Query 001357
Match_columns 1093
No_of_seqs 1479 out of 5044
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 22:43:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001357.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001357hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2002 TPR-containing nuclear 100.0 4E-116 9E-121 978.5 97.4 999 1-1059 3-1017(1018)
2 TIGR02917 PEP_TPR_lipo putativ 100.0 4E-51 8.7E-56 526.8 85.1 699 32-798 151-885 (899)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-50 5.2E-55 519.6 86.6 717 21-798 37-784 (899)
4 KOG2002 TPR-containing nuclear 100.0 9.3E-45 2E-49 406.9 76.8 583 110-764 146-764 (1018)
5 PRK11447 cellulose synthase su 100.0 2.2E-42 4.8E-47 443.4 76.7 652 37-778 25-739 (1157)
6 PRK11447 cellulose synthase su 100.0 1.3E-41 2.9E-46 436.1 75.8 622 83-785 28-706 (1157)
7 KOG4626 O-linked N-acetylgluco 100.0 1.7E-43 3.7E-48 375.4 39.1 452 125-635 45-497 (966)
8 KOG4626 O-linked N-acetylgluco 100.0 1.5E-43 3.3E-48 375.8 38.0 453 107-617 61-514 (966)
9 PRK09782 bacteriophage N4 rece 100.0 7.8E-37 1.7E-41 372.0 69.8 663 41-797 45-724 (987)
10 PRK09782 bacteriophage N4 rece 100.0 1.5E-34 3.2E-39 352.1 67.1 649 26-793 64-753 (987)
11 PLN03077 Protein ECB2; Provisi 100.0 1.5E-34 3.2E-39 363.3 59.9 685 35-831 46-740 (857)
12 TIGR00990 3a0801s09 mitochondr 100.0 3.9E-31 8.5E-36 319.4 55.8 446 83-594 127-577 (615)
13 TIGR00990 3a0801s09 mitochondr 100.0 5E-31 1.1E-35 318.5 56.7 436 129-625 128-574 (615)
14 PLN03077 Protein ECB2; Provisi 100.0 3E-30 6.5E-35 324.4 65.4 641 25-779 69-720 (857)
15 KOG2076 RNA polymerase III tra 100.0 9.1E-29 2E-33 277.5 60.1 646 110-777 155-893 (895)
16 KOG0495 HAT repeat protein [RN 100.0 1.1E-26 2.3E-31 249.8 66.6 599 107-791 264-892 (913)
17 KOG2076 RNA polymerase III tra 100.0 3.7E-27 8E-32 264.6 61.1 634 40-741 139-893 (895)
18 KOG2376 Signal recognition par 100.0 6.3E-28 1.4E-32 258.1 36.8 566 275-953 19-613 (652)
19 KOG0495 HAT repeat protein [RN 100.0 2.6E-24 5.7E-29 231.5 62.9 596 35-744 280-881 (913)
20 PRK10049 pgaA outer membrane p 100.0 1.1E-26 2.5E-31 285.1 49.7 435 114-597 2-465 (765)
21 PRK15174 Vi polysaccharide exp 100.0 6.1E-26 1.3E-30 272.5 47.6 323 109-442 57-385 (656)
22 PRK10049 pgaA outer membrane p 100.0 1.3E-25 2.9E-30 275.7 48.7 409 87-562 19-464 (765)
23 PRK15174 Vi polysaccharide exp 100.0 1.1E-25 2.3E-30 270.4 46.0 337 306-707 43-384 (656)
24 PLN03218 maturation of RBCL 1; 100.0 6.9E-23 1.5E-27 252.1 66.5 420 113-589 356-784 (1060)
25 KOG0547 Translocase of outer m 100.0 1.4E-24 3E-29 227.0 42.2 425 163-705 116-567 (606)
26 PLN03218 maturation of RBCL 1; 100.0 1.7E-22 3.7E-27 248.6 67.7 545 144-779 353-909 (1060)
27 KOG0547 Translocase of outer m 99.9 9.7E-25 2.1E-29 228.1 36.7 428 130-624 117-568 (606)
28 KOG1127 TPR repeat-containing 99.9 9.6E-23 2.1E-27 229.4 53.8 644 109-792 473-1188(1238)
29 PLN03081 pentatricopeptide (PP 99.9 8.8E-25 1.9E-29 268.3 41.6 449 271-799 90-543 (697)
30 KOG2003 TPR repeat-containing 99.9 6.4E-24 1.4E-28 218.6 37.8 473 84-637 202-703 (840)
31 PLN03081 pentatricopeptide (PP 99.9 2.9E-23 6.4E-28 254.8 51.0 464 129-705 88-558 (697)
32 PRK14574 hmsH outer membrane p 99.9 2.3E-22 5E-27 240.8 54.0 469 121-627 27-518 (822)
33 KOG1127 TPR repeat-containing 99.9 6.2E-22 1.3E-26 223.0 53.1 653 56-790 474-1234(1238)
34 KOG2003 TPR repeat-containing 99.9 6.9E-24 1.5E-28 218.4 33.6 480 129-689 202-708 (840)
35 PRK14574 hmsH outer membrane p 99.9 2.3E-22 4.9E-27 240.8 51.4 440 108-596 48-521 (822)
36 KOG1173 Anaphase-promoting com 99.9 2.5E-22 5.5E-27 214.7 40.0 509 165-796 19-535 (611)
37 KOG1173 Anaphase-promoting com 99.9 3.4E-22 7.4E-27 213.7 39.9 458 107-625 29-521 (611)
38 KOG1156 N-terminal acetyltrans 99.9 2.9E-19 6.2E-24 194.3 54.1 444 129-619 8-465 (700)
39 KOG1126 DNA-binding cell divis 99.9 2.3E-22 5E-27 220.1 30.5 312 81-411 315-626 (638)
40 KOG1155 Anaphase-promoting com 99.9 7.9E-20 1.7E-24 190.6 47.4 446 41-557 79-539 (559)
41 KOG1155 Anaphase-promoting com 99.9 2.2E-20 4.8E-25 194.7 42.9 364 196-622 163-536 (559)
42 KOG0548 Molecular co-chaperone 99.9 6.9E-21 1.5E-25 203.4 37.6 259 345-700 227-485 (539)
43 KOG4162 Predicted calmodulin-b 99.9 2.4E-18 5.3E-23 190.9 58.7 414 313-789 292-793 (799)
44 KOG1915 Cell cycle control pro 99.9 1.4E-18 3.1E-23 181.1 51.3 482 115-685 60-550 (677)
45 PRK11788 tetratricopeptide rep 99.9 1.9E-20 4E-25 215.4 39.0 300 128-437 35-346 (389)
46 KOG1126 DNA-binding cell divis 99.9 1.2E-21 2.7E-26 214.5 26.8 292 140-480 331-623 (638)
47 PRK11788 tetratricopeptide rep 99.9 5.4E-20 1.2E-24 211.6 37.8 299 85-404 37-346 (389)
48 KOG0548 Molecular co-chaperone 99.9 1.2E-19 2.7E-24 193.9 37.1 435 107-618 15-485 (539)
49 KOG0624 dsRNA-activated protei 99.9 2.5E-19 5.5E-24 179.3 36.5 345 123-598 33-380 (504)
50 KOG4162 Predicted calmodulin-b 99.9 8.4E-19 1.8E-23 194.6 43.5 437 126-625 321-786 (799)
51 KOG1156 N-terminal acetyltrans 99.9 7.7E-17 1.7E-21 175.7 56.2 617 107-787 20-696 (700)
52 KOG0624 dsRNA-activated protei 99.9 2E-19 4.3E-24 180.0 31.2 323 82-418 37-383 (504)
53 KOG1174 Anaphase-promoting com 99.9 1E-17 2.3E-22 172.0 40.2 434 106-602 55-514 (564)
54 KOG1174 Anaphase-promoting com 99.9 3.5E-17 7.5E-22 168.2 41.3 314 311-688 202-518 (564)
55 KOG1915 Cell cycle control pro 99.8 5.3E-15 1.1E-19 154.8 52.9 466 91-621 74-584 (677)
56 KOG2047 mRNA splicing factor [ 99.8 1.4E-14 3.1E-19 157.1 57.3 667 35-772 22-716 (835)
57 TIGR00540 hemY_coli hemY prote 99.8 1.6E-16 3.6E-21 181.4 38.3 305 131-440 87-401 (409)
58 PF13429 TPR_15: Tetratricopep 99.8 3.7E-19 8E-24 193.3 14.7 265 452-779 12-277 (280)
59 KOG1129 TPR repeat-containing 99.8 6.1E-18 1.3E-22 168.5 20.8 275 136-418 187-471 (478)
60 KOG3785 Uncharacterized conser 99.8 2.6E-15 5.5E-20 151.4 39.4 375 175-620 35-420 (557)
61 KOG3785 Uncharacterized conser 99.8 2.3E-15 5E-20 151.7 38.3 450 207-783 32-494 (557)
62 PF13429 TPR_15: Tetratricopep 99.8 5.7E-19 1.2E-23 191.8 13.7 262 167-438 13-277 (280)
63 PRK12370 invasion protein regu 99.8 1E-16 2.2E-21 190.1 32.3 263 131-405 261-535 (553)
64 KOG1129 TPR repeat-containing 99.8 3.6E-18 7.8E-23 170.1 16.5 246 132-385 227-472 (478)
65 PRK12370 invasion protein regu 99.8 1.6E-16 3.6E-21 188.3 31.8 269 157-437 251-534 (553)
66 KOG2047 mRNA splicing factor [ 99.8 2.5E-12 5.5E-17 140.0 58.7 596 112-782 44-690 (835)
67 TIGR00540 hemY_coli hemY prote 99.8 4.4E-15 9.5E-20 169.7 40.1 290 107-405 97-399 (409)
68 KOG2376 Signal recognition par 99.8 3.4E-14 7.3E-19 153.6 43.5 457 106-615 24-513 (652)
69 PRK10747 putative protoheme IX 99.8 3.1E-15 6.6E-20 169.9 38.1 296 131-439 87-391 (398)
70 KOG1125 TPR repeat-containing 99.7 2.1E-16 4.5E-21 170.9 21.9 265 201-469 289-563 (579)
71 PRK10747 putative protoheme IX 99.7 1E-14 2.2E-19 165.6 35.9 297 165-477 87-390 (398)
72 PRK11189 lipoprotein NlpI; Pro 99.7 3.6E-15 7.9E-20 161.9 30.1 152 108-264 40-195 (296)
73 KOG1125 TPR repeat-containing 99.7 9.2E-16 2E-20 166.0 24.2 258 452-770 289-562 (579)
74 COG3063 PilF Tfp pilus assembl 99.7 4.7E-15 1E-19 142.4 25.5 209 197-412 35-243 (250)
75 PRK11189 lipoprotein NlpI; Pro 99.7 5E-15 1.1E-19 160.8 27.6 150 141-295 39-192 (296)
76 COG3063 PilF Tfp pilus assembl 99.7 8.4E-15 1.8E-19 140.8 24.8 209 343-597 36-245 (250)
77 KOG1840 Kinesin light chain [C 99.7 6.6E-14 1.4E-18 156.9 36.1 255 263-553 194-478 (508)
78 KOG0550 Molecular chaperone (D 99.7 2.2E-15 4.7E-20 155.8 22.1 274 106-408 61-353 (486)
79 KOG1840 Kinesin light chain [C 99.7 7.3E-14 1.6E-18 156.6 35.9 257 297-588 191-479 (508)
80 TIGR02521 type_IV_pilW type IV 99.7 2.5E-14 5.4E-19 151.6 28.4 202 197-405 31-232 (234)
81 KOG0550 Molecular chaperone (D 99.7 7.8E-15 1.7E-19 151.8 22.9 312 163-600 50-361 (486)
82 TIGR02521 type_IV_pilW type IV 99.7 2E-14 4.4E-19 152.3 27.4 197 83-294 31-229 (234)
83 COG2956 Predicted N-acetylgluc 99.7 6.3E-13 1.4E-17 133.6 35.5 300 131-476 38-346 (389)
84 COG2956 Predicted N-acetylgluc 99.7 4.5E-13 9.8E-18 134.6 31.9 285 251-586 52-345 (389)
85 PF12569 NARP1: NMDA receptor- 99.6 5.2E-12 1.1E-16 143.9 43.2 316 128-476 4-333 (517)
86 PLN02789 farnesyltranstransfer 99.6 2.5E-13 5.3E-18 146.5 28.5 212 140-388 49-267 (320)
87 cd05804 StaR_like StaR_like; a 99.6 1.7E-12 3.7E-17 147.2 37.0 205 124-333 2-214 (355)
88 PLN02789 farnesyltranstransfer 99.6 3.3E-13 7.1E-18 145.6 27.9 240 521-781 33-304 (320)
89 PF12569 NARP1: NMDA receptor- 99.6 4.6E-12 9.9E-17 144.4 37.7 327 448-838 4-392 (517)
90 cd05804 StaR_like StaR_like; a 99.6 2.2E-12 4.8E-17 146.2 34.8 306 82-404 5-335 (355)
91 KOG4340 Uncharacterized conser 99.6 2.9E-12 6.4E-17 126.7 26.4 421 139-630 21-451 (459)
92 KOG4340 Uncharacterized conser 99.6 1.3E-11 2.7E-16 122.3 30.6 288 106-401 22-335 (459)
93 TIGR03302 OM_YfiO outer membra 99.5 2.3E-12 4.9E-17 136.4 25.1 194 123-373 28-234 (235)
94 TIGR03302 OM_YfiO outer membra 99.5 3.1E-12 6.7E-17 135.3 24.7 193 158-407 29-234 (235)
95 PRK15359 type III secretion sy 99.5 7.3E-13 1.6E-17 126.4 16.1 128 113-244 12-139 (144)
96 PRK14720 transcript cleavage f 99.5 1.1E-08 2.4E-13 121.9 53.8 228 121-388 24-269 (906)
97 COG3071 HemY Uncharacterized e 99.5 5.3E-10 1.1E-14 116.8 36.3 298 132-439 88-391 (400)
98 KOG1130 Predicted G-alpha GTPa 99.4 3.7E-12 8.1E-17 131.4 17.2 298 275-609 24-371 (639)
99 KOG1130 Predicted G-alpha GTPa 99.4 1.7E-11 3.6E-16 126.6 18.9 157 321-477 171-344 (639)
100 PRK10370 formate-dependent nit 99.4 4.1E-11 8.9E-16 120.8 21.2 123 108-231 53-178 (198)
101 COG3071 HemY Uncharacterized e 99.4 2.6E-09 5.6E-14 111.7 34.1 295 167-477 89-390 (400)
102 PRK15359 type III secretion sy 99.4 9.7E-12 2.1E-16 118.7 15.0 125 148-279 13-137 (144)
103 PRK04841 transcriptional regul 99.4 1.2E-09 2.5E-14 140.4 38.3 388 306-746 342-763 (903)
104 PRK04841 transcriptional regul 99.3 4.5E-09 9.7E-14 135.0 42.1 345 131-478 377-761 (903)
105 PRK14720 transcript cleavage f 99.3 4E-11 8.6E-16 142.3 20.9 259 520-835 26-304 (906)
106 KOG3060 Uncharacterized conser 99.3 4.2E-10 9.2E-15 109.9 23.6 211 51-276 23-233 (289)
107 KOG3617 WD40 and TPR repeat-co 99.3 3E-08 6.5E-13 111.2 39.7 547 128-783 757-1363(1416)
108 COG5010 TadD Flp pilus assembl 99.3 2.3E-10 4.9E-15 113.5 20.0 178 112-294 51-228 (257)
109 PRK10370 formate-dependent nit 99.3 1.1E-10 2.5E-15 117.6 18.5 124 655-785 53-179 (198)
110 KOG3060 Uncharacterized conser 99.3 1.2E-09 2.6E-14 106.8 24.4 209 423-685 26-235 (289)
111 KOG1128 Uncharacterized conser 99.3 1.6E-10 3.5E-15 128.8 20.5 218 42-298 400-617 (777)
112 KOG2053 Mitochondrial inherita 99.3 1.1E-06 2.3E-11 101.2 50.7 101 655-761 453-553 (932)
113 TIGR02552 LcrH_SycD type III s 99.3 9.6E-11 2.1E-15 111.8 15.8 119 115-234 4-122 (135)
114 KOG1128 Uncharacterized conser 99.3 2.2E-09 4.8E-14 120.0 27.0 223 338-623 394-617 (777)
115 COG5010 TadD Flp pilus assembl 99.2 1.2E-09 2.7E-14 108.3 21.5 180 145-332 50-229 (257)
116 PRK15179 Vi polysaccharide bio 99.2 7.1E-10 1.5E-14 131.6 23.4 155 112-270 70-224 (694)
117 KOG3617 WD40 and TPR repeat-co 99.2 1.2E-05 2.5E-10 91.1 50.4 100 622-743 1074-1174(1416)
118 TIGR02552 LcrH_SycD type III s 99.2 6.1E-10 1.3E-14 106.2 15.3 119 149-271 4-122 (135)
119 PRK15363 pathogenicity island 99.2 6.6E-10 1.4E-14 103.1 13.8 107 121-228 27-134 (157)
120 KOG2053 Mitochondrial inherita 99.1 6E-06 1.3E-10 95.2 47.8 470 107-625 22-539 (932)
121 KOG0553 TPR repeat-containing 99.1 4.9E-10 1.1E-14 113.2 13.5 116 130-246 83-198 (304)
122 PRK15179 Vi polysaccharide bio 99.1 4.4E-09 9.5E-14 124.9 21.6 175 42-234 51-225 (694)
123 COG4783 Putative Zn-dependent 99.1 7E-09 1.5E-13 111.6 20.6 153 159-335 303-455 (484)
124 PRK10866 outer membrane biogen 99.1 4.2E-08 9.1E-13 102.3 25.3 204 126-368 30-238 (243)
125 PF04733 Coatomer_E: Coatomer 99.1 1.3E-09 2.9E-14 116.3 14.3 117 306-425 132-251 (290)
126 PF04733 Coatomer_E: Coatomer 99.1 2.1E-09 4.6E-14 114.8 15.3 260 135-413 8-273 (290)
127 COG4783 Putative Zn-dependent 99.0 6.1E-08 1.3E-12 104.5 25.1 153 193-372 303-455 (484)
128 PRK10866 outer membrane biogen 99.0 7.5E-08 1.6E-12 100.4 24.9 201 160-402 30-238 (243)
129 PF13525 YfiO: Outer membrane 99.0 2.9E-08 6.3E-13 101.2 21.0 190 127-362 4-198 (203)
130 KOG0553 TPR repeat-containing 99.0 3.6E-09 7.8E-14 107.0 13.7 163 108-282 29-197 (304)
131 KOG2471 TPR repeat-containing 99.0 3.3E-07 7.1E-12 97.7 28.6 164 382-572 212-382 (696)
132 PLN03088 SGT1, suppressor of 99.0 7.3E-09 1.6E-13 115.2 16.8 113 131-244 5-117 (356)
133 PF13525 YfiO: Outer membrane 99.0 1.2E-07 2.7E-12 96.6 23.1 187 161-396 4-198 (203)
134 KOG1914 mRNA cleavage and poly 99.0 7.2E-05 1.6E-09 81.6 43.5 435 118-624 10-503 (656)
135 PRK15363 pathogenicity island 99.0 2.7E-08 5.9E-13 92.5 15.5 105 156-264 28-133 (157)
136 KOG3616 Selective LIM binding 98.9 4E-05 8.7E-10 85.6 42.2 330 102-476 452-819 (1636)
137 KOG2300 Uncharacterized conser 98.9 0.00014 3.1E-09 78.2 44.0 202 421-671 287-515 (629)
138 KOG1941 Acetylcholine receptor 98.9 3.2E-07 7E-12 94.2 22.8 304 278-618 16-356 (518)
139 TIGR02795 tol_pal_ybgF tol-pal 98.9 3.1E-08 6.8E-13 92.0 14.8 108 128-235 2-114 (119)
140 COG4785 NlpI Lipoprotein NlpI, 98.9 1.1E-07 2.5E-12 90.6 17.9 132 81-225 63-195 (297)
141 PLN03088 SGT1, suppressor of 98.9 4.3E-08 9.2E-13 109.1 16.3 112 165-280 5-116 (356)
142 KOG3616 Selective LIM binding 98.8 0.00026 5.7E-09 79.4 43.7 229 169-435 668-908 (1636)
143 KOG1914 mRNA cleavage and poly 98.8 0.00021 4.6E-09 78.2 41.9 430 221-745 10-503 (656)
144 KOG1070 rRNA processing protei 98.8 1.3E-06 2.8E-11 104.4 27.6 230 16-264 1434-1664(1710)
145 COG4235 Cytochrome c biogenesi 98.8 1.2E-07 2.7E-12 97.0 16.7 122 110-232 138-262 (287)
146 KOG1070 rRNA processing protei 98.8 2.7E-06 5.8E-11 101.8 28.6 234 178-420 1440-1680(1710)
147 KOG1941 Acetylcholine receptor 98.8 4.8E-06 1E-10 85.8 26.6 243 306-585 84-357 (518)
148 PRK15331 chaperone protein Sic 98.8 1E-07 2.2E-12 89.0 13.0 109 120-230 29-137 (165)
149 COG4785 NlpI Lipoprotein NlpI, 98.8 2.7E-07 5.9E-12 88.1 15.7 105 128-233 65-169 (297)
150 PRK02603 photosystem I assembl 98.8 2.4E-07 5.1E-12 92.1 16.2 119 125-267 32-153 (172)
151 KOG2300 Uncharacterized conser 98.8 0.00061 1.3E-08 73.6 41.9 222 537-774 287-551 (629)
152 TIGR02795 tol_pal_ybgF tol-pal 98.7 2.4E-07 5.2E-12 86.0 14.6 108 306-413 3-113 (119)
153 COG4235 Cytochrome c biogenesi 98.7 4.9E-07 1.1E-11 92.7 17.6 119 179-298 139-257 (287)
154 PF13414 TPR_11: TPR repeat; P 98.7 4.7E-08 1E-12 80.3 8.2 67 127-193 2-69 (69)
155 PRK11906 transcriptional regul 98.7 7.3E-07 1.6E-11 97.2 19.4 134 132-269 259-407 (458)
156 cd00189 TPR Tetratricopeptide 98.7 1.4E-07 3.1E-12 83.3 11.9 98 130-228 2-99 (100)
157 PRK11906 transcriptional regul 98.7 1.2E-06 2.5E-11 95.6 20.2 149 109-262 273-435 (458)
158 KOG3081 Vesicle coat complex C 98.7 7.7E-06 1.7E-10 81.4 23.8 195 527-743 74-270 (299)
159 PF09976 TPR_21: Tetratricopep 98.7 1E-06 2.3E-11 84.6 17.4 110 112-223 29-144 (145)
160 PRK10803 tol-pal system protei 98.7 5.9E-07 1.3E-11 94.2 16.8 108 128-235 142-255 (263)
161 CHL00033 ycf3 photosystem I as 98.7 6.1E-07 1.3E-11 88.9 16.2 99 112-211 17-120 (168)
162 PRK10803 tol-pal system protei 98.7 2.7E-07 5.8E-12 96.8 14.2 110 674-785 141-252 (263)
163 COG1729 Uncharacterized protei 98.7 2.1E-07 4.6E-12 94.2 12.8 107 678-786 144-251 (262)
164 PF09976 TPR_21: Tetratricopep 98.7 8.4E-07 1.8E-11 85.3 16.5 119 139-261 22-145 (145)
165 PRK10153 DNA-binding transcrip 98.7 1.3E-06 2.9E-11 101.0 21.1 141 124-269 333-488 (517)
166 PF13414 TPR_11: TPR repeat; P 98.7 9E-08 2E-12 78.6 8.2 67 161-228 2-69 (69)
167 PF12895 Apc3: Anaphase-promot 98.7 5.6E-08 1.2E-12 83.3 7.2 81 141-223 2-84 (84)
168 COG4105 ComL DNA uptake lipopr 98.7 7.1E-06 1.5E-10 82.4 22.5 199 127-374 33-236 (254)
169 KOG0543 FKBP-type peptidyl-pro 98.6 3.2E-07 6.9E-12 97.3 13.5 140 41-191 209-355 (397)
170 KOG3081 Vesicle coat complex C 98.6 3.3E-05 7.1E-10 77.1 25.7 250 314-625 17-274 (299)
171 PRK02603 photosystem I assembl 98.6 8.1E-07 1.8E-11 88.3 15.2 108 302-409 32-153 (172)
172 PF14938 SNAP: Soluble NSF att 98.6 8.9E-07 1.9E-11 95.6 16.7 202 384-622 43-266 (282)
173 PF10345 Cohesin_load: Cohesin 98.6 0.0041 8.9E-08 75.2 49.5 472 250-778 37-605 (608)
174 PF13432 TPR_16: Tetratricopep 98.6 1.3E-07 2.8E-12 76.5 7.3 63 133-195 2-64 (65)
175 KOG2471 TPR repeat-containing 98.6 5.2E-06 1.1E-10 88.8 20.8 137 110-246 222-384 (696)
176 KOG0543 FKBP-type peptidyl-pro 98.6 7E-07 1.5E-11 94.8 14.3 129 311-439 214-356 (397)
177 PF12895 Apc3: Anaphase-promot 98.6 7.6E-08 1.6E-12 82.5 5.8 80 108-188 3-84 (84)
178 cd00189 TPR Tetratricopeptide 98.6 7.4E-07 1.6E-11 78.6 12.5 98 164-265 2-99 (100)
179 COG0457 NrfG FOG: TPR repeat [ 98.6 0.00027 5.9E-09 74.6 34.2 203 200-408 62-268 (291)
180 COG0457 NrfG FOG: TPR repeat [ 98.6 0.0002 4.3E-09 75.7 32.9 224 108-374 37-268 (291)
181 PRK10153 DNA-binding transcrip 98.6 1.5E-06 3.3E-11 100.5 17.0 125 107-233 355-489 (517)
182 CHL00033 ycf3 photosystem I as 98.6 1.9E-06 4E-11 85.4 15.4 109 50-176 9-120 (168)
183 KOG4648 Uncharacterized conser 98.5 3.9E-08 8.3E-13 99.9 2.8 244 131-418 100-343 (536)
184 COG4105 ComL DNA uptake lipopr 98.5 3.6E-05 7.9E-10 77.4 23.5 199 524-784 33-238 (254)
185 COG1729 Uncharacterized protei 98.5 2.7E-06 5.8E-11 86.4 15.2 111 271-381 144-254 (262)
186 PF14938 SNAP: Soluble NSF att 98.5 2.1E-06 4.5E-11 92.8 15.6 183 391-625 30-228 (282)
187 PF13432 TPR_16: Tetratricopep 98.5 4.7E-07 1E-11 73.2 7.9 65 346-410 1-65 (65)
188 COG3898 Uncharacterized membra 98.5 0.00058 1.3E-08 71.7 32.0 293 169-478 91-393 (531)
189 PF13512 TPR_18: Tetratricopep 98.5 4.3E-06 9.3E-11 76.6 14.2 86 127-212 9-99 (142)
190 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 4.6E-06 9.9E-11 92.0 17.1 122 135-263 176-297 (395)
191 PRK15331 chaperone protein Sic 98.5 2.1E-06 4.5E-11 80.4 12.1 107 157-268 32-138 (165)
192 COG3898 Uncharacterized membra 98.4 0.00077 1.7E-08 70.9 31.2 126 303-437 261-391 (531)
193 KOG0985 Vesicle coat protein c 98.4 0.011 2.3E-07 69.6 56.4 578 37-735 675-1375(1666)
194 KOG1258 mRNA processing protei 98.4 0.0078 1.7E-07 67.8 41.4 187 448-689 297-489 (577)
195 PF13512 TPR_18: Tetratricopep 98.4 6.7E-06 1.4E-10 75.4 13.7 109 674-784 9-133 (142)
196 PF07079 DUF1347: Protein of u 98.4 0.0059 1.3E-07 65.9 45.4 439 105-619 17-521 (549)
197 KOG0985 Vesicle coat protein c 98.4 0.013 2.8E-07 69.0 55.8 227 523-799 1102-1328(1666)
198 KOG1258 mRNA processing protei 98.4 0.011 2.3E-07 66.8 40.6 394 144-606 61-488 (577)
199 PF14559 TPR_19: Tetratricopep 98.3 1.7E-06 3.8E-11 70.7 7.4 62 174-236 3-64 (68)
200 PF12688 TPR_5: Tetratrico pep 98.3 1.4E-05 3E-10 72.4 13.7 98 128-225 1-103 (120)
201 PF12688 TPR_5: Tetratrico pep 98.3 1.1E-05 2.3E-10 73.1 12.7 98 306-403 2-102 (120)
202 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.4E-05 3.1E-10 88.2 16.0 119 170-295 177-295 (395)
203 PF14559 TPR_19: Tetratricopep 98.3 2.1E-06 4.5E-11 70.2 7.1 65 139-204 2-66 (68)
204 KOG4234 TPR repeat-containing 98.3 1E-05 2.2E-10 76.6 12.2 105 132-237 99-208 (271)
205 COG5107 RNA14 Pre-mRNA 3'-end 98.3 0.012 2.6E-07 63.3 39.1 420 14-476 16-494 (660)
206 PF13371 TPR_9: Tetratricopept 98.2 6.3E-06 1.4E-10 68.5 8.7 60 136-195 3-62 (73)
207 PF07079 DUF1347: Protein of u 98.2 0.014 3.1E-07 63.1 40.4 132 655-793 394-539 (549)
208 KOG4234 TPR repeat-containing 98.2 2.3E-05 5.1E-10 74.2 13.0 114 165-281 98-215 (271)
209 KOG2796 Uncharacterized conser 98.2 0.00022 4.8E-09 70.7 19.7 161 542-723 166-332 (366)
210 COG4700 Uncharacterized protei 98.2 0.00011 2.4E-09 69.0 16.6 132 109-246 75-208 (251)
211 KOG2796 Uncharacterized conser 98.2 0.0007 1.5E-08 67.3 22.9 37 38-74 67-103 (366)
212 PF13371 TPR_9: Tetratricopept 98.2 1E-05 2.2E-10 67.2 8.7 70 169-239 2-71 (73)
213 KOG4648 Uncharacterized conser 98.1 1.6E-06 3.5E-11 88.4 3.5 89 107-195 110-198 (536)
214 COG5107 RNA14 Pre-mRNA 3'-end 98.1 0.022 4.8E-07 61.3 36.7 421 116-622 30-495 (660)
215 KOG4507 Uncharacterized conser 98.1 0.0006 1.3E-08 75.1 22.9 118 116-234 201-320 (886)
216 COG4700 Uncharacterized protei 98.1 0.00068 1.5E-08 63.8 19.6 126 596-740 92-219 (251)
217 PF13424 TPR_12: Tetratricopep 98.1 1.1E-05 2.4E-10 68.0 7.5 69 712-780 3-76 (78)
218 KOG4555 TPR repeat-containing 98.0 0.00033 7E-09 61.7 15.5 98 131-228 46-146 (175)
219 KOG2396 HAT (Half-A-TPR) repea 98.0 0.041 8.9E-07 60.5 40.2 101 522-622 457-559 (568)
220 KOG1586 Protein required for f 98.0 0.0035 7.6E-08 61.5 22.5 99 527-625 115-227 (288)
221 PF10345 Cohesin_load: Cohesin 97.9 0.11 2.4E-06 62.9 48.1 287 110-400 37-428 (608)
222 PLN03098 LPA1 LOW PSII ACCUMUL 97.9 4.4E-05 9.4E-10 83.5 9.9 69 123-191 70-141 (453)
223 KOG2610 Uncharacterized conser 97.9 0.0014 3.1E-08 67.5 19.7 172 565-750 109-283 (491)
224 PF13424 TPR_12: Tetratricopep 97.9 2.2E-05 4.8E-10 66.1 5.1 73 672-744 2-76 (78)
225 KOG1586 Protein required for f 97.8 0.0026 5.5E-08 62.5 19.2 134 391-560 88-230 (288)
226 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 7.7E-05 1.7E-09 81.6 10.0 70 157-226 70-141 (453)
227 KOG2062 26S proteasome regulat 97.8 0.12 2.5E-06 59.6 42.5 607 22-725 39-690 (929)
228 KOG4555 TPR repeat-containing 97.8 0.00047 1E-08 60.7 11.7 97 680-781 48-146 (175)
229 PF05843 Suf: Suppressor of fo 97.8 0.00065 1.4E-08 73.1 15.8 135 130-268 3-141 (280)
230 KOG4507 Uncharacterized conser 97.8 0.0047 1E-07 68.3 21.9 115 152-269 203-318 (886)
231 PF05843 Suf: Suppressor of fo 97.8 0.0009 2E-08 72.0 16.8 126 655-785 15-142 (280)
232 PF06552 TOM20_plant: Plant sp 97.7 0.0004 8.7E-09 65.9 11.3 109 108-240 5-123 (186)
233 KOG1550 Extracellular protein 97.7 0.021 4.5E-07 67.9 27.8 172 110-290 228-419 (552)
234 KOG1585 Protein required for f 97.7 0.0072 1.6E-07 59.8 19.3 128 418-583 119-251 (308)
235 KOG2610 Uncharacterized conser 97.6 0.0027 5.9E-08 65.4 17.0 164 309-476 107-275 (491)
236 PF10300 DUF3808: Protein of u 97.6 0.088 1.9E-06 61.1 31.7 120 283-405 248-376 (468)
237 PF06552 TOM20_plant: Plant sp 97.6 0.0011 2.4E-08 62.9 12.8 103 144-274 7-120 (186)
238 PF04184 ST7: ST7 protein; In 97.6 0.0017 3.7E-08 71.2 16.0 165 106-272 180-384 (539)
239 KOG1585 Protein required for f 97.6 0.0097 2.1E-07 58.9 19.2 159 421-617 83-251 (308)
240 PF04184 ST7: ST7 protein; In 97.6 0.0039 8.4E-08 68.5 18.3 187 568-785 177-381 (539)
241 KOG4642 Chaperone-dependent E3 97.6 0.00061 1.3E-08 66.9 10.5 121 348-468 16-137 (284)
242 PF13428 TPR_14: Tetratricopep 97.6 0.0002 4.3E-09 52.1 5.6 43 128-170 1-43 (44)
243 PF10300 DUF3808: Protein of u 97.5 0.0019 4.2E-08 74.6 16.7 173 44-225 192-375 (468)
244 KOG4642 Chaperone-dependent E3 97.5 0.0011 2.3E-08 65.3 11.6 85 107-191 23-107 (284)
245 KOG2396 HAT (Half-A-TPR) repea 97.5 0.26 5.6E-06 54.6 43.4 96 145-241 88-184 (568)
246 PF13428 TPR_14: Tetratricopep 97.5 0.00029 6.4E-09 51.3 5.4 42 198-239 2-43 (44)
247 KOG1550 Extracellular protein 97.4 0.06 1.3E-06 64.0 27.4 180 213-435 228-423 (552)
248 PF02259 FAT: FAT domain; Int 97.4 0.064 1.4E-06 60.5 26.2 70 264-333 142-212 (352)
249 PF08631 SPO22: Meiosis protei 97.4 0.25 5.4E-06 53.2 29.0 100 200-299 38-152 (278)
250 COG3118 Thioredoxin domain-con 97.3 0.025 5.4E-07 58.4 19.2 152 127-282 133-286 (304)
251 KOG0376 Serine-threonine phosp 97.3 0.00031 6.7E-09 76.6 5.8 89 107-195 17-105 (476)
252 PF13281 DUF4071: Domain of un 97.2 0.044 9.5E-07 59.9 21.2 130 560-694 142-278 (374)
253 KOG0376 Serine-threonine phosp 97.2 0.00048 1.1E-08 75.1 6.1 111 132-243 8-118 (476)
254 KOG0545 Aryl-hydrocarbon recep 97.2 0.0082 1.8E-07 59.4 13.8 104 128-232 178-299 (329)
255 PF08631 SPO22: Meiosis protei 97.2 0.2 4.4E-06 53.9 26.2 132 458-624 3-152 (278)
256 KOG2041 WD40 repeat protein [G 97.2 0.68 1.5E-05 53.0 31.9 187 250-474 750-936 (1189)
257 PF13281 DUF4071: Domain of un 97.2 0.06 1.3E-06 58.9 21.7 32 345-376 308-339 (374)
258 COG2909 MalT ATP-dependent tra 97.1 0.65 1.4E-05 55.4 30.3 238 525-775 415-684 (894)
259 KOG0530 Protein farnesyltransf 97.1 0.11 2.4E-06 52.4 20.7 183 112-295 61-251 (318)
260 KOG0890 Protein kinase of the 97.1 2 4.3E-05 56.9 39.1 392 273-677 1388-1840(2382)
261 PRK15180 Vi polysaccharide bio 97.1 0.17 3.7E-06 55.1 23.4 128 107-235 302-429 (831)
262 KOG0545 Aryl-hydrocarbon recep 97.1 0.013 2.7E-07 58.1 13.8 108 306-413 179-301 (329)
263 PF13431 TPR_17: Tetratricopep 97.1 0.00044 9.5E-09 46.8 2.8 32 117-148 2-33 (34)
264 COG2909 MalT ATP-dependent tra 97.1 1.1 2.4E-05 53.5 34.0 278 302-625 344-650 (894)
265 PF07719 TPR_2: Tetratricopept 97.0 0.0015 3.3E-08 44.4 5.0 34 750-783 1-34 (34)
266 PF13431 TPR_17: Tetratricopep 97.0 0.00078 1.7E-08 45.5 3.3 32 151-182 2-33 (34)
267 PF02259 FAT: FAT domain; Int 97.0 0.36 7.7E-06 54.4 27.1 69 302-370 143-212 (352)
268 KOG0128 RNA-binding protein SA 97.0 1.3 2.7E-05 52.5 38.1 114 655-772 440-556 (881)
269 PF04910 Tcf25: Transcriptiona 96.9 0.024 5.2E-07 62.9 16.3 175 25-229 25-225 (360)
270 COG3118 Thioredoxin domain-con 96.9 0.11 2.4E-06 53.9 19.3 153 560-729 135-287 (304)
271 PRK13184 pknD serine/threonine 96.9 1.4 3E-05 54.9 31.9 91 106-197 487-587 (932)
272 COG2976 Uncharacterized protei 96.9 0.1 2.2E-06 50.5 17.4 102 306-408 90-191 (207)
273 PF00515 TPR_1: Tetratricopept 96.8 0.0021 4.5E-08 43.7 4.4 32 751-782 2-33 (34)
274 PF08424 NRDE-2: NRDE-2, neces 96.8 0.081 1.8E-06 58.2 19.1 84 178-262 47-130 (321)
275 COG2976 Uncharacterized protei 96.8 0.066 1.4E-06 51.8 15.6 103 269-375 90-192 (207)
276 PF00515 TPR_1: Tetratricopept 96.8 0.0021 4.6E-08 43.6 4.3 32 129-160 2-33 (34)
277 PF07719 TPR_2: Tetratricopept 96.8 0.0034 7.4E-08 42.6 5.0 31 130-160 3-33 (34)
278 KOG0530 Protein farnesyltransf 96.7 0.37 8E-06 48.8 20.0 147 523-673 145-301 (318)
279 KOG0890 Protein kinase of the 96.7 4.4 9.5E-05 53.9 45.0 329 45-406 1388-1732(2382)
280 PRK13184 pknD serine/threonine 96.6 2.2 4.7E-05 53.2 31.1 108 275-386 482-596 (932)
281 KOG2041 WD40 repeat protein [G 96.6 1.9 4.2E-05 49.5 31.1 268 14-331 659-936 (1189)
282 KOG0551 Hsp90 co-chaperone CNS 96.6 0.12 2.6E-06 54.0 16.5 80 714-793 81-162 (390)
283 PRK15180 Vi polysaccharide bio 96.5 1.8 3.8E-05 47.6 26.1 127 138-268 299-425 (831)
284 KOG0551 Hsp90 co-chaperone CNS 96.5 0.086 1.9E-06 55.0 14.9 98 130-228 83-184 (390)
285 KOG1464 COP9 signalosome, subu 96.3 0.27 5.9E-06 49.6 16.8 204 355-589 40-261 (440)
286 COG0790 FOG: TPR repeat, SEL1 96.3 0.55 1.2E-05 51.3 21.3 173 536-728 52-236 (292)
287 PF04910 Tcf25: Transcriptiona 96.2 0.18 3.9E-06 56.0 17.1 150 119-268 31-227 (360)
288 KOG0128 RNA-binding protein SA 96.2 4.1 8.9E-05 48.4 38.0 433 110-617 95-558 (881)
289 PF03704 BTAD: Bacterial trans 96.2 0.26 5.7E-06 47.2 16.2 124 309-448 10-136 (146)
290 KOG1464 COP9 signalosome, subu 96.1 1.8 3.9E-05 44.0 23.8 200 389-625 40-263 (440)
291 PF04781 DUF627: Protein of un 96.1 0.04 8.7E-07 48.1 8.7 106 46-157 2-107 (111)
292 PF03704 BTAD: Bacterial trans 96.1 0.27 5.9E-06 47.1 15.8 27 452-478 10-36 (146)
293 KOG3364 Membrane protein invol 96.1 0.061 1.3E-06 48.4 9.8 76 713-788 31-109 (149)
294 PF08424 NRDE-2: NRDE-2, neces 96.0 0.57 1.2E-05 51.5 19.8 121 358-478 47-184 (321)
295 COG5116 RPN2 26S proteasome re 96.0 3.8 8.2E-05 46.2 25.5 194 21-228 38-239 (926)
296 KOG1308 Hsp70-interacting prot 95.9 0.004 8.6E-08 65.0 2.3 83 110-192 130-212 (377)
297 COG0790 FOG: TPR repeat, SEL1 95.9 1.2 2.5E-05 48.7 21.9 167 107-282 54-236 (292)
298 PF13174 TPR_6: Tetratricopept 95.9 0.013 2.8E-07 39.3 4.0 30 753-782 3-32 (33)
299 KOG2062 26S proteasome regulat 95.9 5 0.00011 47.0 34.3 134 655-797 515-655 (929)
300 KOG1308 Hsp70-interacting prot 95.8 0.0045 9.8E-08 64.6 2.0 95 134-229 120-214 (377)
301 PF13174 TPR_6: Tetratricopept 95.8 0.021 4.5E-07 38.3 4.7 32 715-746 1-32 (33)
302 PF09613 HrpB1_HrpK: Bacterial 95.7 0.14 3.1E-06 48.3 11.4 85 129-214 11-95 (160)
303 PF13176 TPR_7: Tetratricopept 95.7 0.016 3.4E-07 39.9 3.7 28 716-743 1-28 (36)
304 COG5159 RPN6 26S proteasome re 95.6 2.5 5.5E-05 43.4 20.2 177 449-673 126-317 (421)
305 PF13181 TPR_8: Tetratricopept 95.6 0.022 4.7E-07 38.5 4.2 30 199-228 3-32 (34)
306 PF13181 TPR_8: Tetratricopept 95.5 0.023 5E-07 38.4 4.1 30 752-781 3-32 (34)
307 KOG1144 Translation initiation 95.4 0.34 7.4E-06 56.0 14.9 14 889-902 243-256 (1064)
308 KOG3783 Uncharacterized conser 95.4 6.3 0.00014 44.7 25.2 95 112-208 251-349 (546)
309 PF14853 Fis1_TPR_C: Fis1 C-te 95.4 0.065 1.4E-06 40.3 6.3 42 751-792 2-43 (53)
310 PF04781 DUF627: Protein of un 95.4 0.23 5E-06 43.5 10.5 103 169-297 3-107 (111)
311 KOG3783 Uncharacterized conser 95.1 7.7 0.00017 44.1 24.2 254 251-558 250-524 (546)
312 KOG2422 Uncharacterized conser 95.1 1.7 3.7E-05 49.2 18.7 158 108-266 252-451 (665)
313 KOG1463 26S proteasome regulat 95.0 5.7 0.00012 42.1 23.7 169 236-407 133-318 (411)
314 COG4649 Uncharacterized protei 95.0 0.73 1.6E-05 43.6 13.2 122 655-778 72-195 (221)
315 PF14561 TPR_20: Tetratricopep 94.9 0.28 6E-06 42.1 9.6 65 148-212 8-73 (90)
316 PF09613 HrpB1_HrpK: Bacterial 94.8 0.36 7.9E-06 45.7 11.0 82 111-194 27-109 (160)
317 PF09986 DUF2225: Uncharacteri 94.8 0.27 5.9E-06 50.1 11.1 71 713-783 117-198 (214)
318 PF14853 Fis1_TPR_C: Fis1 C-te 94.8 0.14 3E-06 38.5 6.5 42 130-171 3-44 (53)
319 KOG1463 26S proteasome regulat 94.8 6.8 0.00015 41.6 23.9 276 132-436 8-314 (411)
320 COG4649 Uncharacterized protei 94.4 3.8 8.3E-05 39.0 16.3 126 134-262 64-195 (221)
321 KOG3824 Huntingtin interacting 94.4 0.19 4.1E-06 51.6 8.5 63 107-169 129-191 (472)
322 COG5159 RPN6 26S proteasome re 94.2 7.9 0.00017 39.9 23.0 163 272-434 129-310 (421)
323 PRK10941 hypothetical protein; 94.0 0.43 9.2E-06 50.4 10.7 61 135-195 188-248 (269)
324 TIGR02561 HrpB1_HrpK type III 94.0 1.6 3.4E-05 40.7 12.8 84 130-214 12-95 (153)
325 PRK12798 chemotaxis protein; R 93.9 6.9 0.00015 43.3 19.6 201 583-799 101-305 (421)
326 KOG2422 Uncharacterized conser 93.9 8.1 0.00018 44.1 20.4 156 538-706 251-450 (665)
327 PF10602 RPN7: 26S proteasome 93.8 0.37 7.9E-06 47.6 9.3 65 269-333 37-101 (177)
328 PF14561 TPR_20: Tetratricopep 93.7 0.51 1.1E-05 40.4 8.8 66 113-178 7-74 (90)
329 PF13176 TPR_7: Tetratricopept 93.6 0.12 2.7E-06 35.4 4.1 23 131-153 2-24 (36)
330 KOG3364 Membrane protein invol 93.5 1.1 2.4E-05 40.7 10.6 79 161-239 31-113 (149)
331 PRK10941 hypothetical protein; 93.5 0.7 1.5E-05 48.8 11.2 76 345-420 184-259 (269)
332 KOG3824 Huntingtin interacting 93.4 0.27 5.8E-06 50.6 7.5 69 170-239 124-192 (472)
333 PF10602 RPN7: 26S proteasome 93.3 0.66 1.4E-05 45.8 10.2 104 676-781 37-144 (177)
334 PRK11619 lytic murein transgly 93.3 24 0.00053 42.8 41.6 215 346-583 245-463 (644)
335 KOG3807 Predicted membrane pro 93.3 12 0.00027 39.3 20.2 199 201-417 188-403 (556)
336 KOG1538 Uncharacterized conser 93.3 17 0.00038 41.9 21.7 25 526-550 805-829 (1081)
337 PF08492 SRP72: SRP72 RNA-bind 93.1 0.0024 5.2E-08 48.4 -5.6 29 910-938 26-59 (59)
338 PF04190 DUF410: Protein of un 92.8 15 0.00033 38.9 22.8 139 522-687 87-240 (260)
339 KOG1144 Translation initiation 92.8 1.2 2.5E-05 52.0 12.1 23 854-876 216-238 (1064)
340 PF09986 DUF2225: Uncharacteri 92.7 1.5 3.2E-05 44.7 12.0 102 423-554 91-194 (214)
341 KOG1538 Uncharacterized conser 92.6 9 0.00019 44.1 18.4 58 130-187 587-657 (1081)
342 TIGR02561 HrpB1_HrpK type III 92.6 1.3 2.9E-05 41.2 10.1 69 111-179 27-95 (153)
343 PF12968 DUF3856: Domain of Un 92.3 3.9 8.5E-05 36.2 11.9 98 682-779 16-129 (144)
344 smart00028 TPR Tetratricopepti 92.2 0.24 5.2E-06 32.3 4.0 31 130-160 3-33 (34)
345 KOG4422 Uncharacterized conser 92.2 21 0.00046 39.3 31.9 339 124-477 203-590 (625)
346 smart00028 TPR Tetratricopepti 92.2 0.24 5.1E-06 32.3 3.9 28 716-743 3-30 (34)
347 PF12968 DUF3856: Domain of Un 92.0 7.7 0.00017 34.4 13.3 97 421-553 21-128 (144)
348 KOG2114 Vacuolar assembly/sort 91.9 35 0.00076 41.1 35.1 176 275-474 341-516 (933)
349 KOG3807 Predicted membrane pro 91.7 19 0.0004 38.1 18.1 60 528-589 187-246 (556)
350 PF12854 PPR_1: PPR repeat 91.2 0.43 9.4E-06 32.2 4.1 30 37-66 4-33 (34)
351 PF12862 Apc5: Anaphase-promot 91.0 1.4 3.1E-05 38.2 8.4 66 686-751 9-78 (94)
352 COG5191 Uncharacterized conser 90.8 0.55 1.2E-05 48.6 6.3 88 152-240 97-185 (435)
353 COG4976 Predicted methyltransf 90.5 0.51 1.1E-05 46.8 5.4 57 139-195 6-62 (287)
354 KOG1310 WD40 repeat protein [G 90.4 0.74 1.6E-05 51.2 7.2 94 135-229 381-477 (758)
355 PF10579 Rapsyn_N: Rapsyn N-te 90.2 1.3 2.8E-05 36.1 6.5 57 719-775 11-68 (80)
356 COG4976 Predicted methyltransf 89.9 0.49 1.1E-05 46.9 4.8 61 170-231 3-63 (287)
357 KOG0529 Protein geranylgeranyl 89.9 23 0.00051 39.0 17.7 163 111-273 46-234 (421)
358 COG3914 Spy Predicted O-linked 89.8 12 0.00027 42.9 16.1 102 169-274 74-182 (620)
359 COG3914 Spy Predicted O-linked 89.7 5.5 0.00012 45.6 13.3 128 113-240 50-185 (620)
360 PF15015 NYD-SP12_N: Spermatog 89.4 7.6 0.00016 42.4 13.4 86 168-256 182-284 (569)
361 COG1747 Uncharacterized N-term 89.1 45 0.00098 37.8 26.9 99 158-263 62-160 (711)
362 PF13374 TPR_10: Tetratricopep 89.1 0.76 1.7E-05 32.5 4.4 30 715-744 3-32 (42)
363 COG5191 Uncharacterized conser 89.0 0.8 1.7E-05 47.5 5.7 85 116-201 95-180 (435)
364 KOG1029 Endocytic adaptor prot 88.6 6.3 0.00014 46.1 12.9 15 875-889 356-370 (1118)
365 PF13041 PPR_2: PPR repeat fam 88.2 1.2 2.6E-05 33.2 5.0 45 593-637 3-47 (50)
366 KOG2581 26S proteasome regulat 88.1 45 0.00098 36.6 18.6 107 269-375 170-280 (493)
367 PF10579 Rapsyn_N: Rapsyn N-te 87.9 5.5 0.00012 32.6 8.6 60 200-259 9-68 (80)
368 KOG1839 Uncharacterized protei 87.5 5.1 0.00011 50.4 12.3 143 263-405 968-1128(1236)
369 KOG1839 Uncharacterized protei 87.4 6.5 0.00014 49.5 13.1 171 306-477 933-1128(1236)
370 KOG1310 WD40 repeat protein [G 87.2 2.4 5.3E-05 47.3 8.4 89 107-195 387-478 (758)
371 KOG1150 Predicted molecular ch 87.0 7.3 0.00016 37.6 10.3 28 905-934 195-222 (250)
372 PF04053 Coatomer_WDAD: Coatom 86.7 19 0.0004 41.5 15.7 161 133-330 266-427 (443)
373 PF13041 PPR_2: PPR repeat fam 86.4 2.9 6.3E-05 31.1 6.2 45 715-760 4-48 (50)
374 PF11817 Foie-gras_1: Foie gra 86.3 39 0.00084 35.6 16.9 87 691-777 154-245 (247)
375 PF11207 DUF2989: Protein of u 86.3 5 0.00011 39.7 9.2 80 686-770 117-198 (203)
376 PRK12798 chemotaxis protein; R 86.2 61 0.0013 36.1 23.8 30 342-371 257-286 (421)
377 PF04053 Coatomer_WDAD: Coatom 86.1 8.3 0.00018 44.2 12.5 123 536-697 272-395 (443)
378 PRK11619 lytic murein transgly 85.8 93 0.002 37.9 40.0 123 41-192 34-159 (644)
379 KOG1029 Endocytic adaptor prot 85.8 6.4 0.00014 46.0 11.0 37 858-894 326-365 (1118)
380 PF12862 Apc5: Anaphase-promot 85.8 5.4 0.00012 34.6 8.5 55 138-192 8-71 (94)
381 PF13374 TPR_10: Tetratricopep 85.6 1.7 3.6E-05 30.7 4.4 30 750-779 2-31 (42)
382 COG3629 DnrI DNA-binding trans 85.5 16 0.00035 38.6 13.1 61 130-190 155-215 (280)
383 PF15015 NYD-SP12_N: Spermatog 85.4 14 0.0003 40.5 12.5 89 134-223 182-288 (569)
384 COG2912 Uncharacterized conser 85.3 4.7 0.0001 41.9 8.9 64 108-171 195-258 (269)
385 PF12854 PPR_1: PPR repeat 85.0 1.2 2.5E-05 30.1 3.1 28 674-701 6-33 (34)
386 KOG0529 Protein geranylgeranyl 84.2 36 0.00078 37.6 15.2 136 103-239 84-237 (421)
387 PF07721 TPR_4: Tetratricopept 84.2 1.4 3E-05 27.5 2.9 22 716-737 3-24 (26)
388 PF07720 TPR_3: Tetratricopept 83.7 3.7 8E-05 28.1 5.0 19 166-184 5-23 (36)
389 PF11207 DUF2989: Protein of u 83.4 9.2 0.0002 37.9 9.6 75 393-468 123-198 (203)
390 PF07720 TPR_3: Tetratricopept 83.1 3.8 8.3E-05 28.0 4.9 33 129-161 2-36 (36)
391 PF10255 Paf67: RNA polymerase 83.0 5.3 0.00012 44.6 8.8 109 669-778 67-192 (404)
392 COG3629 DnrI DNA-binding trans 82.5 8.8 0.00019 40.6 9.8 61 343-403 154-214 (280)
393 KOG1832 HIV-1 Vpr-binding prot 82.5 0.98 2.1E-05 53.2 3.0 17 824-840 1256-1272(1516)
394 PF10516 SHNi-TPR: SHNi-TPR; 82.4 2.7 5.9E-05 29.1 4.0 29 715-743 2-30 (38)
395 PF10255 Paf67: RNA polymerase 82.2 13 0.00029 41.5 11.5 63 163-225 123-192 (404)
396 PF07721 TPR_4: Tetratricopept 82.1 2.4 5.2E-05 26.4 3.4 25 41-65 2-26 (26)
397 PLN03237 DNA topoisomerase 2; 79.8 6.2 0.00013 51.1 8.9 31 1012-1042 1259-1293(1465)
398 PF04190 DUF410: Protein of un 79.7 88 0.0019 33.2 21.5 136 126-281 88-241 (260)
399 KOG2561 Adaptor protein NUB1, 79.1 42 0.0009 37.2 13.3 24 755-778 272-295 (568)
400 KOG2581 26S proteasome regulat 78.8 1.1E+02 0.0024 33.8 23.1 133 655-790 140-287 (493)
401 COG1747 Uncharacterized N-term 77.9 1.3E+02 0.0029 34.2 26.7 226 524-784 65-293 (711)
402 COG2912 Uncharacterized conser 77.7 21 0.00045 37.4 10.4 76 345-420 184-259 (269)
403 KOG0163 Myosin class VI heavy 77.2 1.7E+02 0.0036 35.0 21.5 27 595-625 748-774 (1259)
404 KOG2393 Transcription initiati 76.8 3.5 7.5E-05 46.4 4.8 11 1026-1036 336-346 (555)
405 PF00244 14-3-3: 14-3-3 protei 76.7 90 0.0019 32.5 15.1 30 166-195 5-34 (236)
406 KOG0163 Myosin class VI heavy 75.7 1.8E+02 0.0039 34.7 22.9 35 666-706 739-773 (1259)
407 KOG1832 HIV-1 Vpr-binding prot 75.7 2.6 5.6E-05 49.9 3.6 9 828-836 1290-1298(1516)
408 KOG0066 eIF2-interacting prote 74.6 2.3 4.9E-05 46.4 2.7 20 1017-1036 91-110 (807)
409 PF06936 Selenoprotein_S: Sele 74.3 27 0.00058 34.6 9.7 13 927-939 117-129 (190)
410 KOG2063 Vacuolar assembly/sort 73.0 2.3E+02 0.0049 35.5 19.0 181 25-225 493-712 (877)
411 PF11817 Foie-gras_1: Foie gra 72.3 1.3E+02 0.0029 31.6 17.4 91 424-551 153-244 (247)
412 PF04840 Vps16_C: Vps16, C-ter 72.1 1.6E+02 0.0034 32.3 25.8 80 524-617 207-286 (319)
413 PF01535 PPR: PPR repeat; Int 71.6 4.4 9.5E-05 26.1 2.7 28 42-69 2-29 (31)
414 PF00244 14-3-3: 14-3-3 protei 71.0 1.4E+02 0.003 31.2 16.2 17 388-404 181-197 (236)
415 COG3947 Response regulator con 70.8 16 0.00034 38.2 7.4 55 348-402 285-339 (361)
416 KOG4014 Uncharacterized conser 70.7 1.1E+02 0.0023 29.9 15.1 110 303-420 32-154 (248)
417 KOG0686 COP9 signalosome, subu 69.9 23 0.00049 38.9 8.7 113 307-420 152-281 (466)
418 PRK14552 C/D box methylation g 69.9 2E+02 0.0044 32.7 16.9 30 816-845 291-320 (414)
419 PF10037 MRP-S27: Mitochondria 69.4 2.1E+02 0.0046 32.7 23.7 93 565-671 72-168 (429)
420 KOG3654 Uncharacterized CH dom 69.2 50 0.0011 36.9 11.1 11 891-901 422-432 (708)
421 KOG2063 Vacuolar assembly/sort 68.9 3.1E+02 0.0067 34.4 21.6 21 47-67 353-373 (877)
422 PF04097 Nic96: Nup93/Nic96; 68.3 1.1E+02 0.0024 37.2 15.4 242 135-414 265-542 (613)
423 TIGR03504 FimV_Cterm FimV C-te 68.3 10 0.00022 27.3 4.0 27 43-69 2-28 (44)
424 PF12739 TRAPPC-Trs85: ER-Golg 68.0 1.8E+02 0.004 33.3 16.4 26 166-191 212-237 (414)
425 smart00386 HAT HAT (Half-A-TPR 67.7 12 0.00026 24.2 4.3 28 212-239 2-29 (33)
426 PF10516 SHNi-TPR: SHNi-TPR; 67.6 9.9 0.00021 26.4 3.6 29 560-588 2-30 (38)
427 PF12739 TRAPPC-Trs85: ER-Golg 67.2 2.2E+02 0.0048 32.6 16.9 43 195-238 206-248 (414)
428 TIGR03504 FimV_Cterm FimV C-te 66.8 6.4 0.00014 28.4 2.7 25 718-742 3-27 (44)
429 PF01535 PPR: PPR repeat; Int 66.0 6.8 0.00015 25.2 2.7 27 677-703 2-28 (31)
430 KOG0687 26S proteasome regulat 65.6 1.5E+02 0.0032 31.9 13.1 99 128-226 104-210 (393)
431 PF13812 PPR_3: Pentatricopept 65.4 5.9 0.00013 26.2 2.3 29 41-69 2-30 (34)
432 TIGR03362 VI_chp_7 type VI sec 65.4 2.1E+02 0.0045 31.1 17.0 59 347-405 218-279 (301)
433 COG4455 ImpE Protein of avirul 65.3 42 0.00091 33.7 8.7 59 137-195 10-68 (273)
434 TIGR00756 PPR pentatricopeptid 64.8 6.8 0.00015 25.9 2.6 29 42-70 2-30 (35)
435 COG3947 Response regulator con 64.7 25 0.00055 36.7 7.5 59 165-224 282-340 (361)
436 smart00386 HAT HAT (Half-A-TPR 64.7 16 0.00035 23.6 4.4 27 143-169 2-28 (33)
437 PF11214 Med2: Mediator comple 64.7 97 0.0021 27.1 10.0 14 859-872 59-72 (105)
438 KOG0276 Vesicle coat complex C 63.8 1E+02 0.0022 35.9 12.5 92 112-222 655-746 (794)
439 PF10373 EST1_DNA_bind: Est1 D 63.7 1.2E+02 0.0025 32.5 13.4 62 544-605 1-62 (278)
440 KOG3677 RNA polymerase I-assoc 63.0 96 0.0021 34.3 11.6 63 307-370 237-300 (525)
441 KOG4279 Serine/threonine prote 62.7 55 0.0012 38.8 10.4 80 127-207 200-288 (1226)
442 COG4941 Predicted RNA polymera 62.5 2.3E+02 0.005 30.7 16.6 32 358-389 212-243 (415)
443 COG4455 ImpE Protein of avirul 62.4 43 0.00093 33.6 8.2 60 350-409 9-68 (273)
444 PF12921 ATP13: Mitochondrial 62.3 74 0.0016 29.3 9.6 82 677-758 4-96 (126)
445 cd00280 TRFH Telomeric Repeat 61.5 97 0.0021 30.3 10.2 126 40-171 13-153 (200)
446 PLN03086 PRLI-interacting fact 60.5 59 0.0013 38.2 10.4 15 874-888 12-26 (567)
447 KOG3054 Uncharacterized conser 60.1 1.1E+02 0.0024 31.0 10.5 12 909-920 155-166 (299)
448 KOG0686 COP9 signalosome, subu 60.0 51 0.0011 36.3 9.1 99 269-369 151-256 (466)
449 PF09670 Cas_Cas02710: CRISPR- 59.9 1.4E+02 0.003 33.7 13.2 60 132-191 135-198 (379)
450 KOG4364 Chromatin assembly fac 59.4 88 0.0019 36.6 11.1 12 1041-1052 502-513 (811)
451 PF14863 Alkyl_sulf_dimr: Alky 59.3 28 0.0006 32.7 6.3 52 126-177 68-119 (141)
452 TIGR00756 PPR pentatricopeptid 58.7 13 0.00028 24.5 3.1 29 677-705 2-30 (35)
453 KOG2114 Vacuolar assembly/sort 58.7 4.3E+02 0.0093 32.5 31.9 57 382-441 711-768 (933)
454 COG4941 Predicted RNA polymera 58.5 2.7E+02 0.0059 30.2 17.1 161 250-416 212-405 (415)
455 PF13812 PPR_3: Pentatricopept 58.3 16 0.00034 24.1 3.4 28 677-704 3-30 (34)
456 KOG0546 HSP90 co-chaperone CPR 58.3 14 0.00031 39.7 4.6 77 343-419 276-352 (372)
457 KOG4014 Uncharacterized conser 57.9 1.9E+02 0.0042 28.3 14.4 48 655-704 87-141 (248)
458 KOG4279 Serine/threonine prote 57.4 99 0.0022 36.8 11.2 78 607-689 257-334 (1226)
459 PF09670 Cas_Cas02710: CRISPR- 56.6 1.7E+02 0.0037 33.0 13.3 62 165-226 134-198 (379)
460 PF09205 DUF1955: Domain of un 56.5 1.7E+02 0.0036 27.1 12.4 112 655-778 16-148 (161)
461 KOG0804 Cytoplasmic Zn-finger 56.1 2.9E+02 0.0062 31.1 13.8 17 917-933 429-445 (493)
462 KOG4521 Nuclear pore complex, 55.4 5.6E+02 0.012 32.9 19.4 29 197-225 920-948 (1480)
463 PF07946 DUF1682: Protein of u 55.3 59 0.0013 35.7 9.1 9 827-835 240-248 (321)
464 COG5536 BET4 Protein prenyltra 54.9 1.6E+02 0.0034 31.0 11.0 167 107-274 45-233 (328)
465 KOG2038 CAATT-binding transcri 54.2 13 0.00027 44.0 3.7 14 985-998 844-857 (988)
466 PF10373 EST1_DNA_bind: Est1 D 53.6 43 0.00093 35.9 7.8 42 217-261 2-43 (278)
467 PF10446 DUF2457: Protein of u 53.4 6.3 0.00014 43.4 1.1 12 1025-1036 106-117 (458)
468 KOG1497 COP9 signalosome, subu 53.0 1.9E+02 0.0041 31.0 11.4 100 42-154 105-210 (399)
469 COG5187 RPN7 26S proteasome re 51.9 3.1E+02 0.0068 28.9 14.0 176 392-604 53-237 (412)
470 PF04097 Nic96: Nup93/Nic96; 51.8 5.2E+02 0.011 31.5 24.9 43 524-587 413-455 (613)
471 KOG0687 26S proteasome regulat 51.2 2.4E+02 0.0053 30.4 11.9 22 383-404 188-209 (393)
472 KOG0292 Vesicle coat complex C 50.0 5.9E+02 0.013 31.6 19.8 375 277-697 652-1140(1202)
473 PF07946 DUF1682: Protein of u 49.3 92 0.002 34.2 9.4 16 823-838 232-247 (321)
474 smart00299 CLH Clathrin heavy 48.9 2.3E+02 0.0049 26.4 14.6 50 350-400 15-64 (140)
475 PTZ00121 MAEBL; Provisional 48.7 2.2E+02 0.0048 37.0 12.9 13 115-127 137-149 (2084)
476 KOG2141 Protein involved in hi 48.7 11 0.00023 44.2 2.1 14 1066-1079 264-277 (822)
477 cd02680 MIT_calpain7_2 MIT: do 48.0 34 0.00074 28.0 4.3 21 726-746 18-38 (75)
478 KOG0276 Vesicle coat complex C 47.9 2.8E+02 0.0061 32.5 12.6 24 345-368 669-692 (794)
479 KOG0546 HSP90 co-chaperone CPR 46.6 30 0.00065 37.3 4.8 104 171-277 231-352 (372)
480 cd02680 MIT_calpain7_2 MIT: do 45.0 42 0.00091 27.5 4.4 17 174-190 18-34 (75)
481 PF10037 MRP-S27: Mitochondria 45.0 3E+02 0.0065 31.5 12.6 89 316-405 77-167 (429)
482 KOG4691 Uncharacterized conser 44.5 3.1E+02 0.0068 26.8 11.3 24 909-932 148-171 (227)
483 TIGR03362 VI_chp_7 type VI sec 44.4 4.5E+02 0.0097 28.5 15.3 37 140-176 111-147 (301)
484 PF11846 DUF3366: Domain of un 44.4 1E+02 0.0022 30.9 8.3 47 734-783 131-177 (193)
485 PF14863 Alkyl_sulf_dimr: Alky 43.4 73 0.0016 30.0 6.4 50 161-211 69-118 (141)
486 smart00299 CLH Clathrin heavy 42.3 2.9E+02 0.0062 25.7 15.2 40 205-244 15-54 (140)
487 PRK08475 F0F1 ATP synthase sub 42.2 3.1E+02 0.0068 26.7 10.9 42 848-889 49-90 (167)
488 PF13934 ELYS: Nuclear pore co 41.7 3.7E+02 0.008 27.8 11.9 70 655-736 92-162 (226)
489 KOG2357 Uncharacterized conser 40.7 1.8E+02 0.0039 32.2 9.4 19 820-838 285-303 (440)
490 KOG3677 RNA polymerase I-assoc 40.1 4.5E+02 0.0098 29.4 12.2 64 676-743 236-301 (525)
491 PRK15490 Vi polysaccharide bio 39.6 1.3E+02 0.0028 35.7 8.8 82 105-188 19-100 (578)
492 KOG4364 Chromatin assembly fac 39.3 2.7E+02 0.0058 32.9 10.9 98 851-948 267-365 (811)
493 PF08311 Mad3_BUB1_I: Mad3/BUB 39.1 3.1E+02 0.0068 25.2 15.3 119 657-777 1-126 (126)
494 TIGR02710 CRISPR-associated pr 39.0 3.3E+02 0.0072 30.5 11.5 134 45-191 135-275 (380)
495 cd02682 MIT_AAA_Arch MIT: doma 38.9 1.2E+02 0.0026 24.9 6.1 53 712-793 4-56 (75)
496 PLN03086 PRLI-interacting fact 38.8 2.2E+02 0.0047 33.8 10.5 66 860-925 5-70 (567)
497 PF13025 DUF3886: Protein of u 38.5 92 0.002 25.1 5.1 54 876-933 16-69 (70)
498 cd00280 TRFH Telomeric Repeat 38.2 1.5E+02 0.0032 29.2 7.5 66 730-796 85-156 (200)
499 COG5593 Nucleic-acid-binding p 38.2 25 0.00054 39.6 2.7 115 960-1093 664-785 (821)
500 KOG3654 Uncharacterized CH dom 37.9 2.2E+02 0.0047 32.2 9.6 68 859-929 390-457 (708)
No 1
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-116 Score=978.49 Aligned_cols=999 Identities=40% Similarity=0.646 Sum_probs=892.0
Q ss_pred CceeeeccCCCCceEEEeCCCCCCChhHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHH
Q 001357 1 MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRY 80 (1093)
Q Consensus 1 ~~~~~ip~~~~~~~v~~~~~~lp~~~~~~~~~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~ 80 (1093)
|+||+|||++++|||+||+++|| |++||++||+.+.+++++|+.+|.+||++|+.++|+.||+.++ .+....|.++..
