Query 001356
Match_columns 1093
No_of_seqs 539 out of 3878
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 22:41:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2012 Ubiquitin activating e 100.0 2E-264 4E-269 2256.0 74.1 1005 76-1092 5-1013(1013)
2 TIGR01408 Ube1 ubiquitin-activ 100.0 2E-233 4E-238 2161.0 96.2 1005 85-1093 1-1008(1008)
3 cd01490 Ube1_repeat2 Ubiquitin 100.0 9E-120 2E-124 1040.5 41.3 430 507-1046 1-435 (435)
4 KOG2013 SMT3/SUMO-activating c 100.0 5.1E-80 1.1E-84 684.0 24.6 471 498-1054 5-499 (603)
5 cd01489 Uba2_SUMO Ubiquitin ac 100.0 7.6E-75 1.7E-79 646.8 26.3 304 507-989 1-308 (312)
6 cd01491 Ube1_repeat1 Ubiquitin 100.0 1.1E-71 2.4E-76 614.4 26.5 285 90-474 1-285 (286)
7 cd01484 E1-2_like Ubiquitin ac 100.0 8.6E-63 1.9E-67 531.5 22.3 176 507-689 1-176 (234)
8 KOG2015 NEDD8-activating compl 100.0 1.6E-57 3.4E-62 484.0 22.0 345 496-1053 31-398 (422)
9 cd01488 Uba3_RUB Ubiquitin act 100.0 2.1E-57 4.5E-62 501.6 19.7 249 507-961 1-259 (291)
10 cd01493 APPBP1_RUB Ubiquitin a 100.0 7.2E-56 1.6E-60 514.1 20.3 366 89-470 1-420 (425)
11 KOG2014 SMT3/SUMO-activating c 100.0 1.4E-53 3.1E-58 453.4 22.7 314 83-471 6-322 (331)
12 KOG2016 NEDD8-activating compl 100.0 4E-53 8.6E-58 466.9 13.2 375 87-470 6-516 (523)
13 cd01492 Aos1_SUMO Ubiquitin ac 100.0 1.4E-37 3E-42 329.3 19.0 149 89-239 2-153 (197)
14 cd01485 E1-1_like Ubiquitin ac 100.0 9.2E-37 2E-41 323.4 18.9 149 90-240 1-157 (198)
15 PRK08223 hypothetical protein; 100.0 3.2E-36 6.9E-41 330.9 15.9 182 484-675 6-202 (287)
16 TIGR02356 adenyl_thiF thiazole 100.0 3.8E-36 8.2E-41 320.0 14.3 176 487-671 1-179 (202)
17 cd00757 ThiF_MoeB_HesA_family 100.0 3.5E-35 7.5E-40 318.6 16.7 164 487-659 1-166 (228)
18 PRK05690 molybdopterin biosynt 100.0 2.1E-35 4.5E-40 322.9 13.7 165 486-659 11-178 (245)
19 PRK07411 hypothetical protein; 100.0 4.5E-35 9.8E-40 340.3 14.0 176 486-670 17-196 (390)
20 PRK08328 hypothetical protein; 100.0 7.8E-35 1.7E-39 315.9 13.2 164 486-658 8-172 (231)
21 PRK05597 molybdopterin biosynt 100.0 1.7E-34 3.6E-39 331.9 14.3 177 486-671 7-187 (355)
22 TIGR02355 moeB molybdopterin s 100.0 4.1E-34 8.9E-39 311.4 15.1 166 485-659 2-170 (240)
23 cd01492 Aos1_SUMO Ubiquitin ac 100.0 4.9E-34 1.1E-38 302.2 14.2 152 486-647 2-153 (197)
24 cd01493 APPBP1_RUB Ubiquitin a 100.0 4.5E-32 9.7E-37 315.5 29.2 186 486-681 1-186 (425)
25 PRK07878 molybdopterin biosynt 100.0 2.2E-33 4.7E-38 327.0 15.4 164 486-658 21-190 (392)
26 cd01491 Ube1_repeat1 Ubiquitin 100.0 1.6E-33 3.4E-38 311.5 13.4 181 487-683 1-183 (286)
27 PRK05600 thiamine biosynthesis 100.0 1.5E-33 3.3E-38 324.6 13.6 164 486-658 20-188 (370)
28 cd01485 E1-1_like Ubiquitin ac 100.0 2.1E-33 4.6E-38 297.8 13.4 154 487-647 1-156 (198)
29 cd01489 Uba2_SUMO Ubiquitin ac 100.0 4.5E-33 9.7E-38 311.5 15.6 279 110-463 1-285 (312)
30 PRK12475 thiamine/molybdopteri 100.0 7.8E-33 1.7E-37 315.3 15.1 166 485-659 2-171 (338)
31 PRK07688 thiamine/molybdopteri 100.0 1.2E-32 2.6E-37 313.9 14.7 165 485-658 2-170 (339)
32 PRK08223 hypothetical protein; 100.0 2.6E-31 5.6E-36 292.2 17.4 159 87-247 6-172 (287)
33 PRK05690 molybdopterin biosynt 100.0 4.6E-31 9.9E-36 288.8 18.4 155 83-239 5-165 (245)
34 TIGR02356 adenyl_thiF thiazole 100.0 1.8E-31 3.8E-36 284.2 14.1 149 90-240 1-155 (202)
35 PRK07878 molybdopterin biosynt 100.0 5E-31 1.1E-35 307.2 19.0 165 83-249 15-192 (392)
36 PF09358 UBA_e1_C: Ubiquitin-a 100.0 3.6E-32 7.8E-37 265.5 6.4 123 966-1088 1-125 (125)
37 PRK08762 molybdopterin biosynt 100.0 4E-31 8.6E-36 307.1 15.1 177 486-671 114-298 (376)
38 COG0476 ThiF Dinucleotide-util 100.0 4E-31 8.8E-36 291.6 14.1 166 485-659 8-176 (254)
39 cd00757 ThiF_MoeB_HesA_family 100.0 1.1E-30 2.4E-35 283.4 16.6 150 90-241 1-156 (228)
40 PRK07411 hypothetical protein; 100.0 1.6E-30 3.5E-35 302.2 18.3 165 82-248 10-183 (390)
41 KOG2017 Molybdopterin synthase 100.0 6.6E-32 1.4E-36 291.6 5.9 175 475-662 38-215 (427)
42 PRK05597 molybdopterin biosynt 100.0 1.6E-30 3.5E-35 298.9 16.8 154 85-240 3-162 (355)
43 cd01488 Uba3_RUB Ubiquitin act 100.0 6.2E-30 1.4E-34 283.3 20.8 260 110-472 1-275 (291)
44 PRK08328 hypothetical protein; 100.0 4.3E-30 9.4E-35 278.9 17.8 155 85-241 4-163 (231)
45 PRK14851 hypothetical protein; 100.0 1.2E-30 2.6E-35 318.7 14.8 166 485-660 23-190 (679)
46 TIGR02355 moeB molybdopterin s 100.0 3.4E-30 7.3E-35 280.8 15.7 148 88-237 2-155 (240)
47 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 1.6E-30 3.4E-35 281.2 12.9 161 503-672 9-193 (244)
48 PRK14852 hypothetical protein; 100.0 2.7E-30 5.9E-35 318.2 15.1 166 484-659 311-478 (989)
49 PRK05600 thiamine biosynthesis 100.0 7E-30 1.5E-34 294.3 17.4 155 83-239 14-174 (370)
50 PRK15116 sulfur acceptor prote 100.0 1.2E-29 2.6E-34 278.3 13.8 164 485-657 10-175 (268)
51 KOG2013 SMT3/SUMO-activating c 100.0 9.1E-30 2E-34 284.2 11.2 362 101-468 5-418 (603)
52 cd01484 E1-2_like Ubiquitin ac 100.0 9.2E-28 2E-32 259.6 22.2 228 110-449 1-234 (234)
53 PRK07688 thiamine/molybdopteri 100.0 2.8E-28 6E-33 278.2 17.3 151 88-240 2-160 (339)
54 cd00755 YgdL_like Family of ac 100.0 1.5E-28 3.3E-33 265.4 14.0 155 495-657 1-156 (231)
55 PRK12475 thiamine/molybdopteri 100.0 2.8E-28 6E-33 278.1 16.4 151 88-240 2-160 (338)
56 PRK08644 thiamine biosynthesis 100.0 3E-28 6.4E-33 260.9 14.0 156 485-650 8-164 (212)
57 PRK07877 hypothetical protein; 100.0 2.2E-28 4.7E-33 299.3 14.5 181 461-658 66-251 (722)
58 TIGR01408 Ube1 ubiquitin-activ 100.0 4E-28 8.7E-33 306.8 16.8 164 87-252 398-574 (1008)
59 COG0476 ThiF Dinucleotide-util 99.9 1.4E-27 3.1E-32 263.4 16.9 158 83-242 3-166 (254)
60 PF00899 ThiF: ThiF family; I 99.9 5.7E-28 1.2E-32 241.2 12.2 135 504-647 1-135 (135)
61 PRK15116 sulfur acceptor prote 99.9 2.4E-27 5.2E-32 260.2 16.3 144 83-228 5-153 (268)
62 COG1179 Dinucleotide-utilizing 99.9 8.7E-28 1.9E-32 251.5 10.7 161 484-652 9-170 (263)
63 KOG2015 NEDD8-activating compl 99.9 1.6E-26 3.4E-31 247.6 19.6 272 98-471 30-318 (422)
64 PRK08762 molybdopterin biosynt 99.9 1E-26 2.2E-31 270.4 18.2 156 83-240 108-269 (376)
65 cd01490 Ube1_repeat2 Ubiquitin 99.9 2.4E-26 5.3E-31 266.2 21.3 131 110-242 1-144 (435)
66 PTZ00245 ubiquitin activating 99.9 3.4E-27 7.5E-32 249.2 12.7 122 84-208 2-123 (287)
67 KOG2017 Molybdopterin synthase 99.9 1.6E-27 3.5E-32 257.8 9.2 170 83-254 39-217 (427)
68 TIGR01381 E1_like_apg7 E1-like 99.9 7.7E-27 1.7E-31 276.6 15.2 156 485-647 319-490 (664)
69 PRK14852 hypothetical protein; 99.9 9E-27 2E-31 287.3 15.8 154 85-240 309-468 (989)
70 PRK14851 hypothetical protein; 99.9 1.7E-26 3.7E-31 282.4 16.7 156 83-240 18-179 (679)
71 cd01483 E1_enzyme_family Super 99.9 1.6E-26 3.5E-31 232.9 12.8 133 507-648 1-133 (143)
72 TIGR03603 cyclo_dehy_ocin bact 99.9 1.7E-26 3.6E-31 261.0 8.7 149 486-658 53-207 (318)
73 PF00899 ThiF: ThiF family; I 99.9 2.8E-25 6.1E-30 221.8 16.0 130 107-238 1-134 (135)
74 cd01486 Apg7 Apg7 is an E1-lik 99.9 1.1E-25 2.4E-30 247.3 13.8 133 507-647 1-150 (307)
75 cd01487 E1_ThiF_like E1_ThiF_l 99.9 2.4E-25 5.3E-30 231.5 13.4 142 507-658 1-145 (174)
76 PRK08644 thiamine biosynthesis 99.9 6.1E-25 1.3E-29 235.4 16.2 146 88-236 8-158 (212)
77 cd00755 YgdL_like Family of ac 99.9 4E-25 8.8E-30 238.8 14.7 132 98-231 1-137 (231)
78 cd01483 E1_enzyme_family Super 99.9 9.1E-25 2E-29 220.2 15.0 129 110-240 1-133 (143)
79 TIGR02354 thiF_fam2 thiamine b 99.9 1.9E-24 4.1E-29 229.5 14.6 156 490-657 6-167 (200)
80 COG1179 Dinucleotide-utilizing 99.9 3.1E-24 6.6E-29 225.0 12.8 143 85-229 7-154 (263)
81 PTZ00245 ubiquitin activating 99.9 2.8E-24 6.1E-29 227.3 11.3 114 486-615 7-120 (287)
82 PRK07877 hypothetical protein; 99.9 1.2E-23 2.5E-28 257.9 15.8 149 83-237 82-235 (722)
83 TIGR01381 E1_like_apg7 E1-like 99.9 2.7E-23 5.9E-28 246.6 14.3 172 67-241 297-492 (664)
84 PRK06153 hypothetical protein; 99.9 2.3E-23 5.1E-28 235.5 12.2 129 498-638 169-300 (393)
85 KOG2014 SMT3/SUMO-activating c 99.9 2.1E-23 4.6E-28 223.4 10.6 154 486-649 12-165 (331)
86 cd01486 Apg7 Apg7 is an E1-lik 99.9 3.3E-22 7.2E-27 219.9 14.9 129 110-241 1-152 (307)
87 KOG2016 NEDD8-activating compl 99.9 1.4E-22 3E-27 225.6 11.6 188 484-681 6-193 (523)
88 TIGR03603 cyclo_dehy_ocin bact 99.9 4.6E-22 1E-26 224.9 13.0 146 83-241 47-198 (318)
89 cd01487 E1_ThiF_like E1_ThiF_l 99.9 1.1E-21 2.4E-26 204.2 13.7 127 110-239 1-132 (174)
90 TIGR02354 thiF_fam2 thiamine b 99.9 2.2E-21 4.8E-26 206.0 14.9 138 96-237 9-151 (200)
91 PF02134 UBACT: Repeat in ubiq 99.8 1.2E-21 2.6E-26 170.8 5.4 66 892-959 1-66 (67)
92 KOG2018 Predicted dinucleotide 99.8 3.1E-21 6.8E-26 206.3 9.5 158 486-651 55-213 (430)
93 KOG2336 Molybdopterin biosynth 99.8 6.4E-21 1.4E-25 200.8 10.9 166 485-659 59-240 (422)
94 KOG2012 Ubiquitin activating e 99.8 1.1E-20 2.3E-25 223.0 6.3 152 88-241 410-574 (1013)
95 PRK06153 hypothetical protein; 99.8 3.1E-19 6.6E-24 202.3 14.3 126 100-229 168-299 (393)
96 KOG2018 Predicted dinucleotide 99.8 1.5E-19 3.2E-24 193.6 9.9 144 84-229 50-198 (430)
97 TIGR03736 PRTRC_ThiF PRTRC sys 99.8 2.4E-18 5.3E-23 186.6 13.1 129 106-238 9-151 (244)
98 KOG2336 Molybdopterin biosynth 99.7 1.4E-16 3E-21 168.3 10.5 158 83-243 54-232 (422)
99 PF10585 UBA_e1_thiolCys: Ubiq 99.5 3.3E-15 7.1E-20 119.3 1.4 45 650-694 1-45 (45)
100 TIGR03693 ocin_ThiF_like putat 99.4 2.2E-13 4.7E-18 161.3 9.0 146 486-657 104-260 (637)
101 KOG2337 Ubiquitin activating E 99.4 1.3E-12 2.8E-17 148.7 9.0 170 70-242 302-495 (669)
102 KOG2337 Ubiquitin activating E 99.3 6.5E-12 1.4E-16 143.1 8.6 133 499-636 334-482 (669)
103 TIGR03693 ocin_ThiF_like putat 99.1 4.4E-10 9.6E-15 133.6 13.3 137 83-235 98-245 (637)
104 COG4015 Predicted dinucleotide 98.3 1.8E-06 3.8E-11 86.0 8.9 121 108-235 18-146 (217)
105 PF02134 UBACT: Repeat in ubiq 98.2 5.8E-07 1.3E-11 78.8 2.7 50 791-845 1-50 (67)
106 PRK06718 precorrin-2 dehydroge 97.5 0.0013 2.8E-08 70.6 13.4 98 105-231 7-104 (202)
107 PF08825 E2_bind: E2 binding d 97.5 0.00012 2.6E-09 67.0 4.4 62 1002-1063 1-74 (84)
108 TIGR01470 cysG_Nterm siroheme 97.4 0.0018 3.9E-08 69.7 13.6 104 106-237 7-110 (205)
109 PF01488 Shikimate_DH: Shikima 97.3 0.00089 1.9E-08 67.1 8.6 78 104-204 8-85 (135)
110 TIGR03882 cyclo_dehyd_2 bacter 97.3 0.00027 5.8E-09 75.2 5.0 60 496-555 96-160 (193)
111 COG1748 LYS9 Saccharopine dehy 97.2 0.00091 2E-08 77.9 8.2 99 506-637 2-100 (389)
112 PRK12549 shikimate 5-dehydroge 97.1 0.002 4.3E-08 72.8 9.2 76 106-202 125-200 (284)
113 PRK06719 precorrin-2 dehydroge 97.0 0.0086 1.9E-07 61.7 12.9 86 105-219 10-95 (157)
114 PF13241 NAD_binding_7: Putati 97.0 0.0021 4.5E-08 61.4 7.8 89 105-228 4-92 (103)
115 COG1748 LYS9 Saccharopine dehy 97.0 0.0031 6.7E-08 73.5 10.2 98 109-233 2-104 (389)
116 PRK12549 shikimate 5-dehydroge 97.0 0.0019 4E-08 73.1 8.1 76 503-612 125-200 (284)
117 PRK05562 precorrin-2 dehydroge 96.9 0.013 2.7E-07 63.7 13.6 100 105-232 22-121 (223)
118 COG4015 Predicted dinucleotide 96.9 0.0019 4.1E-08 64.9 6.5 126 505-643 18-146 (217)
119 PF01488 Shikimate_DH: Shikima 96.8 0.0034 7.3E-08 63.0 7.4 79 501-615 8-86 (135)
120 PRK06718 precorrin-2 dehydroge 96.7 0.0059 1.3E-07 65.6 9.1 92 502-633 7-98 (202)
121 PF13241 NAD_binding_7: Putati 96.3 0.0054 1.2E-07 58.5 4.9 87 502-634 4-90 (103)
122 PRK06719 precorrin-2 dehydroge 96.2 0.018 4E-07 59.3 8.7 85 502-628 10-94 (157)
123 TIGR01470 cysG_Nterm siroheme 96.2 0.018 3.9E-07 62.0 8.8 95 503-636 7-101 (205)
124 PRK10637 cysG siroheme synthas 95.9 0.072 1.6E-06 64.4 13.4 105 105-237 9-113 (457)
125 PRK14027 quinate/shikimate deh 95.9 0.023 5.1E-07 64.2 8.3 78 106-202 125-202 (283)
126 COG1648 CysG Siroheme synthase 95.8 0.053 1.2E-06 58.5 10.2 105 105-237 9-113 (210)
127 PRK05562 precorrin-2 dehydroge 95.6 0.038 8.1E-07 60.1 8.2 97 502-637 22-118 (223)
128 PF03435 Saccharop_dh: Sacchar 95.3 0.025 5.4E-07 66.7 6.3 97 508-635 1-97 (386)
129 PF00056 Ldh_1_N: lactate/mala 95.3 0.06 1.3E-06 54.5 7.9 76 109-203 1-78 (141)
130 TIGR01809 Shik-DH-AROM shikima 95.0 0.053 1.1E-06 61.3 7.3 75 106-203 123-199 (282)
131 PRK12548 shikimate 5-dehydroge 95.0 0.087 1.9E-06 59.8 9.0 60 106-181 124-183 (289)
132 PRK14027 quinate/shikimate deh 94.9 0.058 1.3E-06 61.0 7.2 78 503-612 125-202 (283)
133 COG0373 HemA Glutamyl-tRNA red 94.9 0.048 1E-06 64.2 6.6 75 106-206 176-250 (414)
134 PRK12548 shikimate 5-dehydroge 94.7 0.071 1.5E-06 60.5 7.4 84 503-612 124-207 (289)
135 COG0169 AroE Shikimate 5-dehyd 94.7 0.086 1.9E-06 59.4 7.9 74 107-202 125-198 (283)
136 PRK00258 aroE shikimate 5-dehy 94.6 0.096 2.1E-06 59.1 8.2 75 105-203 120-194 (278)
137 PRK14106 murD UDP-N-acetylmura 94.5 0.12 2.7E-06 62.1 9.2 95 106-226 3-97 (450)
138 PRK13940 glutamyl-tRNA reducta 94.4 0.066 1.4E-06 63.7 6.6 75 105-204 178-252 (414)
139 PF03435 Saccharop_dh: Sacchar 94.4 0.13 2.9E-06 60.6 9.1 90 111-226 1-96 (386)
140 cd05291 HicDH_like L-2-hydroxy 94.4 0.11 2.4E-06 59.5 8.0 72 109-203 1-77 (306)
141 TIGR01809 Shik-DH-AROM shikima 94.3 0.072 1.6E-06 60.3 6.3 34 503-541 123-156 (282)
142 TIGR03882 cyclo_dehyd_2 bacter 94.3 0.16 3.5E-06 54.2 8.4 86 95-236 92-178 (193)
143 PRK12749 quinate/shikimate deh 94.3 0.17 3.7E-06 57.4 9.1 53 106-174 122-174 (288)
144 KOG4169 15-hydroxyprostaglandi 94.2 0.09 2E-06 56.6 6.1 83 503-611 3-90 (261)
145 PRK07819 3-hydroxybutyryl-CoA 94.1 0.12 2.7E-06 58.5 7.5 170 506-700 6-185 (286)
146 PF01113 DapB_N: Dihydrodipico 94.0 0.12 2.7E-06 50.9 6.6 99 507-641 2-102 (124)
147 PF05237 MoeZ_MoeB: MoeZ/MoeB 94.0 0.03 6.5E-07 51.5 1.9 41 430-470 23-64 (84)
148 PRK00258 aroE shikimate 5-dehy 94.0 0.1 2.2E-06 58.8 6.6 36 502-542 120-155 (278)
149 PRK04148 hypothetical protein; 93.9 0.55 1.2E-05 47.1 10.8 89 107-226 16-107 (134)
150 PRK14106 murD UDP-N-acetylmura 93.8 0.11 2.5E-06 62.4 7.0 36 503-544 3-38 (450)
151 PF00070 Pyr_redox: Pyridine n 93.8 0.064 1.4E-06 48.4 3.7 30 507-542 1-30 (80)
152 COG1648 CysG Siroheme synthase 93.8 0.079 1.7E-06 57.2 5.0 96 502-636 9-104 (210)
153 COG0569 TrkA K+ transport syst 93.7 0.23 5E-06 54.3 8.4 96 506-634 1-97 (225)
154 PF14732 UAE_UbL: Ubiquitin/SU 93.7 0.035 7.6E-07 51.4 1.7 49 1006-1054 7-57 (87)
155 COG0373 HemA Glutamyl-tRNA red 93.6 0.086 1.9E-06 62.1 5.1 75 502-615 175-249 (414)
156 PRK12749 quinate/shikimate deh 93.5 0.14 3E-06 58.1 6.7 83 503-612 122-204 (288)
157 PF03446 NAD_binding_2: NAD bi 93.4 0.16 3.4E-06 52.6 6.2 111 109-232 2-123 (163)
158 PRK00066 ldh L-lactate dehydro 93.4 0.27 5.9E-06 56.5 8.8 75 108-203 6-82 (315)
159 PF02826 2-Hacid_dh_C: D-isome 93.4 0.024 5.2E-07 59.6 0.2 39 501-545 32-70 (178)
160 cd05213 NAD_bind_Glutamyl_tRNA 93.2 0.35 7.6E-06 55.5 9.4 76 106-207 176-251 (311)
161 PLN00203 glutamyl-tRNA reducta 93.2 0.18 3.9E-06 61.7 7.4 76 106-204 264-339 (519)
162 KOG4169 15-hydroxyprostaglandi 93.0 0.23 4.9E-06 53.6 6.8 62 106-188 3-65 (261)
163 PRK13940 glutamyl-tRNA reducta 93.0 0.14 3.1E-06 60.9 5.9 35 502-541 178-212 (414)
164 PF02254 TrkA_N: TrkA-N domain 93.0 1.1 2.4E-05 43.1 11.1 82 111-220 1-88 (116)
165 cd01065 NAD_bind_Shikimate_DH 92.9 0.34 7.4E-06 49.1 7.8 35 106-140 17-51 (155)
166 cd00300 LDH_like L-lactate deh 92.8 0.71 1.5E-05 52.7 11.0 71 111-203 1-75 (300)
167 TIGR01035 hemA glutamyl-tRNA r 92.6 0.33 7.2E-06 58.0 8.3 36 105-140 177-212 (417)
168 PRK07066 3-hydroxybutyryl-CoA 92.6 0.35 7.6E-06 55.7 8.2 169 506-698 8-180 (321)
169 PRK05808 3-hydroxybutyryl-CoA 92.5 0.5 1.1E-05 53.3 9.3 32 506-543 4-35 (282)
170 cd05290 LDH_3 A subgroup of L- 92.5 0.44 9.6E-06 54.6 8.8 73 110-203 1-77 (307)
171 PRK09260 3-hydroxybutyryl-CoA 92.4 0.12 2.6E-06 58.5 4.1 33 506-544 2-34 (288)
172 PLN00203 glutamyl-tRNA reducta 92.4 2.3 4.9E-05 52.3 15.1 34 503-541 264-297 (519)
173 COG0169 AroE Shikimate 5-dehyd 92.3 0.28 6.1E-06 55.3 6.8 74 504-612 125-198 (283)
174 PRK10637 cysG siroheme synthas 92.3 0.33 7.1E-06 58.8 7.8 93 502-633 9-101 (457)
175 PF10585 UBA_e1_thiolCys: Ubiq 92.1 0.14 3.1E-06 41.4 3.0 23 735-757 23-45 (45)
176 cd05293 LDH_1 A subgroup of L- 92.1 0.43 9.3E-06 54.8 8.1 74 108-203 3-80 (312)
177 PLN02602 lactate dehydrogenase 92.1 0.41 8.8E-06 55.8 8.0 73 109-203 38-114 (350)
178 PRK05708 2-dehydropantoate 2-r 92.0 0.59 1.3E-05 53.5 9.1 33 108-141 2-34 (305)
179 COG0569 TrkA K+ transport syst 91.9 1.2 2.6E-05 48.7 11.0 105 109-241 1-113 (225)
180 COG1086 Predicted nucleoside-d 91.9 0.59 1.3E-05 56.7 9.0 87 498-611 243-332 (588)
181 cd05291 HicDH_like L-2-hydroxy 91.7 0.39 8.4E-06 55.0 7.2 33 506-542 1-33 (306)
182 COG0300 DltE Short-chain dehyd 91.7 0.51 1.1E-05 52.7 7.8 64 503-592 4-68 (265)
183 cd01080 NAD_bind_m-THF_DH_Cycl 91.7 0.23 5E-06 51.8 4.8 34 502-541 41-75 (168)
184 cd05311 NAD_bind_2_malic_enz N 91.6 0.19 4.2E-06 54.9 4.4 37 105-141 22-60 (226)
185 cd05311 NAD_bind_2_malic_enz N 91.5 0.15 3.4E-06 55.7 3.4 37 502-543 22-60 (226)
186 PRK06130 3-hydroxybutyryl-CoA 91.3 0.8 1.7E-05 52.4 9.3 32 506-543 5-36 (311)
187 PRK04148 hypothetical protein; 91.3 1 2.2E-05 45.2 8.7 91 504-633 16-106 (134)
188 PF01118 Semialdhyde_dh: Semia 91.2 0.85 1.8E-05 44.7 8.0 49 600-649 62-111 (121)
189 cd01078 NAD_bind_H4MPT_DH NADP 91.1 0.9 2E-05 48.2 8.8 78 105-203 25-106 (194)
190 PF03807 F420_oxidored: NADP o 91.0 1.3 2.8E-05 41.1 8.8 78 110-214 1-81 (96)
191 PRK05854 short chain dehydroge 91.0 0.6 1.3E-05 53.4 7.8 63 503-590 12-75 (313)
192 PF00056 Ldh_1_N: lactate/mala 90.7 0.68 1.5E-05 46.8 7.0 76 506-614 1-79 (141)
193 PRK00141 murD UDP-N-acetylmura 90.7 0.67 1.5E-05 56.3 8.2 95 101-226 8-103 (473)
194 PRK08293 3-hydroxybutyryl-CoA 90.6 1.6 3.6E-05 49.3 10.9 32 506-543 4-35 (287)
195 PTZ00082 L-lactate dehydrogena 90.6 0.61 1.3E-05 53.8 7.4 35 503-542 4-38 (321)
196 COG0111 SerA Phosphoglycerate 90.5 0.31 6.7E-06 56.2 4.9 90 502-611 139-232 (324)
197 PF03446 NAD_binding_2: NAD bi 90.5 0.8 1.7E-05 47.3 7.5 30 506-541 2-31 (163)
198 PTZ00117 malate dehydrogenase; 90.4 0.66 1.4E-05 53.5 7.4 35 107-141 4-38 (319)
199 PRK05476 S-adenosyl-L-homocyst 90.3 0.61 1.3E-05 55.6 7.2 36 503-544 210-245 (425)
200 PRK07063 short chain dehydroge 90.1 0.81 1.8E-05 50.4 7.7 65 502-591 4-69 (260)
201 PRK15469 ghrA bifunctional gly 90.0 0.56 1.2E-05 53.9 6.4 34 503-542 134-167 (312)
202 PRK01710 murD UDP-N-acetylmura 90.0 1 2.2E-05 54.6 9.0 96 104-226 10-106 (458)
203 PLN02206 UDP-glucuronate decar 89.9 1.3 2.8E-05 53.5 9.7 104 107-235 118-239 (442)
204 PRK00045 hemA glutamyl-tRNA re 89.9 0.57 1.2E-05 56.1 6.7 73 106-204 180-252 (423)
205 PRK06197 short chain dehydroge 89.9 0.95 2.1E-05 51.4 8.2 42 98-140 6-48 (306)
206 PRK00066 ldh L-lactate dehydro 89.9 0.69 1.5E-05 53.2 7.1 75 505-612 6-81 (315)
207 cd05290 LDH_3 A subgroup of L- 89.8 0.74 1.6E-05 52.8 7.2 31 507-541 1-31 (307)
208 PRK09599 6-phosphogluconate de 89.7 0.94 2E-05 51.7 7.9 112 110-232 2-123 (301)
209 PRK06130 3-hydroxybutyryl-CoA 89.7 2.1 4.5E-05 49.0 10.7 32 109-141 5-36 (311)
210 PTZ00082 L-lactate dehydrogena 89.6 1.2 2.6E-05 51.4 8.7 35 106-140 4-38 (321)
211 PLN02819 lysine-ketoglutarate 89.6 0.94 2E-05 59.5 8.6 104 504-636 568-679 (1042)
212 PRK08410 2-hydroxyacid dehydro 89.6 0.7 1.5E-05 53.1 6.8 35 502-542 142-176 (311)
213 PRK06197 short chain dehydroge 89.6 0.69 1.5E-05 52.5 6.7 36 501-542 12-48 (306)
214 TIGR02992 ectoine_eutC ectoine 89.5 1.2 2.6E-05 51.5 8.7 75 108-204 129-204 (326)
215 cd01075 NAD_bind_Leu_Phe_Val_D 89.5 1.6 3.5E-05 46.8 9.1 36 105-141 25-60 (200)
216 PRK13243 glyoxylate reductase; 89.5 0.54 1.2E-05 54.5 5.8 35 502-542 147-181 (333)
217 cd01080 NAD_bind_m-THF_DH_Cycl 89.5 0.7 1.5E-05 48.3 6.0 35 105-140 41-76 (168)
218 cd01078 NAD_bind_H4MPT_DH NADP 89.5 0.9 1.9E-05 48.2 7.1 83 502-615 25-108 (194)
219 cd00401 AdoHcyase S-adenosyl-L 89.4 1.2 2.7E-05 52.9 8.8 35 503-543 200-234 (413)
220 PRK05808 3-hydroxybutyryl-CoA 89.4 2.1 4.5E-05 48.3 10.3 33 109-142 4-36 (282)
221 PRK01438 murD UDP-N-acetylmura 89.3 1.3 2.8E-05 53.9 9.2 94 106-226 14-107 (480)
222 PRK07062 short chain dehydroge 89.2 1.3 2.9E-05 48.8 8.5 64 503-591 6-70 (265)
223 PF01118 Semialdhyde_dh: Semia 89.2 2.1 4.6E-05 41.9 9.0 89 110-226 1-95 (121)
224 PRK06487 glycerate dehydrogena 89.0 0.68 1.5E-05 53.3 6.1 35 502-542 145-179 (317)
225 TIGR00507 aroE shikimate 5-deh 89.0 1.3 2.7E-05 49.8 8.2 71 107-202 116-186 (270)
226 TIGR00872 gnd_rel 6-phosphoglu 89.0 0.63 1.4E-05 53.1 5.8 32 110-142 2-33 (298)
227 TIGR00507 aroE shikimate 5-deh 88.9 1.1 2.3E-05 50.4 7.5 32 504-541 116-147 (270)
228 PRK15438 erythronate-4-phospha 88.9 1 2.2E-05 53.0 7.5 35 502-542 113-147 (378)
229 PRK09496 trkA potassium transp 88.8 1.9 4.1E-05 51.9 10.0 94 106-227 229-328 (453)
230 PLN02166 dTDP-glucose 4,6-dehy 88.8 1.6 3.6E-05 52.5 9.4 103 108-235 120-240 (436)
231 PRK07819 3-hydroxybutyryl-CoA 88.7 1.6 3.6E-05 49.4 8.9 33 109-142 6-38 (286)
232 PRK07574 formate dehydrogenase 88.6 0.52 1.1E-05 55.6 5.0 35 502-542 189-223 (385)
233 PF13460 NAD_binding_10: NADH( 88.6 3.4 7.4E-05 42.8 10.6 93 111-234 1-103 (183)
234 PF01113 DapB_N: Dihydrodipico 88.6 1.4 2.9E-05 43.6 7.1 94 110-228 2-98 (124)
235 TIGR01759 MalateDH-SF1 malate 88.5 0.93 2E-05 52.3 6.8 76 109-203 4-88 (323)
236 PRK14192 bifunctional 5,10-met 88.5 0.64 1.4E-05 52.6 5.4 34 502-541 156-190 (283)
237 PRK07634 pyrroline-5-carboxyla 88.4 2.4 5.1E-05 46.6 9.8 81 107-214 3-86 (245)
238 PRK07831 short chain dehydroge 88.4 1.6 3.4E-05 48.3 8.3 33 503-541 15-49 (262)
239 PRK07066 3-hydroxybutyryl-CoA 88.3 2.6 5.5E-05 48.7 10.1 109 109-232 8-122 (321)
240 PRK06141 ornithine cyclodeamin 88.2 1.4 3.1E-05 50.6 8.1 77 105-204 122-199 (314)
241 COG1086 Predicted nucleoside-d 88.2 2 4.2E-05 52.4 9.3 93 88-199 229-330 (588)
242 PRK00048 dihydrodipicolinate r 88.1 1.3 2.9E-05 49.4 7.5 91 506-640 2-94 (257)
243 PRK06932 glycerate dehydrogena 88.1 0.87 1.9E-05 52.4 6.2 34 502-541 144-177 (314)
244 cd05293 LDH_1 A subgroup of L- 88.0 1.7 3.6E-05 50.0 8.5 33 505-541 3-35 (312)
245 PRK13403 ketol-acid reductoiso 88.0 3.4 7.3E-05 47.5 10.6 38 102-140 10-47 (335)
246 PLN02819 lysine-ketoglutarate 88.0 1.6 3.4E-05 57.5 9.0 95 107-227 568-678 (1042)
247 PRK03562 glutathione-regulated 87.9 1.8 3.8E-05 54.6 9.3 86 108-221 400-491 (621)
248 PF02737 3HCDH_N: 3-hydroxyacy 87.9 1 2.2E-05 47.5 6.2 32 110-142 1-32 (180)
249 cd05191 NAD_bind_amino_acid_DH 87.8 0.87 1.9E-05 41.8 4.9 38 105-142 20-57 (86)
250 PRK14619 NAD(P)H-dependent gly 87.7 1.3 2.8E-05 50.8 7.3 33 505-543 4-36 (308)
251 PF02254 TrkA_N: TrkA-N domain 87.6 0.86 1.9E-05 43.8 5.0 85 508-627 1-85 (116)
252 COG0039 Mdh Malate/lactate deh 87.6 0.9 2E-05 51.9 5.8 75 109-203 1-78 (313)
253 PF00070 Pyr_redox: Pyridine n 87.5 0.96 2.1E-05 40.7 4.9 54 110-175 1-54 (80)
254 PTZ00325 malate dehydrogenase; 87.5 1.1 2.4E-05 51.7 6.5 77 106-203 6-85 (321)
255 PF03807 F420_oxidored: NADP o 87.5 0.75 1.6E-05 42.7 4.3 90 507-634 1-92 (96)
256 PRK00257 erythronate-4-phospha 87.4 0.76 1.6E-05 54.2 5.3 35 502-542 113-147 (381)
257 PRK07530 3-hydroxybutyryl-CoA 87.4 5.8 0.00013 45.0 12.4 33 108-141 4-36 (292)
258 PRK06436 glycerate dehydrogena 87.4 0.69 1.5E-05 52.9 4.8 36 502-543 119-154 (303)
259 PLN03139 formate dehydrogenase 87.4 0.59 1.3E-05 55.1 4.4 35 502-542 196-230 (386)
260 PRK07502 cyclohexadienyl dehyd 87.4 2.2 4.7E-05 48.8 8.9 33 108-140 6-39 (307)
261 cd05191 NAD_bind_amino_acid_DH 87.3 0.62 1.3E-05 42.8 3.6 37 502-543 20-56 (86)
262 TIGR01915 npdG NADPH-dependent 87.3 4.6 0.0001 43.8 11.0 84 110-214 2-88 (219)
263 PRK12490 6-phosphogluconate de 87.2 1.2 2.7E-05 50.7 6.8 32 110-142 2-33 (299)
264 PRK09242 tropinone reductase; 87.0 1.9 4.2E-05 47.3 8.0 65 502-591 6-71 (257)
265 PLN02427 UDP-apiose/xylose syn 86.9 3 6.6E-05 49.0 10.1 36 105-140 11-47 (386)
266 PRK05476 S-adenosyl-L-homocyst 86.9 3.4 7.3E-05 49.5 10.3 37 105-142 209-245 (425)
267 PRK07340 ornithine cyclodeamin 86.8 1.9 4E-05 49.5 7.9 75 106-204 123-198 (304)
268 TIGR00465 ilvC ketol-acid redu 86.8 3 6.5E-05 48.0 9.6 33 106-139 1-33 (314)
269 PRK03659 glutathione-regulated 86.8 2.8 6.1E-05 52.6 10.2 86 108-221 400-491 (601)
270 PRK08618 ornithine cyclodeamin 86.8 2 4.4E-05 49.6 8.2 141 431-615 49-203 (325)
271 PRK11880 pyrroline-5-carboxyla 86.7 1 2.3E-05 50.1 5.8 33 506-541 3-35 (267)
272 PLN02780 ketoreductase/ oxidor 86.7 2.2 4.8E-05 49.1 8.5 61 505-590 53-114 (320)
273 PLN02928 oxidoreductase family 86.6 0.94 2E-05 52.9 5.4 35 502-542 156-190 (347)
274 cd01075 NAD_bind_Leu_Phe_Val_D 86.6 0.61 1.3E-05 50.1 3.6 36 502-543 25-60 (200)
275 PRK06249 2-dehydropantoate 2-r 86.6 1.1 2.4E-05 51.4 6.0 34 108-142 5-38 (313)
276 PLN02545 3-hydroxybutyryl-CoA 86.6 3.3 7.1E-05 47.0 9.8 33 109-142 5-37 (295)
277 PRK05479 ketol-acid reductoiso 86.6 2.2 4.7E-05 49.4 8.2 35 501-541 13-47 (330)
278 PRK08251 short chain dehydroge 86.5 2.3 5E-05 46.3 8.2 62 505-591 2-64 (248)
279 PRK11908 NAD-dependent epimera 86.5 2.8 6E-05 48.5 9.3 31 506-542 2-34 (347)
280 PTZ00142 6-phosphogluconate de 86.4 1.1 2.5E-05 54.2 6.2 116 109-231 2-129 (470)
281 cd05296 GH4_P_beta_glucosidase 86.3 1.8 3.8E-05 51.9 7.6 109 110-238 2-117 (419)
282 TIGR00518 alaDH alanine dehydr 86.3 1.5 3.3E-05 51.6 7.0 35 106-141 165-199 (370)
283 cd01065 NAD_bind_Shikimate_DH 86.3 0.67 1.4E-05 46.9 3.6 35 503-542 17-51 (155)
284 PLN03209 translocon at the inn 86.3 2.6 5.6E-05 52.1 9.1 83 503-613 78-168 (576)
285 PRK02705 murD UDP-N-acetylmura 86.3 2.8 6E-05 50.7 9.5 125 109-262 1-130 (459)
286 PRK08618 ornithine cyclodeamin 86.2 2.4 5.2E-05 49.0 8.5 78 107-206 126-204 (325)
287 PRK09242 tropinone reductase; 86.2 3.5 7.6E-05 45.2 9.5 63 105-187 6-69 (257)
288 PRK10537 voltage-gated potassi 86.2 2.1 4.7E-05 50.7 8.2 88 103-220 235-328 (393)
289 PRK06522 2-dehydropantoate 2-r 86.1 3.2 6.9E-05 47.0 9.4 30 110-140 2-31 (304)
290 PRK07680 late competence prote 86.1 4.6 9.9E-05 45.3 10.5 78 110-214 2-82 (273)
291 PRK12826 3-ketoacyl-(acyl-carr 86.1 2.2 4.8E-05 46.3 7.8 35 503-543 4-39 (251)
292 PRK06035 3-hydroxyacyl-CoA deh 85.9 3.5 7.6E-05 46.7 9.5 33 109-142 4-36 (291)
293 TIGR00873 gnd 6-phosphoglucona 85.9 1.4 2.9E-05 53.6 6.5 114 110-231 1-126 (467)
294 PLN02602 lactate dehydrogenase 85.9 1.9 4.1E-05 50.4 7.5 33 506-542 38-70 (350)
295 PRK06223 malate dehydrogenase; 85.8 4.1 8.8E-05 46.6 10.1 32 109-140 3-34 (307)
296 PF02826 2-Hacid_dh_C: D-isome 85.8 0.67 1.5E-05 48.7 3.4 42 101-143 29-70 (178)
297 PRK11880 pyrroline-5-carboxyla 85.8 3.9 8.4E-05 45.6 9.7 78 109-214 3-82 (267)
298 PRK07679 pyrroline-5-carboxyla 85.7 4.6 0.0001 45.5 10.3 82 107-215 2-86 (279)
299 COG0771 MurD UDP-N-acetylmuram 85.7 1.8 4E-05 51.9 7.3 92 106-225 5-97 (448)
300 PRK04308 murD UDP-N-acetylmura 85.5 2.8 6.1E-05 50.5 8.9 93 106-226 3-96 (445)
301 PRK05854 short chain dehydroge 85.4 3.5 7.7E-05 47.1 9.3 59 105-183 11-70 (313)
302 PLN00016 RNA-binding protein; 85.4 3.9 8.4E-05 48.1 9.9 114 103-235 47-171 (378)
303 PF01210 NAD_Gly3P_dh_N: NAD-d 85.4 4.2 9.1E-05 41.7 9.0 82 110-216 1-91 (157)
304 cd01338 MDH_choloroplast_like 85.4 1.2 2.5E-05 51.6 5.3 74 109-203 3-87 (322)
305 cd05292 LDH_2 A subgroup of L- 85.3 2.6 5.6E-05 48.4 8.1 31 110-140 2-33 (308)
306 PF01210 NAD_Gly3P_dh_N: NAD-d 85.3 0.88 1.9E-05 46.8 3.9 102 507-640 1-106 (157)
307 PRK08293 3-hydroxybutyryl-CoA 85.3 6.8 0.00015 44.3 11.4 32 109-141 4-35 (287)
308 PRK14619 NAD(P)H-dependent gly 85.3 4.1 8.9E-05 46.6 9.8 33 108-141 4-36 (308)
309 PRK05708 2-dehydropantoate 2-r 85.3 0.7 1.5E-05 52.9 3.5 33 505-543 2-34 (305)
310 PF10727 Rossmann-like: Rossma 85.2 2.2 4.8E-05 42.4 6.5 81 107-215 9-89 (127)
311 TIGR01757 Malate-DH_plant mala 85.2 2.3 4.9E-05 50.3 7.7 76 109-203 45-129 (387)
312 cd00401 AdoHcyase S-adenosyl-L 85.2 4.1 8.8E-05 48.6 9.8 62 76-141 167-234 (413)
313 cd00300 LDH_like L-lactate deh 85.2 2.2 4.7E-05 48.8 7.4 72 508-613 1-75 (300)
314 PLN03209 translocon at the inn 85.2 5.2 0.00011 49.5 10.9 104 107-231 79-210 (576)
315 PRK00094 gpsA NAD(P)H-dependen 85.2 5.1 0.00011 45.8 10.5 31 110-141 3-33 (325)
316 PRK07531 bifunctional 3-hydrox 85.1 4 8.6E-05 50.1 10.1 32 506-543 5-36 (495)
317 PLN02350 phosphogluconate dehy 85.1 5.5 0.00012 48.7 11.1 117 109-232 7-136 (493)
318 KOG0069 Glyoxylate/hydroxypyru 85.1 0.55 1.2E-05 54.0 2.4 94 501-638 158-255 (336)
319 PF10727 Rossmann-like: Rossma 85.0 2.7 5.9E-05 41.8 7.1 83 504-627 9-91 (127)
320 PRK09599 6-phosphogluconate de 85.0 1.2 2.7E-05 50.7 5.3 31 507-543 2-32 (301)
321 PTZ00431 pyrroline carboxylate 84.9 4.2 9.1E-05 45.4 9.4 74 107-215 2-78 (260)
322 cd01339 LDH-like_MDH L-lactate 84.9 6.6 0.00014 44.8 11.2 31 111-141 1-31 (300)
323 PRK07417 arogenate dehydrogena 84.9 3.6 7.8E-05 46.4 8.9 30 110-140 2-31 (279)
324 PRK09496 trkA potassium transp 84.8 2.4 5.3E-05 50.9 8.0 93 504-629 230-322 (453)
325 PRK12921 2-dehydropantoate 2-r 84.8 2.8 6.1E-05 47.5 8.1 30 110-140 2-31 (305)
326 TIGR00872 gnd_rel 6-phosphoglu 84.8 0.91 2E-05 51.7 4.1 31 507-543 2-32 (298)
327 PLN02206 UDP-glucuronate decar 84.7 2.6 5.6E-05 50.9 8.1 33 504-542 118-151 (442)
328 PRK07063 short chain dehydroge 84.6 3.5 7.6E-05 45.3 8.6 60 105-184 4-64 (260)
329 PRK05867 short chain dehydroge 84.5 1.8 4E-05 47.4 6.3 33 503-541 7-40 (253)
330 PF00106 adh_short: short chai 84.5 4.7 0.0001 40.9 8.8 60 109-187 1-61 (167)
331 PLN02240 UDP-glucose 4-epimera 84.5 6.3 0.00014 45.4 11.0 34 106-140 3-37 (352)
332 PRK06223 malate dehydrogenase; 84.5 2.5 5.5E-05 48.2 7.6 32 506-542 3-34 (307)
333 PRK07576 short chain dehydroge 84.4 1.9 4E-05 47.9 6.3 36 502-543 6-42 (264)
334 PRK08291 ectoine utilization p 84.3 3.8 8.2E-05 47.5 9.0 75 108-204 132-207 (330)
335 PRK07478 short chain dehydroge 84.3 2 4.3E-05 47.1 6.5 34 503-542 4-38 (254)
336 PRK11790 D-3-phosphoglycerate 84.3 1.2 2.6E-05 53.2 4.9 35 502-542 148-182 (409)
337 PF02558 ApbA: Ketopantoate re 84.2 3 6.5E-05 42.0 7.2 83 111-214 1-87 (151)
338 PF02737 3HCDH_N: 3-hydroxyacy 84.2 0.94 2E-05 47.8 3.6 34 507-546 1-34 (180)
339 PRK02006 murD UDP-N-acetylmura 84.2 3.2 6.9E-05 50.9 8.7 95 106-226 5-102 (498)
340 PLN02306 hydroxypyruvate reduc 84.1 1.2 2.6E-05 52.7 4.8 35 502-542 162-197 (386)
341 PRK04663 murD UDP-N-acetylmura 84.1 2.2 4.8E-05 51.3 7.2 125 104-262 2-129 (438)
342 PRK09186 flagellin modificatio 84.0 2.6 5.6E-05 46.1 7.2 33 503-541 2-35 (256)
343 PF02719 Polysacc_synt_2: Poly 84.0 2.1 4.6E-05 48.5 6.5 32 111-142 1-33 (293)
344 PRK07062 short chain dehydroge 84.0 5 0.00011 44.3 9.4 60 106-185 6-66 (265)
345 cd00650 LDH_MDH_like NAD-depen 83.9 3 6.4E-05 46.6 7.6 71 111-202 1-78 (263)
346 PRK05479 ketol-acid reductoiso 83.9 2.7 5.8E-05 48.6 7.3 36 103-139 12-47 (330)
347 PRK06523 short chain dehydroge 83.9 2.3 4.9E-05 46.8 6.6 37 502-544 6-43 (260)
348 PRK07523 gluconate 5-dehydroge 83.8 2.8 6.2E-05 45.9 7.4 35 502-542 7-42 (255)
349 PRK11908 NAD-dependent epimera 83.7 7.5 0.00016 44.9 11.2 32 109-140 2-34 (347)
350 PF00106 adh_short: short chai 83.6 1.6 3.5E-05 44.3 5.0 83 506-612 1-88 (167)
351 KOG0024 Sorbitol dehydrogenase 83.6 2.8 6.1E-05 47.7 7.1 35 504-543 169-203 (354)
352 PRK03562 glutathione-regulated 83.6 1.5 3.3E-05 55.2 5.7 89 505-628 400-488 (621)
353 PTZ00431 pyrroline carboxylate 83.6 2.5 5.4E-05 47.2 6.9 37 504-542 2-38 (260)
354 PRK09260 3-hydroxybutyryl-CoA 83.6 7.4 0.00016 44.0 10.8 33 109-142 2-34 (288)
355 PRK07531 bifunctional 3-hydrox 83.5 6.5 0.00014 48.2 11.0 33 109-142 5-37 (495)
356 PRK08217 fabG 3-ketoacyl-(acyl 83.5 2.3 5.1E-05 46.1 6.5 34 503-542 3-37 (253)
357 TIGR01771 L-LDH-NAD L-lactate 83.4 2.1 4.6E-05 48.9 6.3 68 113-203 1-73 (299)
358 TIGR01763 MalateDH_bact malate 83.4 8.5 0.00019 44.1 11.2 32 109-140 2-33 (305)
359 PRK06928 pyrroline-5-carboxyla 83.4 6.6 0.00014 44.3 10.2 79 110-214 3-84 (277)
360 PRK02472 murD UDP-N-acetylmura 83.3 3.3 7.2E-05 49.8 8.3 93 106-226 3-97 (447)
361 PRK14175 bifunctional 5,10-met 83.3 1.9 4.2E-05 48.7 5.8 34 502-541 155-189 (286)
362 PRK05335 tRNA (uracil-5-)-meth 83.2 0.97 2.1E-05 53.9 3.5 34 505-544 2-35 (436)
363 COG1893 ApbA Ketopantoate redu 83.1 3.9 8.4E-05 46.9 8.3 84 109-219 1-92 (307)
364 PRK06476 pyrroline-5-carboxyla 83.1 5.3 0.00012 44.4 9.2 23 110-132 2-24 (258)
365 PRK12384 sorbitol-6-phosphate 83.1 4 8.8E-05 44.7 8.2 32 505-542 2-34 (259)
366 cd01337 MDH_glyoxysomal_mitoch 82.9 2.6 5.6E-05 48.4 6.7 73 110-203 2-77 (310)
367 PRK15409 bifunctional glyoxyla 82.9 1.9 4.1E-05 49.8 5.7 34 502-541 142-176 (323)
368 PRK05442 malate dehydrogenase; 82.8 1.8 3.9E-05 50.1 5.4 74 109-203 5-89 (326)
369 PRK13301 putative L-aspartate 82.7 3 6.4E-05 46.6 6.8 116 109-234 3-129 (267)
370 PTZ00117 malate dehydrogenase; 82.6 1.1 2.4E-05 51.6 3.6 35 504-543 4-38 (319)
371 PRK13403 ketol-acid reductoiso 82.5 1.1 2.4E-05 51.3 3.5 36 500-541 11-46 (335)
372 PRK07831 short chain dehydroge 82.5 6 0.00013 43.6 9.3 34 106-140 15-50 (262)
373 TIGR01035 hemA glutamyl-tRNA r 82.4 1.1 2.3E-05 53.7 3.5 36 502-542 177-212 (417)
374 PRK07576 short chain dehydroge 82.3 4.4 9.5E-05 44.9 8.2 38 102-140 3-41 (264)
375 PRK07634 pyrroline-5-carboxyla 82.3 3.7 8E-05 45.1 7.5 26 504-529 3-28 (245)
376 PRK14618 NAD(P)H-dependent gly 82.3 5.8 0.00013 45.7 9.5 92 110-229 6-105 (328)
377 PRK03659 glutathione-regulated 82.3 3.3 7.1E-05 52.0 7.9 89 505-628 400-488 (601)
378 PRK07792 fabG 3-ketoacyl-(acyl 82.2 2.4 5.2E-05 48.3 6.2 35 502-542 9-44 (306)
379 PRK06138 short chain dehydroge 82.2 4 8.8E-05 44.4 7.8 34 503-542 3-37 (252)
380 PRK03803 murD UDP-N-acetylmura 82.2 3.9 8.5E-05 49.3 8.3 123 108-262 6-129 (448)
381 PRK04690 murD UDP-N-acetylmura 82.1 3.6 7.8E-05 50.0 8.0 92 106-226 6-98 (468)
382 PRK08339 short chain dehydroge 82.1 4.4 9.5E-05 45.0 8.1 34 503-542 6-40 (263)
383 PF04321 RmlD_sub_bind: RmlD s 82.0 4.1 8.9E-05 46.1 7.9 97 110-233 2-105 (286)
384 PRK13304 L-aspartate dehydroge 82.0 3.7 8E-05 46.1 7.4 86 506-633 2-89 (265)
385 cd05197 GH4_glycoside_hydrolas 81.9 3.7 8.1E-05 49.2 7.8 106 110-237 2-115 (425)
386 PRK12829 short chain dehydroge 81.9 3.6 7.8E-05 45.1 7.3 37 500-542 6-43 (264)
387 cd05211 NAD_bind_Glu_Leu_Phe_V 81.9 1.8 3.9E-05 47.1 4.7 38 105-142 20-57 (217)
388 PLN02253 xanthoxin dehydrogena 81.9 3.5 7.6E-05 45.9 7.3 35 502-542 15-50 (280)
389 PLN00106 malate dehydrogenase 81.9 5.1 0.00011 46.3 8.6 74 107-201 17-93 (323)
390 PRK15181 Vi polysaccharide bio 81.7 3 6.4E-05 48.5 6.8 35 105-140 12-47 (348)
391 PRK06522 2-dehydropantoate 2-r 81.6 1.3 2.9E-05 50.1 3.8 32 506-543 1-32 (304)
392 PRK03369 murD UDP-N-acetylmura 81.6 4.1 9E-05 49.8 8.3 88 107-226 11-99 (488)
393 cd01076 NAD_bind_1_Glu_DH NAD( 81.5 5.8 0.00013 43.5 8.6 38 104-141 27-64 (227)
394 PLN03129 NADP-dependent malic 81.5 0.6 1.3E-05 57.1 1.0 109 501-636 317-435 (581)
395 PRK14982 acyl-ACP reductase; P 81.5 1.2 2.5E-05 51.7 3.3 36 502-542 152-189 (340)
396 PRK07231 fabG 3-ketoacyl-(acyl 81.5 5.6 0.00012 43.1 8.5 35 106-141 3-38 (251)
397 PF02558 ApbA: Ketopantoate re 81.4 1.4 3E-05 44.5 3.5 29 508-542 1-29 (151)
398 cd05211 NAD_bind_Glu_Leu_Phe_V 81.3 1.4 3E-05 48.0 3.6 37 502-543 20-56 (217)
399 PRK08229 2-dehydropantoate 2-r 81.3 9.9 0.00021 43.9 10.9 95 109-232 3-110 (341)
400 TIGR02992 ectoine_eutC ectoine 81.3 4.3 9.3E-05 47.0 7.8 143 430-614 49-204 (326)
401 PRK13301 putative L-aspartate 81.1 1.4 3E-05 49.2 3.5 23 505-527 2-24 (267)
402 PLN02427 UDP-apiose/xylose syn 81.1 3.1 6.7E-05 49.0 6.7 36 502-542 11-47 (386)
403 TIGR03589 PseB UDP-N-acetylglu 81.1 11 0.00023 43.5 11.0 36 106-141 2-39 (324)
404 PRK06249 2-dehydropantoate 2-r 81.0 1.3 2.9E-05 50.7 3.6 34 505-544 5-38 (313)
405 PRK06125 short chain dehydroge 80.9 4.8 0.0001 44.3 7.8 34 503-542 5-39 (259)
406 PRK12491 pyrroline-5-carboxyla 80.9 11 0.00024 42.5 10.7 80 108-215 2-84 (272)
407 PRK14620 NAD(P)H-dependent gly 80.9 11 0.00024 43.4 11.1 31 110-141 2-32 (326)
408 PRK08605 D-lactate dehydrogena 80.9 1.8 3.9E-05 50.2 4.6 35 502-542 143-178 (332)
409 PLN02166 dTDP-glucose 4,6-dehy 80.8 4.1 8.9E-05 49.1 7.7 34 504-543 119-153 (436)
410 PRK12826 3-ketoacyl-(acyl-carr 80.7 5.3 0.00011 43.3 8.0 36 105-141 3-39 (251)
411 COG1063 Tdh Threonine dehydrog 80.6 5.5 0.00012 46.5 8.5 97 507-633 171-267 (350)
412 PRK12367 short chain dehydroge 80.6 1.8 3.9E-05 47.8 4.3 40 498-543 7-47 (245)
413 PF02719 Polysacc_synt_2: Poly 80.6 0.69 1.5E-05 52.4 1.0 41 508-553 1-42 (293)
414 PRK07067 sorbitol dehydrogenas 80.6 2.8 6.1E-05 46.0 5.8 36 503-544 4-40 (257)
415 TIGR01772 MDH_euk_gproteo mala 80.6 2.7 5.8E-05 48.4 5.8 70 110-201 1-74 (312)
416 PLN02688 pyrroline-5-carboxyla 80.6 10 0.00022 42.2 10.4 76 110-214 2-81 (266)
417 PRK05866 short chain dehydroge 80.6 3.3 7.1E-05 46.9 6.5 34 503-542 38-72 (293)
418 TIGR00065 ftsZ cell division p 80.6 9 0.00019 44.8 10.1 113 99-230 8-140 (349)
419 cd00704 MDH Malate dehydrogena 80.5 1.7 3.6E-05 50.3 4.1 33 109-141 1-40 (323)
420 PRK05565 fabG 3-ketoacyl-(acyl 80.5 5.1 0.00011 43.3 7.8 33 503-541 3-37 (247)
421 PF02056 Glyco_hydro_4: Family 80.5 4.3 9.3E-05 43.0 6.7 109 507-642 1-113 (183)
422 PRK06940 short chain dehydroge 80.4 3.7 8.1E-05 45.9 6.8 31 505-542 2-32 (275)
423 PF13460 NAD_binding_10: NADH( 80.4 7 0.00015 40.4 8.4 86 508-631 1-91 (183)
424 PRK08251 short chain dehydroge 80.4 8.4 0.00018 41.9 9.5 60 108-187 2-62 (248)
425 PRK12480 D-lactate dehydrogena 80.4 1.5 3.2E-05 50.9 3.6 36 502-543 143-178 (330)
426 PF03949 Malic_M: Malic enzyme 80.4 1.9 4.1E-05 47.9 4.3 39 104-142 21-69 (255)
427 COG1091 RfbD dTDP-4-dehydrorha 80.4 8.4 0.00018 43.5 9.4 90 110-229 2-100 (281)
428 PRK06129 3-hydroxyacyl-CoA deh 80.3 7.7 0.00017 44.4 9.5 104 109-232 3-121 (308)
429 PRK13529 malate dehydrogenase; 80.2 0.91 2E-05 55.4 1.9 118 501-637 291-417 (563)
430 PRK12550 shikimate 5-dehydroge 80.1 2.3 5E-05 47.9 5.0 32 109-140 123-154 (272)
431 PRK08655 prephenate dehydrogen 80.1 3.2 7E-05 50.0 6.5 90 506-637 1-93 (437)
432 KOG0069 Glyoxylate/hydroxypyru 80.1 6.3 0.00014 45.5 8.5 81 102-213 156-237 (336)
433 PRK11730 fadB multifunctional 80.1 2.6 5.7E-05 54.0 6.0 32 506-543 314-345 (715)
434 TIGR01181 dTDP_gluc_dehyt dTDP 80.1 9.3 0.0002 42.9 10.0 31 110-140 1-33 (317)
435 cd05213 NAD_bind_Glutamyl_tRNA 80.0 1.5 3.2E-05 50.4 3.4 35 503-542 176-210 (311)
436 PRK09880 L-idonate 5-dehydroge 79.9 9.9 0.00021 43.9 10.3 34 107-140 169-202 (343)
437 COG1063 Tdh Threonine dehydrog 79.8 4.9 0.00011 46.9 7.8 89 108-219 169-263 (350)
438 COG1893 ApbA Ketopantoate redu 79.8 5.3 0.00011 45.9 7.8 23 506-528 1-23 (307)
439 PRK12939 short chain dehydroge 79.8 3.7 7.9E-05 44.6 6.3 33 503-541 5-38 (250)
440 PRK12744 short chain dehydroge 79.7 4.1 8.9E-05 44.8 6.8 27 503-529 6-33 (257)
441 PRK15059 tartronate semialdehy 79.7 5.2 0.00011 45.5 7.7 108 110-231 2-121 (292)
442 PRK05875 short chain dehydroge 79.7 5.2 0.00011 44.4 7.6 34 503-542 5-39 (276)
443 PRK06141 ornithine cyclodeamin 79.6 5.3 0.00011 46.0 7.8 137 431-614 48-199 (314)
444 PRK10537 voltage-gated potassi 79.5 4.4 9.6E-05 48.1 7.3 37 504-546 239-275 (393)
445 TIGR02853 spore_dpaA dipicolin 79.4 1.6 3.4E-05 49.7 3.4 35 502-542 148-182 (287)
446 TIGR02279 PaaC-3OHAcCoADH 3-hy 79.4 7.8 0.00017 47.6 9.6 104 109-232 6-123 (503)
447 PRK06057 short chain dehydroge 79.3 2.1 4.6E-05 47.0 4.3 36 502-543 4-40 (255)
448 cd01339 LDH-like_MDH L-lactate 79.3 4.6 9.9E-05 46.1 7.2 31 508-543 1-31 (300)
449 TIGR03466 HpnA hopanoid-associ 79.3 4.5 9.7E-05 45.9 7.1 32 506-543 1-33 (328)
450 TIGR03589 PseB UDP-N-acetylglu 79.2 5.1 0.00011 46.1 7.6 37 503-543 2-39 (324)
451 TIGR00936 ahcY adenosylhomocys 79.2 7.8 0.00017 46.2 9.1 94 106-232 193-286 (406)
452 PRK05225 ketol-acid reductoiso 79.2 4.4 9.5E-05 48.5 6.9 110 93-232 17-133 (487)
453 PRK06139 short chain dehydroge 79.2 3.6 7.8E-05 47.6 6.3 35 502-542 4-39 (330)
454 PRK10669 putative cation:proto 79.1 7.9 0.00017 48.2 9.7 84 108-219 417-506 (558)
455 PLN02688 pyrroline-5-carboxyla 79.1 7.8 0.00017 43.2 8.8 24 506-529 1-24 (266)
456 COG1250 FadB 3-hydroxyacyl-CoA 79.1 3.7 8E-05 47.0 6.2 107 506-640 4-121 (307)
457 KOG1014 17 beta-hydroxysteroid 79.0 8 0.00017 44.0 8.6 83 502-612 47-134 (312)
458 PRK00676 hemA glutamyl-tRNA re 79.0 1.6 3.5E-05 50.5 3.3 35 502-541 171-205 (338)
459 PRK00811 spermidine synthase; 79.0 4.9 0.00011 45.5 7.2 55 85-142 56-110 (283)
460 cd05298 GH4_GlvA_pagL_like Gly 78.9 4.1 8.8E-05 49.1 6.8 106 110-237 2-115 (437)
461 PRK08291 ectoine utilization p 78.8 5.8 0.00013 46.0 7.9 142 430-614 52-207 (330)
462 cd00762 NAD_bind_malic_enz NAD 78.7 1.5 3.2E-05 48.7 2.7 45 501-545 21-70 (254)
463 PRK05875 short chain dehydroge 78.6 9.2 0.0002 42.4 9.3 34 106-140 5-39 (276)
464 PRK06720 hypothetical protein; 78.6 5.1 0.00011 41.8 6.6 35 503-543 14-49 (169)
465 PRK03806 murD UDP-N-acetylmura 78.6 6.3 0.00014 47.4 8.4 122 106-262 4-126 (438)
466 PRK00045 hemA glutamyl-tRNA re 78.5 1.7 3.7E-05 52.1 3.5 35 503-542 180-214 (423)
467 PRK06181 short chain dehydroge 78.4 6.3 0.00014 43.3 7.8 31 506-542 2-33 (263)
468 TIGR02622 CDP_4_6_dhtase CDP-g 78.4 5.9 0.00013 45.9 7.9 35 106-141 2-37 (349)
469 PRK12859 3-ketoacyl-(acyl-carr 78.4 5 0.00011 44.2 6.9 34 502-541 3-39 (256)
470 PLN02896 cinnamyl-alcohol dehy 78.4 20 0.00043 41.6 12.2 33 107-140 9-42 (353)
471 TIGR01202 bchC 2-desacetyl-2-h 78.3 7.1 0.00015 44.5 8.3 82 107-219 144-225 (308)
472 PRK00421 murC UDP-N-acetylmura 78.2 4.2 9.2E-05 49.2 6.8 88 107-226 6-95 (461)
473 TIGR01327 PGDH D-3-phosphoglyc 78.2 2.6 5.6E-05 52.0 5.0 35 502-542 135-169 (525)
474 TIGR02853 spore_dpaA dipicolin 78.2 2.6 5.7E-05 47.8 4.7 35 105-140 148-182 (287)
475 PRK12827 short chain dehydroge 78.1 5.1 0.00011 43.3 6.8 33 503-541 4-37 (249)
476 PRK07814 short chain dehydroge 78.1 4.6 9.9E-05 44.6 6.6 35 503-543 8-43 (263)
477 PRK07340 ornithine cyclodeamin 78.1 4.2 9E-05 46.6 6.3 75 503-614 123-198 (304)
478 PRK11154 fadJ multifunctional 78.1 2.1 4.7E-05 54.7 4.4 170 506-698 310-486 (708)
479 PRK07530 3-hydroxybutyryl-CoA 78.1 2 4.4E-05 48.7 3.8 33 505-543 4-36 (292)
480 PRK06398 aldose dehydrogenase; 78.0 4.9 0.00011 44.3 6.8 36 502-543 3-39 (258)
481 TIGR01850 argC N-acetyl-gamma- 78.0 5.2 0.00011 46.7 7.2 98 506-637 1-100 (346)
482 cd00762 NAD_bind_malic_enz NAD 78.0 1.8 3.9E-05 48.0 3.2 40 104-143 21-70 (254)
483 TIGR00137 gid_trmFO tRNA:m(5)U 78.0 2 4.3E-05 51.5 3.8 32 506-543 1-32 (433)
484 TIGR00036 dapB dihydrodipicoli 77.9 7.6 0.00016 43.6 8.2 118 109-232 2-129 (266)
485 PRK08416 7-alpha-hydroxysteroi 77.7 6 0.00013 43.6 7.4 34 502-541 5-39 (260)
486 PRK06035 3-hydroxyacyl-CoA deh 77.7 2.1 4.5E-05 48.6 3.7 33 506-544 4-36 (291)
487 PRK00676 hemA glutamyl-tRNA re 77.7 2.8 6E-05 48.6 4.7 38 105-142 171-208 (338)
488 PRK12550 shikimate 5-dehydroge 77.6 2.3 4.9E-05 48.0 3.9 31 506-541 123-153 (272)
489 PRK07097 gluconate 5-dehydroge 77.6 4.6 0.0001 44.6 6.4 34 502-541 7-41 (265)
490 PRK08278 short chain dehydroge 77.6 5.6 0.00012 44.4 7.1 35 503-543 4-39 (273)
491 PRK06046 alanine dehydrogenase 77.6 9.3 0.0002 44.2 9.1 75 107-204 128-203 (326)
492 TIGR01181 dTDP_gluc_dehyt dTDP 77.5 8 0.00017 43.4 8.5 32 507-542 1-33 (317)
493 PRK14192 bifunctional 5,10-met 77.4 4 8.7E-05 46.3 5.8 35 105-140 156-191 (283)
494 TIGR03206 benzo_BadH 2-hydroxy 77.4 4.7 0.0001 43.8 6.4 35 503-543 1-36 (250)
495 PRK11199 tyrA bifunctional cho 77.4 5.6 0.00012 46.9 7.3 32 506-543 99-131 (374)
496 PRK07102 short chain dehydroge 77.3 8.1 0.00017 42.0 8.1 32 506-543 2-34 (243)
497 PRK11199 tyrA bifunctional cho 77.3 6.7 0.00015 46.3 7.9 32 109-141 99-131 (374)
498 PRK08268 3-hydroxy-acyl-CoA de 77.2 9.5 0.00021 46.9 9.4 104 109-232 8-125 (507)
499 PRK13018 cell division protein 77.2 17 0.00036 43.0 10.9 107 105-230 25-151 (378)
500 PRK07478 short chain dehydroge 77.2 7.8 0.00017 42.4 8.0 35 105-140 3-38 (254)
No 1
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-264 Score=2255.99 Aligned_cols=1005 Identities=58% Similarity=0.999 Sum_probs=974.7
Q ss_pred cCCCCCCCCchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecc
Q 001356 76 MGLGNGNPSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFS 155 (1093)
Q Consensus 76 ~~~~~~~~~~~~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~ 155 (1093)
|..++.+..+||+++||||+|++|.++|+||+.++|||+|++|||.||||||+|+||+++||+|...+.++||++|||++
T Consensus 5 ~~~~~~a~~~IDE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~ 84 (1013)
T KOG2012|consen 5 MMDGNSASQEIDESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLS 84 (1013)
T ss_pred ccccCcchhhhhhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeee
Confidence 33444457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccchHHHHHHHHHHHhCCCcEEEEeecccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEE
Q 001356 156 EDDVGKNRALASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGN 235 (1093)
Q Consensus 156 ~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~ 235 (1093)
++|||+|||+++.++|++||++|.|.++++.++++++++|+|||+|+.+.+.+.+||++||+++ |.||.++++|++|+
T Consensus 85 E~DigknRA~as~~~LaeLN~yV~V~v~t~~~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~--i~fi~ad~RGLfg~ 162 (1013)
T KOG2012|consen 85 EEDIGKNRAEASVEKLAELNNYVPVVVLTGPLTEEFLSDFQVVVLTDASLEEQLKINDFCHSHG--IAFIAADTRGLFGQ 162 (1013)
T ss_pred HHhcCCchHHHHHHHHHHhhcceeeEEecCcccHHHHhCCcEEEEecCchHHHHHHHHHHHhcC--eEEEEeccchhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEeecCCceEEecCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCccccc
Q 001356 236 IFCDFGPEFTVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSI 315 (1093)
Q Consensus 236 vf~d~g~~f~v~d~~ge~p~~~~i~~I~~~~p~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i 315 (1093)
+|||||++|+|.|.+|++|.+++|.+|++++|++|||+++.||+|+|||+|+|+||+||+++|+|+|++|++++||+|+|
T Consensus 163 lFCDFG~eF~v~D~tGeeP~t~mI~~Is~d~pGvvT~ld~~rH~lEdGd~V~FsEveGm~eLN~~~P~kI~v~~p~sf~I 242 (1013)
T KOG2012|consen 163 LFCDFGEEFTVLDPTGEEPLTGMIASISQDNPGVVTCLDGARHGFEDGDLVTFSEVEGMTELNDCKPRKITVLGPYSFSI 242 (1013)
T ss_pred hhccCCCceEEeCCCCCcchhhHHhhccCCCCceEEEecCccccCccCCEEEEEeeccccccCCCCceEEEEecCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccccccCCeEEEeecCeeecccchHHhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCCHHHH
Q 001356 316 DEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDA 395 (1093)
Q Consensus 316 ~~dt~~f~~y~~gg~~~qvk~p~~~~f~sL~e~l~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~~~D~ 395 (1093)
+||+.|+.|..||+++|||+|++++|+||+++|.+| +++.+|++|++|+++||++|+||++|.+.|||+|.+++++|+
T Consensus 243 -gdt~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P-~fl~~df~k~~rp~~lH~af~AL~~F~~~~Gr~P~p~~e~DA 320 (1013)
T KOG2012|consen 243 -GDTTEFGEYKKGGIFTQVKVPKTISFKSLREALKEP-EFLISDFAKFDRPPQLHLAFQALHQFQEAHGRLPRPGNEEDA 320 (1013)
T ss_pred -ccccchhhhhcCceeEEeecCceEecccHHHhhcCC-CeeeeccccccccHHHHHHHHHHHHHHHHhCCCCCCCChhhH
Confidence 579999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccccccCHHHHHHHHhhccCccCchhhhhccchhHHHHHhhccCcccccceeeccCCCCCCCC-
Q 001356 396 QKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPSE- 474 (1093)
Q Consensus 396 ~~~~~ia~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~lp~~- 474 (1093)
++|+.++..+.+..+ ...++++++|++|++.+++.|.||+|++||+|||||+|+|||||+||.||||||++||||++
T Consensus 321 ~~l~~l~~~i~~~~~--~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~sgKF~PL~Q~lYfDale~LP~d~ 398 (1013)
T KOG2012|consen 321 EELVELARDISEGLG--LEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACSGKFTPLKQWLYFDALESLPSDN 398 (1013)
T ss_pred HHHHHHHHHhhhhcc--ccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhccCccchhHheehhhHhhCCCcC
Confidence 999999999988655 24689999999999999999999999999999999999999999999999999999999975
Q ss_pred -CCCCCCCCCccCcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcc
Q 001356 475 -PLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQ 553 (1093)
Q Consensus 475 -~~~~~~~~~~~~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQ 553 (1093)
++++++++|.++|||.||++||...|+||.++++|+|||||||||+|||||+|||+||..|.|+|+|||.||.||||||
T Consensus 399 ~~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQ 478 (1013)
T KOG2012|consen 399 LPPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQ 478 (1013)
T ss_pred CCCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccce
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccccchHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceE
Q 001356 554 FLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 633 (1093)
Q Consensus 554 flf~~~dvG~~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli 633 (1093)
||||.+|||++||++||++++.|||+++|+++..+++++||++|+++||++.|+|++||||+.||+|++++|+.+.+||+
T Consensus 479 FLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLL 558 (1013)
T KOG2012|consen 479 FLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLL 558 (1013)
T ss_pred eeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCcccceEEEeCCcccccCcCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhHhhhcCCcHHHHHH
Q 001356 634 ESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASA 713 (1093)
Q Consensus 634 ~sgt~G~~G~v~v~ip~~t~~y~~~~~p~~~~~p~Ct~~~~P~~~~hci~wA~~~f~~~f~~~~~~~~~~l~~~~~~~~~ 713 (1093)
+|||+|++|++|+++|++||+|++++|||+|++|+||+++||+.++|||+|||+.||++|.+.++++|+||++|..+...
