~i~~---Ge~~~~~~~i~~~L~~~~~-----------~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 34 ISQEILNLIELRMRA---GNIQLTNSAISDALKEIDS-----------SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp SCHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHH-----------CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCHHHhhhccceecC---CCCcccchhhhhhhhhccc-----------CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 344455566555542 33 4555667777766543 11478999999999999999998643
No 420
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=66.70 E-value=2.8 Score=47.43 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-.+.+.||+|+|||++.+.|+-..-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 3689999999999999999997653
No 421
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=66.54 E-value=8.2 Score=49.24 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
-.++++||.|+|||++.|.|+-.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988643
No 422
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=66.45 E-value=3.5 Score=47.40 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=30.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
..+++.|++|+|||.+.+.|...+......++.+|...
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkg 91 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG 91 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 46999999999999998877776666667788888754
No 423
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=66.39 E-value=3 Score=39.69 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=20.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.-+++.|++|+|||.+...+...-
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999987643
No 424
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=66.34 E-value=4.3 Score=47.34 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=28.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
-.+++.|+||+|||.+|..+|..+...+.+.+.+.+.
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3689999999999999999888765445555555544
No 425
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=66.33 E-value=3 Score=47.36 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-.+.+.||+|+|||++.+.|+-.+.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3688999999999999999997653
No 426
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=66.31 E-value=2.3 Score=47.82 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=22.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
.-|.|-|+.|+|||++++.|++.+-
T Consensus 8 ~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 8 VRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999874
No 427
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=66.30 E-value=10 Score=42.46 Aligned_cols=113 Identities=10% Similarity=0.073 Sum_probs=64.3
Q ss_pred CCchhhHHHHHHHhh------------cccccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeec
Q 001355 209 DDVDENCRRIGEVLA------------GRDEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEY 273 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~------------R~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~ 273 (1093)
.|.++-++.+.+.+. .+.....++.+|+|.+|+| .++.++... +..++.++
T Consensus 18 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~-------------~~~~~~~~- 83 (363)
T 3hws_A 18 IGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL-------------DVPFTMAD- 83 (363)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT-------------TCCEEEEE-
T ss_pred cCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc-------------CCCEEEec-
Confidence 456676777776663 1011145789999999998 366666553 45688887
Q ss_pred hhhhhhcCCccHHH-HHHHHHHHHHHh----hccCCCcEEEEeCcchhhhcCCCc-----chHHHHHHHHHHhhhc
Q 001355 274 EINEFVGGRVNVEM-MMLKFKEVESAV----GRCSGPGVVVNYGELKVLVSDSVS-----TEAARFVVSQLTSLLK 339 (1093)
Q Consensus 274 e~~~~~a~~~~r~e-~e~rlkel~~~v----~~~~~~gvil~igdl~~~v~~~~~-----~~~~~~~v~el~~Ll~ 339 (1093)
.+.+.. ..+-|+ .+..+.++.... +. ..+-||||||+.-+...... ....+.+...|-++|.
T Consensus 84 -~~~l~~-~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le 155 (363)
T 3hws_A 84 -ATTLTE-AGYVGEDVENIIQKLLQKCDYDVQK--AQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE 155 (363)
T ss_dssp -HHHHTT-CHHHHHHHTHHHHHHHHHTTTCHHH--HHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH
T ss_pred -hHHhcc-cccccccHHHHHHHHHHHhhhhHHh--cCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhc
Confidence 665532 112232 344455544332 21 23568999999988765321 1122335555555554
No 428
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=66.25 E-value=14 Score=40.17 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=28.8
Q ss_pred CCchhhHHHHHHHhhcccccCCCCcEEeccchhh---HHHHHHHHH
Q 001355 209 DDVDENCRRIGEVLAGRDEKKGKNPLLVGVCANS---ALKGFVESV 251 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~---a~~~~~~~i 251 (1093)
.||++++.++.+ |.+ ++.+|.|.+|+| .++.++..+
T Consensus 16 ~gR~~el~~L~~-l~~------~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 16 FDREKEIEKLKG-LRA------PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp CCCHHHHHHHHH-TCS------SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cChHHHHHHHHH-hcC------CcEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999 543 588999999998 366776664
No 429
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=66.16 E-value=7.2 Score=50.26 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
-.++++||.|+|||++.|.|+-
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 4789999999999999998853
No 430
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=66.14 E-value=3.5 Score=40.24 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
..+.|.|++|+|||.+.+.|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998753
No 431
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=66.08 E-value=2.7 Score=41.87 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=18.9
Q ss_pred EEEeeCCCCChHHHHHHHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
-+++.|++|+|||.|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998864
No 432
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=65.93 E-value=3.3 Score=40.90 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
..+.|.|++|+|||.|.++|..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5699999999999999999874
No 433
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=65.82 E-value=3.5 Score=39.37 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-++|.|++|+|||.+..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999888753
No 434
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=65.77 E-value=5.4 Score=44.64 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
..+.|.|++|+|||++.+.|+..+..