T Consensus 3 ~~si~IPl~~sdeviei~~~~LP-D~~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~-~~~~~~y~d~~~ 80 (1018)
T KOG2002|consen 3 PRSIEIPLKDSDEVIEIDCDQLP-DATEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGL-IDANEEYADVKS 80 (1018)
T ss_pred CcceeeecCCcceeeeechhcCC-ChHHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhh-hcccchhcchHH
Confidence 57999999999999999999999 9999999999999999999999999999999999999999998 345567889999
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHhC
Q 001357 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV--EQASSAFKIVLEAD 158 (1093)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~--~~A~~~~~~al~~~ 158 (1093)
+.+.+++.||.+|...+........++..+..|+.+|+.+-.++......|+..+..++..|.. +.|...|..++...
T Consensus 81 ~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s 160 (1018)
T KOG2002|consen 81 DQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS 160 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC
Confidence 9999999999999999999988899999999999999999999999999999999999988876 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
|+|+.++++.|++.+..|+|..|+.+|..++..+|...+++++++|.|++++|+.+.|+..|.++++++|.++.+++.||
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhc
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 318 (1093)
.+.....+...+..++..+.+++..+|.+|.+++.|+..|+..|+|..+..++..++..+...+..++++|++|++|+.+
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 99999999889999999999999999999999999999999999999999999999998888888899999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHH
Q 001357 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG----QIEK 394 (1093)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~ 394 (1093)
|+|++|..+|..+++. .+..++.+++++|++|+..|+++.|+.+|+++++..|++.+++..+|.+|...+ ..+.
T Consensus 321 Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred ccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 9999999999999984 223358899999999999999999999999999999999999999999999886 6789
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 395 AQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1093)
Q Consensus 395 A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 474 (1093)
|..++.+++...|.+..+|+.++.++..++...++.+|..++.++...+...++++++++|..++..|++..|...|..+
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999999888888889999999998888887899999999999999999999999999999
Q ss_pred HhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 001357 475 LGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 554 (1093)
Q Consensus 475 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 554 (1093)
+..+...... .. ......++.|++|+++...++++.|...|..+++.
T Consensus 479 ~~~~~~~~n~--------------------------------de-~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 479 LGKLLEVANK--------------------------------DE-GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred hhhhhhhcCc--------------------------------cc-cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 8852100000 00 01234778999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCC-CChHHHHH
Q 001357 555 YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLS 633 (1093)
Q Consensus 555 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~d~~~~~~ 633 (1093)
+|.++++|++++.+....++..+|..+++.++..+..+|.+|..+|.+|++..+|..|...|..+++.... +|+|++++
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988875433 59999999
Q ss_pred hHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCc
Q 001357 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (1093)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (1093)
|||+ |+...+...+++..+.+.+++|+++|.++|..+|.|.++.+++|++++..|++.+|+.+|.++++... ++
T Consensus 606 LGN~-~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-----~~ 679 (1018)
T KOG2002|consen 606 LGNV-YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-----DF 679 (1018)
T ss_pred hhHH-HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-----hC
Confidence 9999 99999999999988999999999999999999999999999999999999999999999999999885 68
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHH
Q 001357 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVA 793 (1093)
Q Consensus 714 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~ 793 (1093)
+++|+|+||||+.+|+|..|+++|+.|+++|...+++.++.+||++|+..|.+.+|+.++.+++++.|.|+.+.||+|.+
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCChHHHhhhchhhHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001357 794 MQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAER 873 (1093)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 873 (1093)
+.+.+.+.++..++++++|.. ++.+|+.|+++|.+|+..+.. +++++.+.+++++|++|+++++.|..++++
T Consensus 760 ~kkla~s~lr~~k~t~eev~~-----a~~~le~a~r~F~~ls~~~d~---r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~ 831 (1018)
T KOG2002|consen 760 LKKLAESILRLEKRTLEEVLE-----AVKELEEARRLFTELSKNGDK---RISKTVIAQEAQLCKDLLKQALEHVAQAQE 831 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHH-----HHHHHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999 999999999999999998754 789999999999999999999999988775
Q ss_pred H-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcChhh-hhhhccCCC
Q 001357 874 E-EQQNRQRQ---EAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWRSSTPAS-KRRERSEND 948 (1093)
Q Consensus 874 ~-e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~ 948 (1093)
+ |++.++|| +.+++.++.++++|.++|++..+++.++++++.+...+..+.+.+-+++|+++.... |+|..+
T Consensus 832 e~e~er~~kq~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~~~~~~~~~e~~k~s~g~~~~~~~~~--- 908 (1018)
T KOG2002|consen 832 EDEEERRAKQEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRERTKEILKLPEIEEEKKKSGGGGRKRGDDS--- 908 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhhcCCCCCCCCCcC---
Confidence 4 44444555 455666677888888888887777777777777766666778888899998776654 333222
Q ss_pred CccccccccccccCCcccccccCcCc-cccchhhhhcccCCCCCCcchhccCCCCCCCCCC-CCCCchhhhhhhh-HHHh
Q 001357 949 DDEVGHSEKRRRKGGKRRKKDKSSRS-HYETEYAEADMMDYREEPEDEDASMNYREPIGQM-NDQDDDVEENAND-RLAA 1025 (1093)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~ 1025 (1093)
++..++||+||+|||+++++. ++..+.+|...+++...+..+..+..+..+|++. ...+.+++++.+. ..+.
T Consensus 909 -----~~~~e~kk~g~~kkKd~kkrkr~~k~~~~e~~~~~~~~k~~sk~~~~t~e~~D~~~~k~~~~~~~~ds~~~~~~~ 983 (1018)
T KOG2002|consen 909 -----DSDGERKKGGKRKKKDKKKRKRKPKKDSKEKLSESDRRKPKSKAFISTSERSDDDVVKKAESDSDDDSQDSREAS 983 (1018)
T ss_pred -----cccchhhccCccccccccccccCCcchhhhccChhhccchhhhhhhcccccccccccCcccCCcccccccccchh
Confidence 244455556655555333332 2334445667777777777777777666444332 3344444555555 7888
Q ss_pred cCCCCC-CCCCCCCCCchHHHHhhhcCCCCCChhh
Q 001357 1026 AGLEDS-DVDDEMAPSITAARRRRALSESDDDEPF 1059 (1093)
Q Consensus 1026 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1059 (1093)
++++++ |+|.|..+++. .||++++|.|||.+++
T Consensus 984 ~~~~~~~e~~~d~~~t~~-~~~~k~~~~sde~~~~ 1017 (1018)
T KOG2002|consen 984 EESDRPIESDSDSDETSK-KDRNKELNDSDEESEL 1017 (1018)
T ss_pred hccCCccccccccCcccc-cccchhhccccccccc
Confidence 888887 77777888888 9999999999987653
No 2
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4e-51 Score=526.79 Aligned_cols=699 Identities=21% Similarity=0.240 Sum_probs=513.0
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHH
Q 001357 32 ILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFI 111 (1093)
Q Consensus 32 ~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~ 111 (1093)
++...+.+...|+.+|..++..|++++|+.++++++...+. ...++..++.++...|...
T Consensus 151 a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~----------- 210 (899)
T TIGR02917 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPG---------NVDALLLKGDLLLSLGNIE----------- 210 (899)
T ss_pred HHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHhcCCHH-----------
Confidence 34455566777888888888888888888888887654332 2345666777777766655
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
+|+..|.+++..+|.++.+++.++.+++..|++++|...|+.++...|.++.+++..|.+++..|++++|+..|++++..
T Consensus 211 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 290 (899)
T TIGR02917 211 LALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKS 290 (899)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001357 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1093)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1093)
+|.. ...++.+|.++..+|+++.|+..|.+++...|.+..++..++.++...|+ +.+|+..+.+++..+|.++.++
T Consensus 291 ~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~ 366 (899)
T TIGR02917 291 APEY-LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR---VDEAIATLSPALGLDPDDPAAL 366 (899)
T ss_pred CCCc-hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCHHHH
Confidence 6655 33445556666666666666666666666666555555555555555555 5555555555555555555555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----------------
Q 001357 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---------------- 335 (1093)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 335 (1093)
..++.++...|++++|..++.+++... |.....++.+|.++...|++++|+..|..++...
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 443 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELD---PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLR 443 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh
Confidence 555555555555555555555554332 3333444444444444444444444444333211
Q ss_pred ---------------CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 336 ---------------NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1093)
Q Consensus 336 ---------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1093)
...|....++..+|.++...|++++|+.+|.+++..+|.+..++..++.++...|++++|+..|+
T Consensus 444 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 444 SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 03456667788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcch
Q 001357 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (1093)
Q Consensus 401 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 479 (1093)
+++...|.+..++..++.++ ..|++++|+.++.+++...+. ....+..++.++...|++++|+.++++++...+
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 598 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-----EIEPALALAQYYLGKGQLKKALAILNEAADAAP 598 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 88888888888888888888 888888888888888776443 356777788888888888888888888876432
Q ss_pred hhhhcccccchhhhhhhhhHHH----hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 001357 480 WLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY 555 (1093)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 555 (1093)
.. ............. ...+..+..+.. ..|.++.++..++.++...|++++|...|.+++..+
T Consensus 599 ~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 599 DS-------PEAWLMLGRAQLAAGDLNKAVSSFKKLLA------LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 10 0011111111111 122333333332 456778888999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhH
Q 001357 556 QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLG 635 (1093)
Q Consensus 556 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~ 635 (1093)
|++..++..++.++...|++++|..+++.+....|.++.++..+|.++...|++++|+..|.+++...|.. ..+..++
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~ 743 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLH 743 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887764 4556678
Q ss_pred hHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchh
Q 001357 636 NWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPD 715 (1093)
Q Consensus 636 ~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 715 (1093)
.+ |... |++++|+..+.+++..+|+++.+++.+|.++...|++++|+.+|+++++..| .++.
T Consensus 744 ~~-~~~~------------g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~ 805 (899)
T TIGR02917 744 RA-LLAS------------GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-----DNAV 805 (899)
T ss_pred HH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-----CCHH
Confidence 77 7777 9999999999999999999999999999999999999999999999999887 7889
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHH
Q 001357 716 VWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQ 795 (1093)
Q Consensus 716 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 795 (1093)
++.++|+++...|+ .+|+.+|++++.. .+.++.++..+|.+++..|++++|..+|++++...|.++.++++++.++.
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL 882 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 99999999999999 8899999999987 56678888999999999999999999999999999999999999988865
Q ss_pred HHH
Q 001357 796 KFS 798 (1093)
Q Consensus 796 ~~~ 798 (1093)
..+
T Consensus 883 ~~g 885 (899)
T TIGR02917 883 ATG 885 (899)
T ss_pred HcC
Confidence 543
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.4e-50 Score=519.55 Aligned_cols=717 Identities=21% Similarity=0.208 Sum_probs=578.6
Q ss_pred CCCCChhHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhh-------------------------
Q 001357 21 QLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYY------------------------- 75 (1093)
Q Consensus 21 ~lp~~~~~~~~~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~------------------------- 75 (1093)
+...-...+...+...+.....|+.+|.+|+.+|++++|+..+++++...+....
T Consensus 37 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~ 116 (899)
T TIGR02917 37 KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGK 116 (899)
T ss_pred ChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhccc
Confidence 4444455666777788889999999999999999999999999998765442100
Q ss_pred -hhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 76 -ADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV 154 (1093)
Q Consensus 76 -~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 154 (1093)
....+....++..+|.+|...| ++.+|...|++++..+|.++.+++.+|.+++..|++++|+..++++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 185 (899)
T TIGR02917 117 TLLDDEGAAELLALRGLAYLGLG-----------QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEV 185 (899)
T ss_pred ccCCchhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0011122333444444444444 4458999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 155 LEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 155 l~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
+..+|.+..++..+|.+++..|++++|+..|++++..+|.+ ..+++.++.++...|++++|...+.+++...|.++.++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 264 (899)
T TIGR02917 186 LTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAH 264 (899)
T ss_pred HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHH
Confidence 99999999999999999999999999999999999999988 67788899999999999999999999999999988888
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 001357 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314 (1093)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 314 (1093)
+..+.++...|+ +.+|+..|.+++..+|.+..++..++.+++..|++++|..++..++... |....++..++.+
T Consensus 265 ~~~~~~~~~~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~la~~ 338 (899)
T TIGR02917 265 YLKALVDFQKKN---YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA---PNSHQARRLLASI 338 (899)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHH
Confidence 888998888888 9999999999999999988888889999999999999999999988654 5556788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 001357 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEK 394 (1093)
Q Consensus 315 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 394 (1093)
+...|++++|+..+..++. ..|.....+..+|.++...|++++|+.+|++++...|++..++..+|.++...|++++
T Consensus 339 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 339 QLRLGRVDEAIATLSPALG---LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH
Confidence 9999999999999998887 5566777888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 395 AQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 473 (1093)
Q Consensus 395 A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 473 (1093)
|+..|.+++...|........++..+ ..|++++|+..+.......+. .+.+++.+|.++...|++++|+.+|.+
T Consensus 416 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD-----NASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999988888888888888 889999999988887664332 467889999999999999999999999
Q ss_pred HHhcchhhhhcccccchhhhhhhhhHHH----hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHH
Q 001357 474 ALGDGIWLTLLDSKTKTYVIDASASMLQ----FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549 (1093)
Q Consensus 474 al~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 549 (1093)
++...+.. ............. ......+..+.. ..|.+..++..++.++...|++++|..++.
T Consensus 491 a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 491 ALSIEPDF-------FPAAANLARIDIQEGNPDDAIQRFEKVLT------IDPKNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred HHhhCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 98754311 1111111111111 123333444333 456677788888888888888888888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChH
Q 001357 550 LILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY 629 (1093)
Q Consensus 550 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~ 629 (1093)
+++..+|.+...+..++.++...|++++|+.++++++...|.++.++..+|.++...|++++|+..|++++...|. +..
T Consensus 558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 636 (899)
T TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SAL 636 (899)
T ss_pred HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888877665 566
Q ss_pred HHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCC
Q 001357 630 ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSV 709 (1093)
Q Consensus 630 ~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 709 (1093)
++..++.+ |... |++++|+..|++++..+|++..+++.++.++...|++++|+.++..+.+..|
T Consensus 637 ~~~~l~~~-~~~~------------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--- 700 (899)
T TIGR02917 637 ALLLLADA-YAVM------------KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP--- 700 (899)
T ss_pred HHHHHHHH-HHHc------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc---
Confidence 67777777 7777 8888888888888888888888888888888888888888888888887776
Q ss_pred CCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhH
Q 001357 710 FVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFD 789 (1093)
Q Consensus 710 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 789 (1093)
..+.++..+|.++...|++++|+..|++++...|.+ .++..++.++...|++.+|...+++++...|+++.++++
T Consensus 701 --~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 775 (899)
T TIGR02917 701 --KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS---QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTA 775 (899)
T ss_pred --CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 567778888888888888888888888888764322 667778888888888888888888888888888888888
Q ss_pred HHHHHHHHH
Q 001357 790 AGVAMQKFS 798 (1093)
Q Consensus 790 la~~~~~~~ 798 (1093)
+|.++...+
T Consensus 776 la~~~~~~g 784 (899)
T TIGR02917 776 LAELYLAQK 784 (899)
T ss_pred HHHHHHHCc
Confidence 887765443
No 4
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-45 Score=406.90 Aligned_cols=583 Identities=17% Similarity=0.165 Sum_probs=512.0
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
++.|.+.|.-+++..|.+...+++.|.+.+..|+|..|+.+|..++..+|.. +...+++|.|+.++|+.+.|+..|.++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 5689999999999999999999999999999999999999999999999876 567789999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC
Q 001357 189 LQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1093)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1093)
++++|.+ ..++..||.+-.... .+..++..+.++...+|.||.++..|+..++..|+ +..+..+...++...-
T Consensus 226 lqLdp~~-v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d---y~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 226 LQLDPTC-VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKD---YERVWHLAEHAIKNTE 301 (1018)
T ss_pred HhcChhh-HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhccc---HHHHHHHHHHHHHhhh
Confidence 9999988 777788887766655 47789999999999999999999999999999999 9999999999887764
Q ss_pred C---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch
Q 001357 266 Y---CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (1093)
Q Consensus 266 ~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 342 (1093)
. -...++.+|..|..+|+|++|..+|-.++...+.+ ....++.+|..|...|+++.|..+|++++. ..|+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k---~~p~~~ 376 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLK---QLPNNY 376 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHH---hCcchH
Confidence 3 34569999999999999999999999999766443 357789999999999999999999999998 667888
Q ss_pred hhHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 001357 343 FPYYGLGQVQLKLG----DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQAF 413 (1093)
Q Consensus 343 ~~~~~la~~~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-----~p~~~~~~ 413 (1093)
.....+|.+|...+ ..+.|..++.+++...|.+..+|..++.++....-+.. +.+|..++.. .+--+..+
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHH
Confidence 88899999998886 67899999999999999999999999999887655544 9999988843 35568899
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHHHHh-c----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccc
Q 001357 414 IDLGELL-ISSDTGAALDAFKTARTLLKK-A----GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSK 487 (1093)
Q Consensus 414 ~~la~~~-~~~~~~~A~~~~~~a~~~~~~-~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 487 (1093)
.++|.++ ..|++..|...|..+...... . +......+.+|++.++-..++++.|...|...+.
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk----------- 524 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK----------- 524 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH-----------
Confidence 9999999 999999999999999887331 1 1123356789999999999999999999999998
Q ss_pred cchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001357 488 TKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAA 567 (1093)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 567 (1093)
.+|..+..+..+|......+...+|..++..++..+..++.++..+|.
T Consensus 525 --------------------------------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 525 --------------------------------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGN 572 (1018)
T ss_pred --------------------------------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHH
Confidence 568899999999988888899999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcC--CChhHHHHhhhhhhcc------------cchHHHHHHHHHhhhcCCCCChHHHHH
Q 001357 568 IAKARNNLQLSIELVNEALKVNG--KYPNALSMLGDLELKN------------DDWVKAKETFRAASDATDGKDSYATLS 633 (1093)
Q Consensus 568 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~l~~~~~~d~~~~~~ 633 (1093)
++.....+..|..-|...+.... .++.+...||++++.. +.+++|++.|.+++...|. +.|+-..
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccc
Confidence 99999999999887777766443 3455667788876653 4588999999999999988 8899999
Q ss_pred hHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCc
Q 001357 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQM 713 (1093)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 713 (1093)
+|.+ +... |++..|+.+|.++.+...++..+|.++|.||+.+|+|..|+++|+.++...-.. ++
T Consensus 652 IgiV-LA~k------------g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~---~~ 715 (1018)
T KOG2002|consen 652 IGIV-LAEK------------GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKK---NR 715 (1018)
T ss_pred hhhh-hhhc------------cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhccc---CC
Confidence 9988 7777 999999999999999888889999999999999999999999999999886322 68
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhc
Q 001357 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAE 764 (1093)
Q Consensus 714 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g 764 (1093)
+.++..||.+++..|.+.+|...+..++.. .+.++.+.+++|.+..+.+
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHHH
Confidence 899999999999999999999999999998 5667788888888877643
No 5
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.2e-42 Score=443.35 Aligned_cols=652 Identities=14% Similarity=0.119 Sum_probs=532.8
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHH
Q 001357 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQY 116 (1093)
Q Consensus 37 ~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~ 116 (1093)
..+....+..++.+..+++.+.|.+.|.+++..+|+ .+.++..++.+++..|+.. +|...
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~---------~p~~~~~~~~~~l~~g~~~-----------~A~~~ 84 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPN---------NPDVIAARFRLLLRQGDSD-----------GAQKL 84 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCC---------CHHHHHHHHHHHHhCCCHH-----------HHHHH
Confidence 446677899999999999999999999999877653 4667888889998888877 99999
Q ss_pred HHHHHhcCCCChhhH----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChH
Q 001357 117 YNKASRIDMHEPSTW----------------VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP-ALLGQACVEFNRGRYS 179 (1093)
Q Consensus 117 ~~~a~~~~p~~~~~~----------------~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~la~~~~~~g~~~ 179 (1093)
++++++++|+++.++ +.+|.++...|++++|+..|++++..+|.+.. ++.....+....|+++
T Consensus 85 l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~ 164 (1157)
T PRK11447 85 LDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRP 164 (1157)
T ss_pred HHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHH
Confidence 999999999998764 56678899999999999999999999888764 2222333334569999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh-------------
Q 001357 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE------------- 246 (1093)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------------- 246 (1093)
+|+..|++++..+|.+ ..+++.+|.+++..|++++|+..|++++...+....+...........+.
T Consensus 165 ~A~~~L~~ll~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~ 243 (1157)
T PRK11447 165 EAINQLQRLNADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQ 243 (1157)
T ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence 9999999999999999 77899999999999999999999999987655432221111000001111
Q ss_pred ----HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHH
Q 001357 247 ----AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1093)
Q Consensus 247 ----~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1093)
...+..|...+.+.....++.......++..+...|++++|+..+++++... |.++.+++.+|.+|...|+++
T Consensus 244 ~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~---P~~~~a~~~Lg~~~~~~g~~~ 320 (1157)
T PRK11447 244 VFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN---PKDSEALGALGQAYSQQGDRA 320 (1157)
T ss_pred HCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHH
Confidence 0112334444443333322222233456888999999999999999999764 677899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCc-----------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 001357 323 KAGLYYMASVKEINKPHEF-----------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ 391 (1093)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 391 (1093)
+|+.+|.+++...+..+.. ......+|.++...|++++|+.+|++++..+|.+..++..+|.++...|+
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~ 400 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD 400 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999854433221 11234568889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHcCCHHHH
Q 001357 392 IEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKA----GEEVPIEVLNNIGVIHFEKGEFESA 467 (1093)
Q Consensus 392 ~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A 467 (1093)
+++|+..|++++..+|++..++..++.++..+++++|+.++..+....+.. ........+..+|.++...|++++|
T Consensus 401 ~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA 480 (1157)
T PRK11447 401 YAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA 480 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999995568899998887643322110 0011234567889999999999999
Q ss_pred HHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHH
Q 001357 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 547 (1093)
Q Consensus 468 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 547 (1093)
+..|++++. ..|.++.+++.+|.+|...|++++|+..
T Consensus 481 ~~~~~~Al~-------------------------------------------~~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 481 AELQRQRLA-------------------------------------------LDPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHHHHH-------------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998 5678889999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC----------hhHHHHhhhhhhcccchHHHHHHHH
Q 001357 548 YRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKY----------PNALSMLGDLELKNDDWVKAKETFR 617 (1093)
Q Consensus 548 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (1093)
|++++..+|.++..++.++..+...+++++|+..++++....... ......++..+...|++++|+..+.
T Consensus 518 l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 518 MRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999988754322111 1123467888999999999999887
Q ss_pred HhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHH
Q 001357 618 AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDL 697 (1093)
Q Consensus 618 ~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 697 (1093)
..|. +...++.++.+ |... |++++|+..|++++..+|+++.++++++.+|...|++++|+..
T Consensus 598 ----~~p~-~~~~~~~La~~-~~~~------------g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 598 ----QQPP-STRIDLTLADW-AQQR------------GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred ----hCCC-CchHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444 55677889999 8888 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHhhccHHHHHHHH
Q 001357 698 FTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT----DAQILLYLARTHYEAEQWQDCKKSL 773 (1093)
Q Consensus 698 ~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~l~~la~~~~~~g~~~~A~~~~ 773 (1093)
|++++...| +++.++..+|.++...|++++|+.+|++++...+..+ +..++..+|.++...|++++|+..|
T Consensus 660 l~~ll~~~p-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 660 LAKLPATAN-----DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HHHHhccCC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999998877 7788999999999999999999999999998754332 2456778899999999999999999
Q ss_pred HHHHH
Q 001357 774 LRAIH 778 (1093)
Q Consensus 774 ~~al~ 778 (1093)
++++.
T Consensus 735 ~~Al~ 739 (1157)
T PRK11447 735 KDAMV 739 (1157)
T ss_pred HHHHh
Confidence 99985
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.3e-41 Score=436.13 Aligned_cols=622 Identities=17% Similarity=0.088 Sum_probs=504.6
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
...+...+.++...++.+ .|.+.+.+++.++|+++.++..++.+++..|++++|...+++++..+|+++
T Consensus 28 ~~~Ll~q~~~~~~~~~~d-----------~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~ 96 (1157)
T PRK11447 28 QQQLLEQVRLGEATHRED-----------LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSN 96 (1157)
T ss_pred HHHHHHHHHHHHhhCChH-----------HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCh
Confidence 344666666666666655 899999999999999999999999999999999999999999999999998
Q ss_pred HHH----------------HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001357 163 PAL----------------LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1093)
Q Consensus 163 ~a~----------------~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1093)
.++ +.+|.++...|++++|+..|++++..+|.........+..+....|++++|+..|++++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 97 AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Confidence 763 6678889999999999999999999988873322223333444569999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCC----
Q 001357 227 DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP---- 302 (1093)
Q Consensus 227 ~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---- 302 (1093)
+|+++.++..+|.++...|+ +.+|+..+.+++...+....+...........+....+...+...+...+..+
T Consensus 177 ~P~~~~~~~~LA~ll~~~g~---~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~ 253 (1157)
T PRK11447 177 YPGNTGLRNTLALLLFSSGR---RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAA 253 (1157)
T ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHH
Confidence 99999999999999999999 99999999999876544322211111111122222233333332222111111
Q ss_pred -------------CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 303 -------------TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1093)
Q Consensus 303 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1093)
........+|.++...|++++|+..|++++. ..|....+++.+|.++...|++++|+.+|++++
T Consensus 254 A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~---~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 254 ARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR---ANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111223568899999999999999999998 567788999999999999999999999999999
Q ss_pred HhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 001357 370 EIYPDNCE--------------TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKT 434 (1093)
Q Consensus 370 ~~~p~~~~--------------~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~ 434 (1093)
+.+|++.. ....+|.++...|++++|+..|++++..+|.+..++..++.++ ..|++++|+..|++
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99987642 2234578889999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccC
Q 001357 435 ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 514 (1093)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 514 (1093)
++.+.|. ...++..++.++. .+++++|+.++..+...... .+...
T Consensus 411 aL~~~p~-----~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~-----------------------~~~~~------ 455 (1157)
T PRK11447 411 ALRMDPG-----NTNAVRGLANLYR-QQSPEKALAFIASLSASQRR-----------------------SIDDI------ 455 (1157)
T ss_pred HHHhCCC-----CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHH-----------------------HHHHH------
Confidence 9988654 4677888888875 46789999888764431100 00000
Q ss_pred CCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh
Q 001357 515 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (1093)
Q Consensus 515 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 594 (1093)
........+..+|.++...|++++|+..|++++..+|+++.+++.++.++...|++++|+..+++++...|.++.
T Consensus 456 -----~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 456 -----ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred -----HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 001123457788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChH---------HHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHH
Q 001357 595 ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY---------ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (1093)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~---------~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (1093)
+++.++.++...+++++|+..+.++.......... ..+.+++. +... |++++|+.+++
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~-l~~~------------G~~~eA~~~l~ 597 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR-LRDS------------GKEAEAEALLR 597 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH-HHHC------------CCHHHHHHHHH
Confidence 99999999999999999999999865432221111 12334555 5555 99999998876
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhc
Q 001357 666 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1093)
Q Consensus 666 ~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 745 (1093)
..|.++.++..+|.++...|++++|+..|+++++..| .++.+++++|.+|...|++++|+..|+.++..
T Consensus 598 ----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-----~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-- 666 (1157)
T PRK11447 598 ----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-----GNADARLGLIEVDIAQGDLAAARAQLAKLPAT-- 666 (1157)
T ss_pred ----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 6899999999999999999999999999999999998 78999999999999999999999999998876
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcc
Q 001357 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1093)
Q Consensus 746 ~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 785 (1093)
.+.++.++..+|.++...|++++|..+|++++...|.++.
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 5566888999999999999999999999999999887664
No 7
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-43 Score=375.36 Aligned_cols=452 Identities=21% Similarity=0.246 Sum_probs=351.0
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 204 (1093)
+........++.-.++.|+|.+|.+.+..+...+|.+...+..++.++++..+++.....-..+++.+|.. ...+.++|
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~-ae~ysn~a 123 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQG-AEAYSNLA 123 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchH-HHHHHHHH
Confidence 33444466677777777788888777777777777777777777777777777777777777777777777 66677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCh
Q 001357 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQH 284 (1093)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 284 (1093)
.++-..|+++.|+..|+.++++.|++.++|..+|.++...|+ ...|.++|..+++++|...-+...++.++-..|..
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~---~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD---LELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC---CcccHHHHHHHHhcCcchhhhhcchhHHHHhhccc
Confidence 777777788888888887777777777788878777777777 77777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHH
Q 001357 285 FLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTN 364 (1093)
Q Consensus 285 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 364 (1093)
.+|...+.+++... |..+.+|.++|-++..+|+.-.|+..|++++. .+|.+..+|++||.+|...+.|+.|+.+
T Consensus 201 ~ea~~cYlkAi~~q---p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 201 EEAKACYLKAIETQ---PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred chhHHHHHHHHhhC---CceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 77777777777543 56667777888888888888888888888876 6677777888888888888888888888
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcC
Q 001357 365 FEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG 443 (1093)
Q Consensus 365 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~ 443 (1093)
|.+++...|++..++.++|.+|+.+|..+-|+..|++++.+.|+.+.++.+++..+ ..|+..+|..+|.+++.+.+.
T Consensus 275 Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-- 352 (966)
T KOG4626|consen 275 YLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-- 352 (966)
T ss_pred HHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc--
Confidence 88888888888888888888888888888888888888888888888888888877 778888888888888777665
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCc
Q 001357 444 EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWN 523 (1093)
Q Consensus 444 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 523 (1093)
.+..++++|.+|...|+++.|..+|.+++. ..|.
T Consensus 353 ---hadam~NLgni~~E~~~~e~A~~ly~~al~-------------------------------------------v~p~ 386 (966)
T KOG4626|consen 353 ---HADAMNNLGNIYREQGKIEEATRLYLKALE-------------------------------------------VFPE 386 (966)
T ss_pred ---cHHHHHHHHHHHHHhccchHHHHHHHHHHh-------------------------------------------hChh
Confidence 377778888888888888888888888777 5567
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhh
Q 001357 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 603 (1093)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 603 (1093)
.+.+..++|.+|.++|++++|+..|+.++.+.|..++++.++|..|..+|+...|+.+|.+++.++|...+++.++|.+|
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~ 466 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIY 466 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh
Confidence 77778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcccchHHHHHHHHHhhhcCCCCChHHHHHhH
Q 001357 604 LKNDDWVKAKETFRAASDATDGKDSYATLSLG 635 (1093)
Q Consensus 604 ~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~ 635 (1093)
-..|+..+|+..|+.++++.|+ .+.+..++.
T Consensus 467 kDsGni~~AI~sY~~aLklkPD-fpdA~cNll 497 (966)
T KOG4626|consen 467 KDSGNIPEAIQSYRTALKLKPD-FPDAYCNLL 497 (966)
T ss_pred hccCCcHHHHHHHHHHHccCCC-CchhhhHHH
Confidence 8888888888888888877765 334444443
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-43 Score=375.76 Aligned_cols=453 Identities=20% Similarity=0.274 Sum_probs=432.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.|+|.+|.+.++.+...||.+...+..++.++++..+++.....-..+++.+|...+++..+|.++...|+++.|+.+|+
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~ 140 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYR 140 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1093)
.++++.|+. .+.|.++|.++...|+.+.|..+|..+++++|+...+...+|.++...|. ..+|-.+|.+++...|.
T Consensus 141 ~aiel~p~f-ida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Gr---l~ea~~cYlkAi~~qp~ 216 (966)
T KOG4626|consen 141 AAIELKPKF-IDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGR---LEEAKACYLKAIETQPC 216 (966)
T ss_pred HHHhcCchh-hHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcc---cchhHHHHHHHHhhCCc
Confidence 999999999 88899999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHH
Q 001357 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (1093)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1093)
...+|..||.++...|+...|+..|+++++.. |....+|+++|.+|...+.|+.|+..|.+++. ..|....++-
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld---P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lrpn~A~a~g 290 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD---PNFLDAYINLGNVYKEARIFDRAVSCYLRALN---LRPNHAVAHG 290 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCC---CcchHHHhhHHHHHHHHhcchHHHHHHHHHHh---cCCcchhhcc
Confidence 99999999999999999999999999999664 77789999999999999999999999999998 6789999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001357 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (1093)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~ 425 (1093)
++|.+|+.+|..+-||.+|++++.+.|+.+.++.++|.++...|+..+|..+|.+++.+.|+.+++..+||.++ ..|.+
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhh
Q 001357 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (1093)
Q Consensus 426 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1093)
+.|..+|.+++...|.. ....+++|.+|-++|++++|+.+|+.++.
T Consensus 371 e~A~~ly~~al~v~p~~-----aaa~nNLa~i~kqqgnl~~Ai~~Ykealr----------------------------- 416 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEF-----AAAHNNLASIYKQQGNLDDAIMCYKEALR----------------------------- 416 (966)
T ss_pred hHHHHHHHHHHhhChhh-----hhhhhhHHHHHHhcccHHHHHHHHHHHHh-----------------------------
Confidence 99999999999998874 78899999999999999999999999998
Q ss_pred hhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1093)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 585 (1093)
+.|..+.++.++|.+|..+|+...|+..|.+++..+|..++++.+|+.+|...|+..+|+..|+.+
T Consensus 417 --------------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 417 --------------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred --------------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChhHHHHhhhhhhcccchHHHHHHHH
Q 001357 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFR 617 (1093)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (1093)
+++.|+.++++.++..++.-..+|..--..+.
T Consensus 483 LklkPDfpdA~cNllh~lq~vcdw~D~d~~~~ 514 (966)
T KOG4626|consen 483 LKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMK 514 (966)
T ss_pred HccCCCCchhhhHHHHHHHHHhcccchHHHHH
Confidence 99999999999999988776666554333333
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=7.8e-37 Score=371.95 Aligned_cols=663 Identities=11% Similarity=0.003 Sum_probs=518.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHH
Q 001357 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1093)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a 120 (1093)
...+..|..+...|++++|+..|+.++..+|. ...++..|+.+|+.+|+.. +|+..++++
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~---------n~~~~~~LA~~yl~~g~~~-----------~A~~~~~kA 104 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPD---------NIPLTLYLAEAYRHFGHDD-----------RARLLLEDQ 104 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHH-----------HHHHHHHHH
Confidence 46788888888889999999999999887663 3667899999999999888 999999999
Q ss_pred HhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HHHcCChHHHHHHHHHHHHhC
Q 001357 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV--------EFNRGRYSDSLEFYKRALQVH 192 (1093)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~--------~~~~g~~~~Al~~~~~al~~~ 192 (1093)
+..+|.+...+..++.+ +++++|+..|++++..+|++..+++.++.. |.+.+...+++. .+.+...
T Consensus 105 v~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~ 178 (987)
T PRK09782 105 LKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAAS 178 (987)
T ss_pred HhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCC
Confidence 99999988888877666 999999999999999999999999999998 666655555554 3333333
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001357 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1093)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1093)
|.. ..+.+.++.+|..+|++++|+..+.++++..|.+...+..|+.+|... ++ +.++.++...++ .++.++
T Consensus 179 ~~~-~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~----~~a~al~~~~lk---~d~~l~ 250 (987)
T PRK09782 179 PEG-KTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD----DRLLALQSQGIF---TDPQSR 250 (987)
T ss_pred CCc-HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH----HHHHHHhchhcc---cCHHHH
Confidence 333 556777799999999999999999999999999999999999988873 43 666666554332 788899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 001357 272 NYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQV 351 (1093)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 351 (1093)
..++..|...|+.++|..++...-......|......+.+++..... ..|...|.+= ..++...+.+.+...
T Consensus 251 ~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~ 322 (987)
T PRK09782 251 ITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP---VQALANYTVQ-----FADNRQYVVGATLPV 322 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch---hhhccchhhh-----hHHHHHHHHHHHHHH
Confidence 99999999999999999999987766666666666666666654332 2333333331 224445567777899
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHH
Q 001357 352 QLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALD 430 (1093)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~ 430 (1093)
+...+.+..+..+ +...|.+.. ...........+.+.++...+..+.+..|.+......++.+. ..|+..+|..
T Consensus 323 ~~~~~~~~~~~~~----~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~ 397 (987)
T PRK09782 323 LLKEGQYDAAQKL----LATLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAAD 397 (987)
T ss_pred HHhccHHHHHHHH----hcCCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 9999999955533 455676664 322233334558888999999998888899999999999998 9999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhc--chhhhhcccccchhhhhhhhhHHHhhhh
Q 001357 431 AFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE---FESAHQSFKDALGD--GIWLTLLDSKTKTYVIDASASMLQFKDM 505 (1093)
Q Consensus 431 ~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1093)
.|..+... +.. ...+..+...++.+|...+. ...+..+...+-.. +.|..-..+. ....
T Consensus 398 ~~~~~~~~-~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------------~~~~ 461 (987)
T PRK09782 398 LLLQRYPF-QGD-ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGI--------------ADNC 461 (987)
T ss_pred HHHHhcCC-Ccc-cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhh--------------hhhH
Confidence 99988775 221 22245667789999998877 44443332111110 0000000000 0011
Q ss_pred hhhhhhccCCCCcCCCCc--hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 506 QLFHRFENDGNHVELPWN--KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVN 583 (1093)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 583 (1093)
..+.. .+...|. ...+++++|.++.. +++.+|+..|.+++...|+.. ..+.++.++...|++++|+..|+
T Consensus 462 ~~~~~------al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 462 PAIVR------LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred HHHHH------hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHH
Confidence 11111 1124566 88999999999988 899999999999999999864 46667777889999999999999
Q ss_pred HHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHH
Q 001357 584 EALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKEL 663 (1093)
Q Consensus 584 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~ 663 (1093)
+++...|. ...+..+|.++...|++.+|...|.+++...|. .......++.. .... |++++|+..
T Consensus 534 ka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~-l~~~------------Gr~~eAl~~ 598 (987)
T PRK09782 534 KISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQ-RYIP------------GQPELALND 598 (987)
T ss_pred HHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHH-HHhC------------CCHHHHHHH
Confidence 98777555 456788999999999999999999999998765 33333333333 3334 899999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 664 YTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 664 ~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
|+++++.+|+ ..++.++|.++...|++++|+..|++++...| +++.++.++|.++...|++++|+..|++++..
T Consensus 599 ~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 599 LTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP-----NNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999996 88999999999999999999999999999998 78999999999999999999999999999998
Q ss_pred hcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 001357 744 FYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKF 797 (1093)
Q Consensus 744 ~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 797 (1093)
.|.++.+++.+|.++...|++++|...|++++.+.|++..+.+-.+.+.+..
T Consensus 673 --~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 673 --LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 6677999999999999999999999999999999999999999888875443
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.5e-34 Score=352.14 Aligned_cols=649 Identities=12% Similarity=0.021 Sum_probs=502.3
Q ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhH
Q 001357 26 ASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQRE 105 (1093)
Q Consensus 26 ~~~~~~~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~ 105 (1093)
...+..+|...|.+..+++.+|.+|..+|++++|+..+++++..+|.+ ...+..|+.+ +
T Consensus 64 ~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n---------~~~~~~La~i----~-------- 122 (987)
T PRK09782 64 IREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGD---------ARLERSLAAI----P-------- 122 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc---------HHHHHHHHHh----c--------
Confidence 445566777899999999999999999999999999999999886632 2233334433 3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH--------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001357 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQL--------LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR 177 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~--------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 177 (1093)
++.+|+.+|++++..+|.+..+++.++.. |.+.+....|+. .+.+..+|......+.++.+|..+|+
T Consensus 123 ---~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~d 197 (987)
T PRK09782 123 ---VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQ 197 (987)
T ss_pred ---cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhC
Confidence 34489999999999999999999999998 666655555554 33333334455566777999999999
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHH
Q 001357 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK-LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEK 256 (1093)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~ 256 (1093)
|++|+..+.++++..|.+ ...+..++.+|.. +++ +.|..++...++ .++.++..++..+...|+ .++|...
T Consensus 198 w~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk---~d~~l~~ala~~yi~~G~---~~~A~~~ 269 (987)
T PRK09782 198 WSQADTLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIF---TDPQSRITYATALAYRGE---KARLQHY 269 (987)
T ss_pred HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcc---cCHHHHHHHHHHHHHCCC---HHHHHHH
Confidence 999999999999999999 6778889999988 577 888888775333 788999999999999999 6666655
Q ss_pred HHH---HHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001357 257 MQR---AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1093)
Q Consensus 257 ~~~---al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1093)
+.. +....|.+..-++.++...... ..+..-+.. ...+.....+..++..+...++++-+..+ +.
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 337 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANP---VQALANYTV-----QFADNRQYVVGATLPVLLKEGQYDAAQKL----LA 337 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCch---hhhccchhh-----hhHHHHHHHHHHHHHHHHhccHHHHHHHH----hc
Confidence 554 4444566766666665543221 111111111 00122224455567888888988855544 21
Q ss_pred hcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CH
Q 001357 334 EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR---DA 410 (1093)
Q Consensus 334 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~---~~ 410 (1093)
..|.... ...........+.+.++...+...++..|.+...+..++....+.|++.+|..+|+.+....++ +.
T Consensus 338 ---~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 413 (987)
T PRK09782 338 ---TLPANEM-LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ 413 (987)
T ss_pred ---CCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence 2233322 2222223335588888888888888888999999999999999999999999999999875322 23
Q ss_pred HHHHHHHHHH-hcCC---HH----------------------HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 001357 411 QAFIDLGELL-ISSD---TG----------------------AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464 (1093)
Q Consensus 411 ~~~~~la~~~-~~~~---~~----------------------~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 464 (1093)
.+...++.+| .... .. .+...+..+....+..+....+.+++++|.++.. +++
T Consensus 414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~ 492 (987)
T PRK09782 414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLP 492 (987)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCc
Confidence 3444677776 4433 22 2223333333443322111267899999999987 899
Q ss_pred HHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHH
Q 001357 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 544 (1093)
Q Consensus 465 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 544 (1093)
.+|+..|.+++.. .|.. .....++.++...|++++|
T Consensus 493 ~eAi~a~~~Al~~-------------------------------------------~Pd~-~~~L~lA~al~~~Gr~eeA 528 (987)
T PRK09782 493 GVALYAWLQAEQR-------------------------------------------QPDA-WQHRAVAYQAYQVEDYATA 528 (987)
T ss_pred HHHHHHHHHHHHh-------------------------------------------CCch-HHHHHHHHHHHHCCCHHHH
Confidence 9999999999873 3433 2366678888899999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCC
Q 001357 545 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624 (1093)
Q Consensus 545 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 624 (1093)
+..|++++...|. ...++.+|.++...|++.+|..++.+++..+|.+...+..++......|++++|+..|.+++...|
T Consensus 529 i~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 529 LAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP 607 (987)
T ss_pred HHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 9999998776555 456788899999999999999999999999999988888777777788999999999999999988
Q ss_pred CCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 001357 625 GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEA 704 (1093)
Q Consensus 625 ~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 704 (1093)
. ..++..+|.+ +... |++++|+..|.+++..+|+++.+++++|.++...|++++|+..|+++++.
T Consensus 608 ~--~~a~~~LA~~-l~~l------------G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 608 S--ANAYVARATI-YRQR------------HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred C--HHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 6678889988 8888 99999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCc
Q 001357 705 ASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (1093)
Q Consensus 705 ~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 784 (1093)
.| +++.+++++|.++..+|++++|+..|++++.. .+..+.+....|.+.....++..|.+.+.++..+.|...
T Consensus 673 ~P-----~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 673 LP-----DDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred CC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 98 78999999999999999999999999999998 667789999999999999999999999999999999875
Q ss_pred chhhHHHHH
Q 001357 785 TLRFDAGVA 793 (1093)
Q Consensus 785 ~~~~~la~~ 793 (1093)
+...++-+
T Consensus 746 -a~~~~g~~ 753 (987)
T PRK09782 746 -IGLRSGAM 753 (987)
T ss_pred -hccccchH
Confidence 44444443
No 11
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-34 Score=363.25 Aligned_cols=685 Identities=14% Similarity=0.065 Sum_probs=561.8
Q ss_pred hcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHH
Q 001357 35 AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILAT 114 (1093)
Q Consensus 35 ~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~ 114 (1093)
...++...+..+...|.+.|.+++|..+|..+......+ ....+..+...+...+... .|.
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~--------~~~~~~~ll~~~~~~~~~~-----------~a~ 106 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPV--------DEDAYVALFRLCEWKRAVE-----------EGS 106 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC--------ChhHHHHHHHHHhhCCCHH-----------HHH
Confidence 445667789999999999999999999999987643211 1123444444444444444 788
Q ss_pred HHHHHHHhcCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001357 115 QYYNKASRIDMH-EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1093)
Q Consensus 115 ~~~~~a~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1093)
.++..+++..+. +......+...|.+.|+++.|...|+.+. +.+..+|..+...|.+.|++++|+.+|.++.....
T Consensus 107 ~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~ 183 (857)
T PLN03077 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183 (857)
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 999888877653 34455667778899999999999999875 34678899999999999999999999999987542
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHH
Q 001357 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP-ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1093)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1093)
.....++..+...+...+++..+.+.+..++.... .+...+..|...|.+.|+ +..|...|..+. ..+..+|+
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~---~~~A~~lf~~m~---~~d~~s~n 257 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD---VVSARLVFDRMP---RRDCISWN 257 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC---HHHHHHHHhcCC---CCCcchhH
Confidence 22245566677778888999999999998887542 256678888899999998 999999999764 34668899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 001357 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1093)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1093)
.+...|...|++++|+.+|..+.... . ..+..++..+..++...|+.+.|.+++..+... .......++..+...|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g-~-~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELS-V-DPDLMTITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMY 333 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC-C-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHH
Confidence 99999999999999999999998653 2 334578888889999999999999999999874 2334467789999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-hcCCHHHHH
Q 001357 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELL-ISSDTGAAL 429 (1093)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--p~~~~~~~~la~~~-~~~~~~~A~ 429 (1093)
.+.|++++|..+|+.+.. .+..+|..+...|.+.|++++|+.+|.++.... |+.. .+..+...+ ..|+++.|.
T Consensus 334 ~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGDLDVGV 409 (857)
T ss_pred HhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccchHHHHH
Confidence 999999999999998753 467789999999999999999999999987654 6554 444444555 999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhh
Q 001357 430 DAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFH 509 (1093)
Q Consensus 430 ~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (1093)
.++..+.+. +...+..+++.+...|.+.|++++|..+|.++..
T Consensus 410 ~l~~~~~~~----g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--------------------------------- 452 (857)
T PLN03077 410 KLHELAERK----GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--------------------------------- 452 (857)
T ss_pred HHHHHHHHh----CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---------------------------------
Confidence 999877654 4455678999999999999999999999987643
Q ss_pred hhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 001357 510 RFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (1093)
Q Consensus 510 ~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 589 (1093)
.+..+|..+...|...|+..+|+.+|.+++...+.+..++..+...+...|..+.+..++..+++..
T Consensus 453 -------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 453 -------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred -------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 2456788899999999999999999999987656667888888889999999999999999998876
Q ss_pred -CCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH
Q 001357 590 -GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 668 (1093)
Q Consensus 590 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 668 (1093)
..+..+...+..+|.+.|++++|...|..+ .++..+|..|... |... |+.++|+.+|+++.
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~-~~~~------------G~~~~A~~lf~~M~ 581 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTG-YVAH------------GKGSMAVELFNRMV 581 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHH-HHHc------------CCHHHHHHHHHHHH
Confidence 345567778999999999999999999986 3478889999999 9888 99999999999999
Q ss_pred hhCCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCC
Q 001357 669 VQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN 747 (1093)
Q Consensus 669 ~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 747 (1093)
..... |..+++.+...+.+.|.+++|..+|+.+.+..+- ..+...|..+..+|.+.|++++|.++++++ +..
T Consensus 582 ~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi---~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~ 654 (857)
T PLN03077 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI---TPNLKHYACVVDLLGRAGKLTEAYNFINKM----PIT 654 (857)
T ss_pred HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC---CCchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCC
Confidence 86533 6677888888999999999999999999965531 135678999999999999999999997765 467
Q ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH-HHhhhcCCChHH--HhhhchhhHHHHH
Q 001357 748 TDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA-STLQKTRRTADE--VWHDNTVLRVAEL 824 (1093)
Q Consensus 748 ~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l 824 (1093)
+++.+|..|..+|...|+.+.+....++++++.|++...+..++.+|...+. ....++++.|.+ +.+ +||++|.++
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k-~~g~s~ie~ 733 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV-DPGCSWVEV 733 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC-CCCccEEEE
Confidence 8899999999999999999999999999999999999999999999988776 556666666665 554 899999888
Q ss_pred HHHHHHH
Q 001357 825 ENAVRVF 831 (1093)
Q Consensus 825 ~~a~~~~ 831 (1093)
..-++.|
T Consensus 734 ~~~~~~f 740 (857)
T PLN03077 734 KGKVHAF 740 (857)
T ss_pred CCEEEEE
Confidence 7655554
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=3.9e-31 Score=319.38 Aligned_cols=446 Identities=17% Similarity=0.131 Sum_probs=360.5
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
...+..+|..|+..|+.. +|+..|++++...|+ +..+..+|.+|+..|++++|+..|.+++..+|++.
T Consensus 127 a~~~k~~G~~~~~~~~~~-----------~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~ 194 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFN-----------KAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS 194 (615)
T ss_pred HHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH
Confidence 334556677776666655 999999999999995 77899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1093)
.+++.+|.++...|+|++|+..|..++...+.........+...+ ...+...+..++...|.+...+..++..+.
T Consensus 195 ~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 195 KALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-----KKFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 999999999999999999999998887776655222111111111 134556667777788887777776666543
Q ss_pred HhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcC
Q 001357 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF---FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKG 319 (1093)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 319 (1093)
... ...+...+......+|.....+..++..+. ..+.|++|+..|+.++......|....++..+|.++...|
T Consensus 270 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 270 SFR----PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred Hcc----CCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 221 122233344455556665555555554433 3578999999999999876556778889999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1093)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 399 (1093)
++++|+..|++++. ..|....+++.+|.++...|++++|+.+|++++..+|+++.+++.+|.++...|++++|+..|
T Consensus 346 ~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 346 KHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred CHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998 678888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001357 400 RKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1093)
Q Consensus 400 ~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 478 (1093)
++++.++|++..+++.+|.++ ..|++++|+..|.+++...|. .+.+++.+|.++...|++++|+..|++++...
T Consensus 423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-----APDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 999999999999999999999 999999999999999987655 48899999999999999999999999999853
Q ss_pred hhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHH-HHHHhcCChHHHHHHHHHHHHhcCC
Q 001357 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA-RLLEQIHDTVAASVLYRLILFKYQD 557 (1093)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~~l~~~p~ 557 (1093)
+... .... ....+...+ .++...|++++|+.+|++++..+|+
T Consensus 498 p~~~------------------------------------~~~~-~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 498 KETK------------------------------------PMYM-NVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred Cccc------------------------------------cccc-cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 2100 0001 112223333 3344579999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh
Q 001357 558 YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (1093)
Q Consensus 558 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 594 (1093)
+..++..+|.++...|++++|+.+|++++.+.+....
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999999999999999998876544
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=5e-31 Score=318.49 Aligned_cols=436 Identities=16% Similarity=0.135 Sum_probs=350.0
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
..+..+|..++..|+|++|+..|.+++...|+ +..+..+|.++..+|++++|+..|.+++..+|++ ..+++.+|.+|.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~-~~a~~~~a~a~~ 205 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY-SKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 35668899999999999999999999999995 7789999999999999999999999999999999 778999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH
Q 001357 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288 (1093)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (1093)
.+|++++|+..|..++..++.+......+..... ...+...+..++...|.+...+..++.++... ......
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 277 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLL-------KKFAESKAKEILETKPENLPSVTFVGNYLQSF-RPKPRP 277 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc-cCCcch
Confidence 9999999999998888776654433222211111 12344556666777777766666666654222 111111
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHH---HhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 001357 289 QLTETALAVTNHGPTKSHSYYNLARSY---HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1093)
Q Consensus 289 ~~~~~al~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1093)
..+.... ...+.....+..++..+ ...+.|++|+..|.+++......|....++..+|.++...|++++|+..|
T Consensus 278 ~~~~~~~---~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 278 AGLEDSN---ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred hhhhccc---ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1122111 12233334445555443 33578999999999999743335677788999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001357 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 444 (1093)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1093)
++++..+|.+..++..+|.++...|++++|+..|++++..+|+++.+++.+|.++ ..|++++|+..|++++.+.|.
T Consensus 355 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~--- 431 (615)
T TIGR00990 355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD--- 431 (615)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc---
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999988655
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCch
Q 001357 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (1093)
Q Consensus 445 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 524 (1093)
....+.++|.++...|++++|+..|.+++. ..|..
T Consensus 432 --~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------------------------------------------~~P~~ 466 (615)
T TIGR00990 432 --FIFSHIQLGVTQYKEGSIASSMATFRRCKK-------------------------------------------NFPEA 466 (615)
T ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------------------------------------hCCCC
Confidence 477888999999999999999999999987 45778
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHH------HHHHH-HHHHHcCCHHHHHHHHHHHHHHcCCChhHHH
Q 001357 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA------YLRLA-AIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (1093)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 597 (1093)
+.+++.+|.++...|++++|+..|.+++...|..... +...+ .++...|++++|..++++++.++|++..++.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 8899999999999999999999999999988864322 22222 2334468999999999999999999999999
Q ss_pred HhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 598 MLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
.+|.++...|++++|+..|++++.+.+.