T Consensus 559 ESGTlGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~eFEg~F~~~~e~vN~yls~p~f~e~s 638 (1013)
T KOG2012|consen 559 ESGTLGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARDEFEGLFKQSAENVNKYLSDPVFYETS 638 (1013)
T ss_pred hccCcCCccceeEEeccccccccccCCCcccCCceeeeccCchHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977777
Q ss_pred hhhcCchhHHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCccccc
Q 001356 714 MKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFS 793 (1093)
Q Consensus 714 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd 793 (1093)
++..++.+.++.|++|.+.|. .+|.+|+||++|||..|+++|+++|+|||++||+|++|++|+||||||||||+||+||
T Consensus 639 l~~~~~~~~~~~l~~v~~~l~-~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~t~~G~pFWs~pKr~P~pl~Fd 717 (1013)
T KOG2012|consen 639 LKLIGEPQSLETLERVVDCLS-ERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAKTSDGAPFWSGPKRCPRPLEFD 717 (1013)
T ss_pred HhhccCcchhHHHHHHHHHhh-cCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccccCCCCcCCCCCCCCCCceeec
Confidence 888888899999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHcCCCCCCCCCChhHHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHH
Q 001356 794 VDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQ 873 (1093)
Q Consensus 794 ~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~ 873 (1093)
.+|++|+.||++||+|||++|||+.. .+.+.++.++..+++|+|+|+++++|.+++.+...++.+.|+...+++|..
T Consensus 718 ~n~~~hl~fv~Aaa~l~a~~~gi~~~---~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~~~~~~~s~d~~~~i~~l~~ 794 (1013)
T KOG2012|consen 718 VNDPLHLNFVQAAANLRAEVYGIPGS---QDREALAELLERVIVPEFEPKQKVKIVVEEAELAASSASVDDSAAIDQLNK 794 (1013)
T ss_pred CCCchhHHHHHHHHHHHHHhcCCCcc---cCHHHhhhhHhhcCCCccccccCCeecccccccccccccCCchHHHHHHhh
Confidence 99999999999999999999999984 556799999999999999999999999998877777778888889999999
Q ss_pred HHHHhhhcCCCCCCCCCceeeccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHH
Q 001356 874 KLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLEL 953 (1093)
Q Consensus 874 ~l~~~~~~~~~~~~~~~~~FeKDDd~n~hidFv~aasNLRA~ny~I~~~~~~~~K~iAG~IIPAIATTtA~VaGl~~lEl 953 (1093)
.+..+.. ..+++|.|+.||||||+|+|||||+|||||||.||+||++||+++|+|||+||||||||||+|+||+|||+
T Consensus 795 ~l~~~~~--~~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~IaGkIIPAIATtTa~v~Glv~LEl 872 (1013)
T KOG2012|consen 795 ALPSPSV--LPSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIAGKIIPAIATTTAAVSGLVCLEL 872 (1013)
T ss_pred ccccccc--CCCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheeeeeEEEEEeehhHHHHHHHHhhh
Confidence 9887765 45689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcccccccccccccccccccCCCCCCccc-cCCcceeEEeEEEeCCCCcHHHHHHHHHHc-CCceeeeecCC
Q 001356 954 YKVLDGGHKLEDYRNTFANLALPLFSMAEPVPPKVFK-HQDMSWTVWDRWILRDNPTLRQLLQWLQDK-GLNAYSISYGS 1031 (1093)
Q Consensus 954 ~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~~~~~-~~~~~~t~wd~~~v~~~~TL~~li~~~~~~-~l~~~~i~~g~ 1031 (1093)
||++.|+.+++.|||+|+|||+|+|+++||.|+++.. +.+.+||+||||++.|++||++|+++++++ |++++||++|+
T Consensus 873 yKv~~G~~~~e~~Kn~flnLAlp~f~~~ep~~~pk~~~~~~~~~tlWdR~~v~g~~tL~~~L~~~~~~~gl~i~mls~G~ 952 (1013)
T KOG2012|consen 873 YKVVDGKRPVEAYKNTFLNLALPFFSFAEPLAAPKVQYHNDLSWTLWDRWEVKGEPTLREFLDHLEEQHGLEITMLSQGV 952 (1013)
T ss_pred hhhccCCCchHHhhhhhhcccccceeecccCCCcceeeecccceeeeEEEEecCCCCHHHHHHHHhhhcCceEEEEeccc
Confidence 9999998899999999999999999999999977766 455699999999999999999999999988 99999999999
Q ss_pred ceeeccCCcchhhcccCcHHHHHHhhhcCCCCCCeeEEEEEEEeecCCCCccccCeEEEEe
Q 001356 1032 CLLFNSMFPRHKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYF 1092 (1093)
Q Consensus 1032 ~~LY~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~l~v~~~d~~~~~~~~P~v~~~~ 1092 (1093)
+|||++|||++++||+++++||++.++|+++|+++++|+|+++|+|++|+||++|+|||+|
T Consensus 953 ~lly~~~~~k~~erl~~~v~elv~~~~k~~~~~~~~~lvle~~~~d~~~eDve~P~v~y~f 1013 (1013)
T KOG2012|consen 953 SLLYASFMPKHAERLPLRVTELVRDVTKKKLPPHVRHLVLEVACEDDDDEDVEVPPVRYYF 1013 (1013)
T ss_pred eeehhhhhhHHHHhcCCcHHHHHHHHhcccCCCcceEEEEEEecCCCCCCcCCCCceEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999987
No 2
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.8e-233 Score=2160.95 Aligned_cols=1005 Identities=51% Similarity=0.878 Sum_probs=961.8
Q ss_pred chhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHH
Q 001356 85 DIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRA 164 (1093)
Q Consensus 85 ~~~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka 164 (1093)
++|+++|||||++||.++|+||++++|||+|+||||+|+||||+|+|||+|+|+|++.|+.+||+||||++++|||++||
T Consensus 1 ~id~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Ka 80 (1008)
T TIGR01408 1 EIDEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRA 80 (1008)
T ss_pred CchHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeecccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeecCCce
Q 001356 165 LASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEF 244 (1093)
Q Consensus 165 ~a~~~~L~eLNp~V~V~~~~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~g~~f 244 (1093)
++++++|++|||+|+|+++...++++++++||+||+|.++.+.+..||++||++++|||||++++.|++|++|+|||++|
T Consensus 81 ea~~~~L~eLNp~V~V~~~~~~l~~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~~f 160 (1008)
T TIGR01408 81 EAVVKKLAELNPYVHVSSSSVPFNEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDEF 160 (1008)
T ss_pred HHHHHHHHHHCCCceEEEecccCCHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCCce
Confidence 99999999999999999999999999999999999999999999999999999997789999999999999999999999
Q ss_pred EEecCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCcccccc
Q 001356 245 TVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDTTNYSA 324 (1093)
Q Consensus 245 ~v~d~~ge~p~~~~i~~I~~~~p~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~ 324 (1093)
.|.|.+|+.|.++.|.+|+++++++|+++++.+|++++||+|+|+||+||+++|+++|++|++.++|+|.| +||+.|++
T Consensus 161 ~~~d~~ge~p~~~~i~~i~~~~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~i~~~~~~~f~i-~dt~~~~~ 239 (1008)
T TIGR01408 161 EVLDTDGEEPKTGFIASITQANPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITVISPYSFSI-GDTTELGP 239 (1008)
T ss_pred EEEeCCCCCCCcccccccccCCCceEEeecCcccCCcCCCEEEEeecccccccCCCCceeEEecCCceEEe-ccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 59999999
Q ss_pred cccCCeEEEeecCeeecccchHHhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Q 001356 325 YEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTN 404 (1093)
Q Consensus 325 y~~gg~~~qvk~p~~~~f~sL~e~l~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~~~~ia~~ 404 (1093)
|.+||+++|+|+|++++|+||+++|.+| +++++||+|++|++++|++|+||++|.++|||+|.+++.+|++++++++++
T Consensus 240 y~~gG~~~qvK~p~~~~Fksl~~~l~~p-~~~~~d~~k~~r~~~lh~~~~aL~~f~~~~g~~P~~~~~~d~~~~~~~a~~ 318 (1008)
T TIGR01408 240 YLHGGIATQVKTPKTVFFKSLREQLKDP-KCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEELLKLATS 318 (1008)
T ss_pred hhcCceEEEEeccccccccCHHHHHcCC-cccccchhhcCCchhHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccccccCHHHHHHHHhhccCccCchhhhhccchhHHHHHhhccCcccccceeeccCCCCCCCC-CCCCCCCCC
Q 001356 405 INDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPSE-PLDPRDLQP 483 (1093)
Q Consensus 405 i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~lp~~-~~~~~~~~~ 483 (1093)
++++.+.. .+.+++++++.|+++++++++||||++||++||||||+|||||+||+||||||++++||.. .+..+++.+
T Consensus 319 i~~~~~~~-~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~Pi~q~~~~D~~e~l~~~~~~~~~~~~~ 397 (1008)
T TIGR01408 319 ISETLEEK-VPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPLCQWFYFDSAESLPSLGKPECEEFLP 397 (1008)
T ss_pred HHHhcCCC-cccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCCCceeeEEeehhhhCCcccCcchhhccc
Confidence 98876432 3569999999999999999999999999999999999999999999999999999999975 344557788
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcccc
Q 001356 484 LNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 563 (1093)
Q Consensus 484 ~~~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~ 563 (1093)
.++|||||+++||.++|++|++++|+||||||||||+|||||++||+||++|+|+|+|+|+||.|||||||||+.+|||+
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk 477 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGK 477 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccc
Q 001356 564 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 643 (1093)
Q Consensus 564 ~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~ 643 (1093)
+||++|+++++++||+++|+++..++.++++++|+++||+++|+||+|+||+.+|+++|++|+.+++|+|++|+.|++|+
T Consensus 478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~ 557 (1008)
T TIGR01408 478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGN 557 (1008)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceee
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccccCcCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhHhhhcCCcHHHHHHhhhcCchhHH
Q 001356 644 TQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQAR 723 (1093)
Q Consensus 644 v~v~ip~~t~~y~~~~~p~~~~~p~Ct~~~~P~~~~hci~wA~~~f~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 723 (1093)
+++++|++|+||+|+++|+++++|+||+++||+.++|||+|||++|+++|++.++++|+|+++|.+|.+.+.+....+..
T Consensus 558 v~v~ip~~te~y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1008)
T TIGR01408 558 TQVVVPHLTESYGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARDKFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSR 637 (1008)
T ss_pred EEEEeCCCcCCCCCCCCCCCCCCCcccccCCCCCchHHHHHHHHHHHHHHHhhHHHHHHHhhChHHHHHHHHhcCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888777778
Q ss_pred HhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcchhHHHH
Q 001356 724 DNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFL 803 (1093)
Q Consensus 724 ~~l~~~~~~l~~~~~~~~~~c~~~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~~h~~fi 803 (1093)
+.|+.+++.|...+|.+|+|||+|||.+|+++|+++|+|||++||+|++|++|+||||||||||+||+||.+|++|++||
T Consensus 638 ~~l~~i~~~l~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi 717 (1008)
T TIGR01408 638 EGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFI 717 (1008)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCccccCCCCCCCceeeCCCCHHHHHHH
Confidence 89999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCChhHHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHHHHHHhhhcCC
Q 001356 804 MAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLP 883 (1093)
Q Consensus 804 ~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 883 (1093)
.++|||||++|||+.++++.+.+.+.++++++.+|+|.|+.++++..+|++.+.+....++.+.++.|.++|...... .
T Consensus 718 ~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~ 796 (1008)
T TIGR01408 718 QAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEAT-K 796 (1008)
T ss_pred HHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecChhhhcccccccchHHHHHHHHHHhhccccc-c
Confidence 999999999999998765555689999999999999999999999998876554433344566788888887765431 1
Q ss_pred CCCCCCCceeeccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhcCCCCc
Q 001356 884 TGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKL 963 (1093)
Q Consensus 884 ~~~~~~~~~FeKDDd~n~hidFv~aasNLRA~ny~I~~~~~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~ 963 (1093)
.+++++|++||||||+|+|||||+|||||||+||+||++|||++|+||||||||||||||+||||||||+||+++|.+++
T Consensus 797 ~~~~~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i 876 (1008)
T TIGR01408 797 SDFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKF 876 (1008)
T ss_pred CCCCCCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccH
Confidence 23789999999999999999999999999999999999999999999999999999999999999999999999997789
Q ss_pred ccccccccccccccccccCCCCCCccccCCcce-eEEeEEEeCCCCcHHHHHHHHHHc-CCceeeeecCCceeeccCCcc
Q 001356 964 EDYRNTFANLALPLFSMAEPVPPKVFKHQDMSW-TVWDRWILRDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSMFPR 1041 (1093)
Q Consensus 964 ~~~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~-t~wd~~~v~~~~TL~~li~~~~~~-~l~~~~i~~g~~~LY~~~~~~ 1041 (1093)
+.|||+|+|||+|+|.|+||.||++.++.+..| |+||||++.+++||++|+++|+++ |+++.||++|++|||++||++
T Consensus 877 ~~~kn~f~nlalp~~~~seP~~~~~~~~~~~~~~t~WDr~~i~~~~Tl~~~i~~~~~~~~~~v~~is~g~~~lY~~~~~~ 956 (1008)
T TIGR01408 877 EVYKNCFLNLAIPLFVFTEPTEVRKTKIRNGISFTIWDRWTLHGDFTLLEFINAVKEKYGLEPTMVSQGVKLLYVPVMPG 956 (1008)
T ss_pred HHHhHHHHhhccccccccCCCCCCceeecCceeccceEEEEecCCCcHHHHHHHHHHHhCCeeEEEEcCceEEEeccchh
Confidence 999999999999999999999999999888899 999999999999999999999999 999999999999999999988
Q ss_pred hhhcccCcHHHHHHhhhcCCCCCCeeEEEEEEEeecCCCCccccCeEEEEeC
Q 001356 1042 HKERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQISIYFS 1093 (1093)
Q Consensus 1042 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~l~v~~~d~~~~~~~~P~v~~~~~ 1093 (1093)
+++||+++|+||+++++|+++|++++||+|+++|+|++|+||++|+|+|+||
T Consensus 957 ~~erl~~~l~el~~~~~k~~~~~~~~~l~~~~~~~d~~~~dv~~P~v~~~~~ 1008 (1008)
T TIGR01408 957 HAERLKLKMHKLVKPTTKKKLPPYRVHLTVSFACDDDGDEDVPGPPVRIYFS 1008 (1008)
T ss_pred hHHhcCCCHHHHHHHhccCCCCCCceEEEEEEEeecCCCCcccCCeEEEEeC
Confidence 8999999999999999999999999999999999999999999999999986
No 3
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=9e-120 Score=1040.54 Aligned_cols=430 Identities=59% Similarity=1.060 Sum_probs=413.6
Q ss_pred cEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEEEe
Q 001356 507 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 586 (1093)
Q Consensus 507 ~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~~ 586 (1093)
||+||||||||||++|+||++||+||++|+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccceEEEeCCcccccCcCCCCCCCCC
Q 001356 587 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 666 (1093)
Q Consensus 587 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~v~v~ip~~t~~y~~~~~p~~~~~ 666 (1093)
.++.++++.+|+++||+++|+||+|+||+++|++||++|+.+++|+|++|+.|++|++++++|+.|+||.|..+|+++.+
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~ 160 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSI 160 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCC
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCChhhHHHHHHHHhhhhhccChhhHhhhcCCcHHHHHHhhhcCchhHHHhHHHHHHHhhhhcccchHHHHH
Q 001356 667 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCIT 746 (1093)
Q Consensus 667 p~Ct~~~~P~~~~hci~wA~~~f~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~ 746 (1093)
|+||+++||+.++|||+|||++|+++|++.++++|+|+ |+||++
T Consensus 161 P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~~~~~~~~------------------------------------~~~c~~ 204 (435)
T cd01490 161 PLCTLKNFPNAIEHTIQWARDEFEGLFKQPPENVNQYL------------------------------------FEDCVR 204 (435)
T ss_pred CCccccCCCCCchHHHHHHHHHHHHHhccchHHHHHhh------------------------------------HHHHHH
Confidence 99999999999999999999999999999887665433 679999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcchhHHHHHHHHHHHHHHcCCCCCCCCCChh
Q 001356 747 WARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPV 826 (1093)
Q Consensus 747 ~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~ 826 (1093)
||+.+|+++|+++|+|||++||+|+++++|++||+|+||+|+|++||.+|+.|+.||.++|+|+|++|||+
T Consensus 205 ~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~--------- 275 (435)
T cd01490 205 WARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIP--------- 275 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999988752
Q ss_pred HHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHHHHHHhhhcCCCCCCCCCceeeccCCCCchhHHH
Q 001356 827 KLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLI 906 (1093)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~FeKDDd~n~hidFv 906 (1093)
+ ||||||+|+|||||
T Consensus 276 ---------------------------------------------------------------~--FeKDdd~n~h~~fi 290 (435)
T cd01490 276 ---------------------------------------------------------------G--FEKDDDTNFHMDFI 290 (435)
T ss_pred ---------------------------------------------------------------c--cccCCchhHHHHHH
Confidence 0 99999999999999
Q ss_pred HHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhcCCCCcccccccccccccccccccCCCCC
Q 001356 907 AGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLALPLFSMAEPVPP 986 (1093)
Q Consensus 907 ~aasNLRA~ny~I~~~~~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~p~~~~~eP~~~ 986 (1093)
+|||||||+||+|+++||+++|+||||||||||||||+||||+|+|+||++++..+++.|||+|+|||+|+|.|+||.+|
T Consensus 291 ~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~~~~~~~n~~~nla~p~~~~~~p~~~ 370 (435)
T cd01490 291 TAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKRPLEAYKNAFLNLALPFFAFSEPIPA 370 (435)
T ss_pred HHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCccHHHcchHhhhccCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999878999999999999999999999999
Q ss_pred Ccccc-CCcceeEEeEEEeCCCCcHHHHH-HHHHHc-CCceeeeecCCceeeccCCc--chhhcc
Q 001356 987 KVFKH-QDMSWTVWDRWILRDNPTLRQLL-QWLQDK-GLNAYSISYGSCLLFNSMFP--RHKERM 1046 (1093)
Q Consensus 987 ~~~~~-~~~~~t~wd~~~v~~~~TL~~li-~~~~~~-~l~~~~i~~g~~~LY~~~~~--~~~~~l 1046 (1093)
++.++ .+.+||+||||+|.+++||++|+ ++|+++ |+++.||++|++|||++||| ++++||
T Consensus 371 ~~~~~~~~~~~t~Wdr~~v~~~~t~~~~~~~~~~~~~~~~v~~i~~g~~~ly~~~~~~~~~~~r~ 435 (435)
T cd01490 371 PKVKYAYDEEWTIWDRFEVKGKQTLQELLIDYFKEKYGLEVTMLSQGVSMLYSSFMPPAKLKERL 435 (435)
T ss_pred CccccCCCCEEeeEeEEEEcCCCcHHHHHHHHHHHHhCCeEEEEEeCCeEEEeecCCchhhhhcC
Confidence 98887 78899999999999999999999 999999 99999999999999999987 345554
No 4
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-80 Score=683.99 Aligned_cols=471 Identities=31% Similarity=0.486 Sum_probs=343.9
Q ss_pred HHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhC
Q 001356 498 KLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALIN 577 (1093)
Q Consensus 498 ~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~n 577 (1093)
+.++.+.++|||||||||||||+||+||++|+ ++|+|||.|+|++||||||||||.+|||++||.+|++.++++|
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf-----~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fn 79 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGF-----EEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFN 79 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcC-----CeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhC
Confidence 45788899999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccceEEEeCCcccccCc
Q 001356 578 PHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGA 657 (1093)
Q Consensus 578 p~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~v~v~ip~~t~~y~~ 657 (1093)
|++++.+|+..+.+. -|+.+||++||+|++||||.+||+|+|++|...++|||+|||.|+.||+++++++.||||.|
T Consensus 80 pn~~l~~yhanI~e~---~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC 156 (603)
T KOG2013|consen 80 PNIKLVPYHANIKEP---KFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYEC 156 (603)
T ss_pred CCCceEeccccccCc---chHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecc
Confidence 999999999988753 36778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCChhhHHHHHH-HHhhhhhccChhhH-hhhc-CCcHHHHHHh--hhcCc-hhHHHhHHHHHH
Q 001356 658 SRDPPEKQAPMCTVHSFPHNIDHCLTWAR-SEFEGLLEKTPAEV-NAYL-TSPTEYASAM--KNAGD-AQARDNLDRVLE 731 (1093)
Q Consensus 658 ~~~p~~~~~p~Ct~~~~P~~~~hci~wA~-~~f~~~f~~~~~~~-~~~l-~~~~~~~~~~--~~~~~-~~~~~~l~~~~~ 731 (1093)
...|.++++|+||+|+.|+.++|||.||| .+|.++|+.....- .... .||..- +.+ ..... ....+..++ ++
T Consensus 157 ~pK~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~-e~~t~~~~~~~~et~d~~Er-~~ 234 (603)
T KOG2013|consen 157 IPKPVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNC-EDMTEEEAEAFRETEDLKER-RE 234 (603)
T ss_pred cCCCCCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhh-hccChhhhhhhccchHHHHH-HH
Confidence 99999999999999999999999999999 47999998743321 1111 122211 111 00000 000111111 11
Q ss_pred HhhhhcccchHHHHHHH-------HHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcchhHHHHH
Q 001356 732 CLDKERCETFQDCITWA-------RLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLM 804 (1093)
Q Consensus 732 ~l~~~~~~~~~~c~~~a-------~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~~h~~fi~ 804 (1093)
.-++|. ..+|.++|.++|..|+. ++.-|.. +++|.||.|...-+.-.
T Consensus 235 -----------~i~~~~~~~~~~~~~i~~klF~~dI~yl~~----------~e~~wk~-r~~p~pl~~~~~i~~~~---- 288 (603)
T KOG2013|consen 235 -----------SIVEIDKNLDFGPFKIFNKLFIYDIEYLLG----------MEALWKP-RSRPVPLSIAEVISTSL---- 288 (603)
T ss_pred -----------HHHHHhhccCCChhhhhhHHHHHHHHHHHh----------hhhhccC-CCCCCCcchhhccCCcc----
Confidence 112222 45789999999999996 5778986 77899999864321110
Q ss_pred HHHHHHHHHcCCCCCCCCCChhHHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHHHHHHhhhcCCC
Q 001356 805 AASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPT 884 (1093)
Q Consensus 805 ~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 884 (1093)
+ .+..+.+.+ +. +.. .+...+...+. ...+...++.|. .+.+.
T Consensus 289 ------------~---------t~ns~~q~~--~~--a~~-----~~~~v~~v~~~----~~vf~~~i~~l~---~~~~~ 331 (603)
T KOG2013|consen 289 ------------E---------TINSIVQSI--TS--AQL-----NDQNVWTVDEG----AVVFRLSIQALD---LRCPK 331 (603)
T ss_pred ------------c---------cccchhhhc--cc--ccc-----CCcceeeeccc----cHHHHHHHHHhc---ccCCc
Confidence 0 000111100 00 000 00111111110 112222222221 11111
Q ss_pred CCCCCCceeeccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhcCCCCcc
Q 001356 885 GYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLE 964 (1093)
Q Consensus 885 ~~~~~~~~FeKDDd~n~hidFv~aasNLRA~ny~I~~~~~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~~ 964 (1093)
....-.+.|||||.+ .|+||+||||+||+.|+||..++|++|.||||||||||||||+|||++|+|.+|+|+| ++.
T Consensus 332 ~~~h~~l~fdKdd~~--~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~eaiKvl~~--~~~ 407 (603)
T KOG2013|consen 332 ESDHWYLIFDKDDAS--TMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEAIKVLGG--DFD 407 (603)
T ss_pred cCCCceEEEcCCcHH--HHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhhhhHHHHHHHHHHHHHhcc--chh
Confidence 112234899999987 8999999999999999999999999999999999999999999999999999999987 467
Q ss_pred cccccccccccc-------cccccCCCCCCccccCCcceeEEeEEEeC-CCCcHHHHHHHH-HHc-CCceeeee-cCCce
Q 001356 965 DYRNTFANLALP-------LFSMAEPVPPKVFKHQDMSWTVWDRWILR-DNPTLRQLLQWL-QDK-GLNAYSIS-YGSCL 1033 (1093)
Q Consensus 965 ~~rn~f~nla~p-------~~~~~eP~~~~~~~~~~~~~t~wd~~~v~-~~~TL~~li~~~-~~~-~l~~~~i~-~g~~~ 1033 (1093)
+++++|++-... .+.+.+|.|.+..+.... -.+.+. ..+||..|+|.+ +.+ ++ .+.++ ....+
T Consensus 408 ~~~~~f~~~~~n~r~r~l~~~~~~~PNp~C~vCs~~~-----~~l~ln~~~~~~~~L~D~ivk~r~~~-~pdvsll~~~L 481 (603)
T KOG2013|consen 408 DCNMIFLAKRPNPRKRVLLPWALRPPNPNCPVCSEVP-----LVLELNTRKSTLRDLVDKIVKTRLGY-LPDVSLLDDDL 481 (603)
T ss_pred cceeeEEccCCCccceeecccccCCCCCCCccccccc-----eEEEeccccchHHHHHHHHHHHHhcc-Ccccchhhhhh
Confidence 888888753321 234455666555432221 123343 378999999975 555 77 44443 22456
Q ss_pred eeccCCcchhhcccCcHHHHH
Q 001356 1034 LFNSMFPRHKERMDKKVVDLV 1054 (1093)
Q Consensus 1034 LY~~~~~~~~~~l~~~l~~l~ 1054 (1093)
+|+. ..+++++|+|+||.
T Consensus 482 i~~~---d~e~n~~k~lsel~ 499 (603)
T KOG2013|consen 482 IDDM---DFEDNLDKTLSELG 499 (603)
T ss_pred cccc---cchhhhhhhHHhhC
Confidence 6653 56789999999994
No 5
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=7.6e-75 Score=646.83 Aligned_cols=304 Identities=40% Similarity=0.662 Sum_probs=280.5
Q ss_pred cEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEEEe
Q 001356 507 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 586 (1093)
Q Consensus 507 ~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~~ 586 (1093)
||+||||||+|||++||||++|| |+|+|+|+|+||.|||+|||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-----g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~ 75 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-----GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYH 75 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-----CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccceEEEeCCcccccCcCCCCCCCCC
Q 001356 587 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 666 (1093)
Q Consensus 587 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~v~v~ip~~t~~y~~~~~p~~~~~ 666 (1093)
.++.+. .++.+||+++|+||+|+||.++|+++|++|+.+++|+|++|+.|++|++++++|+.|+||.|..+++++++
T Consensus 76 ~~i~~~---~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~ 152 (312)
T cd01489 76 ANIKDP---DFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTF 152 (312)
T ss_pred ccCCCc---cchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcC
Confidence 988752 35678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCChhhHHHHHHHHhhhhhccChhhHhhhcCCcHHHHHHhhhcCchhHHHhHHHHHHHhhhhcccchHHHHH
Q 001356 667 PMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCIT 746 (1093)
Q Consensus 667 p~Ct~~~~P~~~~hci~wA~~~f~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~c~~ 746 (1093)
|+||++++|+.++|||+|||++|+
T Consensus 153 pictI~~~p~~~~hci~~a~~~f~-------------------------------------------------------- 176 (312)
T cd01489 153 PVCTIRSTPSQPIHCIVWAKSLFF-------------------------------------------------------- 176 (312)
T ss_pred CcceecCCCCCCEeehhHHHHHHH--------------------------------------------------------
Confidence 999999999999999999999874
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcchhHHHHHHHHHHHHHHcCCCCCCCCCChh
Q 001356 747 WARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPV 826 (1093)
Q Consensus 747 ~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~ 826 (1093)
+|+++|+++|+||++. ++||+++| +|+|++|+.
T Consensus 177 ----~~~~~f~~~i~~l~~~----------~~~w~~~~-~p~p~~~~~-------------------------------- 209 (312)
T cd01489 177 ----LFNKVFKDDIERLLSM----------EELWKTRK-PPVPLSWKE-------------------------------- 209 (312)
T ss_pred ----HHHHHHHHHHHHHHhh----------hhhhcCCC-CCCCCCCCC--------------------------------
Confidence 5788999999999974 78999977 899887642
Q ss_pred HHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHHHHHHhhhcCCCCCCCCCceeeccCCCCchhHHH
Q 001356 827 KLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKDDDTNFHMDLI 906 (1093)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~FeKDDd~n~hidFv 906 (1093)
++|||||++ ||+||
T Consensus 210 ----------------------------------------------------------------~~fdkDd~~--~~~~v 223 (312)
T cd01489 210 ----------------------------------------------------------------LTFDKDDQD--ALDFV 223 (312)
T ss_pred ----------------------------------------------------------------cCcCCCCHH--HHHHH
Confidence 249999998 99999
Q ss_pred HHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhcCCCCccccccccccccc----ccccccC
Q 001356 907 AGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKLEDYRNTFANLAL----PLFSMAE 982 (1093)
Q Consensus 907 ~aasNLRA~ny~I~~~~~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~~~~rn~f~nla~----p~~~~~e 982 (1093)
+|+|||||+||+||..|++++|+|||||||||||||||||||+++|++|++.+. ++.|||+|+|+.- .++...+
T Consensus 224 ~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 301 (312)
T cd01489 224 AAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGD--KEQCRTVFLNLQPNRRKRLLVPCK 301 (312)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhh--HHHhhhHhhhcccCCCCcEecCCC
Confidence 999999999999999999999999999999999999999999999999999984 6899999998753 2455566
Q ss_pred CCCCCcc
Q 001356 983 PVPPKVF 989 (1093)
Q Consensus 983 P~~~~~~ 989 (1093)
|.+|.+.
T Consensus 302 ~~~~n~~ 308 (312)
T cd01489 302 LDPPNPN 308 (312)
T ss_pred CCCcCCC
Confidence 6655543
No 6
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=1.1e-71 Score=614.39 Aligned_cols=285 Identities=59% Similarity=0.972 Sum_probs=279.9
Q ss_pred hhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHH
Q 001356 90 LHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQ 169 (1093)
Q Consensus 90 ~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~ 169 (1093)
+|||||++||.++|+||++++|||+|+||+|+|+||||+++|||+|+|+|+|.|+.+||+||||++++|||++||+++++
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~ 80 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA 80 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEeecccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeecCCceEEecC
Q 001356 170 KLQELNNAVAISALTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDV 249 (1093)
Q Consensus 170 ~L~eLNp~V~V~~~~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~g~~f~v~d~ 249 (1093)
+|++|||+|+|++++..++++++.+||+||+|.++.+.+.++|++||+++ ||||.+++.|++|++|+|||++|.|.|.
T Consensus 81 ~L~eLNp~V~V~~~~~~~~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~--ipfI~a~~~G~~G~vf~dfg~~f~~~d~ 158 (286)
T cd01491 81 RLAELNPYVPVTVSTGPLTTDELLKFQVVVLTDASLEDQLKINEFCHSPG--IKFISADTRGLFGSIFCDFGDEFTVYDP 158 (286)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHcC--CEEEEEeccccEEEEEecCCCeEEEeCC
Confidence 99999999999999988889999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCcccccccccCC
Q 001356 250 DGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGG 329 (1093)
Q Consensus 250 ~ge~p~~~~i~~I~~~~p~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~y~~gg 329 (1093)
+|+.|.+.+|.+|+++.+++|+++++.+|+++|||+|+|+||+||+++|+++|+++++++||+|+| +||+.|++|.+||
T Consensus 159 ~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~v~~~~~~~f~i-~d~~~~~~y~~gG 237 (286)
T cd01491 159 NGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCEPRKIKVKGPYTFSI-GDTSSFSEYIRGG 237 (286)
T ss_pred CCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCccEEEEECCCCeEEE-CcCcCcCccccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred eEEEeecCeeecccchHHhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhhc
Q 001356 330 IVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNL 409 (1093)
Q Consensus 330 ~~~qvk~p~~~~f~sL~e~l~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~~~~ia~~i~~~~ 409 (1093)
+++|||
T Consensus 238 ~~~qvK-------------------------------------------------------------------------- 243 (286)
T cd01491 238 IVTQVK-------------------------------------------------------------------------- 243 (286)
T ss_pred EEEEEe--------------------------------------------------------------------------
Confidence 999998
Q ss_pred CCccccccCHHHHHHHHhhccCccCchhhhhccchhHHHHHhhccCcccccceeeccCCCCCCCC
Q 001356 410 ADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLPSE 474 (1093)
Q Consensus 410 ~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~lp~~ 474 (1093)
++||||++||++||||||+|||||+||+||||||++|+||..
T Consensus 244 -----------------------~~~~~~~~g~~~~q~~~~~~~~~~~p~~q~~~~~~~~~l~~~ 285 (286)
T cd01491 244 -----------------------LSPMAAFFGGLAAQEVLKACSGKFTPLKQWLYFDALECLPED 285 (286)
T ss_pred -----------------------cccHHHHhhhHHHHHHHHHcCCCCCceeeEEEecHHHhcCCC
Confidence 789999999999999999999999999999999999999963
No 7
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=8.6e-63 Score=531.49 Aligned_cols=176 Identities=48% Similarity=0.807 Sum_probs=168.5
Q ss_pred cEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEEEe
Q 001356 507 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 586 (1093)
Q Consensus 507 ~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~~ 586 (1093)
||+|||+||+|||++|+|+++|| |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-----g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~ 75 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-----GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQ 75 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccceEEEeCCcccccCcCCCCCCCCC
Q 001356 587 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQA 666 (1093)
Q Consensus 587 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~v~v~ip~~t~~y~~~~~p~~~~~ 666 (1093)
.++.++ ..++++|++++|+||+|+||.++|+++|++|+.+++|+|++|+.|++|++++++|+.|+||.|..+|+++.+
T Consensus 76 ~~i~~~--~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~ 153 (234)
T cd01484 76 NKVGPE--QDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNF 153 (234)
T ss_pred ccCChh--hhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCC
Confidence 998653 346678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCChhhHHHHHHHHh
Q 001356 667 PMCTVHSFPHNIDHCLTWARSEF 689 (1093)
Q Consensus 667 p~Ct~~~~P~~~~hci~wA~~~f 689 (1093)
|+||+++||+.|+|||+||+++|
T Consensus 154 p~Cti~~~P~~~~hci~~a~~~~ 176 (234)
T cd01484 154 PMCTIASMPRLPEHCIEWARMLQ 176 (234)
T ss_pred CccccCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999743
No 8
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-57 Score=484.05 Aligned_cols=345 Identities=28% Similarity=0.485 Sum_probs=276.1
Q ss_pred CHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHH
Q 001356 496 GSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAAL 575 (1093)
Q Consensus 496 G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~ 575 (1093)
+.+..+.|.+.+|+||||||+|||++||||++|+ +.+++||||+|+.|||||||||+++|||++||++||+.+.+
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF-----~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~ 105 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGF-----RQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNR 105 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhcc-----ceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHh
Confidence 5678889999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc---c-------cceEeccccCcccceE
Q 001356 576 INPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF---Q-------KPLLESGTLGAKCNTQ 645 (1093)
Q Consensus 576 ~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~---~-------~pli~sgt~G~~G~v~ 645 (1093)
..|...|..|..++.+ ++.+|+++||+||++||++++|+|+|.+.+.. + +|+|++|+.|+|||+.
T Consensus 106 Rvp~~~v~~h~~kIqd-----~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~ar 180 (422)
T KOG2015|consen 106 RVPGCVVVPHRQKIQD-----KPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHAR 180 (422)
T ss_pred hCCCcEEeeeecchhc-----CCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeE
Confidence 9999999999999875 45789999999999999999999999876543 2 6999999999999999
Q ss_pred EEeCCcccccCcCCC--CCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhHhhhcCCcHHHHHHhhhcCchhHH
Q 001356 646 MVIPHLTENYGASRD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQAR 723 (1093)
Q Consensus 646 v~ip~~t~~y~~~~~--p~~~~~p~Ct~~~~P~~~~hci~wA~~~f~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 723 (1093)
+++|+.|.|+.|+.| |++..+|+||+.+.|..|+|||+|++-
T Consensus 181 vI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~l------------------------------------ 224 (422)
T KOG2015|consen 181 VIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKL------------------------------------ 224 (422)
T ss_pred EEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhh------------------------------------
Confidence 999999999999877 778889999999999999999999653
Q ss_pred HhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcchhHHHH
Q 001356 724 DNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFL 803 (1093)
Q Consensus 724 ~~l~~~~~~l~~~~~~~~~~c~~~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~~h~~fi 803 (1093)
++|.+. .|--..++++|+.
T Consensus 225 ---------------------iqwpe~-----------------------------------~~~g~~~~gdd~~----- 243 (422)
T KOG2015|consen 225 ---------------------IQWPEL-----------------------------------NPFGVPLDGDDPE----- 243 (422)
T ss_pred ---------------------hcchhh-----------------------------------CccCCCCCCCCHH-----
Confidence 122210 0101123333333
Q ss_pred HHHHHHHHHHcCCCCCCCCCChhHHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHHHHHHhhhcCC
Q 001356 804 MAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLP 883 (1093)
Q Consensus 804 ~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 883 (1093)
T Consensus 244 -------------------------------------------------------------------------------- 243 (422)
T KOG2015|consen 244 -------------------------------------------------------------------------------- 243 (422)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceeeccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhcCCCCc
Q 001356 884 TGYKMNPIQFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKL 963 (1093)
Q Consensus 884 ~~~~~~~~~FeKDDd~n~hidFv~aasNLRA~ny~I~~~~~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~~~ 963 (1093)
||+||.--+|.||.-|+|+.+++..+.++..+||||+|||||+||+.+|.|++|++...
T Consensus 244 ------------------hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~--- 302 (422)
T KOG2015|consen 244 ------------------HIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTAT--- 302 (422)
T ss_pred ------------------HHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhc---
Confidence 66666666777777788888888889999999999999999999999999999999863
Q ss_pred ccccccccccccccccccCCCCCCccccCC---ccee--EEeEEEeCCCCcHHHHHHHHHHc-CCceeeeecCC-ceeec
Q 001356 964 EDYRNTFANLALPLFSMAEPVPPKVFKHQD---MSWT--VWDRWILRDNPTLRQLLQWLQDK-GLNAYSISYGS-CLLFN 1036 (1093)
Q Consensus 964 ~~~rn~f~nla~p~~~~~eP~~~~~~~~~~---~~~t--~wd~~~v~~~~TL~~li~~~~~~-~l~~~~i~~g~-~~LY~ 1036 (1093)
..|-+-|+|. ...|.....+..... +..+ .-..+++.+..||+++++++.+. ++..+.++.-. ..||.
T Consensus 303 ~~~~~Nym~~-----n~~eG~ytytf~~er~~nC~vCS~~~~~~~ispt~tl~~vl~~ls~~~~lk~p~~tt~~~~~ly~ 377 (422)
T KOG2015|consen 303 DDPLDNYMNY-----NAEEGIYTYTFLLERDKNCPVCSNLVQNYDISPTVTLEDVLNHLSKSFQLKSPALTTAAGRTLYL 377 (422)
T ss_pred chhhhhheee-----ecccceeEEEeeeccCCCCccccCCCcccccCCcccHHHHHHHhhhhhccCCchhhhhhcceEee
Confidence 3344555542 222222111111000 0000 01124455678999999999988 99988886422 78999
Q ss_pred cCCc----chhhcccCcHHHH
Q 001356 1037 SMFP----RHKERMDKKVVDL 1053 (1093)
Q Consensus 1037 ~~~~----~~~~~l~~~l~~l 1053 (1093)
+++| ..++||.++|.||
T Consensus 378 ~~~~~~e~~t~~nl~~~l~~l 398 (422)
T KOG2015|consen 378 SSVPSIEEATRKNLSQSLKEL 398 (422)
T ss_pred cCCcHHHHHhhhhhhhhHHHh
Confidence 9987 4467899999998
No 9
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=2.1e-57 Score=501.64 Aligned_cols=249 Identities=33% Similarity=0.578 Sum_probs=225.7
Q ss_pred cEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEEEe
Q 001356 507 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 586 (1093)
Q Consensus 507 ~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~~ 586 (1093)
||+||||||+|||+||+|+++|| |+|+|+|+|+||.|||||||||+++|||++||++|+++++++||+++|+++.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv-----g~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~ 75 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF-----RNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHF 75 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc--------ccceEeccccCcccceEEEeCCcccccCcC
Q 001356 587 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF--------QKPLLESGTLGAKCNTQMVIPHLTENYGAS 658 (1093)
Q Consensus 587 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~--------~~pli~sgt~G~~G~v~v~ip~~t~~y~~~ 658 (1093)
.++.+ ++.+|++++|+||+|+||+++|+++|+.|... ++|+|++|+.|++|++++++|+.|+||.|.
T Consensus 76 ~~i~~-----~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~ 150 (291)
T cd01488 76 GKIQD-----KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECS 150 (291)
T ss_pred cccCc-----hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccC
Confidence 88874 34689999999999999999999999998664 499999999999999999999999999998
Q ss_pred CC--CCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhHhhhcCCcHHHHHHhhhcCchhHHHhHHHHHHHhhhh
Q 001356 659 RD--PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKE 736 (1093)
Q Consensus 659 ~~--p~~~~~p~Ct~~~~P~~~~hci~wA~~~f~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 736 (1093)
.+ |+++++|+||++++|+.++|||+||+.+
T Consensus 151 ~d~~p~~~~~p~Cti~~~P~~~~hci~~a~~~------------------------------------------------ 182 (291)
T cd01488 151 LDLFPPQVTFPLCTIANTPRLPEHCIEYASLI------------------------------------------------ 182 (291)
T ss_pred CCCCCCCCCCCcccccCCCCCcchheeeeeee------------------------------------------------
Confidence 76 7778899999999999999999998862
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccCCCCCCcccCCCCCCCcccccCCcchhHHHHHHHHHHHHHHcCC
Q 001356 737 RCETFQDCITWARLRFEDYFADRVKQLTFTFPENATTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGI 816 (1093)
Q Consensus 737 ~~~~~~~c~~~a~~~f~~~F~~~i~~Ll~~~p~d~~~~~g~~fws~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i 816 (1093)
.|+..+ |.
T Consensus 183 ------------------------------------------~~~~~~--~~---------------------------- 190 (291)
T cd01488 183 ------------------------------------------QWPKEF--PF---------------------------- 190 (291)
T ss_pred ------------------------------------------eccccc--CC----------------------------
Confidence 011000 00
Q ss_pred CCCCCCCChhHHHHhhhhccCCCCCCCCCccccccccccccCCCCcChHHHHHHHHHHHHHhhhcCCCCCCCCCceeecc
Q 001356 817 PIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQKLEKCQKQLPTGYKMNPIQFEKD 896 (1093)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~FeKD 896 (1093)
..||+|
T Consensus 191 --------------------------------------------------------------------------~~~~~d 196 (291)
T cd01488 191 --------------------------------------------------------------------------VPLDGD 196 (291)
T ss_pred --------------------------------------------------------------------------CcCCCC
Confidence 125666
Q ss_pred CCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhcCCC
Q 001356 897 DDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGH 961 (1093)
Q Consensus 897 Dd~n~hidFv~aasNLRA~ny~I~~~~~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~~~ 961 (1093)
|+. ||+||+..|+.||.+|+|+..+...++.|+||||||||||||+|||+++.|++|++.+..
T Consensus 197 ~~~--~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~ 259 (291)
T cd01488 197 DPE--HIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCY 259 (291)
T ss_pred CHH--HHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccc
Confidence 654 999999999999999999999999999999999999999999999999999999999753
No 10
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=7.2e-56 Score=514.09 Aligned_cols=366 Identities=25% Similarity=0.383 Sum_probs=286.3
Q ss_pred hhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHH
Q 001356 89 DLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASI 168 (1093)
Q Consensus 89 ~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~ 168 (1093)
.|||||+|+||.+||++|++++|||+|+||+|+|++|||+|+|||+|||+|++.|+.+||++|||++++|+|++||++++
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~ 80 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATC 80 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEeecccc------hhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeecCC
Q 001356 169 QKLQELNNAVAISALTTELT------KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGP 242 (1093)
Q Consensus 169 ~~L~eLNp~V~V~~~~~~l~------~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~g~ 242 (1093)
++|++|||+|+++++...++ ++++++||+||+|.++...+..|+++|++++ ||||.+++.|++|+++++++
T Consensus 81 ~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~--iPlI~~~s~G~~G~v~v~~~- 157 (425)
T cd01493 81 ELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSAN--IPLLYVRSYGLYGYIRIQLK- 157 (425)
T ss_pred HHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEecccCEEEEEEEEC-
Confidence 99999999999999887652 5789999999999999999999999999999 99999999999999999998
Q ss_pred ceEEecCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeE----------eecccccCCCC-CeeeeccCCc
Q 001356 243 EFTVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSE----------VHGMTELNDGK-PRKVKNARPY 311 (1093)
Q Consensus 243 ~f~v~d~~ge~p~~~~i~~I~~~~p~lv~~~~~~~h~~~dgd~v~f~e----------v~gm~~ln~~~-~~~i~~~~~~ 311 (1093)
+|+|++++++... ..++|.+|||+|..+.++.+.+ +-|...... .+.|...++|. |...+.+..|
T Consensus 158 ~h~i~et~p~~~~--~DLRL~~P~peL~~~~~~~dl~--~ld~~~h~hvPy~viL~~~l~~w~~~~~g~~p~~~~ek~~f 233 (425)
T cd01493 158 EHTIVESHPDNAL--EDLRLDNPFPELREHADSIDLD--DMDPAEHSHTPYIVILIKYLEKWRSAHNGQLPSTYKEKKEF 233 (425)
T ss_pred CeEEEECCCCCCC--cCcccCCCcHHHHHHHHhcCCc--cCChhhcCCCCHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 6889999988754 4589999999999998765433 322111111 22344444443 2222222222
Q ss_pred cccc------ccCcccccccccCCeEEEeecCeeecccchHHhhcCCCCccccccccCCCcchHHHHHHHHHHHHHH-hC
Q 001356 312 SFSI------DEDTTNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQE-LG 384 (1093)
Q Consensus 312 ~~~i------~~dt~~f~~y~~gg~~~qvk~p~~~~f~sL~e~l~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~-~g 384 (1093)
+-.+ ..|..+|.+-...- .+-...+ .+ -.++++.++++. ....+ .....+|++.+||.+|.++ +|
T Consensus 234 ~~~i~~~~~~~~~eeNf~EA~~~~-~~~~~~~-~i-~~~v~~~~~~~~---~~~~~--~~~~~fwi~~~alk~F~~~~~g 305 (425)
T cd01493 234 RDLVRSLMRSNEDEENFEEAIKAV-NKALNRT-KI-PSSVEEIFNDDR---CENLT--SQSSSFWIMARALKEFVAEENG 305 (425)
T ss_pred HHHHHHhcccCCCccchHHHHHHH-HHhhCCC-CC-cHHHHHHHhchh---cccCC--CCCchHHHHHHHHHHHHHhcCC
Confidence 2111 24555665522100 0000111 01 134555555542 11111 1345699999999999988 99
Q ss_pred CCCCCCC----------------------HHHHHHHHHHHHHHHhhcCCccccccCHHHHHHHHhhcc--------CccC
Q 001356 385 RFPVAGS----------------------EEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGAR--------AVLN 434 (1093)
Q Consensus 385 r~P~~~~----------------------~~D~~~~~~ia~~i~~~~~~~~~~~i~~~li~~~~~~~~--------~el~ 434 (1093)
.+|.++. ..|++++..++.++.+..+.. .+.|+++.|+.||+++. .--|
T Consensus 306 ~lPl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~-~~~I~~~~i~~FCkna~~l~~i~~~~~~~ 384 (425)
T cd01493 306 LLPLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRS-PDSISDKEIKLFCKNAAFLRVIRGRSLEH 384 (425)
T ss_pred CCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCHHHHHHHHhhHHhhhcccCCcccc
Confidence 9998774 578889988888888776543 36899999999999862 2239
Q ss_pred chhhhhccchhHHHHHhhccCcccccceeeccCCCC
Q 001356 435 PMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVES 470 (1093)
Q Consensus 435 PvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~ 470 (1093)
|+|||+||+|||||||++|+||+|++|+|+|||+.+
T Consensus 385 ~~~~~~gg~~aqE~iK~~t~q~vp~~n~~i~dg~~~ 420 (425)
T cd01493 385 NISAFMGGIAAQEVIKLITKQYVPIDNTFIFDGIRS 420 (425)
T ss_pred hHHHHHhHHHHHHHHHHHhccccccCCceEEecccc
Confidence 999999999999999999999999999999999865
No 11
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-53 Score=453.44 Aligned_cols=314 Identities=34% Similarity=0.469 Sum_probs=265.6
Q ss_pred CCchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccch
Q 001356 83 PSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKN 162 (1093)
Q Consensus 83 ~~~~~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~ 162 (1093)
.++.+..+|||||||||.++|++|+++||||+|++|+|+||+|||+|+|||++|++|+..|++.|++.|||+..+++|++
T Consensus 6 lse~E~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~ 85 (331)
T KOG2014|consen 6 LSEQEIALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQT 85 (331)
T ss_pred hhHHHHHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchH
Confidence 45777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeeccc---chhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEee
Q 001356 163 RALASIQKLQELNNAVAISALTTEL---TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCD 239 (1093)
Q Consensus 163 Ka~a~~~~L~eLNp~V~V~~~~~~l---~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d 239 (1093)
||+++.+++++|||.|+|.+.++++ +++||.+||+||.+..+.+...++|++||+++ |+|+.++++|++||+|+|
T Consensus 86 raeas~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~--i~F~a~d~~g~~Gy~F~d 163 (331)
T KOG2014|consen 86 RAEASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRKLN--IAFYAGDCFGLCGYAFAD 163 (331)
T ss_pred HHHHHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHHhcC--ceEEeccccceeeeeeee
Confidence 9999999999999999999998876 56899999999999999999999999999999 999999999999999999
Q ss_pred cCCceEEecCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCc
Q 001356 240 FGPEFTVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDT 319 (1093)
Q Consensus 240 ~g~~f~v~d~~ge~p~~~~i~~I~~~~p~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt 319 (1093)
+++ |.+.+..-... .++ .++..++ |+
T Consensus 164 L~~-h~y~~~~~~~~------~~~-----------------------------------~~k~~k~------------~~ 189 (331)
T KOG2014|consen 164 LQE-HKYLEEKTKVA------KVS-----------------------------------QTKRAKV------------DE 189 (331)
T ss_pred hhh-hhhhhhccccc------ccc-----------------------------------cccceee------------ee
Confidence 975 43332111100 000 0010000 00
Q ss_pred ccccccccCCeEEEeecCeeecccchHHhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Q 001356 320 TNYSAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKII 399 (1093)
Q Consensus 320 ~~f~~y~~gg~~~qvk~p~~~~f~sL~e~l~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~~~ 399 (1093)
+ +.+-....+.|+|++|+|+.++. ...-.+..|...+|++++.+..|.+.+||.|+.-..+|.+.++
T Consensus 190 ~-----------~~~~vk~~~~~~~~~Eal~~~~~--~k~k~~~rr~~~~~~ll~v~l~f~~s~~r~pg~~~~~d~erl~ 256 (331)
T KOG2014|consen 190 T-----------ETEWVKRKVVFPSVKEALSVDWT--KKEKRKPRRTKKLYFLLPVLLKFRTSEGRDPGETSEEDLERLL 256 (331)
T ss_pred c-----------cceehhhhhcccCHHHHHhcccc--hhhhhhhhccCcceehHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 0 00122357889999999997731 1223345678889999999999999999999977799999999
Q ss_pred HHHHHHHhhcCCccccccCHHHHHHHHhhccCccCchhhhhccchhHHHHHhhccCcccccceeeccCCCCC
Q 001356 400 SLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESL 471 (1093)
Q Consensus 400 ~ia~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~l 471 (1093)
.|.+++++.. .-++++++ +|..+...+++|+||++|||+||||||+||++-.|++|||||||+++.
T Consensus 257 ~I~~ell~s~-----~i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~Nff~fdg~~g~ 322 (331)
T KOG2014|consen 257 QIRNELLESE-----TIIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLNNFFIFDGETGK 322 (331)
T ss_pred HHHHhhcccc-----ccCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcccceEEeecccCc
Confidence 9999988732 23456666 888999999999999999999999999999999999999999999884
No 12
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-53 Score=466.89 Aligned_cols=375 Identities=24% Similarity=0.388 Sum_probs=293.8
Q ss_pred hhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHH
Q 001356 87 DEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALA 166 (1093)
Q Consensus 87 ~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a 166 (1093)
.+.+||||+|+||.+||..|..++||++|+|++|+|++|||+|+|||+||++|+..|+.+|++.|||+..+++|++||++
T Consensus 6 ~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a 85 (523)
T KOG2016|consen 6 PKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEA 85 (523)
T ss_pred hhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEeeccc------chhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeec
Q 001356 167 SIQKLQELNNAVAISALTTEL------TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDF 240 (1093)
Q Consensus 167 ~~~~L~eLNp~V~V~~~~~~l------~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~ 240 (1093)
+.+.|++|||.|..+...+.. +++++++|++||.+..+.+...++.++||.++ ||++.+.++|+.|++++..
T Consensus 86 ~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~--vpll~~rs~Gl~G~iRI~i 163 (523)
T KOG2016|consen 86 TLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREAN--VPLLLTRSYGLAGTIRISI 163 (523)
T ss_pred HHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcC--CceEEEeeecceEEEEEEe
Confidence 999999999999998877653 45799999999999999999999999999999 9999999999999999998
Q ss_pred CCceEEecCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEee----------ccc-ccCCCCCeeeeccC
Q 001356 241 GPEFTVFDVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVH----------GMT-ELNDGKPRKVKNAR 309 (1093)
Q Consensus 241 g~~f~v~d~~ge~p~~~~i~~I~~~~p~lv~~~~~~~h~~~dgd~v~f~ev~----------gm~-~ln~~~~~~i~~~~ 309 (1093)
. +|++++.+++.|..+ +++.+|||+|.+++++.+++..+- -.+++++ -|. +.|+.-|...+.+.
T Consensus 164 k-EH~iieshPD~~~~D--LRL~nPwpeLi~~v~s~dLd~m~~--a~~shiPyivll~K~l~~w~~~~n~~~p~t~~ekk 238 (523)
T KOG2016|consen 164 K-EHTIIESHPDNPLDD--LRLDNPWPELIEYVDSTDLDVMDP--AAHSHIPYIVLLVKYLEKWAKQHNGNLPSTYDEKK 238 (523)
T ss_pred e-eccccccCCCCcccc--cccCCCcHHHHHHHhhcCccccch--hhhcCCCcHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 6 599999999998766 899999999999998765553332 1111111 010 01111111100000
Q ss_pred -------------------------------------------------------Ccc--------cc------------
Q 001356 310 -------------------------------------------------------PYS--------FS------------ 314 (1093)
Q Consensus 310 -------------------------------------------------------~~~--------~~------------ 314 (1093)
+|- |.
T Consensus 239 ~fkd~i~~~~~~~DeeNyeEA~~a~~~Af~~~~i~ssv~dil~d~~c~~~~~~s~~FWim~~aLk~Fv~~e~~g~lPL~G 318 (523)
T KOG2016|consen 239 EFKDLIRSEMGKADEENYEEAIKAVNKAFAPTQIPSSVKDILHDDRCAQIGKDSSDFWIMAAALKEFVLKEEGGFLPLRG 318 (523)
T ss_pred HHHHHHHhcCCCCccccHHHHHHHHHHHhcccCCchhHHHHhcChHHHHhcCCCcHHHHHHHHHHHHHcccCCCccCCCC
Confidence 000 00
Q ss_pred -cc---cCcccccc----ccc--------------------CCeEEEeec------------CeeecccchHHhhcCCCC
Q 001356 315 -ID---EDTTNYSA----YEK--------------------GGIVTQVKQ------------PKIINFKPLREALKDPGD 354 (1093)
Q Consensus 315 -i~---~dt~~f~~----y~~--------------------gg~~~qvk~------------p~~~~f~sL~e~l~~p~~ 354 (1093)
++ .+|.+|.. |.. |.....+.. -+++.|+++++..+ |..
T Consensus 319 tlPDM~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~-~s~ 397 (523)
T KOG2016|consen 319 TLPDMTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYE-KSI 397 (523)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhc-ccc
Confidence 11 12222221 100 111111111 16788888888877 311
Q ss_pred ---ccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHhhcCCccccccCHHHHHHHHhhcc
Q 001356 355 ---FLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGS-EEDAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGAR 430 (1093)
Q Consensus 355 ---~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~-~~D~~~~~~ia~~i~~~~~~~~~~~i~~~li~~~~~~~~ 430 (1093)
...++.........+|+++||+++|.+++|++|+... ++|+..+..++..+..+++... ..+.++.+.+|||+++
T Consensus 398 ~~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG~~~v~~D~~~lks~a~~~lse~g~~~-~~v~d~~i~E~cR~ga 476 (523)
T KOG2016|consen 398 TELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPGEGPVEIDITKLKSIAASLLSELGLDG-NAVTDDAIHEICRFGA 476 (523)
T ss_pred hhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHHHhccCc-ccCcHHHHHHHHhcCC
Confidence 0111222223456799999999999999999999432 6899999999999988887532 4688999999999999
Q ss_pred CccCchhhhhccchhHHHHHhhccCcccccceeeccCCCC
Q 001356 431 AVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVES 470 (1093)
Q Consensus 431 ~el~PvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~ 470 (1093)
+|+|.|+||+||+|||||||++|+||+||+|+|+|||+..
T Consensus 477 aElH~VsAfiGGiaaQEvIKLiTkQyvPidNTFIfnGi~~ 516 (523)
T KOG2016|consen 477 AELHVVSAFIGGIAAQEVIKLITKQYVPIDNTFIFNGITQ 516 (523)
T ss_pred chhHHHHHHHhhHHHHHHHHHHHhceecccceeEeccccc
Confidence 9999999999999999999999999999999999999865
No 13
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=1.4e-37 Score=329.31 Aligned_cols=149 Identities=40% Similarity=0.683 Sum_probs=142.5
Q ss_pred hhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHH
Q 001356 89 DLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASI 168 (1093)
Q Consensus 89 ~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~ 168 (1093)
++||||+++||.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||++++|+|++||++++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~ 81 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASL 81 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEeecccc---hhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEee
Q 001356 169 QKLQELNNAVAISALTTELT---KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCD 239 (1093)
Q Consensus 169 ~~L~eLNp~V~V~~~~~~l~---~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d 239 (1093)
++|+++||+++|+.+...++ ++++++||+||+|.++.+.+..+|++||+++ +|||.+++.|++|++|+|
T Consensus 82 ~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~--ip~i~~~~~G~~G~v~~d 153 (197)
T cd01492 82 ERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLG--VKFYATGVHGLFGFVFAD 153 (197)
T ss_pred HHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEecCCEEEEEEe
Confidence 99999999999999887664 3689999999999999999999999999999 999999999999988753
No 14
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=9.2e-37 Score=323.41 Aligned_cols=149 Identities=41% Similarity=0.643 Sum_probs=141.5
Q ss_pred hhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceeccc--CcccchHHHHH
Q 001356 90 LHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSE--DDVGKNRALAS 167 (1093)
Q Consensus 90 ~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~--~diGk~Ka~a~ 167 (1093)
+||||+++||.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+|++||||+++ +|+|++||+++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~ 80 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAAS 80 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHhCCCcEEEEeecccc------hhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeec
Q 001356 168 IQKLQELNNAVAISALTTELT------KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDF 240 (1093)
Q Consensus 168 ~~~L~eLNp~V~V~~~~~~l~------~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~ 240 (1093)
+++|+++||+++|+++...+. ++++++||+||+|.++.+.+..+|++|++++ +|||.+++.|++|++|+|+
T Consensus 81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~--ip~i~~~~~G~~G~v~~~~ 157 (198)
T cd01485 81 YEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHH--IPFISCATYGLIGYAFFDF 157 (198)
T ss_pred HHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeecCEEEEEEch
Confidence 999999999999999877653 3688999999999999999999999999999 9999999999999987543
No 15
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=3.2e-36 Score=330.92 Aligned_cols=182 Identities=26% Similarity=0.342 Sum_probs=166.3
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcccc
Q 001356 484 LNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 563 (1093)
Q Consensus 484 ~~~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~ 563 (1093)
..+||+||+.++|.++|++|++++|+||||||+||+++++||++|| |+|+|+|+|.||.||||||++|+.+|||+
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGV-----G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~ 80 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGI-----GKFTIADFDVFELRNFNRQAGAMMSTLGR 80 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCC-----CeEEEEeCCCcchhccccccCcChhHCCC
Confidence 4589999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCH--HHHHHHhhcccccccceEeccccCcc
Q 001356 564 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNV--NARLYIDQRCLYFQKPLLESGTLGAK 641 (1093)
Q Consensus 564 ~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~--~aR~~i~~~c~~~~~pli~sgt~G~~ 641 (1093)
+|+++++++++++||+++|+++..++.+++. ++|++++|+||||+||+ .+|.++|+.|+.+++|+|.+++.|+.
T Consensus 81 ~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~----~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~ 156 (287)
T PRK08223 81 PKAEVLAEMVRDINPELEIRAFPEGIGKENA----DAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMG 156 (287)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEecccCccCH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCe
Confidence 9999999999999999999999999986543 57889999999999996 89999999999999999999999999
Q ss_pred cceEEEeCCcccccCcC-CC---CCC---------CCCCcccccCCC
Q 001356 642 CNTQMVIPHLTENYGAS-RD---PPE---------KQAPMCTVHSFP 675 (1093)
Q Consensus 642 G~v~v~ip~~t~~y~~~-~~---p~~---------~~~p~Ct~~~~P 675 (1093)
|++.++.|+ +.||.|- .. |++ ...|.|....+.
T Consensus 157 gqv~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl 202 (287)
T PRK08223 157 TALLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYL 202 (287)
T ss_pred EEEEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCcc
Confidence 999999987 7999983 32 332 346778766655
No 16
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=3.8e-36 Score=320.00 Aligned_cols=176 Identities=28% Similarity=0.479 Sum_probs=161.2
Q ss_pred cchhhhhc--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccc
Q 001356 487 RYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 564 (1093)
Q Consensus 487 Rydrqi~l--~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~ 564 (1093)
|||||+++ ||.+.|++|++++|+|||+||+||+++++|+++|+ |+|+|+|.|.||.+||+|||||+++|+|++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv-----~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~ 75 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGV-----GTIVIVDDDHVDLSNLQRQILFTEEDVGRP 75 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEecCCEEcccchhhhhccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccce
Q 001356 565 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 644 (1093)
Q Consensus 565 Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~v 644 (1093)
|+++++++++++||+++++++...+.+++ + .++++++|+||+|+||.++|.+++++|+++++|+|.+|+.|+.|++
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~~~--~--~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~ 151 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTAEN--L--ELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQL 151 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCHHH--H--HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEE
Confidence 99999999999999999999998886532 1 4678999999999999999999999999999999999999999999
Q ss_pred EEEeCC-cccccCcCCCCCCCCCCcccc
Q 001356 645 QMVIPH-LTENYGASRDPPEKQAPMCTV 671 (1093)
Q Consensus 645 ~v~ip~-~t~~y~~~~~p~~~~~p~Ct~ 671 (1093)
.++.|+ .++||.|......+..+.|..
T Consensus 152 ~~~~p~~~~~c~~c~~~~~~~~~~~~~~ 179 (202)
T TIGR02356 152 MVFDPGGEGPCLRCLFPDIADTGPSCAT 179 (202)
T ss_pred EEEeCCCCCCChhhcCCCCcccCCCCcc
Confidence 999998 799999954332333455643
No 17
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=3.5e-35 Score=318.65 Aligned_cols=164 Identities=37% Similarity=0.572 Sum_probs=156.3
Q ss_pred cchhhhhc--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccc
Q 001356 487 RYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 564 (1093)
Q Consensus 487 Rydrqi~l--~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~ 564 (1093)
||+||+++ ||.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.||.+||+|||||+++|||++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 75 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGV-----GKLGLVDDDVVELSNLQRQILHTEADVGQP 75 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEEcCcccccccccChhhCCCh
Confidence 89999999 99999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccce
Q 001356 565 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 644 (1093)
Q Consensus 565 Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~v 644 (1093)
|+++++++++++||+++|+++..++..++ + .++++++|+||+|+||+++|.+++++|+++++|+|++|+.|..|++
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i~~~~--~--~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v 151 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERLDAEN--A--EELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQV 151 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEecceeCHHH--H--HHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEE
Confidence 99999999999999999999998885422 1 4678999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccCcCC
Q 001356 645 QMVIPHLTENYGASR 659 (1093)
Q Consensus 645 ~v~ip~~t~~y~~~~ 659 (1093)
.+++|+.+.||.|..
T Consensus 152 ~~~~p~~~~c~~c~~ 166 (228)
T cd00757 152 TVFIPGEGPCYRCLF 166 (228)
T ss_pred EEECCCCCCCccccC
Confidence 999999999999953
No 18
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=2.1e-35 Score=322.93 Aligned_cols=165 Identities=34% Similarity=0.500 Sum_probs=156.1
Q ss_pred Ccchhhhhc--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcccc
Q 001356 486 SRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 563 (1093)
Q Consensus 486 ~Rydrqi~l--~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~ 563 (1093)
+||+||+++ ||.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|+|.||.|||+||+||+++|||+
T Consensus 11 ~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~ 85 (245)
T PRK05690 11 LRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGV-----GTLTLVDFDTVSLSNLQRQVLHDDATIGQ 85 (245)
T ss_pred HHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCEECcchhhhhhcCChhhCCC
Confidence 799999987 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccc
Q 001356 564 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 643 (1093)
Q Consensus 564 ~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~ 643 (1093)
+|+++++++|+++||+++|+++..++.+++. +++++++|+||+|+||+++|.+++++|+.+++|+|.+++.|+.|+
T Consensus 86 ~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~----~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~ 161 (245)
T PRK05690 86 PKVESARAALARINPHIAIETINARLDDDEL----AALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQ 161 (245)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCce
Confidence 9999999999999999999999988875321 468899999999999999999999999999999999999999999
Q ss_pred eEEEeCCc-ccccCcCC
Q 001356 644 TQMVIPHL-TENYGASR 659 (1093)
Q Consensus 644 v~v~ip~~-t~~y~~~~ 659 (1093)
+.++.|+. ++||.|..
T Consensus 162 v~~~~~~~~~~c~~c~~ 178 (245)
T PRK05690 162 VTVFTYQDDEPCYRCLS 178 (245)
T ss_pred EEEEecCCCCceeeecc
Confidence 99999875 79999853
No 19
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=4.5e-35 Score=340.27 Aligned_cols=176 Identities=28% Similarity=0.456 Sum_probs=162.2
Q ss_pred Ccchhhhhc--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcccc
Q 001356 486 SRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 563 (1093)
Q Consensus 486 ~Rydrqi~l--~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~ 563 (1093)
+||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|+||.|||||||||++.|||+
T Consensus 17 ~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gv-----g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~ 91 (390)
T PRK07411 17 ERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGI-----GRIGIVDFDVVDSSNLQRQVIHGTSWVGK 91 (390)
T ss_pred HHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEecccccCcCcccChHHCCC
Confidence 799999999 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccc
Q 001356 564 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 643 (1093)
Q Consensus 564 ~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~ 643 (1093)
+|+++++++|+++||+++|+++..++.+++. .++++++|+||+|+||.++|.++|+.|+.+++|+|.+++.|+.|+
T Consensus 92 ~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~ 167 (390)
T PRK07411 92 PKIESAKNRILEINPYCQVDLYETRLSSENA----LDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQ 167 (390)
T ss_pred cHHHHHHHHHHHHCCCCeEEEEecccCHHhH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEE
Confidence 9999999999999999999999998886432 468899999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccccCcCC-C-CCCCCCCccc
Q 001356 644 TQMVIPHLTENYGASR-D-PPEKQAPMCT 670 (1093)
Q Consensus 644 v~v~ip~~t~~y~~~~-~-p~~~~~p~Ct 670 (1093)
+.++.|+.++||.|.. . |+....|.|.
T Consensus 168 ~~v~~~~~~~c~~c~~~~~~~~~~~~~c~ 196 (390)
T PRK07411 168 ATVFNYEGGPNYRDLYPEPPPPGMVPSCA 196 (390)
T ss_pred EEEECCCCCCChHHhcCCCCCcccCCCCc
Confidence 9988887899999953 3 2333345564
No 20
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=7.8e-35 Score=315.89 Aligned_cols=164 Identities=32% Similarity=0.465 Sum_probs=156.2
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcccc-c
Q 001356 486 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ-A 564 (1093)
Q Consensus 486 ~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~-~ 564 (1093)
+||+||+++||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.||.|||+||++|+++|+|+ +
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~ 82 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGV-----GRILLIDEQTPELSNLNRQILHWEEDLGKNP 82 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCccChhhhccccccChhhcCchH
Confidence 79999999999999999999999999999999999999999999 99999999999999999999999999999 5
Q ss_pred hHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccce
Q 001356 565 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 644 (1093)
Q Consensus 565 Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~v 644 (1093)
|+++++++++++||+++|+++...+.+++ + +++++++|+||+|+||.++|.+++++|+++++|+|++|+.|+.|++
T Consensus 83 k~~~a~~~l~~~np~v~v~~~~~~~~~~~--~--~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v 158 (231)
T PRK08328 83 KPLSAKWKLERFNSDIKIETFVGRLSEEN--I--DEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQV 158 (231)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeccCCHHH--H--HHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEE
Confidence 99999999999999999999998876533 2 4688999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccCcC
Q 001356 645 QMVIPHLTENYGAS 658 (1093)
Q Consensus 645 ~v~ip~~t~~y~~~ 658 (1093)
.+++|+.|+||.|.
T Consensus 159 ~~~~p~~~~c~~~~ 172 (231)
T PRK08328 159 TTIVPGKTKRLREI 172 (231)
T ss_pred EEECCCCCCCHHHh
Confidence 99999999999874
No 21
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.7e-34 Score=331.88 Aligned_cols=177 Identities=29% Similarity=0.395 Sum_probs=163.4
Q ss_pred Ccchhhhhc--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcccc
Q 001356 486 SRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 563 (1093)
Q Consensus 486 ~Rydrqi~l--~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~ 563 (1093)
+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+|||||++.|||+
T Consensus 7 ~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~ 81 (355)
T PRK05597 7 ARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGV-----GHITIIDDDTVDLSNLHRQVIHSTAGVGQ 81 (355)
T ss_pred hHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcccccccCcccChhHCCC
Confidence 799999999 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccc
Q 001356 564 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 643 (1093)
Q Consensus 564 ~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~ 643 (1093)
+|+++++++|+++||+++|+++..++.+++. .++++++|+||+|+||+.+|.++|..|+++++|+|.+++.|+.|+
T Consensus 82 ~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~----~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~ 157 (355)
T PRK05597 82 PKAESAREAMLALNPDVKVTVSVRRLTWSNA----LDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQ 157 (355)
T ss_pred hHHHHHHHHHHHHCCCcEEEEEEeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEE
Confidence 9999999999999999999999988875431 467899999999999999999999999999999999999999999
Q ss_pred eEEEeCCcccccCcC-CC-CCCCCCCcccc
Q 001356 644 TQMVIPHLTENYGAS-RD-PPEKQAPMCTV 671 (1093)
Q Consensus 644 v~v~ip~~t~~y~~~-~~-p~~~~~p~Ct~ 671 (1093)
+.++.|+.++||.|. +. |+....|.|..
T Consensus 158 v~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 187 (355)
T PRK05597 158 LSVFHAGHGPIYEDLFPTPPPPGSVPSCSQ 187 (355)
T ss_pred EEEEcCCCCCCHHHhCCCCCCccCCCCccc
Confidence 999888889999994 33 33345667754
No 22
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=4.1e-34 Score=311.44 Aligned_cols=166 Identities=30% Similarity=0.455 Sum_probs=153.4
Q ss_pred cCcchhhhhcc--CHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccc
Q 001356 485 NSRYDAQISVF--GSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 562 (1093)
Q Consensus 485 ~~Rydrqi~l~--G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG 562 (1093)
.+||+||+++| |.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|.|.||.|||+||+||++.|||
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~RQ~l~~~~diG 76 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGV-----GNLTLLDFDTVSLSNLQRQVLHSDANIG 76 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCcccccCcccceeeeHhhCC
Confidence 37999999996 5899999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCccc
Q 001356 563 QAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKC 642 (1093)
Q Consensus 563 ~~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G 642 (1093)
++|+++++++++++||+++|+++..++.+++. .++++++|+||+|+||+.+|.+++++|+++++|+|.++..|+.|
T Consensus 77 ~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~----~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G 152 (240)
T TIGR02355 77 QPKVESAKDALTQINPHIAINPINAKLDDAEL----AALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEG 152 (240)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEe
Confidence 99999999999999999999999988875321 46889999999999999999999999999999999999999999
Q ss_pred ceEEEe-CCcccccCcCC
Q 001356 643 NTQMVI-PHLTENYGASR 659 (1093)
Q Consensus 643 ~v~v~i-p~~t~~y~~~~ 659 (1093)
++.++. +..++||.|..
T Consensus 153 ~v~~~~~~~~~~c~~C~~ 170 (240)
T TIGR02355 153 QVSVFTYQDGEPCYRCLS 170 (240)
T ss_pred EEEEEecCCCCCcccccc
Confidence 988765 44578998854
No 23
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=4.9e-34 Score=302.25 Aligned_cols=152 Identities=26% Similarity=0.418 Sum_probs=144.9
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccch
Q 001356 486 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 565 (1093)
Q Consensus 486 ~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~K 565 (1093)
.|||||+++||.++|++|++++|+||||||+|||++|+|+++|| |+|+|+|+|.|+.+||+|||||+++|+|++|
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GV-----g~i~lvD~d~ve~snL~rqfl~~~~diG~~K 76 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGI-----GSLTILDDRTVTEEDLGAQFLIPAEDLGQNR 76 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCC-----CEEEEEECCcccHhhCCCCccccHHHcCchH
Confidence 59999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccceE
Q 001356 566 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQ 645 (1093)
Q Consensus 566 a~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~v~ 645 (1093)
+++++++|+++||+++|+++...+.+ .+++||+++|+||+|+|+.++|.++++.|+++++|++.+|+.|+.|++.
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~~-----~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~ 151 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDISE-----KPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVF 151 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCccc-----cHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEE
Confidence 99999999999999999999887763 2357899999999999999999999999999999999999999999876
Q ss_pred EE
Q 001356 646 MV 647 (1093)
Q Consensus 646 v~ 647 (1093)
..