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 57999999999999999999987754
No 435
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=65.71 E-value=3.3 Score=40.16 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=19.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
.-+++.|++|+|||.+..+|..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4699999999999999988763
No 436
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=65.67 E-value=4.8 Score=44.65 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=32.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.++++.|..|+|||++|-.||..+-..+...+.+|+.-
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 58899999999999999999988776677777788764
No 437
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=65.42 E-value=3.5 Score=39.38 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-+++.|++|+|||.+...|...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999988754
No 438
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=65.20 E-value=4.7 Score=47.53 Aligned_cols=36 Identities=6% Similarity=-0.212 Sum_probs=28.3
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccC-CCceEEeecC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGN-KGKLIHVDVS 763 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs-~~~fv~id~s 763 (1093)
.+++.|++|+|||.+|..+|..+... ..+.+.+++.
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 58999999999999999999877543 4556666554
No 439
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=65.03 E-value=3.4 Score=40.87 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
.-++|.|++|+|||.+.+.|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999874
No 440
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=64.81 E-value=3.8 Score=40.27 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.-++|.|++|+|||.+..+|...-
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 569999999999999999987543
No 441
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=64.74 E-value=3.7 Score=39.41 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=20.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.-+++.|++|+|||.+..++...-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999887543
No 442
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=64.71 E-value=6.7 Score=43.96 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=32.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.++++.|..|+|||++|-.||..+-..+...+-+|+..
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 47899999999999999999998877777888888764
No 443
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=64.70 E-value=5.2 Score=43.59 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=30.9
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.+.|+|.-|+|||++|-.||..+-..+...+.||+..
T Consensus 43 vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4666699999999999999988876677888888875
No 444
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=64.58 E-value=2.2 Score=47.34 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-.+.+.||+|+|||++.+.|+..+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 368999999999999999999765
No 445
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=64.41 E-value=3.8 Score=39.38 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.-+++.|++|+|||.+.+.|...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 569999999999999999987644
No 446
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=64.28 E-value=3.4 Score=47.13 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-.+.+.||+|+|||++.+.|+-.+-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 3689999999999999999997653
No 447
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=63.95 E-value=3.4 Score=44.75 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=26.6
Q ss_pred HHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 796 IYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 796 l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
+..++-.+| .+++|||--.-+|+..+..+.+.|.+
T Consensus 139 lAraL~~~p-~lllLDEPts~LD~~~~~~l~~~L~~ 173 (263)
T 2pjz_A 139 TSLALASQP-EIVGLDEPFENVDAARRHVISRYIKE 173 (263)
T ss_dssp HHHHHHTCC-SEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CEEEEECCccccCHHHHHHHHHHHHH
Confidence 344444444 59999998765899999999999874
No 448
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=63.95 E-value=4.9 Score=38.74 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-+++.|++|+|||.+..++...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999988653
No 449
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=63.74 E-value=2.9 Score=49.12 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=21.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
.+.+.||+|+|||+++|.|+....