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999887654
No 14
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-30 Score=324.37 Aligned_cols=641 Identities=13% Similarity=0.053 Sum_probs=535.6
Q ss_pred ChhHHHHHHHhc--CCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh
Q 001357 25 DASDILDILKAE--QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK 102 (1093)
Q Consensus 25 ~~~~~~~~l~~e--~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~ 102 (1093)
++..++..+... +.+..+|..+..++...+.+..+..++..++...+.. .+.+.+.|...|.+.|...
T Consensus 69 ~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~n~li~~~~~~g~~~-- 138 (857)
T PLN03077 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL--------GVRLGNAMLSMFVRFGELV-- 138 (857)
T ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCC--------CchHHHHHHHHHHhCCChH--
Confidence 455555555553 3566688889999999999999999999876554321 2346678888899988877
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHH
Q 001357 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD-RDNVPALLGQACVEFNRGRYSDS 181 (1093)
Q Consensus 103 ~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~~~~~~g~~~~A 181 (1093)
.|..+|+++. +.+..+|..+...|.+.|++++|+.+|.++.... ..+...+..+...+...+++..+
T Consensus 139 ---------~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 139 ---------HAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred ---------HHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 8999999885 3467899999999999999999999999998643 33556666677777888999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001357 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1093)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1093)
..++..+++........++..+..+|.+.|+++.|..+|.++.. .+...|..+...|...|+ +.+|+..|.++.
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~---~~eAl~lf~~M~ 280 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGE---CLEGLELFFTMR 280 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCC---HHHHHHHHHHHH
Confidence 99999999876554467788899999999999999999999643 356789999999999999 999999999998
Q ss_pred HhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 001357 262 EIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE 340 (1093)
Q Consensus 262 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 340 (1093)
... ..+..++..+...+...|+.+.+..++..+.... ...+..++..+...|.+.|++++|..+|+.+.. +
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~- 352 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG--FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-----K- 352 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C-
Confidence 753 3456788888899999999999999999988753 234578899999999999999999999998642 2
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q 001357 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLG 417 (1093)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-p~~~~~~~~la 417 (1093)
....|..+...|.+.|++++|+.+|..+.... | +..++..+...+...|+++.|..++..+.+.. ..+..++..+.
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP-DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34679999999999999999999999987653 5 44566777778999999999999999999875 34677888899
Q ss_pred HHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001357 418 ELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (1093)
Q Consensus 418 ~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 496 (1093)
..| ..|++++|...|.++.. .+...|+.+...|...|++++|+.+|.++...
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~--------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~------------------- 484 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPE--------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT------------------- 484 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCC--------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-------------------
Confidence 999 99999999999887532 24568899999999999999999999999752
Q ss_pred hhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHcCCH
Q 001357 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNL 575 (1093)
Q Consensus 497 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~ 575 (1093)
..| +..++..+..++...|..+.+..++..+++... .+...+..+..+|.+.|++
T Consensus 485 -----------------------~~p-d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 485 -----------------------LKP-NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred -----------------------CCC-CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 233 555666777788899999999999999987542 3456677888999999999
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHH
Q 001357 576 QLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEAT 655 (1093)
Q Consensus 576 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~ 655 (1093)
++|...|..+ +.+..+|..+...|.+.|+.++|+..|+++......++..++..+... |... |
T Consensus 541 ~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a-~~~~------------g 603 (857)
T PLN03077 541 NYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRS------------G 603 (857)
T ss_pred HHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH-Hhhc------------C
Confidence 9999999886 567889999999999999999999999999988777788888888888 8888 9
Q ss_pred HHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHH
Q 001357 656 HLEKAKELYTRVIVQHT--SNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733 (1093)
Q Consensus 656 ~~~~A~~~~~~~l~~~p--~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A 733 (1093)
.+++|..+|+.+....+ -+...+..++.+|.+.|++++|..+++++. .. .++.+|..|-..+...|+.+.|
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~------pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-IT------PDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CC------CCHHHHHHHHHHHHHcCChHHH
Confidence 99999999999985432 256789999999999999999999999873 22 3678898888888889999999
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001357 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1093)
Q Consensus 734 ~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~ 779 (1093)
....+++++. .|.++..+..|+.+|...|+|++|.++.+.+...
T Consensus 677 e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 677 ELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 9999999987 6677889999999999999999999999887654
No 15
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=100.00 E-value=9.1e-29 Score=277.47 Aligned_cols=646 Identities=16% Similarity=0.124 Sum_probs=460.0
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1093)
+++|+.++..+++++|.++.+|+.+|.+|-++|+.++++.+.-.+-.++|++...|..++.....+|++..|.-+|.+++
T Consensus 155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI 234 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI 234 (895)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----HHH-HHHHHHHHHHhhhHHhHHHHHHHHHHHHHh-
Q 001357 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN----VEA-LVALAVMDLQANEAAGIRKGMEKMQRAFEI- 263 (1093)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a-~~~la~~~~~~~~~~~~~~Al~~~~~al~~- 263 (1093)
+.+|.+ ....+..+.+|.++|+...|...|.+++.+.|.. ... -...+..+...++ -+.|++.+..++..
T Consensus 235 ~~~p~n-~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 235 QANPSN-WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RERAAKALEGALSKE 310 (895)
T ss_pred hcCCcc-hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHhhc
Confidence 999999 6778889999999999999999999999999921 111 2223445555555 58888888888873
Q ss_pred -CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------------c---cCCCCCchHH-HHHHHHHHH
Q 001357 264 -YPYCAMALNYLANHFFFTGQHFLVEQLTETALA----------------------V---TNHGPTKSHS-YYNLARSYH 316 (1093)
Q Consensus 264 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------~---~~~~~~~~~~-~~~la~~~~ 316 (1093)
+-.....++.++.+|.....++.+......... . ....+.+..+ ...++.+..
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 333456778899999999999999888776654 0 0111111222 445555555
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHH
Q 001357 317 SKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD-NCETLKALGHIYVQLGQIEKA 395 (1093)
Q Consensus 317 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A 395 (1093)
..++..+++..+..--. -...+.+..++.++.+|...|++.+|+.+|..+....+. +..+|+.+|.||..+|.++.|
T Consensus 391 ~~~e~~e~ll~~l~~~n--~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDN--VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccchHHHHHHHHHHhc--CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 55666666655543321 124566778999999999999999999999999886543 467999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH----HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 396 QELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL----KKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (1093)
Q Consensus 396 ~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 470 (1093)
+..|.+++...|++.++.+.|+.++ .+|++++|++.+.....-. +.........+......++...|+.++=+..
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999999999999999 9999999999888754211 1111122356778889999999999886655
Q ss_pred HHHHHhcchhhhhccccc-c--hhhhhh----hhhHHHhh---------h-hhhhhhhccC--CCCcCCCCchH----HH
Q 001357 471 FKDALGDGIWLTLLDSKT-K--TYVIDA----SASMLQFK---------D-MQLFHRFEND--GNHVELPWNKV----TV 527 (1093)
Q Consensus 471 ~~~al~~~~~~~~~~~~~-~--~~~~~~----~~~~~~~~---------~-~~~~~~l~~~--~~~~~~~~~~~----~~ 527 (1093)
...++........+-+.. + ...... ..+..... + ...-..+... ........... ..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 555554322211111100 0 000000 00000000 0 0000000000 00001111122 34
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcC----Ch-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----cCCChhHH
Q 001357 528 LFNLARLLEQIHDTVAASVLYRLILFKYQ----DY-V-DAYLRLAAIAKARNNLQLSIELVNEALKV-----NGKYPNAL 596 (1093)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p----~~-~-~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 596 (1093)
...+..++.+.+++.+|..+...++.... .. . ..-+....+.+..+++..|..++..++.. +|..+.+|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 44557778899999999999888876332 11 1 22233344566788999999999998887 55555566
Q ss_pred HHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHH
Q 001357 597 SMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676 (1093)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 676 (1093)
...-.+....++-.--.+.+..++...+..++...+..|.. .+.. +.+..|+..|.++...+|++|.
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~-~~~~------------~s~~~Al~~y~ra~~~~pd~Pl 775 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHN-LFVN------------ASFKHALQEYMRAFRQNPDSPL 775 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechh-Hhhc------------cchHHHHHHHHHHHHhCCCCcH
Confidence 64444444455544444555555555555445555555666 6666 8899999999999999999988
Q ss_pred HHHHHHHHHHhcC----------CchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcC
Q 001357 677 AANGAGVVLAEKG----------QFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (1093)
Q Consensus 677 a~~~la~~~~~~g----------~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 746 (1093)
.-..+|..+.+.. ..-+++.++.+..++.... ....+.+|+|.+|...|-..-|+.+|+++|...|.
T Consensus 776 ~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~---~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~ 852 (895)
T KOG2076|consen 776 INLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCE---EKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPK 852 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcc
Confidence 8777777766431 3456777777776665321 36789999999999999999999999999987432
Q ss_pred C--------CC--HHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 001357 747 N--------TD--AQILLYLARTHYEAEQWQDCKKSLLRAI 777 (1093)
Q Consensus 747 ~--------~~--~~~l~~la~~~~~~g~~~~A~~~~~~al 777 (1093)
+ .+ -.+-++|..+|..+|+...|.+++.+-+
T Consensus 853 ~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 853 DVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred ccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhhc
Confidence 1 11 5677889999999999999998887643
No 16
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=1.1e-26 Score=249.79 Aligned_cols=599 Identities=16% Similarity=0.134 Sum_probs=423.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
-++..+|..++....+.||.+|..|+.-|.+--..|++..|..+..+-.+..|.+...|+.-+ ++...+.|..+..
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 456779999999999999999999999999999999999999999999999999888887754 3455566666666
Q ss_pred HHHHhCCCChHHHHHHHHH---------------------------HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 187 RALQVHPSCPGAIRLGIGL---------------------------CRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~---------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
.+++..|.+ +.+|+..+. .-..+.+.+.|+-.+.++++..|.+.+.|+.|+.
T Consensus 340 ~Avr~~P~S-v~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAveccp~s~dLwlAlar 418 (913)
T KOG0495|consen 340 NAVRFLPTS-VRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECCPQSMDLWLALAR 418 (913)
T ss_pred HHHHhCCCC-hhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 777766666 444433222 2233445556777777777777777777766665
Q ss_pred HHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC--CCCchHHHHHHHHHHHh
Q 001357 240 MDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH--GPTKSHSYYNLARSYHS 317 (1093)
Q Consensus 240 ~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~la~~~~~ 317 (1093)
+. .|..|...+.++-+.-|.++.+|..-+.+--..|+.+.+.++..+.+..... ...+-+.|+.-+..+..
T Consensus 419 Le-------tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 419 LE-------TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HH-------HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 42 2666777777777777777777777777777777777777777776643222 22344667777777777
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001357 318 KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1093)
Q Consensus 318 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1093)
.|..-.+..+....+...-...+.-..|+.-++.+.+.+.++-|+.+|..+++.+|....+|...+.+--..|..+.-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 77766666666666554334455556677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 398 LLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 398 ~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 476 (1093)
+|++++...|.....|+..+..+ ..|+...|..++..+....|+ +.+++.....+.+...+++.|..+|.++..
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-----seeiwlaavKle~en~e~eraR~llakar~ 646 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-----SEEIWLAAVKLEFENDELERARDLLAKARS 646 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-----cHHHHHHHHHHhhccccHHHHHHHHHHHhc
Confidence 77777777777777777777777 777777777777777766544 366777777777777777777777777765
Q ss_pred cchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 001357 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (1093)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (1093)
.. ....+|+.-+.+...+++.++|+.+++.+++.+|
T Consensus 647 ~s--------------------------------------------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 647 IS--------------------------------------------GTERVWMKSANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred cC--------------------------------------------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 32 2456666667777777777777777777777777
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHh
Q 001357 557 DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGN 636 (1093)
Q Consensus 557 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~ 636 (1093)
++...|+.+|.++...++.+.|...|...++..|.++.+|..++.+-.+.|....|...|.++.-.+|. +...++....
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir 761 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIR 761 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777777777766 3333332222
Q ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhH
Q 001357 637 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716 (1093)
Q Consensus 637 ~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 716 (1093)
+ =+.. |..+.|..+..++|+..|++...|..-..+.-+-++-..++..+++. . .++.+
T Consensus 762 ~-ElR~------------gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc----e-----~dphV 819 (913)
T KOG0495|consen 762 M-ELRA------------GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC----E-----HDPHV 819 (913)
T ss_pred H-HHHc------------CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc----c-----CCchh
Confidence 2 2222 77777777777777777777766666555555555544444444333 2 46777
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHH
Q 001357 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (1093)
Q Consensus 717 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la 791 (1093)
++..|.++....+++.|.+.|.++++.. +....+|.++-..+...|.-++-.++|.+.....|.....+..++
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 7777777777777888888888877773 333445555556677777777777777777777777655554443
No 17
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=100.00 E-value=3.7e-27 Score=264.62 Aligned_cols=634 Identities=18% Similarity=0.196 Sum_probs=458.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHH
Q 001357 40 LDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNK 119 (1093)
Q Consensus 40 ~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~ 119 (1093)
+.-.+..|+..+-+|++++|..++.+++..+|. ....+.+||.+|-.+|+.+ ++....-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~---------~~~ay~tL~~IyEqrGd~e-----------K~l~~~ll 198 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPR---------NPIAYYTLGEIYEQRGDIE-----------KALNFWLL 198 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc---------chhhHHHHHHHHHHcccHH-----------HHHHHHHH
Confidence 557889999999999999999999999887663 3567899999999999888 89999999
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----
Q 001357 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---- 195 (1093)
Q Consensus 120 a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---- 195 (1093)
|..++|.+...|..++.....+|++.+|.-+|.++++.+|.+.......+.+|.+.|++..|...|.+++...|..
T Consensus 199 AAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 199 AAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred HHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999943
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH-----------
Q 001357 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE----------- 262 (1093)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~----------- 262 (1093)
....-...+..+...++.+.|++.++.++.... ...+.+..++.+++.... ++.++..+.....
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q---~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ---SDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH---HHHhhHHHHHHhccccCCChhhhh
Confidence 123334567788888888999999999988322 234456677777777766 7777776655544
Q ss_pred -----------hC------CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHH
Q 001357 263 -----------IY------PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAG 325 (1093)
Q Consensus 263 -----------~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 325 (1093)
+. +.+..+ ..+..++......+....+..............+..++.++.+|...|+|..|+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred hhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 10 111122 233334444444443333333333322224556789999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 326 LYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 326 ~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 405 (1093)
.+|..++.. .......+|+.+|.||...|.++.|+.+|++++...|++.++...|+.++.++|++++|++.+.....-
T Consensus 435 ~~l~~i~~~--~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 435 RLLSPITNR--EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred HHHHHHhcC--ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 999999863 223346689999999999999999999999999999999999999999999999999999999987633
Q ss_pred CCC---------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhc----------------C--CC------------
Q 001357 406 DPR---------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKA----------------G--EE------------ 445 (1093)
Q Consensus 406 ~p~---------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~----------------~--~~------------ 445 (1093)
++. ..........++ ..|+.++-+.....++..+... + ..
T Consensus 513 D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~ 592 (895)
T KOG2076|consen 513 DGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRA 592 (895)
T ss_pred CccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHH
Confidence 211 233445555666 7777666444333322211000 0 00
Q ss_pred ---------------------------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhh
Q 001357 446 ---------------------------VP----IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVID 494 (1093)
Q Consensus 446 ---------------------------~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 494 (1093)
.. .+++..+..++.+.+.+.+|+.+...++....
T Consensus 593 ~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~--------------- 657 (895)
T KOG2076|consen 593 REKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYI--------------- 657 (895)
T ss_pred HhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh---------------
Confidence 00 12222233444455555555555555544210
Q ss_pred hhhhHHHhhhhhhhhhhccCCCCcCCCCchH-HHHHHHHHHHHhcCChHHHHHHHHHHHHh-----cCChHHHHHHHHHH
Q 001357 495 ASASMLQFKDMQLFHRFENDGNHVELPWNKV-TVLFNLARLLEQIHDTVAASVLYRLILFK-----YQDYVDAYLRLAAI 568 (1093)
Q Consensus 495 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~ 568 (1093)
....+... ..-+....+-...+++..|..+++.++.. +|.....|+..-..
T Consensus 658 -----------------------f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~ 714 (895)
T KOG2076|consen 658 -----------------------FFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSY 714 (895)
T ss_pred -----------------------hhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 00111222 33334445566779999999999999887 55555555533334
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCC-hhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcc
Q 001357 569 AKARNNLQLSIELVNEALKVNGKY-PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 647 (1093)
Q Consensus 569 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~ 647 (1093)
....++-.--..++..++..+|.+ +......|..++..+.|..|+..|-++....|. ++...+.+|.. |...+..
T Consensus 715 ~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd-~Pl~nl~lgla-fih~a~q-- 790 (895)
T KOG2076|consen 715 FSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD-SPLINLCLGLA-FIHLALQ-- 790 (895)
T ss_pred HHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC-CcHHHHHHHHH-HHHHHHH--
Confidence 444444444455566666677777 667778899999999999999999999999887 55555566766 6554221
Q ss_pred cCchHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCC-------CCchhHHH
Q 001357 648 RAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-------VQMPDVWI 718 (1093)
Q Consensus 648 ~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~~~~~ 718 (1093)
+....+.-..-+++.++.+..++.-. ...+.+++|.+|-..|-..-|+.+|+++++..|.+.. .-.-.+-+
T Consensus 791 r~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~ 870 (895)
T KOG2076|consen 791 RRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAY 870 (895)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHh
Confidence 11111224566778888777766655 7789999999999999999999999999999764321 11345778
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Q 001357 719 NLAHVYFAQGNFALAMKMYQNCL 741 (1093)
Q Consensus 719 ~lg~~~~~~g~~~~A~~~~~~al 741 (1093)
||..||...|+...|..++.+.+
T Consensus 871 NL~LIY~~SGn~~lArqil~kyl 893 (895)
T KOG2076|consen 871 NLHLIYKKSGNMQLARQILEKYL 893 (895)
T ss_pred hhhhhhccCCcHHHHHHHHHhhc
Confidence 99999999999999999977654
No 18
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.3e-28 Score=258.12 Aligned_cols=566 Identities=14% Similarity=0.105 Sum_probs=355.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q 001357 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1093)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1093)
...+...|+|++|.+...+++... |.+..+++....++.+.+.|++|+.+.+.-.. ........+..++|.++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~---pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~----~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV---PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA----LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC---CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch----hhhcchhhHHHHHHHHH
Confidence 344556677777777777777544 56667888888888888999998855544331 01111223788999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001357 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT 434 (1093)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~ 434 (1093)
.+..++|+.++. ..++.+..++...|++++++|+|++|+.+|+.+++.+.++.+.......+-.. .+... +
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~--~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQV--Q 162 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhH--H
Confidence 999999999998 34566778999999999999999999999999988876665554433332200 00000 0
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccC
Q 001357 435 ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEND 514 (1093)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 514 (1093)
.++..+.. .....+.++|.++++...|+|.+|++.+.+++.+|...-..+...
T Consensus 163 ~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~-------------------------- 215 (652)
T KOG2376|consen 163 LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN-------------------------- 215 (652)
T ss_pred HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc--------------------------
Confidence 12222221 123578999999999999999999999999988764221111100
Q ss_pred CCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc----CCHH-HHHHHHHHHHHHc
Q 001357 515 GNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQ-LSIELVNEALKVN 589 (1093)
Q Consensus 515 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~-~A~~~~~~al~~~ 589 (1093)
.-++......+...++.++..+|+..+|..+|..++..+|.+........+.+... .-++ .++..++......
T Consensus 216 --eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l 293 (652)
T KOG2376|consen 216 --EEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKL 293 (652)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHh
Confidence 01122345678899999999999999999999999998887643333322222211 1111 1222222211111
Q ss_pred CC----------ChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHH
Q 001357 590 GK----------YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK 659 (1093)
Q Consensus 590 p~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~ 659 (1093)
++ -..++.+.+.+.+..+..+.+.+.....-...|.....++ +-.. +... ...+.+
T Consensus 294 ~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~l--l~~~-t~~~-----------~~~~~k 359 (652)
T KOG2376|consen 294 AEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPIL--LQEA-TKVR-----------EKKHKK 359 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHH--HHHH-HHHH-----------HHHHhh
Confidence 11 1235566677777777777777666554444443222222 1111 1111 146889
Q ss_pred HHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCC--CCCCchhHHHHHHHHHHHhcCHHHHHHH
Q 001357 660 AKELYTRVIVQHTSN-LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGS--VFVQMPDVWINLAHVYFAQGNFALAMKM 736 (1093)
Q Consensus 660 A~~~~~~~l~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 736 (1093)
|..++......+|.+ ......++++.+.+|++..|+.++..+++....+ .....|.+...+-..|...+..+.|...
T Consensus 360 a~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~v 439 (652)
T KOG2376|consen 360 AIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAV 439 (652)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHH
Confidence 999999999999997 7788899999999999999999999444221100 0013455555666678888888889999
Q ss_pred HHHHHHhhcCCCC-----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHhhhcCCChHH
Q 001357 737 YQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKTRRTADE 811 (1093)
Q Consensus 737 ~~~al~~~~~~~~-----~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~~~~~~~~~~~~~~ 811 (1093)
+..++..|..... -.++..++....+.|+-++|...++++++.+|+|..+...+..+|.......-....+.+.
T Consensus 440 l~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k~L~- 518 (652)
T KOG2376|consen 440 LDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLSKKLP- 518 (652)
T ss_pred HHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHhhcCC-
Confidence 9999988754433 3445566777778899999999999999999999888877776665544321111111111
Q ss_pred HhhhchhhHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001357 812 VWHDNTVLRVAELENAVRVFSHLSAASNLHLHGFDEKKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALA 891 (1093)
Q Consensus 812 ~~~~~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 891 (1093)
+...+. ++++-......+..+..++.. .+. .+ .
T Consensus 519 --------p~~~l~-~vdVd~LE~s~ga~~~~~~k~---------------ta~---------------S~--------~ 551 (652)
T KOG2376|consen 519 --------PLKGLK-AVDVDALEKSDGAKYSEAYKK---------------TAV---------------SQ--------V 551 (652)
T ss_pred --------Ccccch-hcCchHhhhccCcchhhhhcc---------------ccc---------------cc--------h
Confidence 122222 344433333322211100000 000 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-----hhcChhhhhhhccC-CCCcccc
Q 001357 892 EEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQW-----RSSTPASKRRERSE-NDDDEVG 953 (1093)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-----~~~~~~~~~~~~~~-~~~~~~~ 953 (1093)
++++... ...++++.++-+.|+.|.+..+|||||| ||+||||+||++++ .-.||||
T Consensus 552 ~~~~~~~------~kKKk~rKrkgk~pknyn~~~tPDPERWLP~reRS~yr~KrK~k~~~~~kgtQG~ 613 (652)
T KOG2376|consen 552 EEKKSKE------LKKKKKRKRKGKLPKNYNPKVTPDPERWLPRRERSTYRPKRKGKRAAIIKGTQGG 613 (652)
T ss_pred hhccchh------hhhhcccccccCCcccCCCCCCCChhhcccchhccccCcccccchhhhhcccccc
Confidence 0000000 0111234555579999999999999999 99999998877743 3457887
No 19
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.97 E-value=2.6e-24 Score=231.53 Aligned_cols=596 Identities=13% Similarity=0.101 Sum_probs=498.5
Q ss_pred hcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHH
Q 001357 35 AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILAT 114 (1093)
Q Consensus 35 ~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~ 114 (1093)
..|..+..|+.-|+.--..|++.-|..++.++.+..+.. + .+++..-++. ..+.|.
T Consensus 280 tnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprS-------e---------DvWLeaiRLh--------p~d~aK 335 (913)
T KOG0495|consen 280 TNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRS-------E---------DVWLEAIRLH--------PPDVAK 335 (913)
T ss_pred cCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCch-------H---------HHHHHHHhcC--------ChHHHH
Confidence 466778899999999999999999999999998876532 1 1122222222 112578
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001357 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1093)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1093)
.+...+++..|+++..|+..+.+-. +...=..+++++++..|++...|-.. ....+.+.|.-++.++.+..|.
T Consensus 336 ~vvA~Avr~~P~Sv~lW~kA~dLE~---~~~~K~RVlRKALe~iP~sv~LWKaA----VelE~~~darilL~rAveccp~ 408 (913)
T KOG0495|consen 336 TVVANAVRFLPTSVRLWLKAADLES---DTKNKKRVLRKALEHIPRSVRLWKAA----VELEEPEDARILLERAVECCPQ 408 (913)
T ss_pred HHHHHHHHhCCCChhhhhhHHhhhh---HHHHHHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHHHHHHHHhccc
Confidence 8888999999999999998776643 34445678999999999998877543 4567778899999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh---C--CCcHH
Q 001357 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI---Y--PYCAM 269 (1093)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~---~--p~~~~ 269 (1093)
+ ..+|+ +|.++.-|+.|..++.++-+.-|.+...|..-+.+--..|+ ...-...+.+.+.. + .-+..
T Consensus 409 s-~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn---~~mv~kii~rgl~~L~~ngv~i~rd 480 (913)
T KOG0495|consen 409 S-MDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGN---VDMVEKIIDRGLSELQANGVEINRD 480 (913)
T ss_pred h-HHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHhhcceeecHH
Confidence 8 55554 45566779999999999999999999999999999999998 55555555554432 2 22456
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHH
Q 001357 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1093)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1093)
.|..-|..+-..|..--+..+....+...-........|..-+..+...+.++-|..+|..+++. .|..-..|...+
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv---fp~k~slWlra~ 557 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV---FPCKKSLWLRAA 557 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh---ccchhHHHHHHH
Confidence 77777888878888888888888888776666777789999999999999999999999999984 455667788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHH
Q 001357 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAA 428 (1093)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A 428 (1093)
..-..-|..+.-..+|++++...|.....|...+..+...|+...|..++..++..+|++..+|+.-..+. ....++.|
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999888888 88999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhh
Q 001357 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 508 (1093)
Q Consensus 429 ~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1093)
..+|.++....+ ...+|+.-+.+...+++.++|+.+++++++
T Consensus 638 R~llakar~~sg------TeRv~mKs~~~er~ld~~eeA~rllEe~lk-------------------------------- 679 (913)
T KOG0495|consen 638 RDLLAKARSISG------TERVWMKSANLERYLDNVEEALRLLEEALK-------------------------------- 679 (913)
T ss_pred HHHHHHHhccCC------cchhhHHHhHHHHHhhhHHHHHHHHHHHHH--------------------------------
Confidence 999999877433 367888889999999999999999999998
Q ss_pred hhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001357 509 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV 588 (1093)
Q Consensus 509 ~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (1093)
..|....+|..+|.++..+++.+.|...|...++.+|..+..|+.|+.+-...|+.-.|..++.++.-.
T Consensus 680 -----------~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 680 -----------SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred -----------hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH
Q 001357 589 NGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI 668 (1093)
Q Consensus 589 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 668 (1093)
+|.+..+|.....+.++.|+.+.|...+.++++..|++.. .+ ...+ ++.. +. ++-. .+..++
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~-LW--aEaI-~le~-~~---------~rkT----ks~DAL 810 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL-LW--AEAI-WLEP-RP---------QRKT----KSIDAL 810 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch-hH--HHHH-Hhcc-Cc---------ccch----HHHHHH
Confidence 9999999999999999999999999999999999987322 22 1122 2221 11 2222 234455
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 001357 669 VQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1093)
Q Consensus 669 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 744 (1093)
+....|+..+..+|.++....++++|..+|.+++...| +..++|..+-..+...|.-++-.++|.+|..--
T Consensus 811 kkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~-----d~GD~wa~fykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 811 KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP-----DNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----ccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 55677889999999999999999999999999999998 788899988889999999999999999988763
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=1.1e-26 Score=285.14 Aligned_cols=435 Identities=13% Similarity=0.028 Sum_probs=327.1
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001357 114 TQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1093)
Q Consensus 114 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1093)
+..+.. ....|.++........++...|++++|+..+.++...+|....++..+|.++...|++.+|+.+|++++...|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344555 4556777777777888888999999999999999888888888899999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1093)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1093)
.+ +.+++.++.++...|++++|+..+++++...|++.. +..+|.++...|+ +.+|+..+++++...|+++.++..
T Consensus 81 ~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~---~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 81 QN-DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGR---HWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 98 667888999999999999999999999999999999 9999999999888 899999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccCC-CCCchHHHHHHHHHHHh-----cCCH---HHHHHHHHHHHHhcCCCCCch--
Q 001357 274 LANHFFFTGQHFLVEQLTETALAVTNH-GPTKSHSYYNLARSYHS-----KGDY---EKAGLYYMASVKEINKPHEFI-- 342 (1093)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~-----~g~~---~~A~~~~~~al~~~~~~~~~~-- 342 (1093)
++.++...+..+.|+..++.+...... ..........+.+.+.. .+++ ++|+..|+.++...+..|...
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 999999999999898888766531100 00001122223333322 2334 788889998887544444332
Q ss_pred --hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 001357 343 --FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD----AQAFID 415 (1093)
Q Consensus 343 --~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~----~~~~~~ 415 (1093)
.+.+.....++..|++++|+..|+++++..|..+ .+...+|.+|...|++++|+.+|++++..+|.+ ......
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 2222222344677999999999999988764322 344446889999999999999999998887765 355666
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHHHHhcC--------CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhc
Q 001357 416 LGELL-ISSDTGAALDAFKTARTLLKKAG--------EEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLL 484 (1093)
Q Consensus 416 la~~~-~~~~~~~A~~~~~~a~~~~~~~~--------~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 484 (1093)
++.++ ..+++++|+..+..+....|... .+. ...++..++.++...|++++|+..|++++.
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-------- 387 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-------- 387 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Confidence 77777 88999999999888877654210 001 134556677777777777777777777776
Q ss_pred ccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHH
Q 001357 485 DSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR 564 (1093)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 564 (1093)
..|.+..+++.+|.++...|++++|+..+++++..+|++..+++.
T Consensus 388 -----------------------------------~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~ 432 (765)
T PRK10049 388 -----------------------------------NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE 432 (765)
T ss_pred -----------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 456667777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHH
Q 001357 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALS 597 (1093)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 597 (1093)
++.++...|++++|...++++++..|+++.+..
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 777777777777777777777777777775443
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=6.1e-26 Score=272.51 Aligned_cols=323 Identities=11% Similarity=0.012 Sum_probs=298.6
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
++.+|+.++..++...|.++.+++.+|.+.+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++
T Consensus 57 ~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 57 ETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred CcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC-Cc
Q 001357 189 LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YC 267 (1093)
Q Consensus 189 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p-~~ 267 (1093)
+..+|.+ ..++..+|.++...|++++|+..+.+++...|++..++..++. +...|+ +.+|+..+.+++..+| ..
T Consensus 137 l~l~P~~-~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~---~~eA~~~~~~~l~~~~~~~ 211 (656)
T PRK15174 137 WLAFSGN-SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSR---LPEDHDLARALLPFFALER 211 (656)
T ss_pred HHhCCCc-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCC---HHHHHHHHHHHHhcCCCcc
Confidence 9999999 7789999999999999999999999999999999988877644 677788 9999999999999876 34
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHH----HHHHHHHHHHhcCCCCCchh
Q 001357 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK----AGLYYMASVKEINKPHEFIF 343 (1093)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~ 343 (1093)
......++.++...|++++|+..+.+++... |..+.+++.+|.++...|++++ |+..|++++. ..|+...
T Consensus 212 ~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~ 285 (656)
T PRK15174 212 QESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVR 285 (656)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHH
Confidence 4455667889999999999999999999754 6778999999999999999986 8999999998 5678889
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hc
Q 001357 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-IS 422 (1093)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~ 422 (1093)
++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++++|+..|.+++..+|.+...+..++.++ ..
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988787788888 99
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 001357 423 SDTGAALDAFKTARTLLKKA 442 (1093)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~ 442 (1093)
|++++|+..|++++...|..
T Consensus 366 G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 366 GKTSEAESVFEHYIQARASH 385 (656)
T ss_pred CCHHHHHHHHHHHHHhChhh
Confidence 99999999999999987764
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=1.3e-25 Score=275.69 Aligned_cols=409 Identities=12% Similarity=0.002 Sum_probs=341.0
Q ss_pred HHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001357 87 NALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL 166 (1093)
Q Consensus 87 ~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 166 (1093)
.....+....|... +|+..+.++...+|....++..+|.++...|++++|+.+|++++..+|.++.++.
T Consensus 19 ~d~~~ia~~~g~~~-----------~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 19 ADWLQIALWAGQDA-----------EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred HHHHHHHHHcCCHH-----------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 33445556666655 8999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
.++.++...|++.+|+..+++++...|++ .. ++.+|.++...|++++|+..|++++...|++..++..++.++...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~~-~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPDK-AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999 55 89999999999999999999999999999999999999999988887
Q ss_pred HHhHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH-----HcCCh---HHHHHHHHHHHhccCCCCCc----hHHHH
Q 001357 247 AAGIRKGMEKMQRAFEIYPYCAM-----ALNYLANHFF-----FTGQH---FLVEQLTETALAVTNHGPTK----SHSYY 309 (1093)
Q Consensus 247 ~~~~~~Al~~~~~al~~~p~~~~-----~~~~la~~~~-----~~g~~---~~A~~~~~~al~~~~~~~~~----~~~~~ 309 (1093)
.+.|+..+.++.. .|.... ....+..+.. ..+++ ++|+..++.++...+..|.. ..+.+
T Consensus 166 ---~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 166 ---SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ---hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 8889999987765 554211 1122222222 22334 67888888888664444432 22233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHH
Q 001357 310 NLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN----CETLKALGHI 385 (1093)
Q Consensus 310 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~ 385 (1093)
.....+...|++++|+..|++++...+..|.. +...+|.+|+..|++++|+.+|++++...|.+ ......++.+
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a 319 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPW--AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS 319 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH
Confidence 32334567899999999999998742222443 34446899999999999999999999888765 4567778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 001357 386 YVQLGQIEKAQELLRKAAKIDPR---------------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIE 449 (1093)
Q Consensus 386 ~~~~g~~~~A~~~l~~~l~~~p~---------------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 449 (1093)
+...|++++|+.++.++....|. ...++..++.++ ..|++++|+..+++++...|. .+.
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-----n~~ 394 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-----NQG 394 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHH
Confidence 99999999999999999988763 245677888888 999999999999999887665 488
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHH
Q 001357 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (1093)
Q Consensus 450 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 529 (1093)
++..+|.++...|++++|+..+++++. ..|++..+++
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~-------------------------------------------l~Pd~~~l~~ 431 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEV-------------------------------------------LEPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-------------------------------------------hCCCChHHHH
Confidence 999999999999999999999999998 6788999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcCChHHHH
Q 001357 530 NLARLLEQIHDTVAASVLYRLILFKYQDYVDAY 562 (1093)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 562 (1093)
.+|.++...|++++|...++.++...|+++.+.
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999999987554
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=1.1e-25 Score=270.37 Aligned_cols=337 Identities=11% Similarity=0.005 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1093)
......+..++..|++.+|+..+...+. ..|....+++.+|.++...|+++.|+..|++++..+|+++.++..+|.+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~---~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVL---TAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHH---hCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3344555566666666666666666666 4555556666666666666677777777776666666666666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 001357 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF 464 (1093)
Q Consensus 386 ~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 464 (1093)
+...|++++|+..|++++.++|++..++..++.++ ..|++++|+..+..+....|. ++..+..++ .+...|++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-----~~~a~~~~~-~l~~~g~~ 193 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-----RGDMIATCL-SFLNKSRL 193 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-----CHHHHHHHH-HHHHcCCH
Confidence 66666777777777666666666666666666666 666666666666655554332 233343332 35666667
Q ss_pred HHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHH
Q 001357 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAA 544 (1093)
Q Consensus 465 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 544 (1093)
++|+..+..++... .+........++.++...|++++|
T Consensus 194 ~eA~~~~~~~l~~~------------------------------------------~~~~~~~~~~l~~~l~~~g~~~eA 231 (656)
T PRK15174 194 PEDHDLARALLPFF------------------------------------------ALERQESAGLAVDTLCAVGKYQEA 231 (656)
T ss_pred HHHHHHHHHHHhcC------------------------------------------CCcchhHHHHHHHHHHHCCCHHHH
Confidence 77766666665521 111222334445666666777777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhh
Q 001357 545 SVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL----SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 620 (1093)
Q Consensus 545 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 620 (1093)
+..|.+++..+|+++.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..|++++
T Consensus 232 ~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 232 IQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777666666666666667766666666664 5666677777777666666677777777777777777777666
Q ss_pred hcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHH
Q 001357 621 DATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 700 (1093)
Q Consensus 621 ~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 700 (1093)
...|. +..++..+|.+ |... |++++|+..|.+++..+|.+..+...+|.++...|++++|+..|++
T Consensus 312 ~l~P~-~~~a~~~La~~-l~~~------------G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 312 ATHPD-LPYVRAMYARA-LRQV------------GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HhCCC-CHHHHHHHHHH-HHHC------------CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66655 45555566666 6665 6667777777777766666665555566666666777777777777
Q ss_pred HHHHhcC
Q 001357 701 VQEAASG 707 (1093)
Q Consensus 701 ~~~~~p~ 707 (1093)
+++..|.
T Consensus 378 al~~~P~ 384 (656)
T PRK15174 378 YIQARAS 384 (656)
T ss_pred HHHhChh
Confidence 7666663
No 24
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.96 E-value=6.9e-23 Score=252.06 Aligned_cols=420 Identities=11% Similarity=0.026 Sum_probs=228.6
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001357 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEAD--RDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1093)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1093)
++.+++....-.+ +...++..-..+++.|++.+|+.+|+.+...+ +.+...+..+...+...|...+|+.+|..+..
T Consensus 356 ~~~~~~~~~~~~~-~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~ 434 (1060)
T PLN03218 356 SLAAYNGGVSGKR-KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN 434 (1060)
T ss_pred hHHHhccccCCCC-CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 3444444433322 23334444444555666666666666665443 22233333344445555666666666555432
Q ss_pred hCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC-CcH
Q 001357 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP-YCA 268 (1093)
Q Consensus 191 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p-~~~ 268 (1093)
|+ ...|..+..+|.+.|+++.|..+|..+.+.... +...+..+...|...|+ ++.|...|..+..... .+.
T Consensus 435 --pd--~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~---vd~A~~vf~eM~~~Gv~Pdv 507 (1060)
T PLN03218 435 --PT--LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK---VDAMFEVFHEMVNAGVEANV 507 (1060)
T ss_pred --CC--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCH
Confidence 32 344555555556666666666666666554322 44555556666666665 6666666666655432 245
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCCCCchhhHHH
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE-INKPHEFIFPYYG 347 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~ 347 (1093)
.+|+.+...|.+.|++++|..+|..+.... . ..+..+|..+...|.+.|++++|..+|..+... .+..|+ ...|..
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~G-v-~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTyna 584 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKN-V-KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHH
Confidence 566666666666666666666666655432 1 123455666666666666666666666666532 111222 344555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCC
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSD 424 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-p~~~~~~~~la~~~-~~~~ 424 (1093)
+..+|.+.|++++|..+|+.+.+.. +.+..+|..+...|.+.|++++|+.+|.++.... ..+..+|..+...+ ..|+
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 6666666666666666666665543 3345566666666666666666666666665542 11344555555555 6666
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhh
Q 001357 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (1093)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1093)
+++|..++..+.+. +...+..+++.+...|.+.|++++|..+|..+...+
T Consensus 665 ~eeA~~l~~eM~k~----G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-------------------------- 714 (1060)
T PLN03218 665 LDKAFEILQDARKQ----GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-------------------------- 714 (1060)
T ss_pred HHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------------------------
Confidence 66666666554432 333445566666666666666666666666655421
Q ss_pred hhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVN 583 (1093)
Q Consensus 505 ~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 583 (1093)
..| +..+|..+...|.+.|++++|..+|..+.... ..+..+|..+...+...|+++.|..++.
T Consensus 715 ---------------~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 715 ---------------LRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred ---------------CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 122 34556666666666666666666666655421 1223455555566666666666666666
Q ss_pred HHHHHc
Q 001357 584 EALKVN 589 (1093)
Q Consensus 584 ~al~~~ 589 (1093)
.+++..
T Consensus 779 ~M~k~G 784 (1060)
T PLN03218 779 QAKEDG 784 (1060)
T ss_pred HHHHcC
Confidence 665543
No 25
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-24 Score=226.97 Aligned_cols=425 Identities=16% Similarity=0.174 Sum_probs=250.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1093)
.++-..|.-+++.|+|++|+++|.+++.+.|+. +..|.+++.||..+|++++.++...++++++|+.+.+++..+..+.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e-piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE-PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC-chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 345567777788888888888888888888876 5567778888888888888888888888888888888888888887
Q ss_pred HhhhHHhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCH
Q 001357 243 QANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDY 321 (1093)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 321 (1093)
..|+ +.+|+....-..-+. -.+..+...+-.++-.+ +..-.+.-++. ...|..+.+.+.-.
T Consensus 195 ~lg~---~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~-----a~~ka~e~~k~-nr~p~lPS~~fi~s--------- 256 (606)
T KOG0547|consen 195 QLGK---FDEALFDVTVLCILEGFQNASIEPMAERVLKKQ-----AMKKAKEKLKE-NRPPVLPSATFIAS--------- 256 (606)
T ss_pred hhcc---HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH-----HHHHHHHhhcc-cCCCCCCcHHHHHH---------
Confidence 7777 666665443221110 01111110111111110 11111111110 11122111111100
Q ss_pred HHHHHHHHHHHH-----hcCCCCCchhhHHHHHHHHHHcC---CHHHHHHHHHHHHHhC----CCc---------HHHHH
Q 001357 322 EKAGLYYMASVK-----EINKPHEFIFPYYGLGQVQLKLG---DFRSALTNFEKVLEIY----PDN---------CETLK 380 (1093)
Q Consensus 322 ~~A~~~~~~al~-----~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~----p~~---------~~~~~ 380 (1093)
|-.... ......+...+-..-+.-....+ .|..|...+.+..... ..+ ..++.
T Consensus 257 ------yf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~ 330 (606)
T KOG0547|consen 257 ------YFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALL 330 (606)
T ss_pred ------HHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHH
Confidence 000000 00000000011111111111111 3444444443332211 001 34455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 001357 381 ALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE 460 (1093)
Q Consensus 381 ~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~ 460 (1093)
..|..++-.|+.-.|...|+.++.++|.+...|+.++.+| ..
T Consensus 331 ~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y--------------------------------------~d 372 (606)
T KOG0547|consen 331 LRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAY--------------------------------------AD 372 (606)
T ss_pred HhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHH--------------------------------------hh
Confidence 5555555555666666666666655555555555555444 44
Q ss_pred cCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC
Q 001357 461 KGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD 540 (1093)
Q Consensus 461 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 540 (1093)
..+.++-...|.++.. ++|.++.+|+..|.++.-+++
T Consensus 373 ~~~~~~~~~~F~~A~~-------------------------------------------ldp~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 373 ENQSEKMWKDFNKAED-------------------------------------------LDPENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhccHHHHHHHHHHHh-------------------------------------------cCCCCCchhHhHHHHHHHHHH
Confidence 4444455555555554 456667777777777777777
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhh
Q 001357 541 TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 620 (1093)
Q Consensus 541 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 620 (1093)
+++|+.-|++++.++|+++-++..++.+..+++.+.++...|+.+....|+.++++...+.++..+++++.|.+.|.+++
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCCCC-----ChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHH
Q 001357 621 DATDGK-----DSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695 (1093)
Q Consensus 621 ~~~~~~-----d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~ 695 (1093)
.+.|.. ....++.-+.+ .++. .+++..|+.++.++++++|.+-.++.+||.+..++|+.++|+
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l-~~qw-----------k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAi 557 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALL-VLQW-----------KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAI 557 (606)
T ss_pred hhccccccccccchhhhhhhHh-hhch-----------hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHH
Confidence 766541 11122222222 1111 189999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 001357 696 DLFTQVQEAA 705 (1093)
Q Consensus 696 ~~~~~~~~~~ 705 (1093)
++|++.....
T Consensus 558 elFEksa~lA 567 (606)
T KOG0547|consen 558 ELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 26
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=1.7e-22 Score=248.60 Aligned_cols=545 Identities=13% Similarity=0.050 Sum_probs=426.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQR 222 (1093)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 222 (1093)
...++.+++..+... .+...+..+-..+.+.|++.+|+.+|+.+...+.-. ....+..+..++.+.|...+|...|..
T Consensus 353 ~~~~~~~~~~~~~~~-~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~ 431 (1060)
T PLN03218 353 EENSLAAYNGGVSGK-RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431 (1060)
T ss_pred hhhhHHHhccccCCC-CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344555555554433 345555555666778999999999999998876432 133444566778889999999999988
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC
Q 001357 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG 301 (1093)
Q Consensus 223 al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 301 (1093)
+.. | +...|..+...+...|+ ++.|...|..+.+.. +.+..+++.+...|...|+.+.|..+|..+.... .
T Consensus 432 M~~--p-d~~Tyn~LL~a~~k~g~---~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G--v 503 (1060)
T PLN03218 432 IRN--P-TLSTFNMLMSVCASSQD---IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG--V 503 (1060)
T ss_pred cCC--C-CHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--C
Confidence 754 4 56778888888888888 999999999998865 3477899999999999999999999999998643 2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHH
Q 001357 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI----YPDNCE 377 (1093)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~ 377 (1093)
..+..+|..+...|.+.|++++|+.+|..+... ........|..+...|.+.|++++|..+|..+... .| +..
T Consensus 504 ~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~--Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~v 580 (1060)
T PLN03218 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSK--NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHI 580 (1060)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHH
Confidence 335689999999999999999999999998763 22234567999999999999999999999999763 34 567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 001357 378 TLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG 455 (1093)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~-p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la 455 (1093)
++..+..+|.+.|++++|..+|+.+.+.+ +.+...|..+...| ..|++++|+.+|..+... +..++..+++.+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~----Gv~PD~~TynsLI 656 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK----GVKPDEVFFSALV 656 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Confidence 89999999999999999999999999876 56778899999999 999999999999987653 4455678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHH
Q 001357 456 VIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535 (1093)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 535 (1093)
..|.+.|++++|..+|..+...+ . +.+..++..+...|
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G-----------------------------------------~-~pd~~tynsLI~ay 694 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQG-----------------------------------------I-KLGTVSYSSLMGAC 694 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC-----------------------------------------C-CCCHHHHHHHHHHH
Confidence 99999999999999999998753 2 23667899999999
Q ss_pred HhcCChHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCChhHHHHhhhhhhcccchHHH
Q 001357 536 EQIHDTVAASVLYRLILFK--YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKA 612 (1093)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 612 (1093)
.+.|++++|..+|..+... .| +..+|..+...|.+.|++++|..+|.++.... ..+..++..+...+.+.|+++.|
T Consensus 695 ~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A 773 (1060)
T PLN03218 695 SNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998763 34 46889999999999999999999999987654 33466788888999999999999
Q ss_pred HHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCch
Q 001357 613 KETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFD 692 (1093)
Q Consensus 613 ~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~ 692 (1093)
..+|..+++....++...+..+..+ +. +.+.+|......++..++.++ ....+...
T Consensus 774 ~~l~~~M~k~Gi~pd~~tynsLIgl-c~--------------~~y~ka~~l~~~v~~f~~g~~---------~~~n~w~~ 829 (1060)
T PLN03218 774 LDLLSQAKEDGIKPNLVMCRCITGL-CL--------------RRFEKACALGEPVVSFDSGRP---------QIENKWTS 829 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-HH--------------HHHHHHhhhhhhhhhhhcccc---------ccccchHH
Confidence 9999999998877787777666444 21 446667666666555443322 22233456
Q ss_pred hHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhcc-HHHHHH
Q 001357 693 VSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQ-WQDCKK 771 (1093)
Q Consensus 693 ~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~-~~~A~~ 771 (1093)
.|+.+|+++++..-. .+..++..+-.|++..+....+..+++.+. .-+..++..++..|-..+ |+ ..+|..
T Consensus 830 ~Al~lf~eM~~~Gi~----Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~---~~~~~~A~~ 901 (1060)
T PLN03218 830 WALMVYRETISAGTL----PTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGF---GEYDPRAFS 901 (1060)
T ss_pred HHHHHHHHHHHCCCC----CCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhh---ccChHHHHH
Confidence 799999999987631 245566666677778888888777766533 223455566677777665 33 357999
Q ss_pred HHHHHHHh
Q 001357 772 SLLRAIHL 779 (1093)
Q Consensus 772 ~~~~al~~ 779 (1093)
.|+.+...
T Consensus 902 l~~em~~~ 909 (1060)
T PLN03218 902 LLEEAASL 909 (1060)
T ss_pred HHHHHHHc
Confidence 99998875
No 27
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.7e-25 Score=228.08 Aligned_cols=428 Identities=16% Similarity=0.142 Sum_probs=322.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1093)
.+-.+|+-++..|+|++|+++|..++...|+.+..+..++.||...|+|++-++...+++.++|+. ..+++..+.++-.
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y-~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY-VKALLRRASAHEQ 195 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH-HHHHHHHHHHHHh
Confidence 455689999999999999999999999999999999999999999999999999999999999999 7789999999999
Q ss_pred cCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHH-cCChHH
Q 001357 210 LGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE-IYPYCAMALNYLANHFFF-TGQHFL 286 (1093)
Q Consensus 210 ~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~-~~p~~~~~~~~la~~~~~-~g~~~~ 286 (1093)
+|++.+|+.-..-..-+ .-.+...-..+-.++-.+ |+.....-+. ..|.....-..++..+.. ..+.
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~--------a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~-- 265 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ--------AMKKAKEKLKENRPPVLPSATFIASYFGSFHADP-- 265 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH--------HHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc--
Confidence 99999998765543221 112222222222222222 3333333333 122111111111111100 0000
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhcCC-CCC---------chhhHHHHHHHHH
Q 001357 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKG---DYEKAGLYYMASVKEINK-PHE---------FIFPYYGLGQVQL 353 (1093)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~-~~~---------~~~~~~~la~~~~ 353 (1093)
..........+.....-+.-++..+ .|..|...+.+....... ... .+.++...|..++
T Consensus 266 --------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 266 --------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred --------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 0000000111222222222222233 577777777665542211 111 2566777888899
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHH
Q 001357 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAF 432 (1093)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~ 432 (1093)
-.|++-.|...|..++.++|.+...|..++.+|...++.++....|.++..++|.++++|+..|+++ ..++++.|+.-|
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhc
Q 001357 433 KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 512 (1093)
Q Consensus 433 ~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 512 (1093)
++++.+.|. ....+..++++.++.+.++++...|+.+..
T Consensus 418 ~Kai~L~pe-----~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk------------------------------------ 456 (606)
T KOG0547|consen 418 QKAISLDPE-----NAYAYIQLCCALYRQHKIAESMKTFEEAKK------------------------------------ 456 (606)
T ss_pred HHHhhcChh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
Confidence 999998776 477888999999999999999999999988
Q ss_pred cCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC------hHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 001357 513 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAK-ARNNLQLSIELVNEA 585 (1093)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~~~~a 585 (1093)
..|..+.++...|.++..+++++.|.+.|..++.+.|. ++..+...+.+.. -.+++..|+.++.++
T Consensus 457 -------kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA 529 (606)
T KOG0547|consen 457 -------KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKA 529 (606)
T ss_pred -------hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHH
Confidence 46788899999999999999999999999999999988 5555555444432 448999999999999
Q ss_pred HHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCC
Q 001357 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATD 624 (1093)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 624 (1093)
++++|.+..++..||.+.+++|+.++|+.+|++++.+..
T Consensus 530 ~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 530 IELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877543
No 28
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.95 E-value=9.6e-23 Score=229.44 Aligned_cols=644 Identities=15% Similarity=0.089 Sum_probs=441.6
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
+...|+..|-++++++|....+|..+|..|...-+...|..+|+++.+++|.+..++-..+..|....+++.|..+.-.+
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999997666
Q ss_pred HHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 189 LQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 189 l~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
-+..|.. ....|..+|..|...+++..|+..|+.++..+|.+..+|..+|.+|...|. +..|++.|.++..++|.+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcHh
Confidence 6666543 123355689999999999999999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC----CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----CC-
Q 001357 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNH----GPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KP- 338 (1093)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~- 338 (1093)
..+.+..+.+....|.|.+++..+...+..... ....++++..++..++..|-+.+|..++++++..+- ..
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988887743211 223456777778888888887788777777765321 00
Q ss_pred CCchhhHHHHHHHHHHc-----------------------CCH------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001357 339 HEFIFPYYGLGQVQLKL-----------------------GDF------RSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (1093)
Q Consensus 339 ~~~~~~~~~la~~~~~~-----------------------g~~------~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (1093)
......|..+|..+.-. +.. --+.+++-..++.- .++..|+++|..|++.
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~-~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA-IHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh-hccchHHHHhHHHHHH
Confidence 11112222222221110 100 11233333333322 1255677787777762
Q ss_pred --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 001357 390 --------GQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK 461 (1093)
Q Consensus 390 --------g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~ 461 (1093)
.+...|+..+.+++++..++...|+.||.+-..|++.-|...|-+.+...|. ....|.|+|.++...
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~-----~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPT-----CHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhcccc-----chhheeccceeEEec
Confidence 2335788888888888888888888888776667777777777776665444 367788888888888
Q ss_pred CCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHh----hhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHh
Q 001357 462 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF----KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 537 (1093)
Q Consensus 462 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~ 537 (1093)
.+++.|...|..+..+.|. .-...+....-.... ..+.+|.--....... ........|+.--.....
T Consensus 864 ~d~E~A~~af~~~qSLdP~-------nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~-gka~~f~Yw~c~te~h~~ 935 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPL-------NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKE-GKAKKFQYWLCATEIHLQ 935 (1238)
T ss_pred ccHHHhhHHHHhhhhcCch-------hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccc-cccchhhHHHHHHHHHHh
Confidence 8888888888888775432 111222221111111 1112221110000000 011123334444444555
Q ss_pred cCChHHHHH----------HHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc------CCChhHHHHhhh
Q 001357 538 IHDTVAASV----------LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN------GKYPNALSMLGD 601 (1093)
Q Consensus 538 ~g~~~~A~~----------~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~ 601 (1093)
.|+++.-+. .+.+.+..+|++..+|...|.....++.+..|.....+++.+- ..++.+--.+|.
T Consensus 936 Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gR 1015 (1238)
T KOG1127|consen 936 NGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGR 1015 (1238)
T ss_pred ccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Confidence 565555443 3444556789999999999999999999999988888866542 333447778999
Q ss_pred hhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHH---HH
Q 001357 602 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY---AA 678 (1093)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---a~ 678 (1093)
+++..|.++.|...+...-..... +. .-+.++ .|-. +++.++++.|++++.+...+.. ..
T Consensus 1016 L~lslgefe~A~~a~~~~~~evdE-di-~gt~l~---lFfk------------ndf~~sl~~fe~aLsis~se~d~vvLl 1078 (1238)
T KOG1127|consen 1016 LELSLGEFESAKKASWKEWMEVDE-DI-RGTDLT---LFFK------------NDFFSSLEFFEQALSISNSESDKVVLL 1078 (1238)
T ss_pred hhhhhcchhhHhhhhcccchhHHH-HH-hhhhHH---HHHH------------hHHHHHHHHHHHHhhhcccccchhhhh
Confidence 999999999887776532211111 11 111122 1223 8899999999999987655333 34
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCC--CHHHHHHH
Q 001357 679 NGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNT--DAQILLYL 756 (1093)
Q Consensus 679 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~l~~l 756 (1093)
-.++++....+.-+.|...+-++....| ....+++.++-++....+-..-....++.... +... .-.--+..
T Consensus 1079 ~kva~~~g~~~~k~~A~~lLfe~~~ls~-----~~~~sll~L~A~~ild~da~~ssaileel~kl-~k~e~~~~~~~ll~ 1152 (1238)
T KOG1127|consen 1079 CKVAVCMGLARQKNDAQFLLFEVKSLSK-----VQASSLLPLPAVYILDADAHGSSAILEELEKL-LKLEWFCWPPGLLK 1152 (1238)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHhCc-----cchhhHHHHHHHHHHhhhhhhhHHHHHHHHHh-hhhHHhccChhHHH
Confidence 4556666677888999999999988876 56777888887766544433333333332221 0000 00111233
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHH
Q 001357 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792 (1093)
Q Consensus 757 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 792 (1093)
-.+|-+.|+...-.+.++++++.+|+|+.+|-.|..
T Consensus 1153 e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~v 1188 (1238)
T KOG1127|consen 1153 ELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSV 1188 (1238)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 445667888888999999999999999999998884
No 29
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.95 E-value=8.8e-25 Score=268.26 Aligned_cols=449 Identities=13% Similarity=0.002 Sum_probs=270.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q 001357 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1093)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1093)
+..+...+...|++.+|+.+|..+...... ..+..++..+..++...++++.|..++..+.... ..| ...++..+..
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~-~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~-~~~~~n~Li~ 166 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPF-TLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEP-DQYMMNRVLL 166 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCc-chHHHHHHHH
Confidence 444444455555555555555555432211 1233455555666666666666666665555421 122 2445556666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH-hcCCHHHH
Q 001357 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP-RDAQAFIDLGELL-ISSDTGAA 428 (1093)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p-~~~~~~~~la~~~-~~~~~~~A 428 (1093)
+|.+.|+++.|..+|+.+.. | +..+|..+...|.+.|++++|+.+|.++....+ .+..++..+...+ ..+....+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 66666666666666665532 2 445666666666666666666666666655432 1233444444444 55666666
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhh
Q 001357 429 LDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLF 508 (1093)
Q Consensus 429 ~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1093)
..++..+.+. +...+..+++.+...|.+.|++++|..+|+.+..
T Consensus 244 ~~l~~~~~~~----g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------------------------------- 287 (697)
T PLN03081 244 QQLHCCVLKT----GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-------------------------------- 287 (697)
T ss_pred HHHHHHHHHh----CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC--------------------------------
Confidence 5555443332 3333455666666777777777777777665422
Q ss_pred hhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 509 HRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587 (1093)
Q Consensus 509 ~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 587 (1093)
.+..+|..+...|...|++++|..+|.++.... ..+..+|..+...+...|.+++|..++..+++
T Consensus 288 --------------~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 288 --------------KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred --------------CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 245566667777777777777777777665532 12345666666777777777777777777666
Q ss_pred Hc-CCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q 001357 588 VN-GKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666 (1093)
Q Consensus 588 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 666 (1093)
.. +.+..++..+...|.+.|+++.|...|+++.. ++..++..|... |... |+.++|+++|++
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~-y~~~------------G~~~~A~~lf~~ 416 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAG-YGNH------------GRGTKAVEMFER 416 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHH-HHHc------------CCHHHHHHHHHH
Confidence 65 44556666777777777777777777776543 355566666666 6666 777777777777
Q ss_pred HHhhCCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhc
Q 001357 667 VIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1093)
Q Consensus 667 ~l~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 745 (1093)
+...... |..+++.+...+.+.|.+++|..+|+.+.+..+- ..+...|..+..+|.+.|++++|.+++++ .+
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~---~p~~~~y~~li~~l~r~G~~~eA~~~~~~----~~ 489 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI---KPRAMHYACMIELLGREGLLDEAYAMIRR----AP 489 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC---CCCccchHhHHHHHHhcCCHHHHHHHHHH----CC
Confidence 7665433 5566666777777777777777777777654321 12345666677777777777777776543 34
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH
Q 001357 746 YNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 799 (1093)
Q Consensus 746 ~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~~ 799 (1093)
..++..+|..|..+|...|+.+.|..++++++.+.|++...+..++.+|...+.
T Consensus 490 ~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 490 FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 556666777777777777777777777777777777766666666666555443
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=6.4e-24 Score=218.64 Aligned_cols=473 Identities=19% Similarity=0.176 Sum_probs=367.1
Q ss_pred HHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001357 84 AILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASR--IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1093)
Q Consensus 84 ~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1093)
++++.|+.-|..... +.+|+..|+-+++ ..|+....-+.+|.++++..+|.+|+++|+.++..-|.-
T Consensus 202 svl~nlaqqy~~ndm-----------~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi 270 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDM-----------TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI 270 (840)
T ss_pred HHHHHHHHHhhhhHH-----------HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc
Confidence 456666666554443 3489998887764 346777777889999999999999999999999988763
Q ss_pred -----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------
Q 001357 162 -----VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL---------- 226 (1093)
Q Consensus 162 -----~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------- 226 (1093)
...+..+|..+.+.|.|+.|+..|+.++...|+. ..-+++..|++..|+-++-.+.|.+++.+
T Consensus 271 nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~--~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi 348 (840)
T KOG2003|consen 271 NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNF--IAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI 348 (840)
T ss_pred chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccH--HhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc
Confidence 4567788888999999999999999999999997 34577889999999999999999999875
Q ss_pred ----CCCcHHHHHHHHHHHHHh---hhHHhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 001357 227 ----DPENVEALVALAVMDLQA---NEAAGIRKGMEKMQRAFE--IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1093)
Q Consensus 227 ----~p~~~~a~~~la~~~~~~---~~~~~~~~Al~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 297 (1093)
+|++......+-.-.++. .+....++++-.--+.+. +.|+.... -.++-..++.