T Consensus 152 ~d 153 (197)
T cd01492 152 AD 153 (197)
T ss_pred Ee
Confidence 53
No 24
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=4.5e-32 Score=315.53 Aligned_cols=186 Identities=22% Similarity=0.358 Sum_probs=166.6
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccch
Q 001356 486 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 565 (1093)
Q Consensus 486 ~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~K 565 (1093)
.|||||+++||.++|++|++++|+||||||+|||++|||+++|| |+|+|+|+|.|+.+||+|||+++.+|||++|
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GI-----g~~tIvD~~~V~~sDL~~nFfl~~~diGk~k 75 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGI-----GSFTIVDGSKVDEEDLGNNFFLDASSLGKSR 75 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCC-----CeEEEECCCcCchhhccccccCChhhcCcHH
Confidence 49999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccceE
Q 001356 566 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQ 645 (1093)
Q Consensus 566 a~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~v~ 645 (1093)
|+++++.|+++||+++++.+...+..-. ..+++||+++|+||.|.++...+..++++|+..++|+|.+++.|+.|+++
T Consensus 76 A~~~~~~L~eLNp~V~i~~~~e~~~~ll--~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~ 153 (425)
T cd01493 76 AEATCELLQELNPDVNGSAVEESPEALL--DNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIR 153 (425)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccchhh--hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEE
Confidence 9999999999999999999987654211 12368999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccccCcCCCCCCCCCCcccccCCCCChhhH
Q 001356 646 MVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHC 681 (1093)
Q Consensus 646 v~ip~~t~~y~~~~~p~~~~~p~Ct~~~~P~~~~hc 681 (1093)
+.+|.. ....+ .|......+...+.||...+|+
T Consensus 154 v~~~~h-~i~et--~p~~~~~DLRL~~P~peL~~~~ 186 (425)
T cd01493 154 IQLKEH-TIVES--HPDNALEDLRLDNPFPELREHA 186 (425)
T ss_pred EEECCe-EEEEC--CCCCCCcCcccCCCcHHHHHHH
Confidence 999842 24443 3444556778889999988865
No 25
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=2.2e-33 Score=326.97 Aligned_cols=164 Identities=27% Similarity=0.469 Sum_probs=155.2
Q ss_pred Ccchhhhhc--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcccc
Q 001356 486 SRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 563 (1093)
Q Consensus 486 ~Rydrqi~l--~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~ 563 (1093)
+||+||+.+ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.||.|||+|||||+++|||+
T Consensus 21 ~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~l~~~~diG~ 95 (392)
T PRK07878 21 ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGV-----GTLGIVEFDVVDESNLQRQVIHGQSDVGR 95 (392)
T ss_pred HHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEecCcccccccccChhcCCC
Confidence 899999998 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccc
Q 001356 564 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 643 (1093)
Q Consensus 564 ~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~ 643 (1093)
+|+++++++|+++||+++|+++..++..++ ..++++++|+||+|+||+.+|.++|++|+.+++|+|.+++.|+.|+
T Consensus 96 ~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~----~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~ 171 (392)
T PRK07878 96 SKAQSARDSIVEINPLVNVRLHEFRLDPSN----AVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQ 171 (392)
T ss_pred hHHHHHHHHHHHhCCCcEEEEEeccCChhH----HHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 999999999999999999999998887543 2568899999999999999999999999999999999999999999
Q ss_pred eEEEeCC----cccccCcC
Q 001356 644 TQMVIPH----LTENYGAS 658 (1093)
Q Consensus 644 v~v~ip~----~t~~y~~~ 658 (1093)
+.++.+. .++||.|.
T Consensus 172 v~~~~~~~~~~~~~c~~c~ 190 (392)
T PRK07878 172 ASVFWEDAPDGLGLNYRDL 190 (392)
T ss_pred EEEEecCCCCCCCCeeeee
Confidence 9988743 68899994
No 26
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=1.6e-33 Score=311.53 Aligned_cols=181 Identities=24% Similarity=0.330 Sum_probs=162.7
Q ss_pred cchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchH
Q 001356 487 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS 566 (1093)
Q Consensus 487 Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka 566 (1093)
.|+||+++||.++|++|++++|+|||+||+|||+||||+++|| |+|+|+|.|.++.+||+|||+|+++|||++||
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGV-----g~itI~D~d~ve~snL~rqf~~~~~dIGk~Ka 75 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGV-----KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRA 75 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCC-----CeEEEEcCCccchhhcccCccCChHHhCHHHH
Confidence 4999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccceEE
Q 001356 567 TVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQM 646 (1093)
Q Consensus 567 ~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~v~v 646 (1093)
++++++|+++||+++|+++...+ +.+++.++|+||+|.|+.++|.++|++|++.++|+|.+++.|+.|++.+
T Consensus 76 ea~~~~L~eLNp~V~V~~~~~~~--------~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~ 147 (286)
T cd01491 76 EASQARLAELNPYVPVTVSTGPL--------TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFC 147 (286)
T ss_pred HHHHHHHHHHCCCCEEEEEeccC--------CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEe
Confidence 99999999999999999998653 3467899999999999999999999999999999999999999999887
Q ss_pred EeCCcccccCcC-CC-CCCCCCCcccccCCCCChhhHHH
Q 001356 647 VIPHLTENYGAS-RD-PPEKQAPMCTVHSFPHNIDHCLT 683 (1093)
Q Consensus 647 ~ip~~t~~y~~~-~~-p~~~~~p~Ct~~~~P~~~~hci~ 683 (1093)
..+ +||.|. .+ ++.++++.|.+.+-+....||+.
T Consensus 148 dfg---~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~ 183 (286)
T cd01491 148 DFG---DEFTVYDPNGEEPKSGMISSISKDNPGVVTCLD 183 (286)
T ss_pred cCC---CeEEEeCCCCCcCCccceeeeecCCceEEEEEC
Confidence 554 566663 11 23456788888776777778853
No 27
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=1.5e-33 Score=324.56 Aligned_cols=164 Identities=27% Similarity=0.457 Sum_probs=154.9
Q ss_pred Ccchhhhhc--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcccc
Q 001356 486 SRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 563 (1093)
Q Consensus 486 ~Rydrqi~l--~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~ 563 (1093)
+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||+++|||+
T Consensus 20 ~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gv-----g~i~ivD~D~ve~sNL~RQ~l~~~~diG~ 94 (370)
T PRK05600 20 RRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGV-----GTITLIDDDTVDVSNIHRQILFGASDVGR 94 (370)
T ss_pred HHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEeCCEEccccccccccCChhHCCC
Confidence 799999999 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccc
Q 001356 564 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 643 (1093)
Q Consensus 564 ~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~ 643 (1093)
+|+++++++++++||+++|+++..++.+++. .++++++|+||+|+||+++|.++|+.|+.+++|+|.+++.|+.|+
T Consensus 95 ~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~----~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~ 170 (370)
T PRK05600 95 PKVEVAAERLKEIQPDIRVNALRERLTAENA----VELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGE 170 (370)
T ss_pred HHHHHHHHHHHHHCCCCeeEEeeeecCHHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEE
Confidence 9999999999999999999999998875432 468899999999999999999999999999999999999999999
Q ss_pred eEEEeCCc---ccccCcC
Q 001356 644 TQMVIPHL---TENYGAS 658 (1093)
Q Consensus 644 v~v~ip~~---t~~y~~~ 658 (1093)
+.++.|.. +.||.|.
T Consensus 171 v~v~~~~~~~~~~~~~~l 188 (370)
T PRK05600 171 LAVFNSGPDHRGVGLRDL 188 (370)
T ss_pred EEEEecCCCCCCCCcHhh
Confidence 99887753 5788873
No 28
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=2.1e-33 Score=297.76 Aligned_cols=154 Identities=24% Similarity=0.442 Sum_probs=144.2
Q ss_pred cchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCccccccc--Cccccc
Q 001356 487 RYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRD--WNIGQA 564 (1093)
Q Consensus 487 Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~--~dvG~~ 564 (1093)
|||||+++||.++|++|++++|+||||||+|||++|||+++|| |+|+|+|+|.|+.+||+|||||++ .|+|++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GV-----g~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~ 75 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGI-----DSITIVDHRLVSTEDLGSNFFLDAEVSNSGMN 75 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEECCcCChhcCcccEecccchhhcCch
Confidence 7999999999999999999999999999999999999999999 999999999999999999999998 899999
Q ss_pred hHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccce
Q 001356 565 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNT 644 (1093)
Q Consensus 565 Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~v 644 (1093)
|+++++++|+++||+++|+++...+....+ ..++||+++|+||+|.|+..+|.+++++|+++++|+|.+++.|+.|++
T Consensus 76 Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~--~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v 153 (198)
T cd01485 76 RAAASYEFLQELNPNVKLSIVEEDSLSNDS--NIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYA 153 (198)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccccchh--hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEE
Confidence 999999999999999999999887652111 236789999999999999999999999999999999999999999998
Q ss_pred EEE
Q 001356 645 QMV 647 (1093)
Q Consensus 645 ~v~ 647 (1093)
.+.
T Consensus 154 ~~~ 156 (198)
T cd01485 154 FFD 156 (198)
T ss_pred EEc
Confidence 754
No 29
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=4.5e-33 Score=311.46 Aligned_cols=279 Identities=19% Similarity=0.307 Sum_probs=210.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecccch
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTK 189 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l~~ 189 (1093)
+|||+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+|||+++++|||++||++++++|+++||+|+|+++...+++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999877653
Q ss_pred -----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeecCCceEEec-CCCCCCccceecccc
Q 001356 190 -----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFD-VDGEEPHTGIIASIS 263 (1093)
Q Consensus 190 -----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~g~~f~v~d-~~ge~p~~~~i~~I~ 263 (1093)
+++++||+||+|.|+.+.+..+|++|+.++ +|||.+++.|++|++++++|+.+.|++ ..++.|.+..+..|.
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~--ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pictI~ 158 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAAD--VPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIR 158 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCC--CCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcceec
Confidence 789999999999999999999999999999 999999999999999999998887777 567777788888898
Q ss_pred CCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCcccccccccCCeEEEeecCeeeccc
Q 001356 264 NDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFK 343 (1093)
Q Consensus 264 ~~~p~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~y~~gg~~~qvk~p~~~~f~ 343 (1093)
+.....++|++..++-|+ .|..+ |...|. .. +.....|+.-|.|..+.|.
T Consensus 159 ~~p~~~~hci~~a~~~f~-----~~~~~-------------------f~~~i~----~l--~~~~~~w~~~~~p~p~~~~ 208 (312)
T cd01489 159 STPSQPIHCIVWAKSLFF-----LFNKV-------------------FKDDIE----RL--LSMEELWKTRKPPVPLSWK 208 (312)
T ss_pred CCCCCCEeehhHHHHHHH-----HHHHH-------------------HHHHHH----HH--HhhhhhhcCCCCCCCCCCC
Confidence 877888888876554332 00000 000000 00 0000001111111111111
Q ss_pred chHHhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhhcCCccccccCHHHHH
Q 001356 344 PLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERVEEIDHKLLC 423 (1093)
Q Consensus 344 sL~e~l~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~~~~ia~~i~~~~~~~~~~~i~~~li~ 423 (1093)
. ..|. ..|.++.+-+.+.++.....++ +...+...++
T Consensus 209 ~--------------------------------~~fd--------kDd~~~~~~v~~~a~lRa~~f~---I~~~~~~~~k 245 (312)
T cd01489 209 E--------------------------------LTFD--------KDDQDALDFVAAAANLRSHVFG---IPMKSRFDIK 245 (312)
T ss_pred C--------------------------------cCcC--------CCCHHHHHHHHHHHHHHHHHcC---CCCCCHHHHH
Confidence 1 0010 0123344444555555555554 3456677888
Q ss_pred HHHhhccCccCchhhhhccchhHHHHHhhccCccccccee
Q 001356 424 HFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFF 463 (1093)
Q Consensus 424 ~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgkf~PI~q~~ 463 (1093)
.++...-+.++.+.|+++|++..|++|.++++..-.++.|
T Consensus 246 ~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~~ 285 (312)
T cd01489 246 QMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVF 285 (312)
T ss_pred HHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhHh
Confidence 9999888999999999999999999999999865555543
No 30
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=7.8e-33 Score=315.34 Aligned_cols=166 Identities=30% Similarity=0.451 Sum_probs=156.2
Q ss_pred cCcchhhhhc--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccc
Q 001356 485 NSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 562 (1093)
Q Consensus 485 ~~Rydrqi~l--~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG 562 (1093)
.+||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|+|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGv-----g~i~lvD~D~ve~sNL~RQ~l~~~~d~~ 76 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGI-----GKLTIADRDYVEWSNLQRQQLYTEEDAK 76 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCCcccccccCccccccHHHcc
Confidence 3699999998 89999999999999999999999999999999999 9999999999999999999999999985
Q ss_pred --cchHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCc
Q 001356 563 --QAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGA 640 (1093)
Q Consensus 563 --~~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~ 640 (1093)
++|+++++++++++||+++|+++...+..++ + .++++++|+||+|+||.++|.++|++|+++++|+|.+|..|.
T Consensus 77 ~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~--~--~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~ 152 (338)
T PRK12475 77 QKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEE--L--EELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGS 152 (338)
T ss_pred CCccHHHHHHHHHHHHCCCcEEEEEeccCCHHH--H--HHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccc
Confidence 8999999999999999999999988776432 2 467899999999999999999999999999999999999999
Q ss_pred ccceEEEeCCcccccCcCC
Q 001356 641 KCNTQMVIPHLTENYGASR 659 (1093)
Q Consensus 641 ~G~v~v~ip~~t~~y~~~~ 659 (1093)
.|++.+++|+.|+||.|..
T Consensus 153 ~G~~~~~~P~~tpC~~Cl~ 171 (338)
T PRK12475 153 YGVTYTIIPGKTPCLRCLM 171 (338)
T ss_pred EEEEEEECCCCCCCHHHhc
Confidence 9999999999999999954
No 31
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.98 E-value=1.2e-32 Score=313.94 Aligned_cols=165 Identities=28% Similarity=0.425 Sum_probs=155.8
Q ss_pred cCcchhhhhc--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccc
Q 001356 485 NSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 562 (1093)
Q Consensus 485 ~~Rydrqi~l--~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG 562 (1093)
++||+||+++ ||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.|||+||+||+++|||
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGv-----g~i~lvD~D~Ve~sNL~RQ~l~~~~dig 76 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGV-----GKVTIVDRDYVEWSNLQRQQLYTESDVK 76 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCccCHHHcCccccccHHHhc
Confidence 4799999988 99999999999999999999999999999999999 9999999999999999999999999995
Q ss_pred --cchHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCc
Q 001356 563 --QAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGA 640 (1093)
Q Consensus 563 --~~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~ 640 (1093)
++|+++++++++++||+++|+++..++.+++. .++++++|+||+|+||+.+|.++|++|+.+++|+|.+++.|+
T Consensus 77 ~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~----~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~ 152 (339)
T PRK07688 77 NNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEEL----EELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGS 152 (339)
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----HHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeee
Confidence 59999999999999999999999988865332 457899999999999999999999999999999999999999
Q ss_pred ccceEEEeCCcccccCcC
Q 001356 641 KCNTQMVIPHLTENYGAS 658 (1093)
Q Consensus 641 ~G~v~v~ip~~t~~y~~~ 658 (1093)
.|++.+++|+.++||.|.
T Consensus 153 ~G~~~~~~p~~~pC~~Cl 170 (339)
T PRK07688 153 YGLSYTIIPGKTPCLRCL 170 (339)
T ss_pred eeEEEEECCCCCCCeEee
Confidence 999999999999999994
No 32
>PRK08223 hypothetical protein; Validated
Probab=99.97 E-value=2.6e-31 Score=292.20 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=147.4
Q ss_pred hhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHH
Q 001356 87 DEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALA 166 (1093)
Q Consensus 87 ~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a 166 (1093)
-+++|+||+.++|.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|||++||++
T Consensus 6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~ 85 (287)
T PRK08223 6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEV 85 (287)
T ss_pred HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCH--HHHHHHHHHHHhcCCCcceEeeeecceeEEEEeec
Q 001356 167 SIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISL--EKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDF 240 (1093)
Q Consensus 167 ~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~--~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~ 240 (1093)
++++|+++||+++|+++...+++ ++++++|+||++.|++ +++..+|++|++++ ||||++++.|+.|++.+-.
T Consensus 86 a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~--iP~V~~~~~g~~gqv~v~~ 163 (287)
T PRK08223 86 LAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRG--IPALTAAPLGMGTALLVFD 163 (287)
T ss_pred HHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcC--CCEEEEeccCCeEEEEEEc
Confidence 99999999999999999988765 5788999999999975 89999999999999 9999999999999976554
Q ss_pred --CCceEEe
Q 001356 241 --GPEFTVF 247 (1093)
Q Consensus 241 --g~~f~v~ 247 (1093)
+++|.++
T Consensus 164 p~~p~~~~~ 172 (287)
T PRK08223 164 PGGMSFDDY 172 (287)
T ss_pred CCCCchhhh
Confidence 3444443
No 33
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=99.97 E-value=4.6e-31 Score=288.78 Aligned_cols=155 Identities=19% Similarity=0.313 Sum_probs=146.8
Q ss_pred CCchhhhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCccc
Q 001356 83 PSDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG 160 (1093)
Q Consensus 83 ~~~~~~~~YsRQi~l--~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG 160 (1093)
.++.+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|
T Consensus 5 l~~~~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG 84 (245)
T PRK05690 5 LSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIG 84 (245)
T ss_pred CCHHHHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCC
Confidence 345667899999988 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEE
Q 001356 161 KNRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 236 (1093)
Q Consensus 161 k~Ka~a~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~v 236 (1093)
++||++++++|+++||+++|+++...+++ +++++||+||+|.|+.+.+..+|++|++++ +|||.+++.|+.|++
T Consensus 85 ~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~--ip~v~~~~~g~~G~v 162 (245)
T PRK05690 85 QPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAK--KPLVSGAAIRMEGQV 162 (245)
T ss_pred ChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhC--CEEEEeeeccCCceE
Confidence 99999999999999999999999988765 468899999999999999999999999999 999999999999998
Q ss_pred Eee
Q 001356 237 FCD 239 (1093)
Q Consensus 237 f~d 239 (1093)
..-
T Consensus 163 ~~~ 165 (245)
T PRK05690 163 TVF 165 (245)
T ss_pred EEE
Confidence 764
No 34
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=99.97 E-value=1.8e-31 Score=284.22 Aligned_cols=149 Identities=29% Similarity=0.438 Sum_probs=143.1
Q ss_pred hhhhhhhc--cCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHH
Q 001356 90 LHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALAS 167 (1093)
Q Consensus 90 ~YsRQi~l--~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~ 167 (1093)
|||||+++ ||.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++||+++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA 80 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeec
Q 001356 168 IQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDF 240 (1093)
Q Consensus 168 ~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~ 240 (1093)
+++|+++||+++++.+...+++ ++++++|+||+|.++.+.+..++++|++++ +|||.+++.|++|+++.-.
T Consensus 81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~--ip~i~~~~~g~~G~~~~~~ 155 (202)
T TIGR02356 81 AQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALG--TPLISAAVVGFGGQLMVFD 155 (202)
T ss_pred HHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCeEEEEEEe
Confidence 9999999999999999887754 468899999999999999999999999999 9999999999999998754
No 35
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.97 E-value=5e-31 Score=307.19 Aligned_cols=165 Identities=20% Similarity=0.272 Sum_probs=154.3
Q ss_pred CCchhhhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCccc
Q 001356 83 PSDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG 160 (1093)
Q Consensus 83 ~~~~~~~~YsRQi~l--~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG 160 (1093)
++..+.+||+||+++ ||.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+|
T Consensus 15 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG 94 (392)
T PRK07878 15 LTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVG 94 (392)
T ss_pred CCHHHHHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCC
Confidence 456667899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEE
Q 001356 161 KNRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 236 (1093)
Q Consensus 161 k~Ka~a~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~v 236 (1093)
++||++++++|+++||+|+|+++...++. +++++||+||+|.|+...+..+|++|++++ +|||++++.|++|++
T Consensus 95 ~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~--~p~v~~~~~g~~G~v 172 (392)
T PRK07878 95 RSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAG--KPYVWGSIYRFEGQA 172 (392)
T ss_pred ChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEE
Confidence 99999999999999999999999887764 578899999999999999999999999999 999999999999998
Q ss_pred Ee---e----cCCceEEecC
Q 001356 237 FC---D----FGPEFTVFDV 249 (1093)
Q Consensus 237 f~---d----~g~~f~v~d~ 249 (1093)
++ | ++++|.|.+.
T Consensus 173 ~~~~~~~~~~~~~c~~c~~~ 192 (392)
T PRK07878 173 SVFWEDAPDGLGLNYRDLYP 192 (392)
T ss_pred EEEecCCCCCCCCeeeeecC
Confidence 83 3 4668888765
No 36
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=99.97 E-value=3.6e-32 Score=265.48 Aligned_cols=123 Identities=41% Similarity=0.813 Sum_probs=99.0
Q ss_pred ccccccccccccccccCCCCCCccccCCcceeEEeEEEeCCCCcHHHHHHHHHHc-CCceeeeecCCceeeccC-Ccchh
Q 001356 966 YRNTFANLALPLFSMAEPVPPKVFKHQDMSWTVWDRWILRDNPTLRQLLQWLQDK-GLNAYSISYGSCLLFNSM-FPRHK 1043 (1093)
Q Consensus 966 ~rn~f~nla~p~~~~~eP~~~~~~~~~~~~~t~wd~~~v~~~~TL~~li~~~~~~-~l~~~~i~~g~~~LY~~~-~~~~~ 1043 (1093)
|||+|+|||+|+|+|+||.++++.++.+.+||+||||++.+++||++|+++|+++ |++++||++|++|||++| .++++
T Consensus 1 yrN~F~NLAlP~~~fsEP~~~~k~k~~~~~~T~WDr~~v~~~~Tl~~li~~~~~~~~lev~ml~~g~~~LY~~f~~~~~~ 80 (125)
T PF09358_consen 1 YRNSFLNLALPFFSFSEPIPAPKTKYNDKEWTLWDRIEVNGDMTLQELIDYFKEKYGLEVTMLSQGVSLLYSSFPPPKHK 80 (125)
T ss_dssp --EEEEETTTTEEEEE---B--EEEETTEEETTT-EEEEES--BHHHHHHHHHHTTS-EEEEEEETTEEEEETT-HHHHH
T ss_pred CccEEEEcCccceeeeeccCCCceEecCccccceeEEEEcCCCCHHHHHHHHHHHhCceEEEEEeCCEEEEecCChhhhH
Confidence 8999999999999999999999999999999999999999999999999999999 999999999999999999 55889
Q ss_pred hcccCcHHHHHHhhhcCCCCCCeeEEEEEEEeecCCCCccccCeE
Q 001356 1044 ERMDKKVVDLVRDVAKAELPPYRQHFDVVVACVDEDDNDIDIPQI 1088 (1093)
Q Consensus 1044 ~~l~~~l~~l~~~~~~~~~~~~~~~~~l~v~~~d~~~~~~~~P~v 1088 (1093)
+||+++|+||+++++++++|++++||+|+|+|+|++|+||++|+|
T Consensus 81 ~rl~~~i~elv~~v~k~~~~~~~~~l~l~v~~~d~~~edv~vP~i 125 (125)
T PF09358_consen 81 ERLKMPISELVEEVTKKPIPPGQKYLVLEVSCEDEDGEDVEVPYI 125 (125)
T ss_dssp HHTTSBHHHHHHHHTSS---TT--EEEEEEEEE-TTS-EE---EE
T ss_pred HHhCCcHHHHHHHhcCCCCCCCceEEEEEEEEeCCCCCccCCCCC
Confidence 999999999999999999999999999999999999999999997
No 37
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=4e-31 Score=307.14 Aligned_cols=177 Identities=32% Similarity=0.542 Sum_probs=160.6
Q ss_pred Ccchhhhhc--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcccc
Q 001356 486 SRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 563 (1093)
Q Consensus 486 ~Rydrqi~l--~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~ 563 (1093)
+||+||+.+ ||.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.|||+||+||++.|||+
T Consensus 114 ~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gv-----g~i~lvD~d~v~~sNl~Rq~l~~~~diG~ 188 (376)
T PRK08762 114 ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGV-----GTLGIVDHDVVDRSNLQRQILHTEDRVGQ 188 (376)
T ss_pred HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCC-----CeEEEEeCCEecchhhccccccchhhCCC
Confidence 799999998 99999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccc
Q 001356 564 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 643 (1093)
Q Consensus 564 ~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~ 643 (1093)
+|+++++++++++||+++|+++...+.+++. .++++++|+||+|+||+.+|.+++++|+++++|+|.+++.|+.|+
T Consensus 189 ~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~----~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~ 264 (376)
T PRK08762 189 PKVDSAAQRLAALNPDVQVEAVQERVTSDNV----EALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQ 264 (376)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeccCChHHH----HHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 9999999999999999999999888765321 467889999999999999999999999999999999999999999
Q ss_pred eEEEeCCc----ccccCcCC-C-CCCCCCCcccc
Q 001356 644 TQMVIPHL----TENYGASR-D-PPEKQAPMCTV 671 (1093)
Q Consensus 644 v~v~ip~~----t~~y~~~~-~-p~~~~~p~Ct~ 671 (1093)
+.++.|+. ++||.|.. . |.....|.|..
T Consensus 265 v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~~ 298 (376)
T PRK08762 265 VSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCAE 298 (376)
T ss_pred EEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCcc
Confidence 99999876 89999952 2 22223455643
No 38
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.97 E-value=4e-31 Score=291.63 Aligned_cols=166 Identities=38% Similarity=0.588 Sum_probs=156.6
Q ss_pred cCcchhhhhcc--CHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccc
Q 001356 485 NSRYDAQISVF--GSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIG 562 (1093)
Q Consensus 485 ~~Rydrqi~l~--G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG 562 (1093)
..||+||+.++ |.++|++|+.++|+|||+||+||+++++|+++|| |+++|+|.|+|+.|||+||++|++.|||
T Consensus 8 ~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGv-----g~l~i~D~d~v~~snL~rq~~~~~~dig 82 (254)
T COG0476 8 IERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGV-----GKLTIVDFDTVELSNLQRQFLFTEADVG 82 (254)
T ss_pred HHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCC-----CeEEEEcCCcccccccCceeeecccccC
Confidence 38999999994 5555999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCccc
Q 001356 563 QAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKC 642 (1093)
Q Consensus 563 ~~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G 642 (1093)
++|++++++.++++||.+.++++...++.++. ..+++++|+|++|+||+.+|..+|..|+..++|++++|+.|+.|
T Consensus 83 ~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~----~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g 158 (254)
T COG0476 83 KPKAEVAAKALRKLNPLVEVVAYLERLDEENA----EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEG 158 (254)
T ss_pred CcHHHHHHHHHHHhCCCCeEEEeecccChhhH----HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceE
Confidence 99999999999999999999999999876543 47889999999999999999999999999999999999999999
Q ss_pred ceEEEeCC-cccccCcCC
Q 001356 643 NTQMVIPH-LTENYGASR 659 (1093)
Q Consensus 643 ~v~v~ip~-~t~~y~~~~ 659 (1093)
++.+++|. .++||.|..
T Consensus 159 ~~~~~~~~~~~~c~~~~~ 176 (254)
T COG0476 159 QVTVIIPGDKTPCYRCLF 176 (254)
T ss_pred EEEEEecCCCCCcccccC
Confidence 99999999 599999854
No 39
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=99.97 E-value=1.1e-30 Score=283.43 Aligned_cols=150 Identities=28% Similarity=0.414 Sum_probs=143.2
Q ss_pred hhhhhhhc--cCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHH
Q 001356 90 LHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALAS 167 (1093)
Q Consensus 90 ~YsRQi~l--~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~ 167 (1093)
|||||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||||++++|+|++||+++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA 80 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeecC
Q 001356 168 IQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFG 241 (1093)
Q Consensus 168 ~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~g 241 (1093)
+++|+++||+++|+.++..++. ++++++|+||+|.++.+.+..++++|++++ +|||.+++.|+.|++....+
T Consensus 81 ~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~--ip~i~~g~~g~~g~v~~~~p 156 (228)
T cd00757 81 AERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLG--KPLVSGAVLGFEGQVTVFIP 156 (228)
T ss_pred HHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEEEEECC
Confidence 9999999999999999887754 478899999999999999999999999999 99999999999999876543
No 40
>PRK07411 hypothetical protein; Validated
Probab=99.97 E-value=1.6e-30 Score=302.21 Aligned_cols=165 Identities=22% Similarity=0.275 Sum_probs=152.6
Q ss_pred CCCchhhhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcc
Q 001356 82 NPSDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDV 159 (1093)
Q Consensus 82 ~~~~~~~~~YsRQi~l--~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~di 159 (1093)
.+++.+.+||+||+++ ||.++|+||++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+
T Consensus 10 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dv 89 (390)
T PRK07411 10 QLSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWV 89 (390)
T ss_pred cCCHHHHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHC
Confidence 3566778899999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEE
Q 001356 160 GKNRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGN 235 (1093)
Q Consensus 160 Gk~Ka~a~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~ 235 (1093)
|++||++++++|+++||+|+|+++...+++ +++.+||+||+|.|+.+.+..||++|++.+ +|+|++++.|++|+
T Consensus 90 G~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~--~p~v~~~~~g~~g~ 167 (390)
T PRK07411 90 GKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLN--KPNVYGSIFRFEGQ 167 (390)
T ss_pred CCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEccCEEE
Confidence 999999999999999999999999988765 578999999999999999999999999999 99999999999999
Q ss_pred EEeec---CCceEEec
Q 001356 236 IFCDF---GPEFTVFD 248 (1093)
Q Consensus 236 vf~d~---g~~f~v~d 248 (1093)
+.+-. +++|.|.-
T Consensus 168 ~~v~~~~~~~c~~c~~ 183 (390)
T PRK07411 168 ATVFNYEGGPNYRDLY 183 (390)
T ss_pred EEEECCCCCCChHHhc
Confidence 87653 23554443
No 41
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.97 E-value=6.6e-32 Score=291.56 Aligned_cols=175 Identities=31% Similarity=0.464 Sum_probs=162.5
Q ss_pred CCCCCCCCCccCcchhhhhc--cCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCc
Q 001356 475 PLDPRDLQPLNSRYDAQISV--FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSR 552 (1093)
Q Consensus 475 ~~~~~~~~~~~~Rydrqi~l--~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnR 552 (1093)
.++.+++ .||+||+.+ ||..+|.+|++++|+||||||+||..+..|+.+|| |+|-|||.|.||.|||.|
T Consensus 38 ~Ls~dei----~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGv-----G~lGiVD~DvVe~sNlhR 108 (427)
T KOG2017|consen 38 GLSLDEI----LRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGV-----GRLGIVDYDVVELSNLHR 108 (427)
T ss_pred CCCHHHH----HhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCC-----CeecccccceeehhhHHH
Confidence 4566666 899999988 99999999999999999999999999999999999 999999999999999999
Q ss_pred ccccccCccccchHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccce
Q 001356 553 QFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPL 632 (1093)
Q Consensus 553 Qflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pl 632 (1093)
|.++++..+|+.|++.|+..++++||+++|+.|...+..++. .+++++||+|+||+||+.+|..+++.|+.+++|+
T Consensus 109 QVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa----~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpL 184 (427)
T KOG2017|consen 109 QVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNA----FDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPL 184 (427)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhH----HHHhhccceEEEcCCCccchhhhhhHHHHcCCcc
Confidence 999999999999999999999999999999999999987664 3578999999999999999999999999999999
Q ss_pred EeccccCcccceEEEeCCcccccCc-CCCCC
Q 001356 633 LESGTLGAKCNTQMVIPHLTENYGA-SRDPP 662 (1093)
Q Consensus 633 i~sgt~G~~G~v~v~ip~~t~~y~~-~~~p~ 662 (1093)
|.+..+++.||..++--...+||.| .+.||
T Consensus 185 VSgSaLr~EGQLtvYny~~GPCYRClFP~Pp 215 (427)
T KOG2017|consen 185 VSGSALRWEGQLTVYNYNNGPCYRCLFPNPP 215 (427)
T ss_pred cccccccccceeEEeecCCCceeeecCCCCc
Confidence 9999999999988876577899999 34443
No 42
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=1.6e-30 Score=298.95 Aligned_cols=154 Identities=21% Similarity=0.283 Sum_probs=147.3
Q ss_pred chhhhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccch
Q 001356 85 DIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKN 162 (1093)
Q Consensus 85 ~~~~~~YsRQi~l--~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~ 162 (1093)
.++.+||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++
T Consensus 3 ~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~ 82 (355)
T PRK05597 3 NLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQP 82 (355)
T ss_pred hHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCCh
Confidence 4677899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEe
Q 001356 163 RALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFC 238 (1093)
Q Consensus 163 Ka~a~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~ 238 (1093)
||++++++|+++||+|+|+++...++. +++++||+||+|.|+.+.+..+|++|++++ +|||++.+.|+.|++++
T Consensus 83 Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~--ip~v~~~~~g~~g~v~~ 160 (355)
T PRK05597 83 KAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLG--IPHVWASILGFDAQLSV 160 (355)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEecCeEEEEE
Confidence 999999999999999999999888764 578999999999999999999999999999 99999999999999986
Q ss_pred ec
Q 001356 239 DF 240 (1093)
Q Consensus 239 d~ 240 (1093)
-.
T Consensus 161 ~~ 162 (355)
T PRK05597 161 FH 162 (355)
T ss_pred Ec
Confidence 43
No 43
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.97 E-value=6.2e-30 Score=283.28 Aligned_cols=260 Identities=18% Similarity=0.248 Sum_probs=196.6
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecccc-
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT- 188 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l~- 188 (1093)
+|||+|+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||+++++|||++||++++++|+++||+++|+++...+.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred --hhhhcCCceEEEecCCHHHHHHHHHHHHh--------cCCCcceEeeeecceeEEEEeecCCc---eEEe-cCCCCCC
Q 001356 189 --KEKLSDFQAVVFTDISLEKAVEFDDYCHN--------HQPPIAFIKSEVRGLFGNIFCDFGPE---FTVF-DVDGEEP 254 (1093)
Q Consensus 189 --~~~l~~~dvVV~~~~~~~~~~~ln~~c~~--------~~~~ip~I~~~~~G~~G~vf~d~g~~---f~v~-d~~ge~p 254 (1093)
.+++++||+||++.|+.+.|..+|+.|.+ .+ +|||.+++.|+.|++.+..+.. |.+. |..++.
T Consensus 81 ~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~--iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~- 157 (291)
T cd01488 81 KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESI--IPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQ- 157 (291)
T ss_pred hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccC--ccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCC-
Confidence 47899999999999999999999998754 35 8999999999999998876532 2222 111110
Q ss_pred ccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCcccccccccCCeEEEe
Q 001356 255 HTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQV 334 (1093)
Q Consensus 255 ~~~~i~~I~~~~p~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~y~~gg~~~qv 334 (1093)
.+..+..|.+ .|+..+.+ | .|.
T Consensus 158 ~~~p~Cti~~------------------------------------~P~~~~hc------i-----~~a----------- 179 (291)
T cd01488 158 VTFPLCTIAN------------------------------------TPRLPEHC------I-----EYA----------- 179 (291)
T ss_pred CCCCcccccC------------------------------------CCCCcchh------e-----eee-----------
Confidence 0111111110 00000000 0 000
Q ss_pred ecCeeecccchHHhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhhcCCccc
Q 001356 335 KQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERV 414 (1093)
Q Consensus 335 k~p~~~~f~sL~e~l~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~~~~ia~~i~~~~~~~~~ 414 (1093)
+.+.|.. +.| +.--...+.++.+.+.+.|++..+++++
T Consensus 180 ---~~~~~~~-----~~~-------------------------------~~~~~~d~~~~~~~i~~~a~~ra~~f~i--- 217 (291)
T cd01488 180 ---SLIQWPK-----EFP-------------------------------FVPLDGDDPEHIEWLYQKALERAAQFNI--- 217 (291)
T ss_pred ---eeeeccc-----ccC-------------------------------CCcCCCCCHHHHHHHHHHHHHHHHHcCC---
Confidence 0000000 001 0111122456677777888888777763
Q ss_pred cccCHHHHHHHHhhccCccCchhhhhccchhHHHHHhhccCcccccceeeccCCCCCC
Q 001356 415 EEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESLP 472 (1093)
Q Consensus 415 ~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~lp 472 (1093)
+.++-.+++.++...-+.++.+.|++||..+-|++|.+|+...+++||+.|.|-+++-
T Consensus 218 ~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~~ 275 (291)
T cd01488 218 SGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCY 275 (291)
T ss_pred CcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCceE
Confidence 4567788999999999999999999999999999999999999999999999988753
No 44
>PRK08328 hypothetical protein; Provisional
Probab=99.97 E-value=4.3e-30 Score=278.86 Aligned_cols=155 Identities=27% Similarity=0.446 Sum_probs=145.9
Q ss_pred chhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccc-hH
Q 001356 85 DIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGK-NR 163 (1093)
Q Consensus 85 ~~~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk-~K 163 (1093)
+.+.+||+||+++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|+ +|
T Consensus 4 ~~~~~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k 83 (231)
T PRK08328 4 ERELERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPK 83 (231)
T ss_pred HHHHHHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHH
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999 59
Q ss_pred HHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEee
Q 001356 164 ALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCD 239 (1093)
Q Consensus 164 a~a~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d 239 (1093)
+++++++|+++||+++|+++...+++ ++++++|+||+|.|+.+.+..++++|++++ +|+|.+++.|++|+++..
T Consensus 84 ~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~--ip~i~g~~~g~~G~v~~~ 161 (231)
T PRK08328 84 PLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKG--IPLVHGAVEGTYGQVTTI 161 (231)
T ss_pred HHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEeeccCEEEEEEE
Confidence 99999999999999999998877754 468899999999999999999999999999 999999999999999865
Q ss_pred cC
Q 001356 240 FG 241 (1093)
Q Consensus 240 ~g 241 (1093)
.+
T Consensus 162 ~p 163 (231)
T PRK08328 162 VP 163 (231)
T ss_pred CC
Confidence 43
No 45
>PRK14851 hypothetical protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=318.66 Aligned_cols=166 Identities=27% Similarity=0.394 Sum_probs=155.8
Q ss_pred cCcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccc
Q 001356 485 NSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 564 (1093)
Q Consensus 485 ~~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~ 564 (1093)
.+||+||+.+||.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|+|.||.||||||++|+.+|||++
T Consensus 23 ~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GV-----G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~ 97 (679)
T PRK14851 23 EAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGI-----GRFHIADFDQFEPVNVNRQFGARVPSFGRP 97 (679)
T ss_pred HHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCC-----CeEEEEcCCEecccccccCcCcChhhCCCH
Confidence 489999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCC--HHHHHHHhhcccccccceEeccccCccc
Q 001356 565 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDN--VNARLYIDQRCLYFQKPLLESGTLGAKC 642 (1093)
Q Consensus 565 Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn--~~aR~~i~~~c~~~~~pli~sgt~G~~G 642 (1093)
|+++++++++++||+++|+++...+.+++. ++|++++|+||+|+|| ..+|.++++.|+.+++|+|.+|..|+.|
T Consensus 98 Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~----~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g 173 (679)
T PRK14851 98 KLAVMKEQALSINPFLEITPFPAGINADNM----DAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSS 173 (679)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCChHHH----HHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccc
Confidence 999999999999999999999999976432 5789999999999998 5789999999999999999999999999
Q ss_pred ceEEEeCCcccccCcCCC
Q 001356 643 NTQMVIPHLTENYGASRD 660 (1093)
Q Consensus 643 ~v~v~ip~~t~~y~~~~~ 660 (1093)
++.++.|+ +.||.|.-+
T Consensus 174 ~~~~~~p~-~~~~~~~~~ 190 (679)
T PRK14851 174 AMLVFTPQ-GMGFDDYFN 190 (679)
T ss_pred eEEEEcCC-CCCHhHhcc
Confidence 99999997 677776433
No 46
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=99.97 E-value=3.4e-30 Score=280.76 Aligned_cols=148 Identities=22% Similarity=0.352 Sum_probs=141.3
Q ss_pred hhhhhhhhhcc--CHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHH
Q 001356 88 EDLHSRQLAVY--GRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRAL 165 (1093)
Q Consensus 88 ~~~YsRQi~l~--G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~ 165 (1093)
.+||+||+++| |.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+|++||+
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~ 81 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVE 81 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHH
Confidence 47999999997 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEE
Q 001356 166 ASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIF 237 (1093)
Q Consensus 166 a~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf 237 (1093)
+++++|+++||+++|+++...+++ ++++++|+||+|.|+.+.+..+|++|++++ +|||.+++.|+.|++.
T Consensus 82 ~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~--ip~v~~~~~g~~G~v~ 155 (240)
T TIGR02355 82 SAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAK--VPLVSGAAIRMEGQVS 155 (240)
T ss_pred HHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEecccEeEEE
Confidence 999999999999999999887765 478899999999999999999999999999 9999999999999875
No 47
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.97 E-value=1.6e-30 Score=281.21 Aligned_cols=161 Identities=27% Similarity=0.406 Sum_probs=142.7
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHccccc---C-CCc-ceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhC
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSC---G-NQG-KLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALIN 577 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~---~-~~g-~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~n 577 (1093)
-+..+|+||||||+||+++++||++|+++ | +.| +|+|+|+|+||.|||||| +|.+.|||++||++++++++.++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence 36789999999999999999999998643 2 113 999999999999999999 57889999999999999999988
Q ss_pred CCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccc--c-ccceEeccc--------cCc-----c
Q 001356 578 PHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY--F-QKPLLESGT--------LGA-----K 641 (1093)
Q Consensus 578 p~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~--~-~~pli~sgt--------~G~-----~ 641 (1093)
+++|+++..++.++ .++.++|+||+|+||+++|.++++.|++ . ++|++++|+ .|. +
T Consensus 88 -~~~i~a~~~~~~~~-------~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k 159 (244)
T TIGR03736 88 -GTDWTAHPERVERS-------STLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAK 159 (244)
T ss_pred -CceEEEEEeeeCch-------hhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccc
Confidence 89999999888752 2356899999999999999999999988 3 489999998 666 7
Q ss_pred cceEEEeCCcccccCcCCCC---CCCCCCccccc
Q 001356 642 CNTQMVIPHLTENYGASRDP---PEKQAPMCTVH 672 (1093)
Q Consensus 642 G~v~v~ip~~t~~y~~~~~p---~~~~~p~Ct~~ 672 (1093)
|++++++|+.|++|.|..+| ++++.|+||+.
T Consensus 160 ~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla 193 (244)
T TIGR03736 160 GENRLRLPHVGELFPELIDPSVDPDDDRPSCSLA 193 (244)
T ss_pred cCCceecCCchhhCcccccCccCCCCCCCCchHH
Confidence 89999999999999998888 77889999884
No 48
>PRK14852 hypothetical protein; Provisional
Probab=99.97 E-value=2.7e-30 Score=318.24 Aligned_cols=166 Identities=24% Similarity=0.404 Sum_probs=155.4
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcccc
Q 001356 484 LNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 563 (1093)
Q Consensus 484 ~~~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~ 563 (1093)
...||+||+.+||.++|++|++++|+||||||+||+++++||++|| |+|+|+|+|.||.||||||++|+..|||+
T Consensus 311 ~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGV-----G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~ 385 (989)
T PRK14852 311 TDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGI-----GNFNLADFDAYSPVNLNRQYGASIASFGR 385 (989)
T ss_pred HHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEecccccccccCCChhhCCC
Confidence 3579999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCH--HHHHHHhhcccccccceEeccccCcc
Q 001356 564 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNV--NARLYIDQRCLYFQKPLLESGTLGAK 641 (1093)
Q Consensus 564 ~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~--~aR~~i~~~c~~~~~pli~sgt~G~~ 641 (1093)
+|+++++++++++||+++|+++...+.+++. ++|++++|+||+|+|++ ++|++++..|+++++|+|.+|+.|+.
T Consensus 386 ~Kaevaa~~l~~INP~v~I~~~~~~I~~en~----~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~ 461 (989)
T PRK14852 386 GKLDVMTERALSVNPFLDIRSFPEGVAAETI----DAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYS 461 (989)
T ss_pred hHHHHHHHHHHHHCCCCeEEEEecCCCHHHH----HHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccC
Confidence 9999999999999999999999999876543 57899999999999985 67889999999999999999999999
Q ss_pred cceEEEeCCcccccCcCC
Q 001356 642 CNTQMVIPHLTENYGASR 659 (1093)
Q Consensus 642 G~v~v~ip~~t~~y~~~~ 659 (1093)
|++.++.|+ ..||.|.-
T Consensus 462 g~v~v~~p~-~~~~~~~f 478 (989)
T PRK14852 462 CALLVFMPG-GMNFDSYF 478 (989)
T ss_pred eeEEEEcCC-CCCHHHhC
Confidence 999999887 47888743
No 49
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.97 E-value=7e-30 Score=294.25 Aligned_cols=155 Identities=25% Similarity=0.379 Sum_probs=147.8
Q ss_pred CCchhhhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCccc
Q 001356 83 PSDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG 160 (1093)
Q Consensus 83 ~~~~~~~~YsRQi~l--~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG 160 (1093)
+++.+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++||+|||+++++|+|
T Consensus 14 ~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG 93 (370)
T PRK05600 14 LPTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVG 93 (370)
T ss_pred CCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCC
Confidence 456667899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEE
Q 001356 161 KNRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 236 (1093)
Q Consensus 161 k~Ka~a~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~v 236 (1093)
++||++++++|+++||+++|+++...+++ ++++++|+||+|.|+.+.+..+|++|++++ +|||++++.|+.|++
T Consensus 94 ~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~--iP~v~~~~~g~~G~v 171 (370)
T PRK05600 94 RPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEITG--TPLVWGTVLRFHGEL 171 (370)
T ss_pred CHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEEecCEEEE
Confidence 99999999999999999999999988865 478899999999999999999999999999 999999999999998
Q ss_pred Eee
Q 001356 237 FCD 239 (1093)
Q Consensus 237 f~d 239 (1093)
.+-
T Consensus 172 ~v~ 174 (370)
T PRK05600 172 AVF 174 (370)
T ss_pred EEE
Confidence 753
No 50
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.96 E-value=1.2e-29 Score=278.30 Aligned_cols=164 Identities=25% Similarity=0.395 Sum_probs=146.6
Q ss_pred cCcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccc
Q 001356 485 NSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 564 (1093)
Q Consensus 485 ~~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~ 564 (1093)
..||+||.++||.++|++|++++|+|||+||+||+++++|+++|| |+|+|+|+|.|+.||||||+++..+|||++
T Consensus 10 ~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GV-----g~itLiD~D~V~~sNlnRQ~~~~~~~vG~~ 84 (268)
T PRK15116 10 RQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGI-----GAITLIDMDDVCVTNTNRQIHALRDNVGLA 84 (268)
T ss_pred HHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCC-----CEEEEEeCCEecccccccccccChhhcChH
Confidence 379999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhh-ccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccc
Q 001356 565 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFW-ENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 643 (1093)
Q Consensus 565 Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~-~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~ 643 (1093)
|+++++++++++||+++|+++...+.+++. ++++ .++|+||+|+|++.++..++++|+.+++|+|.+|..|.+..
T Consensus 85 Kve~~~~rl~~INP~~~V~~i~~~i~~e~~----~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~d 160 (268)
T PRK15116 85 KAEVMAERIRQINPECRVTVVDDFITPDNV----AEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID 160 (268)
T ss_pred HHHHHHHHHHhHCCCcEEEEEecccChhhH----HHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCC
Confidence 999999999999999999999887765432 2334 57999999999999999999999999999999888877666
Q ss_pred -eEEEeCCcccccCc
Q 001356 644 -TQMVIPHLTENYGA 657 (1093)
Q Consensus 644 -v~v~ip~~t~~y~~ 657 (1093)
.++.+-++...+.|
T Consensus 161 p~~~~~~di~~t~~~ 175 (268)
T PRK15116 161 PTQIQVVDLAKTIQD 175 (268)
T ss_pred CCeEEEEeeecccCC
Confidence 44556665555543
No 51
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.1e-30 Score=284.24 Aligned_cols=362 Identities=17% Similarity=0.276 Sum_probs=240.3
Q ss_pred HHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEE
Q 001356 101 ETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAI 180 (1093)
Q Consensus 101 ~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V 180 (1093)
+-++++.++||||||+||+|||++|||++.|+++|+|+|.|+++.|||+|||||+..|||++||.++++..+++||.+++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 44677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccch-----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeecCCceEEecCCC-CCC
Q 001356 181 SALTTELTK-----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDG-EEP 254 (1093)
Q Consensus 181 ~~~~~~l~~-----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~g~~f~v~d~~g-e~p 254 (1093)
..+...+.+ +|+++||+|..|.|+.+.|..+|+.|.... +|+|.+++.|+.||+.+.....-.|++..+ +.|
T Consensus 85 ~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~--vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~~~ 162 (603)
T KOG2013|consen 85 VPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAAS--VPLIESGTGGFLGQVQVIIKGKTECYECIPKPVP 162 (603)
T ss_pred EeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhc--CCceecCcccccceEEEEecCCcceecccCCCCC
Confidence 999887643 689999999999999999999999999999 999999999999999986543344444443 456
Q ss_pred ccceeccccCCCCCceeecccccccc------cCCC--eEEE-----eEeecccccCCCCCeeeeccCCcc---------
Q 001356 255 HTGIIASISNDNPPLISCVDDERIEF------QDGD--LVVF-----SEVHGMTELNDGKPRKVKNARPYS--------- 312 (1093)
Q Consensus 255 ~~~~i~~I~~~~p~lv~~~~~~~h~~------~dgd--~v~f-----~ev~gm~~ln~~~~~~i~~~~~~~--------- 312 (1093)
.+..+..|.+...+-++|+-..+|.+ .+++ +..- ..-+.|++-....++..+....-+
T Consensus 163 kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~~~i~~~~~~ 242 (603)
T KOG2013|consen 163 KTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERRESIVEIDKN 242 (603)
T ss_pred CcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHHHHHHHHHhhc
Confidence 67888889887777888876555332 1111 1110 011112100000000000000000
Q ss_pred -----cccccCccccc---cccc--CCeEEEeecCeeecccchHHhhcCC-CC--ccccc--------cccCCCcchHHH
Q 001356 313 -----FSIDEDTTNYS---AYEK--GGIVTQVKQPKIINFKPLREALKDP-GD--FLLSD--------FSKFDRPPVLHL 371 (1093)
Q Consensus 313 -----~~i~~dt~~f~---~y~~--gg~~~qvk~p~~~~f~sL~e~l~~p-~~--~~~~d--------~~k~~r~~~l~~ 371 (1093)
+.| ++.-|. .|.. ...|++.+.|..++|......-..+ .. -...+ |+--.....+-.
T Consensus 243 ~~~~~~~i--~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~v~~v~~~~~vf~~ 320 (603)
T KOG2013|consen 243 LDFGPFKI--FNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSIVQSITSAQLNDQNVWTVDEGAVVFRL 320 (603)
T ss_pred cCCChhhh--hhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccchhhhccccccCCcceeeeccccHHHHH
Confidence 111 111121 1333 3457888888887765432211111 00 01111 110111223334
Q ss_pred HHHHHH-HHHHHhCCCCCCCCHH--HHHHHHHHHHHHHhhcCCccccccCHHHHHHHHhhccCccCchhhhhccchhHHH
Q 001356 372 AFQALD-KFIQELGRFPVAGSEE--DAQKIISLFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEV 448 (1093)
Q Consensus 372 ~~~al~-~F~~~~gr~P~~~~~~--D~~~~~~ia~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEV 448 (1093)
+.++|+ +..+..+++-..++.+ ++-+|++.|..+.... ..........++.+|...-..|+.++|+|||+..-|.
T Consensus 321 ~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~i--f~ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~ea 398 (603)
T KOG2013|consen 321 SIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHI--FGIPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEA 398 (603)
T ss_pred HHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhh--hccchhhhhchHhHhcccchhhhhhhhHHHHHHHHHH
Confidence 444441 1222222322333443 4456666555543321 1122223455789999888999999999999999999
Q ss_pred HHhhccCcccccceeeccCC
Q 001356 449 VKACSGKFHPLLQFFYFDSV 468 (1093)
Q Consensus 449 IKaiTgkf~PI~q~~~fD~~ 468 (1093)
+|.|+|+|.-.+..|++-..
T Consensus 399 iKvl~~~~~~~~~~f~~~~~ 418 (603)
T KOG2013|consen 399 IKVLGGDFDDCNMIFLAKRP 418 (603)
T ss_pred HHHhccchhcceeeEEccCC
Confidence 99999999999998887543
No 52
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.96 E-value=9.2e-28 Score=259.55 Aligned_cols=228 Identities=17% Similarity=0.203 Sum_probs=184.1
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeeccc--
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL-- 187 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l-- 187 (1093)
+|+|+|+||+|+|++|+|+++|||+|+|+|.|.|+.+||+|||+++++|+|++||++++++|+++||+++|+.+...+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred ----chhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeecCCceEEecCCCCCCccceecccc
Q 001356 188 ----TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIASIS 263 (1093)
Q Consensus 188 ----~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~i~~I~ 263 (1093)
+++++++||+||+|.|+.+.+..+|++|+.++ +|||.+++.|+.|++++..+....+++....++.
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~--iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~-------- 150 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLI--VPLIESGTEGFKGNAQVILPGMTECIECTLYPPQ-------- 150 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcccCCceEEEEEcCCCCCCcccCCCCCC--------
Confidence 24689999999999999999999999999999 9999999999999998776432111111100000
Q ss_pred CCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCcccccccccCCeEEEeecCeeeccc
Q 001356 264 NDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDTTNYSAYEKGGIVTQVKQPKIINFK 343 (1093)
Q Consensus 264 ~~~p~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f~~y~~gg~~~qvk~p~~~~f~ 343 (1093)
+.... .
T Consensus 151 -------------------------------------~~~p~-------------------------------------C 156 (234)
T cd01484 151 -------------------------------------KNFPM-------------------------------------C 156 (234)
T ss_pred -------------------------------------CCCCc-------------------------------------c
Confidence 00000 1
Q ss_pred chHHhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHhhcCCccccccCHHHHH
Q 001356 344 PLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELGRFPVAGSEEDAQKIISLFTNINDNLADERVEEIDHKLLC 423 (1093)
Q Consensus 344 sL~e~l~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~gr~P~~~~~~D~~~~~~ia~~i~~~~~~~~~~~i~~~li~ 423 (1093)
+++ ..| + ...|....|.+.|+ .+.++.+.+.+.++...++++ +..++...++
T Consensus 157 ti~---~~P------------~-~~~hci~~a~~~~~---------d~~~~~~~i~~~a~~ra~~~~---i~~~~~~~~~ 208 (234)
T cd01484 157 TIA---SMP------------R-LPEHCIEWARMLQW---------DDPEHIQFIFQASNERASQYN---IRGVTYFLTK 208 (234)
T ss_pred ccC---CCC------------C-CchHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHcC---CCCcCHHHHH
Confidence 111 112 1 12466667776665 356788888888888888776 3567888999
Q ss_pred HHHhhccCccCchhhhhccchhHHHH
Q 001356 424 HFAFGARAVLNPMAAMFGGIVGQEVV 449 (1093)
Q Consensus 424 ~~~~~~~~el~PvaA~iGGiaAQEVI 449 (1093)
.++...-+.++.+.|+++|+++-|++
T Consensus 209 ~i~~~iipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 209 GVAGRIIPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred HHhcCeecchhhHHHHHHHHHHHhhC
Confidence 99999999999999999999998863
No 53
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.95 E-value=2.8e-28 Score=278.15 Aligned_cols=151 Identities=26% Similarity=0.386 Sum_probs=142.9
Q ss_pred hhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCccc--chH
Q 001356 88 EDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG--KNR 163 (1093)
Q Consensus 88 ~~~YsRQi~l--~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG--k~K 163 (1093)
++||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+||+||++++++|+| ++|
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K 81 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK 81 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence 3699999988 999999999999999999999999999999999999999999999999999999999999995 599
Q ss_pred HHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEee
Q 001356 164 ALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCD 239 (1093)
Q Consensus 164 a~a~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d 239 (1093)
|++++++|+++||+++|+++...+++ ++++++|+||+|.|+.+.+..+|++|++++ +|||++++.|++|+++.-
T Consensus 82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~--iP~i~~~~~g~~G~~~~~ 159 (339)
T PRK07688 82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYG--IPWIYGACVGSYGLSYTI 159 (339)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEEEeeeeeeeEEEEE
Confidence 99999999999999999999887764 468899999999999999999999999999 999999999999997764
Q ss_pred c
Q 001356 240 F 240 (1093)
Q Consensus 240 ~ 240 (1093)
.
T Consensus 160 ~ 160 (339)
T PRK07688 160 I 160 (339)
T ss_pred C
Confidence 3
No 54
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.95 E-value=1.5e-28 Score=265.36 Aligned_cols=155 Identities=31% Similarity=0.424 Sum_probs=140.0
Q ss_pred cCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHH
Q 001356 495 FGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAA 574 (1093)
Q Consensus 495 ~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~ 574 (1093)
+|.++|++|++++|+|+||||+||+++++|+++|| |+|+|+|+|.|+.||||||++++.+|||++|+++++++++
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GV-----g~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~ 75 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGV-----GKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIR 75 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCC-----CEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHH
Confidence 69999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccc-eEEEeCCccc
Q 001356 575 LINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN-TQMVIPHLTE 653 (1093)
Q Consensus 575 ~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~-v~v~ip~~t~ 653 (1093)
++||+++|+++...+.+++. +..+..++|+||+|+|+..+|..++++|+.+++|+|.++..|.+.. +++.+.++..
T Consensus 76 ~inP~~~V~~~~~~i~~~~~---~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~ 152 (231)
T cd00755 76 DINPECEVDAVEEFLTPDNS---EDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISK 152 (231)
T ss_pred HHCCCcEEEEeeeecCHhHH---HHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEec
Confidence 99999999999998886443 1223357999999999999999999999999999999988888766 6677777666
Q ss_pred ccCc
Q 001356 654 NYGA 657 (1093)
Q Consensus 654 ~y~~ 657 (1093)
.+.|
T Consensus 153 t~~~ 156 (231)
T cd00755 153 TSGD 156 (231)
T ss_pred cccC
Confidence 6544
No 55
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=99.95 E-value=2.8e-28 Score=278.08 Aligned_cols=151 Identities=25% Similarity=0.428 Sum_probs=142.6
Q ss_pred hhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCccc--chH
Q 001356 88 EDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG--KNR 163 (1093)
Q Consensus 88 ~~~YsRQi~l--~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG--k~K 163 (1093)
++|||||+++ ||.++|++|++++|+|||+||+|+++|++|+++|||+|+|+|.|.|+.+||+||++++++|+| ++|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence 3699999998 899999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEee
Q 001356 164 ALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCD 239 (1093)
Q Consensus 164 a~a~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d 239 (1093)
|++++++|+++||+++|+++...+++ ++++++|+||+|.|+.+.+..+|++|++++ +|||++++.|++|+++..
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~--ip~i~~~~~g~~G~~~~~ 159 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYN--IPWIYGGCVGSYGVTYTI 159 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEEecccEEEEEEE
Confidence 99999999999999999999877753 568899999999999999999999999999 999999999999998754
Q ss_pred c
Q 001356 240 F 240 (1093)
Q Consensus 240 ~ 240 (1093)
.
T Consensus 160 ~ 160 (338)
T PRK12475 160 I 160 (338)
T ss_pred C
Confidence 4
No 56
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.95 E-value=3e-28 Score=260.91 Aligned_cols=156 Identities=28% Similarity=0.384 Sum_probs=140.1
Q ss_pred cCcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccc
Q 001356 485 NSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQA 564 (1093)
Q Consensus 485 ~~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~ 564 (1093)
+.-|+++...||.++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.+||+||+++ ++|+|++
T Consensus 8 ~~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~ 81 (212)
T PRK08644 8 EEFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGV-----GNLKLVDFDVVEPSNLNRQQYF-ISQIGMP 81 (212)
T ss_pred HHHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEeccccccccEee-hhhCCCh
Confidence 345667778899999999999999999999999999999999999 9999999999999999999976 6799999
Q ss_pred hHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc-ccceEeccccCcccc
Q 001356 565 KSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF-QKPLLESGTLGAKCN 643 (1093)
Q Consensus 565 Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~-~~pli~sgt~G~~G~ 643 (1093)
|+++++++++++||+++|+++..++.+++. +++++++|+||+|+||..+|.++++.|+++ ++|+|.++..|..|+
T Consensus 82 Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~----~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~ 157 (212)
T PRK08644 82 KVEALKENLLEINPFVEIEAHNEKIDEDNI----EELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGD 157 (212)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeeecCHHHH----HHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCC
Confidence 999999999999999999999988875332 468899999999999999999999999998 999998766677777
Q ss_pred eEEEeCC
Q 001356 644 TQMVIPH 650 (1093)
Q Consensus 644 v~v~ip~ 650 (1093)
+..+.|.
T Consensus 158 ~~~~~~~ 164 (212)
T PRK08644 158 SNSIKTR 164 (212)
T ss_pred ceEEEec
Confidence 6655443
No 57
>PRK07877 hypothetical protein; Provisional
Probab=99.95 E-value=2.2e-28 Score=299.30 Aligned_cols=181 Identities=24% Similarity=0.346 Sum_probs=156.1
Q ss_pred ceeeccCCCCCCCCCCCCCCCCCccCcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcc-cccCCCcceEE
Q 001356 461 QFFYFDSVESLPSEPLDPRDLQPLNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMG-VSCGNQGKLTI 539 (1093)
Q Consensus 461 q~~~fD~~e~lp~~~~~~~~~~~~~~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~G-v~~~~~g~i~l 539 (1093)
.|.||==-+.+- .-++++++. ..||+||+.+||.++|++|++++|+||||| +||.++.+||++| | |+|+|
T Consensus 66 ~w~~~pw~~~~v-~~~~~~~~~--~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvv-----G~l~l 136 (722)
T PRK07877 66 RWVYYPWRRTVV-HLLGPREFR--AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLC-----GELRL 136 (722)
T ss_pred cEEEecchhhee-ecCCHHHhh--HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCC-----CeEEE
Confidence 688885433322 123444443 389999999999999999999999999997 9999999999999 6 99999
Q ss_pred ecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHH
Q 001356 540 TDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARL 619 (1093)
Q Consensus 540 iD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~ 619 (1093)
+|+|.||.|||||| +|+..|||++|+++++++++++||+++|+++..++++++. ++|++++|+||||+||+++|.
T Consensus 137 vD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~----~~~l~~~DlVvD~~D~~~~R~ 211 (722)
T PRK07877 137 ADFDTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNV----DAFLDGLDVVVEECDSLDVKV 211 (722)
T ss_pred EcCCEEcccccccc-cCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHH----HHHhcCCCEEEECCCCHHHHH
Confidence 99999999999999 5899999999999999999999999999999999987553 578899999999999999999
Q ss_pred HHhhcccccccceEeccccCcccceE---E-EeCCcccccCcC
Q 001356 620 YIDQRCLYFQKPLLESGTLGAKCNTQ---M-VIPHLTENYGAS 658 (1093)
Q Consensus 620 ~i~~~c~~~~~pli~sgt~G~~G~v~---v-~ip~~t~~y~~~ 658 (1093)
.+|+.|+++++|+|.++..+ |++. + +.| .++||.|-
T Consensus 212 ~ln~~a~~~~iP~i~~~~~~--g~~~~e~~~~~p-~~pc~~cl 251 (722)
T PRK07877 212 LLREAARARRIPVLMATSDR--GLLDVERFDLEP-DRPILHGL 251 (722)
T ss_pred HHHHHHHHcCCCEEEEcCCC--CCcCcceeeeCC-CCceeecc
Confidence 99999999999999877555 6542 2 345 68999983
No 58
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.95 E-value=4e-28 Score=306.78 Aligned_cols=164 Identities=22% Similarity=0.329 Sum_probs=151.6
Q ss_pred hhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCC-----ceEEEEeCCcceeeCCCcceecccCcccc
Q 001356 87 DEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGV-----KSVTLHDEGVVELWDLSSNFIFSEDDVGK 161 (1093)
Q Consensus 87 ~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGV-----g~itLvD~d~V~~sdL~rqf~~~~~diGk 161 (1093)
..+|||||+++||.++|++|++++|+|+|+||+|||++|||+++|| |+|+|+|.|.|+.+||+|||+++++|||+
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk 477 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGK 477 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCc
Confidence 4689999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCcEEEEeecccc--------hhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeeccee
Q 001356 162 NRALASIQKLQELNNAVAISALTTELT--------KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLF 233 (1093)
Q Consensus 162 ~Ka~a~~~~L~eLNp~V~V~~~~~~l~--------~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~ 233 (1093)
+||++++++|+++||+++|+++...++ +++++++|+||+|.|+.+.+..+++.|+.++ +|+|.+++.|+.
T Consensus 478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~--iPli~~gt~G~~ 555 (1008)
T TIGR01408 478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFL--KPLLESGTLGTK 555 (1008)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEeccCce
Confidence 999999999999999999999887653 3578999999999999999999999999999 999999999999
Q ss_pred EEEEeecCCceEEecCCCC
Q 001356 234 GNIFCDFGPEFTVFDVDGE 252 (1093)
Q Consensus 234 G~vf~d~g~~f~v~d~~ge 252 (1093)
|++.+..+....+++...+
T Consensus 556 G~v~v~ip~~te~y~~~~d 574 (1008)
T TIGR01408 556 GNTQVVVPHLTESYGSSRD 574 (1008)
T ss_pred eeEEEEeCCCcCCCCCCCC
Confidence 9999987654444544443
No 59
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.95 E-value=1.4e-27 Score=263.41 Aligned_cols=158 Identities=32% Similarity=0.432 Sum_probs=148.9
Q ss_pred CCchhhhhhhhhhhccCH--HHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCccc
Q 001356 83 PSDIDEDLHSRQLAVYGR--ETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG 160 (1093)
Q Consensus 83 ~~~~~~~~YsRQi~l~G~--~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG 160 (1093)
..+.+.+||+||+++|+. ++|++|+.++|+|+|+||+|++++++|+++|||+++|+|+|.|+.+||+||++++++|+|
T Consensus 3 ~~~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig 82 (254)
T COG0476 3 LSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVG 82 (254)
T ss_pred ccHHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccC
Confidence 457788999999999654 459999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEE
Q 001356 161 KNRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 236 (1093)
Q Consensus 161 k~Ka~a~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~v 236 (1093)
++||+++++.|+++||.+++..+...++. +++.++|+|++|.++++.+..+|++|++++ +|++++++.|++|++
T Consensus 83 ~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~--~pli~~~~~~~~g~~ 160 (254)
T COG0476 83 KPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVKLG--IPLVHGGAIGFEGQV 160 (254)
T ss_pred CcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhC--CCeEeeeeccceEEE
Confidence 99999999999999999999999887654 578899999999999999999999999999 999999999999999
Q ss_pred EeecCC
Q 001356 237 FCDFGP 242 (1093)
Q Consensus 237 f~d~g~ 242 (1093)
++..+.
T Consensus 161 ~~~~~~ 166 (254)
T COG0476 161 TVIIPG 166 (254)
T ss_pred EEEecC
Confidence 998765
No 60
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.95 E-value=5.7e-28 Score=241.19 Aligned_cols=135 Identities=33% Similarity=0.643 Sum_probs=122.7
Q ss_pred hcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEE
Q 001356 504 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 583 (1093)
Q Consensus 504 ~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~ 583 (1093)
+++||+|+|+||+||+++++|+++|+ |+|+|+|+|.|+.+||+||+||+.+|+|++|+++++++++++||+++++
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~ 75 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGV-----GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVE 75 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTT-----SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCC-----CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeee
Confidence 57899999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred EEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccceEEE
Q 001356 584 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMV 647 (1093)
Q Consensus 584 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~v~v~ 647 (1093)
++..++.++.. .++++++|+||+|+|+.++|.+++++|+.+++|+|++|+.|+.|+++.+
T Consensus 76 ~~~~~~~~~~~----~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~~ 135 (135)
T PF00899_consen 76 AIPEKIDEENI----EELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVMV 135 (135)
T ss_dssp EEESHCSHHHH----HHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEEE
T ss_pred eeecccccccc----cccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEC
Confidence 99998853221 4677899999999999999999999999999999999999999998653
No 61
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.95 E-value=2.4e-27 Score=260.17 Aligned_cols=144 Identities=19% Similarity=0.316 Sum_probs=133.6
Q ss_pred CCchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccch
Q 001356 83 PSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKN 162 (1093)
Q Consensus 83 ~~~~~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~ 162 (1093)
+++...+||+||.+|||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+|++||+++..+|+|++
T Consensus 5 ~~~~~~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~ 84 (268)
T PRK15116 5 ISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLA 84 (268)
T ss_pred CCHHHHHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeecccch----hhh-cCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeee
Q 001356 163 RALASIQKLQELNNAVAISALTTELTK----EKL-SDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSE 228 (1093)
Q Consensus 163 Ka~a~~~~L~eLNp~V~V~~~~~~l~~----~~l-~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~ 228 (1093)
||+++++++.++||+++|+.+...+++ +++ .+||+||+|.|+...+..|+++|++++ +|||+++
T Consensus 85 Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~--ip~I~~g 153 (268)
T PRK15116 85 KAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNK--IPLVTTG 153 (268)
T ss_pred HHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEEC
Confidence 999999999999999999998776654 344 479999999999999999999999999 9999864
No 62
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.95 E-value=8.7e-28 Score=251.52 Aligned_cols=161 Identities=26% Similarity=0.387 Sum_probs=146.1
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcccc
Q 001356 484 LNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 563 (1093)
Q Consensus 484 ~~~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~ 563 (1093)
..+||.|..+++|.++.++|++++|+|||+||+||+.+..|+|+|+ |+|+|||+|.|..+|+|||.-....+||+
T Consensus 9 ~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGi-----g~itlID~D~v~vTN~NRQi~A~~~~iGk 83 (263)
T COG1179 9 YRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGI-----GRITLIDMDDVCVTNTNRQIHALLGDIGK 83 (263)
T ss_pred HHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCC-----CeEEEEecccccccccchhhHhhhhhccc
Confidence 3579999999999999999999999999999999999999999999 99999999999999999999988899999
Q ss_pred chHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccc
Q 001356 564 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 643 (1093)
Q Consensus 564 ~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~ 643 (1093)
+|+++++++++.+||+++|.++...+++++.+ +-|..++|+||||.|++.++..+-.+|+.+++|+|.+|..|.+-.
T Consensus 84 ~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~---~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~D 160 (263)
T COG1179 84 PKVEVMKERIKQINPECEVTAINDFITEENLE---DLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLD 160 (263)
T ss_pred HHHHHHHHHHHhhCCCceEeehHhhhCHhHHH---HHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCC
Confidence 99999999999999999999999999987643 335568999999999999999999999999999998877766554
Q ss_pred -eEEEeCCcc
Q 001356 644 -TQMVIPHLT 652 (1093)
Q Consensus 644 -v~v~ip~~t 652 (1093)
+++.+-++.
T Consensus 161 PTri~v~Dis 170 (263)
T COG1179 161 PTRIQVADIS 170 (263)
T ss_pred CceEEeeech
Confidence 555555543
No 63
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-26 Score=247.64 Aligned_cols=272 Identities=17% Similarity=0.267 Sum_probs=204.1
Q ss_pred cCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCC
Q 001356 98 YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA 177 (1093)
Q Consensus 98 ~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~ 177 (1093)
-+.|..+-|.+++|||||+||+|||++|||+++|++.+.++|.|+++.+||+|||+|++.|+|++||+++++.+....|.
T Consensus 30 ~~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~ 109 (422)
T KOG2015|consen 30 PSEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPG 109 (422)
T ss_pred CCHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCC
Confidence 36788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeeccc---chhhhcCCceEEEecCCHHHHHHHHHHHHhcCC--------CcceEeeeecceeEEEEeecCCceEE
Q 001356 178 VAISALTTEL---TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQP--------PIAFIKSEVRGLFGNIFCDFGPEFTV 246 (1093)
Q Consensus 178 V~V~~~~~~l---~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~--------~ip~I~~~~~G~~G~vf~d~g~~f~v 246 (1093)
+.|..+-..+ +.+|+++|++||+..|+.+.|.+||....+... -||+|.+++.|+-|.+.+..+.--.|
T Consensus 110 ~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~TaC 189 (422)
T KOG2015|consen 110 CVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITAC 189 (422)
T ss_pred cEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccHH
Confidence 9999887665 568999999999999999999999986544211 16999999999999999988643222
Q ss_pred e----cCCCCCCccceeccccCCCCCceeecccccccccCCCeEEEeEeecccccCCCCCeeeeccCCcccccccCcccc
Q 001356 247 F----DVDGEEPHTGIIASISNDNPPLISCVDDERIEFQDGDLVVFSEVHGMTELNDGKPRKVKNARPYSFSIDEDTTNY 322 (1093)
Q Consensus 247 ~----d~~ge~p~~~~i~~I~~~~p~lv~~~~~~~h~~~dgd~v~f~ev~gm~~ln~~~~~~i~~~~~~~~~i~~dt~~f 322 (1093)
+ |..+++. ...+..|.+ .|+-.+.+..|.
T Consensus 190 ieCtldlyppqv-s~P~CTiAn------------------------------------tPRlpEHciEyv---------- 222 (422)
T KOG2015|consen 190 IECTLDLYPPQV-SYPMCTIAN------------------------------------TPRLPEHCIEYV---------- 222 (422)
T ss_pred HHhHHhhcCccc-CcccceecC------------------------------------CCCCchHhhhhh----------
Confidence 2 1111110 011111111 111111111111
Q ss_pred cccccCCeEEEeecCeeecccchHHhhcCCCCccccccccCCCcchHHHHHHHHHHHHHHhC-CCCCC-CCHHHHHHHHH
Q 001356 323 SAYEKGGIVTQVKQPKIINFKPLREALKDPGDFLLSDFSKFDRPPVLHLAFQALDKFIQELG-RFPVA-GSEEDAQKIIS 400 (1093)
Q Consensus 323 ~~y~~gg~~~qvk~p~~~~f~sL~e~l~~p~~~~~~d~~k~~r~~~l~~~~~al~~F~~~~g-r~P~~-~~~~D~~~~~~ 400 (1093)
.+.+|.+.+- ..|.. .+.++.+.+++
T Consensus 223 ----------------------------------------------------~liqwpe~~~~g~~~~gdd~~hI~wi~e 250 (422)
T KOG2015|consen 223 ----------------------------------------------------KLIQWPELNPFGVPLDGDDPEHIEWIVE 250 (422)
T ss_pred ----------------------------------------------------hhhcchhhCccCCCCCCCCHHHHHHHHH
Confidence 0111111110 12222 23677777777
Q ss_pred HHHHHHhhcCCccccccCHHHHHHHHhhccCccCchhhhhccchhHHHHHhhccCcccccceeeccCCCCC
Q 001356 401 LFTNINDNLADERVEEIDHKLLCHFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLLQFFYFDSVESL 471 (1093)
Q Consensus 401 ia~~i~~~~~~~~~~~i~~~li~~~~~~~~~el~PvaA~iGGiaAQEVIKaiTgkf~PI~q~~~fD~~e~l 471 (1093)
-+.+..+++. ...++..++.-+....-+.++.++|+|++..|-|++|++|.-+.|++||+.|.+.++.
T Consensus 251 r~~eRA~ef~---I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~ 318 (422)
T KOG2015|consen 251 RSNERANEFN---ITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGI 318 (422)
T ss_pred HHHHHhhhcc---cccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccce
Confidence 7776666654 3346777777777777778888899999999999999999999999999999999885
No 64
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.94 E-value=1e-26 Score=270.36 Aligned_cols=156 Identities=27% Similarity=0.368 Sum_probs=146.5
Q ss_pred CCchhhhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCccc
Q 001356 83 PSDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG 160 (1093)
Q Consensus 83 ~~~~~~~~YsRQi~l--~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG 160 (1093)
....+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|||
T Consensus 108 ~s~~~~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG 187 (376)
T PRK08762 108 LTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVG 187 (376)
T ss_pred CCHHHHHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCC
Confidence 344556899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEE
Q 001356 161 KNRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 236 (1093)
Q Consensus 161 k~Ka~a~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~v 236 (1093)
++||++++++|+++||+++|+.+...+++ ++++++|+||+|+|+.+.+..+|++|++++ +|||.+++.|+.|++
T Consensus 188 ~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~--ip~i~~~~~g~~g~v 265 (376)
T PRK08762 188 QPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLG--KPLVYGAVFRFEGQV 265 (376)
T ss_pred CcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEEeccCEEEE
Confidence 99999999999999999999998877764 467899999999999999999999999999 999999999999998
Q ss_pred Eeec
Q 001356 237 FCDF 240 (1093)
Q Consensus 237 f~d~ 240 (1093)
..-.