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTH
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 589999999999999999998653
No 450
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=63.54 E-value=3.8 Score=39.55 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=18.3
Q ss_pred EEEeeCCCCChHHHHHHHHH
Q 001355 728 WLAFLGPDKVGKKKIASALA 747 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA 747 (1093)
-+++.|++|+|||.+...+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999885
No 451
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=63.52 E-value=6.9 Score=43.55 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=31.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~ 764 (1093)
.++++.|..|+|||++|-.||..+-..+.....+|+.-
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~ 57 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP 57 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 47889999999999999999988876667777777764
No 452
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=63.52 E-value=4.4 Score=39.43 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-+++.|++|+|||.+...+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999888754
No 453
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=63.50 E-value=4.1 Score=39.29 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-+++.|++|+|||.+...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56999999999999999988754
No 454
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=63.41 E-value=3.9 Score=39.34 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
.-+++.|++|+|||.+..+|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999998874
No 455
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=63.37 E-value=17 Score=37.04 Aligned_cols=79 Identities=6% Similarity=0.006 Sum_probs=46.6
Q ss_pred hhHHHHHHHhhcccccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccHHHHH
Q 001355 213 ENCRRIGEVLAGRDEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNVEMMM 289 (1093)
Q Consensus 213 eeirrv~~vL~R~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r~e~e 289 (1093)
+-++.+...+.. .+.++.+|+|.+|+| .++.++..+... +..++.++ ...+....
T Consensus 38 ~~~~~l~~~~~~---~~~~~~ll~G~~G~GKT~la~~l~~~~~~~----------~~~~~~~~--~~~~~~~~------- 95 (242)
T 3bos_A 38 ELIGALKSAASG---DGVQAIYLWGPVKSGRTHLIHAACARANEL----------ERRSFYIP--LGIHASIS------- 95 (242)
T ss_dssp HHHHHHHHHHHT---CSCSEEEEECSTTSSHHHHHHHHHHHHHHT----------TCCEEEEE--GGGGGGSC-------
T ss_pred HHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHHHc----------CCeEEEEE--HHHHHHHH-------
Confidence 444444444444 467899999999998 377777766542 34455555 44432110
Q ss_pred HHHHHHHHHhhccCCCcEEEEeCcchhhhcC
Q 001355 290 LKFKEVESAVGRCSGPGVVVNYGELKVLVSD 320 (1093)
Q Consensus 290 ~rlkel~~~v~~~~~~gvil~igdl~~~v~~ 320 (1093)
...++.. ..+.||+|||++++-..
T Consensus 96 ------~~~~~~~-~~~~vliiDe~~~~~~~ 119 (242)
T 3bos_A 96 ------TALLEGL-EQFDLICIDDVDAVAGH 119 (242)
T ss_dssp ------GGGGTTG-GGSSEEEEETGGGGTTC
T ss_pred ------HHHHHhc-cCCCEEEEeccccccCC
Confidence 1111221 44678999999998653
No 456
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=63.02 E-value=4.9 Score=39.13 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=19.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
..+++.|++|+|||.+..+|..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999998864
No 457
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=63.02 E-value=2.9 Score=47.34 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
-.+.+.||+|+|||++.+.|+-.+
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 368899999999999999999765
No 458
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=62.93 E-value=4.2 Score=39.55 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-+++.|++|+|||.+...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999988754
No 459
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=62.86 E-value=3.4 Score=45.44 Aligned_cols=33 Identities=6% Similarity=0.102 Sum_probs=25.0
Q ss_pred HHHHHHhCCceEEEEcccccccCHHHHHHHhhhh
Q 001355 796 IYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAI 829 (1093)
Q Consensus 796 l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aL 829 (1093)
+..++-.+| .+++|||--.-+|+..+..+++.+
T Consensus 170 lAraL~~~p-~lllLDEPts~LD~~~~~~i~~~l 202 (290)
T 2bbs_A 170 LARAVYKDA-DLYLLDSPFGYLDVLTEKEIFESC 202 (290)
T ss_dssp HHHHHHSCC-SEEEEESTTTTCCHHHHHHHHHHC
T ss_pred HHHHHHCCC-CEEEEECCcccCCHHHHHHHHHHH
Confidence 445555555 599999998658999999998864
No 460
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=62.86 E-value=4.2 Score=39.01 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-+++.|++|+|||.+..+|...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999988753
No 461
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=62.82 E-value=3.4 Score=39.72 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.4
Q ss_pred eEEEeeCCCCChHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALA 747 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA 747 (1093)
.-++|.|++|+|||.+.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 358999999999999998874
No 462
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=62.77 E-value=5.2 Score=38.36 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-+++.|++|+|||.+...+...-|
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~ 25 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEI 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCc
Confidence 389999999999999999876544
No 463
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=62.70 E-value=4.3 Score=38.93 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-+++.|++|+|||.+..++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999988764
No 464
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=62.61 E-value=4.9 Score=51.92 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=34.1
Q ss_pred ccCccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHH
Q 001355 693 KVGWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 693 ~ViGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.++|.++.+..|...+..... ....+.++|+.|+|||.||+.++..
