BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001356
(1093 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/1027 (43%), Positives = 636/1027 (61%), Gaps = 32/1027 (3%)
Query: 84 SDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVV 143
+IDE L+SRQL V G+E M ++ SN+LI G++GLG EIAKN++LAGVKS+T+ D V
Sbjct: 3 GEIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPV 62
Query: 144 ELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFTD- 202
+L DLS+ F +E D+G+ R + KL ELN V ++ L + +LS FQ VV TD
Sbjct: 63 QLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDSLDDVTQLSQFQVVVATDT 122
Query: 203 ISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIASI 262
+SLE V+ +++CH+ I FI SE RGLFGN F D G EFTV D GEEP TG+++ I
Sbjct: 123 VSLEDKVKINEFCHSSG--IRFISSETRGLFGNTFVDLGDEFTVLDPTGEEPRTGMVSDI 180
Query: 263 SNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDTTNY 322
D ++ +DD R +DG+ V FSEV G+ +LNDG KV+ P++F I Y
Sbjct: 181 EPDG--TVTMLDDNRHGLEDGNFVRFSEVEGLDKLNDGTLFKVEVLGPFAFRIGS-VKEY 237
Query: 323 SAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKF-IQ 381
Y+KGGI T+VK P+ I+FK L++ L +P +F+ SDF+KFDR LHL FQAL +F ++
Sbjct: 238 GEYKKGGIFTEVKVPRKISFKSLKQQLSNP-EFVFSDFAKFDRAAQLHLGFQALHQFAVR 296
Query: 382 ELGRFPVAGSEEDAQKIISLFTNINDNLADERVEEID--HKLLCHFAFGARAVLNPMAAM 439
G P ++EDA ++I L T+++ + E +D L+ ++ AR + + A
Sbjct: 297 HNGELPRTMNDEDANELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAF 356
Query: 440 FGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPSE---PLDPRDLQPLNSRYDAQISVFG 496
FGG+V QEV+KACSGKF PL QF YFDS+ESLP P + + QP+NSRYD QI+VFG
Sbjct: 357 FGGLVAQEVLKACSGKFTPLKQFMYFDSLESLPDPKNFPRNEKTTQPVNSRYDNQIAVFG 416
Query: 497 SKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLF 556
QKK+ +KVF+VGSGA+GCE LKN AL+G+ G+ G + +TD+D IEKSNL+RQFLF
Sbjct: 417 LDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLF 476
Query: 557 RDWNIGQAKSTVXXXXXXLINPHLNTE--ALQIRANPETENVFNDTFWEXXXXXXXXXXX 614
R ++G+ KS V +NP L + A + PETE +FND+FWE
Sbjct: 477 RPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDN 536
Query: 615 XXXRLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSF 674
R Y+D+RC++++KPLLESGTLG K NTQ++IP LTE+Y +SRDPPEK P+CT+ SF
Sbjct: 537 VDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSF 596
Query: 675 PHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLD 734
P+ IDH + WA+S F+G + VN YLT P +K +GD + VLE +
Sbjct: 597 PNKIDHTIAWAKSLFQGYFTDSAENVNMYLTQPNFVEQTLKQSGDVKG------VLESIS 650
Query: 735 ---KERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQ 791
+ F+DCI WARL FE F +KQL F FP++A TSNG PFWS KR P PL+
Sbjct: 651 DSLSSKPHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLE 710
Query: 792 FSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPV--KLADAVNKVIVPDFQPKENVKIE 849
F + + H F++A + LRA YGI D P + ++ +I+P+F P N+KI+
Sbjct: 711 FDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQ 770
Query: 850 TDEKATSMSTGSIDDAVVINXXXXXXXXXXXXXPTGYKMNPIQFEKDDDTNFHMDLIAGL 909
++ + + + + I+ G+K+ P+ FEKDDDTN H++ I
Sbjct: 771 VNDDDPDPNANAANGSDEIDQLVSSLPDPSTL--AGFKLEPVDFEKDDDTNHHIEFITAC 828
Query: 910 ANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNT 969
+N RA+NY I D+ K KFIAGRIIPAIAT+T++ TGLV LELYK++D +E Y+N
Sbjct: 829 SNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNG 888
Query: 970 FANLALPLFSMAEPVPPKVFKHQDMSW-TVWDRWILRDNPTLRQLLQWLQ-DKGLNAYSI 1027
F NLALP F +EP+ ++ + + +WDR+ ++ + L L++ + D+GL +
Sbjct: 889 FVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRFDIKGDIKLSDLIEHFEKDEGLEITML 948
Query: 1028 SYGSCLLFNSMFP--RHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDI 1085
SYG LL+ S FP + KER++ + LV+ V K ++P + + + D++ D+++
Sbjct: 949 SYGVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAHVSTMILEICADDKEGEDVEV 1008
Query: 1086 PQISIYF 1092
P I+I+
Sbjct: 1009 PFITIHL 1015
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In
Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1
(uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1
(uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/1014 (42%), Positives = 630/1014 (62%), Gaps = 27/1014 (2%)
Query: 86 IDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVEL 145
IDE L+SRQL V G E M+++ SN+LI G +GLG EIAKN+ LAGVKSVTL+D +
Sbjct: 4 IDEGLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRI 63
Query: 146 WDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFTDISL 205
DLSS + +EDD+G RA ++ KL ELN V +S + EL+ E L +F+ VV T+ SL
Sbjct: 64 EDLSSQYFLTEDDIGVPRAKVTVSKLAELNQYVPVSVVD-ELSTEYLKNFKCVVVTETSL 122
Query: 206 EKAVEFDDYCH-NHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIASISN 264