T Consensus 266 ~~~~ 269 (376)
T PRK08762 266 SVFD 269 (376)
T ss_pred EEEe
Confidence 8643
No 65
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.94 E-value=2.4e-26 Score=266.16 Aligned_cols=131 Identities=23% Similarity=0.363 Sum_probs=124.7
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC-----ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 110 NILISGMQGLGAEIAKNLILAGV-----KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGV-----g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
+|+|||+||+|||++|||+++|| |+|+|+|.|.|+.+||+|||+++++|||++||++++++|+++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred cccc--------hhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeecCC
Q 001356 185 TELT--------KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGP 242 (1093)
Q Consensus 185 ~~l~--------~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~g~ 242 (1093)
..++ ++++.++|+||.|.|+.+.+..+++.|+.++ +|+|.+++.|+.|++.+-.+.
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~--iPli~~gt~G~~G~v~v~iP~ 144 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYR--KPLLESGTLGTKGNTQVVIPH 144 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhC--CCEEEEecccceeEEEEEeCC
Confidence 7653 3678999999999999999999999999999 999999999999999887654
No 66
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.94 E-value=3.4e-27 Score=249.21 Aligned_cols=122 Identities=31% Similarity=0.497 Sum_probs=113.1
Q ss_pred CchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchH
Q 001356 84 SDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNR 163 (1093)
Q Consensus 84 ~~~~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~K 163 (1093)
++.+.+||||||++||.++|+||++++|||+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||+++ |+|++|
T Consensus 2 s~~E~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~K 80 (287)
T PTZ00245 2 RDAEAVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTR 80 (287)
T ss_pred CHHHHHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcH
Confidence 3456789999999999999999999999999999999999999999999999999999999999999999997 689999
Q ss_pred HHHHHHHHHHhCCCcEEEEeecccchhhhcCCceEEEecCCHHHH
Q 001356 164 ALASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFTDISLEKA 208 (1093)
Q Consensus 164 a~a~~~~L~eLNp~V~V~~~~~~l~~~~l~~~dvVV~~~~~~~~~ 208 (1093)
|++++++|+++||+|+|+.+...++++ .+|++||++..+.+..
T Consensus 81 AeaAa~~L~eLNP~V~V~~i~~rld~~--n~fqvvV~~~~~le~a 123 (287)
T PTZ00245 81 GARALGALQRLNPHVSVYDAVTKLDGS--SGTRVTMAAVITEEDA 123 (287)
T ss_pred HHHHHHHHHHHCCCcEEEEcccccCCc--CCceEEEEEcccHHHH
Confidence 999999999999999999998877653 4899999999776654
No 67
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.94 E-value=1.6e-27 Score=257.79 Aligned_cols=170 Identities=24% Similarity=0.297 Sum_probs=159.9
Q ss_pred CCchhhhhhhhhhhc--cCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCccc
Q 001356 83 PSDIDEDLHSRQLAV--YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVG 160 (1093)
Q Consensus 83 ~~~~~~~~YsRQi~l--~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diG 160 (1093)
.+..+..||+|||.+ +|..||.+|.+++|||||+||+||..+..|+.+|||++.|+|.|+|+.+||.||.+.+++.+|
T Consensus 39 Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg 118 (427)
T KOG2017|consen 39 LSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVG 118 (427)
T ss_pred CCHHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhh
Confidence 456778999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEE
Q 001356 161 KNRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 236 (1093)
Q Consensus 161 k~Ka~a~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~v 236 (1093)
+.||++++..++++||+|+|..+...++. +.+++||+|++|+|+..+|..|++.|...| +|+|+++..++.|++
T Consensus 119 ~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLg--kpLVSgSaLr~EGQL 196 (427)
T KOG2017|consen 119 MHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLG--KPLVSGSALRWEGQL 196 (427)
T ss_pred hHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcC--Cccccccccccccee
Confidence 99999999999999999999999998865 579999999999999999999999999999 999999999999988
Q ss_pred Ee---ecCCceEEecCCCCCC
Q 001356 237 FC---DFGPEFTVFDVDGEEP 254 (1093)
Q Consensus 237 f~---d~g~~f~v~d~~ge~p 254 (1093)
.+ +-|++|.|+.+++.+|
T Consensus 197 tvYny~~GPCYRClFP~Ppp~ 217 (427)
T KOG2017|consen 197 TVYNYNNGPCYRCLFPNPPPP 217 (427)
T ss_pred EEeecCCCceeeecCCCCcCh
Confidence 44 5688999988876654
No 68
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.94 E-value=7.7e-27 Score=276.59 Aligned_cols=156 Identities=22% Similarity=0.274 Sum_probs=132.9
Q ss_pred cCcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcc---
Q 001356 485 NSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI--- 561 (1093)
Q Consensus 485 ~~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dv--- 561 (1093)
|-++-|-+.+ -.-..++|+++||+||||||+||.+|++|+++|| |+|+|||+|+|+.|||+||+||+.+|+
T Consensus 319 nlkLmkWRll-P~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GV-----g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~ 392 (664)
T TIGR01381 319 NLKLMKWRLH-PDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGV-----RHITFVDNGKVSYSNPVRQSLSNFEDCLLG 392 (664)
T ss_pred HHHHHhhhcC-ChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCC-----CeEEEEcCCEECCCccccccccchhhhhhc
Confidence 3344444333 2233489999999999999999999999999999 999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHhCCCCEEEEEeccc-------Cccc-cccc-----hhhhhccCCEEEEccCCHHHHHHHhhccccc
Q 001356 562 GQAKSTVAASAAALINPHLNTEALQIRA-------NPET-ENVF-----NDTFWENLNVVVNALDNVNARLYIDQRCLYF 628 (1093)
Q Consensus 562 G~~Ka~va~~~l~~~np~~~i~~~~~~v-------~~~~-~~~~-----~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~ 628 (1093)
|++||++|+++|+++||+++|+++..++ .++. +.+. -.++++++|+|++|+||.++|.+++.+|+.+
T Consensus 393 Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~ 472 (664)
T TIGR01381 393 GRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRH 472 (664)
T ss_pred CCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999885 3221 1111 1468899999999999999999999999999
Q ss_pred ccceEeccccCcccceEEE
Q 001356 629 QKPLLESGTLGAKCNTQMV 647 (1093)
Q Consensus 629 ~~pli~sgt~G~~G~v~v~ 647 (1093)
++|+|+++ .|+.|++-+.
T Consensus 473 ~kplI~aA-lGfdg~lvmr 490 (664)
T TIGR01381 473 KKIAISAA-LGFDSYVVMR 490 (664)
T ss_pred CCCEEEEE-eccceEEEEE
Confidence 99999874 8998886654
No 69
>PRK14852 hypothetical protein; Provisional
Probab=99.94 E-value=9e-27 Score=287.29 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=143.7
Q ss_pred chhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHH
Q 001356 85 DIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRA 164 (1093)
Q Consensus 85 ~~~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka 164 (1093)
.....+|+||+++||.++|+||++++|+|+||||+|++++++|+++|||+|+|+|.|.|+.+||+|||+++.+|||++||
T Consensus 309 ~~~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Ka 388 (989)
T PRK14852 309 AYTDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKL 388 (989)
T ss_pred HHHHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHH
Confidence 34466999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCC--HHHHHHHHHHHHhcCCCcceEeeeecceeEEEEe
Q 001356 165 LASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDIS--LEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFC 238 (1093)
Q Consensus 165 ~a~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~--~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~ 238 (1093)
++++++|+++||+|+|+++...+++ ++++++|+||+|.|+ .+.+..+++.|++++ ||||.+++.|+.|++++
T Consensus 389 evaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~--IP~I~ag~~G~~g~v~v 466 (989)
T PRK14852 389 DVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELG--IPVITAGPLGYSCALLV 466 (989)
T ss_pred HHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcC--CCEEEeeccccCeeEEE
Confidence 9999999999999999999887754 578899999999985 456788899999999 99999999999999887
Q ss_pred ec
Q 001356 239 DF 240 (1093)
Q Consensus 239 d~ 240 (1093)
..
T Consensus 467 ~~ 468 (989)
T PRK14852 467 FM 468 (989)
T ss_pred Ec
Confidence 54
No 70
>PRK14851 hypothetical protein; Provisional
Probab=99.94 E-value=1.7e-26 Score=282.41 Aligned_cols=156 Identities=15% Similarity=0.194 Sum_probs=146.8
Q ss_pred CCchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccch
Q 001356 83 PSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKN 162 (1093)
Q Consensus 83 ~~~~~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~ 162 (1093)
..+...++|+||+++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++.+|||++
T Consensus 18 ~~~~~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~ 97 (679)
T PRK14851 18 AAEYREAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRP 97 (679)
T ss_pred HHHHHHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCH
Confidence 35667799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCC--HHHHHHHHHHHHhcCCCcceEeeeecceeEEE
Q 001356 163 RALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDIS--LEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 236 (1093)
Q Consensus 163 Ka~a~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~--~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~v 236 (1093)
|+++++++|+++||+++|+++...+++ ++++++|+||+|.|+ .+.+..|++.|++++ ||+|.+++.|+.|++
T Consensus 98 Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~--iP~i~~g~~G~~g~~ 175 (679)
T PRK14851 98 KLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKG--IPVITAGPLGYSSAM 175 (679)
T ss_pred HHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCC--CCEEEeecccccceE
Confidence 999999999999999999999988865 478899999999995 567889999999999 999999999999998
Q ss_pred Eeec
Q 001356 237 FCDF 240 (1093)
Q Consensus 237 f~d~ 240 (1093)
++-.
T Consensus 176 ~~~~ 179 (679)
T PRK14851 176 LVFT 179 (679)
T ss_pred EEEc
Confidence 8654
No 71
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.94 E-value=1.6e-26 Score=232.91 Aligned_cols=133 Identities=37% Similarity=0.602 Sum_probs=125.9
Q ss_pred cEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEEEe
Q 001356 507 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 586 (1093)
Q Consensus 507 ~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~~ 586 (1093)
+|+||||||+||+++++|+++|+ |+|+|+|+|.|+.+||+||++++.+|+|++|+++++++++++||+++++.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~ 75 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVP 75 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccceEEEe
Q 001356 587 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVI 648 (1093)
Q Consensus 587 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~v~v~i 648 (1093)
..+...+. .++++++|+||+|.|+.++|.+++++|+++++|+|++|+.|+.|+++++.
T Consensus 76 ~~~~~~~~----~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 76 EGISEDNL----DDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred eecChhhH----HHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 87764322 57889999999999999999999999999999999999999999999876
No 72
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.93 E-value=1.7e-26 Score=260.98 Aligned_cols=149 Identities=18% Similarity=0.190 Sum_probs=139.8
Q ss_pred Ccchhhhhc---cC-HHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcc
Q 001356 486 SRYDAQISV---FG-SKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI 561 (1093)
Q Consensus 486 ~Rydrqi~l---~G-~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dv 561 (1093)
.||.||+.+ || .++|++|++++|+ |||+||.++..||. || |+|+|+|.|.||.|||+ +||+++||
T Consensus 53 ~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GV-----g~L~ivD~D~Ve~SNL~--~L~~~~di 121 (318)
T TIGR03603 53 ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NV-----GALFISDKTYFQETAEI--DLYSKEFI 121 (318)
T ss_pred HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CC-----CEEEEEcCCEechhhHH--HHhChhhc
Confidence 799999998 55 5589999999999 99999999999999 99 99999999999999999 99999999
Q ss_pred ccchHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHH--HhhcccccccceEeccccC
Q 001356 562 GQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLY--IDQRCLYFQKPLLESGTLG 639 (1093)
Q Consensus 562 G~~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~--i~~~c~~~~~pli~sgt~G 639 (1093)
|++|+++|++++.++||.++|+.+ .++++++|+||+|+||+.+|.. +|+.|++.++|+|.++..|
T Consensus 122 G~~K~~~a~~~L~~lnp~v~i~~~-------------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g 188 (318)
T TIGR03603 122 LKKDIRDLTSNLDALELTKNVDEL-------------KDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDG 188 (318)
T ss_pred CcHHHHHHHHHHHHhCCCCEEeeH-------------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEcc
Confidence 999999999999999999999763 2467899999999999999965 9999999999999999999
Q ss_pred cccceEEEeCCcccccCcC
Q 001356 640 AKCNTQMVIPHLTENYGAS 658 (1093)
Q Consensus 640 ~~G~v~v~ip~~t~~y~~~ 658 (1093)
+.|++.+++|+.|+||.|.
T Consensus 189 ~~Gqv~~~~P~~t~C~~Cl 207 (318)
T TIGR03603 189 PFVFITCTLPPETGCFECL 207 (318)
T ss_pred CEEEEEEEeCCCCCcHHHc
Confidence 9999998889889999995
No 73
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.93 E-value=2.8e-25 Score=221.78 Aligned_cols=130 Identities=35% Similarity=0.617 Sum_probs=120.3
Q ss_pred hcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 107 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 107 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
++++|+|+|+||+|+++|++|+++||++|+|+|+|.|+++|++|||+++.+|+|++||++++++|+++||+++++++...
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEe
Q 001356 187 LTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFC 238 (1093)
Q Consensus 187 l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~ 238 (1093)
+++ ++++++|+||+|.++.+.+..++++|++++ +|||++++.|+.|++..
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~--~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYG--IPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT---EEEEEEEETTEEEEEE
T ss_pred cccccccccccCCCEEEEecCCHHHHHHHHHHHHHcC--CCEEEEEeecCEEEEEE
Confidence 843 567899999999999999999999999999 99999999999999864
No 74
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.93 E-value=1.1e-25 Score=247.32 Aligned_cols=133 Identities=23% Similarity=0.331 Sum_probs=119.4
Q ss_pred cEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCc--cccchHHHHHHHHHHhCCCCEEEE
Q 001356 507 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWN--IGQAKSTVAASAAALINPHLNTEA 584 (1093)
Q Consensus 507 ~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~d--vG~~Ka~va~~~l~~~np~~~i~~ 584 (1093)
||+||||||+||++|++|+++|| |+|+|+|+|+|+.|||+||+||+.+| +|++|+++|+++|+++||+++|++
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----g~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~ 75 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----RHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATG 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----CeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEE
Confidence 69999999999999999999999 99999999999999999999999999 999999999999999999999999
Q ss_pred EecccC-------c--------cccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccceEEE
Q 001356 585 LQIRAN-------P--------ETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMV 647 (1093)
Q Consensus 585 ~~~~v~-------~--------~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~v~v~ 647 (1093)
+...+. + +.+++ .++++++|+||+|+||.++|.+++.+|..+++|+|+ +..|+.|++-+.
T Consensus 76 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l--~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvmr 150 (307)
T cd01486 76 IVLSIPMPGHPISESEVPSTLKDVKRL--EELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVMR 150 (307)
T ss_pred eeeeccccccccccccccccccCHHHH--HHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEEE
Confidence 987651 0 00111 467899999999999999999999999999999998 577888876543
No 75
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.92 E-value=2.4e-25 Score=231.51 Aligned_cols=142 Identities=28% Similarity=0.412 Sum_probs=127.8
Q ss_pred cEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEEEe
Q 001356 507 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 586 (1093)
Q Consensus 507 ~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~~ 586 (1093)
||+||||||+||+++++|+++|+ |+|+|+|.|.|+.+||+||+++ .+|+|++|+++++++++++||+++++++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-----g~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~ 74 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-----GNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAIN 74 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-----CeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEE
Confidence 69999999999999999999999 9999999999999999999965 67999999999999999999999999999
Q ss_pred cccCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc-ccceEeccccCcccceEEEeCCc--ccccCcC
Q 001356 587 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF-QKPLLESGTLGAKCNTQMVIPHL--TENYGAS 658 (1093)
Q Consensus 587 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~-~~pli~sgt~G~~G~v~v~ip~~--t~~y~~~ 658 (1093)
.++.+++ .+++++++|+||+|+||..+|..+++.|.+. ++|+|.++..|..|++..+.|.. ..||.|.
T Consensus 75 ~~~~~~~----~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 75 IKIDENN----LEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred eecChhh----HHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 8887533 1568899999999999999999888887777 99999998889999988777654 3588875
No 76
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.92 E-value=6.1e-25 Score=235.36 Aligned_cols=146 Identities=23% Similarity=0.270 Sum_probs=131.8
Q ss_pred hhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHH
Q 001356 88 EDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALAS 167 (1093)
Q Consensus 88 ~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~ 167 (1093)
++.|.++...||.++|++|++++|+|+|+||+|+++|++|+++||++|+|+|.|.|+.+||+||+|+ ++|+|++||+++
T Consensus 8 ~~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a 86 (212)
T PRK08644 8 EEFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEAL 86 (212)
T ss_pred HHHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHH
Confidence 3455555566999999999999999999999999999999999999999999999999999999876 789999999999
Q ss_pred HHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhc-CCCcceEeeeecceeEEE
Q 001356 168 IQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNH-QPPIAFIKSEVRGLFGNI 236 (1093)
Q Consensus 168 ~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~-~~~ip~I~~~~~G~~G~v 236 (1093)
+++|+++||+++|+++...+++ ++++++|+||+|.|+.+.+..+++.|+++ + +|+|.+...|.+|++
T Consensus 87 ~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~--~p~I~~~~~~~~~~~ 158 (212)
T PRK08644 87 KENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPG--KKLVAASGMAGYGDS 158 (212)
T ss_pred HHHHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCC--CCEEEeehhhccCCc
Confidence 9999999999999999887765 57889999999999999999999999999 9 999998655555543
No 77
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.92 E-value=4e-25 Score=238.78 Aligned_cols=132 Identities=27% Similarity=0.379 Sum_probs=123.7
Q ss_pred cCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCC
Q 001356 98 YGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA 177 (1093)
Q Consensus 98 ~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~ 177 (1093)
+|.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+|++||++++++|+++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeecccch----hhh-cCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecc
Q 001356 178 VAISALTTELTK----EKL-SDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRG 231 (1093)
Q Consensus 178 V~V~~~~~~l~~----~~l-~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G 231 (1093)
++|+.+...+++ +++ .+||+||+|.|+.+.+..|+++|++++ +|||++...|
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~--ip~I~s~g~g 137 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK--IPVISSMGAG 137 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEEEeCCc
Confidence 999999887764 334 469999999999999999999999999 9999975544
No 78
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.92 E-value=9.1e-25 Score=220.21 Aligned_cols=129 Identities=30% Similarity=0.435 Sum_probs=123.7
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecccch
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTK 189 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l~~ 189 (1093)
+|+|+|+||+|+++++||+++|+++|+|+|+|.|+.+||+||||++++|+|++||++++++|+++||+++|+.+...+++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999877654
Q ss_pred ----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeec
Q 001356 190 ----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDF 240 (1093)
Q Consensus 190 ----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~ 240 (1093)
++++++|+||+|.++.+.+..++++|++++ +|||.+++.|+.|+++++.
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~--i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELG--IPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcCCCcEEEEEEEE
Confidence 578999999999999999999999999999 9999999999999999876
No 79
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.91 E-value=1.9e-24 Score=229.47 Aligned_cols=156 Identities=30% Similarity=0.457 Sum_probs=128.6
Q ss_pred hhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHH
Q 001356 490 AQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVA 569 (1093)
Q Consensus 490 rqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va 569 (1093)
.+..-+|.+.|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.||.+||+||+ |..+|+|++|++++
T Consensus 6 ~~~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gv-----g~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~ 79 (200)
T TIGR02354 6 ALVARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGI-----GKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEAL 79 (200)
T ss_pred HHHHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCC-----CEEEEECCCEEccccccccc-CChhhCCCHHHHHH
Confidence 3445689999999999999999999999999999999999 99999999999999999997 46689999999999
Q ss_pred HHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccc-c-ccceEeccccCcccce--E
Q 001356 570 ASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY-F-QKPLLESGTLGAKCNT--Q 645 (1093)
Q Consensus 570 ~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~-~-~~pli~sgt~G~~G~v--~ 645 (1093)
++.++++||.++++++..++.+++ + .++++++|+||+|+||..+|..+.+.|.. + ..+++.+ .|..|+. .
T Consensus 80 ~~~l~~inp~~~i~~~~~~i~~~~--~--~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~ 153 (200)
T TIGR02354 80 KENISEINPYTEIEAYDEKITEEN--I--DKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDAN 153 (200)
T ss_pred HHHHHHHCCCCEEEEeeeeCCHhH--H--HHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCc
Confidence 999999999999999999887543 2 46789999999999999999987666544 4 4455543 3444433 3
Q ss_pred EE-eCC-cccccCc
Q 001356 646 MV-IPH-LTENYGA 657 (1093)
Q Consensus 646 v~-ip~-~t~~y~~ 657 (1093)
.+ .+. ...||.|
T Consensus 154 ~~~~~~~~~~~~~~ 167 (200)
T TIGR02354 154 SIKTRKISKHFYLC 167 (200)
T ss_pred eEEecccCCCEEEc
Confidence 33 322 2458888
No 80
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.91 E-value=3.1e-24 Score=225.02 Aligned_cols=143 Identities=20% Similarity=0.318 Sum_probs=135.2
Q ss_pred chhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHH
Q 001356 85 DIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRA 164 (1093)
Q Consensus 85 ~~~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka 164 (1093)
+...+||.|.-+|+|.++++||++++|+|+|+||+|++++..|+++|||+|+|+|.|.|+.+|+|||......+||++|+
T Consensus 7 ~~~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv 86 (263)
T COG1179 7 DAYRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKV 86 (263)
T ss_pred HHHHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHH
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeecccchhh-----hcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeee
Q 001356 165 LASIQKLQELNNAVAISALTTELTKEK-----LSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEV 229 (1093)
Q Consensus 165 ~a~~~~L~eLNp~V~V~~~~~~l~~~~-----l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~ 229 (1093)
++++++++++||+++|.++...+++++ ..+||+||+|.|+......|-.+|++++ ||+|+++.
T Consensus 87 ~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~k--i~vIss~G 154 (263)
T COG1179 87 EVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNK--IPVISSMG 154 (263)
T ss_pred HHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcC--CCEEeecc
Confidence 999999999999999999999888753 4469999999999999999999999999 99999553
No 81
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.91 E-value=2.8e-24 Score=227.26 Aligned_cols=114 Identities=24% Similarity=0.410 Sum_probs=105.9
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccch
Q 001356 486 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 565 (1093)
Q Consensus 486 ~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~K 565 (1093)
.|||||+++||.++|++|++++|+|||+||+|||++|||+++|| |+|+|+|.|.|+.+||+|||++++ ++|++|
T Consensus 7 ~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGV-----GsItIvDdD~Ve~SNL~RQfl~~~-dvGk~K 80 (287)
T PTZ00245 7 VRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGV-----RAVAVADEGLVTDADVCTNYLMQG-EAGGTR 80 (287)
T ss_pred HHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCC-----CeEEEecCCccchhhhcccccccc-ccCCcH
Confidence 79999999999999999999999999999999999999999999 999999999999999999999997 789999
Q ss_pred HHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCH
Q 001356 566 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNV 615 (1093)
Q Consensus 566 a~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~ 615 (1093)
+++++++++++||+++|+++..++++. ..|.+|+-+.-..
T Consensus 81 AeaAa~~L~eLNP~V~V~~i~~rld~~----------n~fqvvV~~~~~l 120 (287)
T PTZ00245 81 GARALGALQRLNPHVSVYDAVTKLDGS----------SGTRVTMAAVITE 120 (287)
T ss_pred HHHHHHHHHHHCCCcEEEEcccccCCc----------CCceEEEEEcccH
Confidence 999999999999999999999887642 3678888775444
No 82
>PRK07877 hypothetical protein; Provisional
Probab=99.90 E-value=1.2e-23 Score=257.93 Aligned_cols=149 Identities=23% Similarity=0.271 Sum_probs=138.8
Q ss_pred CCchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCC-ceEEEEeCCcceeeCCCcceecccCcccc
Q 001356 83 PSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGK 161 (1093)
Q Consensus 83 ~~~~~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk 161 (1093)
..+...+||+||+.+||.++|++|++++|+|+|+| +|+.+|.+|+++|| |+|+|+|.|.|+.+||+|| +++..|+|+
T Consensus 82 ~~~~~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~ 159 (722)
T PRK07877 82 PREFRAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGV 159 (722)
T ss_pred HHHhhHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhccc
Confidence 35777899999999999999999999999999996 99999999999996 9999999999999999998 579999999
Q ss_pred hHHHHHHHHHHHhCCCcEEEEeecccch----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEE
Q 001356 162 NRALASIQKLQELNNAVAISALTTELTK----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIF 237 (1093)
Q Consensus 162 ~Ka~a~~~~L~eLNp~V~V~~~~~~l~~----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf 237 (1093)
+||++++++|+++||+++|+++...+++ ++++++|+||+|.|+++.+..||+.|++++ ||+|++...+ |++.
T Consensus 160 ~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~--iP~i~~~~~~--g~~~ 235 (722)
T PRK07877 160 NKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARR--IPVLMATSDR--GLLD 235 (722)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcC--CCEEEEcCCC--CCcC
Confidence 9999999999999999999999998875 367789999999999999999999999999 9999988555 7664
No 83
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.89 E-value=2.7e-23 Score=246.56 Aligned_cols=172 Identities=17% Similarity=0.189 Sum_probs=142.1
Q ss_pred CCCCCCCCccCCCCCCCCchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceee
Q 001356 67 NSNGADSSIMGLGNGNPSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELW 146 (1093)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~s 146 (1093)
++....+..|++.....+.++.++=---.|++..-+.++|++++|||+|+||||+++|++|+++|||+|||+|+|.|+.+
T Consensus 297 pr~~dL~~~mdP~~la~~avdlnlkLmkWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~S 376 (664)
T TIGR01381 297 PISVDLSKEFDPKRLAERSVDLNLKLMKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYS 376 (664)
T ss_pred ceEechhhhcCHHHHHHHHHHHHHHHHhhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCC
Confidence 33444555555543323333333222223455555669999999999999999999999999999999999999999999
Q ss_pred CCCcceecccCcc---cchHHHHHHHHHHHhCCCcEEEEeeccc-------ch--------------hhhcCCceEEEec
Q 001356 147 DLSSNFIFSEDDV---GKNRALASIQKLQELNNAVAISALTTEL-------TK--------------EKLSDFQAVVFTD 202 (1093)
Q Consensus 147 dL~rqf~~~~~di---Gk~Ka~a~~~~L~eLNp~V~V~~~~~~l-------~~--------------~~l~~~dvVV~~~ 202 (1093)
||+||++++.+|+ |++||++++++|+++||.|+++.+...+ ++ ++++++|+|++|.
T Consensus 377 NL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~t 456 (664)
T TIGR01381 377 NPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLL 456 (664)
T ss_pred ccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECC
Confidence 9999999999999 9999999999999999999999987653 22 4688999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeecC
Q 001356 203 ISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFG 241 (1093)
Q Consensus 203 ~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~g 241 (1093)
|+.+.|..++.+|..++ +|+|.+ ..|+.|++..-.|
T Consensus 457 Dn~esR~L~n~~c~~~~--kplI~a-AlGfdg~lvmrhG 492 (664)
T TIGR01381 457 DSREARWLPTVLCSRHK--KIAISA-ALGFDSYVVMRHG 492 (664)
T ss_pred CCHHHHHHHHHHHHHhC--CCEEEE-EeccceEEEEEec
Confidence 99999999999999999 999998 5899999987543
No 84
>PRK06153 hypothetical protein; Provisional
Probab=99.89 E-value=2.3e-23 Score=235.51 Aligned_cols=129 Identities=17% Similarity=0.149 Sum_probs=118.3
Q ss_pred HHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCccc-ccccCcccc--chHHHHHHHHH
Q 001356 498 KLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQF-LFRDWNIGQ--AKSTVAASAAA 574 (1093)
Q Consensus 498 ~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQf-lf~~~dvG~--~Ka~va~~~l~ 574 (1093)
..|++|++++|+||||||+||.++..||++|| |+|+|+|+|.||.||||||+ +|+.+|+|+ +|++++++++.
T Consensus 169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GV-----geI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~ 243 (393)
T PRK06153 169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPV-----REIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYS 243 (393)
T ss_pred HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCC-----CEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHH
Confidence 57999999999999999999999999999999 99999999999999999998 678999999 99999999999
Q ss_pred HhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecccc
Q 001356 575 LINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTL 638 (1093)
Q Consensus 575 ~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~ 638 (1093)
++|| .|+++..++.+++. +.+.++|+||+|+|+.++|..++++|..+++|+|++|..
T Consensus 244 ~in~--~I~~~~~~I~~~n~-----~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 244 NMRR--GIVPHPEYIDEDNV-----DELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred HhCC--eEEEEeecCCHHHH-----HHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence 9998 56778888865432 356899999999999999999999999999999998763
No 85
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.1e-23 Score=223.41 Aligned_cols=154 Identities=22% Similarity=0.441 Sum_probs=144.9
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccch
Q 001356 486 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 565 (1093)
Q Consensus 486 ~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~K 565 (1093)
.-||||||+||.++|++|+++||+|+|.+|+|.|++|||+++|| |++++.|.-.|....++-|||++.+++|+.|
T Consensus 12 alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV-----~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~r 86 (331)
T KOG2014|consen 12 ALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGV-----GSLTLLDDRLVTEEDVGAQFLISASSVGQTR 86 (331)
T ss_pred HHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhccc-----ceeEEeeccccchhcCCceeEEchhhhchHH
Confidence 67999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccceE
Q 001356 566 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQ 645 (1093)
Q Consensus 566 a~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~v~ 645 (1093)
+++..++++.+||.++|......+.+. +.+||.+||+||-.--..+.+..+|..|++++++++.+++.|+.|++.
T Consensus 87 aeas~erl~~LNPmV~v~~d~edl~ek-----~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F 161 (331)
T KOG2014|consen 87 AEASLERLQDLNPMVDVSVDKEDLSEK-----DEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAF 161 (331)
T ss_pred HHHHHHHHHhcCCceEEEechhhhhhc-----chhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeee
Confidence 999999999999999999998877653 368999999999877788999999999999999999999999999987
Q ss_pred EEeC
Q 001356 646 MVIP 649 (1093)
Q Consensus 646 v~ip 649 (1093)
+-+-
T Consensus 162 ~dL~ 165 (331)
T KOG2014|consen 162 ADLQ 165 (331)
T ss_pred eehh
Confidence 6543
No 86
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.88 E-value=3.3e-22 Score=219.93 Aligned_cols=129 Identities=22% Similarity=0.300 Sum_probs=119.9
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCc--ccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDD--VGKNRALASIQKLQELNNAVAISALTTEL 187 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~d--iGk~Ka~a~~~~L~eLNp~V~V~~~~~~l 187 (1093)
+|+|+|+||||+++|++|+++|||+|+|+|+|.|+.+||+||++++.+| +|++||++++++|+++||+|+|+.+...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999886543
Q ss_pred -----------------c----hhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeecC
Q 001356 188 -----------------T----KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFG 241 (1093)
Q Consensus 188 -----------------~----~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~g 241 (1093)
+ +++++++|+|+++.|+.+.|..++.+|+.++ +|+|. ...|+.|++..-.|
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~--k~~I~-aalGfdg~lvmrhg 152 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKN--KLVIN-AALGFDSYLVMRHG 152 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhC--CcEEE-EEeccceEEEEEeC
Confidence 1 2578899999999999999999999999999 89998 58899999988665
No 87
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.4e-22 Score=225.55 Aligned_cols=188 Identities=22% Similarity=0.341 Sum_probs=162.4
Q ss_pred ccCcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcccc
Q 001356 484 LNSRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQ 563 (1093)
Q Consensus 484 ~~~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~ 563 (1093)
.+.|||||+|+||..+|..|..++||++|||++|||++|||++.|| |.++++|.-.|+.+++..+|+...+++|+
T Consensus 6 ~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gi-----gs~tvvd~~~v~~~d~g~nF~~~~~~~Gk 80 (523)
T KOG2016|consen 6 PKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGI-----GSFTVVDGSKVEQGDLGNNFFLDAKSIGK 80 (523)
T ss_pred hhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhccccc-----ccEEEEecceeeecchhhHHHHHHHhhch
Confidence 4589999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccc
Q 001356 564 AKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN 643 (1093)
Q Consensus 564 ~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~ 643 (1093)
+||.+..+.+++.||+++-......- ++--.-++.||.+|++|+.+-=+.+....+.+.|+.+++||+.+-+.|+.|.
T Consensus 81 srA~a~~e~LqeLN~~V~~~~vee~p--~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~ 158 (523)
T KOG2016|consen 81 SRAEATLEFLQELNPSVSGSFVEESP--DFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGT 158 (523)
T ss_pred hHHHHHHHHHHHhChhhhcCccccCh--hhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEE
Confidence 99999999999999998766655421 1211235789999999998888888999999999999999999999999999
Q ss_pred eEEEeCCcccccCcCCCCCCCCCCcccccCCCCChhhH
Q 001356 644 TQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHC 681 (1093)
Q Consensus 644 v~v~ip~~t~~y~~~~~p~~~~~p~Ct~~~~P~~~~hc 681 (1093)
+++.+.. +.-...+|+.....+..-..||..++|.
T Consensus 159 iRI~ikE---H~iieshPD~~~~DLRL~nPwpeLi~~v 193 (523)
T KOG2016|consen 159 IRISIKE---HTIIESHPDNPLDDLRLDNPWPELIEYV 193 (523)
T ss_pred EEEEeee---ccccccCCCCcccccccCCCcHHHHHHH
Confidence 9998864 3333445655556667777777777765
No 88
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.87 E-value=4.6e-22 Score=224.92 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=133.8
Q ss_pred CCchhhhhhhhhhhc---cC-HHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCc
Q 001356 83 PSDIDEDLHSRQLAV---YG-RETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDD 158 (1093)
Q Consensus 83 ~~~~~~~~YsRQi~l---~G-~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~d 158 (1093)
.+..+.+||+|||.+ || .++|++|++++|+ +||+|+.++..|+. |||+|+|+|+|.|+.+||+ ++++++|
T Consensus 47 l~~~~~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~d 120 (318)
T TIGR03603 47 LTKFNLITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEF 120 (318)
T ss_pred cCHHHHHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhh
Confidence 344556899999999 56 5589999999999 99999999999999 9999999999999999999 8999999
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEeecccchhhhcCCceEEEecCCHHHHHH--HHHHHHhcCCCcceEeeeecceeEEE
Q 001356 159 VGKNRALASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFTDISLEKAVE--FDDYCHNHQPPIAFIKSEVRGLFGNI 236 (1093)
Q Consensus 159 iGk~Ka~a~~~~L~eLNp~V~V~~~~~~l~~~~l~~~dvVV~~~~~~~~~~~--ln~~c~~~~~~ip~I~~~~~G~~G~v 236 (1093)
||++|+++++++|.++||.++|+.. .++++++|+||+|.|++..+.. +|++|.+++ +|||++...|++|++
T Consensus 121 iG~~K~~~a~~~L~~lnp~v~i~~~-----~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~--~PlV~gav~g~~Gqv 193 (318)
T TIGR03603 121 ILKKDIRDLTSNLDALELTKNVDEL-----KDLLKDYNYIIICTEHSNISLLRGLNKLSKETK--KPNTIAFIDGPFVFI 193 (318)
T ss_pred cCcHHHHHHHHHHHHhCCCCEEeeH-----HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHC--CCEEEEEEccCEEEE
Confidence 9999999999999999999999864 3578899999999999998865 999999999 999999999999998
Q ss_pred EeecC
Q 001356 237 FCDFG 241 (1093)
Q Consensus 237 f~d~g 241 (1093)
..-++
T Consensus 194 ~~~~P 198 (318)
T TIGR03603 194 TCTLP 198 (318)
T ss_pred EEEeC
Confidence 86553
No 89
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.86 E-value=1.1e-21 Score=204.15 Aligned_cols=127 Identities=24% Similarity=0.264 Sum_probs=116.3
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecccch
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELTK 189 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l~~ 189 (1093)
+|+|+|+||+|++++++|+++||++|+|+|.|.|+.+||+||+|. .+|+|++||++++++|+++||+++++++...+++
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 699999999999999999999999999999999999999999965 6799999999999999999999999999887765
Q ss_pred ----hhhcCCceEEEecCCHHHHHHHHHHHHhc-CCCcceEeeeecceeEEEEee
Q 001356 190 ----EKLSDFQAVVFTDISLEKAVEFDDYCHNH-QPPIAFIKSEVRGLFGNIFCD 239 (1093)
Q Consensus 190 ----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~-~~~ip~I~~~~~G~~G~vf~d 239 (1093)
++++++|+||.|.++.+.+..+++.|.++ + +|||++...|.+|++...
T Consensus 80 ~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~--ip~i~~~~~~~~~~~~~~ 132 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKN--KPVVCASGMAGFGDSNNI 132 (174)
T ss_pred hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCC--CCEEEEehhhccCCeEEE
Confidence 57889999999999999998888777776 8 999999988888887643
No 90
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.86 E-value=2.2e-21 Score=206.01 Aligned_cols=138 Identities=24% Similarity=0.266 Sum_probs=119.3
Q ss_pred hccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhC
Q 001356 96 AVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN 175 (1093)
Q Consensus 96 ~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLN 175 (1093)
.-+|.++|++|++++|+|+|+||+|+++|++|+++||++++|+|.|.|+.+||+||+| ..+|+|++|+++++++|+++|
T Consensus 9 ~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~~~l~~in 87 (200)
T TIGR02354 9 ARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALKENISEIN 87 (200)
T ss_pred HhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhCCCHHHHHHHHHHHHHC
Confidence 3479999999999999999999999999999999999999999999999999999975 668999999999999999999
Q ss_pred CCcEEEEeecccchh----hhcCCceEEEecCCHHHHHHHH-HHHHhcCCCcceEeeeecceeEEEE
Q 001356 176 NAVAISALTTELTKE----KLSDFQAVVFTDISLEKAVEFD-DYCHNHQPPIAFIKSEVRGLFGNIF 237 (1093)
Q Consensus 176 p~V~V~~~~~~l~~~----~l~~~dvVV~~~~~~~~~~~ln-~~c~~~~~~ip~I~~~~~G~~G~vf 237 (1093)
|+++++++...++++ ++.++|+||.|.++.+.+..++ ++|+.++ .++|.+ ..|+.|+.+
T Consensus 88 p~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~--~~~ii~-~~g~~g~~~ 151 (200)
T TIGR02354 88 PYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYK--DKYLIA-ASGLAGYDD 151 (200)
T ss_pred CCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcC--CCcEEE-EeccccCCC
Confidence 999999998888653 5778999999999999887765 4555555 344443 367777664
No 91
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.84 E-value=1.2e-21 Score=170.77 Aligned_cols=66 Identities=48% Similarity=0.828 Sum_probs=55.9
Q ss_pred eeeccCCCCchhHHHHHHhhhhhhhcCCCCccHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHhcC
Q 001356 892 QFEKDDDTNFHMDLIAGLANMRARNYGIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDG 959 (1093)
Q Consensus 892 ~FeKDDd~n~hidFv~aasNLRA~ny~I~~~~~~~~K~iAG~IIPAIATTtA~VaGl~~lEl~K~l~~ 959 (1093)
+|||||+. |++||+|+|||||++|+||+.|++++++++|+||||++||||+|||++|+|++|++++
T Consensus 1 ~Fd~dd~~--h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~ 66 (67)
T PF02134_consen 1 EFDKDDPL--HLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQN 66 (67)
T ss_dssp ---TTSHH--HHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcHH--HHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhc
Confidence 59999987 9999999999999999999999999999999999999999999999999999999987
No 92
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.1e-21 Score=206.26 Aligned_cols=158 Identities=23% Similarity=0.327 Sum_probs=141.3
Q ss_pred CcchhhhhccCHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccch
Q 001356 486 SRYDAQISVFGSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAK 565 (1093)
Q Consensus 486 ~Rydrqi~l~G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~K 565 (1093)
+...|++.+||.++++||.++-|+||||||+||+++..|+|+|+ ++|.|||+|.|..|.||||......|||.||
T Consensus 55 eqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~-----qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK 129 (430)
T KOG2018|consen 55 EQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGV-----QKIRIVDFDQVSLSSLNRHSCATLADVGTPK 129 (430)
T ss_pred HHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcC-----ceEEEechhhccHhhhhhhhhhhHhhcCCch
Confidence 44557788999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcccc-e
Q 001356 566 STVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAKCN-T 644 (1093)
Q Consensus 566 a~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~G~-v 644 (1093)
+.++++.++++.|+++|++...-++.++++ +-.+.+.|+|+||+||++++.-+-.+|..+++++|.+-..+.+.. +
T Consensus 130 ~~clkkh~skiaPw~eIdar~~l~~~~s~e---dll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPT 206 (430)
T KOG2018|consen 130 VMCLKKHFSKIAPWCEIDARNMLWTSSSEE---DLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPT 206 (430)
T ss_pred HHHHHHHHHhhCccceecHHHhhcCCCchh---hhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCc
Confidence 999999999999999999999988877653 234677999999999999999999999999999997766666654 4
Q ss_pred EEEeCCc
Q 001356 645 QMVIPHL 651 (1093)
Q Consensus 645 ~v~ip~~ 651 (1093)
.+-+.++
T Consensus 207 rv~v~Di 213 (430)
T KOG2018|consen 207 RVNVADI 213 (430)
T ss_pred eeehhhc
Confidence 5555443
No 93
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.84 E-value=6.4e-21 Score=200.79 Aligned_cols=166 Identities=27% Similarity=0.451 Sum_probs=146.2
Q ss_pred cCcchhhhhc--cC-HHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcc
Q 001356 485 NSRYDAQISV--FG-SKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI 561 (1093)
Q Consensus 485 ~~Rydrqi~l--~G-~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dv 561 (1093)
..-|+|.++| .| ....++|+...|.|||.||+|+-.+..|-|+|+ |++++.|.|.||..|+||-| |+++..
T Consensus 59 SNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGI-----GkLlLfDYDkVElANMNRLF-f~P~Qa 132 (422)
T KOG2336|consen 59 SNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGI-----GKLLLFDYDKVELANMNRLF-FQPDQA 132 (422)
T ss_pred CChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCc-----ceEEEeecchhhhhcccccc-cCcccc
Confidence 3569999887 33 346789999999999999999999999999999 99999999999999999976 689999
Q ss_pred ccchHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhh-----------ccCCEEEEccCCHHHHHHHhhccccccc
Q 001356 562 GQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFW-----------ENLNVVVNALDNVNARLYIDQRCLYFQK 630 (1093)
Q Consensus 562 G~~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~-----------~~~DvVi~alDn~~aR~~i~~~c~~~~~ 630 (1093)
|.+|+++|+..|..+||++.|+.|.-++.. ..-| +.|. +..|+|+.|+||++||..+|..|-..+.
T Consensus 133 GlsKv~AA~~TL~~iNPDV~iE~hn~NITT--venF-d~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q 209 (422)
T KOG2336|consen 133 GLSKVDAAVQTLAEINPDVVIEVHNYNITT--VENF-DTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQ 209 (422)
T ss_pred cchHHHHHHHHHHhcCCCeEEEEeecceee--ehhH-HHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999988763 1112 1221 3489999999999999999999999999
Q ss_pred ceEecccc--CcccceEEEeCCcccccCcCC
Q 001356 631 PLLESGTL--GAKCNTQMVIPHLTENYGASR 659 (1093)
Q Consensus 631 pli~sgt~--G~~G~v~v~ip~~t~~y~~~~ 659 (1093)
-+.+||.. ...||+|.++|+.|.||.|-+
T Consensus 210 ~WmESGVSEnAVSGHIQ~i~PGetACFACaP 240 (422)
T KOG2336|consen 210 TWMESGVSENAVSGHIQLIVPGETACFACAP 240 (422)
T ss_pred HHHHccCccccccceeEEecCCccceecccC
Confidence 99999975 478999999999999999953
No 94
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.1e-20 Score=222.97 Aligned_cols=152 Identities=23% Similarity=0.335 Sum_probs=143.2
Q ss_pred hhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCc-----eEEEEeCCcceeeCCCcceecccCcccch
Q 001356 88 EDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVK-----SVTLHDEGVVELWDLSSNFIFSEDDVGKN 162 (1093)
Q Consensus 88 ~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg-----~itLvD~d~V~~sdL~rqf~~~~~diGk~ 162 (1093)
..|||-||+++|..-|+||.+.++++||+|++|||.+||++++||| .|++.|.|.++.|||+|||+|+..|||++
T Consensus 410 gsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~ 489 (1013)
T KOG2012|consen 410 GSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKP 489 (1013)
T ss_pred cCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCch
Confidence 4599999999999999999999999999999999999999999995 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeeccc--------chhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeE
Q 001356 163 RALASIQKLQELNNAVAISALTTEL--------TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 234 (1093)
Q Consensus 163 Ka~a~~~~L~eLNp~V~V~~~~~~l--------~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G 234 (1093)
|+++++.....+||+++|.++...+ +++||.+.|+|..+.|+.+.|.-++.-|.-+. +|++.+++.|.-|
T Consensus 490 KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~--kPLLESGTlGTKG 567 (1013)
T KOG2012|consen 490 KSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYR--KPLLESGTLGTKG 567 (1013)
T ss_pred HHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhc--cchhhccCcCCcc
Confidence 9999999999999999999986653 45799999999999999999999999999999 9999999999999
Q ss_pred EEEeecC
Q 001356 235 NIFCDFG 241 (1093)
Q Consensus 235 ~vf~d~g 241 (1093)
..-+..+
T Consensus 568 ntQVvvP 574 (1013)
T KOG2012|consen 568 NTQVVVP 574 (1013)
T ss_pred ceeEEec
Confidence 7777664
No 95
>PRK06153 hypothetical protein; Provisional
Probab=99.80 E-value=3.1e-19 Score=202.28 Aligned_cols=126 Identities=16% Similarity=0.147 Sum_probs=115.2
Q ss_pred HHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcce-ecccCcccc--hHHHHHHHHHHHhCC
Q 001356 100 RETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNF-IFSEDDVGK--NRALASIQKLQELNN 176 (1093)
Q Consensus 100 ~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf-~~~~~diGk--~Ka~a~~~~L~eLNp 176 (1093)
.+.|+||++++|+||||||+|+.++..|+++||++|+|+|+|.|+.+||+||+ +++++|+|+ +||+++++++.++|+
T Consensus 168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~ 247 (393)
T PRK06153 168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR 247 (393)
T ss_pred HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC
Confidence 46799999999999999999999999999999999999999999999999998 568999999 999999999999998
Q ss_pred CcEEEEeecccchh---hhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeee
Q 001356 177 AVAISALTTELTKE---KLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEV 229 (1093)
Q Consensus 177 ~V~V~~~~~~l~~~---~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~ 229 (1093)
. |.++...++++ .+.++|+||+|.|+.+.+..|+++|++++ ||||.+++
T Consensus 248 ~--I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~g--IP~Id~G~ 299 (393)
T PRK06153 248 G--IVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALG--IPFIDVGM 299 (393)
T ss_pred e--EEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEEeee
Confidence 4 56666666543 57889999999999999999999999999 99999664
No 96
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.5e-19 Score=193.56 Aligned_cols=144 Identities=23% Similarity=0.334 Sum_probs=131.8
Q ss_pred CchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchH
Q 001356 84 SDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNR 163 (1093)
Q Consensus 84 ~~~~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~K 163 (1093)
.++-.+...|++.++|.++|+||+++-|+|||+||+|+.++-.|+++||++|.|+|.|.|+.+.|+||...+-.|+|.||
T Consensus 50 d~lireqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK 129 (430)
T KOG2018|consen 50 DELIREQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPK 129 (430)
T ss_pred HHHHHHHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCch
Confidence 35556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeecccch----h-hhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeee
Q 001356 164 ALASIQKLQELNNAVAISALTTELTK----E-KLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEV 229 (1093)
Q Consensus 164 a~a~~~~L~eLNp~V~V~~~~~~l~~----~-~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~ 229 (1093)
+.+++++++++.|+++|++...-++. + .+.+-|+||+|.|+.++...|-++|+.++ +++|++..
T Consensus 130 ~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~--l~Viss~G 198 (430)
T KOG2018|consen 130 VMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHG--LKVISSTG 198 (430)
T ss_pred HHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcC--CceEeccC
Confidence 99999999999999999987765543 3 34467999999999999999999999999 99998553
No 97
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.76 E-value=2.4e-18 Score=186.60 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=115.5
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCC-----c-----eEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhC
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGV-----K-----SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN 175 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGV-----g-----~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLN 175 (1093)
-+.++|+|||+||+|++++++|+++|+ | +|+|+|+|.|+.+||+||+ |.+.|||++||+++++++...|
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHCCcHHHHHHHHHHHhcc
Confidence 367899999999999999999999973 4 9999999999999999995 6678999999999999999888
Q ss_pred CCcEEEEeecccch-hhhcCCceEEEecCCHHHHHHHHHHHHh---cCCCcceEeeeecceeEEEEe
Q 001356 176 NAVAISALTTELTK-EKLSDFQAVVFTDISLEKAVEFDDYCHN---HQPPIAFIKSEVRGLFGNIFC 238 (1093)
Q Consensus 176 p~V~V~~~~~~l~~-~~l~~~dvVV~~~~~~~~~~~ln~~c~~---~~~~ip~I~~~~~G~~G~vf~ 238 (1093)
.++|+++...+++ +++.++|+||+|.|+.+.|..|++.|++ .+ +|||.+++.+..|+|.+
T Consensus 88 -~~~i~a~~~~~~~~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~--~~~ld~Gn~~~~gqv~~ 151 (244)
T TIGR03736 88 -GTDWTAHPERVERSSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGY--AYWLDLGNRADDGQVIL 151 (244)
T ss_pred -CceEEEEEeeeCchhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccc--cceecccCCCCCCcEEE
Confidence 8999999877754 4567899999999999999999999988 23 69999999999998765
No 98
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.67 E-value=1.4e-16 Score=168.28 Aligned_cols=158 Identities=24% Similarity=0.323 Sum_probs=135.9
Q ss_pred CCchhhhhhhhhhhc--cC-HHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcc
Q 001356 83 PSDIDEDLHSRQLAV--YG-RETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDV 159 (1093)
Q Consensus 83 ~~~~~~~~YsRQi~l--~G-~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~di 159 (1093)
..-.|.+-|||-+.| +| .+..+|++...|.|+|.||+|+-+|..|.++|||++.|+|.|.|++.|++|- ||+++..
T Consensus 54 sEVVDSNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRL-Ff~P~Qa 132 (422)
T KOG2336|consen 54 SEVVDSNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL-FFQPDQA 132 (422)
T ss_pred hhHhcCChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhccccc-ccCcccc
Confidence 466788899999988 66 5778999999999999999999999999999999999999999999999996 5688889
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEeecccch-h----h-----------hcCCceEEEecCCHHHHHHHHHHHHhcCCCcc
Q 001356 160 GKNRALASIQKLQELNNAVAISALTTELTK-E----K-----------LSDFQAVVFTDISLEKAVEFDDYCHNHQPPIA 223 (1093)
Q Consensus 160 Gk~Ka~a~~~~L~eLNp~V~V~~~~~~l~~-~----~-----------l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip 223 (1093)
|.+|++++.+.|.++||+|.++++...++. + | -+..|+|+.|.|+++.|..+|.+|.+.+ .-
T Consensus 133 GlsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~--q~ 210 (422)
T KOG2336|consen 133 GLSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELN--QT 210 (422)
T ss_pred cchHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhh--hH
Confidence 999999999999999999999999887742 1 1 1236999999999999999999999998 67
Q ss_pred eEeeeec--ceeEEEEeecCCc
Q 001356 224 FIKSEVR--GLFGNIFCDFGPE 243 (1093)
Q Consensus 224 ~I~~~~~--G~~G~vf~d~g~~ 243 (1093)
|.-+++. ...|.|....+.+
T Consensus 211 WmESGVSEnAVSGHIQ~i~PGe 232 (422)
T KOG2336|consen 211 WMESGVSENAVSGHIQLIVPGE 232 (422)
T ss_pred HHHccCccccccceeEEecCCc
Confidence 8776654 3567776655443
No 99
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.51 E-value=3.3e-15 Score=119.26 Aligned_cols=45 Identities=49% Similarity=1.046 Sum_probs=40.1
Q ss_pred CcccccCcCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhc
Q 001356 650 HLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLE 694 (1093)
Q Consensus 650 ~~t~~y~~~~~p~~~~~p~Ct~~~~P~~~~hci~wA~~~f~~~f~ 694 (1093)
++|+||+|+.+|+++++|+||+|+||+.++|||+|||++|+++|+
T Consensus 1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHHHHHHHHT
T ss_pred CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHHHHHHHhC
Confidence 479999999999999999999999999999999999999999995
No 100
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.43 E-value=2.2e-13 Score=161.26 Aligned_cols=146 Identities=20% Similarity=0.249 Sum_probs=123.3
Q ss_pred Ccchhhhhcc------CHHHHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccC
Q 001356 486 SRYDAQISVF------GSKLQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDW 559 (1093)
Q Consensus 486 ~Rydrqi~l~------G~~~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~ 559 (1093)
+||..||..| |....++.+++||+|+|.||+|+.++.+|+.+|+ ++|+.+|.|.+ .|||||
T Consensus 104 ERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~-----~~I~~vd~D~v-~SNlnR------- 170 (637)
T TIGR03693 104 DRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGF-----PRFHAIVTDAE-EHALDR------- 170 (637)
T ss_pred HHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCC-----CcEEEEecccc-chhhhH-------
Confidence 8999999885 5566667799999999999999999999999999 99999999999 999999
Q ss_pred ccccchHHHHHHHHHHhCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCH--HHHHHHhhcccccc---cceEe
Q 001356 560 NIGQAKSTVAASAAALINPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNV--NARLYIDQRCLYFQ---KPLLE 634 (1093)
Q Consensus 560 dvG~~Ka~va~~~l~~~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~--~aR~~i~~~c~~~~---~pli~ 634 (1093)
||+. ++.|++ +||+++|+.+.... .+.+ .+.++.+|+||...|+. .--+++|..|++.+ +|++-
T Consensus 171 -IgEl-~e~A~~----~n~~v~v~~i~~~~---~~dl--~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~ 239 (637)
T TIGR03693 171 -IHEL-AEIAEE----TDDALLVQEIDFAE---DQHL--HEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAIC 239 (637)
T ss_pred -HHHH-HHHHHH----hCCCCceEeccCCc---chhH--HHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEE
Confidence 7776 555555 99999999997522 2222 35679999999999955 45679999999999 67778
Q ss_pred ccccCcccceEEEeCCcccccCc
Q 001356 635 SGTLGAKCNTQMVIPHLTENYGA 657 (1093)
Q Consensus 635 sgt~G~~G~v~v~ip~~t~~y~~ 657 (1093)
+|..+..|-+.. |+.|+|+.|
T Consensus 240 ~G~~~liGPlft--PgkTGCWeC 260 (637)
T TIGR03693 240 LKQVGLAGPVFQ--QHGDECFEA 260 (637)
T ss_pred cccceeecceEC--CCCCcHHHH
Confidence 888888887654 999999998
No 101
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.36 E-value=1.3e-12 Score=148.71 Aligned_cols=170 Identities=17% Similarity=0.218 Sum_probs=133.2
Q ss_pred CCCCCccCCCCCCCCchhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCC
Q 001356 70 GADSSIMGLGNGNPSDIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLS 149 (1093)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~ 149 (1093)
-.++..|++........|-++=---.|+.-.-...++.+.++|+.|+|.+||.||+||+-.||++||.+|..+|+.+|--
T Consensus 302 V~Ls~~mDP~~LaessVdLNLkLMkWRlvPdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPV 381 (669)
T KOG2337|consen 302 VDLSDSMDPKKLAESSVDLNLKLMKWRLVPDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPV 381 (669)
T ss_pred EehhhccChHHHhhhhcccchheeeeeecCccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchh
Confidence 33444455433323333333222233444555668999999999999999999999999999999999999999999999
Q ss_pred cceecccCcc---cchHHHHHHHHHHHhCCCcEEEEeecccc---------------------hhhhcCCceEEEecCCH
Q 001356 150 SNFIFSEDDV---GKNRALASIQKLQELNNAVAISALTTELT---------------------KEKLSDFQAVVFTDISL 205 (1093)
Q Consensus 150 rqf~~~~~di---Gk~Ka~a~~~~L~eLNp~V~V~~~~~~l~---------------------~~~l~~~dvVV~~~~~~ 205 (1093)
||-+++-+|. |++||++++++|++++|.++-..+...+. +++++..|+|++.+|+.
T Consensus 382 RQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsR 461 (669)
T KOG2337|consen 382 RQSLYTFEDCLGGGRPKAETAAQRLKEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSR 461 (669)
T ss_pred hhhhhhhhhhhccCCcchHHHHHHHHHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccc
Confidence 9999999997 49999999999999999988777654431 24688899999999999
Q ss_pred HHHHHHHHHHHhcCCCcceEeeeecceeEEEEeecCC
Q 001356 206 EKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGP 242 (1093)
Q Consensus 206 ~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~g~ 242 (1093)
+.|..-.-+|-.++ +++.....|+..|+..-.|.
T Consensus 462 ESRWLPtll~a~~~---KivINaALGFDsylVMRHG~ 495 (669)
T KOG2337|consen 462 ESRWLPTLLAAAKN---KIVINAALGFDSYLVMRHGT 495 (669)
T ss_pred hhhhhHHHHHhhhc---ceEeeeecccceeEEEecCC
Confidence 99998888888887 44445678998888876664
No 102
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.28 E-value=6.5e-12 Score=143.06 Aligned_cols=133 Identities=21% Similarity=0.287 Sum_probs=113.6
Q ss_pred HHHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCcc---ccchHHHHHHHHHH
Q 001356 499 LQKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNI---GQAKSTVAASAAAL 575 (1093)
Q Consensus 499 ~q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dv---G~~Ka~va~~~l~~ 575 (1093)
..+++.+.|+++.|||.+||.+|++|..=|| .+||.+|..+|..||--||.||+-+|- |++||++|+++|++
T Consensus 334 nLd~is~~KcLLLGAGTLGC~VAR~Ll~WGv-----RhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~ 408 (669)
T KOG2337|consen 334 NLDIISQTKCLLLGAGTLGCNVARNLLGWGV-----RHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKE 408 (669)
T ss_pred chhhhhcceeEEecCcccchHHHHHHHhhcc-----ceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHH
Confidence 4689999999999999999999999999999 999999999999999999999998885 59999999999999
Q ss_pred hCCCCEEEEEecccC-------ccc-cccc-----hhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecc
Q 001356 576 INPHLNTEALQIRAN-------PET-ENVF-----NDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 636 (1093)
Q Consensus 576 ~np~~~i~~~~~~v~-------~~~-~~~~-----~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sg 636 (1093)
|+|.++-..+.-.|. +.. +... -+++.+..|+|+-.+|..++|..=.-+|...+|-+|++.
T Consensus 409 IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA 482 (669)
T KOG2337|consen 409 IFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA 482 (669)
T ss_pred hCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee
Confidence 999998777765442 110 0000 035688999999999999999988888888888888753
No 103
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.11 E-value=4.4e-10 Score=133.61 Aligned_cols=137 Identities=13% Similarity=0.149 Sum_probs=112.6
Q ss_pred CCchhhhhhhhhhhcc------CHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceeccc
Q 001356 83 PSDIDEDLHSRQLAVY------GRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSE 156 (1093)
Q Consensus 83 ~~~~~~~~YsRQi~l~------G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~ 156 (1093)
.+....+||..||.++ |.+..++.++++|+|+|+||+|+.++.+|+.+|+++|..+|.|.+ .+|++|
T Consensus 98 L~~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR------ 170 (637)
T TIGR03693 98 LESALLDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR------ 170 (637)
T ss_pred CCHHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH------
Confidence 3455669999999994 677778889999999999999999999999999999999999999 999999
Q ss_pred CcccchHHHHHHHHHHHhCCCcEEEEeecccch---hhhcCCceEEEecC--CHHHHHHHHHHHHhcCCCcceEeeeecc
Q 001356 157 DDVGKNRALASIQKLQELNNAVAISALTTELTK---EKLSDFQAVVFTDI--SLEKAVEFDDYCHNHQPPIAFIKSEVRG 231 (1093)
Q Consensus 157 ~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l~~---~~l~~~dvVV~~~~--~~~~~~~ln~~c~~~~~~ip~I~~~~~G 231 (1093)
||+. ++.+.+ .||.|.|+.++...++ +.++++|+||+..+ ..+....+|+.|.+.| .+||-+-..|
T Consensus 171 --IgEl-~e~A~~----~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkeg--k~~IPai~~G 241 (637)
T TIGR03693 171 --IHEL-AEIAEE----TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEG--KGFIPAICLK 241 (637)
T ss_pred --HHHH-HHHHHH----hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcC--CCeEEEEEcc
Confidence 7766 554444 9999999988764333 57889999999887 5567889999999999 6666655555
Q ss_pred eeEE
Q 001356 232 LFGN 235 (1093)
Q Consensus 232 ~~G~ 235 (1093)
..+.
T Consensus 242 ~~~l 245 (637)
T TIGR03693 242 QVGL 245 (637)
T ss_pred ccee
Confidence 4443
No 104
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.34 E-value=1.8e-06 Score=86.02 Aligned_cols=121 Identities=21% Similarity=0.257 Sum_probs=98.5
Q ss_pred cCeEEEEcCChhHHHHHHHHH---HhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 108 ASNILISGMQGLGAEIAKNLI---LAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLv---laGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
...|.++|||-+|.-+|-+|. +.|+.+|.++|+..|++.|+-- ..--.-+|.+|++-++ +|..-.+.-.|++..
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiih--rr~Ga~~GEyKv~Fi~-rl~~~~f~r~V~a~p 94 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIH--RRLGAKVGEYKVDFIK-RLGRVHFGRRVEAFP 94 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHH--HHhCCCcchhHHHHHH-HhCcCCCCceeeccc
Confidence 457999999999999999998 7899999999999999999832 2223568999998754 666777888999999
Q ss_pred cccchhhhcC--CceEEEec---CCHHHHHHHHHHHHhcCCCcceEeeeecceeEE
Q 001356 185 TELTKEKLSD--FQAVVFTD---ISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGN 235 (1093)
Q Consensus 185 ~~l~~~~l~~--~dvVV~~~---~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~ 235 (1093)
+.++.++++. =||||.|. +..+....|.++|++.| +.-|+ +.|.||+
T Consensus 95 E~it~dNlhll~gDVvvi~IAGGdT~PvTaaii~ya~~rG--~~Tis--T~GVFGi 146 (217)
T COG4015 95 ENITKDNLHLLKGDVVVICIAGGDTIPVTAAIINYAKERG--IKTIS--TNGVFGI 146 (217)
T ss_pred ccccccchhhhcCCEEEEEecCCCcchhHHHHHHHHHHcC--ceEee--cCceeec
Confidence 9998876543 28887764 46777888999999999 77766 7888886
No 105
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=98.24 E-value=5.8e-07 Score=78.79 Aligned_cols=50 Identities=38% Similarity=0.703 Sum_probs=36.9
Q ss_pred cccCCcchhHHHHHHHHHHHHHHcCCCCCCCCCChhHHHHhhhhccCCCCCCCCC
Q 001356 791 QFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKEN 845 (1093)
Q Consensus 791 ~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (1093)
+||.+|+.|++||+++|+|||++|||+ + .+...+.+++ +..+|.|.|+.+
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~-~---~~~~~~~~i~-~~iIP~~~~t~~ 50 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIP-P---LDREEIKKIA-GNIIPAFAPTNA 50 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT-------S-HHHHHHHH-TTEE-B-HHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCC-c---ccHHHHHHHh-cCcCCCcCCchh
Confidence 599999999999999999999999999 4 4677888888 888999988764
No 106
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.50 E-value=0.0013 Score=70.65 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=71.9
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
.|++.+|+|||.|.+|...++.|...| .+|++++.+.. +.+.++.+.-.+....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~~-------------------------~~l~~l~~~~~i~~~~ 60 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPELT-------------------------ENLVKLVEEGKIRWKQ 60 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 478899999999999999999999999 68999975311 1222333323455555
Q ss_pred cccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecc
Q 001356 185 TELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRG 231 (1093)
Q Consensus 185 ~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G 231 (1093)
..+.+..+.++|+||.++++.+.-..+.+.|+ .+ +++-.++.--
T Consensus 61 ~~~~~~~l~~adlViaaT~d~elN~~i~~~a~-~~--~lvn~~d~~~ 104 (202)
T PRK06718 61 KEFEPSDIVDAFLVIAATNDPRVNEQVKEDLP-EN--ALFNVITDAE 104 (202)
T ss_pred cCCChhhcCCceEEEEcCCCHHHHHHHHHHHH-hC--CcEEECCCCc
Confidence 66667788899999999999888888999994 46 5555544333
No 107
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=97.49 E-value=0.00012 Score=67.04 Aligned_cols=62 Identities=26% Similarity=0.353 Sum_probs=49.1
Q ss_pred EEeCCCCcHHHHHHHHHHc---CCceeeeecCCceeeccCCc----chhhcccCcHHHHHHh-----hhcCCCC
Q 001356 1002 WILRDNPTLRQLLQWLQDK---GLNAYSISYGSCLLFNSMFP----RHKERMDKKVVDLVRD-----VAKAELP 1063 (1093)
Q Consensus 1002 ~~v~~~~TL~~li~~~~~~---~l~~~~i~~g~~~LY~~~~~----~~~~~l~~~l~~l~~~-----~~~~~~~ 1063 (1093)
++++.+.||++||+.+.++ .+..++|+.+.+-||....| .++.||+|+|.||+.. |++..+|
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL~~~g~ei~VtD~~lp 74 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKELLSDGEEITVTDPTLP 74 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTTHHSSEEEEEEETTES
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHHhcCCCEEEEECCCCc
Confidence 3567789999999999998 88889999999999999876 4578999999999765 4554554
No 108
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.44 E-value=0.0018 Score=69.65 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=79.7
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
|++.+|+|||.|.+|..-++.|...|. +||+++++.- +.+.++-..-+|+....
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~-------------------------~~l~~l~~~~~i~~~~~ 60 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE-------------------------SELTLLAEQGGITWLAR 60 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHHcCCEEEEeC
Confidence 678899999999999999999999996 8999987421 11222222225667677
Q ss_pred ccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEE
Q 001356 186 ELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIF 237 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf 237 (1093)
.+..+.+.++++||.++++.+....+-..|++.+ +++-.++.-.+..++|
T Consensus 61 ~~~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~--ilvn~~d~~e~~~f~~ 110 (205)
T TIGR01470 61 CFDADILEGAFLVIAATDDEELNRRVAHAARARG--VPVNVVDDPELCSFIF 110 (205)
T ss_pred CCCHHHhCCcEEEEECCCCHHHHHHHHHHHHHcC--CEEEECCCcccCeEEE
Confidence 7777788999999999988888889999999999 7876666555544444
No 109
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.29 E-value=0.00089 Score=67.12 Aligned_cols=78 Identities=26% Similarity=0.321 Sum_probs=58.9
Q ss_pred HHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001356 104 RRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 183 (1093)
Q Consensus 104 ~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~ 183 (1093)
..+++++|+|+|+||.|..+++.|...|+++|+|+..+ ..|++.+++.+ +...+...
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt-------------------~~ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT-------------------PERAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS-------------------HHHHHHHHHHH----TGCSEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC-------------------HHHHHHHHHHc----Ccccccee
Confidence 36889999999999999999999999999999998742 23677666666 55555554
Q ss_pred ecccchhhhcCCceEEEecCC
Q 001356 184 TTELTKEKLSDFQAVVFTDIS 204 (1093)
Q Consensus 184 ~~~l~~~~l~~~dvVV~~~~~ 204 (1093)
...--.+.+.++|+||.|+..
T Consensus 65 ~~~~~~~~~~~~DivI~aT~~ 85 (135)
T PF01488_consen 65 PLEDLEEALQEADIVINATPS 85 (135)
T ss_dssp EGGGHCHHHHTESEEEE-SST
T ss_pred eHHHHHHHHhhCCeEEEecCC
Confidence 432223567899999998863
No 110
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.28 E-value=0.00027 Score=75.24 Aligned_cols=60 Identities=22% Similarity=0.270 Sum_probs=46.8
Q ss_pred CHHHHHHHhcCcEEEEccCcchHH-HHHHHHHcccccC-CCcceEEe---cCCccccccCCcccc
Q 001356 496 GSKLQKKLEEAKVFVVGSGALGCE-FLKNLALMGVSCG-NQGKLTIT---DDDVIEKSNLSRQFL 555 (1093)
Q Consensus 496 G~~~q~~L~~~~VlivG~GgiG~e-~lknLa~~Gv~~~-~~g~i~li---D~D~Ie~sNLnRQfl 555 (1093)
+...+++|++.+|.|+|.|+.|++ ++..|+.+|++.. ....++|| |.+..+.+|+|||++
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~l 160 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRAL 160 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHHH
Confidence 346789999999999999999999 9999999999443 23444666 667777777777665
No 111
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.18 E-value=0.00091 Score=77.86 Aligned_cols=99 Identities=24% Similarity=0.338 Sum_probs=70.6
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEEE
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 585 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~ 585 (1093)
.+|+|+|||+||+.++.+||+.|. ++|+|.|. +...++++...... +++++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d-----~~V~iAdR-----------------------s~~~~~~i~~~~~~-~v~~~ 52 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGD-----GEVTIADR-----------------------SKEKCARIAELIGG-KVEAL 52 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCC-----ceEEEEeC-----------------------CHHHHHHHHhhccc-cceeE
Confidence 589999999999999999999998 89999982 11122223222211 56666
Q ss_pred ecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccc
Q 001356 586 QIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGT 637 (1093)
Q Consensus 586 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt 637 (1093)
.-++.... .+ .+.++++|+||+|+.-.-.+ .+-+.|.+.++++++...
T Consensus 53 ~vD~~d~~-al--~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 53 QVDAADVD-AL--VALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSY 100 (389)
T ss_pred EecccChH-HH--HHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEccc
Confidence 65554321 11 35678899999999988877 455689999999997543
No 112
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.05 E-value=0.002 Score=72.83 Aligned_cols=76 Identities=25% Similarity=0.305 Sum_probs=59.9
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
++.++|+|+|+||.|..++..|+..|+++|+|+|.+ ..|++.+++.+.+..+.+.+....
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~- 184 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS- 184 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence 556899999999999999999999999999999864 258999999998888765553322
Q ss_pred ccchhhhcCCceEEEec
Q 001356 186 ELTKEKLSDFQAVVFTD 202 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~ 202 (1093)
.+ .+.+.++|+||.|+
T Consensus 185 ~~-~~~~~~aDiVInaT 200 (284)
T PRK12549 185 DL-AAALAAADGLVHAT 200 (284)
T ss_pred ch-HhhhCCCCEEEECC
Confidence 11 23456788888886
No 113
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.04 E-value=0.0086 Score=61.72 Aligned_cols=86 Identities=16% Similarity=0.198 Sum_probs=67.0
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
.|++.+|+|+|.|.+|...++.|...|. .+++++++.. +.+.++. .+....
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~-------------------------~~l~~l~---~i~~~~ 60 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEIC-------------------------KEMKELP---YITWKQ 60 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccC-------------------------HHHHhcc---CcEEEe
Confidence 5788999999999999999999999997 8888875421 1222221 234455
Q ss_pred cccchhhhcCCceEEEecCCHHHHHHHHHHHHhcC
Q 001356 185 TELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQ 219 (1093)
Q Consensus 185 ~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~ 219 (1093)
..+.++.+.++|+||.++++.+.-..+...|++++
T Consensus 61 ~~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~~ 95 (157)
T PRK06719 61 KTFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDFQ 95 (157)
T ss_pred cccChhcCCCceEEEECCCCHHHHHHHHHHHHHCC
Confidence 66777788999999999999888888889998854
No 114
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.03 E-value=0.0021 Score=61.38 Aligned_cols=89 Identities=19% Similarity=0.161 Sum_probs=65.2
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
.|++.+|+|||.|.+|..-++.|..+| .++|++.++. + .++ ..++ ...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~-------------------------~~~---~~i~--~~~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-E-------------------------FSE---GLIQ--LIR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-H-------------------------HHH---TSCE--EEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-h-------------------------hhh---hHHH--HHh
Confidence 478899999999999999999999999 6999998754 0 000 2223 334
Q ss_pred cccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeee
Q 001356 185 TELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSE 228 (1093)
Q Consensus 185 ~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~ 228 (1093)
..+. +.+.++++|+.++++.+....+-+.|++++ +|+-.++
T Consensus 52 ~~~~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~--i~vn~~D 92 (103)
T PF13241_consen 52 REFE-EDLDGADLVFAATDDPELNEAIYADARARG--ILVNVVD 92 (103)
T ss_dssp SS-G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTT--SEEEETT
T ss_pred hhHH-HHHhhheEEEecCCCHHHHHHHHHHHhhCC--EEEEECC
Confidence 4454 568899999999999998999999999999 7766544
No 115
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0031 Score=73.52 Aligned_cols=98 Identities=19% Similarity=0.301 Sum_probs=70.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeeccc-
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL- 187 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l- 187 (1093)
.+|+|+|+|++|+.+|.+|+..|.+.|+|.|... ..+.++.+.... ++++..-+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-----------------------~~~~~i~~~~~~-~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-----------------------EKCARIAELIGG-KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-----------------------HHHHHHHhhccc-cceeEEeccc
Confidence 5799999999999999999999999999998521 122333333321 444444333
Q ss_pred ----chhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeeccee
Q 001356 188 ----TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLF 233 (1093)
Q Consensus 188 ----~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~ 233 (1093)
..+.++++|+||.+....-.. .+-+.|-+.| +.++......-.
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~g--v~yvDts~~~~~ 104 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVDL-TILKACIKTG--VDYVDTSYYEEP 104 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhC--CCEEEcccCCch
Confidence 236889999999998654444 7888999999 888886655444
No 116
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.97 E-value=0.0019 Score=73.07 Aligned_cols=76 Identities=24% Similarity=0.259 Sum_probs=58.6
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEE
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 582 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i 582 (1093)
+..++|+|+|+||.|..++..|+.+|+ ++|+|+|.+ ..|++.+++.+...++.+.+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~-----~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~ 180 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGV-----ERLTIFDVD-------------------PARAAALADELNARFPAARA 180 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEE
Confidence 456799999999999999999999999 899999855 25888888888877776544
Q ss_pred EEEecccCccccccchhhhhccCCEEEEcc
Q 001356 583 EALQIRANPETENVFNDTFWENLNVVVNAL 612 (1093)
Q Consensus 583 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~al 612 (1093)
..... + .+.+.++|+||+|+
T Consensus 181 ~~~~~--------~--~~~~~~aDiVInaT 200 (284)
T PRK12549 181 TAGSD--------L--AAALAAADGLVHAT 200 (284)
T ss_pred Eeccc--------h--HhhhCCCCEEEECC
Confidence 33211 0 12346799999996
No 117
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.93 E-value=0.013 Score=63.73 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=77.1
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
++++.+|||||.|.+|..=++.|..+|. +||++-++.. +.|.++-..-.++...