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~~-----------~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLNG-----------EPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTTT-----------SCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eeccHHHHHHHHHHHHhhccC-----------CCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 478888888888777653211 1136899999999999999887754
No 465
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=62.61 E-value=4.6 Score=45.64 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=24.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGN 753 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs 753 (1093)
...+|+||+|.|||.+..||.-.++|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~~l~g~ 52 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFFALFGA 52 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 468999999999999999999888876
No 466
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=62.53 E-value=3.9 Score=39.32 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-+++.|++|+|||.+..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999988753
No 467
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=62.46 E-value=3.9 Score=46.94 Aligned_cols=35 Identities=14% Similarity=0.373 Sum_probs=26.0
Q ss_pred HHHHHHhCCceEEEEcccccccCHHHHHHHhhhhcC
Q 001355 796 IYQEFRSKPYSVVFLEDLDKAADPIVQSSLTKAIST 831 (1093)
Q Consensus 796 l~eal~~~p~~VI~LDEVDkiad~~vq~~Ll~aLe~ 831 (1093)
|..++-.+| .||+|||--.-+|+..+..+.+.|..
T Consensus 166 lARAL~~~P-~lLLLDEPts~LD~~~~~~l~~~l~~ 200 (390)
T 3gd7_A 166 LARSVLSKA-KILLLDEPSAHLDPVTYQIIRRTLKQ 200 (390)
T ss_dssp HHHHHHTTC-CEEEEESHHHHSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCC-CEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 445555555 59999998754798888888888864
No 468
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=62.42 E-value=4.2 Score=39.97 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.-++|.|++|+|||.+..+|...-
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999887643
No 469
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=62.27 E-value=6.8 Score=46.87 Aligned_cols=44 Identities=18% Similarity=0.074 Sum_probs=29.9
Q ss_pred CccHHHHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 695 GWQDEAICTISQAVSRWRIGNGRDVGSNSKRGIWLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 695 iGQdeai~~Ia~aI~~~rsg~~~~~~~~~k~~~~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
..|.+++..+...+... . -.+++.+|+|+|||.+|-.++..+..
T Consensus 181 ~~Q~~ai~~~~~~~~~~---~-----------~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 181 YYQQIAINRAVQSVLQG---K-----------KRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp HHHHHHHHHHHHHHHTT---C-----------SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC---C-----------CceEEEecCCCChHHHHHHHHHHHHh
Confidence 34666666666555321 0 13788999999999998887776643
No 470
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=62.15 E-value=6.4 Score=47.33 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=31.1
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhccCCCceEEeecC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVS 763 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s 763 (1093)
.++++.|..|+|||++|-.||..+-..+.+.+.||+.