K +E +D+ H NH IA+I ++ RGLFG+IFCDFG F D DG EP TG+IASI++
Sbjct: 123 TKQLEINDFTHKNH---IAYIAADSRGLFGSIFCDFGENFICTDTDGNEPLTGMIASITD 179
Query: 265 DNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDTTNYSA 324
D +++ +++ R ++GD V F+EV GM LNDG PRKV+ PY+FSI + +
Sbjct: 180 DG--VVTMLEETRHGLENGDFVKFTEVKGMPGLNDGTPRKVEVKGPYTFSIG-SVKDLGS 236
Query: 325 YEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQ-EL 383
G+ TQVK P I+FK LRE+LKDP +++ DF K RPP H+AFQAL F
Sbjct: 237 AGYNGVFTQVKVPTKISFKSLRESLKDP-EYVYPDFGKMMRPPQYHIAFQALSAFADAHE 295
Query: 384 GRFPVAGSEEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGI 443
G P ++ DA + I L + E+D KL+ ++ AR L M+A GG
Sbjct: 296 GSLPRPRNDIDAAEFFEFCKKIASTLQFDV--ELDEKLIKEISYQARGDLVAMSAFLGGA 353
Query: 444 VGQEVVKACSGKFHPLLQFFYFDSVESLPSE-PLDPRDLQPLNSRYDAQISVFGSKLQKK 502
V QEV+KA + KF+PL Q+FYFDS+ESLPS + +P RYD QI+VFGS+ Q+K
Sbjct: 354 VAQEVLKATTSKFYPLKQYFYFDSLESLPSSVTISEETCKPRGCRYDGQIAVFGSEFQEK 413
Query: 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 562
+ F+VG+GA+GCE LKN A+MGV+ G G +++TD D IEKSNL+RQFLFR ++G
Sbjct: 414 IASLSTFLVGAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQFLFRPRDVG 473
Query: 563 QAKSTVXXXXXXLINPHLNTE--ALQIRANPETENVFNDTFWEXXXXXXXXXXXXXXRLY 620
+ KS ++NP L + + Q R PE+E +F D F+E R+Y
Sbjct: 474 KLKSECASTAVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNALDNVEARMY 533
Query: 621 IDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDH 680
+D+RC++F+KPLLESGTLG K NTQ+V+PHLTE+YG+S+DPPEK P+CT+ +FP+ I+H
Sbjct: 534 VDRRCVFFEKPLLESGTLGTKGNTQVVVPHLTESYGSSQDPPEKSFPICTLKNFPNRIEH 593
Query: 681 CLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCET 740
+ WAR FEGL ++ VN YL+SP +++K + + R+ L+ + + L E+ +
Sbjct: 594 TIAWARDLFEGLFKQPIDNVNMYLSSPNFLETSLKTS--SNPREVLENIRDYLVTEKPLS 651
Query: 741 FQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHL 800
F++CI WARL+F+ +F + ++QL F FP+++ TS G PFWS PKR P PL F + + H
Sbjct: 652 FEECIMWARLQFDKFFNNNIQQLLFNFPKDSVTSTGQPFWSGPKRAPTPLSFDIHNREHF 711
Query: 801 QFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTG 860
F++AA+ L A YG+ P + P F PK +KI+ +E + T
Sbjct: 712 DFIVAAASLYAFNYGL---KSETDPAIYERVLAGYNPPPFAPKSGIKIQVNENEEAPETA 768
Query: 861 SIDDAVVINXXXXXXXXXXXXXPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIP 920
+ D + G+++ P +FEKDDD+N H+D I +N+RA NY I
Sbjct: 769 ANKDKQELKSIADSLPPPSSL--VGFRLTPAEFEKDDDSNHHIDFITAASNLRAMNYDIT 826
Query: 921 EVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSM 980
D+ K KF+AG+I+PA+ TSTA+ +GLVCLEL K++DG K+E+Y+N F NLA+ LF+
Sbjct: 827 PADRFKTKFVAGKIVPAMCTSTAVVSGLVCLELVKLVDGKKKIEEYKNGFFNLAIGLFTF 886
Query: 981 AEPVP-PKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQ-DKGLNAYSISYGSCLLFNSM 1038
++P+ PK+ + +WDR+ L D TL++L+ + Q ++GL +S G LL+ +
Sbjct: 887 SDPIASPKMKVNGKEIDKIWDRYNLPDC-TLQELIDYFQKEEGLEVTMLSSGVSLLYANF 945
Query: 1039 FPRHK--ERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISI 1090
P K ER+ K+ +LV + K +L P+R+H + + C D + D+++P I I
Sbjct: 946 QPPKKLAERLPLKISELVEQITKKKLEPFRKHLVLEICCDDANGEDVEVPFICI 999
>pdb|1Z7L|A Chain A, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|B Chain B, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|C Chain C, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
Length = 276
Score = 207 bits (526), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 155/273 (56%), Gaps = 7/273 (2%)
Query: 663 EKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQA 722
EK P+CT+ +FP+ I+H L WAR EFEGL ++ VN YLT ++ AG Q
Sbjct: 11 EKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTLRLAG-TQP 69
Query: 723 RDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSA 782
+ L+ V L +R +T+ DC+TWA + + + ++QL FP + TS+G PFWS
Sbjct: 70 LEVLEAVQRSLVLQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSG 129
Query: 783 PKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQP 842
PKR P PL F V++ HL ++MAA+ L A+TYG+ + +A + V VP+F P
Sbjct: 130 PKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGL---TGSQDRAAVASLLQSVQVPEFTP 186
Query: 843 KENVKIETDEKATSMSTGSIDDAVVINXXXXXXXXXXXXXPTGYKMNPIQFEKDDDTNFH 902
K VKI ++ + S+DD+ + G+KM PI FEKDDD+NFH
Sbjct: 187 KSGVKIHVSDQELQSANASVDDSRLEELKATLPSPDKL---PGFKMYPIDFEKDDDSNFH 243
Query: 903 MDLIAGLANMRARNYGIPEVDKLKAKFIAGRII 935
MD I +N+RA NY I D+ K+K IAG+II
Sbjct: 244 MDFIVAASNLRAENYDISPADRHKSKLIAGKII 276
>pdb|2V31|A Chain A, Structure Of First Catalytic Cysteine Half-Domain Of Mouse
Ubiquitin-Activating Enzyme
Length = 112
Score = 108 bits (271), Expect = 1e-23, Method: Composition-based stats.