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~-------------------------~el~~l~~~~~i~~~~ 75 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFS-------------------------KEFLDLKKYGNLKLIK 75 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 5668899999999999999999999995 7999866421 1222222233466667
Q ss_pred cccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecce
Q 001356 185 TELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGL 232 (1093)
Q Consensus 185 ~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~ 232 (1093)
..+.++.+.++++||+|+++.+.-..+.+.|++.+ +++..++.-..
T Consensus 76 r~~~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~--~lvn~vd~p~~ 121 (223)
T PRK05562 76 GNYDKEFIKDKHLIVIATDDEKLNNKIRKHCDRLY--KLYIDCSDYKK 121 (223)
T ss_pred CCCChHHhCCCcEEEECCCCHHHHHHHHHHHHHcC--CeEEEcCCccc
Confidence 77788889999999999999999999999999998 77776654444
No 118
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=96.92 E-value=0.0019 Score=64.90 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=94.0
Q ss_pred cCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEE
Q 001356 505 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 584 (1093)
Q Consensus 505 ~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~ 584 (1093)
.-.|.++|||-+|--++-+|... +.|.-.+|.++|..+||..++----+ -.-+|.+|++-+++ +-+-.+.-+|++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~--HRGGperi~v~Dgqrve~dDiihrr~--Ga~~GEyKv~Fi~r-l~~~~f~r~V~a 92 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEV--HRGGPERIYVFDGQRVEEDDIIHRRL--GAKVGEYKVDFIKR-LGRVHFGRRVEA 92 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHH--hcCCCeEEEEecCcccCchhhHHHHh--CCCcchhHHHHHHH-hCcCCCCceeec
Confidence 34699999999999998888654 33333899999999999998743222 23689999988765 334456679999
Q ss_pred EecccCccccccchhhhhccCCEEEEcc---CCHHHHHHHhhcccccccceEeccccCcccc
Q 001356 585 LQIRANPETENVFNDTFWENLNVVVNAL---DNVNARLYIDQRCLYFQKPLLESGTLGAKCN 643 (1093)
Q Consensus 585 ~~~~v~~~~~~~~~~~f~~~~DvVi~al---Dn~~aR~~i~~~c~~~~~pli~sgt~G~~G~ 643 (1093)
+.+.++.++.+.+ .. |+|+.|+ |....-..+-++|.+.++.-| +|.|..|.
T Consensus 93 ~pE~it~dNlhll-----~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~Ti--sT~GVFGi 146 (217)
T COG4015 93 FPENITKDNLHLL-----KG-DVVVICIAGGDTIPVTAAIINYAKERGIKTI--STNGVFGI 146 (217)
T ss_pred ccccccccchhhh-----cC-CEEEEEecCCCcchhHHHHHHHHHHcCceEe--ecCceeec
Confidence 9999998776554 33 7777664 777888889999999999888 35555543
No 119
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.79 E-value=0.0034 Score=62.97 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=56.1
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCC
Q 001356 501 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 580 (1093)
Q Consensus 501 ~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~ 580 (1093)
..+++++|+|+|+||.|..+++.|+..|+ .+|+|+. |. ..|++.+++.+ +..
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~-----~~i~i~n----------Rt---------~~ra~~l~~~~----~~~ 59 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGA-----KEITIVN----------RT---------PERAEALAEEF----GGV 59 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTS-----SEEEEEE----------SS---------HHHHHHHHHHH----TGC
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCC-----CEEEEEE----------CC---------HHHHHHHHHHc----Ccc
Confidence 36889999999999999999999999999 8899985 21 24566666555 444
Q ss_pred EEEEEecccCccccccchhhhhccCCEEEEccCCH
Q 001356 581 NTEALQIRANPETENVFNDTFWENLNVVVNALDNV 615 (1093)
Q Consensus 581 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~ 615 (1093)
.+..+.- +.+ .+.+.++|+||+|+.-.
T Consensus 60 ~~~~~~~------~~~--~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 60 NIEAIPL------EDL--EEALQEADIVINATPSG 86 (135)
T ss_dssp SEEEEEG------GGH--CHHHHTESEEEE-SSTT
T ss_pred ccceeeH------HHH--HHHHhhCCeEEEecCCC
Confidence 4444431 111 13567899999998654
No 120
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.72 E-value=0.0059 Score=65.55 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=63.9
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCE
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 581 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~ 581 (1093)
.|.+++|+|||.|.+|...++.|...|. +++||+.+. .+ .+..+.+.-.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga------~V~VIs~~~------~~-------------------~l~~l~~~~~ 55 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGA------HIVVISPEL------TE-------------------NLVKLVEEGK 55 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------eEEEEcCCC------CH-------------------HHHHHHhCCC
Confidence 4788999999999999999999999996 899997431 00 1111111112
Q ss_pred EEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceE
Q 001356 582 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 633 (1093)
Q Consensus 582 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli 633 (1093)
+...... |....+..+|+||.|+|+.+.-..+...| ..++++-
T Consensus 56 i~~~~~~--------~~~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lvn 98 (202)
T PRK06718 56 IRWKQKE--------FEPSDIVDAFLVIAATNDPRVNEQVKEDL-PENALFN 98 (202)
T ss_pred EEEEecC--------CChhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcEE
Confidence 3332221 22345678999999999999999999999 4566543
No 121
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.28 E-value=0.0054 Score=58.51 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=62.7
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCE
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 581 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~ 581 (1093)
.|++.+|+|||.|.+|..=++.|...|. +++++..+. +... ..++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA------~v~vis~~~-~~~~----------------------------~~i~ 48 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGA------KVTVISPEI-EFSE----------------------------GLIQ 48 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTB------EEEEEESSE-HHHH----------------------------TSCE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECCch-hhhh----------------------------hHHH
Confidence 4788999999999999999999999996 999998775 1000 1122
Q ss_pred EEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEe
Q 001356 582 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLE 634 (1093)
Q Consensus 582 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~ 634 (1093)
.....+ . ..+.++++|+.|+|+...-..+-..|...++|+-.
T Consensus 49 --~~~~~~--------~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~ 90 (103)
T PF13241_consen 49 --LIRREF--------E-EDLDGADLVFAATDDPELNEAIYADARARGILVNV 90 (103)
T ss_dssp --EEESS---------G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEE
T ss_pred --HHhhhH--------H-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEE
Confidence 222222 1 23578999999999999999999999999998764
No 122
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.22 E-value=0.018 Score=59.26 Aligned_cols=85 Identities=15% Similarity=0.273 Sum_probs=61.8
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCE
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 581 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~ 581 (1093)
.|++.+|+|||.|.+|...++.|...|. +++||+.+..+. +..+ +.+.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga------~V~VIsp~~~~~-------------------------l~~l-~~i~ 57 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA------FVTVVSPEICKE-------------------------MKEL-PYIT 57 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCccCHH-------------------------HHhc-cCcE
Confidence 5788999999999999999999999997 999997653211 0111 1112
Q ss_pred EEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc
Q 001356 582 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF 628 (1093)
Q Consensus 582 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~ 628 (1093)
.... .|.+..+.++|+||.|+||.+.-..+...|...
T Consensus 58 --~~~~--------~~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 58 --WKQK--------TFSNDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred --EEec--------ccChhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 2222 233445688999999999999998888888763
No 123
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.19 E-value=0.018 Score=62.00 Aligned_cols=95 Identities=18% Similarity=0.145 Sum_probs=70.1
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEE
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 582 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i 582 (1093)
|++++|+|||.|.+|..-++.|...|. +++|++++.- ..+.+ +.. .-+|
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga------~VtVvsp~~~---------------------~~l~~-l~~---~~~i 55 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA------QLRVIAEELE---------------------SELTL-LAE---QGGI 55 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC------EEEEEcCCCC---------------------HHHHH-HHH---cCCE
Confidence 678899999999999999999999996 9999986421 00111 111 1145
Q ss_pred EEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecc
Q 001356 583 EALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 636 (1093)
Q Consensus 583 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sg 636 (1093)
+.+...+. ...+.++++||.|+|+.+.-..+-..|...++|+-.++
T Consensus 56 ~~~~~~~~--------~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d 101 (205)
T TIGR01470 56 TWLARCFD--------ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVD 101 (205)
T ss_pred EEEeCCCC--------HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 55544332 34567899999999999888899999999999985443
No 124
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.93 E-value=0.072 Score=64.36 Aligned_cols=105 Identities=11% Similarity=0.100 Sum_probs=80.3
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
.|++.+|+|||.|.++..=++.|..+|. +||++-++.. +.|+++-..-+|+...
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------------------~~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------------------PQFTAWADAGMLTLVE 62 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 5789999999999999999999999997 7888754311 1233333344567777
Q ss_pred cccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEE
Q 001356 185 TELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIF 237 (1093)
Q Consensus 185 ~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf 237 (1093)
..+.++.+.++++||.|+++.+.-.+|.+.|++.+ +++-.++.-....++|
T Consensus 63 ~~~~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~--~lvN~~d~~~~~~f~~ 113 (457)
T PRK10637 63 GPFDESLLDTCWLAIAATDDDAVNQRVSEAAEARR--IFCNVVDAPKAASFIM 113 (457)
T ss_pred CCCChHHhCCCEEEEECCCCHHHhHHHHHHHHHcC--cEEEECCCcccCeEEE
Confidence 77778889999999999999999999999999999 7766665544433433
No 125
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.87 E-value=0.023 Score=64.16 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=53.1
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
++.++|+|+|+||.|..++-.|+..|+++|+|++.+. .||+++++++.+..+...+.....
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~~~ 185 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGVDA 185 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEecCH
Confidence 4468999999999999999999999999999997531 378888877765444322322110
Q ss_pred ccchhhhcCCceEEEec
Q 001356 186 ELTKEKLSDFQAVVFTD 202 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~ 202 (1093)
.-..+.+..+|+||.|+
T Consensus 186 ~~~~~~~~~~divINaT 202 (283)
T PRK14027 186 RGIEDVIAAADGVVNAT 202 (283)
T ss_pred hHHHHHHhhcCEEEEcC
Confidence 00012345677777665
No 126
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.80 E-value=0.053 Score=58.52 Aligned_cols=105 Identities=21% Similarity=0.191 Sum_probs=77.1
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
.|++++|+|||.|.+|..=++.|+.+|. +++++-++. .+.+..+-...++....
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~-------------------------~~el~~~~~~~~i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF-------------------------EPELKALIEEGKIKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc-------------------------cHHHHHHHHhcCcchhh
Confidence 5778899999999999999999999998 566665422 01222222222355555
Q ss_pred cccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEEE
Q 001356 185 TELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIF 237 (1093)
Q Consensus 185 ~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf 237 (1093)
..+..+.+..+++||.++++.+.-.++.+.|++++ +++-.++--.+.-++|
T Consensus 63 ~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~--i~vNv~D~p~~~~f~~ 113 (210)
T COG1648 63 REFDAEDLDDAFLVIAATDDEELNERIAKAARERR--ILVNVVDDPELCDFIF 113 (210)
T ss_pred cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhC--CceeccCCcccCceec
Confidence 66777777789999999999999999999999999 7777666555533333
No 127
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.61 E-value=0.038 Score=60.09 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=70.4
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCE
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 581 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~ 581 (1093)
.+++.+|+|||.|.++..=++.|...|. +|+||-++.- + ++ .+ + ...+ +
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA------~VtVVap~i~------------~-el--------~~-l-~~~~--~ 70 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC------YVYILSKKFS------------K-EF--------LD-L-KKYG--N 70 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCCC------------H-HH--------HH-H-HhCC--C
Confidence 4668899999999999999999999986 9999976521 0 00 00 1 0122 2
Q ss_pred EEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccc
Q 001356 582 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGT 637 (1093)
Q Consensus 582 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt 637 (1093)
|+.+...+ .+..+.++++||.|+|+.+.-..+...|...++++..+..
T Consensus 71 i~~~~r~~--------~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 71 LKLIKGNY--------DKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred EEEEeCCC--------ChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 44444333 2445688999999999999999999999999888775433
No 128
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.35 E-value=0.025 Score=66.71 Aligned_cols=97 Identities=20% Similarity=0.289 Sum_probs=63.7
Q ss_pred EEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEEEec
Q 001356 508 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQI 587 (1093)
Q Consensus 508 VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~~~ 587 (1093)
|+|+|+|.+|..+++.|++.+-. .++++.|.+. .|++.+++.+ ...+++...-
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~----~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~ 53 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPF----EEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQV 53 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-----EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCC----CcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEE
Confidence 78999999999999999998740 3889887332 2322232222 3346666666
Q ss_pred ccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEec
Q 001356 588 RANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLES 635 (1093)
Q Consensus 588 ~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~s 635 (1093)
++.... .+ .++++++|+||+|+... .-..+-+.|.+.++++++.
T Consensus 54 d~~~~~-~l--~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 54 DVNDPE-SL--AELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp -TTTHH-HH--HHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred ecCCHH-HH--HHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 555322 22 46789999999999877 5557888999999999993
No 129
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.27 E-value=0.06 Score=54.45 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=54.8
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHhCCc-eEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 109 SNILISGM-QGLGAEIAKNLILAGVK-SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 109 s~VlIiG~-gglGseiaKnLvlaGVg-~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
.+|.|||+ |.+|+.+|-.|++.|+. +|.|+|.+ ..+++..+.-|....+..........
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~ 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPVRITS 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-------------------cccceeeehhhhhhhhhccccccccc
Confidence 37999999 99999999999999985 49999852 23666666666666544433322222
Q ss_pred cchhhhcCCceEEEecC
Q 001356 187 LTKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~~ 203 (1093)
-+.+.+++.|+||.+..
T Consensus 62 ~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 62 GDYEALKDADIVVITAG 78 (141)
T ss_dssp SSGGGGTTESEEEETTS
T ss_pred ccccccccccEEEEecc
Confidence 34567889999999865
No 130
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.99 E-value=0.053 Score=61.33 Aligned_cols=75 Identities=16% Similarity=0.086 Sum_probs=53.1
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee-
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT- 184 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~- 184 (1093)
++.++|+|+|+||.|..++..|...|+++|+|++.+ ..||+.+++++..... +....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~~---~~~~~~ 180 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVGV---ITRLEG 180 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcCc---ceeccc
Confidence 567899999999999999999999999999999742 2377777777644321 11111
Q ss_pred -cccchhhhcCCceEEEecC
Q 001356 185 -TELTKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 185 -~~l~~~~l~~~dvVV~~~~ 203 (1093)
.++ .+.+.++|+||.|+.
T Consensus 181 ~~~~-~~~~~~~DiVInaTp 199 (282)
T TIGR01809 181 DSGG-LAIEKAAEVLVSTVP 199 (282)
T ss_pred hhhh-hhcccCCCEEEECCC
Confidence 111 134567899998863
No 131
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.97 E-value=0.087 Score=59.80 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=45.2
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEE
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAIS 181 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~ 181 (1093)
+..++|+|+|+||+|..++..|+..|+++|+|++.+.- ...|++.+++.+.+..+.+.+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~ 183 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVN 183 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeE
Confidence 56789999999999999999999999999999875210 1136777777776655544443
No 132
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.87 E-value=0.058 Score=61.01 Aligned_cols=78 Identities=23% Similarity=0.250 Sum_probs=53.4
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEE
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 582 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i 582 (1093)
+.+++|+|+|+||.|..++-.|+..|+ .+|+|+|.+ ..|++.+++.+....+...+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~-----~~i~i~nR~-------------------~~ka~~La~~~~~~~~~~~~ 180 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGV-----QKLQVADLD-------------------TSRAQALADVINNAVGREAV 180 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcCC-------------------HHHHHHHHHHHhhccCcceE
Confidence 456799999999999999999999999 899998633 13777777776544443222
Q ss_pred EEEecccCccccccchhhhhccCCEEEEcc
Q 001356 583 EALQIRANPETENVFNDTFWENLNVVVNAL 612 (1093)
Q Consensus 583 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~al 612 (1093)
.... .. . + .....++|+||||+
T Consensus 181 ~~~~--~~----~-~-~~~~~~~divINaT 202 (283)
T PRK14027 181 VGVD--AR----G-I-EDVIAAADGVVNAT 202 (283)
T ss_pred EecC--Hh----H-H-HHHHhhcCEEEEcC
Confidence 2211 00 0 0 12345789999997
No 133
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.86 E-value=0.048 Score=64.16 Aligned_cols=75 Identities=27% Similarity=0.334 Sum_probs=57.3
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
|..++|+|||+|-.|.-+|++|...|++.|+|+.. + .-||+.+++++. +++..-
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR----------T---------~erA~~La~~~~-------~~~~~l 229 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANR----------T---------LERAEELAKKLG-------AEAVAL 229 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC----------C---------HHHHHHHHHHhC-------CeeecH
Confidence 88999999999999999999999999999999743 2 237777777775 222221
Q ss_pred ccchhhhcCCceEEEecCCHH
Q 001356 186 ELTKEKLSDFQAVVFTDISLE 206 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~~~~ 206 (1093)
+-..+.+.++|+||.++....
T Consensus 230 ~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 230 EELLEALAEADVVISSTSAPH 250 (414)
T ss_pred HHHHHhhhhCCEEEEecCCCc
Confidence 112367889999999987444
No 134
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.70 E-value=0.071 Score=60.49 Aligned_cols=84 Identities=20% Similarity=0.190 Sum_probs=54.3
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEE
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 582 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i 582 (1093)
+++++++|+|+||+|..++..|+..|+ .+|+|++.+. -...|++.+++.+....+.+.+
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~-----~~V~I~~R~~----------------~~~~~a~~l~~~l~~~~~~~~~ 182 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGA-----KEITIFNIKD----------------DFYERAEQTAEKIKQEVPECIV 182 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCCc----------------hHHHHHHHHHHHHhhcCCCcee
Confidence 567889999999999999999999999 7899986321 0113556666666555555444
Q ss_pred EEEecccCccccccchhhhhccCCEEEEcc
Q 001356 583 EALQIRANPETENVFNDTFWENLNVVVNAL 612 (1093)
Q Consensus 583 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~al 612 (1093)
.... +.. .+.+ ...+..+|+||||+
T Consensus 183 ~~~d--~~~-~~~~--~~~~~~~DilINaT 207 (289)
T PRK12548 183 NVYD--LND-TEKL--KAEIASSDILVNAT 207 (289)
T ss_pred EEec--hhh-hhHH--HhhhccCCEEEEeC
Confidence 3222 221 1111 12345679999886
No 135
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.69 E-value=0.086 Score=59.45 Aligned_cols=74 Identities=27% Similarity=0.322 Sum_probs=55.2
Q ss_pred hcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 107 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 107 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
+..+|+|+|+||.+..++..|...|+.+|+|+..+ ..||+.+++.+.+..+.+........
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~~~~ 185 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAALADL 185 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccccccccccccc
Confidence 46889999999999999999999999999998642 34888888888888874333322211
Q ss_pred cchhhhcCCceEEEec
Q 001356 187 LTKEKLSDFQAVVFTD 202 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~ 202 (1093)
+....+|+||.|+
T Consensus 186 ---~~~~~~dliINaT 198 (283)
T COG0169 186 ---EGLEEADLLINAT 198 (283)
T ss_pred ---ccccccCEEEECC
Confidence 1111688888776
No 136
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.64 E-value=0.096 Score=59.08 Aligned_cols=75 Identities=25% Similarity=0.357 Sum_probs=53.5
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
.+.+++|+|+|+||+|..+++.|...|+.+|++++.+ ..|++.+++.+....+ +.+ .
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~ 176 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---D 176 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---c
Confidence 3667899999999999999999999999999999752 2366666666654321 222 1
Q ss_pred cccchhhhcCCceEEEecC
Q 001356 185 TELTKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 185 ~~l~~~~l~~~dvVV~~~~ 203 (1093)
... .+.+.++|+||.|+.
T Consensus 177 ~~~-~~~~~~~DivInaTp 194 (278)
T PRK00258 177 LEL-QEELADFDLIINATS 194 (278)
T ss_pred ccc-hhccccCCEEEECCc
Confidence 111 245678899998873
No 137
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.48 E-value=0.12 Score=62.08 Aligned_cols=95 Identities=25% Similarity=0.231 Sum_probs=64.8
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
|++++|+|+|.|++|.++|+.|+..|. .++++|.+.- ...+...++|.+++ ++....
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~~----~~~~~~ 59 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEE------------------DQLKEALEELGELG----IELVLG 59 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------HHHHHHHHHHHhcC----CEEEeC
Confidence 678999999999999999999999997 7999886431 01112223343332 334444
Q ss_pred ccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEe
Q 001356 186 ELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIK 226 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~ 226 (1093)
+..++...++|+||.+.... ....+-..|+++| ||++.
T Consensus 60 ~~~~~~~~~~d~vv~~~g~~-~~~~~~~~a~~~~--i~~~~ 97 (450)
T PRK14106 60 EYPEEFLEGVDLVVVSPGVP-LDSPPVVQAHKKG--IEVIG 97 (450)
T ss_pred CcchhHhhcCCEEEECCCCC-CCCHHHHHHHHCC--CcEEe
Confidence 44445667899999876532 2234667889999 88876
No 138
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.43 E-value=0.066 Score=63.70 Aligned_cols=75 Identities=11% Similarity=0.115 Sum_probs=53.4
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
.+.+++|+|+|+||.|..++++|...|+.+|+|+..+ ..||+.+++.+. ...+ ..
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt-------------------~~ra~~La~~~~----~~~~--~~ 232 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT-------------------IEKAQKITSAFR----NASA--HY 232 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHhc----CCeE--ec
Confidence 3677899999999999999999999999999998642 125555554442 1222 21
Q ss_pred cccchhhhcCCceEEEecCC
Q 001356 185 TELTKEKLSDFQAVVFTDIS 204 (1093)
Q Consensus 185 ~~l~~~~l~~~dvVV~~~~~ 204 (1093)
.+--.+.+.++|+||.|+.+
T Consensus 233 ~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 233 LSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred HHHHHHHhccCCEEEECcCC
Confidence 11113568899999999865
No 139
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.43 E-value=0.13 Score=60.60 Aligned_cols=90 Identities=22% Similarity=0.304 Sum_probs=60.5
Q ss_pred EEEEcCChhHHHHHHHHHHhCCc-eEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecccc-
Q 001356 111 ILISGMQGLGAEIAKNLILAGVK-SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT- 188 (1093)
Q Consensus 111 VlIiG~gglGseiaKnLvlaGVg-~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l~- 188 (1093)
|+|+|+|.+|..+++.|+..+-. ++++.|.+ ..|++..++.+ . ...++...-++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~-------------------~~~~~~~~~~~--~--~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRN-------------------PEKAERLAEKL--L--GDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESS-------------------HHHHHHHHT----T--TTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECC-------------------HHHHHHHHhhc--c--ccceeEEEEecCC
Confidence 79999999999999999999855 89998852 22444444333 2 234444443332
Q ss_pred ----hhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEe
Q 001356 189 ----KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIK 226 (1093)
Q Consensus 189 ----~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~ 226 (1093)
.++++++|+||.|..+. ....+-+.|.+.| +.+|.
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g--~~yvD 96 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAG--VHYVD 96 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT---EEEE
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhC--CCeec
Confidence 25788999999998766 5668899999999 88888
No 140
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.39 E-value=0.11 Score=59.46 Aligned_cols=72 Identities=24% Similarity=0.296 Sum_probs=51.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCc-eEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCC----CcEEEEe
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVK-SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNN----AVAISAL 183 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg-~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp----~V~V~~~ 183 (1093)
.+|.|||+|++|+.+|..|+..|+. +|.|+|.+ ..|++..+..|.+..+ .+.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~-------------------~~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN-------------------EEKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3799999999999999999999985 89999852 2355555666655432 233332
Q ss_pred ecccchhhhcCCceEEEecC
Q 001356 184 TTELTKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 184 ~~~l~~~~l~~~dvVV~~~~ 203 (1093)
. +.+.+.++|+||.|..
T Consensus 61 -~--~~~~l~~aDIVIitag 77 (306)
T cd05291 61 -G--DYSDCKDADIVVITAG 77 (306)
T ss_pred -C--CHHHhCCCCEEEEccC
Confidence 2 2345789999998875
No 141
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.33 E-value=0.072 Score=60.26 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=31.6
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEec
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
+++++|+|+|+||.|..++..|+.+|+ .+|+|++
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~-----~~i~I~n 156 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGV-----TDITVIN 156 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCC-----CeEEEEe
Confidence 567899999999999999999999999 8999985
No 142
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=94.26 E-value=0.16 Score=54.16 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=68.1
Q ss_pred hhccCHHHHHHhhcCeEEEEcCChhHHH-HHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHH
Q 001356 95 LAVYGRETMRRLFASNILISGMQGLGAE-IAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQE 173 (1093)
Q Consensus 95 i~l~G~~~q~kL~~s~VlIiG~gglGse-iaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~e 173 (1093)
+..=+..+++++++++|.|+|.|+.|++ ++..|..+||+.+.
T Consensus 92 ~g~~~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------------------------------------- 134 (193)
T TIGR03882 92 LGVDPAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP------------------------------------- 134 (193)
T ss_pred cCCCHHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC-------------------------------------
Confidence 4445678889999999999999999988 99999999998655
Q ss_pred hCCCcEEEEeecccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecceeEEE
Q 001356 174 LNNAVAISALTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNI 236 (1093)
Q Consensus 174 LNp~V~V~~~~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~v 236 (1093)
++ ...++|++.+...+....+|+...+.+ +||+.+...|..+.|
T Consensus 135 --------------~~---a~l~vVl~~Dyl~p~L~~~n~~~l~~~--~~~l~v~~~~~~~~~ 178 (193)
T TIGR03882 135 --------------SE---ADLTVVLTDDYLDPELAAINQRALAAG--RPWLLVKPGGVQPWI 178 (193)
T ss_pred --------------CC---CCEEEEEeCCCCChHHHHHHHHHHHcC--CceEEEEeCCceEEE
Confidence 00 123455555556677889999999999 999999888877664
No 143
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.26 E-value=0.17 Score=57.45 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=42.4
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHh
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL 174 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eL 174 (1093)
++.++|+|+|+||.+..|+-.|+..|+++|+|++.+. + ...||+.+++++.+.
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~--------------~--~~~ka~~la~~~~~~ 174 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD--------------E--FFDKALAFAQRVNEN 174 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------c--HHHHHHHHHHHhhhc
Confidence 5677999999999999999999999999999998521 0 134788887777543
No 144
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=94.18 E-value=0.09 Score=56.57 Aligned_cols=83 Identities=24% Similarity=0.390 Sum_probs=59.6
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCE
Q 001356 503 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 581 (1093)
Q Consensus 503 L~~~~VlivG-~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~ 581 (1093)
+.+++++++| |||||-+++|.|+.-|+ ..+.|.| ..| . ..+..+|+++||..+
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgi-----k~~~i~~--~~E-------------n------~~a~akL~ai~p~~~ 56 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGI-----KVLVIDD--SEE-------------N------PEAIAKLQAINPSVS 56 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCc-----hheeehh--hhh-------------C------HHHHHHHhccCCCce
Confidence 4678889886 89999999999999999 5555544 221 1 235677999999999
Q ss_pred EEEEecccCcc--ccccchh--hhhccCCEEEEc
Q 001356 582 TEALQIRANPE--TENVFND--TFWENLNVVVNA 611 (1093)
Q Consensus 582 i~~~~~~v~~~--~~~~~~~--~f~~~~DvVi~a 611 (1093)
+..+..++... .+..|+. .-|...|++||.
T Consensus 57 v~F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINg 90 (261)
T KOG4169|consen 57 VIFIKCDVTNRGDLEAAFDKILATFGTIDILING 90 (261)
T ss_pred EEEEEeccccHHHHHHHHHHHHHHhCceEEEEcc
Confidence 99999888641 1222221 225678999975
No 145
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.08 E-value=0.12 Score=58.51 Aligned_cols=170 Identities=16% Similarity=0.124 Sum_probs=87.1
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCC---cccccccCccccchHHHHHHHHHHhCCCCEE
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLS---RQFLFRDWNIGQAKSTVAASAAALINPHLNT 582 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLn---RQflf~~~dvG~~Ka~va~~~l~~~np~~~i 582 (1093)
.+|.|||+|..|+.++.+|++.|. .++++|.+.=...... ++.+=+...-|+.....+...+.+ +
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~------l 73 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV------DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALAR------L 73 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC------EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhC------e
Confidence 489999999999999999999998 8999986532221100 000000001121111111111111 1
Q ss_pred EEEecccCccccccchhhhhccCCEEEEcc-CCHHHHHHH----hhcccccccceEeccccCcc-cceEEEeCCcccccC
Q 001356 583 EALQIRANPETENVFNDTFWENLNVVVNAL-DNVNARLYI----DQRCLYFQKPLLESGTLGAK-CNTQMVIPHLTENYG 656 (1093)
Q Consensus 583 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~al-Dn~~aR~~i----~~~c~~~~~pli~sgt~G~~-G~v~v~ip~~t~~y~ 656 (1093)
+.. + + + +-++++|+||.|+ ++.+.++.+ ...|-.-+..+.. -|.+.- ........+...+.+
T Consensus 74 ~~~-------~-~-~--~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~s-nTS~~~~~~la~~~~~~~r~~g 141 (286)
T PRK07819 74 RFT-------T-D-L--GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLAS-NTSSIPIMKLAAATKRPGRVLG 141 (286)
T ss_pred Eee-------C-C-H--HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEE-CCCCCCHHHHHhhcCCCccEEE
Confidence 111 1 1 1 2258899999775 555666654 3333223344443 232211 111111111111122
Q ss_pred cC-CCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChhhH
Q 001356 657 AS-RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEV 700 (1093)
Q Consensus 657 ~~-~~p~~~~~p~Ct~~~~P~~~~hci~wA~~~f~~~f~~~~~~~ 700 (1093)
.. -+|+ ...|...+-.-+.....++.+++.++...++..|-.+
T Consensus 142 ~hf~~P~-~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v 185 (286)
T PRK07819 142 LHFFNPV-PVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRA 185 (286)
T ss_pred EecCCCc-ccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEe
Confidence 21 1222 2345566767788889999999998877777765433
No 146
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=94.05 E-value=0.12 Score=50.94 Aligned_cols=99 Identities=23% Similarity=0.264 Sum_probs=59.5
Q ss_pred cEEEEcc-CcchHHHHHHHHH-cccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEE
Q 001356 507 KVFVVGS-GALGCEFLKNLAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 584 (1093)
Q Consensus 507 ~VlivG~-GgiG~e~lknLa~-~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~ 584 (1093)
||.|+|+ |-.|.++++.+.. -|+ --.-.+|... | -+ -..|+|. +..+. ...+..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~-----~lv~~v~~~~---~-----~~-~g~d~g~---------~~~~~-~~~~~v 57 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGF-----ELVGAVDRKP---S-----AK-VGKDVGE---------LAGIG-PLGVPV 57 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTE-----EEEEEEETTT---S-----TT-TTSBCHH---------HCTSS-T-SSBE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCc-----EEEEEEecCC---c-----cc-ccchhhh---------hhCcC-Cccccc
Confidence 7999999 9999999999998 566 2234444322 0 01 1234441 00111 111111
Q ss_pred EecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCcc
Q 001356 585 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGAK 641 (1093)
Q Consensus 585 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~~ 641 (1093)
. .+. ++.++.+|+|||.+ ++++-...-++|.++++|+| .||.|+.
T Consensus 58 ~-----~~l-----~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~V-iGTTG~~ 102 (124)
T PF01113_consen 58 T-----DDL-----EELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLV-IGTTGFS 102 (124)
T ss_dssp B-----S-H-----HHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEE-EE-SSSH
T ss_pred c-----hhH-----HHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEE-EECCCCC
Confidence 1 111 34566799999999 88888888889999999999 6888874
No 147
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=93.99 E-value=0.03 Score=51.47 Aligned_cols=41 Identities=24% Similarity=0.435 Sum_probs=30.8
Q ss_pred cCccCchhhhhccchhHHHHHhhccCccccc-ceeeccCCCC
Q 001356 430 RAVLNPMAAMFGGIVGQEVVKACSGKFHPLL-QFFYFDSVES 470 (1093)
Q Consensus 430 ~~el~PvaA~iGGiaAQEVIKaiTgkf~PI~-q~~~fD~~e~ 470 (1093)
.+-|.|+.+++|.+.|+|+||.|+|.-.|+. ++++||+...
T Consensus 23 ~GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~ 64 (84)
T PF05237_consen 23 AGVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNM 64 (84)
T ss_dssp S-B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCC
Confidence 4789999999999999999999999877755 6777998754
No 148
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=93.95 E-value=0.1 Score=58.81 Aligned_cols=36 Identities=22% Similarity=0.496 Sum_probs=32.3
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.+.+++|+|+|+||+|..+++.|+..|+ .+|+|++.
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~-----~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGV-----AEITIVNR 155 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEeC
Confidence 3667899999999999999999999998 79999863
No 149
>PRK04148 hypothetical protein; Provisional
Probab=93.94 E-value=0.55 Score=47.09 Aligned_cols=89 Identities=16% Similarity=0.145 Sum_probs=66.3
Q ss_pred hcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 107 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 107 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
++.+|++||+| .|.++|..|...|. .++-+|-+.- .++ ..++.. +++...+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~-------------------aV~----~a~~~~----~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK-------------------AVE----KAKKLG----LNAFVDD 66 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH-------------------HHH----HHHHhC----CeEEECc
Confidence 34689999999 99999999999996 7888885221 222 222221 3444444
Q ss_pred c---chhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEe
Q 001356 187 L---TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIK 226 (1093)
Q Consensus 187 l---~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~ 226 (1093)
+ +.++..++|+|..+..+.+.+.-+-+++++.+ .+++.
T Consensus 67 lf~p~~~~y~~a~liysirpp~el~~~~~~la~~~~--~~~~i 107 (134)
T PRK04148 67 LFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKIN--VPLII 107 (134)
T ss_pred CCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcC--CCEEE
Confidence 3 34678899999999999999999999999999 66765
No 150
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.78 E-value=0.11 Score=62.39 Aligned_cols=36 Identities=39% Similarity=0.597 Sum_probs=32.5
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCc
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 544 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~ 544 (1093)
+++++|+|+|+|++|.++++.|+..|. +++++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~------~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA------KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeCCc
Confidence 568899999999999999999999997 899998653
No 151
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.77 E-value=0.064 Score=48.42 Aligned_cols=30 Identities=33% Similarity=0.656 Sum_probs=27.8
Q ss_pred cEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 507 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 507 ~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
||+|||.|.+|+|+|..|+..|. +++|++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~------~vtli~~ 30 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK------EVTLIER 30 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS------EEEEEES
T ss_pred CEEEECcCHHHHHHHHHHHHhCc------EEEEEec
Confidence 68999999999999999999997 8999874
No 152
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.77 E-value=0.079 Score=57.23 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=68.5
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCE
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 581 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~ 581 (1093)
.|.+++|+|||.|.+|..=++.|+.+|. +++++-.+. +.. .... ...+ +
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga------~v~Vvs~~~-~~e--------------------l~~~-~~~~---~ 57 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA------DVTVVSPEF-EPE--------------------LKAL-IEEG---K 57 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC------EEEEEcCCc-cHH--------------------HHHH-HHhc---C
Confidence 4678899999999999999999999996 999986554 110 1111 1111 1
Q ss_pred EEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecc
Q 001356 582 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 636 (1093)
Q Consensus 582 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sg 636 (1093)
++.+... |+.+.+..+++||.|+||.+--..+-+.|..+++|+-.+.
T Consensus 58 i~~~~~~--------~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D 104 (210)
T COG1648 58 IKWIERE--------FDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVD 104 (210)
T ss_pred cchhhcc--------cChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccC
Confidence 2222222 3344556699999999999999999999999999876433
No 153
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.68 E-value=0.23 Score=54.32 Aligned_cols=96 Identities=22% Similarity=0.293 Sum_probs=63.6
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEEE
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 585 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~ 585 (1093)
++++|+|||-+|..+|+.|+..|- .+++||.|.- .+.+.+. ......++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~------~Vv~Id~d~~----------------------~~~~~~~---~~~~~~~v 49 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH------NVVLIDRDEE----------------------RVEEFLA---DELDTHVV 49 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC------ceEEEEcCHH----------------------HHHHHhh---hhcceEEE
Confidence 479999999999999999999996 8899986532 1111111 11233444
Q ss_pred ecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccc-cccceEe
Q 001356 586 QIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY-FQKPLLE 634 (1093)
Q Consensus 586 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~-~~~pli~ 634 (1093)
...-.. ...+...-..++|+++.++++-..-..+-.++.+ +++|-+.
T Consensus 50 ~gd~t~--~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~vi 97 (225)
T COG0569 50 IGDATD--EDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVI 97 (225)
T ss_pred EecCCC--HHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEE
Confidence 433322 2233334467899999999997776666666654 7888764
No 154
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=93.65 E-value=0.035 Score=51.42 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=36.8
Q ss_pred CCCcHHHHHHHH-HHc-CCceeeeecCCceeeccCCcchhhcccCcHHHHH
Q 001356 1006 DNPTLRQLLQWL-QDK-GLNAYSISYGSCLLFNSMFPRHKERMDKKVVDLV 1054 (1093)
Q Consensus 1006 ~~~TL~~li~~~-~~~-~l~~~~i~~g~~~LY~~~~~~~~~~l~~~l~~l~ 1054 (1093)
..+||++|++.+ +++ |+..+.++.|..+||++......++++|+|++|.
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elg 57 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELG 57 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcC
Confidence 478999999986 445 9999999999999999875445789999999994
No 155
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=93.56 E-value=0.086 Score=62.09 Aligned_cols=75 Identities=28% Similarity=0.404 Sum_probs=56.3
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCE
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 581 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~ 581 (1093)
.|.+++|+|||+|-+|.-+++.|+..|+ .+|+|+ ||++ .||.-+|+.+. ..
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~-----~~i~Ia----------NRT~---------erA~~La~~~~-----~~ 225 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGV-----KKITIA----------NRTL---------ERAEELAKKLG-----AE 225 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCC-----CEEEEE----------cCCH---------HHHHHHHHHhC-----Ce
Confidence 3888999999999999999999999999 899985 6655 36766676654 22
Q ss_pred EEEEecccCccccccchhhhhccCCEEEEccCCH
Q 001356 582 TEALQIRANPETENVFNDTFWENLNVVVNALDNV 615 (1093)
Q Consensus 582 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~ 615 (1093)
+..+. .+ .+++..+|+||.|+..+
T Consensus 226 ~~~l~--------el--~~~l~~~DvVissTsa~ 249 (414)
T COG0373 226 AVALE--------EL--LEALAEADVVISSTSAP 249 (414)
T ss_pred eecHH--------HH--HHhhhhCCEEEEecCCC
Confidence 22221 11 35778999999997654
No 156
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.55 E-value=0.14 Score=58.10 Aligned_cols=83 Identities=10% Similarity=0.103 Sum_probs=52.8
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEE
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNT 582 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i 582 (1093)
+++++++|+|+||.+..++-.|+..|+ .+|+|++.+ .. ...|++.+++.+....+ ..+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~-----~~i~i~nRt---------------~~-~~~ka~~la~~~~~~~~-~~~ 179 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGL-----KEIKLFNRR---------------DE-FFDKALAFAQRVNENTD-CVV 179 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEeCC---------------cc-HHHHHHHHHHHhhhccC-ceE
Confidence 567799999999999999999999999 899998721 01 23577777776644322 122
Q ss_pred EEEecccCccccccchhhhhccCCEEEEcc
Q 001356 583 EALQIRANPETENVFNDTFWENLNVVVNAL 612 (1093)
Q Consensus 583 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~al 612 (1093)
.... +.. ...+ .+-..++|+||||+
T Consensus 180 ~~~~--~~~--~~~l-~~~~~~aDivINaT 204 (288)
T PRK12749 180 TVTD--LAD--QQAF-AEALASADILTNGT 204 (288)
T ss_pred EEec--hhh--hhhh-hhhcccCCEEEECC
Confidence 2221 110 0001 11235789999986
No 157
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.38 E-value=0.16 Score=52.59 Aligned_cols=111 Identities=21% Similarity=0.257 Sum_probs=62.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeeccc-
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL- 187 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l- 187 (1093)
.+|.+||+|-.|+.+|+||..+|. .++++|.+.-....+... |-..+....+.+++. ++-+......-
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~--------g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEA--------GAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHT--------TEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHh--------hhhhhhhhhhHhhcc--cceEeecccchh
Confidence 479999999999999999999997 688888643211111110 111111112222221 34444433311
Q ss_pred chh------hh---cCCceEEEec-CCHHHHHHHHHHHHhcCCCcceEeeeecce
Q 001356 188 TKE------KL---SDFQAVVFTD-ISLEKAVEFDDYCHNHQPPIAFIKSEVRGL 232 (1093)
Q Consensus 188 ~~~------~l---~~~dvVV~~~-~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~ 232 (1093)
.++ .+ ..=+++|++. .+++...++.+.+.+++ +.||.+.+.|-
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g--~~~vdapV~Gg 123 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG--VRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT--EEEEEEEEESH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc--ceeeeeeeecc
Confidence 111 22 2235667655 47888899999999999 99999887764
No 158
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.38 E-value=0.27 Score=56.49 Aligned_cols=75 Identities=17% Similarity=0.215 Sum_probs=53.9
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhCCc-eEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCc-EEEEeec
Q 001356 108 ASNILISGMQGLGAEIAKNLILAGVK-SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAV-AISALTT 185 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLvlaGVg-~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V-~V~~~~~ 185 (1093)
..+|.|||+|.+|+.+|-.|+..|+- +|.|+|- .+.+++..+.-|+...|.. .+.....
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~~ 66 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYAG 66 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEeC
Confidence 46999999999999999999999985 7999984 2335556666677665431 2333333
Q ss_pred ccchhhhcCCceEEEecC
Q 001356 186 ELTKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~ 203 (1093)
. .+-+++.|+||.+..
T Consensus 67 ~--~~~~~~adivIitag 82 (315)
T PRK00066 67 D--YSDCKDADLVVITAG 82 (315)
T ss_pred C--HHHhCCCCEEEEecC
Confidence 2 345789999998765
No 159
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.36 E-value=0.024 Score=59.57 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=33.0
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCcc
Q 001356 501 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVI 545 (1093)
Q Consensus 501 ~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~I 545 (1093)
..|.+++|.|||+|.||.++++.|...|+ +++.+|...-
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~~~~ 70 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM------RVIGYDRSPK 70 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT-------EEEEEESSCH
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc------eeEEecccCC
Confidence 47899999999999999999999999998 8998885443
No 160
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=93.24 E-value=0.35 Score=55.47 Aligned_cols=76 Identities=24% Similarity=0.274 Sum_probs=53.6
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
+...+|+|+|+|.+|..++++|...|+..|+++|.+. .|+..+++.+. . .+... .
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g----~-~~~~~-~ 230 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELG----G-NAVPL-D 230 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcC----C-eEEeH-H
Confidence 6789999999999999999999999999999998532 34544444432 1 22111 1
Q ss_pred ccchhhhcCCceEEEecCCHHH
Q 001356 186 ELTKEKLSDFQAVVFTDISLEK 207 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~~~~~ 207 (1093)
+ ..+.+.++|+||.|+.+...
T Consensus 231 ~-~~~~l~~aDvVi~at~~~~~ 251 (311)
T cd05213 231 E-LLELLNEADVVISATGAPHY 251 (311)
T ss_pred H-HHHHHhcCCEEEECCCCCch
Confidence 1 13456789999999875544
No 161
>PLN00203 glutamyl-tRNA reductase
Probab=93.23 E-value=0.18 Score=61.67 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=52.9
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
|..++|+|||+|+.|..++++|...|+.+|++++.+ ..|++.+++.+ +.+.+.+...
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~~~ 320 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYKPL 320 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEeecH
Confidence 557899999999999999999999999999998752 12444444333 3343333222
Q ss_pred ccchhhhcCCceEEEecCC
Q 001356 186 ELTKEKLSDFQAVVFTDIS 204 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~~ 204 (1093)
.-..+.+.++|+||.|+..
T Consensus 321 ~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 321 DEMLACAAEADVVFTSTSS 339 (519)
T ss_pred hhHHHHHhcCCEEEEccCC
Confidence 1123567899999998753
No 162
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=93.04 E-value=0.23 Score=53.62 Aligned_cols=62 Identities=29% Similarity=0.484 Sum_probs=50.0
Q ss_pred hhcCeEEEE-cCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 106 LFASNILIS-GMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 106 L~~s~VlIi-G~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
+..++++++ |+||+|-+++|.|...|++.+.|.|. .+| -.+..+|++.||.++|-.+.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~----~En-----------------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS----EEN-----------------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhh----hhC-----------------HHHHHHHhccCCCceEEEEE
Confidence 456788888 59999999999999999998888764 111 24456899999999999988
Q ss_pred cccc
Q 001356 185 TELT 188 (1093)
Q Consensus 185 ~~l~ 188 (1093)
.+++
T Consensus 62 ~DVt 65 (261)
T KOG4169|consen 62 CDVT 65 (261)
T ss_pred eccc
Confidence 7764
No 163
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.01 E-value=0.14 Score=60.92 Aligned_cols=35 Identities=11% Similarity=0.462 Sum_probs=31.8
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEec
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
.+.+++|+|||+|+.|..++++|+..|+ .+|+|+.
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~-----~~I~V~n 212 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAP-----KQIMLAN 212 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCC-----CEEEEEC
Confidence 4677899999999999999999999999 8899874
No 164
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.99 E-value=1.1 Score=43.08 Aligned_cols=82 Identities=23% Similarity=0.326 Sum_probs=56.8
Q ss_pred EEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecccc--
Q 001356 111 ILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT-- 188 (1093)
Q Consensus 111 VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l~-- 188 (1093)
|+|+|+|.+|.++++.|...| ..++++|.+.- + .+.+.+.. +.++..+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~-------------------~----~~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE-------------------R----VEELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH-------------------H----HHHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH-------------------H----HHHHHhcc----cccccccchhh
Confidence 789999999999999999944 68999986431 1 23333333 223444432
Q ss_pred ----hhhhcCCceEEEecCCHHHHHHHHHHHHhcCC
Q 001356 189 ----KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQP 220 (1093)
Q Consensus 189 ----~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~ 220 (1093)
...+.+++.||++.++......+...+++.++
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~ 88 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARELNP 88 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTT
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCC
Confidence 23466889999998888888888888898664
No 165
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.88 E-value=0.34 Score=49.10 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=31.6
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeC
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
++..+|+|+|+|++|..+++.|...|...++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 55789999999999999999999998778999885
No 166
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=92.77 E-value=0.71 Score=52.71 Aligned_cols=71 Identities=25% Similarity=0.256 Sum_probs=52.1
Q ss_pred EEEEcCChhHHHHHHHHHHhCC-ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCC---cEEEEeecc
Q 001356 111 ILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA---VAISALTTE 186 (1093)
Q Consensus 111 VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~---V~V~~~~~~ 186 (1093)
|.|||+|.+|+.+|-.|+..|+ .+|+|+|.+ +.|++..+..|.+..+. +.+... .+
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~~-~~ 60 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVRG-GD 60 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEEC-CC
Confidence 5799999999999999999997 569999852 34566666677766654 333321 11
Q ss_pred cchhhhcCCceEEEecC
Q 001356 187 LTKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~~ 203 (1093)
.+-+.++|+||.|..
T Consensus 61 --~~~l~~aDiVIitag 75 (300)
T cd00300 61 --YADAADADIVVITAG 75 (300)
T ss_pred --HHHhCCCCEEEEcCC
Confidence 357889999998765
No 167
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=92.59 E-value=0.33 Score=58.03 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=33.3
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeC
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
.+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 367899999999999999999999999999999875
No 168
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.59 E-value=0.35 Score=55.70 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=87.4
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEEE
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 585 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~ 585 (1093)
++|.|||+|-+|+.++..|+..|. .++++|.+.=....+ +.....+.+.+.+..+. -...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~------~V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~--~~~~ 67 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL------DVVAWDPAPGAEAAL------------RANVANAWPALERQGLA--PGAS 67 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCC--hhhH
Confidence 579999999999999999999998 999999654211110 01111111111111110 0011
Q ss_pred ecccCccccccchhhhhccCCEEEEcc-CCHHHHHHHhhccccccc--ceEeccccCcccc-eEEEeCCcccccCcCCCC
Q 001356 586 QIRANPETENVFNDTFWENLNVVVNAL-DNVNARLYIDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGASRDP 661 (1093)
Q Consensus 586 ~~~v~~~~~~~~~~~f~~~~DvVi~al-Dn~~aR~~i~~~c~~~~~--pli~sgt~G~~G~-v~v~ip~~t~~y~~~~~p 661 (1093)
..++...+ . + .+-++++|+|+.|+ .+.+.++.+-......-. .+|.+.|.+..-. ..-...+-.-+...+.-.
T Consensus 68 ~~~i~~~~-~-l-~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~Hffn 144 (321)
T PRK07066 68 PARLRFVA-T-I-EACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFN 144 (321)
T ss_pred HhhceecC-C-H-HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCC
Confidence 11221111 1 1 24568999999775 466666644332222211 2777666664321 110111111122221111
Q ss_pred CCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChh
Q 001356 662 PEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPA 698 (1093)
Q Consensus 662 ~~~~~p~Ct~~~~P~~~~hci~wA~~~f~~~f~~~~~ 698 (1093)
|..-.|+.-+-.-|....-++.++++++.. .+..|-
T Consensus 145 P~~~~pLVEVv~g~~T~~e~~~~~~~f~~~-lGk~pV 180 (321)
T PRK07066 145 PVYLLPLVEVLGGERTAPEAVDAAMGIYRA-LGMRPL 180 (321)
T ss_pred ccccCceEEEeCCCCCCHHHHHHHHHHHHH-cCCEeE
Confidence 222345555555677888899999998876 565553
No 169
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.52 E-value=0.5 Score=53.27 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=29.2
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
.+|.|||+|-+|+.++..|+..|. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC------ceEEEeCC
Confidence 479999999999999999999997 89999855
No 170
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.51 E-value=0.44 Score=54.58 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=52.0
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC-ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCC---cEEEEeec
Q 001356 110 NILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA---VAISALTT 185 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~---V~V~~~~~ 185 (1093)
+|.|||+|.+|+.+|-.|+..|+ +.+.|+|- -+.|++.-+.-|+...+. ..+.....
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~~ 61 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIRAG 61 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEEEC
Confidence 68999999999999999999997 67999984 233555555566664431 22333333
Q ss_pred ccchhhhcCCceEEEecC
Q 001356 186 ELTKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~ 203 (1093)
+.+-+++.|+||.|..
T Consensus 62 --~y~~~~~aDivvitaG 77 (307)
T cd05290 62 --DYDDCADADIIVITAG 77 (307)
T ss_pred --CHHHhCCCCEEEECCC
Confidence 3467889999998765
No 171
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.39 E-value=0.12 Score=58.46 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=29.8
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCc
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 544 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~ 544 (1093)
++|.|||+|.+|+.++.+|+..|. +++++|.|.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~------~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF------QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC------cEEEEeCCH
Confidence 479999999999999999999997 899998664
No 172
>PLN00203 glutamyl-tRNA reductase
Probab=92.37 E-value=2.3 Score=52.27 Aligned_cols=34 Identities=29% Similarity=0.575 Sum_probs=30.5
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEec
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
|.+++|+|||+|.+|..+++.|...|+ .+|++++
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~-----~~V~V~n 297 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC-----TKMVVVN 297 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC-----CeEEEEe
Confidence 456799999999999999999999998 7899875
No 173
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=92.35 E-value=0.28 Score=55.34 Aligned_cols=74 Identities=20% Similarity=0.325 Sum_probs=52.5
Q ss_pred hcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEE
Q 001356 504 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 583 (1093)
Q Consensus 504 ~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~ 583 (1093)
.+++|+|+|+||.+-.++-.|+..|+ .+|+|+. | -..|++.+++.+.+..+.+...
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~-----~~i~V~N----------R---------t~~ra~~La~~~~~~~~~~~~~ 180 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGA-----KRITVVN----------R---------TRERAEELADLFGELGAAVEAA 180 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-----CEEEEEe----------C---------CHHHHHHHHHHhhhcccccccc
Confidence 46889999999999999999999999 8999984 2 1357777777777766522221
Q ss_pred EEecccCccccccchhhhhccCCEEEEcc
Q 001356 584 ALQIRANPETENVFNDTFWENLNVVVNAL 612 (1093)
Q Consensus 584 ~~~~~v~~~~~~~~~~~f~~~~DvVi~al 612 (1093)
... +.+ -.+.+|+||||+
T Consensus 181 ~~~-----~~~------~~~~~dliINaT 198 (283)
T COG0169 181 ALA-----DLE------GLEEADLLINAT 198 (283)
T ss_pred ccc-----ccc------cccccCEEEECC
Confidence 111 111 111689999997
No 174
>PRK10637 cysG siroheme synthase; Provisional
Probab=92.27 E-value=0.33 Score=58.76 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=68.4
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCE
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 581 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~ 581 (1093)
.|++++|+|||.|.++..=++.|...|. +|+||-++. .+ .++.+-..-+
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga------~v~visp~~------------~~-------------~~~~l~~~~~ 57 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA------RLTVNALAF------------IP-------------QFTAWADAGM 57 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCCC------------CH-------------HHHHHHhCCC
Confidence 5789999999999999999999999996 899985441 11 0111111224
Q ss_pred EEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceE
Q 001356 582 TEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 633 (1093)
Q Consensus 582 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli 633 (1093)
|+.+...+ ....++++++||.|+||.+.-..|...|...++++-
T Consensus 58 i~~~~~~~--------~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN 101 (457)
T PRK10637 58 LTLVEGPF--------DESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCN 101 (457)
T ss_pred EEEEeCCC--------ChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEE
Confidence 44554433 245578899999999999999999999999888754
No 175
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=92.11 E-value=0.14 Score=41.38 Aligned_cols=23 Identities=35% Similarity=0.693 Sum_probs=19.6
Q ss_pred hhcccchHHHHHHHHHHHHHHHH
Q 001356 735 KERCETFQDCITWARLRFEDYFA 757 (1093)
Q Consensus 735 ~~~~~~~~~c~~~a~~~f~~~F~ 757 (1093)
...|.+.+.||+||+.+|+.+|.
T Consensus 23 r~~P~~~~HcI~wAk~~f~~~F~ 45 (45)
T PF10585_consen 23 RNFPRTPEHCIEWAKDLFEELFG 45 (45)
T ss_dssp HTS-SSHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCchHHHHHHHHHHHHHhC
Confidence 45799999999999999999983
No 176
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.10 E-value=0.43 Score=54.82 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=52.3
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhCCc-eEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCC---cEEEEe
Q 001356 108 ASNILISGMQGLGAEIAKNLILAGVK-SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA---VAISAL 183 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLvlaGVg-~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~---V~V~~~ 183 (1093)
..+|.|||+|.+|+.+|-.|+..|.. +|.|+|-. +.+++..+.-|+...|. .+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence 45899999999999999999999985 69999852 23555555566655542 334321
Q ss_pred ecccchhhhcCCceEEEecC
Q 001356 184 TTELTKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 184 ~~~l~~~~l~~~dvVV~~~~ 203 (1093)
. +.+.+++.|+||.|..
T Consensus 64 -~--dy~~~~~adivvitaG 80 (312)
T cd05293 64 -K--DYSVTANSKVVIVTAG 80 (312)
T ss_pred -C--CHHHhCCCCEEEECCC
Confidence 2 2345899999998654
No 177
>PLN02602 lactate dehydrogenase
Probab=92.09 E-value=0.41 Score=55.83 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=51.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCC-ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCC---CcEEEEee
Q 001356 109 SNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNN---AVAISALT 184 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp---~V~V~~~~ 184 (1093)
.+|.|||+|.+|+.+|-.|+..|+ .+|.|+|- .+.|++..+.-|+...+ .++|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi-------------------~~~~~~g~a~DL~~~~~~~~~~~i~~~- 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV-------------------NPDKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence 699999999999999999999998 57999985 12345555555555443 3444431
Q ss_pred cccchhhhcCCceEEEecC
Q 001356 185 TELTKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 185 ~~l~~~~l~~~dvVV~~~~ 203 (1093)
-+.+.+++.|+||.|..
T Consensus 98 --~dy~~~~daDiVVitAG 114 (350)
T PLN02602 98 --TDYAVTAGSDLCIVTAG 114 (350)
T ss_pred --CCHHHhCCCCEEEECCC
Confidence 12345889999999854
No 178
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.00 E-value=0.59 Score=53.48 Aligned_cols=33 Identities=30% Similarity=0.248 Sum_probs=29.1
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 108 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
..+|+|+|+|++|+-++-.|..+|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 3579999999999999999999995 78888863
No 179
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.88 E-value=1.2 Score=48.69 Aligned_cols=105 Identities=18% Similarity=0.215 Sum_probs=64.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc--
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE-- 186 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~-- 186 (1093)
.+++|+|+|-+|..+|++|...|- .++++|.|.- .+.+.+++ ...+.++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~----------------------~~~~~~~~---~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEE----------------------RVEEFLAD---ELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHH----------------------HHHHHhhh---hcceEEEEecCC
Confidence 479999999999999999999997 5566664221 11112221 1122222222
Q ss_pred ----cchhhhcCCceEEEecCCHHHHHHHHHHHHh-cCCCcceEeeeecce-eEEEEeecC
Q 001356 187 ----LTKEKLSDFQAVVFTDISLEKAVEFDDYCHN-HQPPIAFIKSEVRGL-FGNIFCDFG 241 (1093)
Q Consensus 187 ----l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~-~~~~ip~I~~~~~G~-~G~vf~d~g 241 (1093)
+.+.-+.++|+||.++.+...-..+-..+.+ +| +|-+.+.+..- +..++...|
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~g--v~~viar~~~~~~~~~~~~~g 113 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFG--VPRVIARARNPEHEKVLEKLG 113 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcC--CCcEEEEecCHHHHHHHHHcC
Confidence 2223467899999988876655555655555 78 78777665543 444444444
No 180
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=91.86 E-value=0.59 Score=56.66 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=69.2
Q ss_pred HHHHHHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHh
Q 001356 498 KLQKKLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALI 576 (1093)
Q Consensus 498 ~~q~~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~ 576 (1093)
.....+.+++|+|-|+ |++|+|+++.++..+. .+|.++|.| .+|-..+...++..
T Consensus 243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p-----~~i~l~~~~-------------------E~~~~~i~~el~~~ 298 (588)
T COG1086 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNP-----KEIILFSRD-------------------EYKLYLIDMELREK 298 (588)
T ss_pred HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCC-----CEEEEecCc-------------------hHHHHHHHHHHHhh
Confidence 4567899999999997 7799999999999999 999998754 45566678888999
Q ss_pred CCCCEEEEEecccCccccccchhhhhcc--CCEEEEc
Q 001356 577 NPHLNTEALQIRANPETENVFNDTFWEN--LNVVVNA 611 (1093)
Q Consensus 577 np~~~i~~~~~~v~~~~~~~~~~~f~~~--~DvVi~a 611 (1093)
.|..++..+..++.+.. .+ ...+++ .|+|+-|
T Consensus 299 ~~~~~~~~~igdVrD~~-~~--~~~~~~~kvd~VfHA 332 (588)
T COG1086 299 FPELKLRFYIGDVRDRD-RV--ERAMEGHKVDIVFHA 332 (588)
T ss_pred CCCcceEEEecccccHH-HH--HHHHhcCCCceEEEh
Confidence 99999999998887532 22 234555 8899876
No 181
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.71 E-value=0.39 Score=54.98 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=29.1
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
+||.|||+|++|+.++..|+..|+. .+|+|+|.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~----~ei~l~D~ 33 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIA----DELVLIDI 33 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC
Confidence 3799999999999999999999982 38999984
No 182
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=91.70 E-value=0.51 Score=52.72 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=52.4
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCE
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 581 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~ 581 (1093)
+..++++|-|| +|||-|+++.||+-|. +++||- |. +.|-+.+++.+.... .++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~------~liLva---------------R~----~~kL~~la~~l~~~~-~v~ 57 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY------NLILVA---------------RR----EDKLEALAKELEDKT-GVE 57 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC------EEEEEe---------------Cc----HHHHHHHHHHHHHhh-Cce
Confidence 45678999996 9999999999999997 888874 22 457788888888877 788
Q ss_pred EEEEecccCcc
Q 001356 582 TEALQIRANPE 592 (1093)
Q Consensus 582 i~~~~~~v~~~ 592 (1093)
++.+..++.+.
T Consensus 58 v~vi~~DLs~~ 68 (265)
T COG0300 58 VEVIPADLSDP 68 (265)
T ss_pred EEEEECcCCCh
Confidence 88888887753
No 183
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.70 E-value=0.23 Score=51.82 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=30.0
Q ss_pred HHhcCcEEEEccCcc-hHHHHHHHHHcccccCCCcceEEec
Q 001356 502 KLEEAKVFVVGSGAL-GCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 502 ~L~~~~VlivG~Ggi-G~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
.|.+++|+|||+|.+ |..++++|...|+ ++++++
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~------~V~v~~ 75 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA------TVTVCH 75 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC------EEEEEE
Confidence 478899999999985 8889999999997 688876
No 184
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.60 E-value=0.19 Score=54.91 Aligned_cols=37 Identities=30% Similarity=0.485 Sum_probs=34.9
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCc--eEEEEeCC
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVK--SVTLHDEG 141 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg--~itLvD~d 141 (1093)
.++..+|+|+|+|+.|..+++.|...|++ +|+|+|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 57889999999999999999999999999 99999986
No 185
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=91.45 E-value=0.15 Score=55.69 Aligned_cols=37 Identities=30% Similarity=0.541 Sum_probs=33.9
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCc--ceEEecCC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQG--KLTITDDD 543 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g--~i~liD~D 543 (1093)
.+++.+|+|+|+|+.|+.+++.|+..|+ . +|+|+|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~-----~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGA-----KPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCc-----CcceEEEEeCC
Confidence 4778899999999999999999999999 6 99999965
No 186
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.35 E-value=0.8 Score=52.37 Aligned_cols=32 Identities=19% Similarity=0.416 Sum_probs=28.8
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
++|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC------eEEEEECC
Confidence 479999999999999999999997 78999854
No 187
>PRK04148 hypothetical protein; Provisional
Probab=91.28 E-value=1 Score=45.18 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=67.1
Q ss_pred hcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEE
Q 001356 504 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 583 (1093)
Q Consensus 504 ~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~ 583 (1093)
++.+|++||+| -|.++++.|+.+|. .++.||.+.- +.+.++.. .+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~------~ViaIDi~~~-----------------------aV~~a~~~----~~~ 61 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF------DVIVIDINEK-----------------------AVEKAKKL----GLN 61 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC------EEEEEECCHH-----------------------HHHHHHHh----CCe
Confidence 34689999999 99999999999997 9999984321 12222222 234
Q ss_pred EEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceE
Q 001356 584 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 633 (1093)
Q Consensus 584 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli 633 (1093)
+...++... +.++++++|+|...-=..+-...+-+.+.+.+.+++
T Consensus 62 ~v~dDlf~p-----~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~ 106 (134)
T PRK04148 62 AFVDDLFNP-----NLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLI 106 (134)
T ss_pred EEECcCCCC-----CHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEE
Confidence 555444322 246789999999998888888899999999998887
No 188
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=91.15 E-value=0.85 Score=44.69 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=33.1
Q ss_pred hhhccCCEEEEccCCHHHHHHHhhcccccccceEecc-ccCcccceEEEeC
Q 001356 600 TFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG-TLGAKCNTQMVIP 649 (1093)
Q Consensus 600 ~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sg-t~G~~G~v~v~ip 649 (1093)
+-+.+.|+||.|+++-.++.+...+ ...++.+|+.+ ..-+...+...+|
T Consensus 62 ~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~~~R~~~~~~~~~p 111 (121)
T PF01118_consen 62 EELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSGDFRLDDDVPYGLP 111 (121)
T ss_dssp HHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSSTTTTSTTSEEE-H
T ss_pred hHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCHHHhCCCCCCEEeC
Confidence 4458999999999999888888776 77788888633 3334333444444
No 189
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.14 E-value=0.9 Score=48.21 Aligned_cols=78 Identities=18% Similarity=0.166 Sum_probs=52.1
Q ss_pred HhhcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001356 105 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 183 (1093)
Q Consensus 105 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~ 183 (1093)
.++.++|+|+|. |++|..+++.|+..| .++++++.+ ..|++.+++.+.+.. .+.+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 467899999996 999999999999988 488888642 235666666665332 2333332
Q ss_pred ec-ccc--hhhhcCCceEEEecC
Q 001356 184 TT-ELT--KEKLSDFQAVVFTDI 203 (1093)
Q Consensus 184 ~~-~l~--~~~l~~~dvVV~~~~ 203 (1093)
.. +.. .+.+.++|+||.++.
T Consensus 84 ~~~~~~~~~~~~~~~diVi~at~ 106 (194)
T cd01078 84 ETSDDAARAAAIKGADVVFAAGA 106 (194)
T ss_pred eCCCHHHHHHHHhcCCEEEECCC
Confidence 11 111 245678888888764
No 190
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=91.02 E-value=1.3 Score=41.12 Aligned_cols=78 Identities=17% Similarity=0.311 Sum_probs=48.6
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC--ceEEEE-eCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 110 NILISGMQGLGAEIAKNLILAGV--KSVTLH-DEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGV--g~itLv-D~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
+|.|||+|.+|..+++.|+..|+ .+|.++ +.+ ..|+ +++.+..+ +.+. ..+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~-------------------~~~~----~~~~~~~~-~~~~--~~~ 54 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS-------------------PEKA----AELAKEYG-VQAT--ADD 54 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS-------------------HHHH----HHHHHHCT-TEEE--SEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc-------------------HHHH----HHHHHhhc-cccc--cCC
Confidence 68999999999999999999994 344433 321 1132 34444444 2222 211
Q ss_pred cchhhhcCCceEEEecCCHHHHHHHHHH
Q 001356 187 LTKEKLSDFQAVVFTDISLEKAVEFDDY 214 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~~~~~~~~~ln~~ 214 (1093)
..+.++..|+||+|..+......+.++
T Consensus 55 -~~~~~~~advvilav~p~~~~~v~~~i 81 (96)
T PF03807_consen 55 -NEEAAQEADVVILAVKPQQLPEVLSEI 81 (96)
T ss_dssp -HHHHHHHTSEEEE-S-GGGHHHHHHHH
T ss_pred -hHHhhccCCEEEEEECHHHHHHHHHHH
Confidence 345677899999999876666656655
No 191
>PRK05854 short chain dehydrogenase; Provisional
Probab=90.97 E-value=0.6 Score=53.44 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=43.9
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCE
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 581 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~ 581 (1093)
+++++++|.|+ ||||.++++.|++.|. ++++++.+. .|.+.+.+.+.+.+|+.+
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~------~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~ 66 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA------EVILPVRNR-------------------AKGEAAVAAIRTAVPDAK 66 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeCCH-------------------HHHHHHHHHHHHhCCCCc
Confidence 56778999985 8999999999999997 787776321 244455555655566555
Q ss_pred EEEEecccC
Q 001356 582 TEALQIRAN 590 (1093)
Q Consensus 582 i~~~~~~v~ 590 (1093)
+..+..++.
T Consensus 67 v~~~~~Dl~ 75 (313)
T PRK05854 67 LSLRALDLS 75 (313)
T ss_pred eEEEEecCC
Confidence 555555554
No 192
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.74 E-value=0.68 Score=46.83 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=50.6
Q ss_pred CcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCC--EE
Q 001356 506 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL--NT 582 (1093)
Q Consensus 506 ~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~--~i 582 (1093)
.||.|||+ |.+|+.++-.|++.|++ .+|.|+|.+ ..|++..+.-+....+.. .+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~----~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~ 57 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLA----DEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPV 57 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTS----SEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC----CceEEeccC-------------------cccceeeehhhhhhhhhccccc
Confidence 48999999 99999999999999994 469999822 225555555555443322 33
Q ss_pred EEEecccCccccccchhhhhccCCEEEEccCC
Q 001356 583 EALQIRANPETENVFNDTFWENLNVVVNALDN 614 (1093)
Q Consensus 583 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn 614 (1093)
.... +. .+-+++.|+||.+...
T Consensus 58 ~i~~---~~-------~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 58 RITS---GD-------YEALKDADIVVITAGV 79 (141)
T ss_dssp EEEE---SS-------GGGGTTESEEEETTST
T ss_pred cccc---cc-------ccccccccEEEEeccc
Confidence 3332 11 1335789999987643
No 193
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.65 E-value=0.67 Score=56.35 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=60.9
Q ss_pred HHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEE
Q 001356 101 ETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAI 180 (1093)
Q Consensus 101 ~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V 180 (1093)
++...++.++|+|+|+|+.|..+|+.|...|. .+++.|.+. .+. .+.+.++ .+++
T Consensus 8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~-------------------~~~---~~~l~~~--gi~~ 62 (473)
T PRK00141 8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNE-------------------TAR---HKLIEVT--GVAD 62 (473)
T ss_pred hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCh-------------------HHH---HHHHHhc--CcEE
Confidence 44455677899999999999999999999998 888888521 011 1112221 3333
Q ss_pred EEeecccchhhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEe
Q 001356 181 SALTTELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIK 226 (1093)
Q Consensus 181 ~~~~~~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~ 226 (1093)
+...-.++.+.++|+||.+.. +... ..-..+++++ +|++.
T Consensus 63 --~~~~~~~~~~~~~d~vV~Spgi~~~~--p~~~~a~~~g--i~v~~ 103 (473)
T PRK00141 63 --ISTAEASDQLDSFSLVVTSPGWRPDS--PLLVDAQSQG--LEVIG 103 (473)
T ss_pred --EeCCCchhHhcCCCEEEeCCCCCCCC--HHHHHHHHCC--Cceee
Confidence 333223456778999998753 2221 2234667888 88875
No 194
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.64 E-value=1.6 Score=49.32 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=29.3
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~------~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF------DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC------eEEEEeCC
Confidence 579999999999999999999997 89999855
No 195
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.56 E-value=0.61 Score=53.77 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=30.8
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
++..||.|||+|.+|+.++-.++..|+ ..|+|+|-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl-----~~i~LvDi 38 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNL-----GDVVLFDI 38 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-----CeEEEEeC
Confidence 355799999999999999999999998 46999984
No 196
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.54 E-value=0.31 Score=56.20 Aligned_cols=90 Identities=21% Similarity=0.323 Sum_probs=55.7
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCcccc-ccCCcccccccCccccchHHHHHHHHHHhCCCC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEK-SNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 580 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~-sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~ 580 (1093)
.|.+++|.|||+|.||+.+++-|...|+ ++...|.-.-.. .... |- .....|..+-+..
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm------~v~~~d~~~~~~~~~~~----------~~----~~~~~Ld~lL~~s 198 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGM------KVIGYDPYSPRERAGVD----------GV----VGVDSLDELLAEA 198 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCC------eEEEECCCCchhhhccc----------cc----eecccHHHHHhhC
Confidence 6789999999999999999999999999 888888522111 1000 00 0011122333345
Q ss_pred EEEEEecccCccccccchhhhhccC---CEEEEc
Q 001356 581 NTEALQIRANPETENVFNDTFWENL---NVVVNA 611 (1093)
Q Consensus 581 ~i~~~~~~v~~~~~~~~~~~f~~~~---DvVi~a 611 (1093)
.|....-.++++|..+++.+.|... -++|||
T Consensus 199 Div~lh~PlT~eT~g~i~~~~~a~MK~gailIN~ 232 (324)
T COG0111 199 DILTLHLPLTPETRGLINAEELAKMKPGAILINA 232 (324)
T ss_pred CEEEEcCCCCcchhcccCHHHHhhCCCCeEEEEC
Confidence 5666666666666666666555443 255555
No 197
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=90.51 E-value=0.8 Score=47.30 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=25.5
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEec
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
++|.+||+|..|+.++++|+..|. .+++.|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~------~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY------EVTVYD 31 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT------EEEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC------eEEeec
Confidence 479999999999999999999998 788876
No 198
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.38 E-value=0.66 Score=53.46 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=31.8
Q ss_pred hcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 107 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 107 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
.+.+|.|||+|.+|..++-.|++.|+..+.|+|-+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 46799999999999999999999998889999963
No 199
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.30 E-value=0.61 Score=55.63 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=32.3
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCc
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 544 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~ 544 (1093)
+.+++|+|+|+|.+|..+++.|..+|+ +++++|.|.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga------~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA------RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEcCCc
Confidence 578899999999999999999999998 799988554
No 200
>PRK07063 short chain dehydrogenase; Provisional
Probab=90.11 E-value=0.81 Score=50.39 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=45.1
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCC
Q 001356 502 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 580 (1093)
Q Consensus 502 ~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~ 580 (1093)
++.+++|+|.|+ ||||.++++.|+..|. +++++|.+ ..+.+.+++.+...++..
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~------~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~ 58 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA------AVALADLD-------------------AALAERAAAAIARDVAGA 58 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC-------------------HHHHHHHHHHHHhccCCc
Confidence 367889999995 8999999999999997 78887621 224444555555544455
Q ss_pred EEEEEecccCc
Q 001356 581 NTEALQIRANP 591 (1093)
Q Consensus 581 ~i~~~~~~v~~ 591 (1093)
++..+..++..
T Consensus 59 ~~~~~~~Dl~~ 69 (260)
T PRK07063 59 RVLAVPADVTD 69 (260)
T ss_pred eEEEEEccCCC
Confidence 66666655543
No 201
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=90.04 E-value=0.56 Score=53.88 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=29.8
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
+.+++|.|||.|.||.++++.|...|+ +++.+|.
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~------~V~~~~~ 167 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGF------PLRCWSR 167 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEeC
Confidence 456799999999999999999999998 7777764
No 202
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.03 E-value=1 Score=54.56 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=60.9
Q ss_pred HHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001356 104 RRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 183 (1093)
Q Consensus 104 ~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~ 183 (1093)
.-+..++|+|+|+|+.|..+|+.|...|. .+++.|..... ......++|.+.. +.+ .
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~g--i~~--~ 66 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEE------------------ELGEVSNELKELG--VKL--V 66 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCc------------------cchHHHHHHHhCC--CEE--E
Confidence 34567899999999999999999999997 78888854311 0001112344332 333 2
Q ss_pred ecccchhhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEe
Q 001356 184 TTELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIK 226 (1093)
Q Consensus 184 ~~~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~ 226 (1093)
.....++.+.++|+||.+.. +.. ..+-..+++.+ ||++.
T Consensus 67 ~~~~~~~~~~~~dlVV~Spgi~~~--~p~~~~a~~~~--i~i~s 106 (458)
T PRK01710 67 LGENYLDKLDGFDVIFKTPSMRID--SPELVKAKEEG--AYITS 106 (458)
T ss_pred eCCCChHHhccCCEEEECCCCCCC--chHHHHHHHcC--CcEEe
Confidence 23223456788999998753 221 23445667889 88874
No 203
>PLN02206 UDP-glucuronate decarboxylase
Probab=89.95 E-value=1.3 Score=53.46 Aligned_cols=104 Identities=12% Similarity=0.204 Sum_probs=63.0
Q ss_pred hcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 107 FASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 107 ~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
+..+|||.|. |-+|+.+++.|...|. +|..+|..... +.+.....+ .++ .++....
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~~~~------------------~~~~~~~~~--~~~--~~~~i~~ 174 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNFFTG------------------RKENVMHHF--SNP--NFELIRH 174 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCCCcc------------------chhhhhhhc--cCC--ceEEEEC
Confidence 4478999996 6699999999999996 46666642110 000000111 122 3344444
Q ss_pred ccchhhhcCCceEEEecC---------CH--------HHHHHHHHHHHhcCCCcceEeeeecceeEE
Q 001356 186 ELTKEKLSDFQAVVFTDI---------SL--------EKAVEFDDYCHNHQPPIAFIKSEVRGLFGN 235 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~---------~~--------~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~ 235 (1093)
++.+..+.++|+||-+.. +. .....+-++|++.+ ++||.+++...||.