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 3789999999999999999998887666677777766
No 471
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=62.04 E-value=4.3 Score=40.20 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
.-+++.|++|+|||.+.+.+...-|
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5689999999999999999886443
No 472
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=62.00 E-value=4.3 Score=40.20 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.9
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHH
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
..-++|.|++|+|||.+...|...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 357999999999999999998753
No 473
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=61.84 E-value=5.6 Score=39.27 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-+++.|++|+|||.+..+|...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999988764
No 474
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=61.77 E-value=4.9 Score=39.12 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-+++.|++|+|||.+...+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999988753
No 475
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=61.57 E-value=4.1 Score=39.62 Aligned_cols=22 Identities=27% Similarity=0.438 Sum_probs=19.3
Q ss_pred eEEEeeCCCCChHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
.-+++.|++|+|||.+..+|..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999988753
No 476
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=61.53 E-value=4.2 Score=39.54 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.-+++.|++|+|||.+..+|...-
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 569999999999999999987653
No 477
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=61.47 E-value=4.6 Score=39.20 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.0
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.-+++.|++|+|||.+...|...-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999999987643
No 478
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=61.43 E-value=20 Score=38.84 Aligned_cols=84 Identities=8% Similarity=0.064 Sum_probs=49.7
Q ss_pred CCchhhHHHHHHHhhcc--cccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCc
Q 001355 209 DDVDENCRRIGEVLAGR--DEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRV 283 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~--~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~ 283 (1093)
+|+++.++++.+.+.+- ..+..++.+|.|++|+| .++.++..+. ..++.+. ...+ .
T Consensus 15 ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~-------------~~~~~~~--~~~~----~ 75 (324)
T 1hqc_A 15 IGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG-------------VNLRVTS--GPAI----E 75 (324)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT-------------CCEEEEC--TTTC----C
T ss_pred hCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC-------------CCEEEEe--cccc----C
Confidence 47888877777776520 01234789999999998 4667766542 2344443 2211 1
Q ss_pred cHHHHHHHHHHHHHHhhccCCCcEEEEeCcchhhh
Q 001355 284 NVEMMMLKFKEVESAVGRCSGPGVVVNYGELKVLV 318 (1093)
Q Consensus 284 ~r~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v 318 (1093)
..+ ++...+......+.+|||||++++-
T Consensus 76 ~~~-------~l~~~l~~~~~~~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 76 KPG-------DLAAILANSLEEGDILFIDEIHRLS 103 (324)
T ss_dssp SHH-------HHHHHHTTTCCTTCEEEETTTTSCC
T ss_pred ChH-------HHHHHHHHhccCCCEEEEECCcccc
Confidence 122 2333344312557799999999875
No 479
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=60.92 E-value=4.7 Score=39.42 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-++|.|++|+|||.+...|...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 57999999999999999988753
No 480
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=60.68 E-value=3 Score=42.16 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
..+.|.|++|+|||++.++|..
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999988753
No 481
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=60.65 E-value=4.8 Score=40.09 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.-++|.|++|+|||.|...|...-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 579999999999999999887643
No 482
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=60.41 E-value=7.4 Score=41.25 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=30.4
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCCceEEeecCCc
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKGKLIHVDVSSE 765 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~~fv~id~s~~ 765 (1093)
+.|.|.-|+|||++|-.||..+-..+.+.+.||+...
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred EEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 4557999999999999999988766777888888753
No 483
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=60.21 E-value=5.7 Score=44.30 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=22.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
...+|+||+|+|||.+..+|.-.+++
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l~~ 49 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 35789999999999999999877765
No 484
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=60.00 E-value=3.2 Score=44.01 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=22.8
Q ss_pred EEeeCCCCChHHHHHHHHHHHhccCCC
Q 001355 729 LAFLGPDKVGKKKIASALAEIVFGNKG 755 (1093)
Q Consensus 729 LLf~Gp~GvGKT~lAraLA~~lfgs~~ 755 (1093)
+.+.||+|+|||++.++|+-.++....
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCC
Confidence 467899999999999999998865543
No 485
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=60.00 E-value=14 Score=39.77 Aligned_cols=117 Identities=14% Similarity=0.149 Sum_probs=66.1
Q ss_pred CCchhhHHHHHHHhhcccccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccH
Q 001355 209 DDVDENCRRIGEVLAGRDEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNV 285 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r 285 (1093)
.|+++.++.+.+.+.+ ++..+.+|.|++|+| .++.++..+... + .+..++.++ .+... ..