Identities = 51/111 (45%), Positives = 78/111 (70%), Gaps = 1/111 (0%)
Query: 239 DFGPEFTVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELN 298
+FG E + D +GE+P + +++ ++ DNP +++C+D+ R F+ GD V FSEV GM +LN
Sbjct: 1 EFGEEMVLTDSNGEQPLSAMVSMVTKDNPGVVTCLDEARHGFETGDFVSFSEVQGMIQLN 60
Query: 299 DGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFKPLREAL 349
+P ++K PY+FSI DT+N+S Y +GGIV+QVK PK I+FK L +L
Sbjct: 61 GCQPMEIKVLGPYTFSIC-DTSNFSDYIRGGIVSQVKVPKKISFKSLPASL 110
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 113/406 (27%), Positives = 174/406 (42%), Gaps = 92/406 (22%)
Query: 80 NGNPSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHD 139
G S+ + + RQ+ ++G E +RL AS +L+ G++GLGAEIAKNLILAGVK +T+ D
Sbjct: 8 GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD 67
Query: 140 EGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTKEKLSDFQAVV 199
V D + F+ VG+NRA AS+++ Q LN V + T ++ K+ S F
Sbjct: 68 HEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFF---- 123
Query: 200 FTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGII 259
+FD C +K +
Sbjct: 124 ---------TQFDAVCLTCCSRDVIVK--------------------------------V 142
Query: 260 ASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGK----PRKVKNARPYSFSI 315
I + N I+F GD+ + HG T N G+ K K A+ S +
Sbjct: 143 DQICHKNS----------IKFFTGDVFGY---HGYTFANLGEHEFVEEKTKVAK-VSQGV 188
Query: 316 DEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSK------FDRPPVL 369
++ A T VK K + F P++EAL+ D+S R
Sbjct: 189 EDGPDTKRAKLDSSETTMVK--KKVVFCPVKEALE-------VDWSSEKAKAALKRTTSD 239
Query: 370 HLAFQALDKFIQELGRFPVAGS-EEDAQKIISLFTNINDNLADERVEEIDHKLL----CH 424
+ Q L KF + GR P + + EED++ ++ + ++ D+L I LL
Sbjct: 240 YFLLQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLG------ISPDLLPEDFVR 293
Query: 425 FAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVES 470
+ F A P+ A+ GGI+ QE+VKA S + P FF+FD ++
Sbjct: 294 YCFSEMA---PVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKG 336
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 486 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVI 545
++YD QI ++G + QK+L ++V +VG LG E KNL L GV LT+ D + +
Sbjct: 17 AQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVK-----GLTMLDHEQV 71
Query: 546 EKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLN--TEALQIRANPET 593
+ QFL R ++G+ ++ +NP ++ + I PE+
Sbjct: 72 TPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPES 121
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 14/206 (6%)
Query: 499 LQKKLEEA----KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQF 554
L ++L EA +V VVG+G +GCE LKNL L G S + + D D I+ SNL+RQF
Sbjct: 9 LPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFS-----HIDLIDLDTIDVSNLNRQF 63
Query: 555 LFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIR-ANPETENVFNDTFWEXXXXXXXXXX 613
LF+ ++G++K+ V P N A NP+ +N F+
Sbjct: 64 LFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPD----YNVEFFRQFILVMNALD 119
Query: 614 XXXXRLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHS 673
R ++++ CL PL+ESGT G + +TE Y P ++ P CT+ +
Sbjct: 120 NRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRN 179
Query: 674 FPHNIDHCLTWARSEFEGLLEKTPAE 699
P HC+ WA+ F L + A+
Sbjct: 180 TPSEPIHCIVWAKYLFNQLFGEEDAD 205
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 893 FEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLE 952
++KDD + MD + AN+R + + + K +AG IIPAIAT+ A+ GL+ LE
Sbjct: 346 WDKDDPS--AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLE 403
Query: 953 LYKVLDGGHKLEDYRNTFAN 972
K+L G K++ R F N
Sbjct: 404 GLKILSG--KIDQCRTIFLN 421
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 100 RETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDV 159
RE + +L+ G G+G E+ KNL+L G + L D +++ +L+ F+F + V
Sbjct: 11 RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 70
Query: 160 GKNRA 164
G+++A
Sbjct: 71 GRSKA 75
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 14/206 (6%)
Query: 499 LQKKLEEA----KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQF 554
L ++L EA +V VVG+G +GCE LKNL L G S + + D D I+ SNL+RQF
Sbjct: 27 LPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFS-----HIDLIDLDTIDVSNLNRQF 81
Query: 555 LFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIR-ANPETENVFNDTFWEXXXXXXXXXX 613
LF+ ++G++K+ V P N A NP+ +N F+
Sbjct: 82 LFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPD----YNVEFFRQFILVMNALD 137
Query: 614 XXXXRLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHS 673
R ++++ CL PL+ESGT G + +TE Y P ++ P CT+ +
Sbjct: 138 NRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGCTIRN 197
Query: 674 FPHNIDHCLTWARSEFEGLLEKTPAE 699
P HC+ WA+ F L + A+
Sbjct: 198 TPSEPIHCIVWAKYLFNQLFGEEDAD 223
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 893 FEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLE 952
++KDD + MD + AN+R + + + K +AG IIPAIAT+ A+ GL+ LE
Sbjct: 364 WDKDDPS--AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLE 421
Query: 953 LYKVLDGGHKLEDYRNTFAN 972
K+L G K++ R F N
Sbjct: 422 GLKILSG--KIDQCRTIFLN 439
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 100 RETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDV 159
RE + +L+ G G+G E+ KNL+L G + L D +++ +L+ F+F + V
Sbjct: 29 RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 88
Query: 160 GKNRA 164
G+++A
Sbjct: 89 GRSKA 93
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 95/204 (46%), Gaps = 28/204 (13%)
Query: 499 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 558
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 44 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 98