T Consensus 349 ~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g-----------------~dwcle~lk~ 411 (840)
T KOG2003|consen 349 KEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAG-----------------CDWCLESLKA 411 (840)
T ss_pred CCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcc-----------------cHHHHHHHHH
Confidence 222211111111111111 111112223322222221 12222211 1122222222
Q ss_pred cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCc
Q 001357 298 TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKL--GDFRSALTNFEKVLEIYPDN 375 (1093)
Q Consensus 298 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~ 375 (1093)
....+...+.-.+.+..|.+.|+++.|++++.-.-.. .+.....+-.+|..+++.. .++..|..+...++..+.-+
T Consensus 412 s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k--dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn 489 (840)
T KOG2003|consen 412 SQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK--DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYN 489 (840)
T ss_pred hhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc--cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccC
Confidence 2222333455677888999999999999998766542 2222233455666666653 47899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 001357 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 454 (1093)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l 454 (1093)
+.++.+.|.+.+..|++++|.+.|+.++..+.....+++++|..+ .+|+.++|+.+|-+...++.+ +.++++.+
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n-----n~evl~qi 564 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-----NAEVLVQI 564 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-----hHHHHHHH
Confidence 999999999999999999999999999999999999999999999 999999999999998888776 48999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHH
Q 001357 455 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (1093)
Q Consensus 455 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~ 534 (1093)
+.+|-.+.+..+|++++.++.. .-|.++.++..+|.+
T Consensus 565 aniye~led~aqaie~~~q~~s-------------------------------------------lip~dp~ilskl~dl 601 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANS-------------------------------------------LIPNDPAILSKLADL 601 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhcc-------------------------------------------cCCCCHHHHHHHHHH
Confidence 9999999999999999999887 567899999999999
Q ss_pred HHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHH
Q 001357 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 614 (1093)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 614 (1093)
|-+.|+-.+|.+++-......|.+.++.-+|+..|....-++.|+.+|+++.-+.|+......+++.|+.+.|+|..|..
T Consensus 602 ydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred hhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred HHHHhhhcCCCCChHHHHHhHhH
Q 001357 615 TFRAASDATDGKDSYATLSLGNW 637 (1093)
Q Consensus 615 ~~~~~l~~~~~~d~~~~~~l~~~ 637 (1093)
.|+.+-...|. +...+-.|..+
T Consensus 682 ~yk~~hrkfpe-dldclkflvri 703 (840)
T KOG2003|consen 682 LYKDIHRKFPE-DLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHhCcc-chHHHHHHHHH
Confidence 99999888887 55554444433
No 31
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.94 E-value=2.9e-23 Score=254.80 Aligned_cols=464 Identities=12% Similarity=0.011 Sum_probs=337.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEAD--RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1093)
..|......+...|++.+|+.+|..+.... +.+..++..+..++.+.+++..|..++..+..........++..+..+
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 357777777888888888888888877643 235677777777888888888888888888776533335667777788
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1093)
|.+.|+++.|..+|..+.. | +...|..+...+...|+ +++|+..|.++....+
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~---~~~A~~lf~~M~~~g~--------------------- 220 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGN---YREAFALFREMWEDGS--------------------- 220 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcC---HHHHHHHHHHHHHhCC---------------------
Confidence 8888888888888877642 2 44455566666666655 6666666665554321
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 001357 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1093)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1093)
..+..++..+..++...|....+..++..+++.. ......++..+...|.+.|++++|..+|+
T Consensus 221 ---------------~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 221 ---------------DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG--VVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred ---------------CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC--CCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 1123445555556666666666666666655431 12234556677777888888888888777
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001357 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 444 (1093)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1093)
.+. +.+..+|..+...|.+.|++++|+.+|.++.... ..+..++..+...+ ..|.++.|..++..+.+. +.
T Consensus 284 ~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~----g~ 356 (697)
T PLN03081 284 GMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT----GF 356 (697)
T ss_pred hCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh----CC
Confidence 653 3466778888888888888888888888876543 22455666777777 778888888777766553 34
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCch
Q 001357 445 EVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK 524 (1093)
Q Consensus 445 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 524 (1093)
..+..+++.+...|.+.|++++|..+|+++.. .+
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------------------------------------------~d 390 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------------------------------------------KN 390 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------------------------------------------CC
Confidence 44567788888888888888888888877643 24
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC--ChhHHHHhhh
Q 001357 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK--YPNALSMLGD 601 (1093)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 601 (1093)
..+|..+...|...|+.++|+.+|+++.... ..+..++..+...+...|..++|..+|+.+.+..+- +...+..+..
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 5678888888888888888888888887643 223567788888888889999999999888765432 3457788888
Q ss_pred hhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001357 602 LELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 681 (1093)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 681 (1093)
++.+.|++++|...++++ ...++...+..|... |... |+++.|...+++++...|.++..+..+
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a-~~~~------------g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA-CRIH------------KNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH-HHHc------------CCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 899999999999888764 233466777778877 7777 889999999999999999988889999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHh
Q 001357 682 GVVLAEKGQFDVSKDLFTQVQEAA 705 (1093)
Q Consensus 682 a~~~~~~g~~~~A~~~~~~~~~~~ 705 (1093)
+.+|...|++++|..+++.+.+..
T Consensus 535 ~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 535 LNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999998765
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=2.3e-22 Score=240.78 Aligned_cols=469 Identities=10% Similarity=-0.032 Sum_probs=326.5
Q ss_pred HhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Q 001357 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1093)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1093)
.-..|..+...+..+.+.++.|++..|+..|+++++.+|.++.+...++.++...|++++|+.++++++...|.. ....
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~-~~~l 105 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNIS-SRGL 105 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCC-HHHH
Confidence 344566677777777777777777777777777777777775444466666667777777777777777222222 2333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
..+|.++...|+++.|+..|+++++.+|+++.++..++.++...++ ..+|+..+.++...+|.+... ..++.++..
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q---~~eAl~~l~~l~~~dp~~~~~-l~layL~~~ 181 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR---GGVVLKQATELAERDPTVQNY-MTLSYLNRA 181 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHhcccCcchHHH-HHHHHHHHh
Confidence 3346677777777777777777777777777777766666666666 777777777777777764443 444444444
Q ss_pred cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC----
Q 001357 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG---- 356 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g---- 356 (1093)
.+++.+|+..+++++... |.+...+..+..++...|-...|.+...+--..+ ...+........+.-.++.+
T Consensus 182 ~~~~~~AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~ 257 (822)
T PRK14574 182 TDRNYDALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPT 257 (822)
T ss_pred cchHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhccccc
Confidence 556655777777777543 5556677777777777777776666554322211 00111111111111111111
Q ss_pred --------CHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Q 001357 357 --------DFRSALTNFEKVLEIYPDN-------CETLKALGHIYVQLGQIEKAQELLRKAAKID-PRDAQAFIDLGELL 420 (1093)
Q Consensus 357 --------~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-p~~~~~~~~la~~~ 420 (1093)
-.+.|+..++.++...|.. ..+..-...++...+++.+++..|+.+.... |--..+....|..|
T Consensus 258 ~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 258 RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 2355777777777643322 2344455667778899999999999877544 33455777788888
Q ss_pred -hcCCHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchh-hhhcccccchhhhhhhh
Q 001357 421 -ISSDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW-LTLLDSKTKTYVIDASA 497 (1093)
Q Consensus 421 -~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~ 497 (1093)
..+.+.+|+.+|..++.-.+.. ..+........|...|+..+++++|..++.+.....|+ .......
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~---------- 407 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP---------- 407 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC----------
Confidence 8999999999999886643221 11222344567888999999999999999999875442 1111110
Q ss_pred hHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHH
Q 001357 498 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQL 577 (1093)
Q Consensus 498 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 577 (1093)
....+|+.......++.++...|++.+|...++.++...|.+...++.+|.++...|.+..
T Consensus 408 -------------------~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 408 -------------------GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred -------------------CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 1115677788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCC
Q 001357 578 SIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 627 (1093)
Q Consensus 578 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d 627 (1093)
|...++.+..++|.+..+...++.+++..++|.+|......++...|...
T Consensus 469 A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 469 AEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 99999999999999999999999999999999999999999999998743
No 33
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.94 E-value=6.2e-22 Score=223.02 Aligned_cols=653 Identities=14% Similarity=0.072 Sum_probs=393.3
Q ss_pred HHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 001357 56 VEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKG 135 (1093)
Q Consensus 56 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a 135 (1093)
...|...|=+++..++. -...+..||.+|...-... .|.++|.+|..+||.+..++-..+
T Consensus 474 ~~~al~ali~alrld~~---------~apaf~~LG~iYrd~~Dm~-----------RA~kCf~KAFeLDatdaeaaaa~a 533 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS---------LAPAFAFLGQIYRDSDDMK-----------RAKKCFDKAFELDATDAEAAAASA 533 (1238)
T ss_pred HHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhcCCchhhhhHHHHH
Confidence 66666766666655431 2457788888887654322 678888888888877766665555
Q ss_pred HHHHHcCCHHHHHH------------------------------------HHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001357 136 QLLLAKGEVEQASS------------------------------------AFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1093)
Q Consensus 136 ~~~~~~g~~~~A~~------------------------------------~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1093)
..|....+++.|.. .|+.++..+|.+..+|.++|.+|...|.|.
T Consensus 534 dtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~ 613 (1238)
T KOG1127|consen 534 DTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYS 613 (1238)
T ss_pred HHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCcee
Confidence 55555555555544 455555555555555555555555555555
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhh-------h----HH
Q 001357 180 DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQAN-------E----AA 248 (1093)
Q Consensus 180 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~-------~----~~ 248 (1093)
.|++.|.++..++|.+ ....+..+.+...+|.+.+|+..+...+............++.++++.- - ..
T Consensus 614 ~AlKvF~kAs~LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd 692 (1238)
T KOG1127|consen 614 HALKVFTKASLLRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVD 692 (1238)
T ss_pred hHHHhhhhhHhcCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 5555555555555555 3444445555555555555555555544443333333333333332221 1 01
Q ss_pred hHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCChH--H---------------------------HHHHHHHHHhcc
Q 001357 249 GIRKGMEKMQRAFEIY-PYCAMALNYLANHFFFTGQHF--L---------------------------VEQLTETALAVT 298 (1093)
Q Consensus 249 ~~~~Al~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~--~---------------------------A~~~~~~al~~~ 298 (1093)
-++++++.|.-++... -.+...|..++..+...-..+ . +.+.+-..++.
T Consensus 693 ~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl- 771 (1238)
T KOG1127|consen 693 FFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL- 771 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH-
Confidence 1222333332222222 222223333322211110000 0 11111111111
Q ss_pred CCCCCchHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 299 NHGPTKSHSYYNLARSYHS--------KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1093)
Q Consensus 299 ~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1093)
...+..|+++|..|+. +.+...|+.++.++++. ..++...|..||.+ ...|++.-|..+|-+.+.
T Consensus 772 ---~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L---~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~ 844 (1238)
T KOG1127|consen 772 ---AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL---CANNEGLWNALGVL-SGIGNVACAQHCFIKSRF 844 (1238)
T ss_pred ---hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH---hhccHHHHHHHHHh-hccchhhhhhhhhhhhhh
Confidence 1124567778777766 22345688888888873 34455667777777 666888888888888888
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 001357 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIE 449 (1093)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 449 (1093)
..|.+...|.++|.++....+++-|...|.++..++|.+...|...+.+. ..|+.-+++..+.....+....+......
T Consensus 845 sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~ 924 (1238)
T KOG1127|consen 845 SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQ 924 (1238)
T ss_pred ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhh
Confidence 88888888888888888888888888888888888888888888888888 78887777777766555544444444566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHH
Q 001357 450 VLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLF 529 (1093)
Q Consensus 450 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 529 (1093)
.+.+....+...|+++.-+..-.++-.... .++ .....+|....++.
T Consensus 925 Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~------------------------al~---------~yf~~~p~~~fAy~ 971 (1238)
T KOG1127|consen 925 YWLCATEIHLQNGNIEESINTARKISSASL------------------------ALS---------YYFLGHPQLCFAYA 971 (1238)
T ss_pred HHHHHHHHHHhccchHHHHHHhhhhhhhHH------------------------HHH---------HHHhcCcchhHHHH
Confidence 777777777888887776666555433110 000 01115678899999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHh------cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh-HHHHhhhh
Q 001357 530 NLARLLEQIHDTVAASVLYRLILFK------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-ALSMLGDL 602 (1093)
Q Consensus 530 ~la~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~ 602 (1093)
..|.....++.+..|...+.+++.. ...+..+.-.+|.+++..|.++.|...+... |.... -.......
T Consensus 972 ~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~----~~evdEdi~gt~l~ 1047 (1238)
T KOG1127|consen 972 ANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE----WMEVDEDIRGTDLT 1047 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc----chhHHHHHhhhhHH
Confidence 9999999999999999999887642 1233446777889999999999776544321 11111 01111122
Q ss_pred hhcccchHHHHHHHHHhhhcCCC-CChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001357 603 ELKNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 681 (1093)
Q Consensus 603 ~~~~g~~~~A~~~~~~~l~~~~~-~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 681 (1093)
.+..+++.++...|++++.+..+ .+...++.-+.+.-... +.-+.|...+-+++...|.....+..+
T Consensus 1048 lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~------------~~k~~A~~lLfe~~~ls~~~~~sll~L 1115 (1238)
T KOG1127|consen 1048 LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA------------RQKNDAQFLLFEVKSLSKVQASSLLPL 1115 (1238)
T ss_pred HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc------------ccchHHHHHHHHHHHhCccchhhHHHH
Confidence 26678999999999999997654 23333322222212222 677889999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001357 682 GVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHY 761 (1093)
Q Consensus 682 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~ 761 (1093)
+.++.-..+-.....+.++......... -+...-+..-.+|..+|+-....+.+++++-. .|.++.+|..|..-|.
T Consensus 1116 ~A~~ild~da~~ssaileel~kl~k~e~--~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~--~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1116 PAVYILDADAHGSSAILEELEKLLKLEW--FCWPPGLLKELIYALQGRSVAVKKQIQRAVHS--NPGDPALWSLLSVRYA 1191 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhhhHH--hccChhHHHHHHHHHhhhhHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 8888766555444444444443321000 01122234456788899999999999999876 5666777776664222
Q ss_pred hh-c-------------cHHHHHHHHHHHHHhCCCCcchhhHH
Q 001357 762 EA-E-------------QWQDCKKSLLRAIHLAPSNYTLRFDA 790 (1093)
Q Consensus 762 ~~-g-------------~~~~A~~~~~~al~~~P~~~~~~~~l 790 (1093)
.. + .+..-++..++++.+.|.|+.++-.|
T Consensus 1192 ~~n~~n~v~a~~~~k~y~~t~~l~~iQ~a~~L~Pwd~a~wkaL 1234 (1238)
T KOG1127|consen 1192 QRNAKNGVVANHGKKAYLYTAVLKTIQKAALLSPWDPAIWKAL 1234 (1238)
T ss_pred HHhccCCeehhHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 11 1 12234566788889999998877655
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.94 E-value=6.9e-24 Score=218.40 Aligned_cols=480 Identities=18% Similarity=0.189 Sum_probs=303.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLG 202 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~ 202 (1093)
.+++.++..|.....+.+|+..|+-+++. .|+....-+.+|.++++..+|.+|+++|+.++..-|... ..+..+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 46788999999999999999999988753 577777888999999999999999999999999888763 344567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC--------------CCcH
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY--------------PYCA 268 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~--------------p~~~ 268 (1093)
+|..+.+.|.|+.|+..|..+++..|+.. +-+.|..+++..|+ .++-.+.|.+++.+- |++.
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~~pn~~-a~~nl~i~~f~i~d---~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEEAPNFI-AALNLIICAFAIGD---AEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHhCccHH-hhhhhhhhheecCc---HHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 89999999999999999999999999554 45667778888888 666666677776542 1111
Q ss_pred HHHHHHHH-HH--HHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhH
Q 001357 269 MALNYLAN-HF--FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPY 345 (1093)
Q Consensus 269 ~~~~~la~-~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 345 (1093)
.+-..+-. ++ +...+-..|.+..-.+.+... |.. .-+|.-.-.+.-..++.....+.....-
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiia--pvi-------------~~~fa~g~dwcle~lk~s~~~~la~dle 422 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIA--PVI-------------APDFAAGCDWCLESLKASQHAELAIDLE 422 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc--ccc-------------ccchhcccHHHHHHHHHhhhhhhhhhhh
Confidence 11111111 00 011111112222222221110 000 0000001111111111100112222233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h
Q 001357 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDN-CETLKALGHIYVQLG--QIEKAQELLRKAAKIDPRDAQAFIDLGELL-I 421 (1093)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g--~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~ 421 (1093)
.+.+..+++.|+++.|++++.-.-+.+... ..+-.+|..+++.+| ++..|..+-..++.++.-++.+..+.|.+. .
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA 502 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence 455666777777777777766554443222 223344444444432 667777777777777777777777777765 7
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHH
Q 001357 422 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (1093)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1093)
.|++++|...|+.++..... -.+.++++|..+-.+|++++|+.+|-+...+
T Consensus 503 ngd~dka~~~ykeal~ndas-----c~ealfniglt~e~~~~ldeald~f~klh~i------------------------ 553 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDAS-----CTEALFNIGLTAEALGNLDEALDCFLKLHAI------------------------ 553 (840)
T ss_pred cCcHHHHHHHHHHHHcCchH-----HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH------------------------
Confidence 77777777777776654322 2567777777777777777777777665442
Q ss_pred hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (1093)
Q Consensus 502 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 581 (1093)
--+++.+++.++.+|..+.+..+|+++|.++...-|+++..+..|+.+|-+.|+-.+|..+
T Consensus 554 -------------------l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 554 -------------------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred -------------------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 1236667777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHH
Q 001357 582 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1093)
Q Consensus 582 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1093)
+-......|-+.++.-.++..|+...-+++|+.+|+++.-..|....+. +.++.+ +... |+|.+|+
T Consensus 615 ~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwq-lmiasc-~rrs------------gnyqka~ 680 (840)
T KOG2003|consen 615 HYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQ-LMIASC-FRRS------------GNYQKAF 680 (840)
T ss_pred hhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHH-HHHHHH-HHhc------------ccHHHHH
Confidence 7777777777777777777777777777777777777665555422222 223333 4444 7777777
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 001357 662 ELYTRVIVQHTSNLYAANGAGVVLAEKG 689 (1093)
Q Consensus 662 ~~~~~~l~~~p~~~~a~~~la~~~~~~g 689 (1093)
..|+..-...|.+...+-.|..+....|
T Consensus 681 d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 681 DLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 7777777777777766666665555444
No 35
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=2.3e-22 Score=240.84 Aligned_cols=440 Identities=12% Similarity=-0.004 Sum_probs=352.6
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
|++..|+..|.++++.+|.++.....++.++...|++++|+..+++++...|.....+..+|.++...|+|++|+.+|++
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~k 127 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQS 127 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34449999999999999999755558889999999999999999999944455566666668899999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 188 ALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
++..+|++ +.+++.++.++...++.++|+..+.+++..+|.+... ..++.++...++ ..+|+..+++++..+|.+
T Consensus 128 aL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~---~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 128 SLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR---NYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch---HHHHHHHHHHHHHhCCCC
Confidence 99999999 7778899999999999999999999999999986554 445555544444 666999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhc---------C---CHHHHHHHHHHHHHhc
Q 001357 268 AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK---------G---DYEKAGLYYMASVKEI 335 (1093)
Q Consensus 268 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~---------g---~~~~A~~~~~~al~~~ 335 (1093)
..++..+...+...|-...|.++...--..... ..........+.-..+. . -.+.|+..+...+...
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~-~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~ 281 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSA-EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRW 281 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH-HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998887753321110 00001111111111111 1 2456777777777644
Q ss_pred CCCCC----chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---
Q 001357 336 NKPHE----FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDP--- 407 (1093)
Q Consensus 336 ~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p--- 407 (1093)
+..|. ...+....-.++...|++.+++..|+.+.... |--..+....|..|...++.++|+.+|..++...|
T Consensus 282 ~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 282 GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 44343 23455667778889999999999999987554 32456888899999999999999999999987652
Q ss_pred ---CCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh-c---------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 408 ---RDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK-A---------GEEVPIEVLNNIGVIHFEKGEFESAHQSFKD 473 (1093)
Q Consensus 408 ---~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~-~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 473 (1093)
.+......|...+ ..+++++|..++.+.....|- . +.+.-......++.++...|++.+|...+++
T Consensus 362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2344456677777 999999999999998875441 0 1111246777789999999999999999999
Q ss_pred HHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001357 474 ALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (1093)
Q Consensus 474 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (1093)
.+. ..|.+..+...+|.++...|.+..|...++.+..
T Consensus 442 l~~-------------------------------------------~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 442 LSS-------------------------------------------TAPANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHH-------------------------------------------hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 988 5688999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHH
Q 001357 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNAL 596 (1093)
Q Consensus 554 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 596 (1093)
.+|++..+...++.++..++++.+|......++...|+++.+.
T Consensus 479 l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 479 LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999999999999999999998654
No 36
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.5e-22 Score=214.69 Aligned_cols=509 Identities=14% Similarity=0.123 Sum_probs=347.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001357 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1093)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1093)
+..+-+-+..+.+|.-|+-+-+++..+. .++.+ .+.+|.|++-.|++..|......- .+...+..+.+..+.++...
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d-~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLT-NDPAD-IYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHH-HHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHH
Confidence 3444445566777888888888877666 33233 456788888888877777666554 45555666666777777776
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHH
Q 001357 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (1093)
Q Consensus 245 ~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (1093)
.+ ++.|+.++.+. ... .++..+.. .+ + +......+..
T Consensus 96 k~---~~~al~vl~~~-~~~-~~~f~yy~-----------------------------~~--~----~~~l~~n~~~--- 132 (611)
T KOG1173|consen 96 KE---WDQALLVLGRG-HVE-TNPFSYYE-----------------------------KD--A----ANTLELNSAG--- 132 (611)
T ss_pred HH---HHHHHHHhccc-chh-hcchhhcc-----------------------------hh--h----hceeccCccc---
Confidence 66 66666665543 100 00000000 00 0 0000000000
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-H
Q 001357 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA-A 403 (1093)
Q Consensus 325 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~-l 403 (1093)
... .........+..|.+|....+.++|...|..++..++.+.+++..+....+-.-+ +-..++... +
T Consensus 133 -~~~--------~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~--Ee~~ll~~l~~ 201 (611)
T KOG1173|consen 133 -EDL--------MINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQ--EEFELLESLDL 201 (611)
T ss_pred -ccc--------cccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchh--HHHHHHhcccH
Confidence 000 0111123345566666667777777777777777666666665555444332210 111111110 0
Q ss_pred H-hCCCCHHHHHHHHHHHhcCCHH-HHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcch
Q 001357 404 K-IDPRDAQAFIDLGELLISSDTG-AALDAF--KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (1093)
Q Consensus 404 ~-~~p~~~~~~~~la~~~~~~~~~-~A~~~~--~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 479 (1093)
. ....+....-.+-.+.....+. .++..- .... +...+..++...+..++..++|.+...++...+..
T Consensus 202 a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~------~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-- 273 (611)
T KOG1173|consen 202 AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLI------GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-- 273 (611)
T ss_pred HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhh------hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--
Confidence 0 0011111111111111000000 000000 0011 11224678888899999999999999999999884
Q ss_pred hhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhcCCh
Q 001357 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVT-VLFNLARLLEQIHDTVAASVLYRLILFKYQDY 558 (1093)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 558 (1093)
.|-... .-+.+| ++...|+..+-..+-.+++..+|+.
T Consensus 274 -----------------------------------------dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~ 311 (611)
T KOG1173|consen 274 -----------------------------------------DPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSK 311 (611)
T ss_pred -----------------------------------------CCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCC
Confidence 333333 444555 8888899888888888999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHH
Q 001357 559 VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWN 638 (1093)
Q Consensus 559 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~ 638 (1093)
+..|+.+|..|...|++.+|..+|.++..++|....+|..+|..+.-.|..++|+..|..+.+..+. .....+.+|.-
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgme- 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGME- 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999998776 22233346655
Q ss_pred HHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCC--CCchhH
Q 001357 639 YFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF--VQMPDV 716 (1093)
Q Consensus 639 y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~~~ 716 (1093)
|..+ ++++-|.++|.+++.+.|.++..++-+|.+....+.+.+|..+|+.++..-+.... +.....
T Consensus 390 y~~t------------~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~ 457 (611)
T KOG1173|consen 390 YMRT------------NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT 457 (611)
T ss_pred HHHh------------ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence 8888 99999999999999999999999999999999999999999999999955432111 124567
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Q 001357 717 WINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796 (1093)
Q Consensus 717 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~ 796 (1093)
+.||||+|.+++.+.+|+..|++++.. .+.++.++..+|.+|...|+++.|+..|.+++-+.|+|..+.--|..++..
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999998 778899999999999999999999999999999999997666666655444
No 37
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.4e-22 Score=213.67 Aligned_cols=458 Identities=15% Similarity=0.138 Sum_probs=337.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
+..|.-|+-+-+++..+. .+|.-.+.+|++++..|+|..|..+...- .....+..+.+..+.++....+++.|+.++.
T Consensus 29 q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred HHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778999999998887 78888899999999999999998887765 5566788999999999999999999999988
Q ss_pred HH------HHhCCCC------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001357 187 RA------LQVHPSC------------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1093)
Q Consensus 187 ~a------l~~~p~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1093)
.. +..+|.+ ...+++..|.+|..+.+.++|+..|..++..++.+.++...+....+
T Consensus 107 ~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~m 186 (611)
T KOG1173|consen 107 RGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHM 186 (611)
T ss_pred ccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 32 1111111 12345667888999999999999999999999999988877766555
Q ss_pred HhhhHHhHHHHHHHHHHH-HH-hCCCcHHHHHHHHHHHHHcCChHHHHHHHH-HHHhccCCCCCchHHHHHHHHHHHhcC
Q 001357 243 QANEAAGIRKGMEKMQRA-FE-IYPYCAMALNYLANHFFFTGQHFLVEQLTE-TALAVTNHGPTKSHSYYNLARSYHSKG 319 (1093)
Q Consensus 243 ~~~~~~~~~~Al~~~~~a-l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~~~~~~~~~~~~~la~~~~~~g 319 (1093)
.... +-...+... +. ....+...+..+-.+.......+....... ..+ .....+.......+..++..+
T Consensus 187 lt~~-----Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl---~~l~~~~dll~~~ad~~y~~c 258 (611)
T KOG1173|consen 187 LTAQ-----EEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESL---IGLAENLDLLAEKADRLYYGC 258 (611)
T ss_pred cchh-----HHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhh---hhhhhcHHHHHHHHHHHHHcC
Confidence 4421 111111110 00 000111111111111000000000000000 000 011234567777888888889
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1093)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 399 (1093)
+|.+..+.+...+.. .|-+..++.....++...|+..+-..+-.+++..+|+.+..|+.+|..|...|++.+|..+|
T Consensus 259 ~f~~c~kit~~lle~---dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 259 RFKECLKITEELLEK---DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred hHHHHHHHhHHHHhh---CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 999999888888873 44444444333338888888888888888888889999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001357 400 RKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1093)
Q Consensus 400 ~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 478 (1093)
.++..++|....+|+.+|..+ ..+..++|+..|..|.++++.. ..-...+|.-|...+++..|..+|.+|+.
T Consensus 336 SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-----hlP~LYlgmey~~t~n~kLAe~Ff~~A~a-- 408 (611)
T KOG1173|consen 336 SKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-----HLPSLYLGMEYMRTNNLKLAEKFFKQALA-- 408 (611)
T ss_pred HHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-----cchHHHHHHHHHHhccHHHHHHHHHHHHh--
Confidence 999999999999999999988 8888899999999888887763 22244578888888999999999999888
Q ss_pred hhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC--
Q 001357 479 IWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ-- 556 (1093)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-- 556 (1093)
+.|.++.++..+|.+....+.+.+|..+|+.++..-+
T Consensus 409 -----------------------------------------i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 409 -----------------------------------------IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred -----------------------------------------cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 4577888888889888888899999999888884221
Q ss_pred -----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 557 -----DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 557 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
.....+.+||.++.+++.+.+|+.++++++.+.|.++.++..+|.+|..+|+++.|+..|.+++.+.|.
T Consensus 448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 234568888999999999999999999999999999999999999999999999999999999888876
No 38
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.91 E-value=2.9e-19 Score=194.34 Aligned_cols=444 Identities=15% Similarity=0.154 Sum_probs=289.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
..++..+.-.+..++|...++..+.+++..|.++..+...|..+...|+-++|..+...++..++.+ ...|..+|.++.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S-~vCwHv~gl~~R 86 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS-HVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc-chhHHHHHHHHh
Confidence 4566666667777778888888888888778887777777877778888888888888777777777 566777787777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHH
Q 001357 209 KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVE 288 (1093)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 288 (1093)
...+|++|+.+|..|+.+.|+|...|.-++.+..+.++ ++-....-.+.++..|.....|..++..++..|++..|.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd---~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRD---YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888777777777777 777777777777777777777777777777788887777
Q ss_pred HHHHHHHhccCCCCC-----chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHH
Q 001357 289 QLTETALAVTNHGPT-----KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALT 363 (1093)
Q Consensus 289 ~~~~~al~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 363 (1093)
.+.+...+.....+. ...+...........|.+++|++.+..--. ..-+........+.++++.+++++|+.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 777777655432222 234555667777788888888887765443 112233345567888999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh
Q 001357 364 NFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQ-ELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK 441 (1093)
Q Consensus 364 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~ 441 (1093)
.|...+..+|++...+..+-.++....+.-+++ ..|...-+..|.. .....++... ...++...+ .+.+...-.
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~-e~p~Rlplsvl~~eel~~~v---dkyL~~~l~ 316 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH-ECPRRLPLSVLNGEELKEIV---DKYLRPLLS 316 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc-ccchhccHHHhCcchhHHHH---HHHHHHHhh
Confidence 999999999999888888777775333334444 4555444433332 2222333322 222222222 222221111
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCC------
Q 001357 442 AGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDG------ 515 (1093)
Q Consensus 442 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------ 515 (1093)
.+. +.+..++-.+|-.-. . ..++++.+. ++...+...+
T Consensus 317 Kg~---p~vf~dl~SLyk~p~---k-~~~le~Lvt-----------------------------~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 317 KGV---PSVFKDLRSLYKDPE---K-VAFLEKLVT-----------------------------SYQHSLSGTGMFNFLD 360 (700)
T ss_pred cCC---CchhhhhHHHHhchh---H-hHHHHHHHH-----------------------------HHHhhcccccCCCccc
Confidence 111 122222222221111 1 112222221 1111111100
Q ss_pred -CCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh
Q 001357 516 -NHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN 594 (1093)
Q Consensus 516 -~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 594 (1093)
...+.+......++.++.-+...|+++.|..+...++...|..++.|...|.++...|++++|..++..+.+++-.+..
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 0011223345566777888899999999999999999999999999999999999999999999999998888766655
Q ss_pred HHHHhhhhhhcccchHHHHHHHHHh
Q 001357 595 ALSMLGDLELKNDDWVKAKETFRAA 619 (1093)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (1093)
+-.--+...++.++.++|..+..+.
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHh
Confidence 5555666666666666666665543
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.3e-22 Score=220.06 Aligned_cols=312 Identities=21% Similarity=0.250 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1093)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1093)
..+.++..+|..|..+... +..+|+..|.+.....++-..++..+|..|+..++|++|..+|+.+-...|-
T Consensus 315 ~l~~llr~~~~~~~~~s~y---------~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~ 385 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQY---------NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY 385 (638)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4566667777777665443 3568999999976667777777888999999999999999999999999987
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
.....-....++....+--+---+.+.++..+|+. +..|..+|.||..+++++.|+.+|+++++++|+...++..+|.=
T Consensus 386 rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s-PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE 464 (638)
T KOG1126|consen 386 RVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS-PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHE 464 (638)
T ss_pred cccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC-cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCCh
Confidence 77766667777777777665556667778888888 77899999999999999999999999999999999999999988
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCC
Q 001357 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (1093)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 320 (1093)
+....+ ++.|+.+|+.++..+|.+..+|+.+|.+|.++++++.|+-.|.+|+.. +|........+|.++.+.|+
T Consensus 465 ~~~~ee---~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I---NP~nsvi~~~~g~~~~~~k~ 538 (638)
T KOG1126|consen 465 SIATEE---FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI---NPSNSVILCHIGRIQHQLKR 538 (638)
T ss_pred hhhhHH---HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC---CccchhHHhhhhHHHHHhhh
Confidence 888777 999999999999999999988888888888888888888888888854 46777788888888888888
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1093)
Q Consensus 321 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1093)
.++|+.+|++|+. .+|..+.+.+..|.+++..+++++|+..++++-..-|+...+++.+|.+|.+.|+.+.|+..|.
T Consensus 539 ~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 539 KDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 8888888888887 5677777888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCHH
Q 001357 401 KAAKIDPRDAQ 411 (1093)
Q Consensus 401 ~~l~~~p~~~~ 411 (1093)
-+..++|.-..
T Consensus 616 ~A~~ldpkg~~ 626 (638)
T KOG1126|consen 616 WALDLDPKGAQ 626 (638)
T ss_pred HHhcCCCccch
Confidence 88888876544
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7.9e-20 Score=190.60 Aligned_cols=446 Identities=16% Similarity=0.177 Sum_probs=350.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh--------hhHhHHHHHH
Q 001357 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETK--------QREKEEHFIL 112 (1093)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~--------~~~r~~~~~~ 112 (1093)
..-+.+|..|+....++.|.-.|+...+.- .. .+.....+.. |..... ..........
T Consensus 79 ~~~y~laks~fd~kEf~Raa~fL~~~~s~k--~~----------FL~lysk~La--~~kk~~e~~~~~l~~~~~~~~~~~ 144 (559)
T KOG1155|consen 79 KDIYLLAKSYFDCKEFERAAFFLQNCKSKK--SA----------FLRLYSKYLA--GEKKSEEEMAELLGRLESFSRINS 144 (559)
T ss_pred cchhhhHhhhhhhHHHHHHHHHHHhcchHH--HH----------HHHHHHHHHh--hhHHHHHHHHHhhccchhhhhhhh
Confidence 356889999999999999999998764421 11 1111111111 110000 0001111123
Q ss_pred HHHHHHHHHhc----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 113 ATQYYNKASRI----DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRA 188 (1093)
Q Consensus 113 A~~~~~~a~~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~a 188 (1093)
.+..+++-+.. ...|+..++..|.++-..|....|+..|..++...|-+..+|..++.+... +......
T Consensus 145 ~l~~L~~~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l 217 (559)
T KOG1155|consen 145 ELIELNKPLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSIL 217 (559)
T ss_pred HHHHHhhHHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHH
Confidence 33333333322 234677888999999999999999999999999999999999999876532 3333334
Q ss_pred HHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001357 189 LQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1093)
Q Consensus 189 l~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1093)
....|.+ ....-+.++.++..+...++++.-++..+.. .|.+...-...|.+.....+ +++|+..|+.+.+.+|.
T Consensus 218 ~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rD---fD~a~s~Feei~knDPY 294 (559)
T KOG1155|consen 218 VVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRD---FDQAESVFEEIRKNDPY 294 (559)
T ss_pred HhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhh---HHHHHHHHHHHHhcCCC
Confidence 4334432 2333455788888888999999999998887 78888888888888888888 99999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHH
Q 001357 267 CAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYY 346 (1093)
Q Consensus 267 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 346 (1093)
...-+-.+.++++-..+-.+..-+...+.... .-.++++..+|..|...++.++|+.+|+++++ .+|....+|.
T Consensus 295 Rl~dmdlySN~LYv~~~~skLs~LA~~v~~id---KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWT 368 (559)
T KOG1155|consen 295 RLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID---KYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWT 368 (559)
T ss_pred cchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc---cCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHH
Confidence 88888888888888877766666666666544 44568889999999999999999999999998 7889999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001357 347 GLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (1093)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~ 425 (1093)
.+|.-|+.+.+...|+..|+.+++++|.+..+|+.+|+.|.-++...=|+-+|++++...|+++..|..||.+| ..++.
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~ 448 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL 448 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhh
Q 001357 426 GAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (1093)
Q Consensus 426 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1093)
++|++.|..++..... ...++..+|.+|-+.++..+|..+|.+.+.....
T Consensus 449 ~eAiKCykrai~~~dt-----e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~------------------------- 498 (559)
T KOG1155|consen 449 EEAIKCYKRAILLGDT-----EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL------------------------- 498 (559)
T ss_pred HHHHHHHHHHHhcccc-----chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-------------------------
Confidence 9999999999886322 4689999999999999999999999998873210
Q ss_pred hhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC
Q 001357 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD 557 (1093)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 557 (1093)
.....+....+...|+..+.+.+++++|..+...++.-.+.
T Consensus 499 -----------eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 499 -----------EGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred -----------hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 00134556667777999999999999999888877765443
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.2e-20 Score=194.66 Aligned_cols=364 Identities=17% Similarity=0.097 Sum_probs=296.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC--CcHHHHHH
Q 001357 196 PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNY 273 (1093)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p--~~~~~~~~ 273 (1093)
.+..++..|.++...|....|+..|..++...|-+..+|..|+.+...... .......-| .+.+.-..
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~----------~~~l~~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI----------LSILVVGLPSDMHWMKKFF 232 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH----------HHHHHhcCcccchHHHHHH
Confidence 367788899999999999999999999999999999999999876544322 222222233 34455556
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 001357 274 LANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQL 353 (1093)
Q Consensus 274 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~ 353 (1093)
+..++....+.+++..-....... ..|.....-...|.+.+...++++|+..|+...+ .+|-...-.-.+..+++
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~--gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k---nDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSV--GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK---NDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---cCCCcchhHHHHhHHHH
Confidence 677777777777777777766653 2456667777888999999999999999999988 45554444455556666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHH
Q 001357 354 KLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAF 432 (1093)
Q Consensus 354 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~ 432 (1093)
-..+-.+-.-+...+..++.--+++...+|.-|...++.++|+.+|+++++++|....+|..+|.-| ...+...|+..|
T Consensus 308 v~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 308 VKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 5555555555556677777777889999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhc
Q 001357 433 KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFE 512 (1093)
Q Consensus 433 ~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 512 (1093)
+.|+++.|. +...|+.+|..|.-++...=|+-+|++|..
T Consensus 388 RrAvdi~p~-----DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~------------------------------------ 426 (559)
T KOG1155|consen 388 RRAVDINPR-----DYRAWYGLGQAYEIMKMHFYALYYFQKALE------------------------------------ 426 (559)
T ss_pred HHHHhcCch-----hHHHHhhhhHHHHHhcchHHHHHHHHHHHh------------------------------------
Confidence 999998776 588999999999999999999999999988
Q ss_pred cCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Q 001357 513 NDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV---- 588 (1093)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 588 (1093)
..|.+..+|..+|.||.++++.++|+..|..++.....+..+++.||.+|...++..+|..+|.+.+..
T Consensus 427 -------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~e 499 (559)
T KOG1155|consen 427 -------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELE 499 (559)
T ss_pred -------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 678899999999999999999999999999999988888899999999999999999999999998883
Q ss_pred ---cCCChhHHHHhhhhhhcccchHHHHHHHHHhhhc
Q 001357 589 ---NGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1093)
Q Consensus 589 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 622 (1093)
.|....+...|+..+.+.+++++|..+...++.-
T Consensus 500 g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 500 GEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 3555667788999999999999998877766554
No 42
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.9e-21 Score=203.43 Aligned_cols=259 Identities=17% Similarity=0.194 Sum_probs=182.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCC
Q 001357 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSD 424 (1093)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~ 424 (1093)
.-.+|...++..++..|+..|..++.++ .+...+.+.+.+|+..|.+.+.+.....+++.......-+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klI-------- 297 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLI-------- 297 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHH--------
Confidence 4456666666666666666666666666 5666666666666666666666666555443322111111110
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhh
Q 001357 425 TGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKD 504 (1093)
Q Consensus 425 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1093)
...+..+|..|...++++.|+.+|.+++....
T Consensus 298 -----------------------ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R------------------------- 329 (539)
T KOG0548|consen 298 -----------------------AKALARLGNAYTKREDYEGAIKYYQKALTEHR------------------------- 329 (539)
T ss_pred -----------------------HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc-------------------------
Confidence 22333367778888999999999998876210
Q ss_pred hhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 505 MQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNE 584 (1093)
Q Consensus 505 ~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 584 (1093)
. ..++......++++.......-.+|.-..-...-|..++..|+|..|+..|.+
T Consensus 330 -------------------t-------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 330 -------------------T-------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred -------------------C-------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 1 33444555667777777776667777766666778888888889999988888
Q ss_pred HHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHH
Q 001357 585 ALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELY 664 (1093)
Q Consensus 585 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~ 664 (1093)
++..+|+++.++.+.+.||.++|.+..|+...+.++++.|. ..-+++.-|.+ ++.+ .+|++|++.|
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~a-l~~m------------k~ydkAleay 449 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAA-LRAM------------KEYDKALEAY 449 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHH-HHHH------------HHHHHHHHHH
Confidence 88888888888888888888888888888888888888765 66677777777 7777 8899999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHH
Q 001357 665 TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQ 700 (1093)
Q Consensus 665 ~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 700 (1093)
+.+++.+|++..+..++..++..+........+.++
T Consensus 450 ~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 450 QEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999999998888888887777755444444445544
No 43
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.91 E-value=2.4e-18 Score=190.95 Aligned_cols=414 Identities=20% Similarity=0.182 Sum_probs=325.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001357 313 RSYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390 (1093)
Q Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 390 (1093)
.++.-..+.++++-.....+.... .-......|-.+...+...|++..+.+.|++++...-...+.|+.++.+|...|
T Consensus 292 es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag 371 (799)
T KOG4162|consen 292 ESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAG 371 (799)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhc
Confidence 334444455555554444333211 122345567778888999999999999999999877777899999999999999
Q ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC----
Q 001357 391 QIEKAQELLRKAAKID--PRDAQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG---- 462 (1093)
Q Consensus 391 ~~~~A~~~l~~~l~~~--p~~~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g---- 462 (1093)
....|+.+++..+... |+++..+...+.++ ..+..++++.+..+++...........+..+..+|.+|..+-
T Consensus 372 ~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~ 451 (799)
T KOG4162|consen 372 SDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQAN 451 (799)
T ss_pred cchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCC
Confidence 9999999999999988 88888888888877 889999999999999997655445556778888888876542
Q ss_pred -------CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHH
Q 001357 463 -------EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535 (1093)
Q Consensus 463 -------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 535 (1093)
...++++.+++++. ..|.++.+.+.++.-|
T Consensus 452 ~~seR~~~h~kslqale~av~-------------------------------------------~d~~dp~~if~lalq~ 488 (799)
T KOG4162|consen 452 LKSERDALHKKSLQALEEAVQ-------------------------------------------FDPTDPLVIFYLALQY 488 (799)
T ss_pred ChHHHHHHHHHHHHHHHHHHh-------------------------------------------cCCCCchHHHHHHHHH
Confidence 24456666666666 5678889999999999
Q ss_pred HhcCChHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHH
Q 001357 536 EQIHDTVAASVLYRLILFKYQ-DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 614 (1093)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 614 (1093)
...++...|.....+++..++ +.+.+|..++.++...+++.+|+.+...++.-.|.|.........+....++.++|+.
T Consensus 489 A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~ 568 (799)
T KOG4162|consen 489 AEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALD 568 (799)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHH
Confidence 999999999999999999955 5689999999999999999999999999999999876665555555555566665555
Q ss_pred HHHHhhhcCC--------------------------------------------------------------CCCh----
Q 001357 615 TFRAASDATD--------------------------------------------------------------GKDS---- 628 (1093)
Q Consensus 615 ~~~~~l~~~~--------------------------------------------------------------~~d~---- 628 (1093)
.+...+.... .++.
T Consensus 569 t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~ 648 (799)
T KOG4162|consen 569 TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYL 648 (799)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHH
Confidence 5444332111 0000
Q ss_pred --HHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhc
Q 001357 629 --YATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706 (1093)
Q Consensus 629 --~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 706 (1093)
..++..+.. |... ++.++|..++.++-..+|..++.++..|.++...|+..+|...|..++..+|
T Consensus 649 ~~~lwllaa~~-~~~~------------~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 649 LQKLWLLAADL-FLLS------------GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred HHHHHHHHHHH-HHhc------------CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 011111222 2222 7778888888888889999999999999999999999999999999999998
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCHHHHHH--HHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCc
Q 001357 707 GSVFVQMPDVWINLAHVYFAQGNFALAMK--MYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (1093)
Q Consensus 707 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 784 (1093)
+++.+...+|.++.+.|+..-|.. ++..+++. ++.++++|++||.++.+.|+...|..+|.-++++.+.+|
T Consensus 716 -----~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 716 -----DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred -----CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 778889999999999998888888 89999988 778899999999999999999999999999999999888
Q ss_pred chhhH
Q 001357 785 TLRFD 789 (1093)
Q Consensus 785 ~~~~~ 789 (1093)
...|.
T Consensus 789 V~pFs 793 (799)
T KOG4162|consen 789 VLPFS 793 (799)
T ss_pred ccccc
Confidence 76654
No 44
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.4e-18 Score=181.13 Aligned_cols=482 Identities=17% Similarity=0.190 Sum_probs=332.5
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001357 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1093)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1093)
..|+..++.+.-+...|+..|.--..++++..|..+|+++|..+..+...|+..+.+-++......|..++.+++..-|.
T Consensus 60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 44555666666677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001357 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1093)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~l 274 (1093)
. ...|+....+--.+|+...|+++|++.+...| +..+|......-+..++ ++.|...|++.+-.+|+ ...|...
T Consensus 140 V-dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRyke---ieraR~IYerfV~~HP~-v~~wiky 213 (677)
T KOG1915|consen 140 V-DQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKE---IERARSIYERFVLVHPK-VSNWIKY 213 (677)
T ss_pred H-HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhH---HHHHHHHHHHHheeccc-HHHHHHH
Confidence 8 77889889999999999999999999999999 56788888888888777 89999999998887764 4566666
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q 001357 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1093)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1093)
+..-...|+...+..+|+.++............+...|..-..+..++.|.-+|.-+++.+|.+.. ...+-.+...--+
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra-eeL~k~~~~fEKq 292 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA-EELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHH
Confidence 777777777777777777777655444444444555555555666666666666666664332110 1111111111122
Q ss_pred cCCH---HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHH
Q 001357 355 LGDF---RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALD 430 (1093)
Q Consensus 355 ~g~~---~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~ 430 (1093)
-|+. +.++.. +-.--|++.+..+|-+.++|+.+..+. ..|+.+.-.+
T Consensus 293 fGd~~gIEd~Iv~-----------------------------KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 293 FGDKEGIEDAIVG-----------------------------KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred hcchhhhHHHHhh-----------------------------hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence 2221 122110 011123444444555555555555544 4455555555
Q ss_pred HHHHHHHHHHhcCCCCC----HHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhh
Q 001357 431 AFKTARTLLKKAGEEVP----IEVLNNIGV-IHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDM 505 (1093)
Q Consensus 431 ~~~~a~~~~~~~~~~~~----~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1093)
.|++++...|....... ..+|.+.+. .-+...+.+.+..+|+.++++-|..
T Consensus 344 ~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk------------------------ 399 (677)
T KOG1915|consen 344 TYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK------------------------ 399 (677)
T ss_pred HHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc------------------------
Confidence 55555443332111100 112222221 2235577888888888888754321
Q ss_pred hhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 506 QLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1093)
Q Consensus 506 ~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 585 (1093)
.-..+.+|...|.....+.+...|..++-.++..+|.+ ..+-....+-.++++++.+..+|++.
T Consensus 400 ---------------kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 400 ---------------KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred ---------------cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 12356788888888888999999999999999999975 45555566677889999999999999
Q ss_pred HHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHH
Q 001357 586 LKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYT 665 (1093)
Q Consensus 586 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~ 665 (1093)
+...|.+..+|...|.+-..+|+++.|..+|.-+++.... +..-++ ... |... ..+.|.+++|..+|+
T Consensus 464 le~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l-dmpell--wka-YIdF--------Ei~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 464 LEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPAL-DMPELL--WKA-YIDF--------EIEEGEFEKARALYE 531 (677)
T ss_pred HhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc-ccHHHH--HHH-hhhh--------hhhcchHHHHHHHHH
Confidence 9999999999999999999999999999999998876433 333332 222 3322 112377888888888
Q ss_pred HHHhhCCCCHHHHHHHHHHH
Q 001357 666 RVIVQHTSNLYAANGAGVVL 685 (1093)
Q Consensus 666 ~~l~~~p~~~~a~~~la~~~ 685 (1093)
++|...+... +|...|..-
T Consensus 532 rlL~rt~h~k-vWisFA~fe 550 (677)
T KOG1915|consen 532 RLLDRTQHVK-VWISFAKFE 550 (677)
T ss_pred HHHHhcccch-HHHhHHHHh
Confidence 8888776544 555544443
No 45
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.9e-20 Score=215.38 Aligned_cols=300 Identities=20% Similarity=0.126 Sum_probs=223.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIG 204 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~la 204 (1093)
....+.+|..+...|++++|+..|.+++..+|+++.++..+|.++...|++++|+.+++.++...+.. ...++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999998854332 125678899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHH
Q 001357 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM-----ALNYLANHFF 279 (1093)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~-----~~~~la~~~~ 279 (1093)
.+|...|+++.|+..|.+++..+|.+..++..++.++...|+ +++|+..+.+++...|.+.. .+..++.++.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 99999999999988776532 3445666667
Q ss_pred HcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHHcCCH
Q 001357 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEF-IFPYYGLGQVQLKLGDF 358 (1093)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~la~~~~~~g~~ 358 (1093)
..|++++|+.++.+++... |....+++.+|.++...|++++|+.+|.+++.. .|.. ..++..++.+|...|++
T Consensus 192 ~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCH
Confidence 7777777777777766543 344566666777777777777777777776652 2222 34455666677777777
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h--cCCHHHHHHHHHHH
Q 001357 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I--SSDTGAALDAFKTA 435 (1093)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~--~~~~~~A~~~~~~a 435 (1093)
++|+..+++++...|+... +..++.++...|++++|+..|.+++...|++......+...+ . .|+..+++..++++
T Consensus 266 ~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 266 AEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 7777777777766665433 366677777777777777777777776666654443343333 1 34566666666655
Q ss_pred HH
Q 001357 436 RT 437 (1093)
Q Consensus 436 ~~ 437 (1093)
++
T Consensus 345 ~~ 346 (389)
T PRK11788 345 VG 346 (389)
T ss_pred HH
Confidence 54
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.2e-21 Score=214.45 Aligned_cols=292 Identities=20% Similarity=0.200 Sum_probs=177.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQA 219 (1093)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 219 (1093)
.+-+..+|+.+|.+.....++...++..+|..||.+++|++|..+|+.+-+..|-.. .-.-....++|++.+.-+--.+
T Consensus 331 s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv-~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV-KGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cchhHHHHHHHHHHhhHHHHHH
Confidence 334556666666665555555566666666666666666666666666666666542 1122244455555544444444
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 001357 220 FQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (1093)
Q Consensus 220 ~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 299 (1093)
-+..+..+|+.+..|..+|.++..+++ ++.|+++|++++.++|...
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkd---h~~Aik~f~RAiQldp~fa------------------------------- 455 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKD---HDTAIKCFKRAIQLDPRFA------------------------------- 455 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhH---HHHHHHHHHHhhccCCccc-------------------------------
Confidence 455555666666666666666666665 6666666666666666555
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 001357 300 HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETL 379 (1093)
Q Consensus 300 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 379 (1093)
.+|..+|.-+.....++.|..+|+.++. .+|....+|+++|.+|.++++++.|.-.|++++.++|.+....
T Consensus 456 ------YayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~ 526 (638)
T KOG1126|consen 456 ------YAYTLLGHESIATEEFDKAMKSFRKALG---VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVIL 526 (638)
T ss_pred ------hhhhhcCChhhhhHHHHhHHHHHHhhhc---CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHH
Confidence 4555555555555666666666666665 4555566666666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001357 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIH 458 (1093)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~ 458 (1093)
..+|.++.+.|+.++|+.+|++++.++|.++-..+..+.++ ..+++.+|+..+++...+.|+ ...+++.+|.+|
T Consensus 527 ~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-----es~v~~llgki~ 601 (638)
T KOG1126|consen 527 CHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ-----ESSVFALLGKIY 601 (638)
T ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-----hHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666 666666666666666665554 255666666666
Q ss_pred HHcCCHHHHHHHHHHHHhcchh
Q 001357 459 FEKGEFESAHQSFKDALGDGIW 480 (1093)
Q Consensus 459 ~~~g~~~~A~~~~~~al~~~~~ 480 (1093)
.+.|+.+.|+..|.-|..+.|.
T Consensus 602 k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 602 KRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHccchHHHHhhHHHhcCCCc
Confidence 6666666666666666665543
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=5.4e-20 Score=211.58 Aligned_cols=299 Identities=15% Similarity=0.096 Sum_probs=255.3
Q ss_pred HHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 001357 85 ILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--- 161 (1093)
Q Consensus 85 ~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--- 161 (1093)
..+.+|..+...|... +|+..|.+++..+|.++.+++.+|.++...|++++|+..++.++...+..
T Consensus 37 ~~y~~g~~~~~~~~~~-----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 105 (389)
T PRK11788 37 RDYFKGLNFLLNEQPD-----------KAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ 105 (389)
T ss_pred HHHHHHHHHHhcCChH-----------HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH
Confidence 3444566666666555 89999999999999999999999999999999999999999998754332
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----HHHH
Q 001357 162 -VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV-----EALV 235 (1093)
Q Consensus 162 -~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~ 235 (1093)
..++..+|.++...|++++|+.+|.+++...|.. ..++..++.++...|++++|+..|.+++...|.+. ..+.
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 184 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA-EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYC 184 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch-HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 3578899999999999999999999999998887 67789999999999999999999999999888753 2456
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 001357 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315 (1093)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 315 (1093)
.++.++...|+ +.+|+..|.++++.+|.+..++..++.++...|++++|+.++.+++...+ .....++..++.+|
T Consensus 185 ~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~l~~~~ 259 (389)
T PRK11788 185 ELAQQALARGD---LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP--EYLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHhCCC---HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh--hhHHHHHHHHHHHH
Confidence 78888888888 99999999999999999999999999999999999999999999996532 22346678899999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHH
Q 001357 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ--LGQIE 393 (1093)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--~g~~~ 393 (1093)
...|++++|+..+.+++.. .|+.. .+..++.++...|++++|+..|+++++.+|++..+...++..+.. .|+..
T Consensus 260 ~~~g~~~~A~~~l~~~~~~---~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~ 335 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEE---YPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAK 335 (389)
T ss_pred HHcCCHHHHHHHHHHHHHh---CCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccch
Confidence 9999999999999999974 34443 448899999999999999999999999999887666555544432 45888
Q ss_pred HHHHHHHHHHH
Q 001357 394 KAQELLRKAAK 404 (1093)
Q Consensus 394 ~A~~~l~~~l~ 404 (1093)
+++..++++++
T Consensus 336 ~a~~~~~~~~~ 346 (389)
T PRK11788 336 ESLLLLRDLVG 346 (389)
T ss_pred hHHHHHHHHHH
Confidence 99988888775
No 48
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.2e-19 Score=193.94 Aligned_cols=435 Identities=18% Similarity=0.167 Sum_probs=296.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.|+|..|+.+|..++.++|.+...+.++..+|...|+|++|+..-.+.+.++|+.+.+|..+|..++-.|+|++|+..|.
T Consensus 15 ~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~ 94 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYS 94 (539)
T ss_pred cccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHH
Confidence 45566888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1093)
+.|..+|++ ..+..+++.++.-. +. +...| ..+..|..++..-....- -.+.+...+...+..+|.
T Consensus 95 ~GL~~d~~n-~~L~~gl~~a~~~~--~~-~~~~~--------~~p~~~~~l~~~p~t~~~--~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 95 EGLEKDPSN-KQLKTGLAQAYLED--YA-ADQLF--------TKPYFHEKLANLPLTNYS--LSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HHhhcCCch-HHHHHhHHHhhhHH--HH-hhhhc--------cCcHHHHHhhcChhhhhh--hccHHHHHHHHHhhcCcH
Confidence 888888888 66677777666111 10 00000 122222222211111100 012222223333333333
Q ss_pred cHHHHHH-------HHHHHHHcCChHHHHHHHHHHHhccCCCC---------C------------chHHHHHHHHHHHhc
Q 001357 267 CAMALNY-------LANHFFFTGQHFLVEQLTETALAVTNHGP---------T------------KSHSYYNLARSYHSK 318 (1093)
Q Consensus 267 ~~~~~~~-------la~~~~~~g~~~~A~~~~~~al~~~~~~~---------~------------~~~~~~~la~~~~~~ 318 (1093)
+...+.. ++.+. |........-..........| . .....-.+|...+..
T Consensus 161 ~l~~~l~d~r~m~a~~~l~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLK---GVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred hhhcccccHHHHHHHHHHh---cCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 3222111 11110 000000000000000000000 0 123456789999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCC
Q 001357 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC-------ETLKALGHIYVQLGQ 391 (1093)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~ 391 (1093)
.++..|++.|..++. .. ....-+.+.+.+|+..|.+...+..+..+++...... .++..+|..|...++
T Consensus 238 k~f~~a~q~y~~a~e---l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 238 KDFETAIQHYAKALE---LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hhHHHHHHHHHHHHh---Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHh
Confidence 999999999999997 33 4555678899999999999999999999887654332 334446667777889
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 392 IEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (1093)
Q Consensus 392 ~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 470 (1093)
++.|+.+|.+++..... ..++ .....++++.......-+.|.. ..-...-|..++..|+|..|+..
T Consensus 314 ~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~-----A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEK-----AEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhH-----HHHHHHHHHHHHhccCHHHHHHH
Confidence 99999999998765433 2233 3344455555444433332321 34445569999999999999999
Q ss_pred HHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001357 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRL 550 (1093)
Q Consensus 471 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 550 (1093)
|.+++. ..|.+...+.|.|.||..+|.+..|+...+.
T Consensus 381 YteAIk-------------------------------------------r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~ 417 (539)
T KOG0548|consen 381 YTEAIK-------------------------------------------RDPEDARLYSNRAACYLKLGEYPEALKDAKK 417 (539)
T ss_pred HHHHHh-------------------------------------------cCCchhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999998 5689999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHH
Q 001357 551 ILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 618 (1093)
Q Consensus 551 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1093)
+++++|+...+|++-|.++....+|+.|+..|++++..+|.+.++...+..+...+..........++
T Consensus 418 ~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 418 CIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999888888887654333333344444
No 49
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.88 E-value=2.5e-19 Score=179.30 Aligned_cols=345 Identities=18% Similarity=0.185 Sum_probs=274.8
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG 202 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 202 (1093)
.+|.+..-.+.+|..++..|++..|+..|..++..+|++..+++..|.+|..+|+-.-|+..+.+++.+.|+. ..+++.
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF-~~ARiQ 111 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF-MAARIQ 111 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH-HHHHHH
Confidence 3466777889999999999999999999999999999999999999999999999999999999999999999 778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEA---LVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1093)
.|.+++++|.++.|..-|..++..+|++... ...++.+...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~------------------------------------ 155 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH------------------------------------ 155 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH------------------------------------
Confidence 9999999999999999999999999965432 2222211100
Q ss_pred HcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHH
Q 001357 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFR 359 (1093)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 359 (1093)
..+......++..|++..|+.+....+. ..|..+..+...+.||...|...
T Consensus 156 --------------------------~~l~~ql~s~~~~GD~~~ai~~i~~llE---i~~Wda~l~~~Rakc~i~~~e~k 206 (504)
T KOG0624|consen 156 --------------------------WVLVQQLKSASGSGDCQNAIEMITHLLE---IQPWDASLRQARAKCYIAEGEPK 206 (504)
T ss_pred --------------------------HHHHHHHHHHhcCCchhhHHHHHHHHHh---cCcchhHHHHHHHHHHHhcCcHH
Confidence 1122223345566788888888888887 56777777888899999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 001357 360 SALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLL 439 (1093)
Q Consensus 360 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~ 439 (1093)
.||.-+..+-++..++.+.++.++.+++..|+.+.++...+.+++++|++-..+-. |++..++.
T Consensus 207 ~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~----------------YKklkKv~ 270 (504)
T KOG0624|consen 207 KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF----------------YKKLKKVV 270 (504)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH----------------HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987554422 22222211
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcC
Q 001357 440 KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVE 519 (1093)
Q Consensus 440 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 519 (1093)
+. ..-+......++|.+++...++.+...|.
T Consensus 271 K~----------les~e~~ie~~~~t~cle~ge~vlk~ep~--------------------------------------- 301 (504)
T KOG0624|consen 271 KS----------LESAEQAIEEKHWTECLEAGEKVLKNEPE--------------------------------------- 301 (504)
T ss_pred HH----------HHHHHHHHhhhhHHHHHHHHHHHHhcCCc---------------------------------------
Confidence 11 01122344567788888888888874221
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHH
Q 001357 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSM 598 (1093)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 598 (1093)
..+......-.+..|+..-+++.+|+..+.+++..+|+++.++...+..|+....|+.|+.-|+++...++++..+...