T Consensus 20 ~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKt~la~~l~~~l~~~--~------~~~~~~~~~--~~~~~----~~ 82 (319)
T 2chq_A 20 VGQDEVIQRLKGYVER---KNIPHLLFSGPPGTGKTATAIALARDLFGE--N------WRDNFIEMN--ASDER----GI 82 (319)
T ss_dssp CSCHHHHHHHHTTTTT---TCCCCEEEESSSSSSHHHHHHHHHHHHHTT--C------HHHHCEEEE--TTSTT----CT
T ss_pred hCCHHHHHHHHHHHhC---CCCCeEEEECcCCcCHHHHHHHHHHHhcCC--c------ccCCeEEEe--Ccccc----Ch
Confidence 4688888887777776 555678999999998 477777776431 0 123345554 22211 11
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEEEec
Q 001355 286 EMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLIGAA 352 (1093)
Q Consensus 286 ~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwliG~a 352 (1093)
+.+...++++.....-..+.+.||+|+|++.+-.. +...+-+++. .....+.+|.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---------~~~~L~~~le-~~~~~~~~i~~~ 139 (319)
T 2chq_A 83 DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD---------AQAALRRTME-MYSKSCRFILSC 139 (319)
T ss_dssp TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH---------HHHTTGGGTS-SSSSSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH---------HHHHHHHHHH-hcCCCCeEEEEe
Confidence 22222333332111111155799999999987431 1223455554 223567888874
No 486
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=59.90 E-value=4.4 Score=39.34 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.2
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-+++.|++|+|||.+..+|...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999988753
No 487
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=59.85 E-value=4.9 Score=39.91 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.7
Q ss_pred eEEEeeCCCCChHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAE 748 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~ 748 (1093)
..+++.|++|+|||.+...|..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999988864
No 488
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=59.48 E-value=5.5 Score=39.28 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.0
Q ss_pred eEEEeeCCCCChHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALA 747 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA 747 (1093)
.-+++.|++|+|||.+...+.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFN 39 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999988875
No 489
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=59.47 E-value=6.1 Score=39.51 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.5
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-+++.|++|+|||.+...|...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999988764
No 490
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=59.46 E-value=8.3 Score=43.47 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=32.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc--cCCCceEEeecCC
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF--GNKGKLIHVDVSS 764 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf--gs~~~fv~id~s~ 764 (1093)
.++++.|..|+|||++|-.||..+- ..+...+.+|+..
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 3799999999999999999998887 6677778888763
No 491
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=59.40 E-value=18 Score=38.96 Aligned_cols=117 Identities=11% Similarity=0.099 Sum_probs=65.5
Q ss_pred CCchhhHHHHHHHhhcccccCCCCcEEeccchhh---HHHHHHHHHhcCCCCCCCccccCcEEEEeechhhhhhcCCccH
Q 001355 209 DDVDENCRRIGEVLAGRDEKKGKNPLLVGVCANS---ALKGFVESVNGGKVGLFPRQIYGLDVVCVEYEINEFVGGRVNV 285 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~---a~~~~~~~i~~~~~g~vp~~L~~~~v~~l~~e~~~~~a~~~~r 285 (1093)
.|+++.++.+.+.+.. ++-.+.+|.|++|+| .++.++..+... + ....++.++ .+... ..