Query: 559 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 616
+IG+ K+ V LN P + FNDTF+
Sbjct: 99 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 151
Query: 617 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 662
R +I+ + PL++ GT G K N ++++P +T + + PP
Sbjct: 152 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 211
Query: 663 EKQAPMCTVHSFPHNIDHCLTWAR 686
+ PMCT+ S P +HC+ + R
Sbjct: 212 QVNFPMCTIASMPRLPEHCIEYVR 235
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 111 ILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQK 170
+L+ G GLG E+ KNL L+G + + + D +++ +L+ F+F D+G+ +A + +
Sbjct: 53 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 112
Query: 171 LQE 173
L +
Sbjct: 113 LND 115
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 896 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 955
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 252 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 311
Query: 956 V 956
+
Sbjct: 312 I 312
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 95/204 (46%), Gaps = 28/204 (13%)
Query: 499 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 558
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 63 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 117
Query: 559 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 616
+IG+ K+ V LN P + FNDTF+
Sbjct: 118 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 170
Query: 617 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 662
R +I+ + PL++ GT G K N ++++P +T + + PP
Sbjct: 171 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 230
Query: 663 EKQAPMCTVHSFPHNIDHCLTWAR 686
+ PMCT+ S P +HC+ + R
Sbjct: 231 QVNFPMCTIASMPRLPEHCIEYVR 254
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 111 ILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQK 170
+L+ G GLG E+ KNL L+G + + + D +++ +L+ F+F D+G+ +A + +
Sbjct: 72 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 131
Query: 171 LQE 173
L +
Sbjct: 132 LND 134
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 896 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 955
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 271 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 330
Query: 956 VLDGGH 961
+ +
Sbjct: 331 IATSAY 336
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 95/204 (46%), Gaps = 28/204 (13%)
Query: 499 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 558
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 559 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 616
+IG+ K+ V LN P + FNDTF+
Sbjct: 89 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 141
Query: 617 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 662
R +I+ + PL++ GT G K N ++++P +T + + PP
Sbjct: 142 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 201
Query: 663 EKQAPMCTVHSFPHNIDHCLTWAR 686
+ PMCT+ S P +HC+ + R
Sbjct: 202 QVNFPMCTIASMPRLPEHCIEYVR 225
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 111 ILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRA 164
+L+ G GLG E+ KNL L+G + + + D +++ +L+ F+F D+G+ +A
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKA 96
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 896 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 955
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 956 VLDGGH 961
+ +
Sbjct: 302 IATSAY 307
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 97/206 (47%), Gaps = 14/206 (6%)
Query: 499 LQKKLEEA----KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQF 554
L ++L EA +V VVG+G +GCE LKNL L G S + + D D I+ SNL+RQF
Sbjct: 7 LPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFS-----HIDLIDLDTIDVSNLNRQF 61
Query: 555 LFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIR-ANPETENVFNDTFWEXXXXXXXXXX 613
LF+ ++G++K+ V P N A NP+ +N F+
Sbjct: 62 LFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPD----YNVEFFRQFILVMNALD 117
Query: 614 XXXXRLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHS 673
R ++++ CL PL+ESGT G + +TE Y P ++ P T+ +
Sbjct: 118 NRAARNHVNRMCLAADVPLIESGTAGYLGQVTTIKKGVTECYECHPKPTQRTFPGATIRN 177
Query: 674 FPHNIDHCLTWARSEFEGLLEKTPAE 699
P HC+ WA+ F L + A+
Sbjct: 178 TPSEPIHCIVWAKYLFNQLFGEEDAD 203
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 893 FEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLE 952
++KDD + MD + AN+R + + + K +AG IIPAIAT+ A+ GL+ LE
Sbjct: 344 WDKDDPS--AMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLE 401
Query: 953 LYKVLDGGHKLEDYRNTFAN 972
K+L G K++ R F N
Sbjct: 402 GLKILSG--KIDQCRTIFLN 419
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 100 RETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDV 159
RE + +L+ G G+G E+ KNL+L G + L D +++ +L+ F+F + V
Sbjct: 9 RELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV 68
Query: 160 GKNRA 164
G+++A
Sbjct: 69 GRSKA 73
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 95/204 (46%), Gaps = 28/204 (13%)
Query: 499 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 558
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 405 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 459
Query: 559 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 616
+IG+ K+ V LN P + FNDTF+
Sbjct: 460 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 512
Query: 617 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 662
R +I+ + PL++ GT G K N ++++P +T + + PP
Sbjct: 513 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 572
Query: 663 EKQAPMCTVHSFPHNIDHCLTWAR 686
+ PMCT+ S P +HC+ + R
Sbjct: 573 QVNFPMCTIASMPRLPEHCIEYVR 596