T Consensus 302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 302 ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred ccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 1122333444566788888999999999999999999999999999999999999999999999999999998776544
No 50
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=8.4e-19 Score=194.58 Aligned_cols=437 Identities=17% Similarity=0.139 Sum_probs=337.2
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHH
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGI 203 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~l 203 (1093)
+++.+|-.+...+...|++..+.+.|++++...-.....|+.++.++...|.-..|+.+++..+... |.++....+.-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 6778888889999999999999999999998877788999999999999999999999999999988 77767777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-----CcHHHHHHHHHHHHHhhh--------HHhHHHHHHHHHHHHHhCCCcHHH
Q 001357 204 GLCRYKLGQLGKARQAFQRALQLDP-----ENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMA 270 (1093)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~la~~~~~~~~--------~~~~~~Al~~~~~al~~~p~~~~~ 270 (1093)
..|+-..+..++++.+..+++...- -.+.++..+|.+|...-. .....++++.++++++.+|.|+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 7888899999999999999998431 135567777777755422 123678999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q 001357 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1093)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1093)
.++++.-|...++...|......++...+ ...+.+|..++.++...+++..|+.+...++...+ .+.........
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~---~N~~l~~~~~~ 555 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG---DNHVLMDGKIH 555 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh---hhhhhchhhhh
Confidence 99999999999999999999999998743 34568999999999999999999999999998543 33334455556
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH---------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Q 001357 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKALG---------HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL- 420 (1093)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la---------~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~- 420 (1093)
+-...++.++|+..+...+........+-..++ .+....++..+|...+.++... ...-
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l-----------~a~~~ 624 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL-----------VASQL 624 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH-----------HHhhh
Confidence 666789999999999888876543333333333 1111111222222222222111 0000
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhh
Q 001357 421 ISSDTGAALDAFKTARTLLKKAGEE--VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASAS 498 (1093)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 498 (1093)
..-..+..+ .+ ....+..... ....+|...+..+...++.++|..++.++..
T Consensus 625 ~~~~se~~L---p~-s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---------------------- 678 (799)
T KOG4162|consen 625 KSAGSELKL---PS-STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---------------------- 678 (799)
T ss_pred hhccccccc---Cc-ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh----------------------
Confidence 000000000 00 0000000000 0135677788899999999999999999987
Q ss_pred HHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHH
Q 001357 499 MLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLS 578 (1093)
Q Consensus 499 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 578 (1093)
+.|..+.+++..|.++...|+..+|...|..++..+|+++.+...+|.++...|+..-|
T Consensus 679 ---------------------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la 737 (799)
T KOG4162|consen 679 ---------------------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLA 737 (799)
T ss_pred ---------------------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchH
Confidence 45678899999999999999999999999999999999999999999999999998888
Q ss_pred HH--HHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 579 IE--LVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 579 ~~--~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
.. ++..+++++|.++++|+.+|.++.+.|+...|..+|..++++.+.
T Consensus 738 ~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 738 EKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 87 999999999999999999999999999999999999999997765
No 51
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.88 E-value=7.7e-17 Score=175.66 Aligned_cols=617 Identities=14% Similarity=0.075 Sum_probs=407.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.++|...++..+.+++..|.+++++...|..+...|+-++|..+....+..++.+..+|..+|.++....+|++|+++|+
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC--
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY-- 264 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~-- 264 (1093)
.++...|++ ..++..++.+..++++++-......+.+++.|.....|+.++..+.-.|+ +..|+..++...+..
T Consensus 100 nAl~~~~dN-~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~---y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 100 NALKIEKDN-LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE---YKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHhcCCCc-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcc
Confidence 999999999 78899999999999999999999999999999999999999999999998 888888777766554
Q ss_pred -CCc-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 001357 265 -PYC-----AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP 338 (1093)
Q Consensus 265 -p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 338 (1093)
|.. ..............|.++.|.+.+...-. ...+........+..+..++++++|..+|...+. .+
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~---~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~---rn 249 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK---QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE---RN 249 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh---HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh---hC
Confidence 332 23444455666778888877776654332 1223344566789999999999999999999998 67
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHH
Q 001357 339 HEFIFPYYGLGQVQLKLGDFRSAL-TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQE-LLRKAAKIDPRDAQAFIDL 416 (1093)
Q Consensus 339 ~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~-~l~~~l~~~p~~~~~~~~l 416 (1093)
|++...+..+-.++....+--+++ ..|...-+..|. ......++.....-.++...+. ++...+ ....+.+...+
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l--~Kg~p~vf~dl 326 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLL--SKGVPSVFKDL 326 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHh--hcCCCchhhhh
Confidence 888777777766665334444455 444444443333 3333334333333333333332 222222 23334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhcC--C-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchh
Q 001357 417 GELLISSDTGAALDAFKTARTLLKKAG--E-----------EVP---IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIW 480 (1093)
Q Consensus 417 a~~~~~~~~~~A~~~~~~a~~~~~~~~--~-----------~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 480 (1093)
-.+|.. +.. ..++++.+......- . ..+ ...++.++..+...|+++.|..++..|+.
T Consensus 327 ~SLyk~--p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---- 399 (700)
T KOG1156|consen 327 RSLYKD--PEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---- 399 (700)
T ss_pred HHHHhc--hhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc----
Confidence 555511 111 113333333222110 0 011 35667788899999999999999999998
Q ss_pred hhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHH
Q 001357 481 LTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVD 560 (1093)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 560 (1093)
..|..+..+...|+++...|.+++|..++..+.+.+-.+.-
T Consensus 400 ---------------------------------------HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 400 ---------------------------------------HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred ---------------------------------------cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 55778899999999999999999999999999988776544
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh-------hHHHH--hhhhhhcccchHHHHHHHHHhhhcCCC-----C
Q 001357 561 AYLRLAAIAKARNNLQLSIELVNEALKVNGKYP-------NALSM--LGDLELKNDDWVKAKETFRAASDATDG-----K 626 (1093)
Q Consensus 561 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~--l~~~~~~~g~~~~A~~~~~~~l~~~~~-----~ 626 (1093)
.-..-+....+.++.++|...+....+..-+-. -.|+. -|..|.++|++..|++-|..+-..... -
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqf 520 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQF 520 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhh
Confidence 444566777788899999988877655442111 14443 367788888998888887765543211 1
Q ss_pred ChHHHHHh---HhHHHHHHHhhcc--cCchHHHHHHHHHHHHHHHHHhhCCC-C---HHHHHHHH----HHHHh-cCCch
Q 001357 627 DSYATLSL---GNWNYFAALRNEK--RAPKLEATHLEKAKELYTRVIVQHTS-N---LYAANGAG----VVLAE-KGQFD 692 (1093)
Q Consensus 627 d~~~~~~l---~~~~y~~~~~~~~--~~~~~~~~~~~~A~~~~~~~l~~~p~-~---~~a~~~la----~~~~~-~g~~~ 692 (1093)
|..+++.- -.. |....+-.. .+...-..-...|+++|-++... |+ + ..-.-.+. .+... ...-.
T Consensus 521 Dfhtyc~rk~tlrs-Yv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~-p~~~~~~~~~~~~ms~e~kk~~~k~rk~~k 598 (700)
T KOG1156|consen 521 DFHTYCMRKGTLRS-YVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDS-PNMYTNKADEIEKMSDEEKKIKKKQRKAKK 598 (700)
T ss_pred hHHHHHHhcCcHHH-HHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcC-cccccccchhhhhccHHHHHHHHHHHHHHH
Confidence 22221100 000 111111000 00000012234566666665543 31 0 00111111 01100 01111
Q ss_pred hHHHHHHHHHH----Hhc-CCCCCCchhHHHHHHHHHHHhcC-HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccH
Q 001357 693 VSKDLFTQVQE----AAS-GSVFVQMPDVWINLAHVYFAQGN-FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQW 766 (1093)
Q Consensus 693 ~A~~~~~~~~~----~~p-~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~ 766 (1093)
.|...-.+.-+ ..+ .+..+..++. --.|+-+..... ..+|..++..+... .+..+..+.....+|++.|++
T Consensus 599 k~~~e~~~~~~~~~~~~~s~~~~~~~~d~-~~~gekL~~t~~Pl~ea~kf~~~l~~~--~~~~~~~~iL~~ely~rk~k~ 675 (700)
T KOG1156|consen 599 KAKKEAKKKKDKKKKEAKSQSGKPVDIDE-DPFGEKLLKTEDPLEEARKFLPNLQHK--GKEKGETYILSFELYYRKGKF 675 (700)
T ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCC-cchhhhHhhcCChHHHHHHHHHHHHHh--cccchhhhhhhHHHHHHHHHH
Confidence 11111111111 011 0111111111 145666655543 46688888777665 566688888889999999999
Q ss_pred HHHHHHHHHHHHhCCCCcchh
Q 001357 767 QDCKKSLLRAIHLAPSNYTLR 787 (1093)
Q Consensus 767 ~~A~~~~~~al~~~P~~~~~~ 787 (1093)
.-|.+++.++-.+.+..+.+.
T Consensus 676 ~l~~~~~~~~~~~~~~~~~l~ 696 (700)
T KOG1156|consen 676 LLALACLNNAEGIHGTHPSLH 696 (700)
T ss_pred HHHHHHHHhhhhhcCCCCcch
Confidence 999999999999988876653
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.87 E-value=2e-19 Score=180.04 Aligned_cols=323 Identities=16% Similarity=0.108 Sum_probs=272.4
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001357 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN 161 (1093)
Q Consensus 82 ~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (1093)
.+.-+.-||.-++..|.+. .|+..|..++..+|++..+++.+|.+|+..|+..-|+..|.+++++.|+.
T Consensus 37 dvekhlElGk~lla~~Q~s-----------DALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF 105 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLS-----------DALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDF 105 (504)
T ss_pred HHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccH
Confidence 3444555666666555544 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--------------AIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (1093)
..+.+..|.+++++|.++.|...|..++..+|++.. .........++..|+...|+.....++++.
T Consensus 106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 106 MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ 185 (504)
T ss_pred HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC
Confidence 999999999999999999999999999999996511 112234455667799999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHH
Q 001357 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1093)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 307 (1093)
|-++..+...+.+|...|+ ...||..+..+-++..++...++.++.+++..|+.+.++......++..+........
T Consensus 186 ~Wda~l~~~Rakc~i~~~e---~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~ 262 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGE---PKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF 262 (504)
T ss_pred cchhHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999876544332222
Q ss_pred HHH---------HHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 001357 308 YYN---------LARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE 377 (1093)
Q Consensus 308 ~~~---------la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 377 (1093)
|-. -+......++|.+++...++.++.-+. .+-....+-.+..|+...|++.+|+..+..++..+|+++.
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence 222 244456678899999999998873222 1122334555778889999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001357 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1093)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~ 418 (1093)
++...+.+|+....|+.|+..|+++...++++..+.-.+-.
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~ 383 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLER 383 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 99999999999999999999999999999988777655443
No 53
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1e-17 Score=172.00 Aligned_cols=434 Identities=16% Similarity=0.106 Sum_probs=316.8
Q ss_pred hHHHHHHHHHHHHHHHhc--------------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001357 106 KEEHFILATQYYNKASRI--------------------DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL 165 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~--------------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 165 (1093)
++..|..|.+.|..++++ .|.+.......+.+|...++-+.|+..+..+...- ..+...
T Consensus 55 h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~in 133 (564)
T KOG1174|consen 55 KERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRIN 133 (564)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHH
Confidence 356677788888777643 23455666778889999999999988887664332 345666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH---HHHHHHH
Q 001357 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV---ALAVMDL 242 (1093)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~---~la~~~~ 242 (1093)
+.++..+..-++-.++.-.|..++...|-.... . .|.+-....-++.+-. -..++...|.....|. .++.++.
T Consensus 134 lMla~l~~~g~r~~~~vl~ykevvrecp~aL~~-i--~~ll~l~v~g~e~~S~-~m~~~~~~~~~dwls~wika~Aq~~~ 209 (564)
T KOG1174|consen 134 LMLARLQHHGSRHKEAVLAYKEVIRECPMALQV-I--EALLELGVNGNEINSL-VMHAATVPDHFDWLSKWIKALAQMFN 209 (564)
T ss_pred HHHHHHHhccccccHHHHhhhHHHHhcchHHHH-H--HHHHHHhhcchhhhhh-hhhheecCCCccHHHHHHHHHHHHHh
Confidence 677777766666667777777777766643111 1 1111111111111111 1122334454443332 2333333
Q ss_pred HhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHH
Q 001357 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1093)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1093)
.... +.-+..++-.-....|++...+..+|.+++..|++.+|+..|+++... +|....+.-..|..+...|+++
T Consensus 210 ~~hs---~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 210 FKHS---DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred cccc---hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHh
Confidence 3222 444555566666777889999999999999999999999999888754 3666677777788888889888
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1093)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 402 (1093)
+--.+....+. ........|+.-+..++..+++..|+.+-++++..+|.+..++...|.++...++.++|+-.|+.+
T Consensus 284 ~~~~L~~~Lf~---~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 284 QDSALMDYLFA---KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hHHHHHHHHHh---hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 87777766665 334455668888888899999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH-HH-HHHcCCHHHHHHHHHHHHhcch
Q 001357 403 AKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIG-VI-HFEKGEFESAHQSFKDALGDGI 479 (1093)
Q Consensus 403 l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la-~~-~~~~g~~~~A~~~~~~al~~~~ 479 (1093)
..+.|.....|..|..+| ..+.+.+|......+++.++.. ...+..+| .+ +..----++|..++++++.
T Consensus 361 q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~s-----A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--- 432 (564)
T KOG1174|consen 361 QMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNS-----ARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--- 432 (564)
T ss_pred HhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcc-----hhhhhhhcceeeccCchhHHHHHHHHHhhhc---
Confidence 999999999999999999 8999999998888888887763 56666664 33 3333446778888888887
Q ss_pred hhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChH
Q 001357 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYV 559 (1093)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 559 (1093)
..|....+...+|.++...|.+..++.++++.+...|+.
T Consensus 433 ----------------------------------------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~- 471 (564)
T KOG1174|consen 433 ----------------------------------------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV- 471 (564)
T ss_pred ----------------------------------------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-
Confidence 567888888889999999999999999999999888875
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhh
Q 001357 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (1093)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 602 (1093)
..+..||.++...+.+.+|...|..++.++|++..+...+-.+
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 6788899999999999999999999999999887766555443
No 54
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.5e-17 Score=168.22 Aligned_cols=314 Identities=16% Similarity=0.088 Sum_probs=251.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001357 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLG 390 (1093)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 390 (1093)
.+.+.+..++...|...+--+-. ...-+.++..+..+|.+++..|++.+|+..|+++..++|.+...+-..|.++.+.|
T Consensus 202 ka~Aq~~~~~hs~a~~t~l~le~-~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg 280 (564)
T KOG1174|consen 202 KALAQMFNFKHSDASQTFLMLHD-NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEG 280 (564)
T ss_pred HHHHHHHhcccchhhhHHHHHHh-hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhcc
Confidence 34444444554444444433321 11456777778888999999999999999999999999988888888888888999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001357 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQ 469 (1093)
Q Consensus 391 ~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 469 (1093)
+++.-..+...++........-|+.-+.++ ...++..|+.+-.+++...+. ....+...|.++...|+.++|+-
T Consensus 281 ~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-----~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 281 GCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-----NHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred CHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-----cchHHHhccHHHHhccchHHHHH
Confidence 988888888888877766666666666655 888889999888888877554 46778888999999999999999
Q ss_pred HHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHH
Q 001357 470 SFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYR 549 (1093)
Q Consensus 470 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 549 (1093)
.|+.|.. ..|....+|-.+..+|...|.+.+|...-+
T Consensus 356 aFR~Aq~-------------------------------------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An 392 (564)
T KOG1174|consen 356 AFRTAQM-------------------------------------------LAPYRLEIYRGLFHSYLAQKRFKEANALAN 392 (564)
T ss_pred HHHHHHh-------------------------------------------cchhhHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 9998887 456788889999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCC
Q 001357 550 LILFKYQDYVDAYLRLA-AIAK-ARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKD 627 (1093)
Q Consensus 550 ~~l~~~p~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d 627 (1093)
.++...|.++.++..+| .++. .-.--++|..++++++.+.|....+-..++.++...|.+..++..+++.+...+ |
T Consensus 393 ~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D 470 (564)
T KOG1174|consen 393 WTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--D 470 (564)
T ss_pred HHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--c
Confidence 99999999988888886 4443 333457799999999999999999999999999999999999999999988776 5
Q ss_pred hHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 001357 628 SYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK 688 (1093)
Q Consensus 628 ~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~ 688 (1093)
...+..||++ +... +.+.+|+..|..+|.++|++..+.-++-.+-.+.
T Consensus 471 ~~LH~~Lgd~-~~A~------------Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 471 VNLHNHLGDI-MRAQ------------NEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD 518 (564)
T ss_pred cHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence 6667779999 8888 8999999999999999999988877765554433
No 55
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=5.3e-15 Score=154.81 Aligned_cols=466 Identities=13% Similarity=0.163 Sum_probs=351.2
Q ss_pred HHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001357 91 VYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1093)
Q Consensus 91 ~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1093)
..+.+.|.++.+ ++.+..|..+|++|+..+..+...|+..+.+-+.......|..++++++..-|.--..|+....
T Consensus 74 ~~WikYaqwEes----q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 74 QVWIKYAQWEES----QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHh----HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 345566666633 6778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhH
Q 001357 171 VEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGI 250 (1093)
Q Consensus 171 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~ 250 (1093)
+--.+|+...|.++|++-+...|+. .+|......-.+.+..+.|+.+|++.+-..| .+..|...+..-...|+ .
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~e--qaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~---~ 223 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDE--QAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGN---V 223 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCc---H
Confidence 9999999999999999999999986 5677778888888999999999999998887 67889999999999998 8
Q ss_pred HHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHH-HHHHHHHHHhcCC---HHH
Q 001357 251 RKGMEKMQRAFEIYPYC---AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS-YYNLARSYHSKGD---YEK 323 (1093)
Q Consensus 251 ~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~la~~~~~~g~---~~~ 323 (1093)
.-+...|.+++....++ ...+...|..-..+..++.|.-+|.-++...+.+ .+.- +-.....--+-|+ .++
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~--raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG--RAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHHhcchhhhHH
Confidence 88999999998876543 3345555666677888999999999998655322 2222 2222222223343 333
Q ss_pred HHH-----HHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHH---HH
Q 001357 324 AGL-----YYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCE-------TLKALGHIY---VQ 388 (1093)
Q Consensus 324 A~~-----~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~---~~ 388 (1093)
++. .|+..+. .+|.+..+|+.+..+....|+.+.-.+.|++++..-|...+ ++.-+-.++ ..
T Consensus 302 ~Iv~KRk~qYE~~v~---~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVS---KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHhhhhhhHHHHHHH---hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2444444 66777788888888888888888888888888877665322 111111111 23
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 001357 389 LGQIEKAQELLRKAAKIDPRD----AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (1093)
Q Consensus 389 ~g~~~~A~~~l~~~l~~~p~~----~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~ 463 (1093)
..+.+.+..+|+.++.+-|.. +.+|+..+... .+.+...|...+..++...|. ..+.-....+-.++++
T Consensus 379 ~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK------~KlFk~YIelElqL~e 452 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK------DKLFKGYIELELQLRE 452 (677)
T ss_pred hhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc------hhHHHHHHHHHHHHhh
Confidence 467888888888888887754 55666666666 777888888888888777665 4555556666777888
Q ss_pred HHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHH
Q 001357 464 FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVA 543 (1093)
Q Consensus 464 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 543 (1093)
++....+|++.+. ..|.+..+|...|.+-..+|+.+.
T Consensus 453 fDRcRkLYEkfle-------------------------------------------~~Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915|consen 453 FDRCRKLYEKFLE-------------------------------------------FSPENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHHHHHHHHHHHh-------------------------------------------cChHhhHHHHHHHHHHHHhhhHHH
Confidence 8888888888877 668889999999999999999999
Q ss_pred HHHHHHHHHHhcCChHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhh-----ccc---------
Q 001357 544 ASVLYRLILFKYQDYVD--AYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL-----KND--------- 607 (1093)
Q Consensus 544 A~~~~~~~l~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-----~~g--------- 607 (1093)
|..+|+-++....-+.. .|-.....-...|.++.|..+|++.+...+... +|...+.+.. ..+
T Consensus 490 aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~ 568 (677)
T KOG1915|consen 490 ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEIT 568 (677)
T ss_pred HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcc
Confidence 99999988875433322 333344445577899999999999999887655 7777777655 333
Q ss_pred --chHHHHHHHHHhhh
Q 001357 608 --DWVKAKETFRAASD 621 (1093)
Q Consensus 608 --~~~~A~~~~~~~l~ 621 (1093)
....|...|+.+..
T Consensus 569 ~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 569 DENIKRARKIFERANT 584 (677)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 45566666666544
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.83 E-value=1.4e-14 Score=157.14 Aligned_cols=667 Identities=13% Similarity=0.101 Sum_probs=435.4
Q ss_pred hcCCChHHHHHHHHHHHHcCCH-HHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhh-hhhhHhHHHHHH
Q 001357 35 AEQAPLDLWLIIAREYFKQGKV-EQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIE-TKQREKEEHFIL 112 (1093)
Q Consensus 35 ~e~~~~~~~~~la~~y~~~g~~-~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~-~~~~~r~~~~~~ 112 (1093)
..+-++..|..-.. +++|.. .+-..++++++..-| .+ +.+..-|++.-... ...-..+..|..
T Consensus 22 Rnp~svk~W~RYIe--~k~~sp~k~~~~lYERal~~lp-----~s--------ykiW~~YL~~R~~~vk~~~~T~~~~~~ 86 (835)
T KOG2047|consen 22 RNPFSVKCWLRYIE--HKAGSPDKQRNLLYERALKELP-----GS--------YKIWYDYLKARRAQVKHLCPTDPAYES 86 (835)
T ss_pred cCchhHHHHHHHHH--HHccCChHHHHHHHHHHHHHCC-----Cc--------hHHHHHHHHHHHHHhhccCCCChHHHH
Confidence 35667788887543 333433 445557788875522 22 22333333221111 011112456777
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001357 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1093)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1093)
--.+|++++..-..-|.+|......+..+|+...-...|.++|..-|- +...|-.........+-..-++..|++.|+
T Consensus 87 vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk 166 (835)
T KOG2047|consen 87 VNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK 166 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 788888888766677899999999999999999999999999988774 344555555556677888899999999999
Q ss_pred hCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 001357 191 VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-------DPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1093)
Q Consensus 191 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~ 263 (1093)
..|... -.....+...++.++|.+.+...+.. .+.+...|..+..+..+.-+...--.--..++..+..
T Consensus 167 ~~P~~~----eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r 242 (835)
T KOG2047|consen 167 VAPEAR----EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR 242 (835)
T ss_pred cCHHHH----HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc
Confidence 999873 33456778899999999999988764 3445667777777766654422112223345566666
Q ss_pred CCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH--HHHhcCCCCC
Q 001357 264 YPYC-AMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA--SVKEINKPHE 340 (1093)
Q Consensus 264 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--al~~~~~~~~ 340 (1093)
.++. ...|..||..|.+.|.++.|..+++.++...-...+...++-..+ .|++-.-.+.- +.....+..+
T Consensus 243 ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya-------~FEE~~~~~~me~a~~~~~n~ed 315 (835)
T KOG2047|consen 243 FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYA-------QFEESCVAAKMELADEESGNEED 315 (835)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHH-------HHHHHHHHHHHhhhhhcccChhh
Confidence 6653 467888999999999999999999998865432222222221111 11111111100 1111111112
Q ss_pred chhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-----CHHHHH
Q 001357 341 FIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK-IDPR-----DAQAFI 414 (1093)
Q Consensus 341 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-~~p~-----~~~~~~ 414 (1093)
....-..++..-........- .=.-++..+|+++..|+....++ .|+..+-+..|..++. .+|. ....|.
T Consensus 316 ~~dl~~~~a~~e~lm~rr~~~--lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~ 391 (835)
T KOG2047|consen 316 DVDLELHMARFESLMNRRPLL--LNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWV 391 (835)
T ss_pred hhhHHHHHHHHHHHHhccchH--HHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHH
Confidence 222222222222111111111 11224566888888888776554 6788899999999886 3443 357899
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhh
Q 001357 415 DLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 493 (1093)
Q Consensus 415 ~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 493 (1093)
.++.+| ..|+.+.|...|+++...--. ....-..+|.+.|..-....+++.|+.+.+.|...+....
T Consensus 392 ~faklYe~~~~l~~aRvifeka~~V~y~-~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~----------- 459 (835)
T KOG2047|consen 392 EFAKLYENNGDLDDARVIFEKATKVPYK-TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE----------- 459 (835)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCCcc-chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----------
Confidence 999999 999999999999998765211 1111267888889999999999999999999987543211
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC
Q 001357 494 DASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN 573 (1093)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 573 (1093)
+.+|+.... ....--....+|..++......|-++....+|.+++.+.--.+....+.|..+....
T Consensus 460 -----------~~~yd~~~p---vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~ 525 (835)
T KOG2047|consen 460 -----------LEYYDNSEP---VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHK 525 (835)
T ss_pred -----------hhhhcCCCc---HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhH
Confidence 000100000 000001255688888999999999999999999999988888888889999988888
Q ss_pred CHHHHHHHHHHHHHHc--CCChhHHHHhhhhh---hcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhccc
Q 001357 574 NLQLSIELVNEALKVN--GKYPNALSMLGDLE---LKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKR 648 (1093)
Q Consensus 574 ~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~ 648 (1093)
-++++.+.|++.+.+. |.-.++|..+-.-. +...+.+.|..+|+++++..|....-.++ |. |...
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiy-Ll---YA~l------ 595 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIY-LL---YAKL------ 595 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHH-HH---HHHH------
Confidence 9999999999999887 45555665443332 23346899999999999988753333222 21 3333
Q ss_pred CchHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH-hcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH
Q 001357 649 APKLEATHLEKAKELYTRVIVQHTS-NLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA 726 (1093)
Q Consensus 649 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~ 726 (1093)
+.+-|-...|+.+|+++-..-+. +...++++-+.-+ ..=-...-..+|+++++..|++ ......+..+..-..
T Consensus 596 --EEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~---~~r~mclrFAdlEtk 670 (835)
T KOG2047|consen 596 --EEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDS---KAREMCLRFADLETK 670 (835)
T ss_pred --HHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChH---HHHHHHHHHHHHhhh
Confidence 11128889999999998664433 3333333322111 1123456678999999998854 344566677888899
Q ss_pred hcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHH
Q 001357 727 QGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKS 772 (1093)
Q Consensus 727 ~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~ 772 (1093)
.|..+.|..+|.-+.+..+...++..|..--..-.+.|+-+.-++.
T Consensus 671 lGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 671 LGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred hhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 9999999999999998876666788888877777888884443333
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.80 E-value=1.6e-16 Score=181.42 Aligned_cols=305 Identities=14% Similarity=0.076 Sum_probs=237.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1093)
....|...+..|+++.|.+.+.++.+..|+....++..|.++...|+++.|..+|.++.+..|+....+....+.++...
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 46678889999999999999999999999888999999999999999999999999999999988445667779999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHHHcCChHH
Q 001357 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN----YLANHFFFTGQHFL 286 (1093)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~----~la~~~~~~g~~~~ 286 (1093)
|+++.|...++++++..|+++.++..++.++...|+ ++.|+..+....+..+.++..+. .....+...+..+.
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d---~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA---WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999 99999999999877544433321 11222233344444
Q ss_pred HHHHHHHHHhccC-CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 001357 287 VEQLTETALAVTN-HGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1093)
Q Consensus 287 A~~~~~~al~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1093)
+...+..+....+ ..+.++..+..++..+...|++++|...+.++++..++++..... .......+..++...++..+
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHH
Confidence 4445555554322 223567888889999999999999999999998843332221101 22333344567888899999
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHH
Q 001357 366 EKVLEIYPDNC--ETLKALGHIYVQLGQIEKAQELLR--KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLK 440 (1093)
Q Consensus 366 ~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~l~--~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~ 440 (1093)
+++++..|+++ ..+..+|.++++.|++++|..+|+ .++...|+... +..++.++ ..|+.++|..++++++...-
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999999998 888889999999999999999999 56677786655 55888888 88999999988888776543
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=3.7e-19 Score=193.27 Aligned_cols=265 Identities=20% Similarity=0.263 Sum_probs=121.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHH
Q 001357 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1093)
Q Consensus 452 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 531 (1093)
..++.+++..|++++|+.++.+.+... .+|.+...|..+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~-----------------------------------------~~~~~~~~~~~~ 50 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI-----------------------------------------APPDDPEYWRLL 50 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-----------------------------------------cccccccccccc
Confidence 466999999999999999997665421 146788889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHH
Q 001357 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVK 611 (1093)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 611 (1093)
|.+....++++.|+..|++++..++..+..+..++.+ ...+++.+|+.++..+++..+ ++..+..+..++...+++++
T Consensus 51 a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~ 128 (280)
T PF13429_consen 51 ADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDE 128 (280)
T ss_dssp ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHH
Confidence 9999999999999999999999999988889898888 789999999999999888764 56777788888999999999
Q ss_pred HHHHHHHhhhcCC-CCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 001357 612 AKETFRAASDATD-GKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQ 690 (1093)
Q Consensus 612 A~~~~~~~l~~~~-~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~ 690 (1093)
+...+..+....+ ..+...+..+|.+ |... |+.++|+.+|+++++.+|+|..+...++++++..|+
T Consensus 129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~-~~~~------------G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 129 AEELLEKLEELPAAPDSARFWLALAEI-YEQL------------GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp HHHHHHHHHH-T---T-HHHHHHHHHH-HHHC------------CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHH-HHHc------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 9999999776442 3467788888988 8888 999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHH
Q 001357 691 FDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCK 770 (1093)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~ 770 (1093)
.+++..++.......| .++..+..+|.+|...|++++|+.+|++++.. .+.|+.++..+|.++...|+.++|.
T Consensus 196 ~~~~~~~l~~~~~~~~-----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 196 YDEAREALKRLLKAAP-----DDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHHHHHHHHHH-H-----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred hHHHHHHHHHHHHHCc-----CHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 9999999999988876 67889999999999999999999999999998 7888999999999999999999999
Q ss_pred HHHHHHHHh
Q 001357 771 KSLLRAIHL 779 (1093)
Q Consensus 771 ~~~~~al~~ 779 (1093)
.++++++..
T Consensus 269 ~~~~~~~~~ 277 (280)
T PF13429_consen 269 RLRRQALRL 277 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 999988753
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=6.1e-18 Score=168.48 Aligned_cols=275 Identities=17% Similarity=0.185 Sum_probs=245.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 001357 136 QLLLAKGEVEQASSAFKIVLEAD---RD-------NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1093)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1093)
.+++...+...|-..+...+... |. +...-..+|.||++.|-+.+|.+.++..+...|.. +.+..++.
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~--dTfllLsk 264 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP--DTFLLLSK 264 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch--hHHHHHHH
Confidence 34566677777777776665442 21 22334679999999999999999999999998875 67888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 001357 206 CRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1093)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1093)
+|.+..+...|+..|...+...|.++..+...+.++...++ +++|+++|+.+++.+|.+.++...++..|+..++.+
T Consensus 265 vY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~---~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 265 VYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ---QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh---HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChH
Confidence 99999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 001357 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1093)
Q Consensus 286 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1093)
-|+.++.++++..- ..++.+.++|.|++..++++-++..|.+++.....+.....+|+++|.+....|++.-|..+|
T Consensus 342 ~AlryYRRiLqmG~---~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcf 418 (478)
T KOG1129|consen 342 MALRYYRRILQMGA---QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCF 418 (478)
T ss_pred HHHHHHHHHHHhcC---CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHH
Confidence 99999999998764 445899999999999999999999999999876666777889999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001357 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1093)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~ 418 (1093)
+-++..+|++.+++++||.+-.+.|+.+.|..++..+....|...+..++++.
T Consensus 419 rlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 419 RLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred HHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeE
Confidence 99999999999999999999999999999999999999999988777766654
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=2.6e-15 Score=151.39 Aligned_cols=375 Identities=13% Similarity=0.095 Sum_probs=197.5
Q ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHH
Q 001357 175 RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (1093)
Q Consensus 175 ~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al 254 (1093)
..+|..|+.+++-.+..+......+...+|.|++++|+|++|+..|+-+...+.-+...++.|+.+++-.|. |.+|.
T Consensus 35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~---Y~eA~ 111 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ---YIEAK 111 (557)
T ss_pred cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---HHHHH
Confidence 344555555544444333322223444455555555555555555555554444444555555555555554 44444
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 001357 255 EKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE 334 (1093)
Q Consensus 255 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 334 (1093)
....+ .|.++.....+..+..+.++-.+-..+....-. ..+-...++.+.+..-.|.+|+.+|.+++.
T Consensus 112 ~~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~- 179 (557)
T KOG3785|consen 112 SIAEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ- 179 (557)
T ss_pred HHHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 33322 244444433343444444444433333332221 124455666666666777888888888776
Q ss_pred cCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHH
Q 001357 335 INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI-DPRDAQAF 413 (1093)
Q Consensus 335 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~p~~~~~~ 413 (1093)
.+|.....-..++.||+++.-|+-+.+++.-.+...|+.+.+.+..+...++.=+-..|..-...+... +...+.+-
T Consensus 180 --dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 180 --DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred --cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 666666666777888888888888888888888888887777777777776654333344333333321 12222222
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhh
Q 001357 414 IDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYV 492 (1093)
Q Consensus 414 ~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 492 (1093)
..+-.-+ .-.+-+.|+..+-..+.. -+++..++...|.++++..+|..+.+.
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~--------IPEARlNL~iYyL~q~dVqeA~~L~Kd------------------- 310 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH--------IPEARLNLIIYYLNQNDVQEAISLCKD------------------- 310 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh--------ChHhhhhheeeecccccHHHHHHHHhh-------------------
Confidence 2111111 222334555554444433 245666777777777777777766543
Q ss_pred hhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHH---HHhc------CChHHHHH
Q 001357 493 IDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI---LFKY------QDYVDAYL 563 (1093)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---l~~~------p~~~~~~~ 563 (1093)
..|..+.-+...|.++...|+--...+.++-+ +..- -+.+....
T Consensus 311 ---------------------------l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 311 ---------------------------LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred ---------------------------cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 33445555555566665555433332222211 1110 11122334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhh
Q 001357 564 RLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAAS 620 (1093)
Q Consensus 564 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 620 (1093)
.++..++-..++++.+.+++..-...-++....++++.+++..|++.+|.+.|-++.
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 444444455556666666666555555556666666666666666666666665543
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=2.3e-15 Score=151.72 Aligned_cols=450 Identities=15% Similarity=0.113 Sum_probs=293.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENV-EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHF 285 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 285 (1093)
+....++..|+..++-.+..+.... .....+|.+++..|+ |++|+..|.-+...+..+...+..||.+++..|.|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgd---Y~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGD---YEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhcc---HHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 4456788888888887776554433 456678889999998 999999999888877777888999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHH
Q 001357 286 LVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF 365 (1093)
Q Consensus 286 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 365 (1093)
+|..+..++-+ .| .....+-...++.++-.+-+.+.....+ ...-.+.++.+.+..-.|.+||.+|
T Consensus 109 eA~~~~~ka~k----~p---L~~RLlfhlahklndEk~~~~fh~~LqD-------~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 109 EAKSIAEKAPK----TP---LCIRLLFHLAHKLNDEKRILTFHSSLQD-------TLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHhhCCC----Ch---HHHHHHHHHHHHhCcHHHHHHHHHHHhh-------hHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99888776532 23 3333444445566665555444433322 2244677888888888999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h--cCCHHHHHHHHHHHHHHHHhc
Q 001357 366 EKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I--SSDTGAALDAFKTARTLLKKA 442 (1093)
Q Consensus 366 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~--~~~~~~A~~~~~~a~~~~~~~ 442 (1093)
.+++..+|+.......++.||+++.-++-+.+++.-.+...|+.+.+....+... + .|+..++ -... +..+.
T Consensus 175 krvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~--E~k~---ladN~ 249 (557)
T KOG3785|consen 175 KRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAED--EKKE---LADNI 249 (557)
T ss_pred HHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHH--HHHH---HHhcc
Confidence 9999988888888889999999999999999999999999999888877766644 2 3333221 1111 11111
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCC
Q 001357 443 GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPW 522 (1093)
Q Consensus 443 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 522 (1093)
... |+.+..+++.-+-
T Consensus 250 ~~~------------------~~f~~~l~rHNLV---------------------------------------------- 265 (557)
T KOG3785|consen 250 DQE------------------YPFIEYLCRHNLV---------------------------------------------- 265 (557)
T ss_pred ccc------------------chhHHHHHHcCeE----------------------------------------------
Confidence 100 1111111100000
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhh
Q 001357 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (1093)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 602 (1093)
--.+-+.|++++-.++..- +++..+|+..|..+++..+|+.+++. ++|..|.-+...|.+
T Consensus 266 --------------vFrngEgALqVLP~L~~~I---PEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv 325 (557)
T KOG3785|consen 266 --------------VFRNGEGALQVLPSLMKHI---PEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVV 325 (557)
T ss_pred --------------EEeCCccHHHhchHHHhhC---hHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHH
Confidence 0011223333333333222 23444444445555555555444433 445555555555555
Q ss_pred hhcccch-------HHHHHHHHHhhhcCCC-CChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCC
Q 001357 603 ELKNDDW-------VKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSN 674 (1093)
Q Consensus 603 ~~~~g~~-------~~A~~~~~~~l~~~~~-~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 674 (1093)
+...|+- .-|...|.-+-..... ......-+++.. ++.. .+++..+-++...-....+|
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~-fFL~------------~qFddVl~YlnSi~sYF~Nd 392 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY-FFLS------------FQFDDVLTYLNSIESYFTND 392 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-HHHH------------HHHHHHHHHHHHHHHHhcCc
Confidence 4444432 2222222221111111 122233456666 7777 88999999888888888888
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-HHHH
Q 001357 675 LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQIL 753 (1093)
Q Consensus 675 ~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l 753 (1093)
....++++++++..|++.+|.++|-++..-.- .+.......|+.||...|....|..+|- +.. .+.+ ...+
T Consensus 393 D~Fn~N~AQAk~atgny~eaEelf~~is~~~i----kn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~-t~~e~fsLL 464 (557)
T KOG3785|consen 393 DDFNLNLAQAKLATGNYVEAEELFIRISGPEI----KNKILYKSMLARCYIRNKKPQLAWDMML---KTN-TPSERFSLL 464 (557)
T ss_pred chhhhHHHHHHHHhcChHHHHHHHhhhcChhh----hhhHHHHHHHHHHHHhcCCchHHHHHHH---hcC-CchhHHHHH
Confidence 88889999999999999999999988754321 1333445578999999999999999863 331 2223 5667
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001357 754 LYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1093)
Q Consensus 754 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 783 (1093)
..++..+++.+.+--|.+.|..+-.++|+.
T Consensus 465 qlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 465 QLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 788999999999999999999999999853
No 62
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=5.7e-19 Score=191.80 Aligned_cols=262 Identities=24% Similarity=0.307 Sum_probs=100.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001357 167 GQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1093)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1093)
.+|.+++..|++++|+.++.+.+... |++ ..+|..+|.+...+++++.|+.+|++++..++.++..+..++.+ ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~-~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDD-PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 44666666666666666665444333 333 55566666666666666666666666666666666666566555 444
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHH
Q 001357 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324 (1093)
Q Consensus 245 ~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 324 (1093)
++ +.+|+.++.++++..+ ++..+..++.++...++++++..++..+.... ..+.++..|..+|.++...|++++|
T Consensus 91 ~~---~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GD---PEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELP-AAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cc---cccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 54 6666666666665443 34455555666666677777777766655422 2345567777788888888888888
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 325 GLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1093)
Q Consensus 325 ~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 404 (1093)
+..|++++. ..|++..+...++.+++..|+++++...+....+..|.++..+..+|.+|...|++++|+.+|++++.
T Consensus 166 ~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 166 LRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 888888887 45666677777888888888888877777777777777777778888888888888888888888888
Q ss_pred hCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Q 001357 405 IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTL 438 (1093)
Q Consensus 405 ~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~ 438 (1093)
.+|+++.++..++.++ ..|+.++|..++.++...
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 8888888888888888 888888888777776554
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=1e-16 Score=190.13 Aligned_cols=263 Identities=12% Similarity=-0.010 Sum_probs=177.3
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCChHH
Q 001357 131 WVGKGQLLLAK---GEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCPGA 198 (1093)
Q Consensus 131 ~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~al~~~p~~~~~ 198 (1093)
++.+|..++.. +.+++|+.+|++++..+|+++.++..+|.++... +++.+|+..+++++.++|++ +.
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~-~~ 339 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN-PQ 339 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC-HH
Confidence 34445444333 3456777777777777777777777777665533 23677777777777777777 56
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001357 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1093)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1093)
++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+ +++|+..+++++.++|.++.....++.++
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~---~~eAi~~~~~Al~l~P~~~~~~~~~~~~~ 416 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ---LEEALQTINECLKLDPTRAAAGITKLWIT 416 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 677777777777777777777777777777777777777777777777 77777777777777777766655566666
Q ss_pred HHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCH
Q 001357 279 FFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF 358 (1093)
Q Consensus 279 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~ 358 (1093)
+..|++++|+..+.+++... .|..+..+..+|.++...|++++|...+.++.. ..|....+...++..|...|+
T Consensus 417 ~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~- 490 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNSE- 490 (553)
T ss_pred HhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccHH-
Confidence 66777777777777766432 244556777778888888888888888777654 455566666777777777773
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 359 RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 359 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 405 (1093)
.|...++.+++..-....-...+..+|.-.|+.+.+..+ +++.+.
T Consensus 491 -~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 491 -RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred -HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 666666666654322222233366677777777777666 655543
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=3.6e-18 Score=170.06 Aligned_cols=246 Identities=18% Similarity=0.164 Sum_probs=231.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
..+|.||++.|.+.+|.+.|+..+...| .+..++.++.+|.+..+...|+.+|...+...|.+ ...+.+++.++..++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~-VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD-VTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch-hhhhhhhHHHHHHHH
Confidence 4589999999999999999999998875 68889999999999999999999999999999999 777899999999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1093)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1093)
++++|.++|+.+++.+|.|+++...+|.-|+..++ .+-|+.+|++++.+.-.++..+..+|.+++..++++-++..|
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~---PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNN---PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCC---hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999999999999999999998988888 999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1093)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1093)
.+++.....+...+++|+++|.+....|++.-|...|+-++. .++++..++.+||.+-.+.|+.+.|..++..+-..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~---~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT---SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc---cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 999998877788899999999999999999999999999997 78899999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHH
Q 001357 372 YPDNCETLKALGHI 385 (1093)
Q Consensus 372 ~p~~~~~~~~la~~ 385 (1093)
.|.-.+..++++.+
T Consensus 459 ~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 459 MPDMAEVTTNLQFM 472 (478)
T ss_pred CccccccccceeEE
Confidence 99887777766544
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.77 E-value=1.6e-16 Score=188.30 Aligned_cols=269 Identities=15% Similarity=0.071 Sum_probs=215.0
Q ss_pred hCCCCHHH--HHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC---------CHHHHHHHHHH
Q 001357 157 ADRDNVPA--LLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---------QLGKARQAFQR 222 (1093)
Q Consensus 157 ~~p~~~~a--~~~la~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~ 222 (1093)
..|.+..+ ++..|..++.. +.+.+|+.+|++++..+|++ ..++..+|.|+..++ ++.+|+..+++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 44555443 34444433332 45789999999999999999 677888998877443 47899999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCC
Q 001357 223 ALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGP 302 (1093)
Q Consensus 223 al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 302 (1093)
+++++|+++.++..+|.++...|+ +++|+..|++++.++|+++.+++.+|.++...|++++|+..+++++... |
T Consensus 330 Al~ldP~~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P 403 (553)
T PRK12370 330 ATELDHNNPQALGLLGLINTIHSE---YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD---P 403 (553)
T ss_pred HHhcCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---C
Confidence 999999999999999999999998 9999999999999999999999999999999999999999999999776 4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001357 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKAL 382 (1093)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 382 (1093)
..+..++.++.+++..|++++|+..+.+++.. .+|....++..+|.++...|++++|+..+.++....|....++..+
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 44455666677788899999999999998863 2466777889999999999999999999999988888888899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 001357 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTART 437 (1093)
Q Consensus 383 a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~ 437 (1093)
+.+|...|+ .|...++++++..-....-...+..++ ..|+.+.+..+ +++.+
T Consensus 482 ~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 482 YAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 999988884 788877777664322222222256666 66777666655 55443
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.76 E-value=2.5e-12 Score=140.00 Aligned_cols=596 Identities=11% Similarity=0.118 Sum_probs=385.4
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHH--c------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLA--K------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~--~------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1093)
+-..+|+++++.-|.+...|+..-..-.. . .-|..--.+|++++-.--.-+..|+.....+..+|+...-..
T Consensus 44 ~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~ 123 (835)
T KOG2047|consen 44 QRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRR 123 (835)
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHH
Confidence 45677888888888888777654322111 1 125556667777776555667778888888888888888888
Q ss_pred HHHHHHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001357 184 FYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1093)
Q Consensus 184 ~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1093)
.|.++|..-|-. ...+|-.........|-++-++..|.+.|+.+|...+-++ ..+...++ ..+|-+.+...+.
T Consensus 124 tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyi---e~L~~~d~---~~eaa~~la~vln 197 (835)
T KOG2047|consen 124 TFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYI---EYLAKSDR---LDEAAQRLATVLN 197 (835)
T ss_pred HHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHH---HHHHhccc---hHHHHHHHHHhcC
Confidence 888888776643 1233333444455667777888888888888876644332 23333444 6677777766654
Q ss_pred hC-------CCcHHHHHHHHHHHHHcCChHH---HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001357 263 IY-------PYCAMALNYLANHFFFTGQHFL---VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1093)
Q Consensus 263 ~~-------p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1093)
.+ +.+-..|..+..+..+.-+.-. +..++...+... .......|..||..|.+.|.++.|..+|++++
T Consensus 198 ~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf--tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 198 QDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF--TDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred chhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC--cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33 4555666666666666555443 333344333322 12234567778888888888888888888887
Q ss_pred HhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH--h--CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--I--YPD-NCETLKALGHIYVQLGQIEKAQELLRKAAKIDP 407 (1093)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~--~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p 407 (1093)
...-...++..++-..+. |++....+.--+. . ++. ...+-..++..-.-.++...-+ -.-++..+|
T Consensus 276 ~~v~tvrDFt~ifd~Ya~-------FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l--NsVlLRQn~ 346 (835)
T KOG2047|consen 276 QTVMTVRDFTQIFDAYAQ-------FEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL--NSVLLRQNP 346 (835)
T ss_pred HhheehhhHHHHHHHHHH-------HHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH--HHHHHhcCC
Confidence 754433444333322221 1111111100000 0 111 1122222222222222111111 112356689
Q ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhccc
Q 001357 408 RDAQAFIDLGELLISSDTGAALDAFKTARTLL-KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDS 486 (1093)
Q Consensus 408 ~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 486 (1093)
++...|.....++ .|+..+-+..|..++... |......+..++..+|.+|...|+.+.|...|+++....-
T Consensus 347 ~nV~eW~kRV~l~-e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y------- 418 (835)
T KOG2047|consen 347 HNVEEWHKRVKLY-EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY------- 418 (835)
T ss_pred ccHHHHHhhhhhh-cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc-------
Confidence 9999888777766 567778888888887654 3323333468899999999999999999999999988421
Q ss_pred ccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC----------
Q 001357 487 KTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ---------- 556 (1093)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---------- 556 (1093)
..-.+...+|..-|..-....+++.|..+.+.+...-.
T Consensus 419 --------------------------------~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 419 --------------------------------KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred --------------------------------cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 01123577889999998899999999999998875211
Q ss_pred --------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCCh
Q 001357 557 --------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDS 628 (1093)
Q Consensus 557 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~ 628 (1093)
.....|..++......|-++.....|++++.+---.|....++|.++....-++++.+.|++.+.+.+-+..
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 123466777777788899999999999999999889999999999999999999999999999998877666
Q ss_pred HHHHHhHhHHHHHHH--hhcccCchHHHHHHHHHHHHHHHHHhhCCC-CH-HHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 001357 629 YATLSLGNWNYFAAL--RNEKRAPKLEATHLEKAKELYTRVIVQHTS-NL-YAANGAGVVLAEKGQFDVSKDLFTQVQEA 704 (1093)
Q Consensus 629 ~~~~~l~~~~y~~~~--~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~-~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 704 (1093)
+-. .+. |+... +... ...+.|..+|+++|...|. .. ..+...+.+--+.|....|+.+|+++-..
T Consensus 547 ~di---W~t-YLtkfi~rygg-------~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 547 YDI---WNT-YLTKFIKRYGG-------TKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHH---HHH-HHHHHHHHhcC-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 532 222 32221 1111 5689999999999998874 22 23344455555679999999999998765
Q ss_pred hcCCCCCCchhHHHHHHHHHHHhc----CHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 001357 705 ASGSVFVQMPDVWINLAHVYFAQG----NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (1093)
Q Consensus 705 ~p~~~~~~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~ 780 (1093)
.+ +.-.+.+-.+|...- -...-..+|++|++..|+..-.......+..-.+.|..+.|..+|...-++.
T Consensus 616 v~-------~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 616 VK-------EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred CC-------HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 43 223333333333310 1334567899999986555556667778888889999999999998888876
Q ss_pred CC
Q 001357 781 PS 782 (1093)
Q Consensus 781 P~ 782 (1093)
|-
T Consensus 689 dP 690 (835)
T KOG2047|consen 689 DP 690 (835)
T ss_pred CC
Confidence 53
No 67
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=4.4e-15 Score=169.72 Aligned_cols=290 Identities=13% Similarity=0.094 Sum_probs=238.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV-PALLGQACVEFNRGRYSDSLEFY 185 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~~~~~g~~~~Al~~~ 185 (1093)
+|+|..|.+.+.++.+..|.....++..|.++...|+++.|..+|.++.+..|++. .+....+.++...|+++.|+..+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45566999999999999998888889999999999999999999999999999885 56777899999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH----HHHHHHHhhhHHhHHHHHHHHHHHH
Q 001357 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA----LAVMDLQANEAAGIRKGMEKMQRAF 261 (1093)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~----la~~~~~~~~~~~~~~Al~~~~~al 261 (1093)
+.+++..|++ +.++..++.++...|+++.|...+.+.++..+.+...+.. ...-....+. ..++...+..+.
T Consensus 177 ~~l~~~~P~~-~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~---~~~~~~~L~~~~ 252 (409)
T TIGR00540 177 DKLLEMAPRH-KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM---ADEGIDGLLNWW 252 (409)
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHH
Confidence 9999999999 6788999999999999999999999999875544443321 1111122222 455566777777
Q ss_pred HhCC----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 001357 262 EIYP----YCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1093)
Q Consensus 262 ~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1093)
...| +++.++..++..+...|+++.|...++.+++..+.++.... ...........++...++..++++++ .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk---~ 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAK---N 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHH---h
Confidence 7777 58999999999999999999999999999986644332111 13333344556889999999999998 5
Q ss_pred CCCch--hhHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 338 PHEFI--FPYYGLGQVQLKLGDFRSALTNFE--KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 338 ~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 405 (1093)
.|+.+ .....+|.+++..|++++|..+|+ .+++..|+... +..+|.++...|+.++|..+|++++..
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56666 778899999999999999999999 57778886655 569999999999999999999998754
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.4e-14 Score=153.64 Aligned_cols=457 Identities=14% Similarity=0.075 Sum_probs=294.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1093)
.++.|++|++..++++...|+++.++.....++.+.++|++|+.+.+.-....-.+ ...+..|.|.|+.+..++|+..+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~ 102 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTL 102 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHH
Confidence 36778899999999999999999999999999999999999996555433222222 22389999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC
Q 001357 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1093)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1093)
. ..++.+ ..+....|..++++|+|++|..+|+.+++.+.++.+.......+..... . ..+ +.+.+...|
T Consensus 103 ~---~~~~~~-~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-----l-~~~-~~q~v~~v~ 171 (652)
T KOG2376|consen 103 K---GLDRLD-DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-----L-QVQ-LLQSVPEVP 171 (652)
T ss_pred h---cccccc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-----h-hHH-HHHhccCCC
Confidence 8 334444 4567889999999999999999999999888777666554443322211 0 111 334444455
Q ss_pred C-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----CCCCC-------chHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001357 266 Y-CAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPT-------KSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1093)
Q Consensus 266 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1093)
. +...+++.+.++...|+|.+|++++..++... ..+.. ...+...++.++..+|+..+|...|...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4 56788999999999999999999999995321 11111 12356678899999999999999999999
Q ss_pred HhcCCCC-CchhhHHHHHHHHHHcCCHH-HHHHHHHHHHHhCC----------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 333 KEINKPH-EFIFPYYGLGQVQLKLGDFR-SALTNFEKVLEIYP----------DNCETLKALGHIYVQLGQIEKAQELLR 400 (1093)
Q Consensus 333 ~~~~~~~-~~~~~~~~la~~~~~~g~~~-~A~~~~~~~l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1093)
...+.+. ....+..++..+-....-++ .++..++......+ .-..++.+.+.+.+..+.-+.+.+...
T Consensus 252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a 331 (652)
T KOG2376|consen 252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA 331 (652)
T ss_pred HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 8543222 22222333322211111111 12222222221111 122455666677777777777766665
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcch
Q 001357 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGI 479 (1093)
Q Consensus 401 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 479 (1093)
..-...|....-........ ....+..+..++.......|. ....+...++.+.+..|++..|+..+...+. .
T Consensus 332 ~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~----~s~~v~L~~aQl~is~gn~~~A~~il~~~~~--~ 405 (652)
T KOG2376|consen 332 SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPE----KSKVVLLLRAQLKISQGNPEVALEILSLFLE--S 405 (652)
T ss_pred hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--h
Confidence 55445555433333333333 333566666666554443222 2367888899999999999999999985542 1
Q ss_pred hhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc----
Q 001357 480 WLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKY---- 555 (1093)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---- 555 (1093)
|...+. .....+.+...+..++...++...|..++..++...
T Consensus 406 ~~ss~~----------------------------------~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 406 WKSSIL----------------------------------EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred hhhhhh----------------------------------hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 111000 011233344445555667777777777777766522
Q ss_pred ---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHH
Q 001357 556 ---QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKET 615 (1093)
Q Consensus 556 ---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 615 (1093)
+.....+..++..-.+.|+-++|...+++.++.+|++..++..+...|... +.+.|..+
T Consensus 452 t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 452 TGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred ccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 222344555666666778888888888888888888888887777665543 34444433
No 69
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=3.1e-15 Score=169.92 Aligned_cols=296 Identities=13% Similarity=0.057 Sum_probs=216.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1093)
.+..|...+..|+|+.|.+.+.+.....+.-...++..+.+....|+++.|..+|.++.+..|+.........+.++...
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 45678888889999999988887655433323344444666699999999999999999999988445555668999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHH--------HHHHHHHcC
Q 001357 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNY--------LANHFFFTG 282 (1093)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~--------la~~~~~~g 282 (1093)
|+++.|...++++++.+|+++.++..++.++...|+ +++|+..+....+..+.++..... +........
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd---w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA---WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998 999999998888876654443221 111111122
Q ss_pred ChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHH
Q 001357 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSAL 362 (1093)
Q Consensus 283 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 362 (1093)
+.+....+.... ....+.++.+...++..+...|+.++|...+.++++ ..+ ....... ...+..+++++++
T Consensus 244 ~~~~l~~~w~~l---p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~-~~~l~~l--~~~l~~~~~~~al 314 (398)
T PRK10747 244 GSEGLKRWWKNQ---SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQY-DERLVLL--IPRLKTNNPEQLE 314 (398)
T ss_pred CHHHHHHHHHhC---CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCC-CHHHHHH--HhhccCCChHHHH
Confidence 222222222222 122355677888888888888888888888888876 222 2222222 2223458888888
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001357 363 TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1093)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 439 (1093)
..+++.++.+|+++..+..+|.++...+++++|..+|++++...|++. .+..++.++ ..|+.++|..+|++++.+.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888888888888888888888888888888888888888888888654 455778888 8888888888888776653
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=2.1e-16 Score=170.88 Aligned_cols=265 Identities=16% Similarity=0.199 Sum_probs=185.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
+..|..+++.|++.+|.-+|+.++..+|.+.++|..||.+....++ -..||..++++++++|++..++..||..|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~---E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN---EQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc---hHHHHHHHHHHHhcCCccHHHHHHHHHHHhh
Confidence 4466667777777777777777777777777777777777666665 5666777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhccCCCCCch----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC
Q 001357 281 TGQHFLVEQLTETALAVTNHGPTKS----HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1093)
.|.-..|..++..-+.......... .-.+...........+..-.++|..+....+. ...+.++..||.+|...|
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhHHHHhcch
Confidence 7766667766666654321000000 00000000000111122334455555543321 255678999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001357 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTA 435 (1093)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a 435 (1093)
+|+.|+.||+.+|...|++...|+.||-.+....+..+|+..|.+++++.|..+.++++||..+ ..|.|.+|+.+|-.+
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhcCCCC-----CHHHHHHHHHHHHHcCCHHHHHH
Q 001357 436 RTLLKKAGEEV-----PIEVLNNIGVIHFEKGEFESAHQ 469 (1093)
Q Consensus 436 ~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~ 469 (1093)
+.+.+...... ...+|..|-.++...++.+.+..
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99887632211 13566666666666776664443
No 71
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=1e-14 Score=165.60 Aligned_cols=297 Identities=14% Similarity=0.110 Sum_probs=235.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHH
Q 001357 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA-LVALAVMDLQ 243 (1093)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~~~~~ 243 (1093)
.+..|.+.+..|+|+.|.+.+.+.....+. +...+...+......|+++.|...|.++.+.+|++..+ ....+.++..
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA 165 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 345666777799999999888776554333 24444555666699999999999999999999998644 4455899999
Q ss_pred hhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchH-----HHHHHHHHHHhc
Q 001357 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSH-----SYYNLARSYHSK 318 (1093)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~la~~~~~~ 318 (1093)
.|+ ++.|+..++++.+.+|+++.++..++.+|...|+++.|..++..+.+....++.... ++..+.......
T Consensus 166 ~g~---~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 166 RNE---NHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred CCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999 999999999999999999999999999999999999999999999876544332222 222222222222
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (1093)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1093)
.+-+....++..... ..+..+.+...++..+...|+.++|...++++++. |.++......+.+ ..+++++++..
T Consensus 243 ~~~~~l~~~w~~lp~---~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~ 316 (398)
T PRK10747 243 QGSEGLKRWWKNQSR---KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKV 316 (398)
T ss_pred cCHHHHHHHHHhCCH---HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHH
Confidence 233333333333322 34567788999999999999999999999999994 4466555555544 44999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001357 399 LRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1093)
Q Consensus 399 l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 477 (1093)
+++.++.+|+++..++.+|.++ ..++|++|..+|++++...|+ ...+..++.++...|+.++|..+|++++..
T Consensus 317 ~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 317 LRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD------AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999 999999999999999987554 566778999999999999999999999875
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.72 E-value=3.6e-15 Score=161.90 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001357 108 EHFILATQYYNKASRIDM----HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1093)
...+.++..+.+++...| ..+..|+.+|.++...|++++|+..|.+++..+|+++.+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445578888888886443 2366799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 001357 184 FYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1093)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~ 263 (1093)
.|++++.++|++ ..+++.+|.++...|++++|+..|++++..+|+++.....+ .+....++ +.+|+..|.++...
T Consensus 120 ~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~---~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLD---PKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCC---HHHHHHHHHHHHhh
Confidence 999999999998 67789999999999999999999999999999887422211 22233444 88888888776644
Q ss_pred C
Q 001357 264 Y 264 (1093)
Q Consensus 264 ~ 264 (1093)
.
T Consensus 195 ~ 195 (296)
T PRK11189 195 L 195 (296)
T ss_pred C
Confidence 3
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=9.2e-16 Score=165.96 Aligned_cols=258 Identities=14% Similarity=0.122 Sum_probs=215.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHH
Q 001357 452 NNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNL 531 (1093)
Q Consensus 452 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 531 (1093)
+..|+.+++.|++.+|.-.|+.++. .+|..+.+|..|
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVk-------------------------------------------qdP~haeAW~~L 325 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVK-------------------------------------------QDPQHAEAWQKL 325 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHh-------------------------------------------hChHHHHHHHHh
Confidence 5679999999999999999999998 678999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHh-------hhhhh
Q 001357 532 ARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML-------GDLEL 604 (1093)
Q Consensus 532 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------~~~~~ 604 (1093)
|.+....++-..|+..++++++++|++..++..||..|...|.-.+|+.++.+-+...|........- ..-..