T Consensus 175 D~~~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~SS~~VYg~ 239 (442)
T PLN02206 175 DVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGD 239 (442)
T ss_pred CccChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECChHHhCC
Confidence 444445567898885432 11 11245667899998 79999888777653
No 204
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=89.94 E-value=0.57 Score=56.14 Aligned_cols=73 Identities=25% Similarity=0.351 Sum_probs=51.0
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
+...+|+|+|+|++|..+++.|...|+.++++++.+. .|+...++.+. ..+... .
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~-------------------~ra~~la~~~g-----~~~~~~-~ 234 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL-------------------ERAEELAEEFG-----GEAIPL-D 234 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH-------------------HHHHHHHHHcC-----CcEeeH-H
Confidence 6789999999999999999999999999999987532 24444443331 111111 1
Q ss_pred ccchhhhcCCceEEEecCC
Q 001356 186 ELTKEKLSDFQAVVFTDIS 204 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~~ 204 (1093)
++ .+.+.++|+||.|+.+
T Consensus 235 ~~-~~~l~~aDvVI~aT~s 252 (423)
T PRK00045 235 EL-PEALAEADIVISSTGA 252 (423)
T ss_pred HH-HHHhccCCEEEECCCC
Confidence 11 2456789999998764
No 205
>PRK06197 short chain dehydrogenase; Provisional
Probab=89.93 E-value=0.95 Score=51.38 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=33.0
Q ss_pred cCHHHHHHhhcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeC
Q 001356 98 YGRETMRRLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 98 ~G~~~q~kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
|+...+..+.+++|+|.|+ ||+|.++|+.|+..|. ++.+++.
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 4444455678889999985 7899999999999997 5666654
No 206
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=89.93 E-value=0.69 Score=53.22 Aligned_cols=75 Identities=24% Similarity=0.337 Sum_probs=49.8
Q ss_pred cCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCC-EEE
Q 001356 505 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL-NTE 583 (1093)
Q Consensus 505 ~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~-~i~ 583 (1093)
..||.|||+|.+|+.++-.|+..|+. .+|.|+|- -+.|+...+.-+....|.. ++.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~----~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~ 62 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIA----DELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTK 62 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeE
Confidence 46999999999999999999999983 47999973 2334455555555554422 222
Q ss_pred EEecccCccccccchhhhhccCCEEEEcc
Q 001356 584 ALQIRANPETENVFNDTFWENLNVVVNAL 612 (1093)
Q Consensus 584 ~~~~~v~~~~~~~~~~~f~~~~DvVi~al 612 (1093)
... ++ + +-++++|+||.+.
T Consensus 63 i~~---~~-----~--~~~~~adivIita 81 (315)
T PRK00066 63 IYA---GD-----Y--SDCKDADLVVITA 81 (315)
T ss_pred EEe---CC-----H--HHhCCCCEEEEec
Confidence 221 11 1 2368999998774
No 207
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.81 E-value=0.74 Score=52.78 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=28.5
Q ss_pred cEEEEccCcchHHHHHHHHHcccccCCCcceEEec
Q 001356 507 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 507 ~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
||.|||+|.+|+.+|-.|+..|++ ++|.|+|
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~----~elvL~D 31 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLF----SEIVLID 31 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCC----CEEEEEe
Confidence 689999999999999999999984 6899997
No 208
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=89.69 E-value=0.94 Score=51.67 Aligned_cols=112 Identities=18% Similarity=0.194 Sum_probs=66.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHh-CCCcEEEEeecc-c
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL-NNAVAISALTTE-L 187 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eL-Np~V~V~~~~~~-l 187 (1093)
+|.|||+|..|..+|++|...|. +++++|.+.-....+. +.|-.-+....+.+... ++++-+...+.. .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 69999999999999999999996 6888887542211110 01211111122222232 355555554432 1
Q ss_pred ch----h---hhcCCceEEEec-CCHHHHHHHHHHHHhcCCCcceEeeeecce
Q 001356 188 TK----E---KLSDFQAVVFTD-ISLEKAVEFDDYCHNHQPPIAFIKSEVRGL 232 (1093)
Q Consensus 188 ~~----~---~l~~~dvVV~~~-~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~ 232 (1093)
.. . .+..-++||++. .+.....++.+.+++.+ +.|+.+.+.|-
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g--~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKG--IHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcC--CEEEeCCCCcC
Confidence 11 1 233346677664 35556667788888888 88887766553
No 209
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.68 E-value=2.1 Score=49.00 Aligned_cols=32 Identities=31% Similarity=0.376 Sum_probs=28.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
.+|.|||+|.+|+.+|..|+.+|. .++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 479999999999999999999996 78888853
No 210
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=89.60 E-value=1.2 Score=51.44 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=31.3
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeC
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
++..+|.|||+|.+|+.+|-.|+..|+..+.|+|-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi 38 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI 38 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 34579999999999999999999999867999986
No 211
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=89.59 E-value=0.94 Score=59.53 Aligned_cols=104 Identities=13% Similarity=0.232 Sum_probs=63.3
Q ss_pred hcCcEEEEccCcchHHHHHHHHHccccc-----CC---CcceEEecCCccccccCCcccccccCccccchHHHHHHHHHH
Q 001356 504 EEAKVFVVGSGALGCEFLKNLALMGVSC-----GN---QGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAAL 575 (1093)
Q Consensus 504 ~~~~VlivG~GgiG~e~lknLa~~Gv~~-----~~---~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~ 575 (1093)
+.++|+|+|||.+|..+++.|++.+-.. +. .-.++|.|.+ ..+++.+++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~---- 624 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVE---- 624 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHH----
Confidence 4679999999999999999999864210 00 0125555533 122332332
Q ss_pred hCCCCEEEEEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEecc
Q 001356 576 INPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESG 636 (1093)
Q Consensus 576 ~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sg 636 (1093)
..|++. +..-++.+ .+.+ ..++++.|+||+|+-.. .-..+...|.++++++++..
T Consensus 625 ~~~~~~--~v~lDv~D-~e~L--~~~v~~~DaVIsalP~~-~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 625 GIENAE--AVQLDVSD-SESL--LKYVSQVDVVISLLPAS-CHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred hcCCCc--eEEeecCC-HHHH--HHhhcCCCEEEECCCch-hhHHHHHHHHHcCCCEEECc
Confidence 234432 23322322 1222 23457899999999873 34667889999999998643
No 212
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=89.59 E-value=0.7 Score=53.07 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=31.4
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.|.+++|.|||.|.||.++++.+...|+ ++..+|.
T Consensus 142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm------~V~~~d~ 176 (311)
T PRK08410 142 EIKGKKWGIIGLGTIGKRVAKIAQAFGA------KVVYYST 176 (311)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhcCC------EEEEECC
Confidence 6788999999999999999999987776 7888886
No 213
>PRK06197 short chain dehydrogenase; Provisional
Probab=89.56 E-value=0.69 Score=52.53 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=30.2
Q ss_pred HHHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 501 KKLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 501 ~~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
..+.+++|+|.|+ ||||.++++.|+..|. ++++++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~------~vi~~~r 48 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA------HVVLAVR 48 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeC
Confidence 3567789999995 9999999999999997 6777764
No 214
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=89.53 E-value=1.2 Score=51.46 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=55.5
Q ss_pred cCeEEEEcCChhHHHHHHHHH-HhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 108 ASNILISGMQGLGAEIAKNLI-LAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLv-laGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
.++|+|+|+|+.|...++.|. ..|+.+++|++.+ ..|+++.++++++..+ +++.... +
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~~v~~~~-~ 187 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLLG-IDVTAAT-D 187 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEeC-C
Confidence 468999999999999999997 5789999998642 2478888888765432 4443322 1
Q ss_pred cchhhhcCCceEEEecCC
Q 001356 187 LTKEKLSDFQAVVFTDIS 204 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~~~ 204 (1093)
-++.+.++|+||.|+.+
T Consensus 188 -~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 188 -PRAAMSGADIIVTTTPS 204 (326)
T ss_pred -HHHHhccCCEEEEecCC
Confidence 23567899999998865
No 215
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.51 E-value=1.6 Score=46.83 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=31.7
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
.|+.++|+|+|+|.+|..+|+.|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4778999999999999999999999997 67787754
No 216
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.49 E-value=0.54 Score=54.52 Aligned_cols=35 Identities=11% Similarity=0.258 Sum_probs=31.6
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.|.+++|.|||+|.||.++++.|...|. +++.+|.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~------~V~~~d~ 181 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM------RILYYSR 181 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5789999999999999999999998887 7888874
No 217
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=89.47 E-value=0.7 Score=48.26 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=31.3
Q ss_pred HhhcCeEEEEcCChh-HHHHHHHHHHhCCceEEEEeC
Q 001356 105 RLFASNILISGMQGL-GAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 105 kL~~s~VlIiG~ggl-GseiaKnLvlaGVg~itLvD~ 140 (1093)
.|.+++|+|+|.|.. |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 578999999999984 8889999999999 6988874
No 218
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=89.45 E-value=0.9 Score=48.22 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=52.7
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCC
Q 001356 502 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 580 (1093)
Q Consensus 502 ~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~ 580 (1093)
.+++++++|+|+ |++|..+++.|+..|. ++++++.+ ..|++.+++.+.... ..
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~------~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~ 78 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA------RVVLVGRD-------------------LERAQKAADSLRARF-GE 78 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC------EEEEEcCC-------------------HHHHHHHHHHHHhhc-CC
Confidence 457789999996 9999999999998875 78887633 235555555554322 23
Q ss_pred EEEEEecccCccccccchhhhhccCCEEEEccCCH
Q 001356 581 NTEALQIRANPETENVFNDTFWENLNVVVNALDNV 615 (1093)
Q Consensus 581 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~ 615 (1093)
.+.... +.. .+.+ .+.+.++|+||+|+-..
T Consensus 79 ~~~~~~--~~~-~~~~--~~~~~~~diVi~at~~g 108 (194)
T cd01078 79 GVGAVE--TSD-DAAR--AAAIKGADVVFAAGAAG 108 (194)
T ss_pred cEEEee--CCC-HHHH--HHHHhcCCEEEECCCCC
Confidence 333321 111 1111 24567899999987543
No 219
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.37 E-value=1.2 Score=52.91 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=31.1
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
+.+.+|+|+|+|.+|..+++.+..+|. +++++|.|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga------~ViV~d~d 234 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA------RVIVTEVD 234 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEECC
Confidence 567899999999999999999999998 68888754
No 220
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.37 E-value=2.1 Score=48.32 Aligned_cols=33 Identities=27% Similarity=0.318 Sum_probs=29.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCc
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
.+|.|||+|-+|..+|..|+..|. .++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 479999999999999999999997 788998643
No 221
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.28 E-value=1.3 Score=53.91 Aligned_cols=94 Identities=18% Similarity=0.120 Sum_probs=59.1
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
+...+|+|+|+|++|.++|..|...|. +++++|.... ..+....+.|++.+ +.+.. .
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~------------------~~~~~~~~~l~~~g--v~~~~--~ 70 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDD------------------ERHRALAAILEALG--ATVRL--G 70 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch------------------hhhHHHHHHHHHcC--CEEEE--C
Confidence 457799999999999999999999997 5999985421 12223344565543 44432 2
Q ss_pred ccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEe
Q 001356 186 ELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIK 226 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~ 226 (1093)
.-. +....+|+||.+..-.+. ..+-..+++.| +|++.
T Consensus 71 ~~~-~~~~~~D~Vv~s~Gi~~~-~~~~~~a~~~g--i~v~~ 107 (480)
T PRK01438 71 PGP-TLPEDTDLVVTSPGWRPD-APLLAAAADAG--IPVWG 107 (480)
T ss_pred CCc-cccCCCCEEEECCCcCCC-CHHHHHHHHCC--Ceecc
Confidence 111 134568999987642111 12334567888 78764
No 222
>PRK07062 short chain dehydrogenase; Provisional
Probab=89.20 E-value=1.3 Score=48.80 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=45.7
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCE
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 581 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~ 581 (1093)
++++.++|.|+ ||||.++++.|+..|. ++++++.+. .+.+.+++.+....|..+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~------~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~ 60 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA------SVAICGRDE-------------------ERLASAEARLREKFPGAR 60 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEeCCH-------------------HHHHHHHHHHHhhCCCce
Confidence 56788999996 8999999999999997 788876432 234445555666666666
Q ss_pred EEEEecccCc
Q 001356 582 TEALQIRANP 591 (1093)
Q Consensus 582 i~~~~~~v~~ 591 (1093)
+..+..++..
T Consensus 61 ~~~~~~D~~~ 70 (265)
T PRK07062 61 LLAARCDVLD 70 (265)
T ss_pred EEEEEecCCC
Confidence 6666655543
No 223
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=89.19 E-value=2.1 Score=41.89 Aligned_cols=89 Identities=22% Similarity=0.197 Sum_probs=52.0
Q ss_pred eEEEEc-CChhHHHHHHHHHHh-CCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCC----CcEEEEe
Q 001356 110 NILISG-MQGLGAEIAKNLILA-GVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNN----AVAISAL 183 (1093)
Q Consensus 110 ~VlIiG-~gglGseiaKnLvla-GVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp----~V~V~~~ 183 (1093)
||.|+| .|-+|.++++.|... .+.-+.++.. ....|+ .+.+..| .-.+...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~---------------~~~~g~--------~~~~~~~~~~~~~~~~~~ 57 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSS---------------SRSAGK--------PLSEVFPHPKGFEDLSVE 57 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEES---------------TTTTTS--------BHHHTTGGGTTTEEEBEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeee---------------ccccCC--------eeehhccccccccceeEe
Confidence 699999 666999999998872 2222333332 112444 3334443 2233333
Q ss_pred ecccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEe
Q 001356 184 TTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIK 226 (1093)
Q Consensus 184 ~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~ 226 (1093)
. .+.+.+.+.|+|++|..+... ..+...+.+.| +++|.
T Consensus 58 ~--~~~~~~~~~Dvvf~a~~~~~~-~~~~~~~~~~g--~~ViD 95 (121)
T PF01118_consen 58 D--ADPEELSDVDVVFLALPHGAS-KELAPKLLKAG--IKVID 95 (121)
T ss_dssp E--TSGHHHTTESEEEE-SCHHHH-HHHHHHHHHTT--SEEEE
T ss_pred e--cchhHhhcCCEEEecCchhHH-HHHHHHHhhCC--cEEEe
Confidence 3 445566899999999865444 44555557777 65555
No 224
>PRK06487 glycerate dehydrogenase; Provisional
Probab=88.98 E-value=0.68 Score=53.34 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=30.9
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.|.+++|.|||.|.||.++++.|...|+ +++.+|.
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm------~V~~~~~ 179 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGM------RVLIGQL 179 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCC------EEEEECC
Confidence 5889999999999999999999988887 7777764
No 225
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=88.97 E-value=1.3 Score=49.81 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=47.2
Q ss_pred hcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 107 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 107 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
..++|+|+|+||+|..++..|...|. +++++|.+ ..|++.+++.+.... . +... .
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~-------------------~~~~~~la~~~~~~~-~--~~~~--~ 170 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT-------------------VSKAEELAERFQRYG-E--IQAF--S 170 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHhhcC-c--eEEe--c
Confidence 46789999999999999999999996 89988742 236666666664432 1 1111 1
Q ss_pred cchhhhcCCceEEEec
Q 001356 187 LTKEKLSDFQAVVFTD 202 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~ 202 (1093)
+.+..+.++|+||.|+
T Consensus 171 ~~~~~~~~~DivInat 186 (270)
T TIGR00507 171 MDELPLHRVDLIINAT 186 (270)
T ss_pred hhhhcccCccEEEECC
Confidence 1222234678887776
No 226
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=88.96 E-value=0.63 Score=53.07 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=28.2
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCCc
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
+|.|||+|..|..++.+|+..|. .++++|.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 69999999999999999999995 677888654
No 227
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=88.91 E-value=1.1 Score=50.38 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=28.4
Q ss_pred hcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEec
Q 001356 504 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 504 ~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
.+++++|+|+||+|..++..|+..|. +++++|
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~------~v~v~~ 147 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC------NVIIAN 147 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC------EEEEEe
Confidence 46789999999999999999999886 788876
No 228
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=88.85 E-value=1 Score=53.04 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=32.2
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.|.+++|.|||+|.||..+++.|...|+ ++...|+
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~------~V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI------KTLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5789999999999999999999999998 8888885
No 229
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.77 E-value=1.9 Score=51.90 Aligned_cols=94 Identities=18% Similarity=0.124 Sum_probs=61.5
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
+...+|+|+|+|.+|..+++.|...|. .++++|.+.= + .+.+++..+.+.+ ...
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~-------------------~----~~~~~~~~~~~~~--i~g 282 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE-------------------R----AEELAEELPNTLV--LHG 282 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-------------------H----HHHHHHHCCCCeE--EEC
Confidence 557899999999999999999999888 5788875321 1 2233333333332 222
Q ss_pred cc------chhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEee
Q 001356 186 EL------TKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKS 227 (1093)
Q Consensus 186 ~l------~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~ 227 (1093)
+. .+..+.+++.||.+..+......+...|++.+ .+-|.+
T Consensus 283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~--~~~ii~ 328 (453)
T PRK09496 283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLG--AKKVIA 328 (453)
T ss_pred CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhC--CCeEEE
Confidence 22 22346688999888776565566667788887 444443
No 230
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=88.76 E-value=1.6 Score=52.45 Aligned_cols=103 Identities=13% Similarity=0.213 Sum_probs=63.0
Q ss_pred cCeEEEEcCC-hhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 108 ASNILISGMQ-GLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 108 ~s~VlIiG~g-glGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
..+|+|.|.. -+|+++++.|...|. +|+.+|..... . + . .+..+...-.++....+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~----------------~-~-~----~~~~~~~~~~~~~~~~D 176 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNFFTG----------------R-K-E----NLVHLFGNPRFELIRHD 176 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCc----------------c-H-h----HhhhhccCCceEEEECc
Confidence 3579999965 599999999999986 67777743210 0 0 0 01111111233444444
Q ss_pred cchhhhcCCceEEEecC---------C--------HHHHHHHHHHHHhcCCCcceEeeeecceeEE
Q 001356 187 LTKEKLSDFQAVVFTDI---------S--------LEKAVEFDDYCHNHQPPIAFIKSEVRGLFGN 235 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~~---------~--------~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~ 235 (1093)
+.+..+.++|+||-+.. + ......+-+.|++++ +.||.+++...||.
T Consensus 177 i~~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g--~r~V~~SS~~VYg~ 240 (436)
T PLN02166 177 VVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--ARFLLTSTSEVYGD 240 (436)
T ss_pred cccccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECcHHHhCC
Confidence 44445667898885432 1 111345667899988 78999888777763
No 231
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.67 E-value=1.6 Score=49.42 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=29.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCc
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
.+|.|||+|..|..+|.+|+++|. .++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999999999999997 799999754
No 232
>PRK07574 formate dehydrogenase; Provisional
Probab=88.63 E-value=0.52 Score=55.58 Aligned_cols=35 Identities=40% Similarity=0.568 Sum_probs=31.7
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.|.+++|.|||+|.||.++++.|...|+ +++.+|.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~------~V~~~dr 223 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV------KLHYTDR 223 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5888999999999999999999999998 7888873
No 233
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=88.61 E-value=3.4 Score=42.78 Aligned_cols=93 Identities=22% Similarity=0.282 Sum_probs=59.9
Q ss_pred EEEEcC-ChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecccc-
Q 001356 111 ILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT- 188 (1093)
Q Consensus 111 VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l~- 188 (1093)
|+|+|+ |.+|..+++.|+..| .+++.+=. + ..|++ + .+.+++ ...++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R----------~---------~~~~~-------~-~~~~~~--~~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVR----------S---------PSKAE-------D-SPGVEI--IQGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEES----------S---------GGGHH-------H-CTTEEE--EESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEec----------C---------chhcc-------c-cccccc--ceeeehh
Confidence 799997 779999999999999 46665321 1 11222 2 554444 444332
Q ss_pred ----hhhhcCCceEEEecCC----HHHHHHHHHHHHhcCCCcceEeeeecceeE
Q 001356 189 ----KEKLSDFQAVVFTDIS----LEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 234 (1093)
Q Consensus 189 ----~~~l~~~dvVV~~~~~----~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G 234 (1093)
.+.++++|+||.+..+ ......+-+.|++.+.+ .+|..++.|.++
T Consensus 51 ~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~-~~v~~s~~~~~~ 103 (183)
T PF13460_consen 51 PDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVK-RVVYLSSAGVYR 103 (183)
T ss_dssp HHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSS-EEEEEEETTGTT
T ss_pred hhhhhhhhhhcchhhhhhhhhcccccccccccccccccccc-cceeeeccccCC
Confidence 1357789999988652 44566777888888832 566655565443
No 234
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=88.58 E-value=1.4 Score=43.59 Aligned_cols=94 Identities=20% Similarity=0.303 Sum_probs=58.0
Q ss_pred eEEEEcC-ChhHHHHHHHHHH-hCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhC-CCcEEEEeecc
Q 001356 110 NILISGM-QGLGAEIAKNLIL-AGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN-NAVAISALTTE 186 (1093)
Q Consensus 110 ~VlIiG~-gglGseiaKnLvl-aGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLN-p~V~V~~~~~~ 186 (1093)
||.|+|+ |-.|.++++.+.. .|+.=+..+|... ++.. ..|+| .+..+. ..+.+. .+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~~~------g~d~g---------~~~~~~~~~~~v~---~~ 60 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SAKV------GKDVG---------ELAGIGPLGVPVT---DD 60 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---STTT------TSBCH---------HHCTSST-SSBEB---S-
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---cccc------cchhh---------hhhCcCCcccccc---hh
Confidence 7999999 8899999999998 7776666777643 1111 12333 111122 122222 22
Q ss_pred cchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeee
Q 001356 187 LTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSE 228 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~ 228 (1093)
+ ++.+..+|+||+.+ ..+.....-++|.+++ +|+|.+.
T Consensus 61 l-~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g--~~~ViGT 98 (124)
T PF01113_consen 61 L-EELLEEADVVIDFT-NPDAVYDNLEYALKHG--VPLVIGT 98 (124)
T ss_dssp H-HHHTTH-SEEEEES--HHHHHHHHHHHHHHT---EEEEE-
T ss_pred H-HHhcccCCEEEEcC-ChHHhHHHHHHHHhCC--CCEEEEC
Confidence 2 34556689999988 6667777888888989 8888744
No 235
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=88.51 E-value=0.93 Score=52.35 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=50.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHhCC-c-----eEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhC-CCcE-
Q 001356 109 SNILISGM-QGLGAEIAKNLILAGV-K-----SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN-NAVA- 179 (1093)
Q Consensus 109 s~VlIiG~-gglGseiaKnLvlaGV-g-----~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLN-p~V~- 179 (1093)
.+|.|||+ |.+|+.+|-.|+..|+ + +|.|+|-.. .+.|++..+.-|.... |...
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~-----------------~~~~a~g~a~Dl~~~~~~~~~~ 66 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP-----------------AMKALEGVAMELEDCAFPLLAG 66 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC-----------------cccccchHHHHHhhccccccCC
Confidence 58999998 9999999999999987 4 688887421 1223444444555554 3322
Q ss_pred EEEeecccchhhhcCCceEEEecC
Q 001356 180 ISALTTELTKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 180 V~~~~~~l~~~~l~~~dvVV~~~~ 203 (1093)
+++..+ +.+-+++.|+||.|..
T Consensus 67 ~~i~~~--~~~~~~daDvVVitAG 88 (323)
T TIGR01759 67 VVATTD--PEEAFKDVDAALLVGA 88 (323)
T ss_pred cEEecC--hHHHhCCCCEEEEeCC
Confidence 222211 3457889999998865
No 236
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.51 E-value=0.64 Score=52.63 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=30.3
Q ss_pred HHhcCcEEEEccCc-chHHHHHHHHHcccccCCCcceEEec
Q 001356 502 KLEEAKVFVVGSGA-LGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 502 ~L~~~~VlivG~Gg-iG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
.+++++|+|+|+|+ +|..++..|...|. .+++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga------tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA------TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC------EEEEEe
Confidence 46788999999999 99999999999886 788875
No 237
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.42 E-value=2.4 Score=46.56 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=48.1
Q ss_pred hcCeEEEEcCChhHHHHHHHHHHhCC---ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001356 107 FASNILISGMQGLGAEIAKNLILAGV---KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 183 (1093)
Q Consensus 107 ~~s~VlIiG~gglGseiaKnLvlaGV---g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~ 183 (1093)
...+|.|||+|.+|..+++.|...|. ..+.+++.. ...|++ .+.+..+ +. ..
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~------------------~~~~~~----~~~~~~~-~~--~~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS------------------NVEKLD----QLQARYN-VS--TT 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC------------------CHHHHH----HHHHHcC-cE--Ee
Confidence 35689999999999999999998873 224333321 012332 2322222 32 22
Q ss_pred ecccchhhhcCCceEEEecCCHHHHHHHHHH
Q 001356 184 TTELTKEKLSDFQAVVFTDISLEKAVEFDDY 214 (1093)
Q Consensus 184 ~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~ 214 (1093)
.+ ..+.+.+.|+||.|..+......+.++
T Consensus 58 -~~-~~~~~~~~DiViiavp~~~~~~v~~~l 86 (245)
T PRK07634 58 -TD-WKQHVTSVDTIVLAMPPSAHEELLAEL 86 (245)
T ss_pred -CC-hHHHHhcCCEEEEecCHHHHHHHHHHH
Confidence 12 234567899999998765544444443
No 238
>PRK07831 short chain dehydrogenase; Provisional
Probab=88.37 E-value=1.6 Score=48.25 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=27.9
Q ss_pred HhcCcEEEEcc-C-cchHHHHHHHHHcccccCCCcceEEec
Q 001356 503 LEEAKVFVVGS-G-ALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 503 L~~~~VlivG~-G-giG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
+.+++++|.|+ | |||..+++.|+..|. +++++|
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~------~V~~~~ 49 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGA------RVVISD 49 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCC------EEEEEe
Confidence 44678999997 6 799999999999998 577765
No 239
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.29 E-value=2.6 Score=48.71 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=62.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCC-----cEEEEe
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA-----VAISAL 183 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~-----V~V~~~ 183 (1093)
++|.|||+|-.|+.+|.+++.+|. .++++|.+.-.... .+.+.....+.+.+..+. -.++..
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 74 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAA------------LRANVANAWPALERQGLAPGASPARLRFV 74 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHH------------HHHHHHHHHHHHHHcCCChhhHHhhceec
Confidence 579999999999999999999997 78999975421111 112222233333332211 011211
Q ss_pred ecccchhhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEeeeecce
Q 001356 184 TTELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGL 232 (1093)
Q Consensus 184 ~~~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~~~~~G~ 232 (1093)
. ++ ++.+.+.|+|+-+.. +.+.+..+-+-..+.-++=.+|.+++.|+
T Consensus 75 ~-~l-~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l 122 (321)
T PRK07066 75 A-TI-EACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGL 122 (321)
T ss_pred C-CH-HHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCcc
Confidence 1 11 256789999998864 55555444333322221123677666665
No 240
>PRK06141 ornithine cyclodeaminase; Validated
Probab=88.24 E-value=1.4 Score=50.59 Aligned_cols=77 Identities=18% Similarity=0.183 Sum_probs=55.1
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHH-hCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001356 105 RLFASNILISGMQGLGAEIAKNLIL-AGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 183 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvl-aGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~ 183 (1093)
+...++|+|||+|+.|..+++.+.+ .|+.+|++++.+ ..|++..++.+++... .+...
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~--~~~~~ 180 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGF--DAEVV 180 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--ceEEe
Confidence 3456899999999999999997665 688999998742 3477888888776422 23332
Q ss_pred ecccchhhhcCCceEEEecCC
Q 001356 184 TTELTKEKLSDFQAVVFTDIS 204 (1093)
Q Consensus 184 ~~~l~~~~l~~~dvVV~~~~~ 204 (1093)
. + .++.+.++|+||+|+.+
T Consensus 181 ~-~-~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 181 T-D-LEAAVRQADIISCATLS 199 (314)
T ss_pred C-C-HHHHHhcCCEEEEeeCC
Confidence 1 1 23467899999888764
No 241
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=88.18 E-value=2 Score=52.36 Aligned_cols=93 Identities=16% Similarity=0.247 Sum_probs=68.3
Q ss_pred hhhhhhhhhccC-HHHHHHhhcCeEEEEcCCh-hHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHH
Q 001356 88 EDLHSRQLAVYG-RETMRRLFASNILISGMQG-LGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRAL 165 (1093)
Q Consensus 88 ~~~YsRQi~l~G-~~~q~kL~~s~VlIiG~gg-lGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~ 165 (1093)
+++..|+---.- ..-+.-+.+++|+|-|+|| +|+|+++.++..++++|.++|.+ +++-.
T Consensus 229 eDLLgR~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~-------------------E~~~~ 289 (588)
T COG1086 229 EDLLGRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRD-------------------EYKLY 289 (588)
T ss_pred HHHhCCCCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCc-------------------hHHHH
Confidence 556667654433 3445678899999999877 99999999999999999999863 44555
Q ss_pred HHHHHHHHhCCCcEEEEeecccch-----hhhcC--CceEE
Q 001356 166 ASIQKLQELNNAVAISALTTELTK-----EKLSD--FQAVV 199 (1093)
Q Consensus 166 a~~~~L~eLNp~V~V~~~~~~l~~-----~~l~~--~dvVV 199 (1093)
.+...|++..|..++..+-.++-+ ..+.+ .|+|+
T Consensus 290 ~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~Vf 330 (588)
T COG1086 290 LIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVF 330 (588)
T ss_pred HHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceEE
Confidence 666788888888888777666532 34555 56666
No 242
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=88.09 E-value=1.3 Score=49.38 Aligned_cols=91 Identities=21% Similarity=0.227 Sum_probs=0.0
Q ss_pred CcEEEEcc-CcchHHHHHHHHHc-ccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEE
Q 001356 506 AKVFVVGS-GALGCEFLKNLALM-GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 583 (1093)
Q Consensus 506 ~~VlivG~-GgiG~e~lknLa~~-Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~ 583 (1093)
.||.|+|| |.+|..+++.+... ++ --..++|.+.-...-. ....+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~-----elvav~d~~~~~~~~~---------------------------~~~~i~ 49 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDL-----ELVAAVDRPGSPLVGQ---------------------------GALGVA 49 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCC-----EEEEEEecCCcccccc---------------------------CCCCcc
Q ss_pred EEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccccCc
Q 001356 584 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGTLGA 640 (1093)
Q Consensus 584 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt~G~ 640 (1093)
.+..- ++.++.+|+||+++ .+.+-..+-..|.+.++|++ .|+.|+
T Consensus 50 ~~~dl----------~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vv-igttG~ 94 (257)
T PRK00048 50 ITDDL----------EAVLADADVLIDFT-TPEATLENLEFALEHGKPLV-IGTTGF 94 (257)
T ss_pred ccCCH----------HHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEE-EECCCC
No 243
>PRK06932 glycerate dehydrogenase; Provisional
Probab=88.08 E-value=0.87 Score=52.40 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=30.3
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEec
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
.|.+++|.|||.|.||.++++.|...|+ +++.+|
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~------~V~~~~ 177 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGM------KVLYAE 177 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCC------EEEEEC
Confidence 5889999999999999999999988887 677665
No 244
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.02 E-value=1.7 Score=50.01 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=29.8
Q ss_pred cCcEEEEccCcchHHHHHHHHHcccccCCCcceEEec
Q 001356 505 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 505 ~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
..||.|||+|.+|+.++-.|+..|++ .+|.|+|
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~----~el~LiD 35 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLA----DELVLVD 35 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCC----CEEEEEe
Confidence 45899999999999999999999984 5799998
No 245
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=88.00 E-value=3.4 Score=47.52 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=33.2
Q ss_pred HHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeC
Q 001356 102 TMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 102 ~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
....|++++|.|||+|.+|..+|+||..+|+ ++++.|.
T Consensus 10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r 47 (335)
T PRK13403 10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVR 47 (335)
T ss_pred ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEEC
Confidence 3568999999999999999999999999999 6666653
No 246
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=87.95 E-value=1.6 Score=57.52 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=58.8
Q ss_pred hcCeEEEEcCChhHHHHHHHHHHhC-Cc------------eEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHH
Q 001356 107 FASNILISGMQGLGAEIAKNLILAG-VK------------SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQE 173 (1093)
Q Consensus 107 ~~s~VlIiG~gglGseiaKnLvlaG-Vg------------~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~e 173 (1093)
+.++|+|+|+|.+|..+|.+|+..+ +. .+++.|. ...+|+.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~-------------------~~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL-------------------YLKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC-------------------CHHHHHHHHHh---
Confidence 4679999999999999999998753 32 2344332 22344433333
Q ss_pred hCCCcEEEEe-ecccc--hhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEee
Q 001356 174 LNNAVAISAL-TTELT--KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKS 227 (1093)
Q Consensus 174 LNp~V~V~~~-~~~l~--~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~ 227 (1093)
.|.++.... ..+.. .+.+++.|+||.|... ..-..+...|-++| +.++..
T Consensus 626 -~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaG--kHvv~e 678 (1042)
T PLN02819 626 -IENAEAVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELK--KHLVTA 678 (1042)
T ss_pred -cCCCceEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcC--CCEEEC
Confidence 344322221 11211 1345789999998854 33467888999999 777764
No 247
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=87.95 E-value=1.8 Score=54.56 Aligned_cols=86 Identities=14% Similarity=0.264 Sum_probs=61.8
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001356 108 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 187 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l 187 (1093)
..+|+|+|+|.+|..+++.|...|+ .++++|.|.- |++ .+++. ..+ ++..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~--g~~--v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIE----TLRKF--GMK--VFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhc--CCe--EEEEeC
Confidence 5799999999999999999999998 6888887542 222 23332 222 233332
Q ss_pred c-h-----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCC
Q 001356 188 T-K-----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPP 221 (1093)
Q Consensus 188 ~-~-----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ 221 (1093)
+ + .-+++.++||++.++.+....+-..+|++.+.
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~ 491 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPH 491 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 2 2 34567899999999888888888899988743
No 248
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.93 E-value=1 Score=47.47 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=27.3
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCCc
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
+|.|+|+|..|..||-.++++|. .++|+|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence 68999999999999999999996 899999744
No 249
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=87.80 E-value=0.87 Score=41.82 Aligned_cols=38 Identities=32% Similarity=0.401 Sum_probs=34.5
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCc
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
.+..++++|+|+|+.|..++..|...|...++++|.|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi 57 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDI 57 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 47789999999999999999999999989999999843
No 250
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.67 E-value=1.3 Score=50.76 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=29.6
Q ss_pred cCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 505 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 505 ~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
.++|.|||+|.+|+.+++.|+..|. ++++.|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~------~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH------RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4689999999999999999999997 78888865
No 251
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.64 E-value=0.86 Score=43.78 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=56.3
Q ss_pred EEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEEEec
Q 001356 508 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQI 587 (1093)
Q Consensus 508 VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~~~ 587 (1093)
|+|+|+|.+|-++++.|...|. +++++|.|.-. .+.++... +..+..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~------~vvvid~d~~~-----------------------~~~~~~~~----~~~i~g 47 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGI------DVVVIDRDPER-----------------------VEELREEG----VEVIYG 47 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS------EEEEEESSHHH-----------------------HHHHHHTT----SEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCCC------EEEEEECCcHH-----------------------HHHHHhcc----cccccc
Confidence 6899999999999999999654 89999966422 22222222 234444
Q ss_pred ccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccc
Q 001356 588 RANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY 627 (1093)
Q Consensus 588 ~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~ 627 (1093)
.... ...+...-+++++.|+.++++...-..+-..++.
T Consensus 48 d~~~--~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 48 DATD--PEVLERAGIEKADAVVILTDDDEENLLIALLARE 85 (116)
T ss_dssp -TTS--HHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHH
T ss_pred cchh--hhHHhhcCccccCEEEEccCCHHHHHHHHHHHHH
Confidence 4432 2233344567899999999988777777666655
No 252
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=87.58 E-value=0.9 Score=51.90 Aligned_cols=75 Identities=20% Similarity=0.238 Sum_probs=49.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCc-eEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcE--EEEeec
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVK-SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVA--ISALTT 185 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg-~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~--V~~~~~ 185 (1093)
.+|.|+|+|.+|+.+|-.|+.-+++ .+.|+|-. +.+++..+.-|....+... +.+...
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~-------------------~~~~~G~a~DL~~~~~~~~~~~~i~~~ 61 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN-------------------EEKAEGVALDLSHAAAPLGSDVKITGD 61 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc-------------------cccccchhcchhhcchhccCceEEecC
Confidence 3799999999999999999999999 99999853 1122222233443333222 222221
Q ss_pred ccchhhhcCCceEEEecC
Q 001356 186 ELTKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~ 203 (1093)
-+.+.+++.|+||.+..
T Consensus 62 -~~y~~~~~aDiVvitAG 78 (313)
T COG0039 62 -GDYEDLKGADIVVITAG 78 (313)
T ss_pred -CChhhhcCCCEEEEeCC
Confidence 12356789999998763
No 253
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=87.52 E-value=0.96 Score=40.72 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=38.7
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhC
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN 175 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLN 175 (1093)
||+|||.|.+|+|+|..|...|. ++||++...- ++ ...+..-+..+.+.|++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~---------~~--~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR---------LL--PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS---------SS--TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch---------hh--hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999995 8898876332 11 1223334455666777664
No 254
>PTZ00325 malate dehydrogenase; Provisional
Probab=87.52 E-value=1.1 Score=51.70 Aligned_cols=77 Identities=13% Similarity=0.146 Sum_probs=50.1
Q ss_pred hhcCeEEEEcC-ChhHHHHHHHHHHhCC-ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001356 106 LFASNILISGM-QGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 183 (1093)
Q Consensus 106 L~~s~VlIiG~-gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~ 183 (1093)
++-.+|.|+|+ |.+|+.++-.|+..|. .++.|+|-+.. +++ +.-|+..++.+.+...
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~-------------------~g~--a~Dl~~~~~~~~v~~~ 64 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGA-------------------PGV--AADLSHIDTPAKVTGY 64 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCC-------------------ccc--ccchhhcCcCceEEEe
Confidence 34459999999 9999999999987776 47999996211 111 1133344444555443
Q ss_pred ecccc-hhhhcCCceEEEecC
Q 001356 184 TTELT-KEKLSDFQAVVFTDI 203 (1093)
Q Consensus 184 ~~~l~-~~~l~~~dvVV~~~~ 203 (1093)
...-+ .+.+++.|+||.+..
T Consensus 65 td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 65 ADGELWEKALRGADLVLICAG 85 (321)
T ss_pred cCCCchHHHhCCCCEEEECCC
Confidence 32112 467889999998754
No 255
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=87.48 E-value=0.75 Score=42.72 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=53.9
Q ss_pred cEEEEccCcchHHHHHHHHHcccccCCCcceEEe-cCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEEE
Q 001356 507 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTIT-DDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEAL 585 (1093)
Q Consensus 507 ~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~li-D~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~ 585 (1093)
||.|||+|.+|..+++.|+..|+ ...+++++ +.+ ..|+ +.+.+..+ +.+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~---~~~~v~~~~~r~-------------------~~~~----~~~~~~~~-~~~~~~ 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGI---KPHEVIIVSSRS-------------------PEKA----AELAKEYG-VQATAD 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS----GGEEEEEEESS-------------------HHHH----HHHHHHCT-TEEESE
T ss_pred CEEEECCCHHHHHHHHHHHHCCC---CceeEEeeccCc-------------------HHHH----HHHHHhhc-cccccC
Confidence 68999999999999999999996 22566654 411 1122 22223333 111110
Q ss_pred ecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhc-ccccccceEe
Q 001356 586 QIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQR-CLYFQKPLLE 634 (1093)
Q Consensus 586 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~-c~~~~~pli~ 634 (1093)
+ +.+..+..|+||.|+........+... ....++-+|+
T Consensus 54 ------~-----~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis 92 (96)
T PF03807_consen 54 ------D-----NEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVIS 92 (96)
T ss_dssp ------E-----HHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred ------C-----hHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEE
Confidence 1 135567899999999988887777666 2333444553
No 256
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=87.44 E-value=0.76 Score=54.19 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=32.1
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.|.+++|.|||+|.||..+++.|...|+ ++.+.|+
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~------~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW------KVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 4778999999999999999999999998 8888885
No 257
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.44 E-value=5.8 Score=44.96 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=29.5
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 108 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
-++|.|||+|..|..+|.+|+.+|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999997 78888864
No 258
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.42 E-value=0.69 Score=52.92 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=31.7
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
.|.+++|.|||.|.||.++++.|...|+ +++.+|..
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~------~V~~~~r~ 154 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM------NIYAYTRS 154 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC------EEEEECCC
Confidence 5789999999999999999998888887 88888853
No 259
>PLN03139 formate dehydrogenase; Provisional
Probab=87.42 E-value=0.59 Score=55.15 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=31.6
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.|.+++|.|||+|.||..+++.|..+|+ +++.+|.
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~------~V~~~d~ 230 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNC------NLLYHDR 230 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCC------EEEEECC
Confidence 5889999999999999999999999998 7888774
No 260
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=87.40 E-value=2.2 Score=48.81 Aligned_cols=33 Identities=15% Similarity=0.314 Sum_probs=29.3
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhCC-ceEEEEeC
Q 001356 108 ASNILISGMQGLGAEIAKNLILAGV-KSVTLHDE 140 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~ 140 (1093)
..+|+|||+|.+|..+++.|...|. .+++++|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 4689999999999999999999997 47888875
No 261
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=87.30 E-value=0.62 Score=42.80 Aligned_cols=37 Identities=35% Similarity=0.461 Sum_probs=32.9
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
.+..++++|+|+|++|..++..|...|. .++++.|.|
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~-----~~v~v~~rd 56 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGG-----KKVVLCDRD 56 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-----CEEEEEcCC
Confidence 3678899999999999999999999976 689999873
No 262
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=87.27 E-value=4.6 Score=43.79 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=49.4
Q ss_pred eEEEEc-CChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCC--CcEEEEeecc
Q 001356 110 NILISG-MQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNN--AVAISALTTE 186 (1093)
Q Consensus 110 ~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp--~V~V~~~~~~ 186 (1093)
+|.||| +|.+|+.+++.|+..| .++++++.+ ..+++...+...+... .+.+.+....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~-------------------~~~~~~l~~~~~~~~~~~g~~~~~~~~~ 61 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD-------------------LEKAEEAAAKALEELGHGGSDIKVTGAD 61 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC-------------------HHHHHHHHHHHHhhccccCCCceEEEeC
Confidence 699997 8999999999999999 577776542 1233333332211111 1111111111
Q ss_pred cchhhhcCCceEEEecCCHHHHHHHHHH
Q 001356 187 LTKEKLSDFQAVVFTDISLEKAVEFDDY 214 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~~~~~~~~~ln~~ 214 (1093)
..+.+...|+||+|.-+......+.++
T Consensus 62 -~~ea~~~aDvVilavp~~~~~~~l~~l 88 (219)
T TIGR01915 62 -NAEAAKRADVVILAVPWDHVLKTLESL 88 (219)
T ss_pred -hHHHHhcCCEEEEECCHHHHHHHHHHH
Confidence 235677899999998765544444444
No 263
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=87.23 E-value=1.2 Score=50.70 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=28.2
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCCc
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
+|.+||+|-+|..++++|...|. .|+++|.+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~ 33 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQ 33 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 69999999999999999999996 688888643
No 264
>PRK09242 tropinone reductase; Provisional
Probab=87.04 E-value=1.9 Score=47.28 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=47.3
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCC
Q 001356 502 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 580 (1093)
Q Consensus 502 ~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~ 580 (1093)
.+.+++++|+|+ |+||.++++.|+..|. ++++++.+ ..+.+.+.+.+...+|+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~------~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~ 60 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA------DVLIVARD-------------------ADALAQARDELAEEFPER 60 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeCC-------------------HHHHHHHHHHHHhhCCCC
Confidence 356789999995 8999999999999997 78888732 123344556666666777
Q ss_pred EEEEEecccCc
Q 001356 581 NTEALQIRANP 591 (1093)
Q Consensus 581 ~i~~~~~~v~~ 591 (1093)
++..+..++..
T Consensus 61 ~~~~~~~Dl~~ 71 (257)
T PRK09242 61 EVHGLAADVSD 71 (257)
T ss_pred eEEEEECCCCC
Confidence 77777666653
No 265
>PLN02427 UDP-apiose/xylose synthase
Probab=86.94 E-value=3 Score=49.04 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=28.5
Q ss_pred HhhcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeC
Q 001356 105 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 105 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
+++..+|||.|+ |-+|+.+++.|+..|--+|+.+|.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 556678999996 669999999999985346777764
No 266
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=86.94 E-value=3.4 Score=49.48 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=32.9
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCc
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
.+...+|+|+|+|.+|..+|+.|...|+ +++++|.+.
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 3578999999999999999999999999 799988644
No 267
>PRK07340 ornithine cyclodeaminase; Validated
Probab=86.85 E-value=1.9 Score=49.45 Aligned_cols=75 Identities=13% Similarity=0.053 Sum_probs=55.8
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHH-hCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 106 LFASNILISGMQGLGAEIAKNLIL-AGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvl-aGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
....+|+|+|+|+.|...++.+.. .|+.++.++|.+ ..|++..++++++.+. .+. .
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~--~ 179 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE--P 179 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE--E
Confidence 356899999999999999999964 688899998752 3478888888876532 232 1
Q ss_pred cccchhhhcCCceEEEecCC
Q 001356 185 TELTKEKLSDFQAVVFTDIS 204 (1093)
Q Consensus 185 ~~l~~~~l~~~dvVV~~~~~ 204 (1093)
.++ ++.+.++|+||.|+.+
T Consensus 180 ~~~-~~av~~aDiVitaT~s 198 (304)
T PRK07340 180 LDG-EAIPEAVDLVVTATTS 198 (304)
T ss_pred CCH-HHHhhcCCEEEEccCC
Confidence 222 3467899999998864
No 268
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=86.81 E-value=3 Score=48.00 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=27.9
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEe
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHD 139 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD 139 (1093)
|++++|.|||+|..|..+|++|..+|+. +.+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence 4678999999999999999999999983 44433
No 269
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.81 E-value=2.8 Score=52.60 Aligned_cols=86 Identities=16% Similarity=0.292 Sum_probs=61.8
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001356 108 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 187 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l 187 (1093)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|.- +++ .+++.. ..++..+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~g----~~v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVN----LMRKYG----YKVYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhCC----CeEEEeeC
Confidence 5699999999999999999999998 6888887542 222 333322 22233333
Q ss_pred c-h-----hhhcCCceEEEecCCHHHHHHHHHHHHhcCCC
Q 001356 188 T-K-----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQPP 221 (1093)
Q Consensus 188 ~-~-----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ 221 (1093)
+ + .-++++++||.+.++.+....+-..+|++++.
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~ 491 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPH 491 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCC
Confidence 2 2 24667899999999888888888899998743
No 270
>PRK08618 ornithine cyclodeaminase; Validated
Probab=86.78 E-value=2 Score=49.64 Aligned_cols=141 Identities=14% Similarity=0.095 Sum_probs=78.8
Q ss_pred CccCchhhhhccchhHHHHHhhccC------cccc-c-ceeeccCCCCCCCCCCCCCCCCCccCcchhhhhc-----cCH
Q 001356 431 AVLNPMAAMFGGIVGQEVVKACSGK------FHPL-L-QFFYFDSVESLPSEPLDPRDLQPLNSRYDAQISV-----FGS 497 (1093)
Q Consensus 431 ~el~PvaA~iGGiaAQEVIKaiTgk------f~PI-~-q~~~fD~~e~lp~~~~~~~~~~~~~~Rydrqi~l-----~G~ 497 (1093)
+.+.-|.+.++|.- --.+|.++.- --|- + ..++||...+.|-.-++...+ -.+|. .+.
T Consensus 49 ~~~~~mp~~~~~~~-~~g~K~~~~~p~n~~~glp~~~g~i~l~d~~tG~p~a~~d~~~l--------T~~RTaa~sala~ 119 (325)
T PRK08618 49 NTSLIMPGYAEGLE-ALGLKIVSVVPENKKKGKPTIPGTVILSDFETGEVLAILDGTYL--------TQIRTGALSGVAT 119 (325)
T ss_pred CcEEEeeeecCCCC-eEEEEEEeecCCCcccCCCcceEEEEEEeCCCCceEEEEccchh--------hhhhHHHHHHHHH
Confidence 44555666665421 1247876542 2232 1 366688776665432222111 11111 112
Q ss_pred HHHHHHhcCcEEEEccCcchHHHHHHHH-HcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHh
Q 001356 498 KLQKKLEEAKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALI 576 (1093)
Q Consensus 498 ~~q~~L~~~~VlivG~GgiG~e~lknLa-~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~ 576 (1093)
....+-...+++|||+|+.|-..+..++ ..|+ .++.|+|.+ ..|++.+++.++..
T Consensus 120 ~~la~~~~~~v~iiGaG~~a~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~~~~~~~~ 175 (325)
T PRK08618 120 KYLAREDAKTLCLIGTGGQAKGQLEAVLAVRDI-----ERVRVYSRT-------------------FEKAYAFAQEIQSK 175 (325)
T ss_pred HHhcCCCCcEEEEECCcHHHHHHHHHHHhcCCc-----cEEEEECCC-------------------HHHHHHHHHHHHHh
Confidence 2222334678999999999999988775 4677 889988633 34666666666543
Q ss_pred CCCCEEEEEecccCccccccchhhhhccCCEEEEccCCH
Q 001356 577 NPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDNV 615 (1093)
Q Consensus 577 np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~ 615 (1093)
. .+++..+.. . .+.+.+.|+||+|+-+.
T Consensus 176 ~-~~~~~~~~~-----~-----~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 176 F-NTEIYVVNS-----A-----DEAIEEADIIVTVTNAK 203 (325)
T ss_pred c-CCcEEEeCC-----H-----HHHHhcCCEEEEccCCC
Confidence 3 233333321 1 23457899999998654
No 271
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.75 E-value=1 Score=50.14 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=26.7
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEec
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
.+|.|||+|.+|..++..|...|. ....++++|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~---~~~~v~v~~ 35 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGV---PAKDIIVSD 35 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCC---CcceEEEEc
Confidence 579999999999999999999884 113567776
No 272
>PLN02780 ketoreductase/ oxidoreductase
Probab=86.71 E-value=2.2 Score=49.09 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=43.7
Q ss_pred cCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEE
Q 001356 505 EAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 583 (1093)
Q Consensus 505 ~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~ 583 (1093)
++.++|.|+ ||||.++++.|+..|. ++++++.+ ..|.+.+++.++..++..++.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~------~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~ 107 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL------NLVLVARN-------------------PDKLKDVSDSIQSKYSKTQIK 107 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC------CEEEEECC-------------------HHHHHHHHHHHHHHCCCcEEE
Confidence 567999996 8999999999999997 78888632 124455666676666666666
Q ss_pred EEecccC
Q 001356 584 ALQIRAN 590 (1093)
Q Consensus 584 ~~~~~v~ 590 (1093)
.+..++.
T Consensus 108 ~~~~Dl~ 114 (320)
T PLN02780 108 TVVVDFS 114 (320)
T ss_pred EEEEECC
Confidence 5554443
No 273
>PLN02928 oxidoreductase family protein
Probab=86.57 E-value=0.94 Score=52.86 Aligned_cols=35 Identities=43% Similarity=0.610 Sum_probs=31.6
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.|.+++|.|||.|.||.++++.|..+|+ +++.+|.
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~------~V~~~dr 190 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV------KLLATRR 190 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC------EEEEECC
Confidence 5889999999999999999999998887 8888874
No 274
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=86.57 E-value=0.61 Score=50.07 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=32.2
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
.|++++|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~------~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA------KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEEcCC
Confidence 4678899999999999999999999997 88888854
No 275
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.55 E-value=1.1 Score=51.36 Aligned_cols=34 Identities=24% Similarity=0.160 Sum_probs=29.5
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCc
Q 001356 108 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
..+|+|+|+|++|+-+|..|..+| ..++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 468999999999999999999999 5788887654
No 276
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=86.55 E-value=3.3 Score=47.01 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=29.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCc
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
++|.|||+|-+|+.+|.+|+.+|. .++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999995 788998643
No 277
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=86.55 E-value=2.2 Score=49.37 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=30.3
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEec
Q 001356 501 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 501 ~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
..|++++|.|||+|.+|..++++|...|+ ++++.+
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~------~Vvv~~ 47 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV------DVVVGL 47 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCC------EEEEEE
Confidence 46788999999999999999999999998 566554
No 278
>PRK08251 short chain dehydrogenase; Provisional
Probab=86.49 E-value=2.3 Score=46.27 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=44.4
Q ss_pred cCcEEEEc-cCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEE
Q 001356 505 EAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 583 (1093)
Q Consensus 505 ~~~VlivG-~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~ 583 (1093)
+++++|.| .||||.++++.|+..|. ++++++.+. .+...+...+...+|..++.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~------~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~ 56 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR------DLALCARRT-------------------DRLEELKAELLARYPGIKVA 56 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC------EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEE
Confidence 46799998 69999999999999986 788776431 12334455556667777777
Q ss_pred EEecccCc
Q 001356 584 ALQIRANP 591 (1093)
Q Consensus 584 ~~~~~v~~ 591 (1093)
.+..++..
T Consensus 57 ~~~~D~~~ 64 (248)
T PRK08251 57 VAALDVND 64 (248)
T ss_pred EEEcCCCC
Confidence 77766654
No 279
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=86.47 E-value=2.8 Score=48.55 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=25.7
Q ss_pred CcEEEEcc-CcchHHHHHHHHHc-ccccCCCcceEEecC
Q 001356 506 AKVFVVGS-GALGCEFLKNLALM-GVSCGNQGKLTITDD 542 (1093)
Q Consensus 506 ~~VlivG~-GgiG~e~lknLa~~-Gv~~~~~g~i~liD~ 542 (1093)
++|+|.|+ |-||+.+++.|... |. +++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~------~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDW------EVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCC------eEEEEeC
Confidence 47999996 99999999999876 45 7787764
No 280
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=86.37 E-value=1.1 Score=54.21 Aligned_cols=116 Identities=13% Similarity=0.139 Sum_probs=67.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccch--HHHHHHHHHHHh-CCCcEEEEee-
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKN--RALASIQKLQEL-NNAVAISALT- 184 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~--Ka~a~~~~L~eL-Np~V~V~~~~- 184 (1093)
++|.|||+|..|..+|.||...|. +|+++|.+.-....+... ...-|.+ .+....+.++.+ .|.+-+-...
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~----~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKK----AKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh----hhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999998 799998754332222110 0000100 111222333333 3554443322
Q ss_pred cccch-------hhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEeeeecc
Q 001356 185 TELTK-------EKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRG 231 (1093)
Q Consensus 185 ~~l~~-------~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~~~~~G 231 (1093)
....+ ..+..=|+||++.- ......+..+.+.++| +.|+.+.+.|
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~G--i~fldapVSG 129 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKG--ILYLGMGVSG 129 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CeEEcCCCCC
Confidence 21111 12344578887664 4555556667888888 8888887776
No 281
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=86.34 E-value=1.8 Score=51.86 Aligned_cols=109 Identities=18% Similarity=0.086 Sum_probs=74.3
Q ss_pred eEEEEcCChhHH-HHHHHHHH----hCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 110 NILISGMQGLGA-EIAKNLIL----AGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 110 ~VlIiG~gglGs-eiaKnLvl----aGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
+|.|||+|+.-+ ++.+.|+. .++++|+|+|-|. ...|.. =...+.+.+.+.++.++|+..+
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 799999999755 67777775 5779999999763 111111 1123445566777777877655
Q ss_pred cccchhhhcCCceEEEecC--CHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEe
Q 001356 185 TELTKEKLSDFQAVVFTDI--SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFC 238 (1093)
Q Consensus 185 ~~l~~~~l~~~dvVV~~~~--~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~ 238 (1093)
+ -++-+.+.|+||.+.. ..+.+..-.++..++| ++-..+.|..|..+.
T Consensus 68 d--~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~G----i~gqET~G~GG~~~a 117 (419)
T cd05296 68 D--RREALEGADFVFTQIRVGGLEARALDERIPLKHG----VIGQETTGAGGFAKA 117 (419)
T ss_pred C--HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcC----CccccCCCcchHHHh
Confidence 4 2457889999998864 4556666667888888 345788888886553
No 282
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=86.31 E-value=1.5 Score=51.56 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=31.9
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
+..++|+|+|+|++|..+++.|...|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 577889999999999999999999999 69999863
No 283
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=86.30 E-value=0.67 Score=46.93 Aligned_cols=35 Identities=29% Similarity=0.490 Sum_probs=30.6
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
+.+++|+|+|+|++|..+++.|+..|. .+++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~-----~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGA-----AKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-----CEEEEEcC
Confidence 457899999999999999999999885 68888874
No 284
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=86.29 E-value=2.6 Score=52.12 Aligned_cols=83 Identities=16% Similarity=0.297 Sum_probs=50.2
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhC----
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALIN---- 577 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~n---- 577 (1093)
-.++.|+|.|+ |+||..+++.|+..|. ++++++.+. .|...+.+.+.++.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~------~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~ 132 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF------RVRAGVRSA-------------------QRAESLVQSVKQMKLDVE 132 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC------eEEEEeCCH-------------------HHHHHHHHHhhhhccccc
Confidence 34567999995 9999999999999997 677665321 12222222222211
Q ss_pred ---CCCEEEEEecccCccccccchhhhhccCCEEEEccC
Q 001356 578 ---PHLNTEALQIRANPETENVFNDTFWENLNVVVNALD 613 (1093)
Q Consensus 578 ---p~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alD 613 (1093)
+..+++.+..++.... .+ ...+.++|+||++..
T Consensus 133 Ga~~~~~v~iV~gDLtD~e-sI--~~aLggiDiVVn~AG 168 (576)
T PLN03209 133 GTQPVEKLEIVECDLEKPD-QI--GPALGNASVVICCIG 168 (576)
T ss_pred cccccCceEEEEecCCCHH-HH--HHHhcCCCEEEEccc
Confidence 1224556666665322 12 235678999998864
No 285
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.26 E-value=2.8 Score=50.67 Aligned_cols=125 Identities=17% Similarity=0.105 Sum_probs=70.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecccc
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT 188 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l~ 188 (1093)
++|+|+|+|+.|..+|+.|...|. ++++.|..... +...+...|.++ .+.+..- ....
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~------------------~~~~~~~~l~~~--gi~~~~g-~~~~ 58 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSP------------------ELLERQQELEQE--GITVKLG-KPLE 58 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCch------------------hhHHHHHHHHHc--CCEEEEC-Cccc
Confidence 479999999999999999999997 78888854321 122223345544 3444321 1111
Q ss_pred h----hhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeecCCceEEecCCCCCCccceeccc
Q 001356 189 K----EKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIASI 262 (1093)
Q Consensus 189 ~----~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~i~~I 262 (1093)
. ..+.++|+||.+.. +.. ..+-..+++.+ +|++.-...- ...... .+-..|.=++|...++.++..|
T Consensus 59 ~~~~~~~~~~~d~vv~s~gi~~~--~~~~~~a~~~~--i~v~~~~~~~--~~~~~~-~~~I~VTGT~GKTTTt~ml~~i 130 (459)
T PRK02705 59 LESFQPWLDQPDLVVVSPGIPWD--HPTLVELRERG--IEVIGEIELA--WRALKH-IPWVGITGTNGKTTVTALLAHI 130 (459)
T ss_pred hhhhhHHhhcCCEEEECCCCCCC--CHHHHHHHHcC--CcEEEhHHHH--HHhhcC-CCEEEEeCCCchHHHHHHHHHH
Confidence 1 25678999988653 222 22344567888 8877532211 111111 1234444456665555544443
No 286
>PRK08618 ornithine cyclodeaminase; Validated
Probab=86.19 E-value=2.4 Score=49.01 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=56.1
Q ss_pred hcCeEEEEcCChhHHHHHHHHH-HhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 107 FASNILISGMQGLGAEIAKNLI-LAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 107 ~~s~VlIiG~gglGseiaKnLv-laGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
...+|+|+|+|+.|...+..+. ..|+++|+++|.+ ..|++..++++++..+ +++.....
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~~-~~~~~~~~ 185 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKFN-TEIYVVNS 185 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcC-CcEEEeCC
Confidence 4678999999999998888765 5799999998753 3477777777765432 34443321
Q ss_pred ccchhhhcCCceEEEecCCHH
Q 001356 186 ELTKEKLSDFQAVVFTDISLE 206 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~~~~ 206 (1093)
.++.+.+.|+||.|+.+..
T Consensus 186 --~~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 186 --ADEAIEEADIIVTVTNAKT 204 (325)
T ss_pred --HHHHHhcCCEEEEccCCCC
Confidence 2456789999999886543
No 287
>PRK09242 tropinone reductase; Provisional
Probab=86.16 E-value=3.5 Score=45.24 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=44.8
Q ss_pred HhhcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001356 105 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 183 (1093)
Q Consensus 105 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~ 183 (1093)
+|++++++|.|+ ||+|.++++.|+..|. ++++++.+ ..+.+...+.+...+|..++..+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence 466789999985 6899999999999997 57777642 12445556667766676666655
Q ss_pred eccc
Q 001356 184 TTEL 187 (1093)
Q Consensus 184 ~~~l 187 (1093)
..++
T Consensus 66 ~~Dl 69 (257)
T PRK09242 66 AADV 69 (257)
T ss_pred ECCC
Confidence 4444
No 288
>PRK10537 voltage-gated potassium channel; Provisional
Probab=86.15 E-value=2.1 Score=50.70 Aligned_cols=88 Identities=13% Similarity=0.026 Sum_probs=56.8
Q ss_pred HHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEE
Q 001356 103 MRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISA 182 (1093)
Q Consensus 103 q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~ 182 (1093)
+...++.||+|+|.|.+|.++++.|...|. .++++|.+.++. ... ..+. +
T Consensus 235 ~~~~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~------------------------~~~---~g~~--v 284 (393)
T PRK10537 235 SHMHRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEH------------------------RLP---DDAD--L 284 (393)
T ss_pred hhcccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhh------------------------hcc---CCCc--E
Confidence 334457899999999999999999998886 677887652210 000 1111 2
Q ss_pred eecccc------hhhhcCCceEEEecCCHHHHHHHHHHHHhcCC
Q 001356 183 LTTELT------KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQP 220 (1093)
Q Consensus 183 ~~~~l~------~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~ 220 (1093)
..++.+ ...+++.+.||.+.++.+....+-..+|+.++
T Consensus 285 I~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p 328 (393)
T PRK10537 285 IPGDSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSS 328 (393)
T ss_pred EEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCC
Confidence 222222 23456778888877766666666677888774
No 289
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.10 E-value=3.2 Score=46.97 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=27.6
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeC
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
+|+|+|+|.+|+.+|..|..+|. .++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVAR 31 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence 69999999999999999999994 7899885
No 290
>PRK07680 late competence protein ComER; Validated
Probab=86.09 E-value=4.6 Score=45.34 Aligned_cols=78 Identities=14% Similarity=0.235 Sum_probs=48.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC---ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 110 NILISGMQGLGAEIAKNLILAGV---KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGV---g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
+|.|||+|.+|..++..|...|. ..++++|.+. .++ +.+.+..+.+.+. . +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~----~~~~~~~~g~~~~--~-~ 55 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKA----YHIKERYPGIHVA--K-T 55 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHH----HHHHHHcCCeEEE--C-C
Confidence 59999999999999999999984 4567665421 122 2233333333321 1 1
Q ss_pred cchhhhcCCceEEEecCCHHHHHHHHHH
Q 001356 187 LTKEKLSDFQAVVFTDISLEKAVEFDDY 214 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~~~~~~~~~ln~~ 214 (1093)
..+.+.+.|+||+|..+......+.++
T Consensus 56 -~~~~~~~aDiVilav~p~~~~~vl~~l 82 (273)
T PRK07680 56 -IEEVISQSDLIFICVKPLDIYPLLQKL 82 (273)
T ss_pred -HHHHHHhCCEEEEecCHHHHHHHHHHH
Confidence 224567899999998655444444443
No 291
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=86.08 E-value=2.2 Score=46.25 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=30.0
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 503 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 503 L~~~~VlivG-~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
+++++|+|.| .|++|.++++.|+..|. ++++++.+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~------~V~~~~r~ 39 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA------EVIVVDIC 39 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC------EEEEEeCC
Confidence 4677899999 59999999999999997 78888754
No 292
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.95 E-value=3.5 Score=46.72 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=29.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCc
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
.+|.|||+|.+|+.+|..|+..|. .++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999998 799998644
No 293
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=85.95 E-value=1.4 Score=53.56 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=66.6
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccc--hHHHHHHHHHHHh-CCCcEEEEeec-
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGK--NRALASIQKLQEL-NNAVAISALTT- 185 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk--~Ka~a~~~~L~eL-Np~V~V~~~~~- 185 (1093)
.|.|||+|..|..+|.||+..|. +++++|.+.-....+...+. .|+ .-+....+..+.+ .|++-+...+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~-----~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~ 74 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHA-----KGKKIVGAYSIEEFVQSLERPRKIMLMVKAG 74 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhcc-----CCCCceecCCHHHHHhhcCCCCEEEEECCCc
Confidence 48899999999999999999997 78999875543332221100 010 0111122223233 35554444433
Q ss_pred ccch-------hhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEeeeecc
Q 001356 186 ELTK-------EKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRG 231 (1093)
Q Consensus 186 ~l~~-------~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~~~~~G 231 (1093)
...+ ..+..=++||++.- ......+..+.+.+++ +.||.+.+.|
T Consensus 75 ~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~g--i~fvdapVsG 126 (467)
T TIGR00873 75 APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKG--ILFVGSGVSG 126 (467)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcC--CEEEcCCCCC
Confidence 1111 12334478888764 4455455566788888 8888887776
No 294
>PLN02602 lactate dehydrogenase
Probab=85.94 E-value=1.9 Score=50.35 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=29.9
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.||.|||+|.+|+.++-.|+..|++ ++|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~----~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLA----DELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCC----CEEEEEeC
Confidence 5999999999999999999999984 68999983
No 295
>PRK06223 malate dehydrogenase; Reviewed
Probab=85.83 E-value=4.1 Score=46.55 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=29.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeC
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
.+|.|||+|.+|..+|..|+..|.+.+.|+|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998669999996
No 296
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=85.82 E-value=0.67 Score=48.65 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=34.5
Q ss_pred HHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcc
Q 001356 101 ETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVV 143 (1093)
Q Consensus 101 ~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V 143 (1093)
.....|..++|.|+|+|.+|.++|+-|...|. +|..+|...-
T Consensus 29 ~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~ 70 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPK 70 (178)
T ss_dssp TTBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCH
T ss_pred CCccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCC
Confidence 33457899999999999999999999999999 8888887443
No 297
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.81 E-value=3.9 Score=45.57 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=47.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCC--ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 109 SNILISGMQGLGAEIAKNLILAGV--KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGV--g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
.+|.|||+|.+|..++..|...|. ..+.++|.+. .+++ ++.+.. .+.+ .. .
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~----~~~~~~-g~~~--~~-~ 55 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRA----ALAEEY-GVRA--AT-D 55 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHH----HHHHhc-CCee--cC-C
Confidence 479999999999999999999984 3566665311 1222 222211 1222 11 1
Q ss_pred cchhhhcCCceEEEecCCHHHHHHHHHH
Q 001356 187 LTKEKLSDFQAVVFTDISLEKAVEFDDY 214 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~~~~~~~~~ln~~ 214 (1093)
..+.+.+.|+||.|..+......+.++
T Consensus 56 -~~~~~~~advVil~v~~~~~~~v~~~l 82 (267)
T PRK11880 56 -NQEAAQEADVVVLAVKPQVMEEVLSEL 82 (267)
T ss_pred -hHHHHhcCCEEEEEcCHHHHHHHHHHH
Confidence 224567899999998665544444443
No 298
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.74 E-value=4.6 Score=45.50 Aligned_cols=82 Identities=20% Similarity=0.209 Sum_probs=49.8
Q ss_pred hcCeEEEEcCChhHHHHHHHHHHhCC---ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001356 107 FASNILISGMQGLGAEIAKNLILAGV---KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 183 (1093)
Q Consensus 107 ~~s~VlIiG~gglGseiaKnLvlaGV---g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~ 183 (1093)
...+|.+||+|.+|..++++|...|+ ..++++|... ..|++ .+.+.. .+++ .
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~------------------~~~~~----~l~~~~-g~~~--~ 56 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN------------------ETRLQ----ELHQKY-GVKG--T 56 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC------------------HHHHH----HHHHhc-CceE--e
Confidence 34589999999999999999999983 3344433200 01222 222221 2322 2
Q ss_pred ecccchhhhcCCceEEEecCCHHHHHHHHHHH
Q 001356 184 TTELTKEKLSDFQAVVFTDISLEKAVEFDDYC 215 (1093)
Q Consensus 184 ~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c 215 (1093)
. + ..+...+.|+||+|..+......+..+.
T Consensus 57 ~-~-~~e~~~~aDvVilav~p~~~~~vl~~l~ 86 (279)
T PRK07679 57 H-N-KKELLTDANILFLAMKPKDVAEALIPFK 86 (279)
T ss_pred C-C-HHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence 1 1 2245678999999998776666565554
No 299
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=85.72 E-value=1.8 Score=51.87 Aligned_cols=92 Identities=20% Similarity=0.255 Sum_probs=60.3
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
+.+.+|+|+|+|..|..+++.|...| ..+++.|...-. .+... ...+-+.+++. ..
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~-~~~~~--------------------~~~~~~~i~~~--~g 60 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP-EGLAA--------------------QPLLLEGIEVE--LG 60 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc-cchhh--------------------hhhhccCceee--cC
Confidence 44889999999999999999999999 589999975543 22111 11122333433 33
Q ss_pred ccchhhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceE
Q 001356 186 ELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFI 225 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I 225 (1093)
....+.+..+|+||..-. ++... +-+.+++.| +|++
T Consensus 61 ~~~~~~~~~~d~vV~SPGi~~~~p--~v~~A~~~g--i~i~ 97 (448)
T COG0771 61 SHDDEDLAEFDLVVKSPGIPPTHP--LVEAAKAAG--IEII 97 (448)
T ss_pred ccchhccccCCEEEECCCCCCCCH--HHHHHHHcC--CcEE
Confidence 333367889999998754 33222 445667777 6755
No 300
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.48 E-value=2.8 Score=50.50 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=59.9
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
+..++|+|+|.|+.|..+|+.|...|. .+++.|..... . ...+|.+....+ ..+..
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~~~------------------~---~~~~l~~~~~gi--~~~~g 58 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAELKP------------------E---RVAQIGKMFDGL--VFYTG 58 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCc------------------h---hHHHHhhccCCc--EEEeC
Confidence 456799999999999999999999997 68888853321 0 012344322233 33334
Q ss_pred ccchhhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEe
Q 001356 186 ELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIK 226 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~ 226 (1093)
...+..+.++|+||.+.. +... .+-..+++++ +|++.
T Consensus 59 ~~~~~~~~~~d~vv~spgi~~~~--p~~~~a~~~~--i~v~~ 96 (445)
T PRK04308 59 RLKDALDNGFDILALSPGISERQ--PDIEAFKQNG--GRVLG 96 (445)
T ss_pred CCCHHHHhCCCEEEECCCCCCCC--HHHHHHHHcC--CcEEE
Confidence 434455678999998764 2221 2344567888 88874
No 301
>PRK05854 short chain dehydrogenase; Provisional
Probab=85.42 E-value=3.5 Score=47.12 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=41.5
Q ss_pred HhhcCeEEEEc-CChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001356 105 RLFASNILISG-MQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 183 (1093)
Q Consensus 105 kL~~s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~ 183 (1093)
.|+.++++|.| .+|+|.++|+.|+..|. +|.+++.+ ..|++.+.+.|.+.++..++..+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~~~ 70 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN-------------------RAKGEAAVAAIRTAVPDAKLSLR 70 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhCCCCceEEE
Confidence 35677899988 56799999999999996 67666531 23566666777776665554443
No 302
>PLN00016 RNA-binding protein; Provisional
Probab=85.42 E-value=3.9 Score=48.09 Aligned_cols=114 Identities=20% Similarity=0.323 Sum_probs=67.8
Q ss_pred HHHhhcCeEEEE----cC-ChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCC
Q 001356 103 MRRLFASNILIS----GM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNA 177 (1093)
Q Consensus 103 q~kL~~s~VlIi----G~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~ 177 (1093)
-......+|+|+ |+ |-+|..+++.|+..|. .|++++...-....+.. . . ...+.++...
T Consensus 47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~----------~--~---~~~~~~l~~~ 110 (378)
T PLN00016 47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKK----------E--P---FSRFSELSSA 110 (378)
T ss_pred hcccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhcc----------C--c---hhhhhHhhhc
Confidence 344556789999 86 5599999999999994 78877754321110000 0 0 0111122111
Q ss_pred cEEEEeecccch--hhh--cCCceEEEecC-CHHHHHHHHHHHHhcCCCc-ceEeeeecceeEE
Q 001356 178 VAISALTTELTK--EKL--SDFQAVVFTDI-SLEKAVEFDDYCHNHQPPI-AFIKSEVRGLFGN 235 (1093)
Q Consensus 178 V~V~~~~~~l~~--~~l--~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~i-p~I~~~~~G~~G~ 235 (1093)
.++....++.+ +.+ .++|+||.+.. .......+-++|++.+ + .||..++.|.+|.
T Consensus 111 -~v~~v~~D~~d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~g--vkr~V~~SS~~vyg~ 171 (378)
T PLN00016 111 -GVKTVWGDPADVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPG--LKQFLFCSSAGVYKK 171 (378)
T ss_pred -CceEEEecHHHHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcC--CCEEEEEccHhhcCC
Confidence 13333333332 233 36899998754 4555667788999888 5 6888888877653
No 303
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=85.39 E-value=4.2 Score=41.75 Aligned_cols=82 Identities=23% Similarity=0.326 Sum_probs=49.9
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHH--hC----CCcEEEE-
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQE--LN----NAVAISA- 182 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~e--LN----p~V~V~~- 182 (1093)
+|.|+|+|..|+.+|.-|+..| .+++|+..+.-. .+.|++ .| |.+++..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~-----------------------~~~i~~~~~n~~~~~~~~l~~~ 56 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQ-----------------------IEEINETRQNPKYLPGIKLPEN 56 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHH-----------------------HHHHHHHTSETTTSTTSBEETT
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHH-----------------------HHHHHHhCCCCCCCCCcccCcc
Confidence 6999999999999999999999 788888765411 112221 11 2222211
Q ss_pred --eecccchhhhcCCceEEEecCCHHHHHHHHHHHH
Q 001356 183 --LTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCH 216 (1093)
Q Consensus 183 --~~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~ 216 (1093)
.+.++ ++.+++.|+||.+..+...+..+.++..