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 111 ILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQK 170
+L+ G GLG E+ KNL L+G + + + D +++ +L+ F+F D+G+ +A + +
Sbjct: 414 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 473
Query: 171 LQE 173
L +
Sbjct: 474 LND 476
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 896 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 955
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 613 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 672
Query: 956 VLDGGH 961
+ +
Sbjct: 673 IATSAY 678
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 28/204 (13%)
Query: 499 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 558
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 559 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 616
+IG+ K+ V LN P + FNDTF+
Sbjct: 89 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 141
Query: 617 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 662
R +I+ + PL++ GT G K N Q+++P +T + + PP
Sbjct: 142 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAQVILPGMTACIECTLELYPP 201
Query: 663 EKQAPMCTVHSFPHNIDHCLTWAR 686
+ PM T+ S P +HC+ + R
Sbjct: 202 QVNFPMATIASMPRLPEHCIEYVR 225
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 111 ILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRA 164
+L+ G GLG E+ KNL L+G + + + D +++ +L+ F+F D+G+ +A
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKA 96
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 896 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 955
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 956 VLDGGH 961
+ +
Sbjct: 302 IATSAY 307
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 94/204 (46%), Gaps = 28/204 (13%)
Query: 499 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 558
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 559 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 616
+IG+ K+ V LN P + FNDTF+
Sbjct: 89 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 141
Query: 617 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 662
R +I+ + PL++ GT G K N ++++P +T + + PP
Sbjct: 142 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 201
Query: 663 EKQAPMCTVHSFPHNIDHCLTWAR 686
+ PM T+ S P +HC+ + R
Sbjct: 202 QVNFPMATIASMPRLPEHCIEYVR 225
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 111 ILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRA 164
+L+ G GLG E+ KNL L+G + + + D +++ +L+ F+F D+G+ +A
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKA 96
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 896 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 955
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 956 VLDGGH 961
+ +
Sbjct: 302 IATSAY 307
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 94/204 (46%), Gaps = 28/204 (13%)
Query: 499 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 558
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 31 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 85
Query: 559 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 616
+IG+ K+ V LN P + FNDTF+
Sbjct: 86 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 138
Query: 617 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 662
R +I+ + PL++ GT G K N ++++P +T + + PP
Sbjct: 139 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPP 198
Query: 663 EKQAPMCTVHSFPHNIDHCLTWAR 686
+ PM T+ S P +HC+ + R
Sbjct: 199 QVNFPMATIASMPRLPEHCIEYVR 222
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 111 ILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQK 170
+L+ G GLG E+ KNL L+G + + + D +++ +L+ F+F D+G+ +A + +
Sbjct: 40 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEF 99
Query: 171 LQE 173
L +
Sbjct: 100 LND 102
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 896 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 955
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 239 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 298
Query: 956 VLDGGH 961
+ +
Sbjct: 299 IATSAY 304
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 93/204 (45%), Gaps = 28/204 (13%)
Query: 499 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 558
LQ L+ KV V+G+G LGCE LKNLAL G ++ + D D I+ SNL+RQFLFR
Sbjct: 34 LQFLLDTCKVLVIGAGGLGCELLKNLALSGFR-----QIHVIDMDTIDVSNLNRQFLFRP 88
Query: 559 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETENV--FNDTFWEXXXXXXXXXXXXX 616
+IG+ K+ V LN P + FNDTF+
Sbjct: 89 KDIGRPKAEVAAE-------FLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSII 141
Query: 617 XRLYIDQRCLYFQK------------PLLESGTLGAKCNTQMVIPHLTENYGASRD--PP 662
R +I+ + PL++ GT G K N +++P +T + + PP
Sbjct: 142 ARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNAAVILPGMTACIECTLELYPP 201
Query: 663 EKQAPMCTVHSFPHNIDHCLTWAR 686
+ PM T+ S P +HC+ + R
Sbjct: 202 QVNFPMATIASMPRLPEHCIEYVR 225
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 111 ILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRA 164
+L+ G GLG E+ KNL L+G + + + D +++ +L+ F+F D+G+ +A
Sbjct: 43 VLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKA 96
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 896 DDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 955
D D H+ I + RA Y I V + + RIIPA+A++ A+ + E++K
Sbjct: 242 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 301
Query: 956 VLDGGH 961
+ +
Sbjct: 302 IATSAY 307
>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|C Chain C, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|3DBH|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBL|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBR|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 531