T Consensus 28 ~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~la~~l~~~l~~~--~------~~~~~~~~~--~~~~~----~~ 90 (327)
T 1iqp_A 28 VGQEHIVKRLKHYVKT---GSMPHLLFAGPPGVGKTTAALALARELFGE--N------WRHNFLELN--ASDER----GI 90 (327)
T ss_dssp CSCHHHHHHHHHHHHH---TCCCEEEEESCTTSSHHHHHHHHHHHHHGG--G------HHHHEEEEE--TTCHH----HH
T ss_pred hCCHHHHHHHHHHHHc---CCCCeEEEECcCCCCHHHHHHHHHHHhcCC--c------ccCceEEee--ccccC----ch
Confidence 4788888888888887 555678899999998 477777776431 0 122344444 21110 11
Q ss_pred HHHHHHHHHHHHHhhccCCCcEEEEeCcchhhhcCCCcchHHHHHHHHHHhhhcCCCCCcEEEEEec
Q 001355 286 EMMMLKFKEVESAVGRCSGPGVVVNYGELKVLVSDSVSTEAARFVVSQLTSLLKSGNGEKLWLIGAA 352 (1093)
Q Consensus 286 ~e~e~rlkel~~~v~~~~~~gvil~igdl~~~v~~~~~~~~~~~~v~el~~Ll~~~~~g~lwliG~a 352 (1093)
..+...+++......-..+++.||+|||++.+-. .+ ...|-+++. .....+.+|.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----~~----~~~L~~~le-~~~~~~~~i~~~ 147 (327)
T 1iqp_A 91 NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----DA----QQALRRTME-MFSSNVRFILSC 147 (327)
T ss_dssp HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----HH----HHHHHHHHH-HTTTTEEEEEEE
T ss_pred HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----HH----HHHHHHHHH-hcCCCCeEEEEe
Confidence 2222333333211100015688999999998743 11 223445554 223457778763
No 492
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=59.40 E-value=5.2 Score=39.00 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.4
Q ss_pred eEEEeeCCCCChHHHHHHHHHHH
Q 001355 727 IWLAFLGPDKVGKKKIASALAEI 749 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~ 749 (1093)
.-+++.|++|+|||.+...|...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999988754
No 493
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=59.35 E-value=7.5 Score=48.79 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=20.8
Q ss_pred EEEeeCCCCChHHHHHHHHHHHhcc
Q 001355 728 WLAFLGPDKVGKKKIASALAEIVFG 752 (1093)
Q Consensus 728 ~LLf~Gp~GvGKT~lAraLA~~lfg 752 (1093)
.+++.||+|||||+++..+...+..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999988877776654
No 494
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=59.27 E-value=4.9 Score=39.43 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.4
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..-++|.|++|+|||.+..+|....
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3678999999999999999887543
No 495
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=59.20 E-value=5.2 Score=39.50 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=20.8
Q ss_pred CeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 726 GIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 726 ~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
..-++|.|++|+|||.|.+.|....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3579999999999999998776543
No 496
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=59.15 E-value=4.8 Score=39.56 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=20.8
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.-++|.|++|+|||.+...|...-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 569999999999999999887543
No 497
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=59.09 E-value=5.4 Score=45.40 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=21.9
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHhc
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIVF 751 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~lf 751 (1093)
-.+.+.||+|+|||++.+.|+..+-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC
Confidence 3689999999999999999997653
No 498
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=59.06 E-value=11 Score=41.34 Aligned_cols=42 Identities=7% Similarity=0.014 Sum_probs=29.2
Q ss_pred CCchhhHHHHHHHhhcccccCCCCcEEeccchhh---HHHHHHHHH
Q 001355 209 DDVDENCRRIGEVLAGRDEKKGKNPLLVGVCANS---ALKGFVESV 251 (1093)
Q Consensus 209 ~~rdeeirrv~~vL~R~~~~~k~NpvlVGe~~~~---a~~~~~~~i 251 (1093)
+|++..++++.+.+.+ -.+...+.+|.|++|+| +++.+....
T Consensus 5 ig~s~~~~~~~~~~~~-~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 5 IGSSPAMQHLLNEIAM-VAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCSHHHHHHHHHHHH-HCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred EECCHHHHHHHHHHHH-HhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 4678888888887764 11345688889999998 356665543
No 499
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=58.92 E-value=5.5 Score=39.67 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=22.5
Q ss_pred CCCeEEEeeCCCCChHHHHHHHHHHHh
Q 001355 724 KRGIWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 724 k~~~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
+...-+++.|++|+|||.+...|...-
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCC
Confidence 445789999999999999999887543
No 500
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=58.82 E-value=5.4 Score=39.04 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=20.6
Q ss_pred eEEEeeCCCCChHHHHHHHHHHHh
Q 001355 727 IWLAFLGPDKVGKKKIASALAEIV 750 (1093)
Q Consensus 727 ~~LLf~Gp~GvGKT~lAraLA~~l 750 (1093)
.-+++.|++|+|||.+...+...-
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 569999999999999999887543
Done!