T Consensus 326 G~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~ 405 (579)
T KOG1125|consen 326 GITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFL 405 (579)
T ss_pred hhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999998887543322110 00112
Q ss_pred cccchHHHHHHHHHhhhcCCC-CChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 001357 605 KNDDWVKAKETFRAASDATDG-KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGV 683 (1093)
Q Consensus 605 ~~g~~~~A~~~~~~~l~~~~~-~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~ 683 (1093)
....+..-.+.|-.+....|. .|+.....||.+ |+.. |.|++|+.+|+.+|...|+|...|+.||-
T Consensus 406 ~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL-y~ls------------~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 406 DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL-YNLS------------GEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH-Hhcc------------hHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 223355556666666665553 677788889999 9888 99999999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC--------HHHHHH
Q 001357 684 VLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--------AQILLY 755 (1093)
Q Consensus 684 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~l~~ 755 (1093)
.++...+..+|+..|.+++++.| ....+++|||.+++.+|-|.+|+.+|-.||...+.... -.+|.+
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP-----~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~t 547 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQP-----GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQT 547 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCC-----CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHH
Confidence 99999999999999999999998 78899999999999999999999999999987544221 246666
Q ss_pred HHHHHHhhccHHHHH
Q 001357 756 LARTHYEAEQWQDCK 770 (1093)
Q Consensus 756 la~~~~~~g~~~~A~ 770 (1093)
|=.++...++.+-+.
T Consensus 548 LR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 548 LRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHHcCCchHHH
Confidence 666666666655433
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.71 E-value=4.7e-15 Score=142.44 Aligned_cols=209 Identities=21% Similarity=0.206 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1093)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1093)
..+++.+|..|+..|++..|...++++|+.+|++..+|..++.+|...|. .+.|-+.|++++.++|++..++++.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge---~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE---NDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---hhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 56788889999999999999999999999999999999999999999988 888999999999999988888888888
Q ss_pred HHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC
Q 001357 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1093)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1093)
.++..|.+++|...|++++... ..+..+.++.++|.|..+.|+++.|..+|.+++. .+|.+..+...++..++..|
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P-~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADP-AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAG 187 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCC-CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcc
Confidence 8888888888888888877643 3345567788888888888888888888888887 56677777778888888888
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001357 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQA 412 (1093)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 412 (1093)
+|-.|..+++......+-....+.....+-...|+.+.+-.+=.++....|.....
T Consensus 188 ~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 188 DYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred cchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 88888888888777777677777777777777888877777777777777766543
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.70 E-value=5e-15 Score=160.79 Aligned_cols=150 Identities=11% Similarity=0.067 Sum_probs=122.0
Q ss_pred cCCHHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHH
Q 001357 141 KGEVEQASSAFKIVLEADR---D-NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA 216 (1093)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p---~-~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A 216 (1093)
.+..+.++..+.+++...| . .+..++.+|.++...|++.+|+..|.+++..+|++ +.+++.+|.++...|+++.|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-ADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 3567888999999986433 3 36779999999999999999999999999999998 78899999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1093)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (1093)
+..|.++++++|++..++..+|.++...|+ +++|+..|.+++..+|+++..... ..+....+++++|+..+.+..
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~---~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGR---YELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999988 999999999999999988732111 122233455555555554443
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=8.4e-15 Score=140.77 Aligned_cols=209 Identities=23% Similarity=0.254 Sum_probs=183.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h
Q 001357 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I 421 (1093)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~ 421 (1093)
.+.+.||.-|+..|++..|...++++++.+|++..+|..++.+|...|..+.|.+.|++++.++|++.+++++.|..+ .
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999999988 8
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHH
Q 001357 422 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (1093)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1093)
+|.+++|...|.+++.. |. -..+..++.|+|.|..+.|+++.|..+|++++.
T Consensus 116 qg~~~eA~q~F~~Al~~-P~--Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~------------------------- 167 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PA--YGEPSDTLENLGLCALKAGQFDQAEEYLKRALE------------------------- 167 (250)
T ss_pred CCChHHHHHHHHHHHhC-CC--CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH-------------------------
Confidence 89999999999988763 22 233467889999999999999999999999988
Q ss_pred hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (1093)
Q Consensus 502 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 581 (1093)
.+|..+.....++..+...|++..|..+++......+-..+.+...+.+....|+-+.+-.+
T Consensus 168 ------------------~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 168 ------------------LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred ------------------hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 56788888899999999999999999999988888787788888888888899999999888
Q ss_pred HHHHHHHcCCChhHHH
Q 001357 582 VNEALKVNGKYPNALS 597 (1093)
Q Consensus 582 ~~~al~~~p~~~~~~~ 597 (1093)
-.+.....|.+++.-.
T Consensus 230 ~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 230 QAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHhCCCcHHHHh
Confidence 8888888888776543
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.70 E-value=6.6e-14 Score=156.91 Aligned_cols=255 Identities=25% Similarity=0.219 Sum_probs=210.9
Q ss_pred hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-----CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc--
Q 001357 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT-----NHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-- 335 (1093)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 335 (1093)
..|.-..+...++..|...|+|+.|+.++..++... ...+........+|.+|..+++|.+|+.+|++++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 356677777889999999999999999999988652 1234444556679999999999999999999999743
Q ss_pred ---CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 336 ---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--------PDNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1093)
Q Consensus 336 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 404 (1093)
..+|..+.++.+|+.+|...|++.+|..++++++.+. |.-...+..++.++...+++++|..+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3567778889999999999999999999999998863 33346788899999999999999999999987
Q ss_pred hC--------CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 405 ID--------PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFK 472 (1093)
Q Consensus 405 ~~--------p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~ 472 (1093)
+. |.-+..+.+||.+| ..|++.+|..+|++++.+......... ...++++|..|.+.+.+.+|..+|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 62 34467889999999 999999999999999999877644322 4678899999999999999999999
Q ss_pred HHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001357 473 DALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL 552 (1093)
Q Consensus 473 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 552 (1093)
++..+... . -...|.....+.+|+.+|..+|+++.|+++...++
T Consensus 434 ~~~~i~~~---~---------------------------------g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMKL---C---------------------------------GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHH---h---------------------------------CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99874210 0 01567788899999999999999999999999887
Q ss_pred H
Q 001357 553 F 553 (1093)
Q Consensus 553 ~ 553 (1093)
.
T Consensus 478 ~ 478 (508)
T KOG1840|consen 478 N 478 (508)
T ss_pred H
Confidence 4
No 78
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.2e-15 Score=155.79 Aligned_cols=274 Identities=19% Similarity=0.206 Sum_probs=230.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1093)
+...|..|+..|+.++...|.+...|..++.++...|+|++|....++.+.++|..+......+.++...++..+|...|
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 45667799999999999999999999999999999999999999999999999999888888888888888877777655
Q ss_pred HHHH---------------HhC---CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhH
Q 001357 186 KRAL---------------QVH---PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1093)
Q Consensus 186 ~~al---------------~~~---p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1093)
+..- ..+ |.+ ..+.+.-+.|+..+|+++.|...--..+++++.+..+++..|.++....+
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac-~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~- 218 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPAC-FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN- 218 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchh-hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc-
Confidence 5211 111 222 34566788999999999999999999999999999999999999999888
Q ss_pred HhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 001357 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLY 327 (1093)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 327 (1093)
.+.|+..|++++.++|....+-... ..+.....+...|.-.++.|+|..|.+.
T Consensus 219 --~~ka~~hf~qal~ldpdh~~sk~~~-------------------------~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 219 --ADKAINHFQQALRLDPDHQKSKSAS-------------------------MMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred --hHHHHHHHhhhhccChhhhhHHhHh-------------------------hhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 9999999999999999876432211 0122336777788999999999999999
Q ss_pred HHHHHHhcCC-CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 328 YMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1093)
Q Consensus 328 ~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 406 (1093)
|..++...|. ...++..|.+++.+...+|+..+|+..++.+++++|....++...|.|+..+++|++|++.|+++++..
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999984332 123456688899999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 001357 407 PR 408 (1093)
Q Consensus 407 p~ 408 (1093)
.+
T Consensus 352 ~s 353 (486)
T KOG0550|consen 352 KD 353 (486)
T ss_pred cc
Confidence 44
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.69 E-value=7.3e-14 Score=156.60 Aligned_cols=257 Identities=23% Similarity=0.279 Sum_probs=206.2
Q ss_pred ccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-----CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1093)
Q Consensus 297 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1093)
.....|....+...++..|...|+|+.|...+..+++.+. ..+........+|.+|...+++.+|+.+|++++.+
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455677778888899999999999999999999998521 23344444556999999999999999999999986
Q ss_pred --------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 001357 372 --------YPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--------PRDAQAFIDLGELL-ISSDTGAALDAFKT 434 (1093)
Q Consensus 372 --------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--------p~~~~~~~~la~~~-~~~~~~~A~~~~~~ 434 (1093)
+|.-..++.+|+.+|...|++.+|..++++++.+. |.-...+.+++.++ ..+.+++|..++++
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 34456789999999999999999999999998763 34456677788888 89999999999999
Q ss_pred HHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhh
Q 001357 435 ARTLLKKAGEEVP---IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRF 511 (1093)
Q Consensus 435 a~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 511 (1093)
++++..+...... +.++.++|.+|+..|++.+|..+|++++.......
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~----------------------------- 401 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL----------------------------- 401 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc-----------------------------
Confidence 9999885433333 68899999999999999999999999998521000
Q ss_pred ccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-------cCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 512 ENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK-------YQDYVDAYLRLAAIAKARNNLQLSIELVNE 584 (1093)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 584 (1093)
....+.....+.++|..+.+.+.+.+|..+|..++.+ +|+...+|.+|+.+|..+|+++.|+++...
T Consensus 402 ------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 402 ------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK 475 (508)
T ss_pred ------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0023455678888999999999999999998887753 345567788888888888888888888877
Q ss_pred HHHH
Q 001357 585 ALKV 588 (1093)
Q Consensus 585 al~~ 588 (1093)
++..
T Consensus 476 ~~~~ 479 (508)
T KOG1840|consen 476 VLNA 479 (508)
T ss_pred HHHH
Confidence 7643
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=2.5e-14 Score=151.60 Aligned_cols=202 Identities=23% Similarity=0.282 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1093)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1093)
...++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|+ +.+|+..+.+++...|.+..++..++.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE---LEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666655 566666666666665555555555555
Q ss_pred HHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC
Q 001357 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1093)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1093)
++...|++++|...+..++... ..+.....+..+|.++...|++++|..+|.+++. ..|....++..+|.++...|
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcC
Confidence 5555555555555555554321 1123344556666666666666666666666665 33444555666666666666
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 405 (1093)
++++|+.++++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666666666666666666666666666666666666666666555443
No 81
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=7.8e-15 Score=151.76 Aligned_cols=312 Identities=16% Similarity=0.139 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDL 242 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 242 (1093)
.-....+..+++..+|.+|+..|..++...|++ ...|...+.++...|+++.|.-..+..++++|..+......+.++.
T Consensus 50 e~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~-a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 50 EEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN-ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc-hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 345667777788888888888888888888888 6667788888888888888888888888888887777777777777
Q ss_pred HhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHH
Q 001357 243 QANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYE 322 (1093)
Q Consensus 243 ~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~ 322 (1093)
..++ ..+|...++ +.. ++ ...
T Consensus 129 a~~~---~i~A~~~~~--------~~~-------------------------------------~~-----------~~a 149 (486)
T KOG0550|consen 129 ALSD---LIEAEEKLK--------SKQ-------------------------------------AY-----------KAA 149 (486)
T ss_pred hhHH---HHHHHHHhh--------hhh-------------------------------------hh-----------HHh
Confidence 7666 555544444 000 00 112
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 323 KAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1093)
Q Consensus 323 ~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 402 (1093)
.|+..+++.+......|....+.+.-+.++...|++++|+..--.++++++.+..+++..|.+++..++.+.|+..|+++
T Consensus 150 nal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qa 229 (486)
T KOG0550|consen 150 NALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQA 229 (486)
T ss_pred hhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhh
Confidence 23333333333222334445566777899999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhh
Q 001357 403 AKIDPRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLT 482 (1093)
Q Consensus 403 l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 482 (1093)
+.++|+...+-..... .. ....+..-|.-.++.|++..|.+.|..++.+.|.
T Consensus 230 l~ldpdh~~sk~~~~~----------------~k----------~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-- 281 (486)
T KOG0550|consen 230 LRLDPDHQKSKSASMM----------------PK----------KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-- 281 (486)
T ss_pred hccChhhhhHHhHhhh----------------HH----------HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--
Confidence 9999986544321111 11 1344556688899999999999999999996431
Q ss_pred hcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHH
Q 001357 483 LLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAY 562 (1093)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 562 (1093)
....++..+.+++.+...+|+..+|+...+.++.++|.+..++
T Consensus 282 -------------------------------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 282 -------------------------------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred -------------------------------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 1224677899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhh
Q 001357 563 LRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLG 600 (1093)
Q Consensus 563 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 600 (1093)
...|.++..++++++|+..|+++++...+ ......+.
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence 99999999999999999999999998766 55444443
No 82
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=2e-14 Score=152.25 Aligned_cols=197 Identities=22% Similarity=0.289 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 83 IAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV 162 (1093)
Q Consensus 83 ~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (1093)
..++..++..|...|+.. +|+..|.+++..+|.+..++..+|.++...|++++|+..|++++...|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~-----------~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLE-----------VAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 445555666666555544 666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRALQVH--PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
.++..+|.++...|++++|+..|.+++... |.. ...+..+|.++...|++++|...|.+++..+|++..++..++.+
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQP-ARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 666666666666666666666666666542 222 34455566666666666666666666666666666666666666
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 001357 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETA 294 (1093)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 294 (1093)
+...|+ +++|+..+++++...|.++..+..++.++...|+.+.|..+.+.+
T Consensus 179 ~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 179 YYLRGQ---YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666 666666666666665555555555555555555555555544433
No 83
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=6.3e-13 Score=133.56 Aligned_cols=300 Identities=20% Similarity=0.249 Sum_probs=207.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHH
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC----PGAIRLGIGLC 206 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~~la~~ 206 (1093)
-|..|.-++...+.++|+..|-.+++.+|....+.+.+|..+.+.|..+.|+.+.+.++. .|+. ...+.+.+|.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 455788889999999999999999999999999999999999999999999999987765 4554 23467789999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFL 286 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 286 (1093)
|+..|-++.|...|.......---..++..|..+|....+ +.+|+....+..++.+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre---W~KAId~A~~L~k~~~q~~~~---------------- 177 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE---WEKAIDVAERLVKLGGQTYRV---------------- 177 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHcCCccchh----------------
Confidence 9999999999999998877555566788888888888888 888998888888887654321
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 001357 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1093)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1093)
..+..|..++..+....+++.|+..+.++++ .+|..+.+-..+|.+....|+|..|++.++
T Consensus 178 ----------------eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e 238 (389)
T COG2956 178 ----------------EIAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELAKGDYQKAVEALE 238 (389)
T ss_pred ----------------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHhccchHHHHHHHH
Confidence 1124455566666666666666666666666 556666666667777777777777777777
Q ss_pred HHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCC
Q 001357 367 KVLEIYPDN-CETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGE 444 (1093)
Q Consensus 367 ~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~ 444 (1093)
.+++.+|.. +.+.-.|..||.+.|+..+.+..+.++....++. .+...++.+. ...-.+.|..++.+-+...|.
T Consensus 239 ~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt--- 314 (389)
T COG2956 239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGIDAAQAYLTRQLRRKPT--- 314 (389)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc---
Confidence 777666654 3566666667777777777777777666665543 2333344433 444445555544443333222
Q ss_pred CCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHh
Q 001357 445 EVPIEVLNNIGVIH---FEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 445 ~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~ 476 (1093)
....+.+.... ..-|...+.+..+..++.
T Consensus 315 ---~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 315 ---MRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ---HHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33333333322 245555666666666655
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=4.5e-13 Score=134.59 Aligned_cols=285 Identities=16% Similarity=0.122 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-CCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 001357 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1093)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1093)
++|+..|..+++.+|....+...||++|...|..+.|+.+....+...+.. .....+.+.+|.-|...|-++.|...|.
T Consensus 52 dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~ 131 (389)
T COG2956 52 DKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFN 131 (389)
T ss_pred chHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 344444444444444444444444444444444444444444443322111 1233567788888888888888888888
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN-----CETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1093)
Q Consensus 330 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 404 (1093)
..++ .+.-...+.-.|..+|....+|++||.+.++..+..+.. ...++.++..+....+++.|+..+.++++
T Consensus 132 ~L~d---e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 132 QLVD---EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ 208 (389)
T ss_pred HHhc---chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 8774 233344567778888889999999999999888887653 35677888888888899999999999999
Q ss_pred hCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhh
Q 001357 405 IDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTL 483 (1093)
Q Consensus 405 ~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 483 (1093)
.+|....+-+.+|.+. ..|++..|++.++.+++..+.. .++++..+..+|.+.|+.++.+.++.++....
T Consensus 209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y----l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~----- 279 (389)
T COG2956 209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY----LSEVLEMLYECYAQLGKPAEGLNFLRRAMETN----- 279 (389)
T ss_pred hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-----
Confidence 9999999999999998 8999999999998888765543 46788888999999999999999999888732
Q ss_pred cccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHH
Q 001357 484 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYL 563 (1093)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 563 (1093)
..+.+...++..-....-.+.|..++.+-+..+|+-...+.
T Consensus 280 ---------------------------------------~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~r 320 (389)
T COG2956 280 ---------------------------------------TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHR 320 (389)
T ss_pred ---------------------------------------CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHH
Confidence 13344455566666666678888888888888998644433
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHH
Q 001357 564 RLAAIAKAR--NNLQLSIELVNEAL 586 (1093)
Q Consensus 564 ~la~~~~~~--g~~~~A~~~~~~al 586 (1093)
.+..-.... |...+.+..+..++
T Consensus 321 l~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 321 LMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHhhhccccccchhhhHHHHHHHH
Confidence 333222222 33455555555544
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.64 E-value=5.2e-12 Score=143.94 Aligned_cols=316 Identities=16% Similarity=0.161 Sum_probs=187.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
...++....++...|++++|+..+......-++....+-.+|.++.++|++++|...|..++..+|++ ...+..+..|.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-~~Yy~~L~~~~ 82 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-YDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHH
Confidence 45677788888899999999999988888888888888999999999999999999999999999988 66667777776
Q ss_pred HHcC-----CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001357 208 YKLG-----QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGME-KMQRAFEIYPYCAMALNYLANHFFFT 281 (1093)
Q Consensus 208 ~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~-~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1093)
.-.. ....-..+|.......|....+.. +...+. .|+ .+...+. ++...+.. .-|.++..+-.+|...
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~-~g~--~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~ 156 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFL-EGD--EFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDP 156 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhH-hhcccC-CHH--HHHHHHHHHHHHHHhc--CCchHHHHHHHHHcCh
Confidence 3332 456667778877777776443321 111111 122 1433333 33333332 2344444444444322
Q ss_pred CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHHHcCCHHH
Q 001357 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKLGDFRS 360 (1093)
Q Consensus 282 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 360 (1093)
....-...++......... .+.+. ... .....+|. ...+++.+++.|...|++++
T Consensus 157 ~K~~~i~~l~~~~~~~l~~-----------------~~~~~----~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~ 212 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLES-----------------NGSFS----NGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEK 212 (517)
T ss_pred hHHHHHHHHHHHHHHhhcc-----------------cCCCC----Ccc---ccccCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 2222222222222211000 00000 000 00001222 23445666777777777777
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001357 361 ALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1093)
Q Consensus 361 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 439 (1093)
|+.++++++...|..++.+...|.++-..|++.+|...++.+..+++.+-.+-...+..+ +.|+.++|...+....+..
T Consensus 213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 777777777777777777777777777777777777777777777766666655556555 6677777666544332211
Q ss_pred HhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 440 KKAGEEVP------IEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 440 ~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 476 (1093)
. +...+ .......|.+|.+.|++..|+..|..+..
T Consensus 293 ~--~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 293 V--DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred C--CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0 00000 23334567788888888888888877766
No 86
>PLN02789 farnesyltranstransferase
Probab=99.62 E-value=2.5e-13 Score=146.51 Aligned_cols=212 Identities=13% Similarity=-0.020 Sum_probs=167.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH--HHH
Q 001357 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL--GKA 216 (1093)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~--~~A 216 (1093)
..+.+++|+..+.+++..+|.+..+|..++.++...| .+.+++..+.+++..+|++ ..+|...+.++.++|.. ..+
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn-yqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN-YQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc-hHHhHHHHHHHHHcCchhhHHH
Confidence 4567888999999999999999999999999999988 6799999999999999998 66788888888888874 678
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 001357 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALA 296 (1093)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 296 (1093)
+.++.+++..+|.|..+|...+.++...|. +++++..+.++++.+|.+..+|+..+.++...+...
T Consensus 128 l~~~~kal~~dpkNy~AW~~R~w~l~~l~~---~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~----------- 193 (320)
T PLN02789 128 LEFTRKILSLDAKNYHAWSHRQWVLRTLGG---WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG----------- 193 (320)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc-----------
Confidence 888999999999999999999999998888 899999999999999999888888777655432100
Q ss_pred ccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 001357 297 VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK----LGDFRSALTNFEKVLEIY 372 (1093)
Q Consensus 297 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~ 372 (1093)
. .....+.++.+..+++. ..|.+..+|+.++.++.. .++..+|+..+..++...
T Consensus 194 ----------------~---~~~~~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 194 ----------------G---LEAMRDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred ----------------c---ccccHHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 0 00113456666666666 556677777777777766 345566888888877777
Q ss_pred CCcHHHHHHHHHHHHH
Q 001357 373 PDNCETLKALGHIYVQ 388 (1093)
Q Consensus 373 p~~~~~~~~la~~~~~ 388 (1093)
|.++.++-.|+.+|..
T Consensus 252 ~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 252 SNHVFALSDLLDLLCE 267 (320)
T ss_pred CCcHHHHHHHHHHHHh
Confidence 8888888888888875
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.62 E-value=1.7e-12 Score=147.17 Aligned_cols=205 Identities=20% Similarity=0.173 Sum_probs=157.7
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIR 200 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 200 (1093)
+|+++.++..+|.++...|+++.|...+.++....|.+ ....+..+.+++..|++++|+..+++++..+|.+. .++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-~a~ 80 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-LAL 80 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHH
Confidence 78889999999999999999999888888888777654 45677788889999999999999999999999884 333
Q ss_pred HHHHHHHHHcCCH----HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 201 LGIGLCRYKLGQL----GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1093)
Q Consensus 201 ~~la~~~~~~g~~----~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1093)
.. +..+..+|.+ ..+...+......+|....++..++.++...|+ +.+|+..+++++.++|.++.++..++.
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~---~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ---YDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 32 4455554444 444444444335566677777788888888888 889999999999999998888888888
Q ss_pred HHHHcCChHHHHHHHHHHHhccCCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001357 277 HFFFTGQHFLVEQLTETALAVTNHGPT-KSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1093)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1093)
+++..|++++|+.++.+++...+..+. ....+..++.++...|++++|+..|.+++.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888888888888865543222 234566788888888888888888888764
No 88
>PLN02789 farnesyltranstransferase
Probab=99.61 E-value=3.3e-13 Score=145.57 Aligned_cols=240 Identities=12% Similarity=-0.048 Sum_probs=204.4
Q ss_pred CCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHcCCChhHHHHh
Q 001357 521 PWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-NLQLSIELVNEALKVNGKYPNALSML 599 (1093)
Q Consensus 521 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l 599 (1093)
.+....++-.+-.++...+..++|+..+.+++..+|.+..+|...+.++...| .+.+++.++.+++..+|.+..+|...
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R 112 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR 112 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence 44555666666677888899999999999999999999999999999999998 68999999999999999999999999
Q ss_pred hhhhhcccch--HHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 001357 600 GDLELKNDDW--VKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677 (1093)
Q Consensus 600 ~~~~~~~g~~--~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a 677 (1093)
++++.+.|.. ..++..+.+++...|. +..++...+.+ +... |.+++|++++.++++.+|.|..+
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~-l~~l------------~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWV-LRTL------------GGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHH-HHHh------------hhHHHHHHHHHHHHHHCCCchhH
Confidence 9999888874 7789999999999887 88899999988 8777 99999999999999999999999
Q ss_pred HHHHHHHHHhc---CCc----hhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHH----hcCHHHHHHHHHHHHHhhcC
Q 001357 678 ANGAGVVLAEK---GQF----DVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFA----QGNFALAMKMYQNCLRKFYY 746 (1093)
Q Consensus 678 ~~~la~~~~~~---g~~----~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~ 746 (1093)
|+..+.++... |.+ +.++.+..+++...| .+..+|..++.++.. .++..+|+..+..++.. .
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-----~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~ 251 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-----RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--D 251 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-----CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--c
Confidence 99999998776 333 478888899999998 788999999999988 45667899998888775 5
Q ss_pred CCCHHHHHHHHHHHHhhc------------------cHHHHHHHHHHHHHhCC
Q 001357 747 NTDAQILLYLARTHYEAE------------------QWQDCKKSLLRAIHLAP 781 (1093)
Q Consensus 747 ~~~~~~l~~la~~~~~~g------------------~~~~A~~~~~~al~~~P 781 (1093)
+..+.++..|+.+|.... ...+|.++|..+-+.+|
T Consensus 252 ~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 252 SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 667889999999998632 23556666666644444
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.60 E-value=4.6e-12 Score=144.40 Aligned_cols=327 Identities=16% Similarity=0.136 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHH
Q 001357 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1093)
Q Consensus 448 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 527 (1093)
.+++.....++...|++++|+.++..... .-.+...+
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~-------------------------------------------~I~Dk~~~ 40 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEK-------------------------------------------QILDKLAV 40 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhh-------------------------------------------hCCCHHHH
Confidence 35556667777888888888888876554 23456677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHcCCC----------
Q 001357 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARN-----NLQLSIELVNEALKVNGKY---------- 592 (1093)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~---------- 592 (1093)
.-..|.++..+|++++|...|..++..+|++...|..+..+..... +...-..+|+......|..
T Consensus 41 ~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~ 120 (517)
T PF12569_consen 41 LEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF 120 (517)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhccc
Confidence 7778888888888888888888888888888777777777663322 3455566666666655543
Q ss_pred ----------------------hhHHHHhhhhhhcccchHHHHHHHHHhhhc---C---C--------CCCh--HHHHHh
Q 001357 593 ----------------------PNALSMLGDLELKNDDWVKAKETFRAASDA---T---D--------GKDS--YATLSL 634 (1093)
Q Consensus 593 ----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~---~--------~~d~--~~~~~l 634 (1093)
|.++.++-.+|....+..-...++...+.. . + .+.. ++++.+
T Consensus 121 ~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l 200 (517)
T PF12569_consen 121 LEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL 200 (517)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHH
Confidence 223344444444333332222333332211 0 0 1111 333444
Q ss_pred HhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCch
Q 001357 635 GNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP 714 (1093)
Q Consensus 635 ~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 714 (1093)
+.. |... |++++|+.++++++...|+.+..+...|.+|.+.|++.+|...++.+..+++ .+-
T Consensus 201 Aqh-yd~~------------g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-----~DR 262 (517)
T PF12569_consen 201 AQH-YDYL------------GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-----ADR 262 (517)
T ss_pred HHH-HHHh------------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-----hhH
Confidence 544 5555 9999999999999999999999999999999999999999999999999986 445
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCC-CC------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC--Ccc
Q 001357 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN-TD------AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPS--NYT 785 (1093)
Q Consensus 715 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~------~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~--~~~ 785 (1093)
-+-...+..+++.|++++|...+....+.-.++ .+ .+.....|.+|++.|++..|++.|..+.+..-. +..
T Consensus 263 yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQ 342 (517)
T PF12569_consen 263 YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQ 342 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 555667888999999999999954433321111 11 223346799999999999999999998887653 344
Q ss_pred hhhHHHHHHHHHHHHHhhhcCCChHHHhhhchhhHHHHHHHHHHHHHHHhhCC
Q 001357 786 LRFDAGVAMQKFSASTLQKTRRTADEVWHDNTVLRVAELENAVRVFSHLSAAS 838 (1093)
Q Consensus 786 ~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~l~~~~ 838 (1093)
+-||. .|+.++..+.+-...+.-+.+.. ...-+.....|++++-.|....
T Consensus 343 fDFH~-Yc~RK~t~r~Y~~~L~~ed~l~~--~~~y~raa~~ai~iYl~l~d~~ 392 (517)
T PF12569_consen 343 FDFHS-YCLRKMTLRAYVDMLRWEDKLRS--HPFYRRAAKGAIRIYLELHDKP 392 (517)
T ss_pred ccHHH-HHHhhccHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHhcCc
Confidence 45554 45788777666665554444443 2224556788889888887654
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.59 E-value=2.2e-12 Score=146.23 Aligned_cols=306 Identities=15% Similarity=0.076 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 82 RIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEAD 158 (1093)
Q Consensus 82 ~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 158 (1093)
....+..++.+|...|... .|...+.++....|.+ ....+..+.++...|++++|...+++++..+
T Consensus 5 ~~~a~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~ 73 (355)
T cd05804 5 FALGHAAAALLLLLGGERP-----------AAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY 73 (355)
T ss_pred cHHHHHHHHHHHHhcCCcc-----------hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3556778888888887655 5666777766666644 4567788999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH----HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRAL----QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al----~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
|++..++.. +..++..|.+..+...+.+++ ..+|.. ...+..+|.++..+|++++|...+++++.++|++..++
T Consensus 74 P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~ 151 (355)
T cd05804 74 PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY-WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAV 151 (355)
T ss_pred CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHH
Confidence 999988775 666666655554444444444 344554 55667789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHH-HH
Q 001357 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA----MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS-YY 309 (1093)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~ 309 (1093)
..++.++...|+ +++|+..+.+++...|..+ ..+..++.++...|++++|+.+++.++...+..+..... -.
T Consensus 152 ~~la~i~~~~g~---~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (355)
T cd05804 152 HAVAHVLEMQGR---FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDA 228 (355)
T ss_pred HHHHHHHHHcCC---HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhH
Confidence 999999999999 9999999999999887433 345689999999999999999999986443211111111 00
Q ss_pred -HHHHHHHhcCCHHHHHHH--H-HHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------cH
Q 001357 310 -NLARSYHSKGDYEKAGLY--Y-MASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---------NC 376 (1093)
Q Consensus 310 -~la~~~~~~g~~~~A~~~--~-~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~ 376 (1093)
.+...+...|....+..+ + .......+. +.........+.++...|+.+.|...+..+...... ..
T Consensus 229 ~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 307 (355)
T cd05804 229 ASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDV 307 (355)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhh
Confidence 222333333432222222 1 111110001 111222234556666666677666666665442211 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 377 ETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1093)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~l~~~l~ 404 (1093)
.+....+.++...|+++.|+..+..++.
T Consensus 308 ~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 308 GLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555666666665555554
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=2.9e-12 Score=126.73 Aligned_cols=421 Identities=16% Similarity=0.110 Sum_probs=232.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001357 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 218 (1093)
Q Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 218 (1093)
....+|..|+.++..-...+|.+...+..+|.||+...+|..|-.+|+++-...|.. ...++..+..+++.+.+..|+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-EQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-HHHHHHHHHHHHHhcccHHHHH
Confidence 445566666666666666666666666666666666666666666666666666666 5556666666666666666666
Q ss_pred HHHHHHhhCCC-cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 219 AFQRALQLDPE-NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1093)
Q Consensus 219 ~~~~al~~~p~-~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (1093)
+...+... |. ...++..-+.+....++ +..+..+. +.-| +........|.+.++.|+|+.|.+-|..++
T Consensus 100 V~~~~~D~-~~L~~~~lqLqaAIkYse~D---l~g~rsLv----eQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 100 VAFLLLDN-PALHSRVLQLQAAIKYSEGD---LPGSRSLV----EQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHHhcCC-HHHHHHHHHHHHHHhccccc---CcchHHHH----HhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 65554332 11 11222223333333444 33333322 2223 345566666777777777777777777777
Q ss_pred hccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 296 AVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374 (1093)
Q Consensus 296 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 374 (1093)
..++..| ..-++++.++++.|++..|+++....+... ...|........-|.--...|+. +.....+
T Consensus 172 qvsGyqp---llAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt---~~lh~Sa------ 239 (459)
T KOG4340|consen 172 QVSGYQP---LLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT---LVLHQSA------ 239 (459)
T ss_pred hhcCCCc---hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch---HHHHHHH------
Confidence 6654433 566777777777777777777777666532 12222211000000000001111 1111111
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 001357 375 NCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLN 452 (1093)
Q Consensus 375 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 452 (1093)
-.++++..+.++++.++++.|.+.+..+--.. .-++..+.+++..-..+++.....-+.-.+.+. +.+.+++.
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~n-----PfP~ETFA 314 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQN-----PFPPETFA 314 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcC-----CCChHHHH
Confidence 24567777888889999988887765442211 124666777776666667766666665555542 34678888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHH
Q 001357 453 NIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLA 532 (1093)
Q Consensus 453 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la 532 (1093)
++-.+|++..-|+.|...+-+--... . .-.....+++-
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lT-----------------------------------------y-k~L~~Yly~LL 352 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLT-----------------------------------------Y-KFLTPYLYDLL 352 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchh-----------------------------------------H-HHhhHHHHHHH
Confidence 88888888888888877764422210 0 00112223332
Q ss_pred HHH-HhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccc
Q 001357 533 RLL-EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNN---LQLSIELVNEALKVNGKYPNALSMLGDLELKNDD 608 (1093)
Q Consensus 533 ~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 608 (1093)
..+ ...-..++|.+-+..+-....+.......-.......++ ...++.-|+.+++.. ..+....+++|+...+
T Consensus 353 daLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~D 429 (459)
T KOG4340|consen 353 DALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLED 429 (459)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccc
Confidence 222 223445555554444332211111100000111111111 233455555555543 4567788999999999
Q ss_pred hHHHHHHHHHhhhcCCCCChHH
Q 001357 609 WVKAKETFRAASDATDGKDSYA 630 (1093)
Q Consensus 609 ~~~A~~~~~~~l~~~~~~d~~~ 630 (1093)
|..+.+.|.........++.+-
T Consensus 430 y~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 430 YPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred cHHHHHHHHHHHhhhcccceee
Confidence 9999999999998877766653
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=1.3e-11 Score=122.32 Aligned_cols=288 Identities=13% Similarity=0.081 Sum_probs=217.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1093)
++..|..|++++..-...+|.+...+..+|.||+...+|..|..+|++.-...|......+..|..+++.+.+..|+.+.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC
Q 001357 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP 265 (1093)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p 265 (1093)
..+... |+......-.-+.+.+..+++..+....++.- ..+........|.+.++.|+ ++.|++.|+.+++...
T Consensus 102 ~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegq---yEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 102 FLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQ---YEAAVQKFQAALQVSG 175 (459)
T ss_pred HHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeecccc---HHHHHHHHHHHHhhcC
Confidence 876543 44334445556777788888888887776531 12567788899999999998 9999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC-CCCC-------------------------chHHHHHHHHHHHhcC
Q 001357 266 YCAMALNYLANHFFFTGQHFLVEQLTETALAVTN-HGPT-------------------------KSHSYYNLARSYHSKG 319 (1093)
Q Consensus 266 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~-------------------------~~~~~~~la~~~~~~g 319 (1093)
..+.+.+.++.+.++.|++..|+++...++...- ..|. ..+++...+-++++.|
T Consensus 176 yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~ 255 (459)
T KOG4340|consen 176 YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLR 255 (459)
T ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcc
Confidence 9999999999999999999999999988875321 1110 1345556667777777
Q ss_pred CHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 320 DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELL 399 (1093)
Q Consensus 320 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 399 (1093)
+++.|.+.+..+--.. ...-.+..+.+++..- ..+++.....-+.-++.++|--.+.+.++-.+|++..-|+-|..++
T Consensus 256 n~eAA~eaLtDmPPRa-E~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 256 NYEAAQEALTDMPPRA-EEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred cHHHHHHHhhcCCCcc-cccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 7777766554332110 0111223344444332 2345666666666677777766677777777777777777666655
Q ss_pred HH
Q 001357 400 RK 401 (1093)
Q Consensus 400 ~~ 401 (1093)
-+
T Consensus 334 AE 335 (459)
T KOG4340|consen 334 AE 335 (459)
T ss_pred hh
Confidence 43
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.53 E-value=2.3e-12 Score=136.36 Aligned_cols=194 Identities=21% Similarity=0.205 Sum_probs=135.4
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG-- 197 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~-- 197 (1093)
.++..+..++.+|..++..|++++|+..|++++..+|.++ .+++.+|.+++..|++++|+..|++++...|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456778899999999999999999999999999999876 57899999999999999999999999999998733
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH
Q 001357 198 AIRLGIGLCRYKL--------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1093)
Q Consensus 198 ~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~ 269 (1093)
.+++.+|.++... |+++.|+..|++++..+|++..++..+..+....+. .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~---~------------------- 165 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR---L------------------- 165 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH---H-------------------
Confidence 3678888888776 566666777777666666665544333222111100 0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHH
Q 001357 270 ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLG 349 (1093)
Q Consensus 270 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la 349 (1093)
......+|..|+..|++.+|+..|..++...+..|....+++.+|
T Consensus 166 -----------------------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~ 210 (235)
T TIGR03302 166 -----------------------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLV 210 (235)
T ss_pred -----------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHH
Confidence 012234555666666666666666666665555555566666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC
Q 001357 350 QVQLKLGDFRSALTNFEKVLEIYP 373 (1093)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p 373 (1093)
.++...|++++|+.+++.+....|
T Consensus 211 ~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 211 EAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 666666666666666666655444
No 94
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.51 E-value=3.1e-12 Score=135.33 Aligned_cols=193 Identities=22% Similarity=0.332 Sum_probs=154.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---
Q 001357 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE--- 232 (1093)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 232 (1093)
++..+..++.+|..++..|+++.|+..|++++..+|.++ ..+++.+|.++...|+++.|+..|+++++.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 455688999999999999999999999999999999873 256899999999999999999999999999998776
Q ss_pred HHHHHHHHHHHhh-----hHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHH
Q 001357 233 ALVALAVMDLQAN-----EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHS 307 (1093)
Q Consensus 233 a~~~la~~~~~~~-----~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 307 (1093)
+++.+|.++.... +.+.+.+|+..|.+++..+|.+..+.. +
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~----------------------------------a 154 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD----------------------------------A 154 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH----------------------------------H
Confidence 6888888887651 112388899999999888888764431 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 001357 308 YYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGH 384 (1093)
Q Consensus 308 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~ 384 (1093)
+..++.... .. ......+|.+++..|++.+|+..|..++...|+. +.+++.+|.
T Consensus 155 ~~~~~~~~~--------------~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~ 211 (235)
T TIGR03302 155 KKRMDYLRN--------------RL---------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVE 211 (235)
T ss_pred HHHHHHHHH--------------HH---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHH
Confidence 111111111 00 1224578889999999999999999999997764 589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Q 001357 385 IYVQLGQIEKAQELLRKAAKIDP 407 (1093)
Q Consensus 385 ~~~~~g~~~~A~~~l~~~l~~~p 407 (1093)
++...|++++|..+++.+....|
T Consensus 212 ~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 212 AYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999988877665
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.49 E-value=7.3e-13 Score=126.43 Aligned_cols=128 Identities=19% Similarity=0.224 Sum_probs=119.0
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001357 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1093)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1093)
-..+|++++.++|++ ++.+|.++...|++++|+..|+.++..+|.+..+++.+|.++...|++++|+..|++++..+
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 357889999999874 66789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001357 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1093)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1093)
|.+ +.+++.+|.|+..+|++++|+..|.+++.+.|+++..+..++.+....
T Consensus 89 p~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999 788999999999999999999999999999999999998888766544
No 96
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.49 E-value=1.1e-08 Score=121.93 Aligned_cols=228 Identities=13% Similarity=0.101 Sum_probs=150.7
Q ss_pred HhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----
Q 001357 121 SRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP---- 196 (1093)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~---- 196 (1093)
...+|.+..+|..++..+...|++++|+..++..+...|+.+.+++.+|.++++.+++.++.-+ .++...+...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4557889999999999999999999999999999999999999999999999999998888766 6666555541
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001357 197 --------------GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1093)
Q Consensus 197 --------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1093)
..+++.+|.||-++|+.++|..+|+++++.+|+|+.++..+|..+... + .++|+.++.+++.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d---L~KA~~m~~KAV~ 177 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D---KEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h---HHHHHHHHHHHHH
Confidence 134555666666666666666666666666666666666666655555 4 5666666665554
Q ss_pred hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch
Q 001357 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI 342 (1093)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 342 (1093)
. |+..++|..+..+..+.+... |.+.+.+.. +.++..... .....+
T Consensus 178 ~--------------~i~~kq~~~~~e~W~k~~~~~---~~d~d~f~~----------------i~~ki~~~~-~~~~~~ 223 (906)
T PRK14720 178 R--------------FIKKKQYVGIEEIWSKLVHYN---SDDFDFFLR----------------IERKVLGHR-EFTRLV 223 (906)
T ss_pred H--------------HHhhhcchHHHHHHHHHHhcC---cccchHHHH----------------HHHHHHhhh-ccchhH
Confidence 3 333444444444444444322 222222221 112221111 011122
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQ 388 (1093)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 388 (1093)
..+.-+-..|...++|++++.++..+++.+|.|..+...++.||..
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 3344455677778888888888888888888888888888888874
No 97
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=5.3e-10 Score=116.79 Aligned_cols=298 Identities=18% Similarity=0.114 Sum_probs=205.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
..-|..-+..|+|.+|.....+.-+..+....+++.-|...-.+|+++.|-.++.++-+..+++...+.+..+..+...|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 34566667778899999888888777777778888888888888999999888888888866665677788888888888
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH---HHHHHHH--HHHHcCChHH
Q 001357 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM---ALNYLAN--HFFFTGQHFL 286 (1093)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~---~~~~la~--~~~~~g~~~~ 286 (1093)
+++.|......++...|.++.++.....+|...|+ +...+..+.+.-+..--+.. -+-..+. ++-..++-..
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~---~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA---WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc---HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 88999988888888889888888888888888888 77777666666554322111 1111111 1111222222
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHH
Q 001357 287 VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFE 366 (1093)
Q Consensus 287 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 366 (1093)
+..+....-..+.....++.....++.-+...|++++|.+....+++.. -+. . +..-.-....+++..-++..+
T Consensus 245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~---~D~-~--L~~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ---WDP-R--LCRLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc---cCh-h--HHHHHhhcCCCCchHHHHHHH
Confidence 2221111111111122334666677777888888888888888887632 111 1 111122346677788888888
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHH
Q 001357 367 KVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLL 439 (1093)
Q Consensus 367 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~ 439 (1093)
+.++..|+++..+..||.+|.+.+.|.+|..+|+.+++..|+ ...+..++.++ ..|+...|...++.++...
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888877663 55677778888 8888888888777777443
No 98
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.43 E-value=3.7e-12 Score=131.38 Aligned_cols=298 Identities=20% Similarity=0.198 Sum_probs=211.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hcCCCCCchhhHHHHHH
Q 001357 275 ANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVK---EINKPHEFIFPYYGLGQ 350 (1093)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~la~ 350 (1093)
+.-+++.|++...+.+|+.+++....+ ...+.+|..+|.+|+.+++|++|+++...-+. .+++....+.+.-+||.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 445566666666666676666554222 22345677788888888888888887654332 22233344455667888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q 001357 351 VQLKLGDFRSALTNFEKVLEIYP------DNCETLKALGHIYVQLGQ--------------------IEKAQELLRKAAK 404 (1093)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~l~~~l~ 404 (1093)
++.-.|.|++|+.++.+-+.... ....+++++|.+|...|+ ++.|.++|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888776532 234688899999987754 3456666666555
Q ss_pred hCCC------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 405 IDPR------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 405 ~~p~------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 476 (1093)
+... ...++-+||..| ..|+++.|+...+.-+.+....++... -.++.++|.+|.-.|+++.|+++|+..+.
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 4321 245677788888 899999999999888888777655433 46889999999999999999999999887
Q ss_pred cchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 001357 477 DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQ 556 (1093)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 556 (1093)
+.... ......+...|.+|..|.....+..|+.++.+-+.+..
T Consensus 264 LAiel-------------------------------------g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 264 LAIEL-------------------------------------GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHHh-------------------------------------cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53211 12334667889999999999999999999998776433
Q ss_pred ------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----CC--ChhHHHHhhhhhhcccch
Q 001357 557 ------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVN----GK--YPNALSMLGDLELKNDDW 609 (1093)
Q Consensus 557 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~--~~~~~~~l~~~~~~~g~~ 609 (1093)
....+++.||..+...|..+.|+.+....+++. .. ...+..++..+.+..|..
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 346788999999999999999999888777653 22 223455565555555543
No 99
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.39 E-value=1.7e-11 Score=126.65 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHhc---CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCC
Q 001357 321 YEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD------NCETLKALGHIYVQLGQ 391 (1093)
Q Consensus 321 ~~~A~~~~~~al~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~ 391 (1093)
++.|.++|..-++.. ...-....++-+||..|+-+|+|+.|+..-+.-+.+... ...++.++|.++.-.|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 345555555444321 122223456788999999999999999988776665322 24688999999999999
Q ss_pred HHHHHHHHHHHHHhC------CCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCC
Q 001357 392 IEKAQELLRKAAKID------PRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGE 463 (1093)
Q Consensus 392 ~~~A~~~l~~~l~~~------p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~~g~ 463 (1093)
++.|+++|+..+.+. .......+.|+..| ...++.+|+.++.+-+.+....++.. ....++.+|..|...|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 999999999987542 22356678889999 88899999999999888877654332 36788999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 001357 464 FESAHQSFKDALGD 477 (1093)
Q Consensus 464 ~~~A~~~~~~al~~ 477 (1093)
.++|+.+....+..
T Consensus 331 h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 331 HRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888774
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.39 E-value=4.1e-11 Score=120.84 Aligned_cols=123 Identities=16% Similarity=0.229 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--hHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVE-FNRGR--YSDSLEF 184 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~-~~~g~--~~~Al~~ 184 (1093)
+...+++..+.+++..+|+++..|+.+|.+|...|+++.|+..|++++..+|+++.++..+|.++ ...|+ +.+|..+
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 44456666677777777777777777777777777777777777777777777777777777654 45555 4677777
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 001357 185 YKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1093)
Q Consensus 185 ~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1093)
++++++.+|++ ..+++.+|.+++..|++++|+.+|++++++.|.+.
T Consensus 133 l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 133 IDKALALDANE-VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 77777777766 55666677777777777777777777776666544
No 101
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=2.6e-09 Score=111.73 Aligned_cols=295 Identities=15% Similarity=0.112 Sum_probs=229.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhh
Q 001357 167 GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-NVEALVALAVMDLQAN 245 (1093)
Q Consensus 167 ~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~~ 245 (1093)
.-|..-+..|+|.+|.+...+.-+..+.. ...++.-+.+--++|+++.|-.++.++-+..++ ...+.+..+.+....|
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 34555667899999999999987777665 566777888999999999999999999998544 5567888999999999
Q ss_pred hHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHH--HHhcCC---
Q 001357 246 EAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS--YHSKGD--- 320 (1093)
Q Consensus 246 ~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~--~~~~g~--- 320 (1093)
+ +..|...+.+++...|.++.++.....+|+..|++.....++..+.+..-.++....-+-..+.. +...++
T Consensus 168 d---~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 168 D---YPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred C---chhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 9 99999999999999999999999999999999999999999998886543333222222222111 111222
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 321 YEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1093)
Q Consensus 321 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1093)
.+.-..+++..-... ...+.....++.-+..+|+.++|.+....+++..-+ +.....+ -....++...=++..+
T Consensus 245 ~~gL~~~W~~~pr~l---r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~--~~l~~~d~~~l~k~~e 318 (400)
T COG3071 245 SEGLKTWWKNQPRKL---RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLI--PRLRPGDPEPLIKAAE 318 (400)
T ss_pred chHHHHHHHhccHHh---hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHH--hhcCCCCchHHHHHHH
Confidence 222222333333322 223445667788899999999999999999987543 2322222 2345678889999999
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001357 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1093)
Q Consensus 401 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 477 (1093)
+.++..|+++..+..||.++ ..+.|.+|..+|+.++...+ +...+..+|.++.+.|+...|...+++++..
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~------s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP------SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999 99999999999998887644 3788999999999999999999999999853
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.38 E-value=9.7e-12 Score=118.71 Aligned_cols=125 Identities=17% Similarity=0.143 Sum_probs=114.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 001357 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLD 227 (1093)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 227 (1093)
..+|+++++.+|++ +..+|.++...|++++|+..|.+++..+|.+ ..+++.+|.++..+|++++|+..|.+++.++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-WRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 46789999999875 5678999999999999999999999999999 7889999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 228 PENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFF 279 (1093)
Q Consensus 228 p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~ 279 (1093)
|+++.+++.+|.++...|+ +.+|+..|.+++...|+++..+..++.+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999988887776654
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=1.2e-09 Score=140.44 Aligned_cols=388 Identities=13% Similarity=0.022 Sum_probs=254.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE-IYPDNCETLKALGH 384 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~la~ 384 (1093)
..+...+..+...|++..|+..+..+- ..+.........+..+...|++..+..++..+-. ....++......+.
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~----d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~ 417 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAG----DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAW 417 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCC----CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHH
Confidence 445556677778888888887665543 2222233345566777778888776666654311 11223445567788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 001357 385 IYVQLGQIEKAQELLRKAAKIDPR---------DAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNI 454 (1093)
Q Consensus 385 ~~~~~g~~~~A~~~l~~~l~~~p~---------~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~l 454 (1093)
++...|++++|...+..+....+. ...+...++.++ ..|+++.|..++..++...+..........+..+
T Consensus 418 ~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~l 497 (903)
T PRK04841 418 LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVL 497 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 888889999999998887654221 123344456666 8899999999998887753321110113456778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHH
Q 001357 455 GVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (1093)
Q Consensus 455 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~ 534 (1093)
|.++...|+++.|...+.+++....... .......++.+++.+
T Consensus 498 g~~~~~~G~~~~A~~~~~~al~~~~~~g-------------------------------------~~~~~~~~~~~la~~ 540 (903)
T PRK04841 498 GEVHHCKGELARALAMMQQTEQMARQHD-------------------------------------VYHYALWSLLQQSEI 540 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhhc-------------------------------------chHHHHHHHHHHHHH
Confidence 8899999999999999999886421000 111234466788999
Q ss_pred HHhcCChHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC-----ChhHHHHhhh
Q 001357 535 LEQIHDTVAASVLYRLILFKYQ--------DYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGK-----YPNALSMLGD 601 (1093)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~ 601 (1093)
+...|++..|...+.+++.... .....+..++.++...|++++|...+.+++..... ....+..++.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 9999999999999998887421 12334567788888899999999999998876432 2345667888
Q ss_pred hhhcccchHHHHHHHHHhhhcCCCCCh-HHH-HH---hHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHH
Q 001357 602 LELKNDDWVKAKETFRAASDATDGKDS-YAT-LS---LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLY 676 (1093)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~l~~~~~~d~-~~~-~~---l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 676 (1093)
++...|++..|...+..+......... ..+ .. +....+... |+.+.|..++.......+....
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~~~~A~~~l~~~~~~~~~~~~ 688 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT------------GDKEAAANWLRQAPKPEFANNH 688 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC------------CCHHHHHHHHHhcCCCCCccch
Confidence 999999999999999988764322111 100 00 111102222 6777777777665543322221
Q ss_pred ----HHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcC
Q 001357 677 ----AANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (1093)
Q Consensus 677 ----a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 746 (1093)
.+..++.++...|++.+|...|.+++........ .....++..+|.++..+|+..+|...+.+++..+..
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 1356778888888888888888888876432111 123456777888888888888888888888887643
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.35 E-value=4.5e-09 Score=135.03 Aligned_cols=345 Identities=15% Similarity=0.111 Sum_probs=252.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--------hHHHHH
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLE-ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--------PGAIRL 201 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--------~~~~~~ 201 (1093)
....+..+...|++..+...+..+-. ....++......+.+++..|++.+|..++..+....+.. ...+..
T Consensus 377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 44456777888988887777665411 112334456778888899999999999999887653221 234455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC------cHHH
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENV-----EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY------CAMA 270 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~------~~~~ 270 (1093)
.++.++...|+++.|...+.+++...|... .++..++.++...|+ +..|...+.+++..... ...+
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~---~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE---LARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 678889999999999999999998655422 345677888888888 99999999998865321 1345
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCC-----CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCCchh
Q 001357 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHG-----PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK--PHEFIF 343 (1093)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~ 343 (1093)
+..++.+++..|+++.|...+.+++...... +.....+..+|.++...|++++|...+.+++..... ......
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 6778999999999999999999988653321 222345667899999999999999999998874321 122345
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HH
Q 001357 344 PYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETL----KALGHIYVQLGQIEKAQELLRKAAKIDPRDA----QA 412 (1093)
Q Consensus 344 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~----~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~----~~ 412 (1093)
++..++.++...|+++.|...+..+....+.. .... ......+...|+.+.|...+.......+... ..
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 56778999999999999999999987753321 1111 1123445567899999998877654322222 12
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001357 413 FIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEV-PIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1093)
Q Consensus 413 ~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 478 (1093)
+..++.++ ..|++.+|...+.+++......+... ...++..+|.++...|+.++|...+.+++...
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 45678888 89999999999999998866644332 24678889999999999999999999999864
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.35 E-value=4e-11 Score=142.30 Aligned_cols=259 Identities=13% Similarity=0.080 Sum_probs=191.6
Q ss_pred CCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHh
Q 001357 520 LPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (1093)
Q Consensus 520 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 599 (1093)
..|.+..++..++..+...+++++|+.++...+..+|+....|+.+|.++...+++..+..+ .++...+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~--------- 94 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS--------- 94 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc---------
Confidence 68889999999999999999999999999999999999999999999999988887666544 4444433
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Q 001357 600 GDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAAN 679 (1093)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~ 679 (1093)
...+| .++.++-..+...+. ..+++..+|.+ |-.+ |+.++|...|+++++.+|+|+.+++
T Consensus 95 -----~~~~~-~~ve~~~~~i~~~~~-~k~Al~~LA~~-Ydk~------------g~~~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 95 -----QNLKW-AIVEHICDKILLYGE-NKLALRTLAEA-YAKL------------NENKKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred -----cccch-hHHHHHHHHHHhhhh-hhHHHHHHHHH-HHHc------------CChHHHHHHHHHHHhcCcccHHHHH
Confidence 33344 333333333333333 56789999999 9999 9999999999999999999999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC----------
Q 001357 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD---------- 749 (1093)
Q Consensus 680 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------- 749 (1093)
++|..|... ++++|+.++.+++... ...++|..+..++++.+..-+..-+
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~~-------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYRF-------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVL 214 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHH-------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 999999999 9999999999998863 3334555666666555554222111
Q ss_pred --------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH--HHhhhcCCChHHHhhhchhh
Q 001357 750 --------AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA--STLQKTRRTADEVWHDNTVL 819 (1093)
Q Consensus 750 --------~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 819 (1093)
+.++.-|-..|...++|++++.+|+.++..+|.|..+++.++.||...-. ..+....+ +..+..
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~-~s~l~~----- 288 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLK-MSDIGN----- 288 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHH-Hhcccc-----
Confidence 33444444778888999999999999999999999999999999763221 11111111 112222
Q ss_pred HHHHHHHHHHHHHHHh
Q 001357 820 RVAELENAVRVFSHLS 835 (1093)
Q Consensus 820 ~~~~l~~a~~~~~~l~ 835 (1093)
.+.....++.-|+.+.
T Consensus 289 ~~~~~~~~i~~fek~i 304 (906)
T PRK14720 289 NRKPVKDCIADFEKNI 304 (906)
T ss_pred CCccHHHHHHHHHHHe
Confidence 3445667777777653
No 106
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=4.2e-10 Score=109.95 Aligned_cols=211 Identities=16% Similarity=0.060 Sum_probs=170.0
Q ss_pred HHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhh
Q 001357 51 FKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPST 130 (1093)
Q Consensus 51 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~ 130 (1093)
+...+.++.+++.+..+.-....-+ ..+.-.++-.+..+.+..|+.. -|..+++......|.+..+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~---g~e~w~l~EqV~IAAld~~~~~-----------lAq~C~~~L~~~fp~S~RV 88 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGAL---GDEIWTLYEQVFIAALDTGRDD-----------LAQKCINQLRDRFPGSKRV 88 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhccc---CchHHHHHHHHHHHHHHhcchH-----------HHHHHHHHHHHhCCCChhH
Confidence 3445566666666665422111000 1122334444444445555555 7899999988777999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1093)
....|..+-..|++++|+++|+..+..+|.|...+.....+...+|+-.+|++.+...+...+.+ ..+|..++.+|...
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-QEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999888889999999999999999999999999 78899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1093)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1093)
|+|.+|.-+++.++-+.|.++..+..+|.+++..|-..++.-|..+|.++++++|.+..+++.+..
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 999999999999999999999999999999998888888999999999999999977777665433
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=3e-08 Score=111.18 Aligned_cols=547 Identities=14% Similarity=0.115 Sum_probs=261.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHH--------HH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIV--------LE---ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP 196 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~a--------l~---~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~ 196 (1093)
..+|-.+|..+....+++-|.-++-.+ +. .+|++ .-...|.+...+|-.++|+.+|.+.-+
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e--~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE--DEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc--hhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 346777777777777776666665432 11 12322 223344455666777777777766543
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN 276 (1093)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~ 276 (1093)
+-.+-..|...|.+++|.++-+.-=.+ .-...++..+..+...++ ...|+++|+++-... -.
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~D---i~~AleyyEK~~~ha----------fe 890 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRD---IEAALEYYEKAGVHA----------FE 890 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhcc---HHHHHHHHHhcCChH----------HH
Confidence 222445566666666666654432111 112345556665556666 677777776531100 00
Q ss_pred HHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC
Q 001357 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1093)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1093)
++....++..+++.|-+- ..+...|.+.|..+...|+.+.|+.+|..+-+ |+.+..+.+-+|
T Consensus 891 v~rmL~e~p~~~e~Yv~~-------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 891 VFRMLKEYPKQIEQYVRR-------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKCIQG 952 (1416)
T ss_pred HHHHHHhChHHHHHHHHh-------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEeecc
Confidence 011111111111111111 12235666667777777777777777766654 444445555555
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC-C-------------HHHHHHH
Q 001357 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKI------DPR-D-------------AQAFIDL 416 (1093)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~------~p~-~-------------~~~~~~l 416 (1093)
+.++|..+.++. .+..+.+.+|..|...|++.+|+.+|.++-.. ... + +.-....
T Consensus 953 k~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 953 KTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred CchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 555554443332 34445555555555555555555555544221 000 0 0001111
Q ss_pred HHHH-hcC-CHHHHHHHHHHH------------------HHHH-HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 417 GELL-ISS-DTGAALDAFKTA------------------RTLL-KKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDAL 475 (1093)
Q Consensus 417 a~~~-~~~-~~~~A~~~~~~a------------------~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 475 (1093)
+..| ..| ....|...|.++ +.+. .+.....++.++..-+..+....+|++|..++-.+.
T Consensus 1028 ArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1028 ARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2222 222 333333333221 2222 233444568999999999999999999998865554
Q ss_pred hcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhcc----CCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001357 476 GDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFEN----DGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551 (1093)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 551 (1093)
......... ..+....-+.+.+ .............++..+|.++.++|.|..|.+-|.++
T Consensus 1108 ~~~~AlqlC----------------~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1108 EFSGALQLC----------------KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHH----------------hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 321100000 0011111111111 11111112234568888999999999999999888774
Q ss_pred HHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHH
Q 001357 552 LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYAT 631 (1093)
Q Consensus 552 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~ 631 (1093)
-. .+.....+++.|+.++-.-+.. -....++| .++.-|++.-+|..--+.++.++..+.+ ..++
T Consensus 1172 Gd--------Kl~AMraLLKSGdt~KI~FFAn-----~sRqkEiY-ImAANyLQtlDWq~~pq~mK~I~tFYTK--gqaf 1235 (1416)
T KOG3617|consen 1172 GD--------KLSAMRALLKSGDTQKIRFFAN-----TSRQKEIY-IMAANYLQTLDWQDNPQTMKDIETFYTK--GQAF 1235 (1416)
T ss_pred hh--------HHHHHHHHHhcCCcceEEEEee-----ccccceee-eehhhhhhhcccccChHHHhhhHhhhhc--chhH
Confidence 32 2223344556666544221110 01112222 2333445555555555555555443332 2233
Q ss_pred HHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCC
Q 001357 632 LSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFV 711 (1093)
Q Consensus 632 ~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 711 (1093)
-.|++. |-..+.-+.- +-.+|++|...++.+. .++.+...-..+...|..+.+..
T Consensus 1236 d~LanF-Y~~cAqiEie----e~q~ydKa~gAl~eA~--------------kCl~ka~~k~~~~t~l~~Lq~~~------ 1290 (1416)
T KOG3617|consen 1236 DHLANF-YKSCAQIEIE----ELQTYDKAMGALEEAA--------------KCLLKAEQKNMSTTGLDALQEDL------ 1290 (1416)
T ss_pred HHHHHH-HHHHHHhhHH----HHhhhhHHhHHHHHHH--------------HHHHHHHhhcchHHHHHHHHHHH------
Confidence 446666 6555332110 1133333333322221 11111111111222222222211
Q ss_pred CchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001357 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1093)
Q Consensus 712 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 783 (1093)
....+.+..-.+|. .+....+...+.++.. |.-++ ..++..|...|....+|..|.+.+..+-...|+-
T Consensus 1291 a~vk~~l~~~q~~~--eD~~~~i~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~ 1363 (1416)
T KOG3617|consen 1291 AKVKVQLRKLQIMK--EDAADGIRQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNV 1363 (1416)
T ss_pred HHHHHHHHHHHHhh--hhHHHHHHHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCcc
Confidence 01111111112222 2455555555555554 12222 5677888899999999999999999999999964
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.30 E-value=2.3e-10 Score=113.46 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
.+...+-.....+|.+..+ +..+..+...|+-+.+..+..++...+|.+...+..+|...++.|+|..|+..+.++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3555555666778888888 888888899999888888888888888888888888888899999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001357 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1093)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1093)
.|++ ..+|..+|.+|.+.|+++.|...|.+++++.|+.+.+..++|..++-.|+ ++.|..++..+....+.+..+.