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 86 IDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVEL 145
+ E + RQL ++G L ++++ + G EI KNL+L G+ S T+ D V
Sbjct: 10 LKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSG 69
Query: 146 WDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTKEKLSD--------FQA 197
D +NF +GKNRA A+++ LQELN+ V+ S + E + E L D F
Sbjct: 70 EDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFV--EESPENLLDNDPSFFCRFTV 127
Query: 198 VVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 234
VV T + ++ D N Q P+ ++ GL G
Sbjct: 128 VVATQLPESTSLRLADVLWNSQIPLLICRT--YGLVG 162
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 487 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE 546
+YD Q+ ++G Q+ LE A V ++ + A G E LKNL L G+ G TI D + +
Sbjct: 14 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 68
Query: 547 KSNLSRQFLFRDWNIGQAKS 566
+ F + +IG+ ++
Sbjct: 69 GEDAGNNFFLQRSSIGKNRA 88
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 354 DFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGS---EEDAQKIISLFT------N 404
D ++S D VL+L +A+D+F ++ GR+P + EED K+ S T
Sbjct: 407 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 466
Query: 405 INDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 456
++ + D+ V E C +GA A + +AA GG QEV+K + +F
Sbjct: 467 LSVMVKDDYVHE-----FCR--YGA-AEPHTIAAFLGGAAAQEVIKIITKQF 510
>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|C Chain C, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 537
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 86 IDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVEL 145
+ E + RQL ++G L ++++ + G EI KNL+L G+ S T+ D V
Sbjct: 11 LKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSG 70
Query: 146 WDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTKEKLSD--------FQA 197
D +NF +GKNRA A+++ LQELN+ V+ S + E + E L D F
Sbjct: 71 EDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFV--EESPENLLDNDPSFFCRFTV 128
Query: 198 VVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 234
VV T + ++ D N Q P+ ++ GL G
Sbjct: 129 VVATQLPESTSLRLADVLWNSQIPLLICRT--YGLVG 163
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 487 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE 546
+YD Q+ ++G Q+ LE A V ++ + A G E LKNL L G+ G TI D + +
Sbjct: 15 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 69
Query: 547 KSNLSRQFLFRDWNIGQAKS 566
+ F + +IG+ ++
Sbjct: 70 GEDAGNNFFLQRSSIGKNRA 89
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 354 DFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGS---EEDAQKIISLFT------N 404
D ++S D VL+L +A+D+F ++ GR+P + EED K+ S T
Sbjct: 413 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 472
Query: 405 INDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 456
++ + D+ V E C +GA A + +AA GG QEV+K + +F
Sbjct: 473 LSVMVKDDYVHE-----FCR--YGA-AEPHTIAAFLGGAAAQEVIKIITKQF 516
>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 536
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 86 IDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVEL 145
+ E + RQL ++G L ++++ + G EI KNL+L G+ S T+ D V
Sbjct: 10 LKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSG 69
Query: 146 WDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTKEKLSD--------FQA 197
D +NF +GKNRA A+++ LQELN+ V+ S + E + E L D F
Sbjct: 70 EDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFV--EESPENLLDNDPSFFCRFTV 127
Query: 198 VVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 234
VV T + ++ D N Q P+ ++ GL G
Sbjct: 128 VVATQLPESTSLRLADVLWNSQIPLLICRT--YGLVG 162
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 487 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE 546
+YD Q+ ++G Q+ LE A V ++ + A G E LKNL L G+ G TI D + +
Sbjct: 14 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 68
Query: 547 KSNLSRQFLFRDWNIGQAKS 566
+ F + +IG+ ++
Sbjct: 69 GEDAGNNFFLQRSSIGKNRA 88
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 354 DFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGS---EEDAQKIISLFT------N 404
D ++S D VL+L +A+D+F ++ GR+P + EED K+ S T
Sbjct: 412 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 471
Query: 405 INDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 456
++ + D+ V E C +GA A + +AA GG QEV+K + +F
Sbjct: 472 LSVMVKDDYVHE-----FCR--YGA-AEPHTIAAFLGGAAAQEVIKIITKQF 515
>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|C Chain C, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 534
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 86 IDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVEL 145
+ E + RQL ++G L ++++ + G EI KNL+L G+ S T+ D V
Sbjct: 8 LKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSG 67
Query: 146 WDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTKEKLSD--------FQA 197
D +NF +GKNRA A+++ LQELN+ V+ S + E + E L D F
Sbjct: 68 EDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFV--EESPENLLDNDPSFFCRFTV 125
Query: 198 VVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 234
VV T + ++ D N Q P+ ++ GL G
Sbjct: 126 VVATQLPESTSLRLADVLWNSQIPLLICRT--YGLVG 160
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 487 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE 546
+YD Q+ ++G Q+ LE A V ++ + A G E LKNL L G+ G TI D + +
Sbjct: 12 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 66
Query: 547 KSNLSRQFLFRDWNIGQAKS 566
+ F + +IG+ ++
Sbjct: 67 GEDAGNNFFLQRSSIGKNRA 86
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 354 DFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGS---EEDAQKIISLFT------N 404