T Consensus 57 i~~t~dl-~~a~~~ad~IiiavPs~~~~~~~~~l~~ 91 (157)
T PF01210_consen 57 IKATTDL-EEALEDADIIIIAVPSQAHREVLEQLAP 91 (157)
T ss_dssp EEEESSH-HHHHTT-SEEEE-S-GGGHHHHHHHHTT
T ss_pred cccccCH-HHHhCcccEEEecccHHHHHHHHHHHhh
Confidence 01122 2467899999999987666655555443
No 304
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.39 E-value=1.2 Score=51.57 Aligned_cols=74 Identities=8% Similarity=0.109 Sum_probs=48.5
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHhCCc------eEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhC----CC
Q 001356 109 SNILISGM-QGLGAEIAKNLILAGVK------SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN----NA 177 (1093)
Q Consensus 109 s~VlIiG~-gglGseiaKnLvlaGVg------~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLN----p~ 177 (1093)
.+|.|||+ |.+|+.+|-.|+..|+- +|.|+|-.. + +.|+++.+--|+... +.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~----~-------------~~~a~g~a~Dl~~~~~~~~~~ 65 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQ----A-------------LKALEGVAMELEDCAFPLLAE 65 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCC----c-------------ccccceeehhhhhccccccCc
Confidence 58999999 99999999999998874 699998521 1 112222233344333 23
Q ss_pred cEEEEeecccchhhhcCCceEEEecC
Q 001356 178 VAISALTTELTKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 178 V~V~~~~~~l~~~~l~~~dvVV~~~~ 203 (1093)
+.|. .. +.+-+++.|+||.|..
T Consensus 66 ~~i~--~~--~~~~~~daDivvitaG 87 (322)
T cd01338 66 IVIT--DD--PNVAFKDADWALLVGA 87 (322)
T ss_pred eEEe--cC--cHHHhCCCCEEEEeCC
Confidence 3332 22 3466889999998865
No 305
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.35 E-value=2.6 Score=48.39 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=28.9
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC-ceEEEEeC
Q 001356 110 NILISGMQGLGAEIAKNLILAGV-KSVTLHDE 140 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGV-g~itLvD~ 140 (1093)
+|.|||+|.+|+.+|-.|+..|+ .++.|+|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 69999999999999999999996 78999995
No 306
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=85.33 E-value=0.88 Score=46.76 Aligned_cols=102 Identities=23% Similarity=0.308 Sum_probs=58.6
Q ss_pred cEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCC--cccccccCccccchHHHHHHHHHHhCCCCEEEE
Q 001356 507 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLS--RQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 584 (1093)
Q Consensus 507 ~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLn--RQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~ 584 (1093)
||.|+|+|..|+.+|..|+..|. +++|...|.=....|+ |+-. ...|++++..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~------~V~l~~~~~~~~~~i~~~~~n~-------------------~~~~~~~l~~ 55 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH------EVTLWGRDEEQIEEINETRQNP-------------------KYLPGIKLPE 55 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE------EEEEETSCHHHHHHHHHHTSET-------------------TTSTTSBEET
T ss_pred CEEEECcCHHHHHHHHHHHHcCC------EEEEEeccHHHHHHHHHhCCCC-------------------CCCCCcccCc
Confidence 69999999999999999999996 8888887641111111 1100 0112222111
Q ss_pred EecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc--ccceEeccccCc
Q 001356 585 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF--QKPLLESGTLGA 640 (1093)
Q Consensus 585 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~--~~pli~sgt~G~ 640 (1093)
. -.+..+- .+.+++.|+||-|+-...-|..+.+..... +.+++ .-+-|+
T Consensus 56 ~-i~~t~dl-----~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii-~~~KG~ 106 (157)
T PF01210_consen 56 N-IKATTDL-----EEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIII-SATKGF 106 (157)
T ss_dssp T-EEEESSH-----HHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEE-ETS-SE
T ss_pred c-cccccCH-----HHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEE-EecCCc
Confidence 0 0111111 245788999999999998888888776543 44555 334444
No 307
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.30 E-value=6.8 Score=44.33 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=28.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
.+|.|||+|..|+.+|..|+..|. .++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999996 69999864
No 308
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.30 E-value=4.1 Score=46.62 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=29.3
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 108 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
..+|.|+|+|.+|+.+|++|...|. .|+++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4589999999999999999999995 78888864
No 309
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=85.28 E-value=0.7 Score=52.86 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=29.4
Q ss_pred cCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 505 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 505 ~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
..||+|+|+||+|+-++-.|++.|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~------~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL------PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC------CeEEEEec
Confidence 4689999999999999999999986 88998853
No 310
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=85.25 E-value=2.2 Score=42.45 Aligned_cols=81 Identities=25% Similarity=0.151 Sum_probs=44.9
Q ss_pred hcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 107 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 107 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
...+|.|||+|-+|..+++.|..+|. .|.-+- +|..+.++++..+-+...+..
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~----------------------srs~~sa~~a~~~~~~~~~~~---- 61 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH-EVVGVY----------------------SRSPASAERAAAFIGAGAILD---- 61 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS-EEEEES----------------------SCHH-HHHHHHC--TT---------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC-eEEEEE----------------------eCCcccccccccccccccccc----
Confidence 45689999999999999999999996 333221 123344556666666554432
Q ss_pred cchhhhcCCceEEEecCCHHHHHHHHHHH
Q 001356 187 LTKEKLSDFQAVVFTDISLEKAVEFDDYC 215 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~~~~~~~~~ln~~c 215 (1093)
..+.+..+|+|+++.-+........+++
T Consensus 62 -~~~~~~~aDlv~iavpDdaI~~va~~La 89 (127)
T PF10727_consen 62 -LEEILRDADLVFIAVPDDAIAEVAEQLA 89 (127)
T ss_dssp -TTGGGCC-SEEEE-S-CCHHHHHHHHHH
T ss_pred -cccccccCCEEEEEechHHHHHHHHHHH
Confidence 2356778999999875544433334443
No 311
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=85.24 E-value=2.3 Score=50.30 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=52.9
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHhCCce------EEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhC-CCc-E
Q 001356 109 SNILISGM-QGLGAEIAKNLILAGVKS------VTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN-NAV-A 179 (1093)
Q Consensus 109 s~VlIiG~-gglGseiaKnLvlaGVg~------itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLN-p~V-~ 179 (1093)
.+|.|||+ |.+|+.+|-.|+..|+-. ++|+|- |+.+.|++.-+--|+..- |.. .
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-----------------D~~~~~a~g~a~DL~d~a~~~~~~ 107 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-----------------ERSKEALEGVAMELEDSLYPLLRE 107 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-----------------CccchhhhHHHHHHHHhhhhhcCc
Confidence 58999999 999999999999999843 666654 334556666666666554 432 2
Q ss_pred EEEeecccchhhhcCCceEEEecC
Q 001356 180 ISALTTELTKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 180 V~~~~~~l~~~~l~~~dvVV~~~~ 203 (1093)
+.+... +.+-+++.|+||.+..
T Consensus 108 v~i~~~--~y~~~kdaDIVVitAG 129 (387)
T TIGR01757 108 VSIGID--PYEVFEDADWALLIGA 129 (387)
T ss_pred eEEecC--CHHHhCCCCEEEECCC
Confidence 332222 3467889999998765
No 312
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.20 E-value=4.1 Score=48.64 Aligned_cols=62 Identities=15% Similarity=0.285 Sum_probs=43.2
Q ss_pred cCCCCCCCCchhhhhhh-hhhhccCHHHHHH-----hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 76 MGLGNGNPSDIDEDLHS-RQLAVYGRETMRR-----LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 76 ~~~~~~~~~~~~~~~Ys-RQi~l~G~~~q~k-----L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
+.+.++......+++|- +|- +| ++..+ +...+|+|+|+|.+|..+++.+...|+ +++++|.+
T Consensus 167 ~~vnds~~K~~~dn~~g~g~s-~~--~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d 234 (413)
T cd00401 167 INVNDSVTKSKFDNLYGCRES-LI--DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD 234 (413)
T ss_pred EEecchhhcccccccchhchh-hH--HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 44444434455556663 443 23 33333 467899999999999999999999999 68888764
No 313
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=85.17 E-value=2.2 Score=48.76 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=48.6
Q ss_pred EEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCC---CEEEE
Q 001356 508 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPH---LNTEA 584 (1093)
Q Consensus 508 VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~---~~i~~ 584 (1093)
|.|||+|++|+.++-.|+..|+. .+|+++|.+ +.|+...+.-|....+. .++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~----~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~ 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLA----SELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCC----CEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE
Confidence 57999999999999999999983 579999842 23455555566655443 12211
Q ss_pred EecccCccccccchhhhhccCCEEEEccC
Q 001356 585 LQIRANPETENVFNDTFWENLNVVVNALD 613 (1093)
Q Consensus 585 ~~~~v~~~~~~~~~~~f~~~~DvVi~alD 613 (1093)
..+ .+-++++|+||.|..
T Consensus 58 -----~~~------~~~l~~aDiVIitag 75 (300)
T cd00300 58 -----GGD------YADAADADIVVITAG 75 (300)
T ss_pred -----CCC------HHHhCCCCEEEEcCC
Confidence 111 124688999998864
No 314
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=85.16 E-value=5.2 Score=49.51 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=59.3
Q ss_pred hcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhC-------CCc
Q 001356 107 FASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN-------NAV 178 (1093)
Q Consensus 107 ~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLN-------p~V 178 (1093)
....|+|.|+ |++|..+++.|+..|. +|++++.+. .++..+.+.+.++. +..
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~~ 138 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPVE 138 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhccccccccccC
Confidence 4567899985 7899999999999996 565554321 13333333333221 112
Q ss_pred EEEEeecccch-----hhhcCCceEEEecCCH---------------HHHHHHHHHHHhcCCCcceEeeeecc
Q 001356 179 AISALTTELTK-----EKLSDFQAVVFTDISL---------------EKAVEFDDYCHNHQPPIAFIKSEVRG 231 (1093)
Q Consensus 179 ~V~~~~~~l~~-----~~l~~~dvVV~~~~~~---------------~~~~~ln~~c~~~~~~ip~I~~~~~G 231 (1093)
++.++..++.+ ..+.+.|+||.+.... .....+-++|+..+. -.||..++.|
T Consensus 139 ~v~iV~gDLtD~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agV-gRIV~VSSig 210 (576)
T PLN03209 139 KLEIVECDLEKPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKV-NHFILVTSLG 210 (576)
T ss_pred ceEEEEecCCCHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCC-CEEEEEccch
Confidence 34555555532 2467889988775311 123345566666652 2466655554
No 315
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=85.16 E-value=5.1 Score=45.84 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=27.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
+|.|||+|.+|+.++.+|...|. .++++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 79999999999999999999997 58888864
No 316
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=85.14 E-value=4 Score=50.07 Aligned_cols=32 Identities=22% Similarity=0.501 Sum_probs=29.4
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
++|.|||+|.+|+.++.+|+..|. .+++.|.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~------~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI------DVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC------eEEEEeCC
Confidence 479999999999999999999998 89999864
No 317
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=85.11 E-value=5.5 Score=48.68 Aligned_cols=117 Identities=11% Similarity=0.104 Sum_probs=70.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccch---HHHHHHHHHHHh-CCCcEEEEee
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKN---RALASIQKLQEL-NNAVAISALT 184 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~---Ka~a~~~~L~eL-Np~V~V~~~~ 184 (1093)
++|.+||+|-.|..+|+||+..|. +++++|.+.-....+... ...-|.. -+....+..+.+ .|.+-+....
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 479999999999999999999997 788988643221111100 0000110 111222223222 3555555544
Q ss_pred ccc-ch-------hhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEeeeecce
Q 001356 185 TEL-TK-------EKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGL 232 (1093)
Q Consensus 185 ~~l-~~-------~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~~~~~G~ 232 (1093)
..- .+ ..+..=|+||++.- +++...++.+.+.++| +.||.+.+.|-
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~G--i~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG--LLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC--CeEEeCCCcCC
Confidence 321 11 12334478887765 5677778888999999 88888776663
No 318
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=85.06 E-value=0.55 Score=53.98 Aligned_cols=94 Identities=19% Similarity=0.193 Sum_probs=57.1
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCC
Q 001356 501 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 580 (1093)
Q Consensus 501 ~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~ 580 (1093)
..+++++|.|+|+|.||..+|+.|-..| ..+ ..++.++ ..++ .+. +.+..
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-------~~i-------~y~~r~~---------~~~~--~~~----~~~~~- 207 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-------CVI-------LYHSRTQ---------LPPE--EAY----EYYAE- 207 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-------cee-------eeecccC---------Cchh--hHH----Hhccc-
Confidence 4778999999999999999999998743 222 2222111 1111 111 11111
Q ss_pred EEEEEecccCccccccchhhhhccCCEEE-EccCCHHHHHHHhhccccccc---ceEecccc
Q 001356 581 NTEALQIRANPETENVFNDTFWENLNVVV-NALDNVNARLYIDQRCLYFQK---PLLESGTL 638 (1093)
Q Consensus 581 ~i~~~~~~v~~~~~~~~~~~f~~~~DvVi-~alDn~~aR~~i~~~c~~~~~---pli~sgt~ 638 (1093)
. +++ ++++.+.|+|+ +|-.+.+++..+|+.....-+ -+++.+-.
T Consensus 208 -------~-----~d~--~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG 255 (336)
T KOG0069|consen 208 -------F-----VDI--EELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARG 255 (336)
T ss_pred -------c-----cCH--HHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccc
Confidence 1 111 56889999665 888999999999985543322 35554443
No 319
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=85.03 E-value=2.7 Score=41.80 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=45.8
Q ss_pred hcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEE
Q 001356 504 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 583 (1093)
Q Consensus 504 ~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~ 583 (1093)
...||.|||+|-+|..+++.|...|. .|.-+ |.. +...++.+...-+...+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~------~v~~v---------------~sr-------s~~sa~~a~~~~~~~~~~ 60 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH------EVVGV---------------YSR-------SPASAERAAAFIGAGAIL 60 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS------EEEEE---------------SSC-------HH-HHHHHHC--TT----
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC------eEEEE---------------EeC-------Cccccccccccccccccc
Confidence 45699999999999999999999997 44432 111 122334444444433221
Q ss_pred EEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccc
Q 001356 584 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLY 627 (1093)
Q Consensus 584 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~ 627 (1093)
.. .+.....|+|+-|+-+-........++..
T Consensus 61 ~~-------------~~~~~~aDlv~iavpDdaI~~va~~La~~ 91 (127)
T PF10727_consen 61 DL-------------EEILRDADLVFIAVPDDAIAEVAEQLAQY 91 (127)
T ss_dssp -T-------------TGGGCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred cc-------------ccccccCCEEEEEechHHHHHHHHHHHHh
Confidence 11 23467899999888666666555555543
No 320
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=84.96 E-value=1.2 Score=50.69 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=28.4
Q ss_pred cEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 507 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 507 ~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
+|.+||+|.+|+.++++|+..|. ++++.|.+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~------~v~v~dr~ 32 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH------EVVGYDRN 32 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC------eEEEEECC
Confidence 79999999999999999999997 78888865
No 321
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=84.94 E-value=4.2 Score=45.39 Aligned_cols=74 Identities=9% Similarity=0.070 Sum_probs=47.9
Q ss_pred hcCeEEEEcCChhHHHHHHHHHHhCC---ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001356 107 FASNILISGMQGLGAEIAKNLILAGV---KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 183 (1093)
Q Consensus 107 ~~s~VlIiG~gglGseiaKnLvlaGV---g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~ 183 (1093)
++.+|.|||+|-+|+.+++.|...|+ .++.++|.+.-. .+ +...
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~--------------~~-------------------~~~~ 48 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN--------------TP-------------------FVYL 48 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc--------------CC-------------------eEEe
Confidence 45689999999999999999999884 236665542200 00 1111
Q ss_pred ecccchhhhcCCceEEEecCCHHHHHHHHHHH
Q 001356 184 TTELTKEKLSDFQAVVFTDISLEKAVEFDDYC 215 (1093)
Q Consensus 184 ~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c 215 (1093)
. + ..+.+.++|+||+|..+......+.++.
T Consensus 49 ~-~-~~~~~~~~D~Vilavkp~~~~~vl~~i~ 78 (260)
T PTZ00431 49 Q-S-NEELAKTCDIIVLAVKPDLAGKVLLEIK 78 (260)
T ss_pred C-C-hHHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence 1 1 2234678899999987766665555543
No 322
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=84.92 E-value=6.6 Score=44.77 Aligned_cols=31 Identities=35% Similarity=0.380 Sum_probs=28.2
Q ss_pred EEEEcCChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 111 ILISGMQGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 111 VlIiG~gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
|.|||+|.+|+.+|-.|++.|...++|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999987699999975
No 323
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.88 E-value=3.6 Score=46.38 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=27.4
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeC
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
+|.|||+|.+|..+++.|...|. +|+++|.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~ 31 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSR 31 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEEC
Confidence 69999999999999999999996 6888886
No 324
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.80 E-value=2.4 Score=50.93 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=59.3
Q ss_pred hcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEE
Q 001356 504 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 583 (1093)
Q Consensus 504 ~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~ 583 (1093)
...+|+|+|+|.+|..+++.|...|. .++++|.|.= + .+.+++..+++.
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~------~v~vid~~~~-------------------~----~~~~~~~~~~~~-- 278 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY------SVKLIERDPE-------------------R----AEELAEELPNTL-- 278 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC------eEEEEECCHH-------------------H----HHHHHHHCCCCe--
Confidence 46789999999999999999999887 8899985421 1 112222222332
Q ss_pred EEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccc
Q 001356 584 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQ 629 (1093)
Q Consensus 584 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~ 629 (1093)
.+..+... ...+.....+++|.||.++++...-..+...|..++
T Consensus 279 ~i~gd~~~--~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~ 322 (453)
T PRK09496 279 VLHGDGTD--QELLEEEGIDEADAFIALTNDDEANILSSLLAKRLG 322 (453)
T ss_pred EEECCCCC--HHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhC
Confidence 33333321 122323346789999999988776666655555543
No 325
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=84.80 E-value=2.8 Score=47.54 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeC
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
+|+|+|+|++|+.+|..|..+|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999985 6888764
No 326
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=84.78 E-value=0.91 Score=51.74 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=27.7
Q ss_pred cEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 507 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 507 ~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
+|.|||+|.+|+.++++|+..|. ++++.|.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~------~V~~~dr~ 32 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH------DCVGYDHD 32 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC------EEEEEECC
Confidence 69999999999999999999997 77777754
No 327
>PLN02206 UDP-glucuronate decarboxylase
Probab=84.72 E-value=2.6 Score=50.90 Aligned_cols=33 Identities=24% Similarity=0.503 Sum_probs=28.4
Q ss_pred hcCcEEEEc-cCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 504 EEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 504 ~~~~VlivG-~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
+++||||.| +|-||+.+++.|...|. +++++|.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~------~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD------SVIVVDN 151 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC------EEEEEeC
Confidence 457899999 59999999999999987 7777764
No 328
>PRK07063 short chain dehydrogenase; Provisional
Probab=84.62 E-value=3.5 Score=45.32 Aligned_cols=60 Identities=27% Similarity=0.346 Sum_probs=41.2
Q ss_pred HhhcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEe
Q 001356 105 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISAL 183 (1093)
Q Consensus 105 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~ 183 (1093)
+|.+++|+|.|. ||+|.++++.|+..|. ++.++|.+ ..+.+.+.+.+.+.++..++..+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 63 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD-------------------AALAERAAAAIARDVAGARVLAV 63 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence 467889999985 6899999999999997 47776631 23455556666654444444444
Q ss_pred e
Q 001356 184 T 184 (1093)
Q Consensus 184 ~ 184 (1093)
.
T Consensus 64 ~ 64 (260)
T PRK07063 64 P 64 (260)
T ss_pred E
Confidence 3
No 329
>PRK05867 short chain dehydrogenase; Provisional
Probab=84.54 E-value=1.8 Score=47.38 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=28.9
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEec
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
+++++++|.|+ ||||.++++.|+..|. ++++++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~------~V~~~~ 40 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA------QVAIAA 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEc
Confidence 56788999996 8999999999999997 787775
No 330
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=84.50 E-value=4.7 Score=40.88 Aligned_cols=60 Identities=27% Similarity=0.437 Sum_probs=42.2
Q ss_pred CeEEEEc-CChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001356 109 SNILISG-MQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 187 (1093)
Q Consensus 109 s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l 187 (1093)
+.|+|.| .+|+|.++++.|+..|-..+.++... .-..+++.+...+.+.+ .++.....++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D~ 61 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECDL 61 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--cccccccccc
Confidence 3688887 67899999999999999999998764 01235555566666444 5665555443
No 331
>PLN02240 UDP-glucose 4-epimerase
Probab=84.47 E-value=6.3 Score=45.43 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=28.5
Q ss_pred hhcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeC
Q 001356 106 LFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 106 L~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
|++++|+|.|. |.+|..+++.|+..|. +|+++|.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN 37 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 45679999986 7799999999999995 6888763
No 332
>PRK06223 malate dehydrogenase; Reviewed
Probab=84.45 E-value=2.5 Score=48.23 Aligned_cols=32 Identities=28% Similarity=0.531 Sum_probs=29.7
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.||.|||+|.+|..++..|+..|+ ++++++|-
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~-----~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKEL-----GDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-----eEEEEEEC
Confidence 589999999999999999999998 69999985
No 333
>PRK07576 short chain dehydrogenase; Provisional
Probab=84.37 E-value=1.9 Score=47.87 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=31.1
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 502 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 502 ~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
++.+++|+|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~------~V~~~~r~ 42 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGA------NVAVASRS 42 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeCC
Confidence 567889999996 8999999999999987 68888754
No 334
>PRK08291 ectoine utilization protein EutC; Validated
Probab=84.33 E-value=3.8 Score=47.49 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=53.9
Q ss_pred cCeEEEEcCChhHHHHHHHHHH-hCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 108 ASNILISGMQGLGAEIAKNLIL-AGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLvl-aGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
.++|+|+|+|+.|...+..|.. .|+.+++|++.+ ..|++..++++++.. .+++.... +
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~~-d 190 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVAR-D 190 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEeC-C
Confidence 4689999999999999999985 678999998642 337777777776433 24443332 1
Q ss_pred cchhhhcCCceEEEecCC
Q 001356 187 LTKEKLSDFQAVVFTDIS 204 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~~~ 204 (1093)
.++.+.++|+||.|+.+
T Consensus 191 -~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 191 -VHEAVAGADIIVTTTPS 207 (330)
T ss_pred -HHHHHccCCEEEEeeCC
Confidence 13567789999988754
No 335
>PRK07478 short chain dehydrogenase; Provisional
Probab=84.32 E-value=2 Score=47.07 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=28.9
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
+.+++++|.|+ ||||.++++.|+..|. ++++++.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~------~v~~~~r 38 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA------KVVVGAR 38 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEEeC
Confidence 45678999985 8999999999999997 6877763
No 336
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.26 E-value=1.2 Score=53.16 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=31.8
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.|.+++|.|||.|.||..+|+.+...|+ ++..+|.
T Consensus 148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm------~V~~~d~ 182 (409)
T PRK11790 148 EVRGKTLGIVGYGHIGTQLSVLAESLGM------RVYFYDI 182 (409)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC------EEEEECC
Confidence 5889999999999999999999998888 8888884
No 337
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=84.23 E-value=3 Score=42.05 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=47.7
Q ss_pred EEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhC-CCcEEEEe-ecccc
Q 001356 111 ILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN-NAVAISAL-TTELT 188 (1093)
Q Consensus 111 VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLN-p~V~V~~~-~~~l~ 188 (1093)
|+|+|+|++|+-+|-.|..+|. .+++++... +++...+.=-.+. +.-+-... .....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~--------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP--------------------RLEAIKEQGLTITGPDGDETVQPPIVIS 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH--------------------HHHHHHHHCEEEEETTEEEEEEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc--------------------cHHhhhheeEEEEecccceecccccccC
Confidence 7999999999999999999887 477776422 1222111100000 11000000 00111
Q ss_pred --hhhhcCCceEEEecCCHHHHHHHHHH
Q 001356 189 --KEKLSDFQAVVFTDISLEKAVEFDDY 214 (1093)
Q Consensus 189 --~~~l~~~dvVV~~~~~~~~~~~ln~~ 214 (1093)
......+|+||+|.-+......+..+
T Consensus 60 ~~~~~~~~~D~viv~vKa~~~~~~l~~l 87 (151)
T PF02558_consen 60 APSADAGPYDLVIVAVKAYQLEQALQSL 87 (151)
T ss_dssp SHGHHHSTESEEEE-SSGGGHHHHHHHH
T ss_pred cchhccCCCcEEEEEecccchHHHHHHH
Confidence 13567899999999887777666665
No 338
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=84.22 E-value=0.94 Score=47.77 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=28.7
Q ss_pred cEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccc
Q 001356 507 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE 546 (1093)
Q Consensus 507 ~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie 546 (1093)
+|.|||+|.+|.-++-.+++.|. +++++|.+.-.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~------~V~l~d~~~~~ 34 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY------EVTLYDRSPEA 34 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS------EEEEE-SSHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC------cEEEEECChHH
Confidence 68999999999999999999998 99999976443
No 339
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.18 E-value=3.2 Score=50.86 Aligned_cols=95 Identities=13% Similarity=0.101 Sum_probs=60.1
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
++.++|+|+|+|+.|..+|+.|...|. +++..|..... + ..+.|.+.-+.+++. ..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~~~-----------------~----~~~~L~~~~~~~~~~--~g 60 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTREAP-----------------P----NLAALRAELPDAEFV--GG 60 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCCCc-----------------h----hHHHHHhhcCCcEEE--eC
Confidence 456789999999999999999999997 68888853210 0 012344443334433 33
Q ss_pred ccchhhhcCCceEEEecC-CHHH--HHHHHHHHHhcCCCcceEe
Q 001356 186 ELTKEKLSDFQAVVFTDI-SLEK--AVEFDDYCHNHQPPIAFIK 226 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~-~~~~--~~~ln~~c~~~~~~ip~I~ 226 (1093)
...++.+.++|+||.+.. +... ....-..+++.+ +|++.
T Consensus 61 ~~~~~~~~~~d~vv~sp~I~~~~~~~~~~~~~a~~~~--i~v~~ 102 (498)
T PRK02006 61 PFDPALLDGVDLVALSPGLSPLEAALAPLVAAARERG--IPVWG 102 (498)
T ss_pred CCchhHhcCCCEEEECCCCCCcccccCHHHHHHHHCC--CcEEE
Confidence 344566778999998753 2210 112334557788 88883
No 340
>PLN02306 hydroxypyruvate reductase
Probab=84.09 E-value=1.2 Score=52.67 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=30.6
Q ss_pred HHhcCcEEEEccCcchHHHHHHHH-HcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa-~~Gv~~~~~g~i~liD~ 542 (1093)
.|.+++|.|||.|.||+++++.|. .+|+ ++..+|.
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~fGm------~V~~~d~ 197 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM------NLIYYDL 197 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCC------EEEEECC
Confidence 588999999999999999999985 6676 7888885
No 341
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.08 E-value=2.2 Score=51.30 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=72.1
Q ss_pred HHhhc-CeEEEEcCChhHHHHHHHHHHhCC-ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEE
Q 001356 104 RRLFA-SNILISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAIS 181 (1093)
Q Consensus 104 ~kL~~-s~VlIiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~ 181 (1093)
.|+.+ ++|+|+|+|+.|...+..|...|- -.+++.|.... . . ..++|++ .++
T Consensus 2 ~~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~----~-------------~----~~~~l~~---g~~-- 55 (438)
T PRK04663 2 DRWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRET----P-------------P----GQEQLPE---DVE-- 55 (438)
T ss_pred CcccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCC----c-------------h----hHHHhhc---CCE--
Confidence 35556 789999999999999999999865 47888875320 0 0 0123422 333
Q ss_pred EeecccchhhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeecCCceEEecCCCCCCccceec
Q 001356 182 ALTTELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIA 260 (1093)
Q Consensus 182 ~~~~~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~i~ 260 (1093)
......+++.+.++|+||.+.. +.. ...-..+++++ ||++.-. .+.+.+. . .+-..|.=++|...++.++.
T Consensus 56 ~~~g~~~~~~~~~~d~vV~SpgI~~~--~p~~~~a~~~g--i~i~~~~--el~~~~~-~-~~~I~VTGTnGKTTTt~ll~ 127 (438)
T PRK04663 56 LHSGGWNLEWLLEADLVVTNPGIALA--TPEIQQVLAAG--IPVVGDI--ELFAWAV-D-KPVIAITGSNGKSTVTDLTG 127 (438)
T ss_pred EEeCCCChHHhccCCEEEECCCCCCC--CHHHHHHHHCC--CcEEEHH--HHHHhhc-C-CCEEEEeCCCCHHHHHHHHH
Confidence 3333344566788999988754 222 12334567888 8887522 1222222 1 22334445566655555544
Q ss_pred cc
Q 001356 261 SI 262 (1093)
Q Consensus 261 ~I 262 (1093)
.+
T Consensus 128 ~i 129 (438)
T PRK04663 128 VM 129 (438)
T ss_pred HH
Confidence 43
No 342
>PRK09186 flagellin modification protein A; Provisional
Probab=84.04 E-value=2.6 Score=46.08 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=27.9
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEec
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
+.+++|+|.|+ |+||.++++.|+..|. ++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~------~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG------IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEe
Confidence 35688999996 8999999999999997 677765
No 343
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=84.04 E-value=2.1 Score=48.50 Aligned_cols=32 Identities=31% Similarity=0.651 Sum_probs=26.5
Q ss_pred EEEEcCCh-hHHHHHHHHHHhCCceEEEEeCCc
Q 001356 111 ILISGMQG-LGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 111 VlIiG~gg-lGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
|||-|+|| +|+|+++.|+..|+++|.++|.+.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E 33 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDE 33 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-H
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCCh
Confidence 68887555 999999999999999999999743
No 344
>PRK07062 short chain dehydrogenase; Provisional
Probab=83.96 E-value=5 Score=44.25 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=41.7
Q ss_pred hhcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 106 LFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 106 L~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
|+++.++|.|+ +|+|.++++.|+..|. ++.+++.+. .+.+.+.+.+.+..+..++..+.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDE-------------------ERLASAEARLREKFPGARLLAAR 65 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence 56788999986 5799999999999998 477776421 24445556666666655555443
Q ss_pred c
Q 001356 185 T 185 (1093)
Q Consensus 185 ~ 185 (1093)
.
T Consensus 66 ~ 66 (265)
T PRK07062 66 C 66 (265)
T ss_pred e
Confidence 3
No 345
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=83.93 E-value=3 Score=46.65 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=46.8
Q ss_pred EEEEcC-ChhHHHHHHHHHHhC--C-ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhC---CCcEEEEe
Q 001356 111 ILISGM-QGLGAEIAKNLILAG--V-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN---NAVAISAL 183 (1093)
Q Consensus 111 VlIiG~-gglGseiaKnLvlaG--V-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLN---p~V~V~~~ 183 (1093)
|.|||+ |.+|..++..|+..| . .+|+|+|.+. .|++..+..|+++. +..+|+..
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~i~~~ 61 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE-------------------EKLKGVAMDLQDAVEPLADIKVSIT 61 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc-------------------ccchHHHHHHHHhhhhccCcEEEEC
Confidence 579999 889999999999998 4 6899998533 12222333343333 23455542
Q ss_pred ecccchhhhcCCceEEEec
Q 001356 184 TTELTKEKLSDFQAVVFTD 202 (1093)
Q Consensus 184 ~~~l~~~~l~~~dvVV~~~ 202 (1093)
+ ++ .+.+.+.|+||.+.
T Consensus 62 ~-d~-~~~~~~aDiVv~t~ 78 (263)
T cd00650 62 D-DP-YEAFKDADVVIITA 78 (263)
T ss_pred C-ch-HHHhCCCCEEEECC
Confidence 2 21 35678999999965
No 346
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=83.90 E-value=2.7 Score=48.63 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=30.6
Q ss_pred HHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEe
Q 001356 103 MRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHD 139 (1093)
Q Consensus 103 q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD 139 (1093)
...|++++|.|||+|..|..+|+||..+|+ ++.+.+
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 346788999999999999999999999998 555544
No 347
>PRK06523 short chain dehydrogenase; Provisional
Probab=83.86 E-value=2.3 Score=46.79 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=31.8
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCCc
Q 001356 502 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDV 544 (1093)
Q Consensus 502 ~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~ 544 (1093)
++++++|+|.|+ ||||.++++.|+..|. ++++++.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~------~v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA------RVVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC------EEEEEeCCh
Confidence 466789999995 8999999999999997 788888653
No 348
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=83.80 E-value=2.8 Score=45.90 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=30.0
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.+.+++|+|.|+ |+||.++++.|+..|. +++++|.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~------~V~~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA------EVILNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC------EEEEEeC
Confidence 367789999995 9999999999999997 7888764
No 349
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=83.74 E-value=7.5 Score=44.92 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=25.2
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeC
Q 001356 109 SNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 109 s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
.+|||.|+ |-+|+.+++.|...|=-+|+.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 36999997 669999999999764236777764
No 350
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=83.65 E-value=1.6 Score=44.33 Aligned_cols=83 Identities=12% Similarity=0.179 Sum_probs=51.5
Q ss_pred CcEEEEc-cCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEE
Q 001356 506 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 584 (1093)
Q Consensus 506 ~~VlivG-~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~ 584 (1093)
+.|+|+| .||||-++++.|+..|- .++++++.+ .-..+...++..+...+ .++..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~-----~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~ 56 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGA-----RVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITF 56 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTT-----EEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCc-----eEEEEeeec-----------------ccccccccccccccccc--ccccc
Confidence 3688998 69999999999999987 688877643 11234444555555433 67777
Q ss_pred EecccCcccc--ccch--hhhhccCCEEEEcc
Q 001356 585 LQIRANPETE--NVFN--DTFWENLNVVVNAL 612 (1093)
Q Consensus 585 ~~~~v~~~~~--~~~~--~~f~~~~DvVi~al 612 (1093)
+..++..... ..++ .+.+...|++|++.
T Consensus 57 ~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~a 88 (167)
T PF00106_consen 57 IECDLSDPESIRALIEEVIKRFGPLDILINNA 88 (167)
T ss_dssp EESETTSHHHHHHHHHHHHHHHSSESEEEEEC
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 7766553221 1111 12345677777664
No 351
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.64 E-value=2.8 Score=47.73 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=30.5
Q ss_pred hcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 504 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 504 ~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
..++|+|.|||.||--....+-.+|. .+|+++|..
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA-----~~VVi~d~~ 203 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGA-----SDVVITDLV 203 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC-----CcEEEeecC
Confidence 46799999999999888888888898 899999854
No 352
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.63 E-value=1.5 Score=55.19 Aligned_cols=89 Identities=19% Similarity=0.211 Sum_probs=62.2
Q ss_pred cCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEE
Q 001356 505 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 584 (1093)
Q Consensus 505 ~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~ 584 (1093)
+.+|+|+|+|-+|..+++.|...|+ +++++|.|.-.. +.+++. + ..+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~~v-----------------------~~~~~~--g--~~v 446 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV------KMTVLDHDPDHI-----------------------ETLRKF--G--MKV 446 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC------CEEEEECCHHHH-----------------------HHHHhc--C--CeE
Confidence 4699999999999999999999998 899999775321 122221 2 234
Q ss_pred EecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc
Q 001356 585 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF 628 (1093)
Q Consensus 585 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~ 628 (1093)
+..+... ..++...-.+++|+||.++||.+.-..+-..+++.
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 447 FYGDATR--MDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred EEEeCCC--HHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 4444332 22333344568999999999998888777776654
No 353
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=83.59 E-value=2.5 Score=47.18 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=28.6
Q ss_pred hcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 504 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 504 ~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.+.+|.|||+|.+|+.+++.|...|... ..+++++|.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~--~~~i~~~~~ 38 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIG--KENIYYHTP 38 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCC--cceEEEECC
Confidence 3468999999999999999999988511 134777764
No 354
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.57 E-value=7.4 Score=44.02 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=29.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCc
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
++|.|||+|-+|..+|.+|+.+|. .++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999996 788998754
No 355
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=83.55 E-value=6.5 Score=48.19 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=29.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCc
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
.+|.|||+|..|+.+|.+|+.+|. .++++|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 379999999999999999999998 799998743
No 356
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.45 E-value=2.3 Score=46.13 Aligned_cols=34 Identities=29% Similarity=0.472 Sum_probs=29.6
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
+.+++++|+|+ |+||..+++.|+..|. +++++|.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~------~vi~~~r 37 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA------KLALIDL 37 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEeC
Confidence 56789999997 9999999999999987 6888873
No 357
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=83.44 E-value=2.1 Score=48.90 Aligned_cols=68 Identities=25% Similarity=0.280 Sum_probs=47.8
Q ss_pred EEcCChhHHHHHHHHHHhCC-ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhC----CCcEEEEeeccc
Q 001356 113 ISGMQGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN----NAVAISALTTEL 187 (1093)
Q Consensus 113 IiG~gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLN----p~V~V~~~~~~l 187 (1093)
|||+|.+|+.+|-.|+..|+ .+|.|+|- -+.+++..+.-|+... ..++|.. .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di-------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~-- 57 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI-------------------NKDKAEGEAMDLQHAASFLPTPKKIRS--G-- 57 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCChhhHHHHHHHHhhcccCCCeEEec--C--
Confidence 68999999999999999997 56999984 1234455555555543 2344442 2
Q ss_pred chhhhcCCceEEEecC
Q 001356 188 TKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 188 ~~~~l~~~dvVV~~~~ 203 (1093)
+.+-+++.|+||.+..
T Consensus 58 ~~~~~~daDivVitag 73 (299)
T TIGR01771 58 DYSDCKDADLVVITAG 73 (299)
T ss_pred CHHHHCCCCEEEECCC
Confidence 3467889999998764
No 358
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=83.43 E-value=8.5 Score=44.11 Aligned_cols=32 Identities=25% Similarity=0.222 Sum_probs=29.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeC
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
.+|.|||+|-+|+.+|-.|+..|.+.++|+|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 47999999999999999999999878999996
No 359
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.43 E-value=6.6 Score=44.29 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=48.9
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC---ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 110 NILISGMQGLGAEIAKNLILAGV---KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGV---g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
+|.|||+|.+|..+++.|...|. .++.+++.+.- .++ +.+....+.+.+. .+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~----~~l~~~~~~~~~~---~~ 57 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHF----NQLYDKYPTVELA---DN 57 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHH----HHHHHHcCCeEEe---CC
Confidence 69999999999999999999983 46666664210 111 1222223333321 11
Q ss_pred cchhhhcCCceEEEecCCHHHHHHHHHH
Q 001356 187 LTKEKLSDFQAVVFTDISLEKAVEFDDY 214 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~~~~~~~~~ln~~ 214 (1093)
..+.+.++|+||+|.-+......+.++
T Consensus 58 -~~e~~~~aDvVilavpp~~~~~vl~~l 84 (277)
T PRK06928 58 -EAEIFTKCDHSFICVPPLAVLPLLKDC 84 (277)
T ss_pred -HHHHHhhCCEEEEecCHHHHHHHHHHH
Confidence 124567899999998765545444444
No 360
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.32 E-value=3.3 Score=49.80 Aligned_cols=93 Identities=20% Similarity=0.207 Sum_probs=57.7
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
++.++|+|+|.|++|..+|+.|...|. ++++.|.+.-.. ....+.|.+.. +++ ...
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~-------------------~~~~~~l~~~g--~~~--~~~ 58 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSE-------------------NPEAQELLEEG--IKV--ICG 58 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccc-------------------hhHHHHHHhcC--CEE--EeC
Confidence 457889999999999999999999997 688887532110 11223454432 333 222
Q ss_pred ccchhhhcC-CceEEEecC-CHHHHHHHHHHHHhcCCCcceEe
Q 001356 186 ELTKEKLSD-FQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIK 226 (1093)
Q Consensus 186 ~l~~~~l~~-~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~ 226 (1093)
....+.+.. +|+||.+.. +.. ..+-+.+++++ +|++.
T Consensus 59 ~~~~~~~~~~~d~vV~s~gi~~~--~~~~~~a~~~~--i~v~~ 97 (447)
T PRK02472 59 SHPLELLDEDFDLMVKNPGIPYT--NPMVEKALEKG--IPIIT 97 (447)
T ss_pred CCCHHHhcCcCCEEEECCCCCCC--CHHHHHHHHCC--CcEEe
Confidence 222233444 899888653 211 23455678888 88875
No 361
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.25 E-value=1.9 Score=48.72 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=30.6
Q ss_pred HHhcCcEEEEccCc-chHHHHHHHHHcccccCCCcceEEec
Q 001356 502 KLEEAKVFVVGSGA-LGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 502 ~L~~~~VlivG~Gg-iG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
.|++++|+|||.|. +|..++..|...|. .+++++
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga------tVtv~~ 189 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA------SVTILH 189 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC------eEEEEe
Confidence 47889999999999 99999999999986 888886
No 362
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=83.22 E-value=0.97 Score=53.90 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=30.6
Q ss_pred cCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCc
Q 001356 505 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 544 (1093)
Q Consensus 505 ~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~ 544 (1093)
..+|+|||+|-+||+.|-.|++.|+ +++|+|+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl------~V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV------PVELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC------cEEEEEccC
Confidence 3589999999999999999999998 899999643
No 363
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=83.10 E-value=3.9 Score=46.94 Aligned_cols=84 Identities=21% Similarity=0.188 Sum_probs=52.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec---
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT--- 185 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~--- 185 (1093)
.+|+|+|+|++|+-.+-.|.++| ..++++-.+. +++ ++++- ...+.....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~--------------------~~~----~l~~~--GL~i~~~~~~~~ 53 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR--------------------RLE----ALKKK--GLRIEDEGGNFT 53 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH--------------------HHH----HHHhC--CeEEecCCCccc
Confidence 47999999999999999999999 7666653211 112 22221 122222211
Q ss_pred -----ccchhhhcCCceEEEecCCHHHHHHHHHHHHhcC
Q 001356 186 -----ELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQ 219 (1093)
Q Consensus 186 -----~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~ 219 (1093)
..+.+.+..+|+||++.-+......+..+....+
T Consensus 54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~~~ 92 (307)
T COG1893 54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPLLG 92 (307)
T ss_pred cccccccChhhcCCCCEEEEEeccccHHHHHHHhhhcCC
Confidence 1123566689999999877666666665544443
No 364
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.06 E-value=5.3 Score=44.37 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=21.5
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC
Q 001356 110 NILISGMQGLGAEIAKNLILAGV 132 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGV 132 (1093)
+|.|||+|-+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999999884
No 365
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=83.05 E-value=4 Score=44.74 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=27.4
Q ss_pred cCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 505 EAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 505 ~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
+++|+|.|+ |+||.++++.|+..|. +++++|.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~------~vi~~~r 34 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY------RVAVADI 34 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC------EEEEEEC
Confidence 457999985 8999999999999987 7888874
No 366
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.94 E-value=2.6 Score=48.43 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=48.7
Q ss_pred eEEEEcC-ChhHHHHHHHHHHhCC-ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001356 110 NILISGM-QGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 187 (1093)
Q Consensus 110 ~VlIiG~-gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l 187 (1093)
+|.|||+ |.+|+.+|-.|+..|+ .+|.|+|-. |++.-+--|+.-.+.+++......-
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~---------------------~a~g~alDL~~~~~~~~i~~~~~~~ 60 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV---------------------NTPGVAADLSHINTPAKVTGYLGPE 60 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC---------------------ccceeehHhHhCCCcceEEEecCCC
Confidence 7999999 9999999999998887 689999964 1111122343333445665431110
Q ss_pred -chhhhcCCceEEEecC
Q 001356 188 -TKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 188 -~~~~l~~~dvVV~~~~ 203 (1093)
..+-+++.|+||.|..
T Consensus 61 ~~y~~~~daDivvitaG 77 (310)
T cd01337 61 ELKKALKGADVVVIPAG 77 (310)
T ss_pred chHHhcCCCCEEEEeCC
Confidence 1256789999998765
No 367
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=82.87 E-value=1.9 Score=49.84 Aligned_cols=34 Identities=12% Similarity=0.255 Sum_probs=28.4
Q ss_pred HHhcCcEEEEccCcchHHHHHHHH-HcccccCCCcceEEec
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITD 541 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa-~~Gv~~~~~g~i~liD 541 (1093)
.|.+++|.|||.|.||.++++.|. ..|+ ++...|
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm------~V~~~~ 176 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNM------PILYNA 176 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCC------EEEEEC
Confidence 588999999999999999999986 5555 666665
No 368
>PRK05442 malate dehydrogenase; Provisional
Probab=82.83 E-value=1.8 Score=50.11 Aligned_cols=74 Identities=9% Similarity=0.160 Sum_probs=47.7
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHhCC-c-----eEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhC----CC
Q 001356 109 SNILISGM-QGLGAEIAKNLILAGV-K-----SVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELN----NA 177 (1093)
Q Consensus 109 s~VlIiG~-gglGseiaKnLvlaGV-g-----~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLN----p~ 177 (1093)
.+|.|||+ |.+|+.+|-.|+..|+ + +|.|+|-.. .+.|+++.+.-|+... +.
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~-----------------~~~~~~g~a~Dl~~~~~~~~~~ 67 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPP-----------------ALKALEGVVMELDDCAFPLLAG 67 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCC-----------------cccccceeehhhhhhhhhhcCC
Confidence 58999998 9999999999998887 4 699998521 0112222222333332 33
Q ss_pred cEEEEeecccchhhhcCCceEEEecC
Q 001356 178 VAISALTTELTKEKLSDFQAVVFTDI 203 (1093)
Q Consensus 178 V~V~~~~~~l~~~~l~~~dvVV~~~~ 203 (1093)
+.+. .. +.+-+++.|+||.+..
T Consensus 68 ~~i~--~~--~y~~~~daDiVVitaG 89 (326)
T PRK05442 68 VVIT--DD--PNVAFKDADVALLVGA 89 (326)
T ss_pred cEEe--cC--hHHHhCCCCEEEEeCC
Confidence 4333 21 2356889999998765
No 369
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=82.67 E-value=3 Score=46.61 Aligned_cols=116 Identities=12% Similarity=0.137 Sum_probs=67.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEE---EEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVT---LHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~it---LvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
.||.|||||.+|..+++.|..-+...+. +.|.+.-....+. +..++-...+.|....|++-|++-.-
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~----------~~~~~~~~l~~ll~~~~DlVVE~A~~ 72 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA----------GRVALLDGLPGLLAWRPDLVVEAAGQ 72 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh----------ccCcccCCHHHHhhcCCCEEEECCCH
Confidence 5899999999999999998654333333 3443321111110 11122222344556678877776543
Q ss_pred cc----chhhhc-CCceEEEecC---CHHHHHHHHHHHHhcCCCcceEeeeecceeE
Q 001356 186 EL----TKEKLS-DFQAVVFTDI---SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFG 234 (1093)
Q Consensus 186 ~l----~~~~l~-~~dvVV~~~~---~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G 234 (1093)
.. -+..|+ +.|+||.... +.+...+|.+.|++++..+-+-++...|+.+
T Consensus 73 ~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD~ 129 (267)
T PRK13301 73 QAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDY 129 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHHH
Confidence 32 224555 7899998754 5567888999999987333333333444433
No 370
>PTZ00117 malate dehydrogenase; Provisional
Probab=82.60 E-value=1.1 Score=51.64 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=31.3
Q ss_pred hcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 504 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 504 ~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
++.||.|||+|.+|..++-.|++.|+ ..|+|+|-|
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~-----~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL-----GDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC-----CeEEEEECC
Confidence 46799999999999999999999998 689999953
No 371
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=82.52 E-value=1.1 Score=51.30 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=32.6
Q ss_pred HHHHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEec
Q 001356 500 QKKLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 500 q~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
.+.|++++|.|||.|.+|..+++||..+|+ ++++.|
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~------~ViV~~ 46 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGV------EVVVGV 46 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcC------EEEEEE
Confidence 468999999999999999999999999999 777765
No 372
>PRK07831 short chain dehydrogenase; Provisional
Probab=82.50 E-value=6 Score=43.58 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=28.0
Q ss_pred hhcCeEEEEcC-C-hhHHHHHHHHHHhCCceEEEEeC
Q 001356 106 LFASNILISGM-Q-GLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 106 L~~s~VlIiG~-g-glGseiaKnLvlaGVg~itLvD~ 140 (1093)
+.+.+++|.|. | |+|..+++.|+..|.. +.++|.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~ 50 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI 50 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence 44678999997 5 7999999999999985 777653
No 373
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=82.38 E-value=1.1 Score=53.70 Aligned_cols=36 Identities=33% Similarity=0.579 Sum_probs=32.6
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.+.+.+|+|+|+|.+|..+++.|...|+ .+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGV-----GKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCC-----CEEEEEeC
Confidence 3778999999999999999999999998 78999864
No 374
>PRK07576 short chain dehydrogenase; Provisional
Probab=82.34 E-value=4.4 Score=44.92 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=32.0
Q ss_pred HHHHhhcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeC
Q 001356 102 TMRRLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 102 ~q~kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
++.++.+++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus 3 ~~~~~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r 41 (264)
T PRK07576 3 TMFDFAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASR 41 (264)
T ss_pred ccccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 455788899999986 7899999999999987 4777775
No 375
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.32 E-value=3.7 Score=45.06 Aligned_cols=26 Identities=12% Similarity=0.372 Sum_probs=22.9
Q ss_pred hcCcEEEEccCcchHHHHHHHHHccc
Q 001356 504 EEAKVFVVGSGALGCEFLKNLALMGV 529 (1093)
Q Consensus 504 ~~~~VlivG~GgiG~e~lknLa~~Gv 529 (1093)
+..||.|||+|.+|..+++.|+..|.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~ 28 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSK 28 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC
Confidence 35689999999999999999998873
No 376
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.32 E-value=5.8 Score=45.74 Aligned_cols=92 Identities=15% Similarity=0.110 Sum_probs=0.0
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHh--------CCCcEEE
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQEL--------NNAVAIS 181 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eL--------Np~V~V~ 181 (1093)
+|.|||+|..|+.++.+|+..| ..++++| |.....+.+.+. .......
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~-----------------------r~~~~~~~i~~~~~~~~~~~g~~~~~~ 61 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKG-VPVRLWA-----------------------RRPEFAAALAAERENREYLPGVALPAE 61 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCC-CeEEEEe-----------------------CCHHHHHHHHHhCcccccCCCCcCCCC
Q ss_pred EeecccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeee
Q 001356 182 ALTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEV 229 (1093)
Q Consensus 182 ~~~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~ 229 (1093)
+....-..+.+..+|+||.+.-+......+..+. .+ ..+|.+..
T Consensus 62 ~~~~~~~~e~~~~aD~Vi~~v~~~~~~~v~~~l~--~~--~~vi~~~~ 105 (328)
T PRK14618 62 LYPTADPEEALAGADFAVVAVPSKALRETLAGLP--RA--LGYVSCAK 105 (328)
T ss_pred eEEeCCHHHHHcCCCEEEEECchHHHHHHHHhcC--cC--CEEEEEee
No 377
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.26 E-value=3.3 Score=52.03 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=61.9
Q ss_pred cCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEE
Q 001356 505 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 584 (1093)
Q Consensus 505 ~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~ 584 (1093)
+.+|+|+|+|-+|..+++.|...|+ .++++|.|.- + .+.+++. ...+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~------~vvvID~d~~-------------------~----v~~~~~~----g~~v 446 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM------RITVLERDIS-------------------A----VNLMRKY----GYKV 446 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC------CEEEEECCHH-------------------H----HHHHHhC----CCeE
Confidence 4689999999999999999999998 8999997742 1 1122221 1234
Q ss_pred EecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhccccc
Q 001356 585 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYF 628 (1093)
Q Consensus 585 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~ 628 (1093)
+..+... ...+...-.+++|+||.++||.+.-..+-..+++.
T Consensus 447 ~~GDat~--~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~ 488 (601)
T PRK03659 447 YYGDATQ--LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQH 488 (601)
T ss_pred EEeeCCC--HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 4444432 22333344678999999999998877777666654
No 378
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.18 E-value=2.4 Score=48.31 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=29.7
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.+.+++++|.|+ ||||.++++.|+..|. +++++|.
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga------~Vv~~~~ 44 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGA------TVVVNDV 44 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEecC
Confidence 466789999985 8999999999999997 7777764
No 379
>PRK06138 short chain dehydrogenase; Provisional
Probab=82.17 E-value=4 Score=44.35 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=29.1
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
|++++++|.|+ |+||..+++.|+..|. ++++++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~------~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA------RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC------eEEEecC
Confidence 46789999996 9999999999999986 7777763
No 380
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.15 E-value=3.9 Score=49.30 Aligned_cols=123 Identities=14% Similarity=0.186 Sum_probs=72.6
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001356 108 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 187 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l 187 (1093)
...|+|+|+|+.|..+|+-|...|. +++..|... . .. ..+.|.+.++.+.+. ....
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~--------~---------~~----~~~~l~~~~~g~~~~--~~~~ 61 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSRE--------Q---------PP----GLDTLAREFPDVELR--CGGF 61 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCCC--------C---------ch----hHHHHHhhcCCcEEE--eCCC
Confidence 4679999999999999999999997 688887422 0 00 112355544455444 3333
Q ss_pred chhhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeecCCceEEecCCCCCCccceeccc
Q 001356 188 TKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIASI 262 (1093)
Q Consensus 188 ~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~i~~I 262 (1093)
+.+.+.++|+||.+.. +.. .-.-..+++++ +|++.-. .+.+.++ -.+--.|.=++|...++.++..|
T Consensus 62 ~~~~~~~~d~vV~sp~i~~~--~p~~~~a~~~~--i~i~~~~--el~~~~~--~~~~I~VTGT~GKTTTt~li~~i 129 (448)
T PRK03803 62 DCELLVQASEIIISPGLALD--TPALRAAAAMG--IEVIGDI--ELFAREA--KAPVIAITGSNGKSTVTTLVGEM 129 (448)
T ss_pred ChHHhcCCCEEEECCCCCCC--CHHHHHHHHCC--CcEEEHH--HHHHHhc--CCCEEEEECCCcHHHHHHHHHHH
Confidence 4566778999988753 211 12334567888 8887521 1122221 12233445556666555555554
No 381
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.14 E-value=3.6 Score=50.02 Aligned_cols=92 Identities=17% Similarity=0.068 Sum_probs=58.9
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
+++++|+|+|+|-.|..+++.|...|.. +++.|.+... + ... ...|.+ .+ .....
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~~~~--~-------------~~~----~~~l~~---~~--~~~~~ 60 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFCNAV--E-------------ARE----VGALAD---AA--LLVET 60 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCCCcc--c-------------chH----HHHHhh---cC--EEEeC
Confidence 4578999999999999999999999985 7777754321 0 000 112433 22 22223
Q ss_pred ccchhhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEe
Q 001356 186 ELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIK 226 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~ 226 (1093)
...++.+.++|+||.+.. +.. ..+-..+++.+ +|++.
T Consensus 61 ~~~~~~~~~~d~vV~SpgI~~~--~p~~~~a~~~~--i~i~~ 98 (468)
T PRK04690 61 EASAQRLAAFDVVVKSPGISPY--RPEALAAAARG--TPFIG 98 (468)
T ss_pred CCChHHccCCCEEEECCCCCCC--CHHHHHHHHcC--CcEEE
Confidence 334566788999998754 222 12344667888 88886
No 382
>PRK08339 short chain dehydrogenase; Provisional
Probab=82.08 E-value=4.4 Score=44.98 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=29.3
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
|+++.++|.|+ ||||.++++.|+..|. +++++|.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~------~V~~~~r 40 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA------DVILLSR 40 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC------EEEEEeC
Confidence 56778999986 7999999999999997 7888773
No 383
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=82.00 E-value=4.1 Score=46.10 Aligned_cols=97 Identities=20% Similarity=0.319 Sum_probs=57.7
Q ss_pred eEEEEcC-ChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec-cc
Q 001356 110 NILISGM-QGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT-EL 187 (1093)
Q Consensus 110 ~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~-~l 187 (1093)
||||+|. |-+|..+++.|...|..-+.+ +.. .-|+ ...+++.+.+.+..|++-|.+-.. .+
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~~-~r~--------------~~dl--~d~~~~~~~~~~~~pd~Vin~aa~~~~ 64 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIAT-SRS--------------DLDL--TDPEAVAKLLEAFKPDVVINCAAYTNV 64 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEEE-STT--------------CS-T--TSHHHHHHHHHHH--SEEEE------H
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEEe-Cch--------------hcCC--CCHHHHHHHHHHhCCCeEeccceeecH
Confidence 7999996 559999999999888643333 433 1222 234567778888889877766321 11
Q ss_pred c-----hhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeeccee
Q 001356 188 T-----KEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGLF 233 (1093)
Q Consensus 188 ~-----~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~ 233 (1093)
+ ++.. ...+......|.++|..++ +++|..++..+|
T Consensus 65 ~~ce~~p~~a--------~~iN~~~~~~la~~~~~~~--~~li~~STd~VF 105 (286)
T PF04321_consen 65 DACEKNPEEA--------YAINVDATKNLAEACKERG--ARLIHISTDYVF 105 (286)
T ss_dssp HHHHHSHHHH--------HHHHTHHHHHHHHHHHHCT---EEEEEEEGGGS
T ss_pred HhhhhChhhh--------HHHhhHHHHHHHHHHHHcC--CcEEEeeccEEE
Confidence 0 0000 0002234457789999999 999998887665
No 384
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=81.95 E-value=3.7 Score=46.06 Aligned_cols=86 Identities=23% Similarity=0.228 Sum_probs=0.0
Q ss_pred CcEEEEccCcchHHHHHHHHHc--ccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEE
Q 001356 506 AKVFVVGSGALGCEFLKNLALM--GVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 583 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~--Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~ 583 (1093)
.||.|||+|.+|..+++.|... ++ .-+.++|.+ ..|++.+++ ...+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~-----elv~v~d~~-------------------~~~a~~~a~-------~~~~~ 50 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINA-----ELYAFYDRN-------------------LEKAENLAS-------KTGAK 50 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCe-----EEEEEECCC-------------------HHHHHHHHH-------hcCCe
Q ss_pred EEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceE
Q 001356 584 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 633 (1093)
Q Consensus 584 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli 633 (1093)
.+... ++++.+.|+|+.|+ ...+..-+-..+.+.++.++
T Consensus 51 ~~~~~----------~ell~~~DvVvi~a-~~~~~~~~~~~al~~Gk~Vv 89 (265)
T PRK13304 51 ACLSI----------DELVEDVDLVVECA-SVNAVEEVVPKSLENGKDVI 89 (265)
T ss_pred eECCH----------HHHhcCCCEEEEcC-ChHHHHHHHHHHHHcCCCEE
No 385
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=81.92 E-value=3.7 Score=49.22 Aligned_cols=106 Identities=17% Similarity=0.107 Sum_probs=73.2
Q ss_pred eEEEEcCChh-HHHHHHHHHH----hCCceEEEEeCCcceeeCCCcceecccCcccchHHH-HHHHHHHHhCCCcEEEEe
Q 001356 110 NILISGMQGL-GAEIAKNLIL----AGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRAL-ASIQKLQELNNAVAISAL 183 (1093)
Q Consensus 110 ~VlIiG~ggl-GseiaKnLvl----aGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~-a~~~~L~eLNp~V~V~~~ 183 (1093)
+|.|||.|+. +-++++.|+. ..+++|+|+|-|.- |. ..+. .+.+...+..+.++|+..
T Consensus 2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~------Rl----------~~v~~l~~~~~~~~g~~~~v~~t 65 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEE------RL----------DIILTIAKRYVEEVGADIKFEKT 65 (425)
T ss_pred EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHH------HH----------HHHHHHHHHHHHhhCCCeEEEEe
Confidence 7999999995 3367777773 45789999996431 11 0122 334445677778888776
Q ss_pred ecccchhhhcCCceEEEecC--CHHHHHHHHHHHHhcCCCcceEeeeecceeEEEE
Q 001356 184 TTELTKEKLSDFQAVVFTDI--SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIF 237 (1093)
Q Consensus 184 ~~~l~~~~l~~~dvVV~~~~--~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf 237 (1093)
++ -++-+++.|+||.+.. ..+.+..=.+++.++| ++-..+.|..|..+
T Consensus 66 tD--~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G----~~gqeT~G~GG~~~ 115 (425)
T cd05197 66 MD--LEDAIIDADFVINQFRVGGLTYREKDEQIPLKYG----VIGQETVGPGGTFS 115 (425)
T ss_pred CC--HHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcC----cccccccCcchhhh
Confidence 54 3467889999998865 5666666667899998 45578888888655
No 386
>PRK12829 short chain dehydrogenase; Provisional
Probab=81.91 E-value=3.6 Score=45.12 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=31.7
Q ss_pred HHHHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 500 QKKLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 500 q~~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
...+++++++|.|+ |+||..+++.|+..|. ++++++.
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~------~V~~~~r 43 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGA------RVHVCDV 43 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCC------EEEEEeC
Confidence 34578899999995 9999999999999997 6888873
No 387
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=81.90 E-value=1.8 Score=47.11 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=34.6
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCc
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
.|+.++|+|.|+|.+|..+|+.|...|.+-+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 57889999999999999999999999999999988643
No 388
>PLN02253 xanthoxin dehydrogenase
Probab=81.87 E-value=3.5 Score=45.91 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=29.8
Q ss_pred HHhcCcEEEEc-cCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG-~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
++.+++++|.| +|+||.++++.|+..|. +++++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~------~v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA------KVCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC------EEEEEeC
Confidence 45678899998 58999999999999997 7888863
No 389
>PLN00106 malate dehydrogenase
Probab=81.86 E-value=5.1 Score=46.30 Aligned_cols=74 Identities=11% Similarity=0.165 Sum_probs=0.0
Q ss_pred hcCeEEEEcC-ChhHHHHHHHHHHhCC-ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 107 FASNILISGM-QGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 107 ~~s~VlIiG~-gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
...+|+|+|+ |.+|+.+|-.|+..|+ +.+.|+|-+.....-+ -|..-.+.+.+....
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~---------------------Dl~~~~~~~~i~~~~ 75 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAA---------------------DVSHINTPAQVRGFL 75 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEc---------------------hhhhCCcCceEEEEe
Q ss_pred cccch-hhhcCCceEEEe
Q 001356 185 TELTK-EKLSDFQAVVFT 201 (1093)
Q Consensus 185 ~~l~~-~~l~~~dvVV~~ 201 (1093)
..-+. +.+++.|+||.+
T Consensus 76 ~~~d~~~~l~~aDiVVit 93 (323)
T PLN00106 76 GDDQLGDALKGADLVIIP 93 (323)
T ss_pred CCCCHHHHcCCCCEEEEe
No 390
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=81.68 E-value=3 Score=48.46 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=29.2
Q ss_pred HhhcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeC
Q 001356 105 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 105 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
+++.++|+|.|+ |=+|+.+++.|...|. +|+.+|.
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~ 47 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDN 47 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 456689999996 5599999999999985 6777775
No 391
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=81.64 E-value=1.3 Score=50.07 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=28.5
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
.+|+|+|+|++|+.++..|+..|. +++++|.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~------~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH------DVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC------eEEEEECC
Confidence 379999999999999999999986 89999853
No 392
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.64 E-value=4.1 Score=49.78 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=57.3
Q ss_pred hcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 107 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 107 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
.+++|+|+|+|..|..+++.|...|. ++++.|... .+ .+.++++ .+.+ ....
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~-------------------~~----~~~l~~~--g~~~--~~~~ 62 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDP-------------------DA----LRPHAER--GVAT--VSTS 62 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HH----HHHHHhC--CCEE--EcCc
Confidence 56799999999999999999999996 788887421 01 1123332 2332 2222
Q ss_pred cchhhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEe
Q 001356 187 LTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIK 226 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~ 226 (1093)
...+.+.++|+||.+.. +.. ..+-..+++.+ ||++.
T Consensus 63 ~~~~~l~~~D~VV~SpGi~~~--~p~~~~a~~~g--i~v~~ 99 (488)
T PRK03369 63 DAVQQIADYALVVTSPGFRPT--APVLAAAAAAG--VPIWG 99 (488)
T ss_pred chHhHhhcCCEEEECCCCCCC--CHHHHHHHHCC--CcEee
Confidence 23456778999998764 222 22355678889 88885
No 393
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=81.55 E-value=5.8 Score=43.50 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=33.9
Q ss_pred HHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 104 RRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 104 ~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
..|+..+|+|.|.|.+|..+|+.|...|.+=+.+.|..
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45789999999999999999999999998877788863
No 394
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=81.54 E-value=0.6 Score=57.11 Aligned_cols=109 Identities=13% Similarity=0.204 Sum_probs=67.4
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHHHc-----ccccC-CCcceEEecCCccccccCCcccccccCccccchHHHHHHHHH
Q 001356 501 KKLEEAKVFVVGSGALGCEFLKNLALM-----GVSCG-NQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAA 574 (1093)
Q Consensus 501 ~~L~~~~VlivG~GgiG~e~lknLa~~-----Gv~~~-~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~ 574 (1093)
.+|...||+++|+|+-|.-+++.|+.. |+.-. -..+|.++|.+-+-... | .+++-..|..-|..
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r-----~~~l~~~k~~fa~~--- 386 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--R-----KDSLQPFKKPFAHD--- 386 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--C-----CccChHHHHHHHhh---
Confidence 478889999999999999999999985 44111 12689999987543322 1 11144445444432
Q ss_pred HhCCCCEEEEEecccCccccccchhhhhcc--CCEEEEcc--CCHHHHHHHhhcccccccceEecc
Q 001356 575 LINPHLNTEALQIRANPETENVFNDTFWEN--LNVVVNAL--DNVNARLYIDQRCLYFQKPLLESG 636 (1093)
Q Consensus 575 ~~np~~~i~~~~~~v~~~~~~~~~~~f~~~--~DvVi~al--Dn~~aR~~i~~~c~~~~~pli~sg 636 (1093)
.+. .. .+ .+.++. .|++|.+. -+.=+...|..++.....|+|.+-
T Consensus 387 --~~~---------~~----~L--~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaL 435 (581)
T PLN03129 387 --HEP---------GA----SL--LEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFAL 435 (581)
T ss_pred --ccc---------CC----CH--HHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEEC
Confidence 111 01 11 233444 78888665 355566777778777778888543
No 395
>PRK14982 acyl-ACP reductase; Provisional
Probab=81.48 E-value=1.2 Score=51.74 Aligned_cols=36 Identities=33% Similarity=0.519 Sum_probs=31.4
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHH-cccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGS-GALGCEFLKNLAL-MGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~-GgiG~e~lknLa~-~Gv~~~~~g~i~liD~ 542 (1093)
.|.+++|+|+|+ |.+|+++++.|+. .|+ .++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv-----~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGV-----AELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCC-----CEEEEEcC
Confidence 578899999999 8999999999985 578 78998864
No 396
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.45 E-value=5.6 Score=43.14 Aligned_cols=35 Identities=26% Similarity=0.530 Sum_probs=29.8
Q ss_pred hhcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 106 LFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 106 L~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
+++++|+|.|+ |++|.++++.|+..|.. +++++..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 56789999996 67999999999999985 8888753
No 397
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=81.37 E-value=1.4 Score=44.49 Aligned_cols=29 Identities=28% Similarity=0.633 Sum_probs=26.0
Q ss_pred EEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 508 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 508 VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
|+|+|+|++|+-++-.|++.|. ++++++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~------~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH------DVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC------EEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCC------ceEEEEc
Confidence 7899999999999999999887 7888763
No 398
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=81.35 E-value=1.4 Score=48.00 Aligned_cols=37 Identities=38% Similarity=0.460 Sum_probs=33.5
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
.|+.++|+|.|.|.+|..+++.|...|. ..+.+.|.+
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~-----~vV~vsD~~ 56 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG-----KVLAVSDPD 56 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC-----EEEEEEcCC
Confidence 5688999999999999999999999998 788888855
No 399
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=81.32 E-value=9.9 Score=43.93 Aligned_cols=95 Identities=25% Similarity=0.257 Sum_probs=0.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCc----------
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAV---------- 178 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V---------- 178 (1093)
.+|+|||+|.+|+.+|..|..+| .+++++| |.... +.+++..-.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G-~~V~~~~-----------------------r~~~~-~~~~~~g~~~~~~~~~~~~~ 57 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAG-ADVTLIG-----------------------RARIG-DELRAHGLTLTDYRGRDVRV 57 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcC-CcEEEEe-----------------------cHHHH-HHHHhcCceeecCCCcceec
Q ss_pred ---EEEEeecccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecce
Q 001356 179 ---AISALTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGL 232 (1093)
Q Consensus 179 ---~V~~~~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~ 232 (1093)
.+...... +.+..+|+||+|..+......+..+....... ..|...+.|+
T Consensus 58 ~~~~~~~~~~~---~~~~~~D~vil~vk~~~~~~~~~~l~~~~~~~-~iii~~~nG~ 110 (341)
T PRK08229 58 PPSAIAFSTDP---AALATADLVLVTVKSAATADAAAALAGHARPG-AVVVSFQNGV 110 (341)
T ss_pred ccceeEeccCh---hhccCCCEEEEEecCcchHHHHHHHHhhCCCC-CEEEEeCCCC
No 400
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=81.26 E-value=4.3 Score=46.96 Aligned_cols=143 Identities=18% Similarity=0.205 Sum_probs=79.4
Q ss_pred cCccCchhhhhccchhHHHHHhhccC------ccccc--ceeeccCCCCCCCCC-CCCCCCCCccCcchhhhhccCHHHH
Q 001356 430 RAVLNPMAAMFGGIVGQEVVKACSGK------FHPLL--QFFYFDSVESLPSEP-LDPRDLQPLNSRYDAQISVFGSKLQ 500 (1093)
Q Consensus 430 ~~el~PvaA~iGGiaAQEVIKaiTgk------f~PI~--q~~~fD~~e~lp~~~-~~~~~~~~~~~Rydrqi~l~G~~~q 500 (1093)
.+.+..|.+.++|.-. -.+|.++.- -.|-. -.++||...+.|..- +....+ ..-|=+ ..|.-.-
T Consensus 49 ~~~~~~m~~~~~~~~~-~g~K~~~~~p~N~~~glp~~~g~i~l~d~~tG~~~ai~~d~~~l--T~~RTa----a~~~laa 121 (326)
T TIGR02992 49 NGEVDVKTAYVPGLDG-FAIKVSPGFFDNPKLGLPSLNGMMVLLSSRTGLLQALLLDNGYL--TDVRTA----AAGAVAA 121 (326)
T ss_pred CCeEEEeehhcCCCCc-eEEEEecccCCccccCCCceeEEEEEEECCCCCceEEEcCCchH--HHHHHH----HHHHHHH
Confidence 3466777777776321 237766541 22322 245677766654321 111111 011111 1122122
Q ss_pred HHH---hcCcEEEEccCcchHHHHHHHH-HcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHh
Q 001356 501 KKL---EEAKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALI 576 (1093)
Q Consensus 501 ~~L---~~~~VlivG~GgiG~e~lknLa-~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~ 576 (1093)
..| ..++++|||+|+.|-..++.|+ ..|+ .+++|.+. ...|++..++.+.+.
T Consensus 122 ~~la~~~~~~v~iiGaG~qA~~~~~al~~~~~i-----~~v~V~~R-------------------~~~~a~~~a~~~~~~ 177 (326)
T TIGR02992 122 RHLAREDSSVVAIFGAGMQARLQLEALTLVRDI-----RSARIWAR-------------------DSAKAEALALQLSSL 177 (326)
T ss_pred HHhCCCCCcEEEEECCCHHHHHHHHHHHHhCCc-----cEEEEECC-------------------CHHHHHHHHHHHHhh
Confidence 223 3468999999999999999997 4777 78888752 234677777777643
Q ss_pred CCCCEEEEEecccCccccccchhhhhccCCEEEEccCC
Q 001356 577 NPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDN 614 (1093)
Q Consensus 577 np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn 614 (1093)
.+ +++.... +. .+.+.++|+|++|+-.
T Consensus 178 ~g-~~v~~~~-----~~-----~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 178 LG-IDVTAAT-----DP-----RAAMSGADIIVTTTPS 204 (326)
T ss_pred cC-ceEEEeC-----CH-----HHHhccCCEEEEecCC
Confidence 32 3443321 11 2345789999999854
No 401
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=81.14 E-value=1.4 Score=49.23 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.0
Q ss_pred cCcEEEEccCcchHHHHHHHHHc
Q 001356 505 EAKVFVVGSGALGCEFLKNLALM 527 (1093)
Q Consensus 505 ~~~VlivG~GgiG~e~lknLa~~ 527 (1093)
..||.|||||+||..+++.|..-
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~ 24 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLAD 24 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcC
Confidence 46899999999999999998654
No 402
>PLN02427 UDP-apiose/xylose synthase
Probab=81.07 E-value=3.1 Score=49.00 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=28.9
Q ss_pred HHhcCcEEEEc-cCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG-~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.++.++|||.| +|-||+.+++.|+..|- -+++.+|.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g-----~~V~~l~r 47 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETP-----HKVLALDV 47 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCC-----CEEEEEec
Confidence 45667899999 59999999999999852 26777774
No 403
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=81.05 E-value=11 Score=43.45 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=29.0
Q ss_pred hhcCeEEEEcC-ChhHHHHHHHHHHhC-CceEEEEeCC
Q 001356 106 LFASNILISGM-QGLGAEIAKNLILAG-VKSVTLHDEG 141 (1093)
Q Consensus 106 L~~s~VlIiG~-gglGseiaKnLvlaG-Vg~itLvD~d 141 (1093)
|+.++|||.|. |++|+.+++.|+..| ..+|+++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 35678999985 779999999999987 4578888743
No 404
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=81.00 E-value=1.3 Score=50.67 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=29.6
Q ss_pred cCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCc
Q 001356 505 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 544 (1093)
Q Consensus 505 ~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~ 544 (1093)
..+|+|||+|++|+-++..|+..|. .++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~------~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF------DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC------eEEEEEeCC
Confidence 3689999999999999999999986 888887554
No 405
>PRK06125 short chain dehydrogenase; Provisional
Probab=80.94 E-value=4.8 Score=44.26 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=29.5
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
+.+++++|.|+ ||||.++++.|+..|. ++++++.
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~------~V~~~~r 39 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC------HLHLVAR 39 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEeC
Confidence 56789999997 8999999999999997 7888764
No 406
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.94 E-value=11 Score=42.51 Aligned_cols=80 Identities=9% Similarity=0.098 Sum_probs=49.8
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhCC---ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 108 ASNILISGMQGLGAEIAKNLILAGV---KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLvlaGV---g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
+.+|.+||+|-+|..++++|+..|. .+|.++|.+ ..++ +.+.+.. .+. ...
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~----~~l~~~~-g~~--~~~ 55 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNL----KNASDKY-GIT--ITT 55 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHH----HHHHHhc-CcE--EeC
Confidence 4579999999999999999999985 346665531 1122 2333211 232 221
Q ss_pred cccchhhhcCCceEEEecCCHHHHHHHHHHH
Q 001356 185 TELTKEKLSDFQAVVFTDISLEKAVEFDDYC 215 (1093)
Q Consensus 185 ~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c 215 (1093)
+ ..+.+.+.|+||+|.-+......+.++.