T Consensus 130 ~p~d-~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 130 APTD-WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred CCCC-hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCCchHHH
Confidence 9988 78888999999999999999999999999999999999999988888888 8888888888888877788888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 001357 272 NYLANHFFFTGQHFLVEQLTETA 294 (1093)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~a 294 (1093)
..|+.+....|++..|..+..+-
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHhhcCChHHHHhhcccc
Confidence 88888888888888877766543
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.30 E-value=1.1e-10 Score=117.63 Aligned_cols=124 Identities=13% Similarity=0.156 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH-HHhcC--HH
Q 001357 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVY-FAQGN--FA 731 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~-~~~g~--~~ 731 (1093)
++.++++..+++++..+|++..+|..+|.+|...|+++.|+..|++++...| +++.++.++|.++ ...|+ +.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-----ENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCCCCcH
Confidence 7788999999999999999999999999999999999999999999999998 8899999999975 67787 59
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcc
Q 001357 732 LAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1093)
Q Consensus 732 ~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 785 (1093)
+|...|+++++. ++.++.++..+|.+++..|++++|+.+|++++.+.|.+..
T Consensus 128 ~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 128 QTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999998 7778999999999999999999999999999999997643
No 110
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.2e-09 Score=106.85 Aligned_cols=209 Identities=18% Similarity=0.063 Sum_probs=171.0
Q ss_pred CCHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHH
Q 001357 423 SDTGAALDAFKTARTLLKKA-GEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (1093)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1093)
.+.++-++.....+...+.. -.+....++-.+..+....|+.+.|..+++....
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~------------------------- 80 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRD------------------------- 80 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHH-------------------------
Confidence 34455555555554444332 1112245556667777888999999999988776
Q ss_pred hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (1093)
Q Consensus 502 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 581 (1093)
..|....+.-..|..+...|++++|+++|..++..+|.+..++-+...+...+|..-+|++.
T Consensus 81 ------------------~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 81 ------------------RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred ------------------hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 33677888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHH
Q 001357 582 VNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1093)
Q Consensus 582 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1093)
+...+..++.+.++|..++.+|+..|+|.+|.-+++.++-..|. .+..+..++.+.|... .. .++.-|.
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~g-g~---------eN~~~ar 211 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQG-GA---------ENLELAR 211 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHh-hH---------HHHHHHH
Confidence 99999999999999999999999999999999999999988887 6666678899844444 22 6789999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHH
Q 001357 662 ELYTRVIVQHTSNLYAANGAGVVL 685 (1093)
Q Consensus 662 ~~~~~~l~~~p~~~~a~~~la~~~ 685 (1093)
++|.++++++|.+..+++++-.+.
T Consensus 212 kyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHhChHhHHHHHHHHHHH
Confidence 999999999999999988875543
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.29 E-value=1.6e-10 Score=128.83 Aligned_cols=218 Identities=17% Similarity=0.191 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHH
Q 001357 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1093)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~ 121 (1093)
....+|..+...|-...|+.|+++. ..+.....+|..+|... +|..+..+-+
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----------------emw~~vi~CY~~lg~~~-----------kaeei~~q~l 451 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----------------EMWDPVILCYLLLGQHG-----------KAEEINRQEL 451 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----------------HHHHHHHHHHHHhcccc-----------hHHHHHHHHh
Confidence 4466777788888888887777753 34555667777777544 6666666666
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 001357 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1093)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1093)
+ .|+++..|..+|.+....--|++|..+++.. +..|...+|...++.++|.++...++..+.++|-. ...|+
T Consensus 452 e-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-~~~wf 523 (777)
T KOG1128|consen 452 E-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-LGTWF 523 (777)
T ss_pred c-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccc-hhHHH
Confidence 6 5667777777777766666666666666554 23456666666677788888888888888888877 66778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1093)
.+|.|.++++++..|..+|.+++.++|++..+|.+++..|...+. -.+|...+.++++.+-.+..+|-+...+....
T Consensus 524 ~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~---k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 524 GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK---KKRAFRKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh---hHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 888888888888888888888888888888888888888887777 77777778888777766666676666666677
Q ss_pred CChHHHHHHHHHHHhcc
Q 001357 282 GQHFLVEQLTETALAVT 298 (1093)
Q Consensus 282 g~~~~A~~~~~~al~~~ 298 (1093)
|.+++|++.+.+.+...
T Consensus 601 ge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 601 GEFEDAIKAYHRLLDLR 617 (777)
T ss_pred ccHHHHHHHHHHHHHhh
Confidence 77777777766666443
No 112
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.29 E-value=1.1e-06 Score=101.21 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHH
Q 001357 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAM 734 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 734 (1093)
+.+-+|+-+++..+..+|.|...-..+..+|...|-+..|...|..+--..- ....+=+.+-..+...|++.-|.
T Consensus 453 ~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~I-----Q~DTlgh~~~~~~~t~g~~~~~s 527 (932)
T KOG2053|consen 453 TDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNI-----QTDTLGHLIFRRAETSGRSSFAS 527 (932)
T ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHh-----hhccchHHHHHHHHhcccchhHH
Confidence 6788899999999999999999888899999988999999988876633221 11111112223344568888888
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 001357 735 KMYQNCLRKFYYNTDAQILLYLARTHY 761 (1093)
Q Consensus 735 ~~~~~al~~~~~~~~~~~l~~la~~~~ 761 (1093)
..+...++.| .....++..+++.+|.
T Consensus 528 ~~~~~~lkfy-~~~~kE~~eyI~~AYr 553 (932)
T KOG2053|consen 528 NTFNEHLKFY-DSSLKETPEYIALAYR 553 (932)
T ss_pred HHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence 8888888876 3333444455555543
No 113
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.28 E-value=9.6e-11 Score=111.78 Aligned_cols=119 Identities=19% Similarity=0.198 Sum_probs=109.8
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001357 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS 194 (1093)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1093)
..|.+++..+|.+....+.+|.+++..|++++|...|+.++..+|.++.++..+|.+++..|++++|+.+|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
+ ...++.+|.++...|+++.|+..|+++++++|++....
T Consensus 84 ~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 D-PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred C-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 8 77889999999999999999999999999999876643
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.26 E-value=2.2e-09 Score=119.97 Aligned_cols=223 Identities=19% Similarity=0.180 Sum_probs=196.1
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001357 338 PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG 417 (1093)
Q Consensus 338 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la 417 (1093)
-|........++.++...|-...|+..|++. ..|.....||...|+..+|..+..+-++ .|+++..|..+|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 4556667788999999999999999999875 4566778899999999999999999888 788899999999
Q ss_pred HHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001357 418 ELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (1093)
Q Consensus 418 ~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 496 (1093)
.+. ...-|++|.++.+.. +..+...+|......++|.++..+|+..+.
T Consensus 465 Dv~~d~s~yEkawElsn~~-----------sarA~r~~~~~~~~~~~fs~~~~hle~sl~-------------------- 513 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYI-----------SARAQRSLALLILSNKDFSEADKHLERSLE-------------------- 513 (777)
T ss_pred hhccChHHHHHHHHHhhhh-----------hHHHHHhhccccccchhHHHHHHHHHHHhh--------------------
Confidence 988 655566666554432 234556667777778999999999999998
Q ss_pred hhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHH
Q 001357 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQ 576 (1093)
Q Consensus 497 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 576 (1093)
.+|....+||.+|.+..+.+++..|...|...+...|++..+|++++..|...++..
T Consensus 514 -----------------------~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ 570 (777)
T KOG1128|consen 514 -----------------------INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKK 570 (777)
T ss_pred -----------------------cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhH
Confidence 567889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcC
Q 001357 577 LSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDAT 623 (1093)
Q Consensus 577 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 623 (1093)
+|...++++++.+-.+..+|-|...+..+.|.+++|++.+.+.+...
T Consensus 571 ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 571 RAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999988753
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.24 E-value=1.2e-09 Score=108.33 Aligned_cols=180 Identities=19% Similarity=0.212 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1093)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (1093)
..+...+-.....+|.+..+ ..++..++..|+-+.++.+..++...+|.+ ..+...+|...++.|++..|+..|.++.
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-RELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc-HHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 33666677777889999999 999999999999999999999999889988 6667779999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCc
Q 001357 225 QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK 304 (1093)
Q Consensus 225 ~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 304 (1093)
.+.|++..+|..+|.+|.+.|+ ++.|...|.+++++.|..+.+.++++..++-.|+++.|..++..+.... +.+
T Consensus 128 ~l~p~d~~~~~~lgaaldq~Gr---~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad 201 (257)
T COG5010 128 RLAPTDWEAWNLLGAALDQLGR---FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AAD 201 (257)
T ss_pred ccCCCChhhhhHHHHHHHHccC---hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCc
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999888554 456
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001357 305 SHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1093)
Q Consensus 305 ~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1093)
..+..+++.+....|++..|.....+-+
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 6888899999999999998877665443
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.24 E-value=7.1e-10 Score=131.57 Aligned_cols=155 Identities=14% Similarity=-0.007 Sum_probs=136.4
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
.++..+....+..|.++.+++.+|.+....|.+++|...++.++...|++..++..++.++.+.+++++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 34444444556678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHH
Q 001357 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMA 270 (1093)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~ 270 (1093)
.|++ ...++.+|.++.++|++++|..+|++++..+|++..+++.+|.++...|+ .++|...|++++.....-...
T Consensus 150 ~p~~-~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 150 GSSS-AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred CCCC-HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCcchHH
Confidence 9999 77889999999999999999999999999899999999999999999998 999999999998886554433
No 117
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=1.2e-05 Score=91.12 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=53.7
Q ss_pred cCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHH
Q 001357 622 ATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQV 701 (1093)
Q Consensus 622 ~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~ 701 (1093)
+.+..|+..+..-++. |... .+|++|..++-.+-+. .-+.-++...+..-..++-+.+
T Consensus 1074 Ld~~sDp~ll~RcadF-F~~~------------~qyekAV~lL~~ar~~---------~~AlqlC~~~nv~vtee~aE~m 1131 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADF-FENN------------QQYEKAVNLLCLAREF---------SGALQLCKNRNVRVTEEFAELM 1131 (1416)
T ss_pred cCCCCCHHHHHHHHHH-HHhH------------HHHHHHHHHHHHHHHH---------HHHHHHHhcCCCchhHHHHHhc
Confidence 4455666666666666 6666 7777777766544321 1111222222332222222222
Q ss_pred HHHh-cCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 702 QEAA-SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 702 ~~~~-p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
--.. ...+......++..+|.+..++|.|..|-+-|.+|=.+
T Consensus 1132 Tp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1132 TPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred CcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH
Confidence 1000 00011123567788899999999999998888777544
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.17 E-value=6.1e-10 Score=106.21 Aligned_cols=119 Identities=21% Similarity=0.304 Sum_probs=109.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 149 SAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 149 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
..|++++..+|++..+.+.+|.+++..|++.+|+..|++++..+|.+ ..+++.+|.++..+|+++.|...|.+++..+|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN-SRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999999999999999999999999999998 77889999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHH
Q 001357 229 ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMAL 271 (1093)
Q Consensus 229 ~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~ 271 (1093)
.++..++.+|.++...|+ +.+|+..|+++++.+|.+....
T Consensus 83 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGE---PESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccccchHH
Confidence 999999999999999998 9999999999999999877543
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.15 E-value=6.6e-10 Score=103.11 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=99.8
Q ss_pred HhcC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Q 001357 121 SRID-MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (1093)
Q Consensus 121 ~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~ 199 (1093)
..++ ++.-...+.+|..++..|++++|..+|+.+...+|.++..|+++|.++..+|+|.+|+..|.+++.++|++ +.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~~ 105 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQA 105 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chH
Confidence 3455 66778899999999999999999999999999999999999999999999999999999999999999998 788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 200 RLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
++.+|.|++.+|+.+.|+..|+.++...-
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998763
No 120
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.15 E-value=6e-06 Score=95.23 Aligned_cols=470 Identities=13% Similarity=0.022 Sum_probs=257.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.++|.+|++.+.+.++..|+.+.+....|.++++.|++++|..+++..-...+++...+-.+-.+|..+|++++|..+|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 45677999999999999999999999999999999999999988888777778888888889999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hhH------HhHHHHHHHHHH
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEA------AGIRKGMEKMQR 259 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~------~~~~~Al~~~~~ 259 (1093)
+++..+|. ....+.+=.+|.+-+.|.+-.++--++.+..|.++..+.....+.+.. ... --..-|...+++
T Consensus 102 ~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 102 RANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred HHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 99999998 456677788888888887777666666667888776544444433332 110 012234445555
Q ss_pred HHHhC-CCcHH-HHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 001357 260 AFEIY-PYCAM-ALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK 337 (1093)
Q Consensus 260 al~~~-p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 337 (1093)
.+... +-... =....-.++...|.+++|..++..-+... ..+.....-......+...+++.+-.++..+++...
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~-- 256 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG-- 256 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--
Confidence 55544 21111 11222334556677777777774333211 112222333344556666777777777777776632
Q ss_pred CCCchhhHHH----H---------HHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 338 PHEFIFPYYG----L---------GQVQLKLGDFRSALTNFEKVLEIYPDNCE-TLKALGHIYVQLGQIEKAQELLRKAA 403 (1093)
Q Consensus 338 ~~~~~~~~~~----l---------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~l~~~l 403 (1093)
++....+.. + +..+...+..+..++...+.+.....++. ++..+-.-+...|+.+++...|-+-+
T Consensus 257 -~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kf 335 (932)
T KOG2053|consen 257 -NDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKF 335 (932)
T ss_pred -CcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHh
Confidence 222111111 1 11111122233333333333322111221 22222222235567777666665444
Q ss_pred HhCCCC------------HHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH-----
Q 001357 404 KIDPRD------------AQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEF----- 464 (1093)
Q Consensus 404 ~~~p~~------------~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~----- 464 (1093)
..-|-. +.....+...+ ..++...+...+.+.+ ..-.+....|.|
T Consensus 336 g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~----------------c~l~~~rl~G~~~~l~a 399 (932)
T KOG2053|consen 336 GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHL----------------CVLLLLRLLGLYEKLPA 399 (932)
T ss_pred CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHH----------------HHHHHHHHhhccccCCh
Confidence 322211 11111111111 1111111111111111 011111112211
Q ss_pred HHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCch---HHHHHHHHHHHHhcCC-
Q 001357 465 ESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNK---VTVLFNLARLLEQIHD- 540 (1093)
Q Consensus 465 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~la~~~~~~g~- 540 (1093)
+.-..++.+..... . ..+++...+ ...+..+.+ ..+...+..++.+.++
T Consensus 400 d~i~a~~~kl~~~y----------------------e-~gls~~K~l----l~TE~~~g~~~llLav~~Lid~~rktnd~ 452 (932)
T KOG2053|consen 400 DSILAYVRKLKLTY----------------------E-KGLSLSKDL----LPTEYSFGDELLLLAVNHLIDLWRKTNDL 452 (932)
T ss_pred HHHHHHHHHHHHHH----------------------h-ccccccccc----cccccccHHHHHHHHHHHHHHHHHhcCcH
Confidence 11122221211100 0 000000000 001111111 1122334455666665
Q ss_pred --hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHH
Q 001357 541 --TVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRA 618 (1093)
Q Consensus 541 --~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1093)
+-+|+-+++..+..+|.++.+...+..+|...|-+..|...|...--.+-..-.+-+.+-..+...|++..+...+..
T Consensus 453 ~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~ 532 (932)
T KOG2053|consen 453 TDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNE 532 (932)
T ss_pred HHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHH
Confidence 457888999999999999999999999999999999999988765322222222223344445566788888888887
Q ss_pred hhhcCCC
Q 001357 619 ASDATDG 625 (1093)
Q Consensus 619 ~l~~~~~ 625 (1093)
.+....+
T Consensus 533 ~lkfy~~ 539 (932)
T KOG2053|consen 533 HLKFYDS 539 (932)
T ss_pred HHHHHhh
Confidence 7775544
No 121
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=4.9e-10 Score=113.17 Aligned_cols=116 Identities=24% Similarity=0.379 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1093)
.+-..|.-++..++|.+|+..|.++|.++|.|+..|-.+|.+|.++|.|+.|++.++.++.++|.. ..+|..+|.+|+.
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~ 161 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHc
Confidence 344567777777788888888888888888888888888888888888888888888888888877 6677778888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 210 LGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
+|++.+|+..|+++|+++|++...+..|..+-...+.
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 8888888888888888888877766666665555544
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.11 E-value=4.4e-09 Score=124.94 Aligned_cols=175 Identities=11% Similarity=0.052 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHH
Q 001357 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1093)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~ 121 (1093)
+.-++-...-+.|.+..+..-|-+++.. ...|+ ....++..||.+...+|..+ +|..++..++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~La~i~~~~g~~~-----------ea~~~l~~~~ 113 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDY--VRRYP----HTELFQVLVARALEAAHRSD-----------EGLAVWRGIH 113 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHH--HHhcc----ccHHHHHHHHHHHHHcCCcH-----------HHHHHHHHHH
Confidence 3444444455555555555544444321 01122 33677888888888888877 9999999999
Q ss_pred hcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 001357 122 RIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1093)
Q Consensus 122 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1093)
.+.|++..+++.++.++.+.+++++|+..+++++..+|+++.+++.+|.++...|+|++|+.+|++++..+|+. +.+++
T Consensus 114 ~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~~ 192 (694)
T PRK15179 114 QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGYV 192 (694)
T ss_pred hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988988 88899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
.+|.++...|+.++|...|++++.....-...+
T Consensus 193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 193 GWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 999999999999999999999999876655443
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.10 E-value=7e-09 Score=111.58 Aligned_cols=153 Identities=19% Similarity=0.250 Sum_probs=132.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 159 RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 159 p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
|.-..++++.|..++..|+++.|+..+..++...|++ +.++...+.++...|+..+|.+.+++++.++|+....++.+|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 7788889999999999999999999999999999988 777888889999999999999999999999998888889999
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhc
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 318 (1093)
..++..|+ +.+|+..++..+..+|+++..|..|+..|...|+..++ ....+..|...
T Consensus 382 ~all~~g~---~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a--------------------~~A~AE~~~~~ 438 (484)
T COG4783 382 QALLKGGK---PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA--------------------LLARAEGYALA 438 (484)
T ss_pred HHHHhcCC---hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH--------------------HHHHHHHHHhC
Confidence 99999988 78999999999999999999999999999988887544 34456677788
Q ss_pred CCHHHHHHHHHHHHHhc
Q 001357 319 GDYEKAGLYYMASVKEI 335 (1093)
Q Consensus 319 g~~~~A~~~~~~al~~~ 335 (1093)
|++++|+..+..+.+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999998888754
No 124
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.08 E-value=4.2e-08 Score=102.30 Aligned_cols=204 Identities=12% Similarity=0.072 Sum_probs=129.8
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHH
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIR 200 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~ 200 (1093)
..+..++..|..++..|+|++|+..|+.++...|..+.+ .+.+|.++++.++|.+|+..|++.++.+|++ .+.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 356778889999999999999999999999999988654 4889999999999999999999999999887 35567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
+.+|.++..++.- .|.....+++. ..+.....+|+..|+..+...|++..+-.
T Consensus 110 Y~~g~~~~~~~~~-----~~~~~~~~~~~--------------~rD~~~~~~A~~~~~~li~~yP~S~ya~~-------- 162 (243)
T PRK10866 110 YMRGLTNMALDDS-----ALQGFFGVDRS--------------DRDPQHARAAFRDFSKLVRGYPNSQYTTD-------- 162 (243)
T ss_pred HHHHHhhhhcchh-----hhhhccCCCcc--------------ccCHHHHHHHHHHHHHHHHHCcCChhHHH--------
Confidence 7777776554311 11111111110 01111244555566666666665542211
Q ss_pred cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHH
Q 001357 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1093)
|...+..+. ...+.--+.+|..|.+.|.|..|+.-++.++...+..+....+++.++.+|...|..++
T Consensus 163 ------A~~rl~~l~------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 163 ------ATKRLVFLK------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred ------HHHHHHHHH------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 111000000 00112334566777777777777777777777777667777777777777777777777
Q ss_pred HHHHHHHH
Q 001357 361 ALTNFEKV 368 (1093)
Q Consensus 361 A~~~~~~~ 368 (1093)
|..+...+
T Consensus 231 a~~~~~~l 238 (243)
T PRK10866 231 ADKVAKII 238 (243)
T ss_pred HHHHHHHH
Confidence 76665443
No 125
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.08 E-value=1.3e-09 Score=116.32 Aligned_cols=117 Identities=20% Similarity=0.192 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG--DFRSALTNFEKVLEIYPDNCETLKALG 383 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la 383 (1093)
+.......+|...++++.|.+.+..+.+ ...+.....+..+.+.+..| .+.+|.-+|+.+....+.++.+++.++
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3444444455555555555555544433 22333333333333333333 355555555554444444555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCH
Q 001357 384 HIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDT 425 (1093)
Q Consensus 384 ~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~ 425 (1093)
.+++.+|++++|...+.+++..+|.++.++.+++.+. ..|+.
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 5555555555555555555555555555555555544 44444
No 126
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=2.1e-09 Score=114.76 Aligned_cols=260 Identities=15% Similarity=0.113 Sum_probs=174.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001357 135 GQLLLAKGEVEQASSAFKIVLEADRD-NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1093)
...++..|+|..++..++ ....+|. .......+.+++..+|++...+.-+... ..|.. .....++..+...++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l--~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSPEL--QAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSCCC--HHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CChhH--HHHHHHHHHHhCccch
Confidence 455677888888887666 2223332 3456677788888888887665444321 12333 2334445544444556
Q ss_pred HHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 214 GKARQAFQRALQLDP--ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1093)
Q Consensus 214 ~~A~~~~~~al~~~p--~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1093)
+.++..++..+.... .++...+..|.++...|+ +++|+..+.+. .+.........++...++++.|.+.+
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~---~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l 154 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGD---YEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKEL 154 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCH---HHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCC---HHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666655443221 244555666677777777 78888777643 46677777788888899999998888
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 292 ETALAVTNHGPTKSHSYYNLARSYHSKG--DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1093)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1093)
+.+.+.. .+..-+....+.+.+..| .+.+|..+|+.... ..+..+..+.+++.+++..|+|++|...+..++
T Consensus 155 ~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 155 KNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD---KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh---ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8876543 222233333333444444 69999999999876 445667888999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHH
Q 001357 370 EIYPDNCETLKALGHIYVQLGQI-EKAQELLRKAAKIDPRDAQAF 413 (1093)
Q Consensus 370 ~~~p~~~~~~~~la~~~~~~g~~-~~A~~~l~~~l~~~p~~~~~~ 413 (1093)
..+|+++.++.+++.+....|+. +.+.+++.++...+|.++.+.
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999999988 667778888888899876553
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.05 E-value=6.1e-08 Score=104.49 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=111.2
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHH
Q 001357 193 PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALN 272 (1093)
Q Consensus 193 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1093)
|.. ...++..+..++..|.++.|+..+...+...|+|+..+...+.+++..++ ..+|++.+++++.++|..+....
T Consensus 303 ~~~-~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk---~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 303 RGG-LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK---AKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred ccc-hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCccHHHH
Confidence 444 55677777777777777777777777777777777777777777777777 77777777777777777777777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 001357 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1093)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1093)
.+|..|+..|++.+|+..++..+.. .|.++..|..++.+|..+|+..+|.. ..+..|
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~---~p~dp~~w~~LAqay~~~g~~~~a~~--------------------A~AE~~ 435 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFN---DPEDPNGWDLLAQAYAELGNRAEALL--------------------ARAEGY 435 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhc---CCCCchHHHHHHHHHHHhCchHHHHH--------------------HHHHHH
Confidence 7777777777777777777777643 35666777777777777776655533 334455
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q 001357 353 LKLGDFRSALTNFEKVLEIY 372 (1093)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~ 372 (1093)
...|+++.|+..+..+.+..
T Consensus 436 ~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 436 ALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HhCCCHHHHHHHHHHHHHhc
Confidence 66777777777777776654
No 128
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.04 E-value=7.5e-08 Score=100.41 Aligned_cols=201 Identities=14% Similarity=0.164 Sum_probs=143.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHH
Q 001357 160 DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EAL 234 (1093)
Q Consensus 160 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~ 234 (1093)
..+..++..|..++..|+|++|+..|++++...|..+ ..+.+.+|.++++.++++.|+..|++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3577788999999999999999999999999999882 22358899999999999999999999999999865 446
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 001357 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARS 314 (1093)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~ 314 (1093)
+.+|.++...+. ..+.....+++.+. .......|+..++..+...+.++-..++...+..+
T Consensus 110 Y~~g~~~~~~~~--------~~~~~~~~~~~~~r-----------D~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 110 YMRGLTNMALDD--------SALQGFFGVDRSDR-----------DPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL 170 (243)
T ss_pred HHHHHhhhhcch--------hhhhhccCCCcccc-----------CHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 666665544432 11111111211110 01112356777788887766554444444333322
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCC
Q 001357 315 YHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKALGHIYVQLGQ 391 (1093)
Q Consensus 315 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~ 391 (1093)
... + ..--+.+|..|.+.|.|..|+.-++.++...|+. .+++..++.+|...|.
T Consensus 171 ~~~--------------l---------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 171 KDR--------------L---------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred HHH--------------H---------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 211 1 1224578899999999999999999999998875 5799999999999999
Q ss_pred HHHHHHHHHHH
Q 001357 392 IEKAQELLRKA 402 (1093)
Q Consensus 392 ~~~A~~~l~~~ 402 (1093)
.++|..+...+
T Consensus 228 ~~~a~~~~~~l 238 (243)
T PRK10866 228 NAQADKVAKII 238 (243)
T ss_pred hHHHHHHHHHH
Confidence 99998877654
No 129
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.03 E-value=2.9e-08 Score=101.19 Aligned_cols=190 Identities=19% Similarity=0.245 Sum_probs=121.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1093)
.+..++..|..++..|+|.+|+..|+.++...|.+ +.+.+.+|.+++..|+|..|+..|++.+...|++ .+.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 35677788888888888888888888888877765 5677888888888888888888888888888876 244566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1093)
.+|.+++.+..- .+ ....+.....+|+..|+..+...|+++.+-.
T Consensus 84 ~~g~~~~~~~~~---------~~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------- 128 (203)
T PF13525_consen 84 MLGLSYYKQIPG---------IL-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------- 128 (203)
T ss_dssp HHHHHHHHHHHH---------HH------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHH---------
T ss_pred HHHHHHHHhCcc---------ch-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHH---------
Confidence 666666544110 00 0011222367777888888888877653321
Q ss_pred CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHH
Q 001357 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1093)
Q Consensus 282 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1093)
|...+..+.. ..+.--+.+|..|+..|.|..|+..|+.+++..+..+....++..++.+|...|....|
T Consensus 129 -----A~~~l~~l~~------~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 129 -----AKKRLAELRN------RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -----HHHHHHHHHH------HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred -----HHHHHHHHHH------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 1111111110 11244556788888888888888888888887777777777888888888888887744
Q ss_pred H
Q 001357 362 L 362 (1093)
Q Consensus 362 ~ 362 (1093)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 130
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=3.6e-09 Score=106.99 Aligned_cols=163 Identities=17% Similarity=0.150 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVG--KGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDS 181 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~--~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~A 181 (1093)
.-.+-|+++++..+.+.+.+...... +..++....+ .-.-...|. -..-+-.-|.-+++.++|.+|
T Consensus 29 esleva~qc~e~~f~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~e~~~~AE~LK~eGN~~m~~~~Y~eA 100 (304)
T KOG0553|consen 29 ESLEVAIQCLEAAFGFRRDDVDRAEGTTLLDSFESAER--------HPVEILTPEEDKALAESLKNEGNKLMKNKDYQEA 100 (304)
T ss_pred hHHHHhHHHHHHHhCcchhhccccccccHHHHHHHhcc--------CcccccChHhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34557888888888877655432222 1111111111 000011110 134466778888999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001357 182 LEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1093)
Q Consensus 182 l~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1093)
+..|.++|.++|.+ +.+|.+.+.+|.++|.++.|++..+.++.++|.+..+|..||.+|+.+|+ +.+|+..|++++
T Consensus 101 v~kY~~AI~l~P~n-AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk---~~~A~~aykKaL 176 (304)
T KOG0553|consen 101 VDKYTEAIELDPTN-AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK---YEEAIEAYKKAL 176 (304)
T ss_pred HHHHHHHHhcCCCc-chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc---HHHHHHHHHhhh
Confidence 99999999999999 78899999999999999999999999999999999999999999999999 999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcC
Q 001357 262 EIYPYCAMALNYLANHFFFTG 282 (1093)
Q Consensus 262 ~~~p~~~~~~~~la~~~~~~g 282 (1093)
.++|++......|..+-...+
T Consensus 177 eldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 177 ELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred ccCCCcHHHHHHHHHHHHHhc
Confidence 999999977666554444333
No 131
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=3.3e-07 Score=97.67 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=114.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-----CCHHHHHHHH
Q 001357 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-----VPIEVLNNIG 455 (1093)
Q Consensus 382 la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~la 455 (1093)
....|.+..+...+..-.+.++.+..+.+.+.+..+..+ ..|++.+|.+.+... .+....+.. ....+++++|
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcc
Confidence 334445556666666666667766677777777778777 888888888776532 121111211 1235679999
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-cchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHH
Q 001357 456 VIHFEKGEFESAHQSFKDALG-DGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (1093)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~ 534 (1093)
+++++.|.|.-+..+|.+++. .|..... + +.....-.-.......++|+.|..
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~--g------------------------~~~~~~~tls~nks~eilYNcG~~ 344 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRN--G------------------------LKPAKTFTLSQNKSMEILYNCGLL 344 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhc--c------------------------CCCCcceehhcccchhhHHhhhHH
Confidence 999999999999999999995 3321110 0 000000000233467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc
Q 001357 535 LEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR 572 (1093)
Q Consensus 535 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 572 (1093)
|...|++-.|.+.|.++...+..++..|++++.+++..
T Consensus 345 ~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 345 YLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887643
No 132
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.00 E-value=7.3e-09 Score=115.17 Aligned_cols=113 Identities=16% Similarity=0.248 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1093)
+...|..++..|+|++|+.+|.+++..+|+++.+++.+|.++...|++++|+..+++++.++|.+ ..+++.+|.+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 56778999999999999999999999999999999999999999999999999999999999998 77789999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001357 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1093)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1093)
|++++|+..|++++.++|++..+...++.+....
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998888877765444
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.97 E-value=1.2e-07 Score=96.58 Aligned_cols=187 Identities=20% Similarity=0.258 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH---HHHH
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV---EALV 235 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~ 235 (1093)
.+..++..|..++..|+|.+|+..|+.++...|.. .+.+.+.+|.+++..|++..|+..|++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999999876 467789999999999999999999999999999865 4566
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHH
Q 001357 236 ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSY 315 (1093)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 315 (1093)
.+|.++..... ..+ ......+...+|...++..+...+.++-...+...+..+-
T Consensus 84 ~~g~~~~~~~~-----~~~---------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~ 137 (203)
T PF13525_consen 84 MLGLSYYKQIP-----GIL---------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR 137 (203)
T ss_dssp HHHHHHHHHHH-----HHH----------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-----cch---------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH
Confidence 67766655422 111 0111223345678888888877766654444433332221
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCH
Q 001357 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC---ETLKALGHIYVQLGQI 392 (1093)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~ 392 (1093)
..+ ..--+.+|..|.+.|.+..|+..++.+++..|+.. .++..++.+|..+|..
T Consensus 138 --------------~~l---------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 138 --------------NRL---------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp --------------HHH---------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-H
T ss_pred --------------HHH---------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCCh
Confidence 111 12356689999999999999999999999999865 6899999999999998
Q ss_pred HHHH
Q 001357 393 EKAQ 396 (1093)
Q Consensus 393 ~~A~ 396 (1093)
..|.
T Consensus 195 ~~a~ 198 (203)
T PF13525_consen 195 QAAD 198 (203)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8554
No 134
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.95 E-value=7.2e-05 Score=81.64 Aligned_cols=435 Identities=12% Similarity=0.041 Sum_probs=255.9
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Q 001357 118 NKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG 197 (1093)
Q Consensus 118 ~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~ 197 (1093)
++-++.+|.|..+|+.+..-+-.+ -+++....|++.+...|..+.+|...+...+..++|+.-..+|.++|..--+. .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnl-D 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNL-D 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH-h
Confidence 566788999999999998877666 99999999999999999999999999999999999999999999998765443 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHH----HHHHHHh---hCCCcHHHHHHHHHHHHHhh---h---HHhHHHHHHHHHHHHHhC
Q 001357 198 AIRLGIGLCRYKLGQLGKARQ----AFQRALQ---LDPENVEALVALAVMDLQAN---E---AAGIRKGMEKMQRAFEIY 264 (1093)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~----~~~~al~---~~p~~~~a~~~la~~~~~~~---~---~~~~~~Al~~~~~al~~~ 264 (1093)
-+.+.+-.+.-..|....++. +|+-++. .++.....|...+..+..-. . ..+++.-...|++++..-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 222334444444455444333 3333333 35556666666555443221 1 112455555666666543
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC----CCC-
Q 001357 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN----KPH- 339 (1093)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~~~- 339 (1093)
-.+..-+. ++|..-+.-.+.+. ..-.+-.....|-.|...++....... ..|
T Consensus 168 m~nlEkLW---------~DY~~fE~~IN~~t--------------arK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~ 224 (656)
T KOG1914|consen 168 MHNLEKLW---------KDYEAFEQEINIIT--------------ARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA 224 (656)
T ss_pred cccHHHHH---------HHHHHHHHHHHHHH--------------HHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC
Confidence 22221111 11111111111111 000111122234455555544433110 001
Q ss_pred ---C-c------hhhHHHHHHHHHHcC------C--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC----------
Q 001357 340 ---E-F------IFPYYGLGQVQLKLG------D--FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQ---------- 391 (1093)
Q Consensus 340 ---~-~------~~~~~~la~~~~~~g------~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---------- 391 (1093)
. . +..|.++...-...+ . -..-.-.+++++..-+.++++|+..+..+...++
T Consensus 225 vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~ 304 (656)
T KOG1914|consen 225 VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPD 304 (656)
T ss_pred CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhccccc
Confidence 0 0 111222222111111 1 1122334566666666777777766655555544
Q ss_pred ----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-hcC---CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 001357 392 ----IEKAQELLRKAAKID-PRDAQAFIDLGELL-ISS---DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKG 462 (1093)
Q Consensus 392 ----~~~A~~~l~~~l~~~-p~~~~~~~~la~~~-~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g 462 (1093)
.+++..+|++++..- ..+...++.++..- ..- ..+.....+.+++.+.... ..-++.++...-.+..
T Consensus 305 a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~----~tLv~~~~mn~irR~e 380 (656)
T KOG1914|consen 305 AKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDID----LTLVYCQYMNFIRRAE 380 (656)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccC----CceehhHHHHHHHHhh
Confidence 677888888877543 33444455555433 222 2555566666666553321 2344555555556666
Q ss_pred CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHH-HHhcCCh
Q 001357 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL-LEQIHDT 541 (1093)
Q Consensus 463 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~ 541 (1093)
-...|..+|.++-+.. ..+. .++..-|.+ |...++.
T Consensus 381 GlkaaR~iF~kaR~~~-----------------------------------------r~~h--hVfVa~A~mEy~cskD~ 417 (656)
T KOG1914|consen 381 GLKAARKIFKKAREDK-----------------------------------------RTRH--HVFVAAALMEYYCSKDK 417 (656)
T ss_pred hHHHHHHHHHHHhhcc-----------------------------------------CCcc--hhhHHHHHHHHHhcCCh
Confidence 7788888888887632 1111 233322322 5566899
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cC-CChhHHHHhhhhhhcccchHHHHHHHHH
Q 001357 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV--NG-KYPNALSMLGDLELKNDDWVKAKETFRA 618 (1093)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1093)
.-|..+|+..++.+++.+..-+.....+...++-..+..+|++++.. .| ....+|..+......-|+...+++.-++
T Consensus 418 ~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 418 ETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99999999999999998888888888888899999999999999887 22 2345777777777777887777776666
Q ss_pred hhhcCC
Q 001357 619 ASDATD 624 (1093)
Q Consensus 619 ~l~~~~ 624 (1093)
.....|
T Consensus 498 ~~~af~ 503 (656)
T KOG1914|consen 498 RFTAFP 503 (656)
T ss_pred HHHhcc
Confidence 554444
No 135
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.95 E-value=2.7e-08 Score=92.49 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=74.2
Q ss_pred HhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 156 EAD-RDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 156 ~~~-p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
... ++....++.+|..++..|++++|..+|+-+...+|.+ ...|+++|.|+..+|++.+|+.+|.+++.++|+++.++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 344 5556667777777777777777777777777777777 56677777777777777777777777777777777777
Q ss_pred HHHHHHHHHhhhHHhHHHHHHHHHHHHHhC
Q 001357 235 VALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1093)
Q Consensus 235 ~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1093)
+.+|.+++..|+ ...|...|+.++...
T Consensus 107 ~~ag~c~L~lG~---~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACDN---VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHHh
Confidence 777777777776 677777777666654
No 136
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=4e-05 Score=85.59 Aligned_cols=330 Identities=12% Similarity=0.111 Sum_probs=165.2
Q ss_pred hhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------hCCCC
Q 001357 102 KQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE--------------------ADRDN 161 (1093)
Q Consensus 102 ~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--------------------~~p~~ 161 (1093)
....-+++|..|..+++. +...|.-...|..++.+.+..|++--|..+|..+-. ...+-
T Consensus 452 gaaid~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdg 530 (1636)
T KOG3616|consen 452 GAAIDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDG 530 (1636)
T ss_pred ccccccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCC
Confidence 334457889999887765 567788888899999999988888777777754311 12223
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 001357 162 VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMD 241 (1093)
Q Consensus 162 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 241 (1093)
...|-..|.+.....+|.+|..+|-. .+.. .. ..-+|..+.++++|+.+-+- .-.|.........-..+
T Consensus 531 t~fykvra~lail~kkfk~ae~ifle---qn~t--e~----aigmy~~lhkwde~i~lae~--~~~p~~eklk~sy~q~l 599 (1636)
T KOG3616|consen 531 TDFYKVRAMLAILEKKFKEAEMIFLE---QNAT--EE----AIGMYQELHKWDEAIALAEA--KGHPALEKLKRSYLQAL 599 (1636)
T ss_pred chHHHHHHHHHHHHhhhhHHHHHHHh---cccH--HH----HHHHHHHHHhHHHHHHHHHh--cCChHHHHHHHHHHHHH
Confidence 34555566666666677777665532 1111 11 11234555666666654332 11222111111111222
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC---------CCCchHHHHHHH
Q 001357 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH---------GPTKSHSYYNLA 312 (1093)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~la 312 (1093)
+..|. -.+|- ++...+... .....+|...|....|......-...... .-...+.|-.-|
T Consensus 600 ~dt~q---d~ka~-------elk~sdgd~-laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkag 668 (1636)
T KOG3616|consen 600 MDTGQ---DEKAA-------ELKESDGDG-LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAG 668 (1636)
T ss_pred HhcCc---hhhhh-------hhccccCcc-HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhh
Confidence 22222 11111 111001000 01123344444444433322110000000 001123444455
Q ss_pred HHHHhcCCHHHHHHHHHHHH------H--hcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 001357 313 RSYHSKGDYEKAGLYYMASV------K--EINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGH 384 (1093)
Q Consensus 313 ~~~~~~g~~~~A~~~~~~al------~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 384 (1093)
.+|.+..++++|+++|.+.- + .+.-+...+..--..|..+...|+++.|+..|-.+- .+.....
T Consensus 669 dlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~--------~~~kaie 740 (1636)
T KOG3616|consen 669 DLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--------CLIKAIE 740 (1636)
T ss_pred hHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------hHHHHHH
Confidence 66666666777777765432 1 111112222233446777777888888887775542 1222233
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 001357 385 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (1093)
Q Consensus 385 ~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~ 463 (1093)
+......+.+|+.+++.+-... .....|-.++.-| ..|+++-|...|.++- .......+|-+.|+
T Consensus 741 aai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~-------------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD-------------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc-------------hhHHHHHHHhcccc
Confidence 4445567777777776554322 1223445566667 7777777777665432 22334556777788
Q ss_pred HHHHHHHHHHHHh
Q 001357 464 FESAHQSFKDALG 476 (1093)
Q Consensus 464 ~~~A~~~~~~al~ 476 (1093)
+..|..+-.+...
T Consensus 807 w~da~kla~e~~~ 819 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG 819 (1636)
T ss_pred HHHHHHHHHHhcC
Confidence 8887777666543
No 137
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=0.00014 Score=78.24 Aligned_cols=202 Identities=11% Similarity=0.057 Sum_probs=137.7
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCC-C--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchh
Q 001357 421 ISSDTGAALDAFKTARTLLKKAGEEV-P--------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTY 491 (1093)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~~-~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 491 (1093)
..|-++++.++-++++....+..... . ..++-++..+-.-.|++.+|+.....+...+.....
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~-------- 358 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPT-------- 358 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCc--------
Confidence 34667778887777777655443222 1 245566788888899999999998888774421100
Q ss_pred hhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q 001357 492 VIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---YVDAYLRLAAI 568 (1093)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~ 568 (1093)
.+-.....+.+.+.+|......|.++.|...|..+.+.... .+.+-.+++.+
T Consensus 359 -------------------------~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 359 -------------------------PLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred -------------------------hHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 00011235667788888888899999999999999875443 24456778888
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCCh----------hHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChH-----HHHH
Q 001357 569 AKARNNLQLSIELVNEALKVNGKYP----------NALSMLGDLELKNDDWVKAKETFRAASDATDGKDSY-----ATLS 633 (1093)
Q Consensus 569 ~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~-----~~~~ 633 (1093)
|...|+-+.-.+.++ .++|.+. .+++..|...+.++++.+|...+.+.++.....|.. .++.
T Consensus 414 YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvL 490 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVL 490 (629)
T ss_pred HHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 998877554443333 3555532 267788888999999999999999999876543432 4455
Q ss_pred hHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhC
Q 001357 634 LGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQH 671 (1093)
Q Consensus 634 l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 671 (1093)
||.+ +... |+..++......++...
T Consensus 491 Ls~v-~lsl------------gn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 491 LSHV-FLSL------------GNTVESRNMVRPAMQLA 515 (629)
T ss_pred HHHH-HHHh------------cchHHHHhccchHHHHH
Confidence 6777 6666 77778877777666543
No 138
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.91 E-value=3.2e-07 Score=94.18 Aligned_cols=304 Identities=15% Similarity=0.098 Sum_probs=197.5
Q ss_pred HHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCCchhhHHHHHHHHHH
Q 001357 278 FFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI---NKPHEFIFPYYGLGQVQLK 354 (1093)
Q Consensus 278 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~la~~~~~ 354 (1093)
++...++.+++....+.+............+-.+..+...+|.|.+++.+--..++.. .+......++.+++..+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443322222233444455666777777777766544433311 1222334567888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH-hc
Q 001357 355 LGDFRSALTNFEKVLEIYPD-----NCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD------AQAFIDLGELL-IS 422 (1093)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~------~~~~~~la~~~-~~ 422 (1093)
..++.+++.+....+..... ...+...++.++..++.++++++.|+++++...++ ..++..|+.++ ..
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 88888888888777665322 23567778889999999999999999998764322 45778889999 88
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhh
Q 001357 423 SDTGAALDAFKTARTLLKKAGEE-VP----IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASA 497 (1093)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~~~~-~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 497 (1093)
.++++|+-+..++..+....+-. .. ..+++.++..+...|..-.|.++.+++.++....
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~---------------- 239 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH---------------- 239 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh----------------
Confidence 99999999999999888776522 22 4677889999999999999999999998753211
Q ss_pred hHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHH
Q 001357 498 SMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQD------YVDAYLRLAAIAKA 571 (1093)
Q Consensus 498 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~ 571 (1093)
...+........+|.+|...|+.+.|..-|+.+...... ...++...+.++..
T Consensus 240 ---------------------Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~ 298 (518)
T KOG1941|consen 240 ---------------------GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET 298 (518)
T ss_pred ---------------------CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 033456677888999999999999999999998864332 13344444444333
Q ss_pred cCCH-----HHHHHHHHHHHHHcCCC------hhHHHHhhhhhhcccchHHHHHHHHH
Q 001357 572 RNNL-----QLSIELVNEALKVNGKY------PNALSMLGDLELKNDDWVKAKETFRA 618 (1093)
Q Consensus 572 ~g~~-----~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (1093)
..-. -.|+++-.+++++...- ...+..++.+|...|.-++-...+.+
T Consensus 299 ~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 299 LRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 2222 23666666666554221 22556677777666665554444443
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.91 E-value=3.1e-08 Score=91.99 Aligned_cols=108 Identities=20% Similarity=0.326 Sum_probs=95.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRLG 202 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~ 202 (1093)
+.+++.+|..++..|++++|+..|..++..+|++ +.+++.+|.+++..|+++.|+.+|+.++..+|+.+ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578899999999999999999999999998876 57889999999999999999999999999988852 567889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1093)
+|.++..+|+++.|+..|.+++...|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999998876543
No 140
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=1.1e-07 Score=90.58 Aligned_cols=132 Identities=27% Similarity=0.232 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 81 ERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1093)
Q Consensus 81 ~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1093)
+|..+++-.|.+|-.+|-.. -|.--|.+++.+.|.-+.++..+|..+...|+|+.|...|+.+++++|.
T Consensus 63 eRA~l~fERGvlYDSlGL~~-----------LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRA-----------LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHHHHHhcchhhhhhHHH-----------HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 56777777788887777766 7888899999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHH-HHHHh
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF-QRALQ 225 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~-~~al~ 225 (1093)
+..+....|..++--|+|.-|...+.+..+.+|+++-. ...-.+-...-++.+|...+ +++..
T Consensus 132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR--~LWLYl~E~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFR--SLWLYLNEQKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHH--HHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988422 11112222334556665544 34433
No 141
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.86 E-value=4.3e-08 Score=109.09 Aligned_cols=112 Identities=15% Similarity=0.222 Sum_probs=104.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001357 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1093)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1093)
+...|..++..|+|.+|+.+|.+++..+|.+ ..+++.+|.+|..+|++++|+..+.+++.++|.+..+++.+|.++...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 5677899999999999999999999999999 778999999999999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 245 NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 245 ~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
|+ +.+|+..|++++.++|.++.+...++.+...
T Consensus 84 g~---~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 84 EE---YQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99 9999999999999999999888777666433
No 142
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.84 E-value=0.00026 Score=79.36 Aligned_cols=229 Identities=19% Similarity=0.192 Sum_probs=116.4
Q ss_pred HHHHHHcCChHHHHHHHHH------HHHh----CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 169 ACVEFNRGRYSDSLEFYKR------ALQV----HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~------al~~----~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
|.++-+..++++|+.+|++ ++++ .|.....+--..|.-+...|+++.|+..|-.+--+ ..-.
T Consensus 668 gdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~--------~kai 739 (1636)
T KOG3616|consen 668 GDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCL--------IKAI 739 (1636)
T ss_pred hhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhH--------HHHH
Confidence 3344444555566655543 2222 23332233334566667777777777776553211 1111
Q ss_pred HHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhc
Q 001357 239 VMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK 318 (1093)
Q Consensus 239 ~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~ 318 (1093)
........ +.+|+..+...-... .....+-.++..|...|+|+-|..+|..+- .+..-...|.+.
T Consensus 740 eaai~ake---w~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----------~~~dai~my~k~ 804 (1636)
T KOG3616|consen 740 EAAIGAKE---WKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD-----------LFKDAIDMYGKA 804 (1636)
T ss_pred HHHhhhhh---hhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc-----------hhHHHHHHHhcc
Confidence 11222222 666666655443222 122334456777777777777777776542 233344566677
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 319 GDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQEL 398 (1093)
Q Consensus 319 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 398 (1093)
|++.+|.++-.+.. .+......|...+.-+-..|+|.+|..+|-.+- .|+. ....|-+.|..+..+.+
T Consensus 805 ~kw~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~--~p~~------aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG--EPDK------AIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred ccHHHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc--CchH------HHHHHHhhCcchHHHHH
Confidence 77777777666554 334444556666666667777777666553221 1211 12234444555444444
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001357 399 LRKAAKIDPRD-AQAFIDLGELL-ISSDTGAALDAFKTA 435 (1093)
Q Consensus 399 l~~~l~~~p~~-~~~~~~la~~~-~~~~~~~A~~~~~~a 435 (1093)
..+. .|+. ...+..++.-+ ..|+...|...|-++
T Consensus 873 v~k~---h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 873 VEKH---HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHh---ChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 3332 2322 34455556656 666666666555443
No 143
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.83 E-value=0.00021 Score=78.15 Aligned_cols=430 Identities=13% Similarity=0.138 Sum_probs=246.8
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC
Q 001357 221 QRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH 300 (1093)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 300 (1093)
++-++.+|.+..+|..|..-+... . +++....|++.+...|..+.+|...+...+...+|+.++.+|.+.+...
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~---~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv-- 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-P---IDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV-- 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-C---HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--
Confidence 677889999999999998877666 4 8999999999999999999999999999999999999999999988542
Q ss_pred CCCchHHHHHH-HHHHHhcCCHHHHH----HHHHHHHHhcCCCCCchhhHHHHHHHHHH---cCCHHHHHHHHHHHHHhC
Q 001357 301 GPTKSHSYYNL-ARSYHSKGDYEKAG----LYYMASVKEINKPHEFIFPYYGLGQVQLK---LGDFRSALTNFEKVLEIY 372 (1093)
Q Consensus 301 ~~~~~~~~~~l-a~~~~~~g~~~~A~----~~~~~al~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~ 372 (1093)
...+.|... -.+-...|....+. ..|+-++..+.-++.....|...+..+.. .|.|+
T Consensus 84 --LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~e------------- 148 (656)
T KOG1914|consen 84 --LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYE------------- 148 (656)
T ss_pred --hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHH-------------
Confidence 112333222 12222233333322 23333333333223333333333322211 11111
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHH-----------HHHHH--HH-hcCCHHHHHHHHHHHHH
Q 001357 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA-QAF-----------IDLGE--LL-ISSDTGAALDAFKTART 437 (1093)
Q Consensus 373 p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~-~~~-----------~~la~--~~-~~~~~~~A~~~~~~a~~ 437 (1093)
...+.+.....|++++..--.+. ..| ..+|. +- ....|..|...++....
T Consensus 149 ---------------e~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~ 213 (656)
T KOG1914|consen 149 ---------------ENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQN 213 (656)
T ss_pred ---------------HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 11133334444444443211110 000 00111 11 22234444444444443
Q ss_pred HHHhcCCCCC-------------HHHHHHHHHHHHHcCCH-------H-HHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001357 438 LLKKAGEEVP-------------IEVLNNIGVIHFEKGEF-------E-SAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (1093)
Q Consensus 438 ~~~~~~~~~~-------------~~~~~~la~~~~~~g~~-------~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 496 (1093)
+........+ .+.|.++...-...+-- . .-.-.|++++.
T Consensus 214 lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll-------------------- 273 (656)
T KOG1914|consen 214 LTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLL-------------------- 273 (656)
T ss_pred HHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHH--------------------
Confidence 3322110000 11121111111000000 0 00001111111
Q ss_pred hhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC--------------hHHHHHHHHHHHHhc-CChHHH
Q 001357 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD--------------TVAASVLYRLILFKY-QDYVDA 561 (1093)
Q Consensus 497 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~l~~~-p~~~~~ 561 (1093)
.-+..+.+|+..+..+...++ ..++..+|+.++..- ..+...
T Consensus 274 -----------------------~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 274 -----------------------YLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred -----------------------HHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 112234455544444443333 667777888777532 223444
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHHcCCChh-HHHHhhhhhhcccchHHHHHHHHHhhhcCCC-CChHHHHHhHh
Q 001357 562 YLRLAAIAKARN---NLQLSIELVNEALKVNGKYPN-ALSMLGDLELKNDDWVKAKETFRAASDATDG-KDSYATLSLGN 636 (1093)
Q Consensus 562 ~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~d~~~~~~l~~ 636 (1093)
++.++..-...- ..+.....+++++.+...++. +|..+...-.+..-...|..+|.++-+..-. ++.+...++..
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 444444322222 366677788888877655544 5666777777777789999999998875433 35665555443
Q ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhH
Q 001357 637 WNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDV 716 (1093)
Q Consensus 637 ~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 716 (1093)
|+.. ++..-|..+|+--+...++.+...+.....+...|+-..|..+|++++...- + ......+
T Consensus 411 --y~cs------------kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l-~-~~ks~~I 474 (656)
T KOG1914|consen 411 --YYCS------------KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL-S-ADKSKEI 474 (656)
T ss_pred --HHhc------------CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC-C-hhhhHHH
Confidence 4445 8899999999999999999999999999999999999999999999998721 0 0134577
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhc
Q 001357 717 WINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1093)
Q Consensus 717 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 745 (1093)
|..+-..-..-|+...++++=++....|+
T Consensus 475 w~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 475 WDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 77777777778999888888777777765
No 144
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=1.3e-06 Score=104.43 Aligned_cols=230 Identities=16% Similarity=0.208 Sum_probs=187.6
Q ss_pred EEeCCCCCCChhHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 001357 16 RVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTY 95 (1093)
Q Consensus 16 ~~~~~~lp~~~~~~~~~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~ 95 (1093)
.+|++.-|.+++|+..++...|...-.|+.-..-....+.++.|+++.++|+.. ++ | ....++.-+|..+-++-..
T Consensus 1434 ~~dl~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN--~-REeeEKLNiWiA~lNlEn~ 1509 (1710)
T KOG1070|consen 1434 ERDLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-IN--F-REEEEKLNIWIAYLNLENA 1509 (1710)
T ss_pred hcccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CC--c-chhHHHHHHHHHHHhHHHh
Confidence 366778899999999999999999999999999999999999999999999865 21 1 2233455555544444444
Q ss_pred hchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001357 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175 (1093)
Q Consensus 96 ~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 175 (1093)
.|--+ .-.+.|++|-+.. +-..++..+..+|...+.+++|.++|+.+++...+....|..+|..++++
T Consensus 1510 yG~ee-----------sl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1510 YGTEE-----------SLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred hCcHH-----------HHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 44222 4456666665543 22456778889999999999999999999999888899999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHH
Q 001357 176 GRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGM 254 (1093)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al 254 (1093)
.+-+.|..++.+++..-|.. ...+....|.+-++.|+.+.++.+|+-.+..+|...+.|..+...-...++ .....
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR 1654 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVR 1654 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHH
Confidence 99999999999999999883 144556678899999999999999999999999999999999999998888 88888
Q ss_pred HHHHHHHHhC
Q 001357 255 EKMQRAFEIY 264 (1093)
Q Consensus 255 ~~~~~al~~~ 264 (1093)
.+|++++.+.
T Consensus 1655 ~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1655 DLFERVIELK 1664 (1710)
T ss_pred HHHHHHHhcC
Confidence 9999998764
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.2e-07 Score=97.04 Aligned_cols=122 Identities=19% Similarity=0.234 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---ChHHHHHHHH
Q 001357 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG---RYSDSLEFYK 186 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g---~~~~Al~~~~ 186 (1093)
.+..+.-++.-+..||+|+..|..+|.+|+..|++..|...|.+++++.|+|+..+.++|.+++.+. .-.++..+|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 5566677777788888888888888888888888888888888888888888888888888777654 3557788888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1093)
+++..+|.+ ..+++.+|..++..|++.+|...|+.++...|.+..
T Consensus 218 ~al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 888888888 666777888888888888888888888887776543
No 146
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.80 E-value=2.7e-06 Score=101.84 Aligned_cols=234 Identities=16% Similarity=0.186 Sum_probs=189.4
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCc----HHHHHHHHHHHHHhhhHHhHHH
Q 001357 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ-LDPEN----VEALVALAVMDLQANEAAGIRK 252 (1093)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~----~~a~~~la~~~~~~~~~~~~~~ 252 (1093)
-.+...-|.+.+..+|+. ...|+.+-..+..+++.+.|+..++++|. +++.. ...|..+-++....|. -+.
T Consensus 1440 ~pesaeDferlvrssPNS-Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~---ees 1515 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNS-SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT---EES 1515 (1710)
T ss_pred CCcCHHHHHHHHhcCCCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc---HHH
Confidence 344567788889999998 77788888888999999999999999987 44543 3345555555555554 456
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001357 253 GMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASV 332 (1093)
Q Consensus 253 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 332 (1093)
..+.|++|.+.. +...++..|..+|...+.+++|.++++.+++... .....|..++..++.+++-+.|..++.+++
T Consensus 1516 l~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~---q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1516 LKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG---QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc---chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 667888887764 3346788899999999999999999999997764 445899999999999999999999999999
Q ss_pred HhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH
Q 001357 333 KEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID--PRDA 410 (1093)
Q Consensus 333 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--p~~~ 410 (1093)
..+|. ..+.......|++-++.|+.+.+..+|+..+..+|.-.++|..+...-.+.|....+..+|++++.+. |...
T Consensus 1592 ~~lPk-~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1592 KSLPK-QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhcch-hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 87655 45667777889999999999999999999999999999999999999999999999999999998765 5555
Q ss_pred HHHHHHHHHH
Q 001357 411 QAFIDLGELL 420 (1093)
Q Consensus 411 ~~~~~la~~~ 420 (1093)
..++....-|
T Consensus 1671 KfffKkwLey 1680 (1710)
T KOG1070|consen 1671 KFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 147
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.79 E-value=4.8e-06 Score=85.81 Aligned_cols=243 Identities=24% Similarity=0.249 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC--CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKP--HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN------CE 377 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~ 377 (1093)
+++.++++.+...-++.+++.+-...+..-... ..-..+...++.++..++.++++++.|+.+++...++ ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 566667777777777777766665555321111 1122445567777777777777777777777653221 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CC------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-
Q 001357 378 TLKALGHIYVQLGQIEKAQELLRKAAKIDP----RD------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE- 445 (1093)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~p----~~------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~- 445 (1093)
++..+|.++.+..++++|+-+..++..+.. ++ ..+++.++..+ ..|....|.++.+.+.++.-..++.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 677777788888888888777777766531 12 23455566666 7788888888888887776554432
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchH
Q 001357 446 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 525 (1093)
Q Consensus 446 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 525 (1093)
.....+..+|.+|...|+.+.|..-|+.+........ ..-...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g-------------------------------------drmgqv 286 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG-------------------------------------DRMGQV 286 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh-------------------------------------hhHHHH
Confidence 2256677788999999999999998888876311000 011133
Q ss_pred HHHHHHHHHHHhcCChH-----HHHHHHHHHHHhcCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 526 TVLFNLARLLEQIHDTV-----AASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEA 585 (1093)
Q Consensus 526 ~~~~~la~~~~~~g~~~-----~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a 585 (1093)
.++...|.++....-.. .|+++-.++++.... ....+.+++.+|...|.-++-...+..+
T Consensus 287 ~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra 357 (518)
T KOG1941|consen 287 EALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRA 357 (518)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34444455544333333 366666666654322 2457788889998888777665555443
No 148
>PRK15331 chaperone protein SicA; Provisional
Probab=98.78 E-value=1e-07 Score=89.00 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=99.1
Q ss_pred HHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Q 001357 120 ASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (1093)
Q Consensus 120 a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~ 199 (1093)
+..+.+..-...+..|.-++..|++++|..+|+-+.-.+|.++..|+++|.++..+++|++|+..|..+..+.+++ +.+
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p 107 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRP 107 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCc
Confidence 4445556667889999999999999999999999999999999999999999999999999999999999999988 677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
.+..|.|++.+|+...|+.+|..++. .|.+
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 89999999999999999999999998 4543
No 149
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=2.7e-07 Score=88.06 Aligned_cols=105 Identities=18% Similarity=0.200 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCR 207 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 207 (1093)
...++.+|..|-..|-+.-|.-.|.+++.+.|.-+.++..+|..+...|+|+.|...|..+++++|.. ..++.+.|..+
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~ 143 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIAL 143 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceee
Confidence 34677889999999999999999999999999999999999999999999999999999999999999 78899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCcHHH
Q 001357 208 YKLGQLGKARQAFQRALQLDPENVEA 233 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1093)
+--|++.-|..-|.+-.+.+|+++--
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHH
Confidence 99999999999999999999998754
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.76 E-value=2.4e-07 Score=92.13 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=100.4
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1093)
|....+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..|.+++...|.+ ...+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHH
Confidence 4556678999999999999999999999999877653 5689999999999999999999999999999998 67788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
.+|.++...|+...+...+..++.. +.+|+..+++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~-----------------------~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEAL-----------------------FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHH-----------------------HHHHHHHHHHHHhhCchh
Confidence 8999999999987777666655431 677888888888888876
No 151
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=0.00061 Score=73.56 Aligned_cols=222 Identities=13% Similarity=0.060 Sum_probs=142.2
Q ss_pred hcCChHHHHHHHHHHHHhc------CChHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHHc---CC-------C
Q 001357 537 QIHDTVAASVLYRLILFKY------QDYVD--------AYLRLAAIAKARNNLQLSIELVNEALKVN---GK-------Y 592 (1093)
Q Consensus 537 ~~g~~~~A~~~~~~~l~~~------p~~~~--------~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~-------~ 592 (1093)
..|-+++|.++-.+++... |.... .+-.++.+-.-.|++.+|+.-+..+.... |. .