D ++S D VL+L +A+D+F ++ GR+P + EED K+ S T
Sbjct: 410 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 469
Query: 405 INDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 456
++ + D+ V E C +GA A + +AA GG QEV+K + +F
Sbjct: 470 LSVMVKDDYVHE-----FCR--YGA-AEPHTIAAFLGGAAAQEVIKIITKQF 513
>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 529
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
Query: 86 IDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVEL 145
+ E + RQL ++G L ++++ + G EI KNL+L G+ S T+ D V
Sbjct: 8 LKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSG 67
Query: 146 WDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTKEKLSD--------FQA 197
D +NF +GKNRA A+++ LQELN+ V+ S + E + E L D F
Sbjct: 68 EDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFV--EESPENLLDNDPSFFCRFTV 125
Query: 198 VVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 234
VV T + ++ D N Q P+ ++ GL G
Sbjct: 126 VVATQLPESTSLRLADVLWNSQIPLLICRT--YGLVG 160
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 487 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE 546
+YD Q+ ++G Q+ LE A V ++ + A G E LKNL L G+ G TI D + +
Sbjct: 12 KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGI-----GSFTIIDGNQVS 66
Query: 547 KSNLSRQFLFRDWNIGQAKS 566
+ F + +IG+ ++
Sbjct: 67 GEDAGNNFFLQRSSIGKNRA 86
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 354 DFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGS---EEDAQKIISLFT------N 404
D ++S D VL+L +A+D+F ++ GR+P + EED K+ S T
Sbjct: 405 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYG 464
Query: 405 INDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKF 456
++ + D+ V E C +GA A + +AA GG QEV+K + +F
Sbjct: 465 LSVMVKDDYVHE-----FCR--YGA-AEPHTIAAFLGGAAAQEVIKIITKQF 508
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 63.2 bits (152), Expect = 9e-10, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Query: 81 GNPSDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLH 138
G+ +D D +SRQ+ + + ++L S +LI G+ GLG A L AGV ++ L
Sbjct: 1 GSMNDRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLA 60
Query: 139 DEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTKEKLSDFQAV 198
D+ V L +L +F+ +D+ + ++ S Q+L +LN + ++AL LT E L D AV
Sbjct: 61 DDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKD--AV 118
Query: 199 VFTDISLE 206
D+ L+
Sbjct: 119 ARADVVLD 126
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 487 RYDAQISVFGSKL--QKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 544
RY QI + L Q+KL +++V ++G G LG LA GV G L + DDD
Sbjct: 10 RYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGV-----GTLVLADDDD 64
Query: 545 IEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPE 592
+ SNL RQ LF +I + KS V +NP + ALQ R E
Sbjct: 65 VHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGE 112
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 84 SDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 141
+D D +SRQ+ + + ++L S +LI G+ GLG A L AGV ++ L D+
Sbjct: 2 NDRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD 61
Query: 142 VVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFT 201
V L +L +F+ +D+ + ++ S Q+L +LN + ++AL LT E L D AV
Sbjct: 62 DVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKD--AVARA 119
Query: 202 DISLE 206
D+ L+
Sbjct: 120 DVVLD 124
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 487 RYDAQISVFGSKL--QKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 544
RY QI + L Q+KL +++V ++G G LG LA GV G L + DDD
Sbjct: 8 RYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGV-----GTLVLADDDD 62
Query: 545 IEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHLNTEALQIRANPE 592
+ SNL RQ LF +I + KS V +NP + ALQ R E
Sbjct: 63 VHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGE 110
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 487 RYDAQISVFGSKL--QKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 544
RY+ QI + G Q+ L++++V +VG G LGC + LA GV G LT+ D D
Sbjct: 11 RYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGV-----GNLTLLDFDT 65
Query: 545 IEKSNLSRQFLFRDWNIGQAKSTVXXXXXXLINPHL 580
+ SNL RQ L D +GQ K INPH+
Sbjct: 66 VSLSNLQRQTLHSDATVGQPKVESARDALTRINPHI 101
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 89 DLHSRQLAVYGRETMRRLFA---------SNILISGMQGLGAEIAKNLILAGVKSVTLHD 139
+L +++ Y R+ + R F S +LI G+ GLG ++ L AGV ++TL D
Sbjct: 3 ELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLD 62
Query: 140 EGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTKEKLSDFQA 197
V L +L + S+ VG+ + ++ L +N +AI+ + L +L+ A
Sbjct: 63 FDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIA 120
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 499 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 558
+Q KL+ AKV ++G G +G LA G+ G++ + D+D IE +NL+RQ LF +
Sbjct: 112 VQDKLKNAKVVILGCGGIGNHVSVILATSGI-----GEIILIDNDQIENTNLTRQVLFSE 166
Query: 559 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETE 594
++G+ K+ V N ++ + + N T+
Sbjct: 167 DDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTD 202
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRA 164
+L + ++I G G+G ++ L +G+ + L D +E +L+ +FSEDDVGKN+
Sbjct: 115 KLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKT 174
Query: 165 LASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFTDISLEKA 208
++L + N+ +++S + L +D V DI + A
Sbjct: 175 EVIKRELLKRNSEISVSEIA--LNINDYTDLHKVPEADIWVVSA 216
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 499 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD 558
+Q KL+ AKV ++G G +G LA G+ G++ + D+D IE +NL+RQ LF +