T Consensus 56 -~-~~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 56 -N-NNEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred -C-cHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 1 2345678999999998755554455543
No 407
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.93 E-value=11 Score=43.39 Aligned_cols=31 Identities=32% Similarity=0.322 Sum_probs=27.1
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
+|.|+|+|++|+.++..|..+| ..+++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEecC
Confidence 6999999999999999999999 467888753
No 408
>PRK08605 D-lactate dehydrogenase; Validated
Probab=80.92 E-value=1.8 Score=50.18 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=28.7
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHH-cccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLAL-MGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~-~Gv~~~~~g~i~liD~ 542 (1093)
.|.+++|.|||+|.+|..+++.|+. .|+ ++...|.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~~g~------~V~~~d~ 178 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKGYGS------DVVAYDP 178 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhcCCC------EEEEECC
Confidence 5788999999999999999999953 444 6777664
No 409
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=80.84 E-value=4.1 Score=49.10 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=28.7
Q ss_pred hcCcEEEEc-cCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 504 EEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 504 ~~~~VlivG-~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
+.+||+|.| .|-||+.+++.|...|. +++++|.+
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~------~V~~ldr~ 153 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD------EVIVIDNF 153 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC------EEEEEeCC
Confidence 345899999 59999999999999987 78888744
No 410
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=80.73 E-value=5.3 Score=43.29 Aligned_cols=36 Identities=31% Similarity=0.415 Sum_probs=29.5
Q ss_pred HhhcCeEEEEc-CChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 105 RLFASNILISG-MQGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 105 kL~~s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
.+++++|+|.| .|++|.++++.|...|. +|++++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45678899999 57799999999999997 57777653
No 411
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=80.64 E-value=5.5 Score=46.53 Aligned_cols=97 Identities=16% Similarity=0.082 Sum_probs=57.2
Q ss_pred cEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEEEe
Q 001356 507 KVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 586 (1093)
Q Consensus 507 ~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~~ 586 (1093)
+|+|+|+|.||.-.+..+..+|. .+|+++|.+.- |.+.|++. ...-.+....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga-----~~Viv~d~~~~-------------------Rl~~A~~~----~g~~~~~~~~ 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGA-----SVVIVVDRSPE-------------------RLELAKEA----GGADVVVNPS 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC-----ceEEEeCCCHH-------------------HHHHHHHh----CCCeEeecCc
Confidence 89999999999999999999999 89999985321 22222221 1100000000
Q ss_pred cccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceE
Q 001356 587 IRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLL 633 (1093)
Q Consensus 587 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli 633 (1093)
.. ...+.++...--..+|+||+|+.+..+....-+.++..+.-.+
T Consensus 223 ~~--~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 223 ED--DAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVV 267 (350)
T ss_pred cc--cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 00 0001111000013699999999988877777777766555444
No 412
>PRK12367 short chain dehydrogenase; Provisional
Probab=80.64 E-value=1.8 Score=47.80 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=34.7
Q ss_pred HHHHHHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 498 KLQKKLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 498 ~~q~~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
-.|.++++++++|.|+ ||||.++++.|+..|. +++++|.+
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~------~Vi~~~r~ 47 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA------KVIGLTHS 47 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC------EEEEEECC
Confidence 3578999999999996 8999999999999997 78887754
No 413
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=80.61 E-value=0.69 Score=52.35 Aligned_cols=41 Identities=34% Similarity=0.555 Sum_probs=31.5
Q ss_pred EEEEc-cCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcc
Q 001356 508 VFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQ 553 (1093)
Q Consensus 508 VlivG-~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQ 553 (1093)
|+|.| +|.||+|+++.|+..|. .+|+++|.|--...++.+.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-----~~lil~d~~E~~l~~l~~~ 42 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-----KKLILFDRDENKLYELERE 42 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------SEEEEEES-HHHHHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCC-----CeEEEeCCChhHHHHHHHH
Confidence 68887 68999999999999999 8999999776555444443
No 414
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=80.60 E-value=2.8 Score=46.00 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=30.7
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCCc
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDV 544 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~ 544 (1093)
+.+++++|.|+ |+||.++++.|+..|. +++++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~------~v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA------RVVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC------EEEEEcCCH
Confidence 55778999995 9999999999999997 788887543
No 415
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=80.60 E-value=2.7 Score=48.36 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=0.0
Q ss_pred eEEEEcC-ChhHHHHHHHHHHhCC-ceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001356 110 NILISGM-QGLGAEIAKNLILAGV-KSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 187 (1093)
Q Consensus 110 ~VlIiG~-gglGseiaKnLvlaGV-g~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l 187 (1093)
+|.|||+ |.+|+.+|-.|+..|+ ..+.|+| +-+ ++.-+--|+...+.++|......
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~D-------------------i~~--a~g~a~DL~~~~~~~~i~~~~~~- 58 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYD-------------------IAG--AAGVAADLSHIPTAASVKGFSGE- 58 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEec-------------------CCC--CcEEEchhhcCCcCceEEEecCC-
Q ss_pred c--hhhhcCCceEEEe
Q 001356 188 T--KEKLSDFQAVVFT 201 (1093)
Q Consensus 188 ~--~~~l~~~dvVV~~ 201 (1093)
+ .+-+++.|+||.|
T Consensus 59 ~~~~~~~~daDivvit 74 (312)
T TIGR01772 59 EGLENALKGADVVVIP 74 (312)
T ss_pred CchHHHcCCCCEEEEe
No 416
>PLN02688 pyrroline-5-carboxylate reductase
Probab=80.59 E-value=10 Score=42.17 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=46.7
Q ss_pred eEEEEcCChhHHHHHHHHHHhCC---ceEEEE-eCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 110 NILISGMQGLGAEIAKNLILAGV---KSVTLH-DEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGV---g~itLv-D~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
+|.+||+|.+|..++++|..+|. ..|+++ |. ...|++ .+.+. .+.+. .
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r-------------------~~~~~~----~~~~~--g~~~~--~- 53 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS-------------------NPARRD----VFQSL--GVKTA--A- 53 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC-------------------CHHHHH----HHHHc--CCEEe--C-
Confidence 69999999999999999999985 245554 21 111222 23332 23321 1
Q ss_pred ccchhhhcCCceEEEecCCHHHHHHHHHH
Q 001356 186 ELTKEKLSDFQAVVFTDISLEKAVEFDDY 214 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~~~~~~~~ln~~ 214 (1093)
+ ..+..++.|+||.|..+......+.++
T Consensus 54 ~-~~e~~~~aDvVil~v~~~~~~~vl~~l 81 (266)
T PLN02688 54 S-NTEVVKSSDVIILAVKPQVVKDVLTEL 81 (266)
T ss_pred C-hHHHHhcCCEEEEEECcHHHHHHHHHH
Confidence 1 224567899999998655544444444
No 417
>PRK05866 short chain dehydrogenase; Provisional
Probab=80.59 E-value=3.3 Score=46.92 Aligned_cols=34 Identities=15% Similarity=0.329 Sum_probs=29.1
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
+.+++|+|.|+ ||||.++++.|+..|. ++++++.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~------~Vi~~~R 72 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGA------TVVAVAR 72 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEEC
Confidence 45678999995 9999999999999997 7888763
No 418
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=80.58 E-value=9 Score=44.79 Aligned_cols=113 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred CHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEE--EeCCc--ceeeCCCcceecccC-----------cccchH
Q 001356 99 GRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTL--HDEGV--VELWDLSSNFIFSED-----------DVGKNR 163 (1093)
Q Consensus 99 G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itL--vD~d~--V~~sdL~rqf~~~~~-----------diGk~K 163 (1093)
+.+.++--.+.+|.|||+||-|+-++.+|+..|+..+.+ +|.|. ...+...+-+++.++ ++|+.-
T Consensus 8 ~~~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~~~~G~~~ 87 (349)
T TIGR00065 8 FRELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGKKLTRGLGAGGNPEIGRKA 87 (349)
T ss_pred hhhhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCCCCCCCCCCCCCHHHHHHH
Q ss_pred HHHHHHHHHHhCCCcEEEEeecccchhhhcCCceEEEecC-----CHHHHHHHHHHHHhcCCCcceEeeeec
Q 001356 164 ALASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFTDI-----SLEKAVEFDDYCHNHQPPIAFIKSEVR 230 (1093)
Q Consensus 164 a~a~~~~L~eLNp~V~V~~~~~~l~~~~l~~~dvVV~~~~-----~~~~~~~ln~~c~~~~~~ip~I~~~~~ 230 (1093)
++...+++++ .++++|.|+.+.. ---..-.+.+++++.+ ++.+..-+.
T Consensus 88 aee~~d~Ir~-----------------~le~~D~vfI~aglGGGTGSG~apvia~~ake~~--~l~vaivt~ 140 (349)
T TIGR00065 88 AEESRDEIRK-----------------LLEGADMVFITAGMGGGTGTGAAPVVAKIAKELG--ALTVAVVTK 140 (349)
T ss_pred HHHHHHHHHH-----------------HHhCCCEEEEEEeccCccchhHHHHHHHHHHHcC--CCEEEEEeC
No 419
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.53 E-value=1.7 Score=50.28 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=29.1
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHhCCce------EEEEeCC
Q 001356 109 SNILISGM-QGLGAEIAKNLILAGVKS------VTLHDEG 141 (1093)
Q Consensus 109 s~VlIiG~-gglGseiaKnLvlaGVg~------itLvD~d 141 (1093)
.+|+|+|+ |.+|+.++..|+..|+-. +.|+|..
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 37999999 999999999999988755 9999864
No 420
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.50 E-value=5.1 Score=43.30 Aligned_cols=33 Identities=33% Similarity=0.475 Sum_probs=27.8
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEe-c
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTIT-D 541 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~li-D 541 (1093)
|++++|+|+|+ |+||.++++.|+..|. +++++ +
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~------~v~~~~~ 37 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGA------KVVIAYD 37 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC------EEEEEcC
Confidence 56789999995 9999999999999998 56655 5
No 421
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=80.46 E-value=4.3 Score=43.00 Aligned_cols=109 Identities=19% Similarity=0.149 Sum_probs=61.7
Q ss_pred cEEEEccCcchHH-HHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchH-HHHHHHHHHhCCCCEEEE
Q 001356 507 KVFVVGSGALGCE-FLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKS-TVAASAAALINPHLNTEA 584 (1093)
Q Consensus 507 ~VlivG~GgiG~e-~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka-~va~~~l~~~np~~~i~~ 584 (1093)
||.|||+|+.-.. .+..+... ...-+.++|.|+|-|. .|.- .+ ..+.+.+++.++.++|+.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~-~~~l~~~ei~L~Did~------~RL~----------~~~~~~~~~~~~~~~~~~v~~ 63 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLR-TEELSGSEIVLMDIDE------ERLE----------IVERLARRMVEEAGADLKVEA 63 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHC-TTTSTEEEEEEE-SCH------HHHH----------HHHHHHHHHHHHCTTSSEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhc-CccCCCcEEEEEcCCH------HHHH----------HHHHHHHHHHHhcCCCeEEEE
Confidence 6899999998855 33433332 1112237999998665 1111 12 244555667788888877
Q ss_pred EecccCccccccchhhhhccCCEEEEcc--CCHHHHHHHhhcccccccceEeccccCccc
Q 001356 585 LQIRANPETENVFNDTFWENLNVVVNAL--DNVNARLYIDQRCLYFQKPLLESGTLGAKC 642 (1093)
Q Consensus 585 ~~~~v~~~~~~~~~~~f~~~~DvVi~al--Dn~~aR~~i~~~c~~~~~pli~sgt~G~~G 642 (1093)
..++ .+-+++.|+||+++ ...++|..=-+.+.++++.-...-|.|..|
T Consensus 64 ttd~----------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG 113 (183)
T PF02056_consen 64 TTDR----------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGG 113 (183)
T ss_dssp ESSH----------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHH
T ss_pred eCCH----------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccH
Confidence 7542 24568999999875 444555555556666665543333444433
No 422
>PRK06940 short chain dehydrogenase; Provisional
Probab=80.43 E-value=3.7 Score=45.89 Aligned_cols=31 Identities=26% Similarity=0.534 Sum_probs=26.0
Q ss_pred cCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 505 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 505 ~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
++.++|.|+||||.++++.|+ .|. +++++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~------~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK------KVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC------EEEEEeC
Confidence 457888899999999999996 675 8888874
No 423
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=80.40 E-value=7 Score=40.44 Aligned_cols=86 Identities=22% Similarity=0.241 Sum_probs=52.9
Q ss_pred EEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEEEe
Q 001356 508 VFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEALQ 586 (1093)
Q Consensus 508 VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~~~ 586 (1093)
|+|+|+ |.+|..+++.|...|. +++++= |. ..|... .+ +++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~------~V~~~~---------------R~----~~~~~~--------~~--~~~~~~ 45 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH------EVTALV---------------RS----PSKAED--------SP--GVEIIQ 45 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS------EEEEEE---------------SS----GGGHHH--------CT--TEEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCCC------EEEEEe---------------cC----chhccc--------cc--ccccce
Confidence 799997 9999999999999996 666541 11 112222 34 455555
Q ss_pred cccCccccccchhhhhccCCEEEEccCC----HHHHHHHhhcccccccc
Q 001356 587 IRANPETENVFNDTFWENLNVVVNALDN----VNARLYIDQRCLYFQKP 631 (1093)
Q Consensus 587 ~~v~~~~~~~~~~~f~~~~DvVi~alDn----~~aR~~i~~~c~~~~~p 631 (1093)
..+.+. +.+ ...++++|.||.++.. ...-..+-+.|...+++
T Consensus 46 ~d~~d~-~~~--~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 46 GDLFDP-DSV--KAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp SCTTCH-HHH--HHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSS
T ss_pred eeehhh-hhh--hhhhhhcchhhhhhhhhcccccccccccccccccccc
Confidence 555432 111 2456789999999863 23233444555555554
No 424
>PRK08251 short chain dehydrogenase; Provisional
Probab=80.39 E-value=8.4 Score=41.86 Aligned_cols=60 Identities=22% Similarity=0.352 Sum_probs=42.3
Q ss_pred cCeEEEEc-CChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 108 ASNILISG-MQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 108 ~s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
+++|+|.| .||+|.++++.|+..|. ++++++.+. .+...+...+.+.+|..++.....+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 46788987 67899999999999995 677776531 2344455566666777677666554
Q ss_pred c
Q 001356 187 L 187 (1093)
Q Consensus 187 l 187 (1093)
+
T Consensus 62 ~ 62 (248)
T PRK08251 62 V 62 (248)
T ss_pred C
Confidence 4
No 425
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=80.39 E-value=1.5 Score=50.87 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=32.1
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
.|.+++|.|||+|.+|..+++.|...|. +++.+|..
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~------~V~~~d~~ 178 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA------TITAYDAY 178 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEEeCC
Confidence 4788899999999999999999999887 88888853
No 426
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=80.37 E-value=1.9 Score=47.88 Aligned_cols=39 Identities=31% Similarity=0.410 Sum_probs=33.5
Q ss_pred HHhhcCeEEEEcCChhHHHHHHHHHHh----CC------ceEEEEeCCc
Q 001356 104 RRLFASNILISGMQGLGAEIAKNLILA----GV------KSVTLHDEGV 142 (1093)
Q Consensus 104 ~kL~~s~VlIiG~gglGseiaKnLvla----GV------g~itLvD~d~ 142 (1093)
++|++.+|+++|+|..|.-|++.|+.+ |+ ++|.++|.+=
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~G 69 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKG 69 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTE
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccc
Confidence 358999999999999999999999999 99 8999999764
No 427
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=80.36 E-value=8.4 Score=43.52 Aligned_cols=90 Identities=22% Similarity=0.282 Sum_probs=58.7
Q ss_pred eEEEEcCCh-hHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecccc
Q 001356 110 NILISGMQG-LGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTELT 188 (1093)
Q Consensus 110 ~VlIiG~gg-lGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l~ 188 (1093)
+|||.|.+| ||.++++.|- |-..++-.|...++. .-.+.+.+.+++..|++-|++-.-
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~Di----------------td~~~v~~~i~~~~PDvVIn~AAy--- 60 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAELDI----------------TDPDAVLEVIRETRPDVVINAAAY--- 60 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCccccc----------------cChHHHHHHHHhhCCCEEEECccc---
Confidence 499999877 9999999987 444555455433322 234567888999999988876321
Q ss_pred hhhhcCCceEEEecCCH--------HHHHHHHHHHHhcCCCcceEeeee
Q 001356 189 KEKLSDFQAVVFTDISL--------EKAVEFDDYCHNHQPPIAFIKSEV 229 (1093)
Q Consensus 189 ~~~l~~~dvVV~~~~~~--------~~~~~ln~~c~~~~~~ip~I~~~~ 229 (1093)
.-|-.|.... .....+.++|++.| .++|..++
T Consensus 61 -------t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiST 100 (281)
T COG1091 61 -------TAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHIST 100 (281)
T ss_pred -------cccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEeec
Confidence 1112222222 23456668999999 88888664
No 428
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.31 E-value=7.7 Score=44.38 Aligned_cols=104 Identities=21% Similarity=0.149 Sum_probs=0.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEE------
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISA------ 182 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~------ 182 (1093)
.+|.|||+|-.|+.+|.+|...|. +|+++|.+.- +.+.+..++...-+...-..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~~-------------------~~~~~~~~~~~~l~~l~~~g~~~~~~ 62 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADPA-------------------AAAAAPAYIAGRLEDLAAFDLLDGEA 62 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCHH-------------------HHHHHHHHHHHHHHHHHHcCCCchhh
Q ss_pred --------eecccchhhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEeeeecce
Q 001356 183 --------LTTELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGL 232 (1093)
Q Consensus 183 --------~~~~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~~~~~G~ 232 (1093)
....--.+.+.++|+|+.+.. +.+....+-..+.....+-.+|.+.+.+.
T Consensus 63 ~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~ 121 (308)
T PRK06129 63 PDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSAL 121 (308)
T ss_pred HHHHhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCC
No 429
>PRK13529 malate dehydrogenase; Provisional
Probab=80.22 E-value=0.91 Score=55.43 Aligned_cols=118 Identities=11% Similarity=0.211 Sum_probs=66.9
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHHH----cccccC-CCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHH
Q 001356 501 KKLEEAKVFVVGSGALGCEFLKNLAL----MGVSCG-NQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAAL 575 (1093)
Q Consensus 501 ~~L~~~~VlivG~GgiG~e~lknLa~----~Gv~~~-~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~ 575 (1093)
.+|.+.||+++|+|+-|.-+++.|+. .|+.-. -..+|.++|.+-+-... | .|+...|..-|..
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~--r------~~l~~~k~~fa~~---- 358 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDD--M------PDLLDFQKPYARK---- 358 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCC--C------CcchHHHHHHhhh----
Confidence 46888999999999999999999987 577211 12589999976543321 1 1233444443332
Q ss_pred hCCCCEEEEEecccCccccccchhhhhccC--CEEEEccC--CHHHHHHHhhcccccccceEeccc
Q 001356 576 INPHLNTEALQIRANPETENVFNDTFWENL--NVVVNALD--NVNARLYIDQRCLYFQKPLLESGT 637 (1093)
Q Consensus 576 ~np~~~i~~~~~~v~~~~~~~~~~~f~~~~--DvVi~alD--n~~aR~~i~~~c~~~~~pli~sgt 637 (1093)
.++ +. ..... .....+ .+-++.. |++|.+.- +.=+...|..++.....|+|.+-+
T Consensus 359 ~~~-~~--~~~~~--~~~~~L--~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 417 (563)
T PRK13529 359 REE-LA--DWDTE--GDVISL--LEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLS 417 (563)
T ss_pred ccc-cc--ccccc--cCCCCH--HHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 111 10 00000 000011 2334444 88886543 455566777777666778885433
No 430
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=80.12 E-value=2.3 Score=47.92 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=30.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeC
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
.+|+|+|+||.+..++-.|...|+++|+|++.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 58999999999999999999999999999975
No 431
>PRK08655 prephenate dehydrogenase; Provisional
Probab=80.11 E-value=3.2 Score=50.01 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=54.6
Q ss_pred CcEEEEc-cCcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEEE
Q 001356 506 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTEA 584 (1093)
Q Consensus 506 ~~VlivG-~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~~ 584 (1093)
.+|+||| +|++|..+++.|...|. +++++|.+. .++..++ .+.. + ..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~------~V~v~~r~~-------------------~~~~~~a---~~~g--v--~~ 48 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF------EVIVTGRDP-------------------KKGKEVA---KELG--V--EY 48 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC------EEEEEECCh-------------------HHHHHHH---HHcC--C--ee
Confidence 3799997 89999999999999886 788887431 1111111 1111 1 11
Q ss_pred EecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhccc--ccccceEeccc
Q 001356 585 LQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCL--YFQKPLLESGT 637 (1093)
Q Consensus 585 ~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~--~~~~pli~sgt 637 (1093)
..+. .+...++|+||.|+-.......+..... ..+..+++.++
T Consensus 49 -----~~~~-----~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 49 -----ANDN-----IDAAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred -----ccCH-----HHHhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 1111 2345678999999876666666655542 23445677665
No 432
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=80.09 E-value=6.3 Score=45.53 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=51.7
Q ss_pred HHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEE
Q 001356 102 TMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAIS 181 (1093)
Q Consensus 102 ~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~ 181 (1093)
-...++.++|.|+|+|.+|.++|+.|.-.| ..|.-...... +-+...+...+
T Consensus 156 ~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~-------------------~~~~~~~~~~~-------- 207 (336)
T KOG0069|consen 156 LGYDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQL-------------------PPEEAYEYYAE-------- 207 (336)
T ss_pred ccccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCC-------------------chhhHHHhccc--------
Confidence 346789999999999999999999999866 33333221000 11111111111
Q ss_pred EeecccchhhhcCCceEEEec-CCHHHHHHHHH
Q 001356 182 ALTTELTKEKLSDFQAVVFTD-ISLEKAVEFDD 213 (1093)
Q Consensus 182 ~~~~~l~~~~l~~~dvVV~~~-~~~~~~~~ln~ 213 (1093)
..+ .++++.+.|+||+|. .+.+++..+|+
T Consensus 208 --~~d-~~~~~~~sD~ivv~~pLt~~T~~liNk 237 (336)
T KOG0069|consen 208 --FVD-IEELLANSDVIVVNCPLTKETRHLINK 237 (336)
T ss_pred --ccC-HHHHHhhCCEEEEecCCCHHHHHHhhH
Confidence 111 246888999887665 57778888886
No 433
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=80.07 E-value=2.6 Score=53.97 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=29.9
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
++|.|||+|..|+.++-.+++.|+ .++++|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~------~V~l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV------PVIMKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC------eEEEEeCC
Confidence 579999999999999999999998 99999965
No 434
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=80.07 E-value=9.3 Score=42.93 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=25.0
Q ss_pred eEEEEcC-ChhHHHHHHHHHHhCC-ceEEEEeC
Q 001356 110 NILISGM-QGLGAEIAKNLILAGV-KSVTLHDE 140 (1093)
Q Consensus 110 ~VlIiG~-gglGseiaKnLvlaGV-g~itLvD~ 140 (1093)
+|+|.|. |.+|.++++.|...|- .+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899986 7799999999999873 46777663
No 435
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=79.97 E-value=1.5 Score=50.45 Aligned_cols=35 Identities=40% Similarity=0.621 Sum_probs=31.8
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
+.+.+|+|+|+|.+|..+++.|...|. .+++++|.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-----~~V~v~~r 210 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGV-----AEITIANR 210 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCC-----CEEEEEeC
Confidence 678999999999999999999999888 78999874
No 436
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=79.95 E-value=9.9 Score=43.89 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=30.3
Q ss_pred hcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeC
Q 001356 107 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 107 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
...+|+|+|+|++|..++..+...|++++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 4679999999999999999888999988888775
No 437
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=79.78 E-value=4.9 Score=46.92 Aligned_cols=89 Identities=12% Similarity=0.018 Sum_probs=57.7
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec-c
Q 001356 108 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT-E 186 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~-~ 186 (1093)
..+|+|+|+|++|.-.+..+-+.|...|.++|.+.- |.+-+++. ...-.+..... .
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~-------------------Rl~~A~~~----~g~~~~~~~~~~~ 225 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE-------------------RLELAKEA----GGADVVVNPSEDD 225 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH-------------------HHHHHHHh----CCCeEeecCcccc
Confidence 338999999999999999999999999999986321 22222221 11111111101 0
Q ss_pred cch---hhh--cCCceEEEecCCHHHHHHHHHHHHhcC
Q 001356 187 LTK---EKL--SDFQAVVFTDISLEKAVEFDDYCHNHQ 219 (1093)
Q Consensus 187 l~~---~~l--~~~dvVV~~~~~~~~~~~ln~~c~~~~ 219 (1093)
... +.- ..+|+||.|..+........++++..|
T Consensus 226 ~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG 263 (350)
T COG1063 226 AGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGG 263 (350)
T ss_pred HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCC
Confidence 000 111 369999999998777777888888887
No 438
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=79.76 E-value=5.3 Score=45.88 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=21.9
Q ss_pred CcEEEEccCcchHHHHHHHHHcc
Q 001356 506 AKVFVVGSGALGCEFLKNLALMG 528 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~G 528 (1093)
.||+|+|+|++||-++-.|++.|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g 23 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG 23 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC
Confidence 48999999999999999999998
No 439
>PRK12939 short chain dehydrogenase; Provisional
Probab=79.75 E-value=3.7 Score=44.57 Aligned_cols=33 Identities=30% Similarity=0.549 Sum_probs=28.2
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEec
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
+.+++|+|.|+ |+||.++++.|+..|. ++++++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~------~v~~~~ 38 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA------TVAFND 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC------EEEEEe
Confidence 45788999995 9999999999999997 677765
No 440
>PRK12744 short chain dehydrogenase; Provisional
Probab=79.73 E-value=4.1 Score=44.76 Aligned_cols=27 Identities=30% Similarity=0.478 Sum_probs=24.1
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHHccc
Q 001356 503 LEEAKVFVVG-SGALGCEFLKNLALMGV 529 (1093)
Q Consensus 503 L~~~~VlivG-~GgiG~e~lknLa~~Gv 529 (1093)
|++++|+|.| .|+||.++++.|+..|.
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~ 33 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGA 33 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC
Confidence 5678999998 59999999999999987
No 441
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=79.71 E-value=5.2 Score=45.51 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=62.9
Q ss_pred eEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeeccc-c
Q 001356 110 NILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL-T 188 (1093)
Q Consensus 110 ~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l-~ 188 (1093)
+|.+||+|-+|..++.+|+..|. .++++|.+.- ... +. +.|...+....+.+ -..++-+......- .
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~~-~~~-----~~---~~g~~~~~s~~~~~--~~advVi~~v~~~~~v 69 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGPV-ADE-----LL---SLGAVSVETARQVT--EASDIIFIMVPDTPQV 69 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCHh-HHH-----HH---HcCCeecCCHHHHH--hcCCEEEEeCCChHHH
Confidence 69999999999999999999996 7788876431 111 11 12222222222211 13344444443321 0
Q ss_pred hhh-------h---cCCceEEEec-CCHHHHHHHHHHHHhcCCCcceEeeeecc
Q 001356 189 KEK-------L---SDFQAVVFTD-ISLEKAVEFDDYCHNHQPPIAFIKSEVRG 231 (1093)
Q Consensus 189 ~~~-------l---~~~dvVV~~~-~~~~~~~~ln~~c~~~~~~ip~I~~~~~G 231 (1093)
.+. + ..=.+||++. .+.....++.+.+.+++ +.|+.+-+.|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G--~~~vdaPVsG 121 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELG--GDYLDAPVSG 121 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcC--CCEEEecCCC
Confidence 111 1 1224566554 47777788888888888 7788766544
No 442
>PRK05875 short chain dehydrogenase; Provisional
Probab=79.68 E-value=5.2 Score=44.42 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=29.5
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
+.+++|+|.|+ |+||.++++.|+..|. ++++++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~------~V~~~~r 39 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA------AVMIVGR 39 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC------eEEEEeC
Confidence 56789999996 8999999999999997 7887763
No 443
>PRK06141 ornithine cyclodeaminase; Validated
Probab=79.56 E-value=5.3 Score=45.98 Aligned_cols=137 Identities=19% Similarity=0.241 Sum_probs=78.7
Q ss_pred CccCchhhhhcc-chhHHHHHhhcc------Ccccccc--eeeccCCCCCCCCCCCCCCCCCccCcchhhhhc-----cC
Q 001356 431 AVLNPMAAMFGG-IVGQEVVKACSG------KFHPLLQ--FFYFDSVESLPSEPLDPRDLQPLNSRYDAQISV-----FG 496 (1093)
Q Consensus 431 ~el~PvaA~iGG-iaAQEVIKaiTg------kf~PI~q--~~~fD~~e~lp~~~~~~~~~~~~~~Rydrqi~l-----~G 496 (1093)
+.+..|.+.+++ ++ .+|.++. +.-|-.+ .++||.-.+.|..-++...+ -.+|. .+
T Consensus 48 ~~~~~mp~~~~~~~~---g~K~~~~~p~N~~~glp~~~g~v~l~d~~tG~p~ai~d~~~l--------T~~RTaa~sala 116 (314)
T PRK06141 48 ATLLLMPAWNEGRYI---GVKAVTVFPGNPARGLPGLHSTYLLFDGRTGEPLALVDGTEL--------TARRTAAASALA 116 (314)
T ss_pred ceEEEeeeecCCCee---EEEEEeecCCCCcCCCCceEEEEEEEECCCCCEEEEEcCcch--------hcchhHHHHHHH
Confidence 455666666643 22 3787663 2234332 56688777766432221111 11111 12
Q ss_pred HHHHHHHhcCcEEEEccCcchHHHHHHHHH-cccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHH
Q 001356 497 SKLQKKLEEAKVFVVGSGALGCEFLKNLAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAAL 575 (1093)
Q Consensus 497 ~~~q~~L~~~~VlivG~GgiG~e~lknLa~-~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~ 575 (1093)
.+...+...++|+|||+|+.|..+++.+.. .|+ .+|++.+. ...|++..++.+.+
T Consensus 117 ~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~-----~~V~V~~R-------------------s~~~a~~~a~~~~~ 172 (314)
T PRK06141 117 ASYLARKDASRLLVVGTGRLASLLALAHASVRPI-----KQVRVWGR-------------------DPAKAEALAAELRA 172 (314)
T ss_pred HHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCC-----CEEEEEcC-------------------CHHHHHHHHHHHHh
Confidence 222233356899999999999999987766 576 78888752 24567777777765
Q ss_pred hCCCCEEEEEecccCccccccchhhhhccCCEEEEccCC
Q 001356 576 INPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDN 614 (1093)
Q Consensus 576 ~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn 614 (1093)
.. ..+.... +. .+...++|+|++|+..
T Consensus 173 ~g--~~~~~~~-----~~-----~~av~~aDIVi~aT~s 199 (314)
T PRK06141 173 QG--FDAEVVT-----DL-----EAAVRQADIISCATLS 199 (314)
T ss_pred cC--CceEEeC-----CH-----HHHHhcCCEEEEeeCC
Confidence 32 2233221 11 2345789999999873
No 444
>PRK10537 voltage-gated potassium channel; Provisional
Probab=79.52 E-value=4.4 Score=48.11 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=32.0
Q ss_pred hcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccc
Q 001356 504 EEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE 546 (1093)
Q Consensus 504 ~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie 546 (1093)
++.+|+|+|.|.+|.++++.|...|. .++++|.|.++
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~------~vvVId~d~~~ 275 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQ------AVTVIVPLGLE 275 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCC------CEEEEECchhh
Confidence 35789999999999999999988886 88899988554
No 445
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=79.44 E-value=1.6 Score=49.66 Aligned_cols=35 Identities=17% Similarity=0.447 Sum_probs=30.9
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.|.+++|+|+|+|++|..+++.|..+|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~------~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA------RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC------EEEEEeC
Confidence 4678899999999999999999999997 7888763
No 446
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=79.40 E-value=7.8 Score=47.61 Aligned_cols=104 Identities=21% Similarity=0.206 Sum_probs=0.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEE------
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISA------ 182 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~------ 182 (1093)
++|.|||+|..|+.||.+|+.+|. .++++| +...+.+.+.+++++.-....-..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d-------------------~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~ 65 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGH-QVLLYD-------------------IRAEALARAIAGIEARLNSLVTKGKLTAEE 65 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCC-eEEEEe-------------------CCHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q ss_pred -------eecccchhhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEeeeecce
Q 001356 183 -------LTTELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGL 232 (1093)
Q Consensus 183 -------~~~~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~~~~~G~ 232 (1093)
....-+.+-+.++|+||.+.. +.+.+..+-.-....-++-.+|.+.+..+
T Consensus 66 ~~~~~~~i~~~~~~~~l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl 123 (503)
T TIGR02279 66 CERTLKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSL 123 (503)
T ss_pred HHHHHhccEEeCCHHHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC
No 447
>PRK06057 short chain dehydrogenase; Provisional
Probab=79.31 E-value=2.1 Score=46.96 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=31.1
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 502 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 502 ~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
++.+++|+|+|+ |+||..+++.|+..|. +++++|.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~------~v~~~~r~ 40 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA------TVVVGDID 40 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC------EEEEEeCC
Confidence 367789999996 9999999999999997 78888744
No 448
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=79.29 E-value=4.6 Score=46.07 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=28.4
Q ss_pred EEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 508 VFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 508 VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
|.|||+|.+|+.++-.|++.|+ ++++++|.|
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l-----~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKEL-----GDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCC-----cEEEEEeCC
Confidence 5799999999999999999998 699999976
No 449
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=79.26 E-value=4.5 Score=45.89 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=27.4
Q ss_pred CcEEEEc-cCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 506 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 506 ~~VlivG-~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
++|+|.| +|.||..+++.|+..|. +++++|..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~------~V~~~~r~ 33 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE------EVRVLVRP 33 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC------EEEEEEec
Confidence 3699998 59999999999999986 78888754
No 450
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=79.25 E-value=5.1 Score=46.06 Aligned_cols=37 Identities=22% Similarity=0.413 Sum_probs=29.0
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
+++++|+|.|+ |+||..+++.|+..|-+ .+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~----~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNP----KKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCC----cEEEEEcCC
Confidence 35678999985 99999999999998720 378888744
No 451
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=79.16 E-value=7.8 Score=46.18 Aligned_cols=94 Identities=11% Similarity=0.008 Sum_probs=0.0
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
+..++|+|+|+|.+|.-+|+.+...|. +++++|.+.. |+..+.. .....
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~-------------------r~~~A~~-----------~G~~v 241 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPI-------------------RALEAAM-----------DGFRV 241 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChh-------------------hHHHHHh-----------cCCEe
Q ss_pred ccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecce
Q 001356 186 ELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGL 232 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~ 232 (1093)
.-.++.+...|+||.+..+......-.-.+.+.+ .-++.++-.+.
T Consensus 242 ~~leeal~~aDVVItaTG~~~vI~~~~~~~mK~G--ailiN~G~~~~ 286 (406)
T TIGR00936 242 MTMEEAAKIGDIFITATGNKDVIRGEHFENMKDG--AIVANIGHFDV 286 (406)
T ss_pred CCHHHHHhcCCEEEECCCCHHHHHHHHHhcCCCC--cEEEEECCCCc
No 452
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=79.15 E-value=4.4 Score=48.50 Aligned_cols=110 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred hhhhccCHHHH----HHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcc---cchHHH
Q 001356 93 RQLAVYGRETM----RRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDV---GKNRAL 165 (1093)
Q Consensus 93 RQi~l~G~~~q----~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~di---Gk~Ka~ 165 (1093)
+|-|+|+.+.. ..|++++|+|||+|..|..-|-||--+|+ ++++ -+++..| +++...
T Consensus 17 ~~~r~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGv-nVvv---------------glr~~~id~~~~s~~k 80 (487)
T PRK05225 17 GKCRFMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGL-DISY---------------ALRKEAIAEKRASWRK 80 (487)
T ss_pred ccceecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccc-eeEE---------------eccccccccccchHHH
Q ss_pred HHHHHHHHhCCCcEEEEeecccchhhhcCCceEEEecCCHHHHHHHHHHHHhcCCCcceEeeeecce
Q 001356 166 ASIQKLQELNNAVAISALTTELTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQPPIAFIKSEVRGL 232 (1093)
Q Consensus 166 a~~~~L~eLNp~V~V~~~~~~l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~~~ip~I~~~~~G~ 232 (1093)
+..+-+ .-.-.++.+...|+|+....+-.......++..... ---+..-+.||
T Consensus 81 A~~dGF------------~v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK--~Ga~L~fsHGF 133 (487)
T PRK05225 81 ATENGF------------KVGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMK--QGAALGYSHGF 133 (487)
T ss_pred HHhcCC------------ccCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCC--CCCEEEecCCc
No 453
>PRK06139 short chain dehydrogenase; Provisional
Probab=79.15 E-value=3.6 Score=47.63 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=29.9
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.+.+++|+|.|+ ||||.++++.|+..|. ++++++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~------~Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA------RLVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC------EEEEEEC
Confidence 356789999997 8999999999999997 7888763
No 454
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=79.14 E-value=7.9 Score=48.19 Aligned_cols=84 Identities=18% Similarity=0.251 Sum_probs=53.4
Q ss_pred cCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeeccc
Q 001356 108 ASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTEL 187 (1093)
Q Consensus 108 ~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~l 187 (1093)
+.||+|+|+|.+|.++++.|...|. .++++|.|.- |+ +++++.. +.+...+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~-------------------~~----~~~~~~g----~~~i~GD~ 468 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRT-------------------RV----DELRERG----IRAVLGNA 468 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHH-------------------HH----HHHHHCC----CeEEEcCC
Confidence 5799999999999999999999997 6888886431 22 2333322 23333333
Q ss_pred c-h-----hhhcCCceEEEecCCHHHHHHHHHHHHhcC
Q 001356 188 T-K-----EKLSDFQAVVFTDISLEKAVEFDDYCHNHQ 219 (1093)
Q Consensus 188 ~-~-----~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~ 219 (1093)
+ + .-++++|.|+.+..+.+....+-..+|+.+
T Consensus 469 ~~~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~ 506 (558)
T PRK10669 469 ANEEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKR 506 (558)
T ss_pred CCHHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHC
Confidence 2 2 245678878777654444434444456655
No 455
>PLN02688 pyrroline-5-carboxylate reductase
Probab=79.10 E-value=7.8 Score=43.15 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.9
Q ss_pred CcEEEEccCcchHHHHHHHHHccc
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGV 529 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv 529 (1093)
.||.+||+|.+|+.++++|...|.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~ 24 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGV 24 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC
Confidence 479999999999999999998874
No 456
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=79.10 E-value=3.7 Score=46.96 Aligned_cols=107 Identities=22% Similarity=0.336 Sum_probs=0.0
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCccc--------cccCCcccccccCccccchHHHHHHHHHHhC
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDVIE--------KSNLSRQFLFRDWNIGQAKSTVAASAAALIN 577 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie--------~sNLnRQflf~~~dvG~~Ka~va~~~l~~~n 577 (1093)
++|.|||+|-.|+-+|..+|..|+ .+++.|...-. ..+|.|+. .-|+-+.+.+...+.++.
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~------~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~ 72 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY------DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARIT 72 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC------ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhcc
Q ss_pred CCCEEEEEecccCccccccchhhhhccCCEEE-EccCCHHHHHHHhhcccccccc--eEeccccCc
Q 001356 578 PHLNTEALQIRANPETENVFNDTFWENLNVVV-NALDNVNARLYIDQRCLYFQKP--LLESGTLGA 640 (1093)
Q Consensus 578 p~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi-~alDn~~aR~~i~~~c~~~~~p--li~sgt~G~ 640 (1093)
|...+. -++.+|+|| ...-|.+.++.+-+..-.+-+| ++-|-|.+.
T Consensus 73 ~~~~~~-----------------~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl 121 (307)
T COG1250 73 PTTDLA-----------------ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSL 121 (307)
T ss_pred ccCchh-----------------HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCC
No 457
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=79.03 E-value=8 Score=43.97 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=60.9
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCC
Q 001356 502 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHL 580 (1093)
Q Consensus 502 ~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~ 580 (1093)
++. .=.+|.|+ .|||-++++-||+-|+ ++.||- | -+.|-++.++.+.+..+ +
T Consensus 47 ~~g-~WAVVTGaTDGIGKayA~eLAkrG~------nvvLIs---------------R----t~~KL~~v~kEI~~~~~-v 99 (312)
T KOG1014|consen 47 KLG-SWAVVTGATDGIGKAYARELAKRGF------NVVLIS---------------R----TQEKLEAVAKEIEEKYK-V 99 (312)
T ss_pred hcC-CEEEEECCCCcchHHHHHHHHHcCC------EEEEEe---------------C----CHHHHHHHHHHHHHHhC-c
Confidence 444 33555686 7999999999999999 688772 2 35788999999999998 9
Q ss_pred EEEEEecccCccccccch--hhhhccCC--EEEEcc
Q 001356 581 NTEALQIRANPETENVFN--DTFWENLN--VVVNAL 612 (1093)
Q Consensus 581 ~i~~~~~~v~~~~~~~~~--~~f~~~~D--vVi~al 612 (1093)
++..+..++....+ .|+ .+.+.+.| ++||++
T Consensus 100 ev~~i~~Dft~~~~-~ye~i~~~l~~~~VgILVNNv 134 (312)
T KOG1014|consen 100 EVRIIAIDFTKGDE-VYEKLLEKLAGLDVGILVNNV 134 (312)
T ss_pred EEEEEEEecCCCch-hHHHHHHHhcCCceEEEEecc
Confidence 99998888876554 332 23455666 566765
No 458
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=79.00 E-value=1.6 Score=50.49 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=32.2
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEec
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
.|.+++|+|||+|-+|..++++|...|+ ++|+|+.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~-----~~i~v~n 205 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGY-----SRITFCS 205 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCC-----CEEEEEc
Confidence 4788999999999999999999999999 8899873
No 459
>PRK00811 spermidine synthase; Provisional
Probab=78.99 E-value=4.9 Score=45.54 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=33.3
Q ss_pred chhhhhhhhhhhccCHHHHHHhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCc
Q 001356 85 DIDEDLHSRQLAVYGRETMRRLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 85 ~~~~~~YsRQi~l~G~~~q~kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
+.++-.|.+.+.-...-.. -...+||++|+|+ |.-....|-..|+.+|+++|-|.
T Consensus 56 ~~de~~Y~e~l~h~~~~~~--~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 56 ERDEFIYHEMMTHVPLFAH--PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CcchhhHHHHhhhHHHhhC--CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence 3445577765543332221 2357899999975 33333333446899999998654
No 460
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=78.88 E-value=4.1 Score=49.08 Aligned_cols=106 Identities=16% Similarity=0.148 Sum_probs=71.9
Q ss_pred eEEEEcCChhH-HHHHHHHHH----hCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHH-HHHHhCCCcEEEEe
Q 001356 110 NILISGMQGLG-AEIAKNLIL----AGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQ-KLQELNNAVAISAL 183 (1093)
Q Consensus 110 ~VlIiG~gglG-seiaKnLvl----aGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~-~L~eLNp~V~V~~~ 183 (1093)
+|.|||+|+.= -++++.|+. .++++|+|+|-|.- -| .....+++ ...+.++.++|+..
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~---rl-------------~~v~~l~~~~~~~~g~~~~v~~T 65 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAE---RQ-------------EKVAEAVKILFKENYPEIKFVYT 65 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHH---HH-------------HHHHHHHHHHHHhhCCCeEEEEE
Confidence 79999999963 366666663 46789999996541 11 01233333 34566667777775
Q ss_pred ecccchhhhcCCceEEEecC--CHHHHHHHHHHHHhcCCCcceEeeeecceeEEEE
Q 001356 184 TTELTKEKLSDFQAVVFTDI--SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIF 237 (1093)
Q Consensus 184 ~~~l~~~~l~~~dvVV~~~~--~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf 237 (1093)
++ -.+-+++.|+||.+.. ..+.+..=.+++.++| + +...+.|..|..+
T Consensus 66 td--r~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyG--i--~gqET~G~GG~~~ 115 (437)
T cd05298 66 TD--PEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHG--V--VGQETCGPGGFAY 115 (437)
T ss_pred CC--HHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcC--c--ceecCccHHHHHH
Confidence 54 3467889999998864 5566776678999999 4 5557888888544
No 461
>PRK08291 ectoine utilization protein EutC; Validated
Probab=78.82 E-value=5.8 Score=45.96 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=78.1
Q ss_pred cCccCchhhhhccchhHHHHHhhccC------ccccc--ceeeccCCCCCCCCCCCCCCCCCccCcchhhhhc--cCHHH
Q 001356 430 RAVLNPMAAMFGGIVGQEVVKACSGK------FHPLL--QFFYFDSVESLPSEPLDPRDLQPLNSRYDAQISV--FGSKL 499 (1093)
Q Consensus 430 ~~el~PvaA~iGGiaAQEVIKaiTgk------f~PI~--q~~~fD~~e~lp~~~~~~~~~~~~~~Rydrqi~l--~G~~~ 499 (1093)
.+.++.|.++++|.-. -.+|.++.- -.|-. -.++||.-.+.|..-+. + +.+.. ..|. .|--.
T Consensus 52 ~~~~~~mp~~~~~~~~-~g~K~~~~~~~N~~~glp~~~g~i~l~d~~tG~~~ai~~-d-----~~~lt-~~rT~a~~~~a 123 (330)
T PRK08291 52 RGEVDVKTAYIPGLDS-FAIKVSPGFFDNPKLGLPSLNGLMVVLSARTGLVEALLL-D-----NGYLT-DVRTAAAGAVA 123 (330)
T ss_pred CCcEEEeecccCCCCe-eEEEeccCCCCccccCCCcceEEEEEEeCCCCceEEEEc-C-----CchHH-HHHHHHHHHHH
Confidence 3467777888776311 237877642 22322 24557765554432110 0 01111 1111 11112
Q ss_pred HHHH---hcCcEEEEccCcchHHHHHHHHH-cccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHH
Q 001356 500 QKKL---EEAKVFVVGSGALGCEFLKNLAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAAL 575 (1093)
Q Consensus 500 q~~L---~~~~VlivG~GgiG~e~lknLa~-~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~ 575 (1093)
-..| ..++++|+|+|+.|...+..|+. .|+ .+++|++. ...|++.+++.+++
T Consensus 124 ~~~la~~~~~~v~IiGaG~~a~~~~~al~~~~~~-----~~V~v~~R-------------------~~~~a~~l~~~~~~ 179 (330)
T PRK08291 124 ARHLAREDASRAAVIGAGEQARLQLEALTLVRPI-----REVRVWAR-------------------DAAKAEAYAADLRA 179 (330)
T ss_pred HHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCC-----CEEEEEcC-------------------CHHHHHHHHHHHhh
Confidence 2223 24689999999999999999985 567 78888752 23466677776654
Q ss_pred hCCCCEEEEEecccCccccccchhhhhccCCEEEEccCC
Q 001356 576 INPHLNTEALQIRANPETENVFNDTFWENLNVVVNALDN 614 (1093)
Q Consensus 576 ~np~~~i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn 614 (1093)
.. .+++..+.. . .+.+.++|+||+|+-.
T Consensus 180 ~~-g~~v~~~~d-----~-----~~al~~aDiVi~aT~s 207 (330)
T PRK08291 180 EL-GIPVTVARD-----V-----HEAVAGADIIVTTTPS 207 (330)
T ss_pred cc-CceEEEeCC-----H-----HHHHccCCEEEEeeCC
Confidence 32 234333221 1 2345789999999854
No 462
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=78.74 E-value=1.5 Score=48.72 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=36.4
Q ss_pred HHHhcCcEEEEccCcchHHHHHHHHHcccccCC-----CcceEEecCCcc
Q 001356 501 KKLEEAKVFVVGSGALGCEFLKNLALMGVSCGN-----QGKLTITDDDVI 545 (1093)
Q Consensus 501 ~~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~-----~g~i~liD~D~I 545 (1093)
++|.+.||+++|+|+-|.-+++.|...|+..|- ..+|.++|.+-+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl 70 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL 70 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence 468889999999999999999999999982110 139999997654
No 463
>PRK05875 short chain dehydrogenase; Provisional
Probab=78.65 E-value=9.2 Score=42.38 Aligned_cols=34 Identities=26% Similarity=0.502 Sum_probs=29.5
Q ss_pred hhcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeC
Q 001356 106 LFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 106 L~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
|++++|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r 39 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR 39 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence 66789999996 7899999999999998 6777764
No 464
>PRK06720 hypothetical protein; Provisional
Probab=78.62 E-value=5.1 Score=41.81 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=29.7
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
+.++.++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~------~V~l~~r~ 49 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGA------KVIVTDID 49 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCC------EEEEEECC
Confidence 67788999996 5799999999999986 78888854
No 465
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.56 E-value=6.3 Score=47.37 Aligned_cols=122 Identities=17% Similarity=0.198 Sum_probs=70.4
Q ss_pred hhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 106 LFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 106 L~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
+.+++|+|+|.|+.|..+++.|...|. +++..|...- . .. ...|. ..+.+ ...
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~~~------------~-----~~----~~~l~---~g~~~--~~~ 56 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTRIT------------P-----PG----LDKLP---ENVER--HTG 56 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCCC------------c-----hh----HHHHh---cCCEE--EeC
Confidence 456789999999999999999999997 7888885320 0 00 11232 13444 233
Q ss_pred ccchhhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEeeeecceeEEEEeecCCceEEecCCCCCCccceeccc
Q 001356 186 ELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGLFGNIFCDFGPEFTVFDVDGEEPHTGIIASI 262 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~~~~~G~~G~vf~d~g~~f~v~d~~ge~p~~~~i~~I 262 (1093)
..+...+..+|+||.... +.. ...-..+++.+ +|++.-. -+.+.++ + .+-..|.=++|...++.++..|
T Consensus 57 ~~~~~~~~~~d~vv~spgi~~~--~~~~~~a~~~g--~~v~~~~--el~~~~~-~-~~~I~VTGTnGKTTTt~ll~~i 126 (438)
T PRK03806 57 SLNDEWLLAADLIVASPGIALA--HPSLSAAADAG--IEIVGDI--ELFCREA-Q-APIVAITGSNGKSTVTTLVGEM 126 (438)
T ss_pred CCCHHHhcCCCEEEECCCCCCC--CHHHHHHHHCC--CeEEEHH--HHHhhhc-C-CCEEEEeCCCCHHHHHHHHHHH
Confidence 333455678899888764 222 22344568889 8855421 1222222 1 1234455556665555555544
No 466
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=78.52 E-value=1.7 Score=52.09 Aligned_cols=35 Identities=40% Similarity=0.616 Sum_probs=31.9
Q ss_pred HhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
+.+.+|+|+|+|++|..+++.|...|+ .+++++|.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~-----~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGV-----RKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCC-----CeEEEEeC
Confidence 678999999999999999999999998 78998864
No 467
>PRK06181 short chain dehydrogenase; Provisional
Probab=78.44 E-value=6.3 Score=43.31 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=26.6
Q ss_pred CcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 506 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 506 ~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
++|+|.|+ |+||.++++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~------~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA------QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC------EEEEEeC
Confidence 57899996 9999999999998886 7888763
No 468
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=78.43 E-value=5.9 Score=45.86 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=28.5
Q ss_pred hhcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 106 LFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 106 L~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
+.+++|+|.|+ |.+|+++++.|+..|. +|+++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 35678999996 6699999999999995 57777654
No 469
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.43 E-value=5 Score=44.21 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=29.4
Q ss_pred HHhcCcEEEEccC---cchHHHHHHHHHcccccCCCcceEEec
Q 001356 502 KLEEAKVFVVGSG---ALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 502 ~L~~~~VlivG~G---giG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
+|.+++|+|.|++ |||.++++.|+..|. ++++++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~------~vi~~~ 39 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGA------DIFFTY 39 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCC------eEEEEe
Confidence 5778999999984 899999999999997 677765
No 470
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=78.40 E-value=20 Score=41.59 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=25.9
Q ss_pred hcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeC
Q 001356 107 FASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 107 ~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
++.+|||.|. |.+|+.+++.|+..|. ++++++.
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r 42 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLR 42 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 3568999995 6799999999999986 4555443
No 471
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=78.30 E-value=7.1 Score=44.47 Aligned_cols=82 Identities=16% Similarity=0.060 Sum_probs=52.1
Q ss_pred hcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeecc
Q 001356 107 FASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTTE 186 (1093)
Q Consensus 107 ~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~~ 186 (1093)
+..+|+|+|+|++|...+..+...|+..+.++|.+.- |.+.+. ...-+|+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~-------------------rl~~a~-~~~~i~~~--------- 194 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPR-------------------RRDGAT-GYEVLDPE--------- 194 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH-------------------HHHhhh-hccccChh---------
Confidence 4568999999999999998888899988877764211 111111 01011110
Q ss_pred cchhhhcCCceEEEecCCHHHHHHHHHHHHhcC
Q 001356 187 LTKEKLSDFQAVVFTDISLEKAVEFDDYCHNHQ 219 (1093)
Q Consensus 187 l~~~~l~~~dvVV~~~~~~~~~~~ln~~c~~~~ 219 (1093)
.+.-..+|+|+.|..........-+.++..|
T Consensus 195 --~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~G 225 (308)
T TIGR01202 195 --KDPRRDYRAIYDASGDPSLIDTLVRRLAKGG 225 (308)
T ss_pred --hccCCCCCEEEECCCCHHHHHHHHHhhhcCc
Confidence 0011368999999987665555566777777
No 472
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=78.22 E-value=4.2 Score=49.25 Aligned_cols=88 Identities=22% Similarity=0.251 Sum_probs=56.6
Q ss_pred hcCeEEEEcCChhHHH-HHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 107 FASNILISGMQGLGAE-IAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 107 ~~s~VlIiG~gglGse-iaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
+.++|+|+|+|+.|.. +|+.|...|. ++++.|.... . . .+.|.+. .+.+. ..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~-------------------~--~-~~~l~~~--gi~~~--~~ 58 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKES-------------------A--V-TQRLLEL--GAIIF--IG 58 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCC-------------------h--H-HHHHHHC--CCEEe--CC
Confidence 4568999999999999 7999999997 4777775321 0 0 1235443 34443 22
Q ss_pred ccchhhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEe
Q 001356 186 ELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIK 226 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~ 226 (1093)
. .++.+.++|+||.+.. +... ..-..+++++ +|++.
T Consensus 59 ~-~~~~~~~~d~vv~spgi~~~~--~~~~~a~~~~--i~i~~ 95 (461)
T PRK00421 59 H-DAENIKDADVVVYSSAIPDDN--PELVAARELG--IPVVR 95 (461)
T ss_pred C-CHHHCCCCCEEEECCCCCCCC--HHHHHHHHCC--CcEEe
Confidence 2 4456778999998764 2221 1234567888 88875
No 473
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=78.21 E-value=2.6 Score=52.03 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=31.4
Q ss_pred HHhcCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 502 KLEEAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 502 ~L~~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
.|.+++|.|||.|.||.++++.|...|+ +++.+|.
T Consensus 135 ~l~gktvgIiG~G~IG~~vA~~l~~fG~------~V~~~d~ 169 (525)
T TIGR01327 135 ELYGKTLGVIGLGRIGSIVAKRAKAFGM------KVLAYDP 169 (525)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC------EEEEECC
Confidence 5888999999999999999999998887 7888874
No 474
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=78.20 E-value=2.6 Score=47.83 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=31.9
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeC
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
.|..++|+|+|+|++|..+|+.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5678999999999999999999999997 8888875
No 475
>PRK12827 short chain dehydrogenase; Provisional
Probab=78.11 E-value=5.1 Score=43.34 Aligned_cols=33 Identities=33% Similarity=0.579 Sum_probs=28.7
Q ss_pred HhcCcEEEEc-cCcchHHHHHHHHHcccccCCCcceEEec
Q 001356 503 LEEAKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 503 L~~~~VlivG-~GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
+.+++|+|.| .|+||.++++.|+..|. ++++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~------~v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA------DVIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC------eEEEEc
Confidence 4568899999 59999999999999997 788877
No 476
>PRK07814 short chain dehydrogenase; Provisional
Probab=78.10 E-value=4.6 Score=44.63 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=29.7
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
+.+++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~------~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA------DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC------EEEEEeCC
Confidence 56788999995 6899999999999987 78888754
No 477
>PRK07340 ornithine cyclodeaminase; Validated
Probab=78.07 E-value=4.2 Score=46.60 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=52.3
Q ss_pred HhcCcEEEEccCcchHHHHHHHHH-cccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCE
Q 001356 503 LEEAKVFVVGSGALGCEFLKNLAL-MGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLN 581 (1093)
Q Consensus 503 L~~~~VlivG~GgiG~e~lknLa~-~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~ 581 (1093)
....+|+|+|+|+.|...++.|.. .|+ .++.|.|.+ ..|++..++.+...+. .
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~-----~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~ 176 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPV-----RRVWVRGRT-------------------AASAAAFCAHARALGP--T 176 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCC-----CEEEEEcCC-------------------HHHHHHHHHHHHhcCC--e
Confidence 356899999999999999999975 576 678877532 4577777877765432 2
Q ss_pred EEEEecccCccccccchhhhhccCCEEEEccCC
Q 001356 582 TEALQIRANPETENVFNDTFWENLNVVVNALDN 614 (1093)
Q Consensus 582 i~~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn 614 (1093)
+. . . +. .+...++|+||.|+-.
T Consensus 177 ~~-~----~-~~-----~~av~~aDiVitaT~s 198 (304)
T PRK07340 177 AE-P----L-DG-----EAIPEAVDLVVTATTS 198 (304)
T ss_pred eE-E----C-CH-----HHHhhcCCEEEEccCC
Confidence 22 1 1 11 2345799999999854
No 478
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=78.07 E-value=2.1 Score=54.68 Aligned_cols=170 Identities=14% Similarity=0.117 Sum_probs=86.0
Q ss_pred CcEEEEccCcchHHHHHHHH-HcccccCCCcceEEecCCccccccCCcccccccCccccchHHHHHHHHHHhCC--CCEE
Q 001356 506 AKVFVVGSGALGCEFLKNLA-LMGVSCGNQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINP--HLNT 582 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa-~~Gv~~~~~g~i~liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np--~~~i 582 (1093)
++|.|||+|-.|+.++-.++ +.|+ .++++|.+.= .|.| ++..+.-..+.+.+... ....
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~------~V~l~d~~~~---~l~~---------~~~~~~~~l~~~~~~~~~~~~~~ 371 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL------PVRIKDINPQ---GINH---------ALKYSWDLLDKKVKRRHLKPSER 371 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC------eEEEEeCCHH---HHHH---------HHHHHHHHHHHHHHcCCCCHHHH
Confidence 57999999999999999999 8898 9999996531 1111 11111111111111000 0000
Q ss_pred EEEecccCccccccchhhhhccCCEEEEc-cCCHHHHHHHhhccccccc--ceEeccccCcccc-eEEEeCCcccccCcC
Q 001356 583 EALQIRANPETENVFNDTFWENLNVVVNA-LDNVNARLYIDQRCLYFQK--PLLESGTLGAKCN-TQMVIPHLTENYGAS 658 (1093)
Q Consensus 583 ~~~~~~v~~~~~~~~~~~f~~~~DvVi~a-lDn~~aR~~i~~~c~~~~~--pli~sgt~G~~G~-v~v~ip~~t~~y~~~ 658 (1093)
.....++...+. + +-++++|+||.| ..+.+.++.+-...-..-. .++-+-|.+.--. ..-.+.+...+.+.+
T Consensus 372 ~~~~~~i~~~~~--~--~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~H 447 (708)
T PRK11154 372 DKQMALISGTTD--Y--RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLH 447 (708)
T ss_pred HHHHhcEEEeCC--h--HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEe
Confidence 000001111111 1 235789999977 4667777655544433322 3554444442111 000111111222222
Q ss_pred CCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhccChh
Q 001356 659 RDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPA 698 (1093)
Q Consensus 659 ~~p~~~~~p~Ct~~~~P~~~~hci~wA~~~f~~~f~~~~~ 698 (1093)
.-.|....|++-+-.-|.....++.++..++.. .+..|-
T Consensus 448 ff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~-~gk~pv 486 (708)
T PRK11154 448 YFSPVEKMPLVEVIPHAKTSAETIATTVALAKK-QGKTPI 486 (708)
T ss_pred cCCccccCceEEEECCCCCCHHHHHHHHHHHHH-cCCceE
Confidence 222333456666667788888899998887754 355544
No 479
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.05 E-value=2 Score=48.67 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=29.9
Q ss_pred cCcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 505 EAKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 505 ~~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
.++|.|||+|.+|..++.+|+..|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~------~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY------DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC------eEEEEeCC
Confidence 3689999999999999999999998 89999864
No 480
>PRK06398 aldose dehydrogenase; Validated
Probab=78.03 E-value=4.9 Score=44.33 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=30.7
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 502 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 502 ~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
.|++++++|.|+ ||||.++++.|+..|. ++++++.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~------~Vi~~~r~ 39 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS------NVINFDIK 39 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC------eEEEEeCC
Confidence 356789999995 8999999999999997 78888754
No 481
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=78.03 E-value=5.2 Score=46.72 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=57.3
Q ss_pred CcEEEEcc-CcchHHHHHHHHHcccccCCCcceE-EecCCccccccCCcccccccCccccchHHHHHHHHHHhCCCCEEE
Q 001356 506 AKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLT-ITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAAALINPHLNTE 583 (1093)
Q Consensus 506 ~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~-liD~D~Ie~sNLnRQflf~~~dvG~~Ka~va~~~l~~~np~~~i~ 583 (1093)
.||+|+|+ |.+|.++++.|...-. -+++ +++.+. ..|+. +...+|++...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~-----~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~ 52 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE-----VEITYLVSSRE---------------SAGKP--------VSEVHPHLRGL 52 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC-----ceEEEEeccch---------------hcCCC--------hHHhCcccccc
Confidence 37999999 9999999999986522 3555 545331 12211 11123322110
Q ss_pred EEecccCccccccchhhhhccCCEEEEccCCHHHHHHHhhcccccccceEeccc
Q 001356 584 ALQIRANPETENVFNDTFWENLNVVVNALDNVNARLYIDQRCLYFQKPLLESGT 637 (1093)
Q Consensus 584 ~~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~i~~~c~~~~~pli~sgt 637 (1093)
. ...+.+.+ ..++.++.|+||.|+.+-.++.++..+. ..++.+|+.++
T Consensus 53 ~-~~~~~~~~----~~~~~~~~DvVf~alP~~~s~~~~~~~~-~~G~~VIDlS~ 100 (346)
T TIGR01850 53 V-DLNLEPID----EEEIAEDADVVFLALPHGVSAELAPELL-AAGVKVIDLSA 100 (346)
T ss_pred C-CceeecCC----HHHhhcCCCEEEECCCchHHHHHHHHHH-hCCCEEEeCCh
Confidence 0 00111100 0234458999999999999988888653 46788886443
No 482
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=78.00 E-value=1.8 Score=47.97 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=36.3
Q ss_pred HHhhcCeEEEEcCChhHHHHHHHHHHhCCc----------eEEEEeCCcc
Q 001356 104 RRLFASNILISGMQGLGAEIAKNLILAGVK----------SVTLHDEGVV 143 (1093)
Q Consensus 104 ~kL~~s~VlIiG~gglGseiaKnLvlaGVg----------~itLvD~d~V 143 (1093)
++|.+.+|+++|+|+.|.-||+.|+.+|++ +|.++|..=+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl 70 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL 70 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence 478899999999999999999999999998 8999997643
No 483
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=77.98 E-value=2 Score=51.48 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=29.2
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
.+|+|||+|-.|||.|..|++.|+ +++|+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~------~V~LiE~r 32 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV------PVILYEMR 32 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC------cEEEEecc
Confidence 379999999999999999999998 99999864
No 484
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=77.90 E-value=7.6 Score=43.62 Aligned_cols=118 Identities=20% Similarity=0.162 Sum_probs=60.7
Q ss_pred CeEEEEc-CChhHHHHHHHHHH-hCCceEEEEeC-Ccce-eeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEee
Q 001356 109 SNILISG-MQGLGAEIAKNLIL-AGVKSVTLHDE-GVVE-LWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALT 184 (1093)
Q Consensus 109 s~VlIiG-~gglGseiaKnLvl-aGVg~itLvD~-d~V~-~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~ 184 (1093)
.+|.|+| +|..|..+++.+.. .++.=+.++|. +.-. ..+++.. ......|-+-.. -.+.+ ...++|-|.+..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~--~~~~~~gv~~~~-d~~~l-~~~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGEL--AGIGKVGVPVTD-DLEAV-ETDPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHh--cCcCcCCceeeC-CHHHh-cCCCCEEEECCC
Confidence 3799999 59999999999885 67777777873 2211 0111110 000001100000 01122 122444444322
Q ss_pred cccchh-----hhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEeeeecce
Q 001356 185 TELTKE-----KLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGL 232 (1093)
Q Consensus 185 ~~l~~~-----~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~~~~~G~ 232 (1093)
-....+ .=.+..+|+.++. +.+....|.++|++.+ +|++.+..+.+
T Consensus 78 p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g--~~v~~a~NfSl 129 (266)
T TIGR00036 78 PEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAG--IAAVIAPNFSI 129 (266)
T ss_pred hHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCC--ccEEEECcccH
Confidence 111111 1224577776653 5566777778888877 77777655544
No 485
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=77.71 E-value=6 Score=43.59 Aligned_cols=34 Identities=18% Similarity=0.385 Sum_probs=28.8
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEec
Q 001356 502 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 502 ~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
.|++++++|.|+ ||||.++++.|+..|. ++++++
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~------~v~~~~ 39 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGV------NIAFTY 39 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC------EEEEEc
Confidence 467889999985 9999999999999998 666653
No 486
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=77.70 E-value=2.1 Score=48.57 Aligned_cols=33 Identities=33% Similarity=0.402 Sum_probs=29.9
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEecCCc
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITDDDV 544 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D~ 544 (1093)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~------~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY------DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC------eEEEEeCCH
Confidence 579999999999999999999998 899998654
No 487
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=77.69 E-value=2.8 Score=48.60 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=34.5
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCc
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVKSVTLHDEGV 142 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~ 142 (1093)
.|.+++|||||+|-.|.-++++|...|+++|++.....
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 47889999999999999999999999999999986543
No 488
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=77.62 E-value=2.3 Score=47.97 Aligned_cols=31 Identities=26% Similarity=0.208 Sum_probs=29.3
Q ss_pred CcEEEEccCcchHHHHHHHHHcccccCCCcceEEec
Q 001356 506 AKVFVVGSGALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 506 ~~VlivG~GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
++|+|+|+||.+..++-.|+..|+ .+|+|++
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~-----~~i~i~n 153 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGF-----TDGTIVA 153 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCC-----CEEEEEe
Confidence 589999999999999999999999 8999986
No 489
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=77.59 E-value=4.6 Score=44.61 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=29.1
Q ss_pred HHhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEec
Q 001356 502 KLEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITD 541 (1093)
Q Consensus 502 ~L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD 541 (1093)
++.+++++|.|+ |+||.++++.|+..|. +++++|
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~------~vv~~~ 41 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGA------TIVFND 41 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC------eEEEEe
Confidence 457788999985 8999999999999997 677775
No 490
>PRK08278 short chain dehydrogenase; Provisional
Probab=77.57 E-value=5.6 Score=44.37 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=29.8
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
+.+++++|.|+ |+||.++++.|+..|. ++++++.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~------~V~~~~r~ 39 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA------NIVIAAKT 39 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC------EEEEEecc
Confidence 45678999995 9999999999999997 78888744
No 491
>PRK06046 alanine dehydrogenase; Validated
Probab=77.56 E-value=9.3 Score=44.21 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=53.4
Q ss_pred hcCeEEEEcCChhHHHHHHHHH-HhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEEeec
Q 001356 107 FASNILISGMQGLGAEIAKNLI-LAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISALTT 185 (1093)
Q Consensus 107 ~~s~VlIiG~gglGseiaKnLv-laGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~~~~ 185 (1093)
...+|.|+|+|+.|...+.+|. ..+++.+.++|.+ ..+++..++++++..+ +.+....
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~-------------------~~~~~~~~~~~~~~~~-~~v~~~~- 186 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT-------------------KSSAEKFVERMSSVVG-CDVTVAE- 186 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEeC-
Confidence 3578999999999999999987 5689999998853 3466677777765433 4444433
Q ss_pred ccchhhhcCCceEEEecCC
Q 001356 186 ELTKEKLSDFQAVVFTDIS 204 (1093)
Q Consensus 186 ~l~~~~l~~~dvVV~~~~~ 204 (1093)
++ ++.+. .|+|+.|+.+
T Consensus 187 ~~-~~~l~-aDiVv~aTps 203 (326)
T PRK06046 187 DI-EEACD-CDILVTTTPS 203 (326)
T ss_pred CH-HHHhh-CCEEEEecCC
Confidence 22 34455 8999998855
No 492
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=77.54 E-value=8 Score=43.44 Aligned_cols=32 Identities=19% Similarity=0.493 Sum_probs=25.0
Q ss_pred cEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecC
Q 001356 507 KVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDD 542 (1093)
Q Consensus 507 ~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~ 542 (1093)
+|+|.|+ |.||.++++.|...|- .-+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~----~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHP----DAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC----CCEEEEecC
Confidence 5899995 9999999999998872 026777653
No 493
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.44 E-value=4 Score=46.28 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=32.0
Q ss_pred HhhcCeEEEEcCCh-hHHHHHHHHHHhCCceEEEEeC
Q 001356 105 RLFASNILISGMQG-LGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 105 kL~~s~VlIiG~gg-lGseiaKnLvlaGVg~itLvD~ 140 (1093)
.++.++|+|+|.|+ +|..++..|...|. .+|+++.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 46788999999999 99999999999999 9999874
No 494
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=77.43 E-value=4.7 Score=43.75 Aligned_cols=35 Identities=26% Similarity=0.464 Sum_probs=29.2
Q ss_pred HhcCcEEEEcc-CcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 503 LEEAKVFVVGS-GALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 503 L~~~~VlivG~-GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
|++++++|.|+ |+||.++++.|+..|. +++++|.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~------~v~~~~r~ 36 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA------KVAVFDLN 36 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC------EEEEecCC
Confidence 45788999995 9999999999999987 77777643
No 495
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=77.40 E-value=5.6 Score=46.92 Aligned_cols=32 Identities=41% Similarity=0.637 Sum_probs=29.0
Q ss_pred CcEEEEc-cCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 506 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 506 ~~VlivG-~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
.+|+||| +|.+|..+++.|...|. .++++|.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~------~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY------QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC------eEEEeCCC
Confidence 5899998 99999999999999997 78999864
No 496
>PRK07102 short chain dehydrogenase; Provisional
Probab=77.34 E-value=8.1 Score=41.97 Aligned_cols=32 Identities=19% Similarity=0.458 Sum_probs=27.4
Q ss_pred CcEEEEc-cCcchHHHHHHHHHcccccCCCcceEEecCC
Q 001356 506 AKVFVVG-SGALGCEFLKNLALMGVSCGNQGKLTITDDD 543 (1093)
Q Consensus 506 ~~VlivG-~GgiG~e~lknLa~~Gv~~~~~g~i~liD~D 543 (1093)
++|+|.| .|+||.++++.|+..|. +++++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~------~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA------RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC------EEEEEeCC
Confidence 4789998 59999999999999987 78888743
No 497
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=77.27 E-value=6.7 Score=46.29 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=28.7
Q ss_pred CeEEEEc-CChhHHHHHHHHHHhCCceEEEEeCC
Q 001356 109 SNILISG-MQGLGAEIAKNLILAGVKSVTLHDEG 141 (1093)
Q Consensus 109 s~VlIiG-~gglGseiaKnLvlaGVg~itLvD~d 141 (1093)
.+|+||| +|.+|..+|+.|...|. .++++|.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 6899998 99999999999999994 69998863
No 498
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=77.23 E-value=9.5 Score=46.94 Aligned_cols=104 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHhCCceEEEEeCCcceeeCCCcceecccCcccchHHHHHHHHHHHhCCCcEEEE------
Q 001356 109 SNILISGMQGLGAEIAKNLILAGVKSVTLHDEGVVELWDLSSNFIFSEDDVGKNRALASIQKLQELNNAVAISA------ 182 (1093)
Q Consensus 109 s~VlIiG~gglGseiaKnLvlaGVg~itLvD~d~V~~sdL~rqf~~~~~diGk~Ka~a~~~~L~eLNp~V~V~~------ 182 (1093)
++|.|||+|..|..||.+|+.+|. .++++| +...+++.+.++++++-....=..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D-------------------~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~ 67 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYD-------------------ARAGAAAAARDGIAARLAKLVEKGKLTAEQ 67 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEe-------------------CCHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Q ss_pred -------eecccchhhhcCCceEEEecC-CHHHHHHHHHHHHhcCCCcceEeeeecce
Q 001356 183 -------LTTELTKEKLSDFQAVVFTDI-SLEKAVEFDDYCHNHQPPIAFIKSEVRGL 232 (1093)
Q Consensus 183 -------~~~~l~~~~l~~~dvVV~~~~-~~~~~~~ln~~c~~~~~~ip~I~~~~~G~ 232 (1093)
.....+.+-+.++|+||-+.. +.+.+..+-.-....-.+-.++.+.+..+
T Consensus 68 ~~~~~~~i~~~~~~~~~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl 125 (507)
T PRK08268 68 ADAALARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSL 125 (507)
T ss_pred HHHHHhCeEEeCCHHHhCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCC
No 499
>PRK13018 cell division protein FtsZ; Provisional
Probab=77.20 E-value=17 Score=43.04 Aligned_cols=107 Identities=14% Similarity=0.226 Sum_probs=0.0
Q ss_pred HhhcCeEEEEcCChhHHHHHHHHHHhCCc--eEEEEeCCc--ceeeCCCcceecccC-----------cccchHHHHHHH
Q 001356 105 RLFASNILISGMQGLGAEIAKNLILAGVK--SVTLHDEGV--VELWDLSSNFIFSED-----------DVGKNRALASIQ 169 (1093)
Q Consensus 105 kL~~s~VlIiG~gglGseiaKnLvlaGVg--~itLvD~d~--V~~sdL~rqf~~~~~-----------diGk~Ka~a~~~ 169 (1093)
.....+|.|||+||-|+-++.+|+..|+. .+..++.|. ..........++.+. ++|+.-++...+
T Consensus 25 ~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L~~~~a~~ki~iG~~~t~G~GaG~dp~~G~~aaee~~d 104 (378)
T PRK13018 25 DFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHLAMIKADKKILIGKSLTRGLGAGGDPEVGRKAAEESRD 104 (378)
T ss_pred ccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcEEecCCccCCCCCCCCChHHHHHHHHHHHH
Q ss_pred HHHHhCCCcEEEEeecccchhhhcCCceEEEecC-----CHHHHHHHHHHHHhcCCCcceEeeeec
Q 001356 170 KLQELNNAVAISALTTELTKEKLSDFQAVVFTDI-----SLEKAVEFDDYCHNHQPPIAFIKSEVR 230 (1093)
Q Consensus 170 ~L~eLNp~V~V~~~~~~l~~~~l~~~dvVV~~~~-----~~~~~~~ln~~c~~~~~~ip~I~~~~~ 230 (1093)
.+++. ++++|.|+.+.. ---..-.|.+++++.+ ++.+..-+.
T Consensus 105 ~I~~~-----------------le~~D~vfI~aGLGGGTGSGaapvIa~iake~g--~ltv~vVt~ 151 (378)
T PRK13018 105 EIKEV-----------------LKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQG--ALVVGVVTK 151 (378)
T ss_pred HHHHH-----------------hcCCCEEEEEeeccCcchhhHHHHHHHHHHHcC--CCeEEEEEc
No 500
>PRK07478 short chain dehydrogenase; Provisional
Probab=77.17 E-value=7.8 Score=42.38 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=28.7
Q ss_pred HhhcCeEEEEcC-ChhHHHHHHHHHHhCCceEEEEeC
Q 001356 105 RLFASNILISGM-QGLGAEIAKNLILAGVKSVTLHDE 140 (1093)
Q Consensus 105 kL~~s~VlIiG~-gglGseiaKnLvlaGVg~itLvD~ 140 (1093)
++.+++++|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r 38 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR 38 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 356778999985 6799999999999998 5777664
Done!