Sbjct: 109 VQDKLKNAKVVILGCGGIGNHVSVILATSGI-----GEIILIDNDQIENTNLTRQVLFSE 163
Query: 559 WNIGQAKSTVXXXXXXLINPHLNTEALQIRANPETE 594
++G+ K+ V N ++ + + N T+
Sbjct: 164 DDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTD 199
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRA 164
+L + ++I G G+G ++ L +G+ + L D +E +L+ +FSEDDVGKN+
Sbjct: 112 KLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKT 171
Query: 165 LASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFTDISLEKA 208
++L + N+ +++S + L +D V DI + A
Sbjct: 172 EVIKRELLKRNSEISVSEIA--LNINDYTDLHKVPEADIWVVSA 213
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 562
++ KV ++G+G LGC + L GV K+T D+ + SN RQ L+ + G
Sbjct: 325 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 379
Query: 563 QAKSTVXXXXXXLINPHLNTEALQI 587
+ K+ + I P ++ +++
Sbjct: 380 KPKAELAAASLKRIFPLMDATGVKL 404
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNR---AL 165
+ +L+ G LG +++ LI GV+ +T D G V + +++ +D GK + A
Sbjct: 328 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA 387
Query: 166 ASIQKLQELNNAVAISALTTELTKEKLSDFQA 197
AS++++ L +A + L+ + KL + +A
Sbjct: 388 ASLKRIFPLMDATGVK-LSIPMIGHKLVNEEA 418
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 562
++ KV ++G+G LGC + L GV K+T D+ + SN RQ L+ + G
Sbjct: 325 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 379
Query: 563 QAKSTVXXXXXXLINPHLNTEALQI 587
+ K+ + I P ++ +++
Sbjct: 380 KPKAELAAASLKRIFPLMDATGVKL 404
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNR---AL 165
+ +L+ G LG +++ LI GV+ +T D G V + +++ +D GK + A
Sbjct: 328 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA 387
Query: 166 ASIQKLQELNNAVAISALTTELTKEKLSDFQA 197
AS++++ L +A + L+ + KL + +A
Sbjct: 388 ASLKRIFPLMDATGVK-LSIPMIGHKLVNEEA 418
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 562
++ KV ++G+G LGC + L GV K+T D+ + SN RQ L+ + G
Sbjct: 324 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 378
Query: 563 QAKSTVXXXXXXLINPHLNTEALQI 587
+ K+ + I P ++ +++
Sbjct: 379 KPKAELAAASLKRIFPLMDATGVKL 403
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNR---AL 165
+ +L+ G LG +++ LI GV+ +T D G V + +++ +D GK + A
Sbjct: 327 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA 386
Query: 166 ASIQKLQELNNAVAISALTTELTKEKLSDFQA 197
AS++++ L +A + L+ + KL + +A
Sbjct: 387 ASLKRIFPLMDATGVK-LSIPMIGHKLVNEEA 417
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 562
++ KV ++G+G LGC + L GV K+T D+ + SN RQ L+ + G
Sbjct: 32 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 86
Query: 563 QAKSTVXXXXXXLINPHLNTEALQI 587
+ K+ + I P ++ +++
Sbjct: 87 KPKAELAAASLKRIFPLMDATGVKL 111
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNR---AL 165
+ +L+ G LG +++ LI GV+ +T D G V + +++ +D GK + A
Sbjct: 35 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA 94
Query: 166 ASIQKLQELNNAVAISALTTELTKEKLSDFQA 197
AS++++ L +A + L+ + KL + +A
Sbjct: 95 ASLKRIFPLMDATGVK-LSIPMIGHKLVNEEA 125
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 562
++ KV ++G+G LGC + L GV K+T D+ + SN RQ L+ + G
Sbjct: 324 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDAG 378
Query: 563 QAKSTVXXXXXXLINPHLNTEALQI 587
+ K+ + I P ++ +++
Sbjct: 379 KPKAELAAASLKRIFPLMDATGVKL 403
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNR---AL 165
+ +L+ G LG +++ LI GV+ +T D G V + +++ +D GK + A
Sbjct: 327 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDAGKPKAELAA 386
Query: 166 ASIQKLQELNNAVAISALTTELTKEKLSDFQA 197
AS++++ L +A + L+ + KL + +A
Sbjct: 387 ASLKRIFPLMDATGVK-LSIPMIGHKLVNEEA 417
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 562
++ KV ++G+G LGC + L GV K+T D+ + SN RQ L+ + G
Sbjct: 36 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 90
Query: 563 QAKSTVXXXXXXLINPHLNTEALQI 587
+ K+ + I P ++ +++
Sbjct: 91 KPKAELAAASLKRIFPLMDATGVKL 115
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNR---AL 165
+ +L+ G LG +++ LI GV+ +T D G V + +++ +D GK + A
Sbjct: 39 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA 98
Query: 166 ASIQKLQELNNAVAISALTTELTKEKLSDFQA 197
AS++++ L +A + L+ + KL + +A
Sbjct: 99 ASLKRIFPLMDATGVK-LSIPMIGHKLVNEEA 129
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 36.6 bits (83), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 562
++ KV ++G+G LGC + L GV K+T D+ + SN RQ L+ + G
Sbjct: 32 IKNTKVLLLGAGTLGCYVSRALIAWGVR-----KITFVDNGTVSYSNPVRQALYNFEDCG 86
Query: 563 QAKSTVXXXXXXLINPHLNTEALQI 587
+ K+ + I P + +++
Sbjct: 87 KPKAELAAASLKRIFPLXDATGVKL 111
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNR---AL 165
+ +L+ G LG +++ LI GV+ +T D G V + +++ +D GK + A
Sbjct: 35 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA 94
Query: 166 ASIQKLQELNNAVAI 180
AS++++ L +A +
Sbjct: 95 ASLKRIFPLXDATGV 109
>pdb|2PPV|A Chain A, Crystal Structure Of A Protein Belonging To The Upf0052
(Se_0549) From Staphylococcus Epidermidis Atcc 12228 At
2.00 A Resolution
Length = 332
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
Query: 476 LDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVS 530
L+P D++P N +A LE+A + V+G G+L + NL + G+S
Sbjct: 160 LEPSDVEPXNEAIEA------------LEQADLIVLGPGSLYTSVISNLCVKGIS 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,037,159
Number of Sequences: 62578
Number of extensions: 1288424
Number of successful extensions: 2993
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2821
Number of HSP's gapped (non-prelim): 91
length of query: 1093
length of database: 14,973,337
effective HSP length: 109
effective length of query: 984
effective length of database: 8,152,335
effective search space: 8021897640
effective search space used: 8021897640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)