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 4566777777777776532 11111 22333445556799999998887776654 43 2
Q ss_pred hhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHH--HhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhh
Q 001357 593 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL--SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQ 670 (1093)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~--~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 670 (1093)
+.++..+|......+.++.|...|..+.+.....+..+++ +++.. |... ++.+ .+|+-.-.+
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~-YL~~------------~~~e---d~y~~ld~i 430 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS-YLRI------------GDAE---DLYKALDLI 430 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH-HHHh------------ccHH---HHHHHHHhc
Confidence 3366777877788889999999999999987776665443 45666 7665 3332 233322233
Q ss_pred CCCC----------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHHHHhcCHHHHHHHHHH
Q 001357 671 HTSN----------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVF-VQMPDVWINLAHVYFAQGNFALAMKMYQN 739 (1093)
Q Consensus 671 ~p~~----------~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 739 (1093)
.|.| ..+++..|.....++++.+|...+.+.++.....+. .-....+..||++....|+..++..+..-
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccch
Confidence 4442 123455566677899999999999999887521111 11344566789999999999999999998
Q ss_pred HHHhhcCCCCH--HHHH--HHHHHHHhhcc--HHHHHHHHH
Q 001357 740 CLRKFYYNTDA--QILL--YLARTHYEAEQ--WQDCKKSLL 774 (1093)
Q Consensus 740 al~~~~~~~~~--~~l~--~la~~~~~~g~--~~~A~~~~~ 774 (1093)
++......+|. ..|. .+-..|...|. .....+.|.
T Consensus 511 amqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 511 AMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 88876666772 2222 34445555666 444444443
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.74 E-value=2.4e-07 Score=85.99 Aligned_cols=108 Identities=29% Similarity=0.358 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDN---CETLKAL 382 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l 382 (1093)
..++.+|..+...|++++|+..|..++...+..+....+++.+|.++...|+++.|+.+|+.++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 5677778888888888888888888877544444445677778888888888888888888888877764 5678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001357 383 GHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413 (1093)
Q Consensus 383 a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 413 (1093)
|.++...|++++|+.++.+++...|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888888776544
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=4.9e-07 Score=92.73 Aligned_cols=119 Identities=22% Similarity=0.161 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHH
Q 001357 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQ 258 (1093)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~ 258 (1093)
+.-+.-++..+..+|++ ..-|..+|.+|+.+|++..|...|.+++++.|+|++.+..+|.+++...+.....++...|.
T Consensus 139 ~~l~a~Le~~L~~nP~d-~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPGD-AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 34444455556666666 44566666666666666666666666666666666666666666655554444556666666
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Q 001357 259 RAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVT 298 (1093)
Q Consensus 259 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 298 (1093)
+++..+|.+..+++.||..++..|+|.+|...++.++...
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 6666666666666666666666666666666666666543
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.73 E-value=4.7e-08 Score=80.30 Aligned_cols=67 Identities=25% Similarity=0.529 Sum_probs=44.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG-RYSDSLEFYKRALQVHP 193 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g-~~~~Al~~~~~al~~~p 193 (1093)
++.+|+.+|.+++..|++++|+..|.+++..+|+++.+++.+|.++..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566666666666666666666666666666666666666666666666 56666666666666665
No 155
>PRK11906 transcriptional regulator; Provisional
Probab=98.72 E-value=7.3e-07 Score=97.15 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=109.5
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCh
Q 001357 132 VGKGQLLLAKGE---VEQASSAFKIVL---EADRDNVPALLGQACVEFNR---------GRYSDSLEFYKRALQVHPSCP 196 (1093)
Q Consensus 132 ~~~a~~~~~~g~---~~~A~~~~~~al---~~~p~~~~a~~~la~~~~~~---------g~~~~Al~~~~~al~~~p~~~ 196 (1093)
+.+|...+..+. ...|+.+|.+++ ..+|....++-.+|.|++.. ....+|+....+++.++|.+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D- 337 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD- 337 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC-
Confidence 667777766664 577888999999 88888899998888888764 23457788888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH
Q 001357 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1093)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~ 269 (1093)
+.++..+|.+++..++++.|...|++++.++|+.+.+|+..|.+....|+ .++|+..++++++++|....
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCchhhH
Confidence 77788888888888888888888888888888888888888888888888 88888888888888886543
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.72 E-value=1.4e-07 Score=83.26 Aligned_cols=98 Identities=33% Similarity=0.584 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1093)
+++.+|.+++..|++++|+..|..++...|.+..++..+|.++...|++++|+.+|.+++...|.. ..++..+|.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 466778888888888888888888888888777778888888888888888888888888877777 4567777888888
Q ss_pred cCCHHHHHHHHHHHHhhCC
Q 001357 210 LGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 210 ~g~~~~A~~~~~~al~~~p 228 (1093)
.|+++.|...+.+++..+|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 8888888888877777665
No 157
>PRK11906 transcriptional regulator; Provisional
Probab=98.70 E-value=1.2e-06 Score=95.59 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001357 109 HFILATQYYNKAS---RIDMHEPSTWVGKGQLLLAK---------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1093)
Q Consensus 109 ~~~~A~~~~~~a~---~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1093)
....|+.+|.+++ .++|....++-.++.+++.. ....+|..+.++++..+|.++.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4568999999999 99999999999999988765 24678899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH--HHHHhhhHHhHHHHH
Q 001357 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV--MDLQANEAAGIRKGM 254 (1093)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~--~~~~~~~~~~~~~Al 254 (1093)
+++.|...|++++.++|+. +.+++..|..+...|+.++|+..++++++++|....+-...-. .|+..+ .+.|+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~----~~~~~ 427 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP----LKNNI 427 (458)
T ss_pred chhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc----hhhhH
Confidence 9999999999999999999 8889999999999999999999999999999986655433322 344433 67777
Q ss_pred HHHHHHHH
Q 001357 255 EKMQRAFE 262 (1093)
Q Consensus 255 ~~~~~al~ 262 (1093)
.+|-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 77765433
No 158
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=7.7e-06 Score=81.40 Aligned_cols=195 Identities=14% Similarity=0.156 Sum_probs=137.6
Q ss_pred HHHHHHHHHHhcCChHHHHHH-HHHHHHhcCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhh
Q 001357 527 VLFNLARLLEQIHDTVAASVL-YRLILFKYQD-YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (1093)
Q Consensus 527 ~~~~la~~~~~~g~~~~A~~~-~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 604 (1093)
+...++..+..-++.+.-+.- ++.+...... +......-+.+++..|++++|...... ..+.++...-..+++
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~l 148 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILL 148 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHH
Confidence 333444444444554444433 3333333333 234455556778888899999887765 345566677777888
Q ss_pred cccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 001357 605 KNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVV 684 (1093)
Q Consensus 605 ~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~ 684 (1093)
++.+++-|...++++.+.. +-.++..|+.. |...+... +.+..|.-+|+.+-...|..+...++.+.+
T Consensus 149 k~~r~d~A~~~lk~mq~id---ed~tLtQLA~a-wv~la~gg--------ek~qdAfyifeE~s~k~~~T~~llnG~Av~ 216 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQID---EDATLTQLAQA-WVKLATGG--------EKIQDAFYIFEELSEKTPPTPLLLNGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHHHHHccc---hHHHHHHHHHH-HHHHhccc--------hhhhhHHHHHHHHhcccCCChHHHccHHHH
Confidence 8889999999998888775 33555667777 77664443 568888888888888788888888888888
Q ss_pred HHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 685 LAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 685 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
++.+|++++|..+++.++...+ .+|+++.|+..+-...|...++..-+-.-++.
T Consensus 217 ~l~~~~~eeAe~lL~eaL~kd~-----~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDKDA-----KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 8888888888888888888887 67888888888888888877776665555554
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.68 E-value=1e-06 Score=84.60 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHH
Q 001357 112 LATQYYNKASRIDMHE---PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFY 185 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~ 185 (1093)
.+...++.+...+|+. ..+.+.+|.+++..|++++|...|+.++...|+. ..+.+.+|.+++..|+|++|+..+
T Consensus 29 ~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L 108 (145)
T PF09976_consen 29 KAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATL 108 (145)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4444555555555555 3444555666666666666666666666554433 234555566666666666666665
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 186 KRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1093)
Q Consensus 186 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1093)
+.+ . .+...+.++..+|.++...|++++|+..|+++
T Consensus 109 ~~~-~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 109 QQI-P-DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred Hhc-c-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 442 1 11122344555666666666666666666554
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.68 E-value=5.9e-07 Score=94.21 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=93.1
Q ss_pred hhhHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHH
Q 001357 128 PSTWVGKGQLL-LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1093)
Q Consensus 128 ~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1093)
...++..|..+ +..|+|++|+..|+.++...|++ +.+++.+|.+|+..|+|++|+..|.+++...|++ .+.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46777788776 56799999999999999999987 5799999999999999999999999999988876 367788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1093)
.+|.++..+|+++.|+..|+++++..|++..+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 8999999999999999999999999998775533
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.68 E-value=6.1e-07 Score=88.87 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 112 LATQYYNKASRIDMHE--PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.+...+...++.++.+ ...|+.+|.++...|++++|+..|.+++...|+. +.++..+|.++...|++++|+..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444444443 4566777777777788888888888877765542 3467777777777777777777777
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
+++...|.. ...+..+|.++..+|
T Consensus 97 ~Al~~~~~~-~~~~~~la~i~~~~~ 120 (168)
T CHL00033 97 QALERNPFL-PQALNNMAVICHYRG 120 (168)
T ss_pred HHHHhCcCc-HHHHHHHHHHHHHhh
Confidence 777777776 455666677666444
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.68 E-value=2.7e-07 Score=96.77 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-HH
Q 001357 674 NLYAANGAGVVL-AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQ 751 (1093)
Q Consensus 674 ~~~a~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~ 751 (1093)
+...++..+..+ ...|++++|+..|+.++..+|++.+ .+.+++.+|.+|+..|++..|+..|+.++..||.++. +.
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~--a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY--QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 345566666655 5679999999999999999996643 4689999999999999999999999999999987665 89
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcc
Q 001357 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1093)
Q Consensus 752 ~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 785 (1093)
+++.+|.++...|+++.|+.+|++++..+|+...
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 9999999999999999999999999999998753
No 163
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.68 E-value=2.1e-07 Score=94.22 Aligned_cols=107 Identities=16% Similarity=0.267 Sum_probs=99.4
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-HHHHHHH
Q 001357 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (1093)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~l 756 (1093)
.+..+.-+...|+|..|...|...++.+|++.+ .+.++|.||.+++.+|+|..|...|..+++.||.++- |+.++-|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 667777888899999999999999999998865 5789999999999999999999999999999988776 8999999
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCCcch
Q 001357 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNYTL 786 (1093)
Q Consensus 757 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 786 (1093)
|.+....|+.++|..+|+++++.+|+.+..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999999999999999999999988654
No 164
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.68 E-value=8.4e-07 Score=85.27 Aligned_cols=119 Identities=19% Similarity=0.208 Sum_probs=97.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHcCCH
Q 001357 139 LAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLGIGLCRYKLGQL 213 (1093)
Q Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~la~~~~~~g~~ 213 (1093)
+..+++..+...++.++..+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. ...+++.++.+++..|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 36888999999999999999988 5678889999999999999999999999987655 345688899999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001357 214 GKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1093)
Q Consensus 214 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1093)
++|+..+..+ ...+-.+.++..+|.++...|+ +++|+..|++++
T Consensus 102 d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQI-PDEAFKALAAELLGDIYLAQGD---YDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHhC
Confidence 9999998663 3344456677788888888888 888888887763
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.67 E-value=1.3e-06 Score=101.02 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=116.0
Q ss_pred CCCChhhH--HHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHH
Q 001357 124 DMHEPSTW--VGKGQLLLAKGE---VEQASSAFKIVLEADRDNVPALLGQACVEFNRG--------RYSDSLEFYKRALQ 190 (1093)
Q Consensus 124 ~p~~~~~~--~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--------~~~~Al~~~~~al~ 190 (1093)
-|.++.+| +.+|..++..+. +..|+.+|+++++.+|++..++..++.++.... +...+.....+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 35555554 667888877765 889999999999999999999999888776542 23455555666555
Q ss_pred h--CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 191 V--HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 191 ~--~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
. .|.. +.++..+|..+...|++++|...|++++.++| +..++..+|.++...|+ +++|+..|.+++.++|..+
T Consensus 413 l~~~~~~-~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVL-PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCc
Confidence 4 5555 56788889999999999999999999999999 58899999999999999 9999999999999999988
Q ss_pred H
Q 001357 269 M 269 (1093)
Q Consensus 269 ~ 269 (1093)
.
T Consensus 488 t 488 (517)
T PRK10153 488 T 488 (517)
T ss_pred h
Confidence 5
No 166
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.67 E-value=9e-08 Score=78.62 Aligned_cols=67 Identities=30% Similarity=0.639 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-QLGKARQAFQRALQLDP 228 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 228 (1093)
++.+|..+|.+++..|+|++|+..|.+++..+|++ +.+++.+|.|+..+| ++.+|+..|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777776 566777777777777 57777777777777666
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.67 E-value=5.6e-08 Score=83.34 Aligned_cols=81 Identities=30% Similarity=0.509 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001357 141 KGEVEQASSAFKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQ 218 (1093)
Q Consensus 141 ~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~ 218 (1093)
+|+|+.|+.+|++++...|. +...++.+|.++++.|+|.+|+.++++ +..+|.+ ...++.+|.|++.+|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777776664 344566667777777777777777766 5555554 4455556777777777777777
Q ss_pred HHHHH
Q 001357 219 AFQRA 223 (1093)
Q Consensus 219 ~~~~a 223 (1093)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 66653
No 168
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.65 E-value=7.1e-06 Score=82.42 Aligned_cols=199 Identities=20% Similarity=0.207 Sum_probs=127.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCP--GAIRL 201 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~ 201 (1093)
.+..|+..|...++.|+|.+|...|+.+....|.+ ..+.+.++.++++.++|+.|+...++.+.+.|.++ ..+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988865 56889999999999999999999999999999873 34445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1093)
..|.+++..= + ....+......|+..|+..+...|++.-+-.....+
T Consensus 113 lkgLs~~~~i---------------~--------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i---- 159 (254)
T COG4105 113 LKGLSYFFQI---------------D--------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI---- 159 (254)
T ss_pred HHHHHHhccC---------------C--------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH----
Confidence 5555522110 0 001122236677777777777777765332221111
Q ss_pred CChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHH
Q 001357 282 GQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSA 361 (1093)
Q Consensus 282 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A 361 (1093)
..+...+ +.--+.+|+.|.+.|.+-.|+..++.+++..+..+....++..+..+|..+|-.++|
T Consensus 160 -------~~~~d~L---------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 160 -------VKLNDAL---------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred -------HHHHHHH---------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 1111111 122344566666666666666666666665555555555666666666666666666
Q ss_pred HHHHHHHHHhCCC
Q 001357 362 LTNFEKVLEIYPD 374 (1093)
Q Consensus 362 ~~~~~~~l~~~p~ 374 (1093)
-..-.-+....|+
T Consensus 224 ~~~~~vl~~N~p~ 236 (254)
T COG4105 224 KKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHHhcCCC
Confidence 5554433333343
No 169
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.2e-07 Score=97.27 Aligned_cols=140 Identities=21% Similarity=0.205 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhh-hhh-----hHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHH
Q 001357 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEY-YAD-----VRYERIAILNALGVYYTYLGKIETKQREKEEHFILAT 114 (1093)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~-~~~-----~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~ 114 (1093)
...-..|+.||+.|+|..|...+++++..-.... ++. ...-++.++.+|+.+|++++... .|+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~-----------~Ai 277 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYK-----------EAI 277 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHH-----------HHH
Confidence 3456778999999999999999999764311100 000 11123444444555555444433 555
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH-HHHHHHHHHh
Q 001357 115 QYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDS-LEFYKRALQV 191 (1093)
Q Consensus 115 ~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A-l~~~~~al~~ 191 (1093)
..+++++..+|+|+-++|.+|.+++..|+|+.|+..|+++++..|.|-.+...+..+..+...+... .+.|.+++..
T Consensus 278 ~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 278 ESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555555555555555555555555555555555555555555555555555555444444333332 4444444443
No 170
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=3.3e-05 Score=77.06 Aligned_cols=250 Identities=14% Similarity=0.047 Sum_probs=145.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 001357 314 SYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIE 393 (1093)
Q Consensus 314 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 393 (1093)
-++..|+|..++..-.+.-. .+........+...|+..|.+...+......- .....+...++.....-++.+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~----~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSS----SKTDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcc----ccchhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhH
Confidence 34445555555554444331 12333444555566666666554443332221 112334444444444444444
Q ss_pred HHHHHHHHHHHh-CCCCHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 394 KAQELLRKAAKI-DPRDAQAFIDL-GELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQS 470 (1093)
Q Consensus 394 ~A~~~l~~~l~~-~p~~~~~~~~l-a~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 470 (1093)
.-+.-+.+.+.. .-....++..+ +.++ ..+++++|+........ .++...-..++.+..+++-|...
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----------lE~~Al~VqI~lk~~r~d~A~~~ 159 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----------LEAAALNVQILLKMHRFDLAEKE 159 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333322 22222233333 3344 77777777776654222 23333345566777778888888
Q ss_pred HHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHh----cCChHHHHH
Q 001357 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ----IHDTVAASV 546 (1093)
Q Consensus 471 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~ 546 (1093)
++++... ++-.++..||..+.. .+.+..|.-
T Consensus 160 lk~mq~i---------------------------------------------ded~tLtQLA~awv~la~ggek~qdAfy 194 (299)
T KOG3081|consen 160 LKKMQQI---------------------------------------------DEDATLTQLAQAWVKLATGGEKIQDAFY 194 (299)
T ss_pred HHHHHcc---------------------------------------------chHHHHHHHHHHHHHHhccchhhhhHHH
Confidence 8777663 123344444444432 345778888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHH-HHhhhcCCC
Q 001357 547 LYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETF-RAASDATDG 625 (1093)
Q Consensus 547 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~l~~~~~ 625 (1093)
+|+..-...|..+...+..+.++..+|++++|..+++.++..++++++++.++..+-...|...++..-+ .+....+|.
T Consensus 195 ifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 195 IFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 8888887777778888888888888888888888888888888888888888888888888766555444 444444555
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.62 E-value=8.1e-07 Score=88.27 Aligned_cols=108 Identities=24% Similarity=0.454 Sum_probs=77.4
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381 (1093)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (1093)
+..+.+++.+|..+...|++++|+.+|.+++...+..+....+++.+|.++...|++++|+.++.+++...|.+...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 34456677788888888888888888888876433333345677888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCH--------------HHHHHHHHHHHHhCCCC
Q 001357 382 LGHIYVQLGQI--------------EKAQELLRKAAKIDPRD 409 (1093)
Q Consensus 382 la~~~~~~g~~--------------~~A~~~l~~~l~~~p~~ 409 (1093)
+|.++...|+. .+|+.++++++..+|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 88888877763 44555555555555544
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.62 E-value=8.9e-07 Score=95.63 Aligned_cols=202 Identities=17% Similarity=0.178 Sum_probs=131.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHH
Q 001357 384 HIYVQLGQIEKAQELLRKAAKID------PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGV 456 (1093)
Q Consensus 384 ~~~~~~g~~~~A~~~l~~~l~~~------p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~ 456 (1093)
.+|...+++++|...|.++.... ......+...+.++...++..|+.+|.+++.++...+.... ..++..+|.
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~ 122 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAE 122 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34444455555555555554321 01133445556667555888888888888888776654332 578889999
Q ss_pred HHHHc-CCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHH
Q 001357 457 IHFEK-GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL 535 (1093)
Q Consensus 457 ~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~ 535 (1093)
+|... |+++.|+.+|++|+....... .......++..+|.++
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-------------------------------------~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-------------------------------------SPHSAAECLLKAADLY 165 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--------------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-------------------------------------ChhhHHHHHHHHHHHH
Confidence 99998 999999999999998531000 0112456778899999
Q ss_pred HhcCChHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh-----HHHHhhhhh
Q 001357 536 EQIHDTVAASVLYRLILFKYQD-------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN-----ALSMLGDLE 603 (1093)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~ 603 (1093)
...|++++|+.+|+++....-+ ....++..+.+++..|++..|...+++....+|.... +...+..++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999999875422 1235567778889999999999999999999886543 333344443
Q ss_pred hc--ccchHHHHHHHHHhhhc
Q 001357 604 LK--NDDWVKAKETFRAASDA 622 (1093)
Q Consensus 604 ~~--~g~~~~A~~~~~~~l~~ 622 (1093)
-. ...+..|+..|..+..+
T Consensus 246 ~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS--
T ss_pred HhCCHHHHHHHHHHHcccCcc
Confidence 22 23477777777765544
No 173
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.61 E-value=0.0041 Score=75.18 Aligned_cols=472 Identities=15% Similarity=0.104 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHHhCCC----cHHHHHHHHHHHH-HcCChHHHHHHHHHHHhccCCCC---CchHHHHHHHHHHHhcCCH
Q 001357 250 IRKGMEKMQRAFEIYPY----CAMALNYLANHFF-FTGQHFLVEQLTETALAVTNHGP---TKSHSYYNLARSYHSKGDY 321 (1093)
Q Consensus 250 ~~~Al~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~ 321 (1093)
+..|+.+++-+++..+- ...+...+|.+++ .+.+++.|..++.+++....... ....+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 45566666666642221 3355666777766 77888888888888876554411 1234556678888888877
Q ss_pred HHHHHHHHHHHHhcCCCCCchh-hHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCcHH----HHHHHHHHHHHcCCH
Q 001357 322 EKAGLYYMASVKEINKPHEFIF-PYYGL--GQVQLKLGDFRSALTNFEKVLEIY--PDNCE----TLKALGHIYVQLGQI 392 (1093)
Q Consensus 322 ~~A~~~~~~al~~~~~~~~~~~-~~~~l--a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~----~~~~la~~~~~~g~~ 392 (1093)
. |+..+++.+......+.... ..+.+ ...+...+++..|+..++.+.... +.++. +....+.++...+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 7 88888888875543222221 12222 233333478999999998887764 33433 233345666667777
Q ss_pred HHHHHHHHHHHHhC----------CCCHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCC-------------
Q 001357 393 EKAQELLRKAAKID----------PRDAQAFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEV------------- 446 (1093)
Q Consensus 393 ~~A~~~l~~~l~~~----------p~~~~~~~~la~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~------------- 446 (1093)
+.+++.+.++.... +....++..+-.+. ..|++..+...++..-..+.......
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 88888887774321 12244555544433 66777676666555544443321110
Q ss_pred ------------C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHh
Q 001357 447 ------------P------------IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (1093)
Q Consensus 447 ------------~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1093)
. .-++..-|......|..+.|.+++.+++..-.....
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~------------------- 336 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKI------------------- 336 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhc-------------------
Confidence 0 111222244455556666777777777653110000
Q ss_pred hhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELV 582 (1093)
Q Consensus 503 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 582 (1093)
. .....+...... ..-..++..+ ...+.+..+.+.+-.+++..|...+
T Consensus 337 ----------~---~~~~~~~sl~~~-------------~~~~~~~~~l------~~~~~~y~~~~~~~~~~~~~a~~~l 384 (608)
T PF10345_consen 337 ----------K---SPSAPSESLSEA-------------SERIQWLRYL------QCYLLFYQIWCNFIRGDWSKATQEL 384 (608)
T ss_pred ----------c---CCCCCCcCHHHH-------------HHhHHHHHHH------HHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 0 000000000000 0000011100 0233445556666677777777777
Q ss_pred HHHHHHc---CC------ChhHHHHhhhhhhcccchHHHHHHHH--------HhhhcCCCCChHHHHHhHhHHHHHHHhh
Q 001357 583 NEALKVN---GK------YPNALSMLGDLELKNDDWVKAKETFR--------AASDATDGKDSYATLSLGNWNYFAALRN 645 (1093)
Q Consensus 583 ~~al~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~l~~~~~~d~~~~~~l~~~~y~~~~~~ 645 (1093)
..+.... |. .+.+++..|..+...|+.+.|...|. .+....+..+.+.+. ..|. +.-. ..
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila-~LNl-~~I~-~~ 461 (608)
T PF10345_consen 385 EFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA-ALNL-AIIL-QY 461 (608)
T ss_pred HHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH-HHHH-HHHh-Hh
Confidence 7666543 22 35577888888888888999998887 444444444444332 2222 2211 11
Q ss_pred cccCchHHHHHHHHHHHHHHHHHhhCCC-CHHHHH-HHHHHHH--hcCCchhHHHHHHHHHHHh-cCCCCCC-chhHHHH
Q 001357 646 EKRAPKLEATHLEKAKELYTRVIVQHTS-NLYAAN-GAGVVLA--EKGQFDVSKDLFTQVQEAA-SGSVFVQ-MPDVWIN 719 (1093)
Q Consensus 646 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~a~~-~la~~~~--~~g~~~~A~~~~~~~~~~~-p~~~~~~-~~~~~~~ 719 (1093)
+..... ...+....++..+......|+ +...++ .+..++. ..-...++...+...++.. ....... ..-++.-
T Consensus 462 ~~~~~~-~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~l 540 (608)
T PF10345_consen 462 ESSRDD-SESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNL 540 (608)
T ss_pred hcccch-hhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 110000 000133333333333333333 222222 2222222 2223457777777777665 2111111 2334555
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhcCCCC--HHHHH-----HHHHHHHhhccHHHHHHHHHHHHH
Q 001357 720 LAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILL-----YLARTHYEAEQWQDCKKSLLRAIH 778 (1093)
Q Consensus 720 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~-----~la~~~~~~g~~~~A~~~~~~al~ 778 (1093)
+++.++ .|+..+.......+.......++ ..+|. .+...+...|+.++|.....++..
T Consensus 541 m~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 541 MGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 677777 68888888887777765444433 33442 345567778999999888776644
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.60 E-value=1.3e-07 Score=76.50 Aligned_cols=63 Identities=30% Similarity=0.567 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 133 GKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
.+|..++..|++++|+.+|++++..+|.++.+++.+|.++...|++++|+.+|++++..+|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 466777777777777777777777777777777777777777777777777777777777765
No 175
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=5.2e-06 Score=88.77 Aligned_cols=137 Identities=21% Similarity=0.223 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCChHH
Q 001357 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV-LEADRD--------NVPALLGQACVEFNRGRYSD 180 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~a~~~la~~~~~~g~~~~ 180 (1093)
+..+......+..+..+.+.+++..+..++..|++..|.+.+... +...|. ...+|..+|.++++.|.|.-
T Consensus 222 Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~ 301 (696)
T KOG2471|consen 222 LKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQA 301 (696)
T ss_pred HHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHH
Confidence 335555556666666678889999999999999999999998764 222222 34567899999999999999
Q ss_pred HHHHHHHHHHh---------CCC--------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 181 SLEFYKRALQV---------HPS--------CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 181 Al~~~~~al~~---------~p~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
+..+|.++++. .|. -.-.+.|+.|..|...|++-.|.++|.+++.....++..|..++.+.+.
T Consensus 302 ~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 302 SSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999961 111 1245788999999999999999999999999999999999999998877
Q ss_pred hhh
Q 001357 244 ANE 246 (1093)
Q Consensus 244 ~~~ 246 (1093)
...
T Consensus 382 a~~ 384 (696)
T KOG2471|consen 382 ALQ 384 (696)
T ss_pred Hhh
Confidence 654
No 176
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=7e-07 Score=94.77 Aligned_cols=129 Identities=22% Similarity=0.278 Sum_probs=98.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCC------------CCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 001357 311 LARSYHSKGDYEKAGLYYMASVKEINKP------------HEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCET 378 (1093)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 378 (1093)
.|..|++.|+|..|...|.+++..+... .....++++++.++.+++.|..|+..++++|..+|+|+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhH
Confidence 4555555555555555555555433211 1123568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcC-CHHHHHHHHHHHHHHH
Q 001357 379 LKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISS-DTGAALDAFKTARTLL 439 (1093)
Q Consensus 379 ~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~-~~~~A~~~~~~a~~~~ 439 (1093)
++..|.++...|+++.|+..|++++++.|+|-.+...|..+. ... ......+.|..+....
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999998888887 333 3334455666555543
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.59 E-value=7.6e-08 Score=82.54 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY 185 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~ 185 (1093)
++|+.|+.+|++++..+|. +...++.+|.+++..|+|++|+.++++ ...+|.++...+.+|.+++.+|+|++|+.+|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5678999999999999995 466788899999999999999999999 7788888899999999999999999999999
Q ss_pred HHH
Q 001357 186 KRA 188 (1093)
Q Consensus 186 ~~a 188 (1093)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 874
No 178
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.58 E-value=7.4e-07 Score=78.60 Aligned_cols=98 Identities=29% Similarity=0.574 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
+++.+|.+++..|++.+|+..+.+++...|.. ..+++.+|.++...|+++.|+..|.+++...|.+..++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 46677888888888888888888888888877 56677888888888888888888888888888887788888888888
Q ss_pred hhhHHhHHHHHHHHHHHHHhCC
Q 001357 244 ANEAAGIRKGMEKMQRAFEIYP 265 (1093)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p 265 (1093)
.|+ +..|...+.+++..+|
T Consensus 81 ~~~---~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGK---YEEALEAYEKALELDP 99 (100)
T ss_pred HHh---HHHHHHHHHHHHccCC
Confidence 777 7888888887777665
No 179
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.56 E-value=0.00027 Score=74.57 Aligned_cols=203 Identities=30% Similarity=0.380 Sum_probs=111.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHH-
Q 001357 200 RLGIGLCRYKLGQLGKARQAFQRALQ--LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLAN- 276 (1093)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~- 276 (1093)
....+..+...+.+..+...+...+. ..+.....+..++.++...+. +..++..+..++...+...........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK---YEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh---HHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 33444444444444444444444443 334444444444444444443 444444444444444333222222333
Q ss_pred HHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHHHc
Q 001357 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHE-FIFPYYGLGQVQLKL 355 (1093)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~ 355 (1093)
++...|++..+...+.+++...+........+...+..+...+++..|+..+..++. ..+. ....+..++..+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHc
Confidence 444445555555554444331100012334444445556666777777777777776 2333 455677777777777
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 356 GDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPR 408 (1093)
Q Consensus 356 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~ 408 (1093)
+.+..|+..+..++...|.....+..++..+...+.+..+...+.+++...|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 77777777777777777765666666666666666677777777777777765
No 180
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.56 E-value=0.0002 Score=75.67 Aligned_cols=224 Identities=27% Similarity=0.374 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001357 108 EHFILATQYYNKASRIDMH--EPSTWVGKGQLLLAKGEVEQASSAFKIVLE--ADRDNVPALLGQACVEFNRGRYSDSLE 183 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1093)
..+..+...+..+....+. ........+..+...+.+..+...+...+. ..+.....+...+..+...+++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4555666666666666655 256666777777777777777777777765 566667777777777777777777777
Q ss_pred HHHHHHHhCCCChHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 001357 184 FYKRALQVHPSCPGAIRLGIGL-CRYKLGQLGKARQAFQRALQLDP---ENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1093)
Q Consensus 184 ~~~~al~~~p~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~ 259 (1093)
.+..++...+.. .......+. ++...|+++.|...|.+++..+| .....+..++..+...++ +..++..+.+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~ 192 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR---YEEALELLEK 192 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcC---HHHHHHHHHH
Confidence 777777766655 233344444 67777777777777777766555 233444444444444444 6666666666
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 001357 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339 (1093)
Q Consensus 260 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 339 (1093)
++...+.. ....+..++..+...+.+..|+..+..++.. .+
T Consensus 193 ~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~ 233 (291)
T COG0457 193 ALKLNPDD------------------------------------DAEALLNLGLLYLKLGKYEEALEYYEKALEL---DP 233 (291)
T ss_pred HHhhCccc------------------------------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhh---Cc
Confidence 66666552 2244555555555555666666666666552 22
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD 374 (1093)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 374 (1093)
.....+..++..+...+.+..+...+..++...|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 234 DNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 23344555555555555667777777777666665
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.55 E-value=1.5e-06 Score=100.53 Aligned_cols=125 Identities=11% Similarity=0.055 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKG--------EVEQASSAFKIVLEA--DRDNVPALLGQACVEFNRG 176 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~a~~~la~~~~~~g 176 (1093)
.+.+..|+.+|++++.++|+++.++..++.++.... +...+...+.+++.. +|.++.++..+|..+...|
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 456779999999999999999999999888876642 345666666666664 7778899999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 001357 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEA 233 (1093)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 233 (1093)
++++|...|++++.++|+ ...|..+|.++...|++++|+..|.+++.++|.++..
T Consensus 435 ~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 435 KTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999994 5689999999999999999999999999999998753
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.55 E-value=1.9e-06 Score=85.41 Aligned_cols=109 Identities=19% Similarity=0.117 Sum_probs=85.0
Q ss_pred HHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCC--
Q 001357 50 YFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHE-- 127 (1093)
Q Consensus 50 y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~-- 127 (1093)
||-...+..+...+...+.... ......++..+|.++...|... +|+..|.+++.+.|+.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~g~~~~~~g~~~-----------~A~~~~~~al~l~~~~~~ 70 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTS-------GEKEAFTYYRDGMSAQSEGEYA-----------EALQNYYEAMRLEIDPYD 70 (168)
T ss_pred cccccccccchhhhhHhccCCc-------hhHHHHHHHHHHHHHHHcCCHH-----------HHHHHHHHHHhccccchh
Confidence 3444455666666655543211 2245677888888888888766 9999999999887653
Q ss_pred -hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001357 128 -PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1093)
Q Consensus 128 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1093)
+.+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|
T Consensus 71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 4589999999999999999999999999999999999999999988333
No 183
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.53 E-value=3.9e-08 Score=99.88 Aligned_cols=244 Identities=13% Similarity=0.053 Sum_probs=154.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHc
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKL 210 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 210 (1093)
+-..|..|+.+|.|++|+.||.+.+..+|.|+..+...|.+|++...|..|...+..++.++... ..+|...|.+-..+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHH
Confidence 34568888888888888888888888888888888888888888888888888888888877666 56677788888888
Q ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 001357 211 GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1093)
Q Consensus 211 g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1093)
|...+|...++.+|.+.|++.+....++.+..-... .-+.+.-|....+. +-
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~-----------~I~~KsT~G~~~A~-----------------Q~ 230 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLARINSLRER-----------KIATKSTPGFTPAR-----------------QG 230 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhh-----------hHHhhcCCCCCccc-----------------cc
Confidence 888888888888888888766654444433211100 00111111111110 00
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 291 TETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1093)
Q Consensus 291 ~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1093)
..+++ ..-.-|..+...|.++.++..|...+...+ ........ +..+.+.-+++.++.-+-+.+.
T Consensus 231 ~~Q~l-----------~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~---~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~ 295 (536)
T KOG4648|consen 231 MIQIL-----------PIKKPGYKFSKKAMRSVPVVDVVSPRATID---DSNQLRIS-DEDIDKIFNSNCGIIEEVKKTN 295 (536)
T ss_pred hhhhc-----------cccCcchhhhhhhccccceeEeeccccccC---ccccCccc-HHHHHHHhhcchhHHHHHHhcC
Confidence 00000 111235556667777777777766554221 11111222 5667777788888888877777
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001357 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE 418 (1093)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~ 418 (1093)
.+|.........+.+-.-.|...++...++.++.+.|.+-.....+..
T Consensus 296 ~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~sr 343 (536)
T KOG4648|consen 296 PKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETETR 343 (536)
T ss_pred CCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhhh
Confidence 666555555555555555667778888888888888776554444433
No 184
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.53 E-value=3.6e-05 Score=77.44 Aligned_cols=199 Identities=16% Similarity=0.186 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhH---HH
Q 001357 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNA---LS 597 (1093)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~ 597 (1093)
.+..+++-|......|++.+|...|+.+...+|.. ..+.+.++..+.+.++++.|+..+++.+.+.|.++.+ ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46678888888888888888888888888888764 5577778888888888888888888888888877663 33
Q ss_pred HhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHH
Q 001357 598 MLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYA 677 (1093)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a 677 (1093)
..|.+ .|..+ .. +..| ......|+..|+.++...|++.++
T Consensus 113 lkgLs------------~~~~i-~~-~~rD--------------------------q~~~~~A~~~f~~~i~ryPnS~Ya 152 (254)
T COG4105 113 LKGLS------------YFFQI-DD-VTRD--------------------------QSAARAAFAAFKELVQRYPNSRYA 152 (254)
T ss_pred HHHHH------------HhccC-Cc-cccC--------------------------HHHHHHHHHHHHHHHHHCCCCcch
Confidence 33333 11100 00 0001 155667888899999999998776
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-HHHHHHH
Q 001357 678 ANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYL 756 (1093)
Q Consensus 678 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~l 756 (1093)
-.....+ ..+... ...--..+|..|.+.|.+..|+.-++.+++.++..+. ...+..+
T Consensus 153 ~dA~~~i--------------~~~~d~--------LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l 210 (254)
T COG4105 153 PDAKARI--------------VKLNDA--------LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARL 210 (254)
T ss_pred hhHHHHH--------------HHHHHH--------HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHH
Confidence 5433222 222111 1223347788999999999999999999999876665 7889999
Q ss_pred HHHHHhhccHHHHHHHHHHHHHhCCCCc
Q 001357 757 ARTHYEAEQWQDCKKSLLRAIHLAPSNY 784 (1093)
Q Consensus 757 a~~~~~~g~~~~A~~~~~~al~~~P~~~ 784 (1093)
..+|+..|-.++|.++-.-+-...|+++
T Consensus 211 ~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 211 EEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 9999999999999887766655666654
No 185
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.51 E-value=2.7e-06 Score=86.36 Aligned_cols=111 Identities=23% Similarity=0.292 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q 001357 271 LNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQ 350 (1093)
Q Consensus 271 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~ 350 (1093)
.+..|.-++..|+|..|...|...++..+.++..+.++||||.+++.+|+|+.|...|..+++..+..|..+.+++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 45556666666777777777777777666666777778888888888888888888888877777777777777788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 351 VQLKLGDFRSALTNFEKVLEIYPDNCETLKA 381 (1093)
Q Consensus 351 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 381 (1093)
++..+|+.++|...|+++++.+|+...+...
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 8888888888888888888777776655443
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.50 E-value=2.1e-06 Score=92.79 Aligned_cols=183 Identities=17% Similarity=0.142 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 001357 391 QIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAH 468 (1093)
Q Consensus 391 ~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~ 468 (1093)
++++|...|.++ |.+| ..+++++|...|.++.......+.... ...+...+.++... ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 566776666664 5677 788999999999999888776443322 35566666666555 999999
Q ss_pred HHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhc-CChHHHHHH
Q 001357 469 QSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQI-HDTVAASVL 547 (1093)
Q Consensus 469 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~ 547 (1093)
.+|++++....... ....-..++..+|.+|... |+++.|+.+
T Consensus 95 ~~~~~A~~~y~~~G-------------------------------------~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~ 137 (282)
T PF14938_consen 95 ECYEKAIEIYREAG-------------------------------------RFSQAAKCLKELAEIYEEQLGDYEKAIEY 137 (282)
T ss_dssp HHHHHHHHHHHHCT--------------------------------------HHHHHHHHHHHHHHHCCTT--HHHHHHH
T ss_pred HHHHHHHHHHHhcC-------------------------------------cHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999987531100 1123467888999999999 999999999
Q ss_pred HHHHHHhcCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCh-------hHHHHhhhhhhcccchHHHHH
Q 001357 548 YRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYP-------NALSMLGDLELKNDDWVKAKE 614 (1093)
Q Consensus 548 ~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~ 614 (1093)
|++++..... ...++..++.++...|+|.+|+..|+++....-.++ ..++..+.+++..|++..|..
T Consensus 138 Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 138 YQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999985421 256788999999999999999999999887542221 245667889999999999999
Q ss_pred HHHHhhhcCCC
Q 001357 615 TFRAASDATDG 625 (1093)
Q Consensus 615 ~~~~~l~~~~~ 625 (1093)
.|++.....|.
T Consensus 218 ~~~~~~~~~~~ 228 (282)
T PF14938_consen 218 ALERYCSQDPS 228 (282)
T ss_dssp HHHHHGTTSTT
T ss_pred HHHHHHhhCCC
Confidence 99999887654
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.50 E-value=4.7e-07 Score=73.23 Aligned_cols=65 Identities=32% Similarity=0.567 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001357 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDA 410 (1093)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~ 410 (1093)
+.+|..++..|++++|+.+|+.++..+|+++.+++.+|.++...|++++|+.+|++++..+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35678888888888888888888888888888888888888888888888888888888888764
No 188
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.50 E-value=0.00058 Score=71.72 Aligned_cols=293 Identities=17% Similarity=0.116 Sum_probs=186.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhH
Q 001357 169 ACVEFNRGRYSDSLEFYKRALQV-HPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEA 247 (1093)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~-~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~ 247 (1093)
|.+..-.|+-..|.+.-.+.-.+ ..+..+-+++.-++.-.-.|+++.|.+-|+.++. +|..- +..|-.+|+.....
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR--llGLRgLyleAqr~ 167 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR--LLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH--HHhHHHHHHHHHhc
Confidence 34444556666666665555433 2223345555556666666777777777666653 33211 22233333333333
Q ss_pred HhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHHHh-cCCHHH
Q 001357 248 AGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTK---SHSYYNLARSYHS-KGDYEK 323 (1093)
Q Consensus 248 ~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~la~~~~~-~g~~~~ 323 (1093)
|..+.|+.+-..+...-|.-+.++.......+..|+++.|+++.+......-..+.. ..+-..-+.+... .-+...
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 336677777777777777777777766777777777777777776655432222221 1122222222111 234667
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH---
Q 001357 324 AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR--- 400 (1093)
Q Consensus 324 A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~--- 400 (1093)
|...-..+++ ..|+++.+-..-+..++..|+..++-.+++.+.+..|. +.++. ..++.+.|+ .++.-++
T Consensus 248 Ar~~A~~a~K---L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~--lY~~ar~gd--ta~dRlkRa~ 319 (531)
T COG3898 248 ARDDALEANK---LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIAL--LYVRARSGD--TALDRLKRAK 319 (531)
T ss_pred HHHHHHHHhh---cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHH--HHHHhcCCC--cHHHHHHHHH
Confidence 7777777776 67888888888999999999999999999999998874 44332 223444554 3444444
Q ss_pred HHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcc
Q 001357 401 KAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEK-GEFESAHQSFKDALGDG 478 (1093)
Q Consensus 401 ~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~ 478 (1093)
++..+.|++....+..+..- ..|++..|...-+.+....|. ..++..++.+--.. |+-.++..++-+++...
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr------es~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR------ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch------hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 44456799999999998877 889999988887777776554 46677778776555 99999999999999854
No 189
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.47 E-value=4.3e-06 Score=76.60 Aligned_cols=86 Identities=22% Similarity=0.308 Sum_probs=74.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRL 201 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~ 201 (1093)
.+..++..|...+..|+|.+|+..|+.+....|.. ..+.+.++.+++..++|.+|+..+++.++++|.+ ...+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 35678889999999999999999999999888764 5788999999999999999999999999999987 356778
Q ss_pred HHHHHHHHcCC
Q 001357 202 GIGLCRYKLGQ 212 (1093)
Q Consensus 202 ~la~~~~~~g~ 212 (1093)
..|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 88888877654
No 190
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.47 E-value=4.6e-06 Score=92.04 Aligned_cols=122 Identities=14% Similarity=0.111 Sum_probs=92.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHH
Q 001357 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLG 214 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 214 (1093)
...+...++++.|+.+|+++.+.+|. +...+|.++...++..+|+.++.+++..+|.+ ..++...+..+...++++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-SELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHH
Confidence 34445557788888888887777654 45567777777778888888888888878877 666777788888888888
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHh
Q 001357 215 KARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEI 263 (1093)
Q Consensus 215 ~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~ 263 (1093)
.|+.+.++++.+.|.+...|..|+.+|...|+ ++.|+..+..+--.
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHhcCcCC
Confidence 88888888888888888888888888888887 88888777755433
No 191
>PRK15331 chaperone protein SicA; Provisional
Probab=98.46 E-value=2.1e-06 Score=80.39 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=93.4
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001357 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1093)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1093)
+.++.....+..|.-++..|++++|..+|+-+...+|.+ ...++++|.|+..++++++|+..|..+..++++++...+.
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN-PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 344456778899999999999999999999999999998 7788999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 237 LAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 237 la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
.|.+++..|+ ...|+..|..++. .|.+.
T Consensus 111 agqC~l~l~~---~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 111 TGQCQLLMRK---AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHhCC---HHHHHHHHHHHHh-CcchH
Confidence 9999999998 8899999988887 45443
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.44 E-value=0.00077 Score=70.85 Aligned_cols=126 Identities=21% Similarity=0.257 Sum_probs=63.6
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHH---HHHHHhCCCcHHHH
Q 001357 303 TKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNF---EKVLEIYPDNCETL 379 (1093)
Q Consensus 303 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~---~~~l~~~p~~~~~~ 379 (1093)
...-+-..-+..++..|+..++-.+++.+.+..+ +|+ +.+.+++.+.|+. ++.-+ .++..+.|++.+..
T Consensus 261 dlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP-HP~-----ia~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~ 332 (531)
T COG3898 261 DLVPAAVVAARALFRDGNLRKGSKILETAWKAEP-HPD-----IALLYVRARSGDT--ALDRLKRAKKLESLKPNNAESS 332 (531)
T ss_pred ccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC-ChH-----HHHHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHH
Confidence 3334444455555555555555555555554211 111 1111222233332 22222 22333456666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 001357 380 KALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALDAFKTART 437 (1093)
Q Consensus 380 ~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~--~~~~~~~A~~~~~~a~~ 437 (1093)
..++...+..|++..|..--+.+....|. ..++..|+.+- ..|+-.+...++-+++.
T Consensus 333 ~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 333 LAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 66666666666666666666666666554 33455555555 44666666666666554
No 193
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.011 Score=69.63 Aligned_cols=578 Identities=12% Similarity=0.057 Sum_probs=294.1
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhH---HHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHH
Q 001357 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVR---YERIAILNALGVYYTYLGKIETKQREKEEHFILA 113 (1093)
Q Consensus 37 ~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~---~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A 113 (1093)
+.++.+-.++|.-|..+=-.+..+++|+.--.-+.-.||-++. .+...+++....+-.+.|.+. +.
T Consensus 675 rqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~Qik-----------Ev 743 (1666)
T KOG0985|consen 675 RQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIK-----------EV 743 (1666)
T ss_pred HhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHH-----------HH
Confidence 4788899999999999988899999999865544433333221 133445555555555555543 33
Q ss_pred HHHHHHHHhcCCCCh---------------------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-------
Q 001357 114 TQYYNKASRIDMHEP---------------------STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPAL------- 165 (1093)
Q Consensus 114 ~~~~~~a~~~~p~~~---------------------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~------- 165 (1093)
..++...--.+|... .-++.--..|+..++..+=++.|-+ +.+|...+.-
T Consensus 744 ERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQ--kvNps~~p~VvG~LLD~ 821 (1666)
T KOG0985|consen 744 ERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQ--KVNPSRTPQVVGALLDV 821 (1666)
T ss_pred HHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHh--hcCCcccchhhhhhhcC
Confidence 333332222222111 1112223345555555555555543 2344321110
Q ss_pred -----HHHHHHH---------------HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHH---------
Q 001357 166 -----LGQACVE---------------FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKA--------- 216 (1093)
Q Consensus 166 -----~~la~~~---------------~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A--------- 216 (1093)
+....+. -+.++..--+.+++..+.....+ +.++..+|.+|...++-.+-
T Consensus 822 dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~d-~a~hnAlaKIyIDSNNnPE~fLkeN~yYD 900 (1666)
T KOG0985|consen 822 DCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQD-PATHNALAKIYIDSNNNPERFLKENPYYD 900 (1666)
T ss_pred CCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCcc-hHHHhhhhheeecCCCChHHhcccCCcch
Confidence 1111112 23344445555666666666555 66677777777665543221
Q ss_pred -HHHHHHHHhhCCCc--------------------HHHHHHHHHHHHHhhhHHhHHHHH--------HHHHHHHHh---C
Q 001357 217 -RQAFQRALQLDPEN--------------------VEALVALAVMDLQANEAAGIRKGM--------EKMQRAFEI---Y 264 (1093)
Q Consensus 217 -~~~~~~al~~~p~~--------------------~~a~~~la~~~~~~~~~~~~~~Al--------~~~~~al~~---~ 264 (1093)
...=.-+-+.+|.- -..+..++.......+..-+.+.+ +++.+.+.. .
T Consensus 901 s~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E 980 (1666)
T KOG0985|consen 901 SKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPE 980 (1666)
T ss_pred hhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCc
Confidence 11111111123321 112334444444444433333333 233333332 1
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhh
Q 001357 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP 344 (1093)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 344 (1093)
..+|.........++..+-..+-+.++++++-..............+.....+ -+....+++..+.-.. +.
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdny--Da------ 1051 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNY--DA------ 1051 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccC--Cc------
Confidence 24566666667778888888888888888774333222222222222222222 2233334444333210 00
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 345 YYGLGQVQLKLGDFRSALTNFEKVLEI----------------------YPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1093)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~----------------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 402 (1093)
-.+|.+....+-|++|...|.+.-.. .-+.+.+|..+|.+..+.|...+|++.|-++
T Consensus 1052 -~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1052 -PDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred -hhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 11334444445555555555432100 0123455666666666666666666555443
Q ss_pred HHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhh
Q 001357 403 AKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWL 481 (1093)
Q Consensus 403 l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 481 (1093)
+++..|.....+. ..|.|++-+.++..+.+.... +.+-..+..+|.+.++..+-..++
T Consensus 1131 -----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E------~~id~eLi~AyAkt~rl~elE~fi---------- 1189 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE------PYIDSELIFAYAKTNRLTELEEFI---------- 1189 (1666)
T ss_pred -----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC------ccchHHHHHHHHHhchHHHHHHHh----------
Confidence 3444555555555 555666555555554443322 112222333344444443322221
Q ss_pred hhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHH
Q 001357 482 TLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDA 561 (1093)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 561 (1093)
..| +..-.-..|.-+...|.++.|.-+|.. +.-
T Consensus 1190 --------------------------------------~gp-N~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN 1222 (1666)
T KOG0985|consen 1190 --------------------------------------AGP-NVANIQQVGDRCFEEKMYEAAKLLYSN--------VSN 1222 (1666)
T ss_pred --------------------------------------cCC-CchhHHHHhHHHhhhhhhHHHHHHHHH--------hhh
Confidence 122 223334566667777888888777764 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHH
Q 001357 562 YLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFA 641 (1093)
Q Consensus 562 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~ 641 (1093)
|..|+..+...|+|..|....+++ ++..+|-..+.++...+.+.-|.-+=-.++-. ..-+-.+.+. |..
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivh-----adeLeeli~~-Yq~ 1291 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNIIVH-----ADELEELIEY-YQD 1291 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEEEe-----hHhHHHHHHH-HHh
Confidence 778888888888888888877764 45667777777777766665544331111111 1112234444 544
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC--CchhHHHHHHH------HHHHhcCCCCCCc
Q 001357 642 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKG--QFDVSKDLFTQ------VQEAASGSVFVQM 713 (1093)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g--~~~~A~~~~~~------~~~~~p~~~~~~~ 713 (1093)
. |.+++-+.+++..+.+.......+.-+|++|.+-. +.-+=+++|-. ++... +.
T Consensus 1292 r------------GyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsRvNipKviRA~------eq 1353 (1666)
T KOG0985|consen 1292 R------------GYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSRVNIPKVIRAA------EQ 1353 (1666)
T ss_pred c------------CcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcchHHHHHHH------HH
Confidence 4 88999999999998888778888888888887543 22233333321 12211 23
Q ss_pred hhHHHHHHHHHHHhcCHHHHHH
Q 001357 714 PDVWINLAHVYFAQGNFALAMK 735 (1093)
Q Consensus 714 ~~~~~~lg~~~~~~g~~~~A~~ 735 (1093)
...|..+..+|.+-..|+.|.-
T Consensus 1354 ahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1354 AHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHHHHHHHhhhhhhHHHH
Confidence 4556666666766666666543
No 194
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.41 E-value=0.0078 Score=67.84 Aligned_cols=187 Identities=9% Similarity=-0.034 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHH
Q 001357 448 IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTV 527 (1093)
Q Consensus 448 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 527 (1093)
...|..........|+++...-.|++++--| ......
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c-------------------------------------------A~Y~ef 333 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC-------------------------------------------ALYDEF 333 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-------------------------------------------hhhHHH
Confidence 3556666677778899999999999988744 235678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcc
Q 001357 528 LFNLARLLEQIHDTVAASVLYRLILFKY-QDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKN 606 (1093)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 606 (1093)
|...++.....|+..-|...+..+.+.+ |..+...+.-+.+....|++..|...++......|+...+-...+.+..+.
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh
Confidence 8888888888899999988888777754 666777778888888889999999999999988898888887778888888
Q ss_pred cchHHHH---HHHHHhhhcCCCCChHH--HHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 001357 607 DDWVKAK---ETFRAASDATDGKDSYA--TLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGA 681 (1093)
Q Consensus 607 g~~~~A~---~~~~~~l~~~~~~d~~~--~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~l 681 (1093)
|+.+.+. ..+.....-........ ++......|.-. ++.+.|...+.+++...|.+-..+..+
T Consensus 414 ~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~------------~d~~~a~~~l~~~~~~~~~~k~~~~~~ 481 (577)
T KOG1258|consen 414 GNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR------------EDADLARIILLEANDILPDCKVLYLEL 481 (577)
T ss_pred cchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh------------cCHHHHHHHHHHhhhcCCccHHHHHHH
Confidence 8888877 33333332221112211 111222212222 788889999999999999888877777
Q ss_pred HHHHHhcC
Q 001357 682 GVVLAEKG 689 (1093)
Q Consensus 682 a~~~~~~g 689 (1093)
..+....+
T Consensus 482 ~~~~~~~~ 489 (577)
T KOG1258|consen 482 IRFELIQP 489 (577)
T ss_pred HHHHHhCC
Confidence 66655443
No 195
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.41 E-value=6.7e-06 Score=75.35 Aligned_cols=109 Identities=12% Similarity=0.202 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-HHH
Q 001357 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQI 752 (1093)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 752 (1093)
.+..++.-|......|++.+|+..|+.+....|.+.+ ...+.+.+|.+|+..|++..|+..+++.++.+|.+++ +-+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4567788889999999999999999999999997765 4688999999999999999999999999999888887 788
Q ss_pred HHHHHHHHHhhcc---------------HHHHHHHHHHHHHhCCCCc
Q 001357 753 LLYLARTHYEAEQ---------------WQDCKKSLLRAIHLAPSNY 784 (1093)
Q Consensus 753 l~~la~~~~~~g~---------------~~~A~~~~~~al~~~P~~~ 784 (1093)
++..|.+++.... ...|...|++++...|++.
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 9999999998876 7889999999999999874
No 196
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.40 E-value=0.0059 Score=65.92 Aligned_cols=439 Identities=14% Similarity=0.028 Sum_probs=226.7
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001357 105 EKEEHFILATQYYNKASRIDMHEP-----STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1093)
Q Consensus 105 ~r~~~~~~A~~~~~~a~~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1093)
++++++++|..+|.++.......+ .++-++....+-..+.+.-...+...-+..|.++...+..|...++.+.|.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 456667799999999876654443 344455566677788888888888888888999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC----CcHHHHHHHHHH
Q 001357 180 DSLEFYKRALQVHPSC--------------PGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DP----ENVEALVALAVM 240 (1093)
Q Consensus 180 ~Al~~~~~al~~~p~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p----~~~~a~~~la~~ 240 (1093)
+|+..+..-...-... +-..-...+.|+..+|++.+++..+.+.+.. -| =+.+.+..+..+
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 9999887655441111 0111234688999999999999999988763 22 244444443332
Q ss_pred HHHhhhHHhHHHHHHHHHHHH-----HhCCCc-HHHHHHHHHHHHHcC-ChHH---HHHHHHHHHhccCCCCCchHHHHH
Q 001357 241 DLQANEAAGIRKGMEKMQRAF-----EIYPYC-AMALNYLANHFFFTG-QHFL---VEQLTETALAVTNHGPTKSHSYYN 310 (1093)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al-----~~~p~~-~~~~~~la~~~~~~g-~~~~---A~~~~~~al~~~~~~~~~~~~~~~ 310 (1093)
+.+. +|-.+. .+.|+. .++.+.+-.++.... -|.+ ...++..+....-..|.
T Consensus 177 lsrS-----------YfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~------- 238 (549)
T PF07079_consen 177 LSRS-----------YFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK------- 238 (549)
T ss_pred HhHH-----------HHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH-------
Confidence 2221 111111 112221 111122211111111 1111 11222222111000010
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHH
Q 001357 311 LARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-----YPDNCETLKALGHI 385 (1093)
Q Consensus 311 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~ 385 (1093)
...--+-+++..++... ..|.+..+.-.+-.-... +.+++...++.+... ...-....-.+-..
T Consensus 239 -----e~l~~~mq~l~~We~~y----v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~ 307 (549)
T PF07079_consen 239 -----ERLPPLMQILENWENFY----VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSF 307 (549)
T ss_pred -----hhccHHHHHHHHHHhhc----cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 00111112222222211 223333322222222222 444444444433322 11112333444445
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH------HHH--hcCCHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 001357 386 YVQLGQIEKAQELLRKAAKIDPRDAQAFIDLG------ELL--ISSDTGAALDAFKTARTLLKKAGEE--VPIEVLNNIG 455 (1093)
Q Consensus 386 ~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la------~~~--~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~la 455 (1093)
..+.++...|..++.-+..++|+.....-.+. .+. ....+..-..++. ........+.. .-+..+...+
T Consensus 308 ~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~-lwe~~qs~DiDrqQLvh~L~~~A 386 (549)
T PF07079_consen 308 KVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLN-LWEEIQSYDIDRQQLVHYLVFGA 386 (549)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHH-HHHHHHhhcccHHHHHHHHHHHH
Confidence 56678888888888877777887642221111 111 0011111111111 11111111100 1144556667
Q ss_pred HHHHHcCC-HHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHH
Q 001357 456 VIHFEKGE-FESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARL 534 (1093)
Q Consensus 456 ~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~ 534 (1093)
.-+++.|. -++|+.+++.++... +.+...... ...
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft-------------------------------------------~yD~ec~n~-v~~ 422 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFT-------------------------------------------NYDIECENI-VFL 422 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhc-------------------------------------------cccHHHHHH-HHH
Confidence 77888887 788899998888732 112211110 000
Q ss_pred HHhcCChHHHH--HHHHHHHH---------hcC---ChHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHcCCChhHHHH
Q 001357 535 LEQIHDTVAAS--VLYRLILF---------KYQ---DYVDAYLRLA--AIAKARNNLQLSIELVNEALKVNGKYPNALSM 598 (1093)
Q Consensus 535 ~~~~g~~~~A~--~~~~~~l~---------~~p---~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 598 (1093)
+.+ ..|..|+ ..+.+.+. +.| .+.+.-+.|+ ..+...|++.++.-+..-..++.| ++.++..
T Consensus 423 fvK-q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RL 500 (549)
T PF07079_consen 423 FVK-QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRL 500 (549)
T ss_pred HHH-HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHH
Confidence 000 0111111 11111111 111 2233444444 446788999999999999999999 8999999
Q ss_pred hhhhhhcccchHHHHHHHHHh
Q 001357 599 LGDLELKNDDWVKAKETFRAA 619 (1093)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~ 619 (1093)
+|.+.+...+|.+|..++..+
T Consensus 501 lGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 501 LGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhhHHHHHHHHHhC
Confidence 999999999999999999854
No 197
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.013 Score=69.03 Aligned_cols=227 Identities=18% Similarity=0.120 Sum_probs=133.6
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhh
Q 001357 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDL 602 (1093)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 602 (1093)
+.+.+|..+|.+....|...+|++.|-+ .+++..|.....+....|.|++-+.++..+-+... .+.+-..+..+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHH
Confidence 3556788888888888888888877754 35566777777778888888888877776655432 23334445555
Q ss_pred hhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 001357 603 ELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAG 682 (1093)
Q Consensus 603 ~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la 682 (1093)
|.+.++..+-.... .+| +..-.-..|+- ++.. +.|+.|.-+|..+ .-|-.++
T Consensus 1176 yAkt~rl~elE~fi-----~gp--N~A~i~~vGdr-cf~~------------~~y~aAkl~y~~v--------SN~a~La 1227 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-----AGP--NVANIQQVGDR-CFEE------------KMYEAAKLLYSNV--------SNFAKLA 1227 (1666)
T ss_pred HHHhchHHHHHHHh-----cCC--CchhHHHHhHH-Hhhh------------hhhHHHHHHHHHh--------hhHHHHH
Confidence 66666655433322 122 33333446666 6665 7777777777543 3456677
Q ss_pred HHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Q 001357 683 VVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE 762 (1093)
Q Consensus 683 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~ 762 (1093)
..+...|.|..|....+++ ++..+|-..+......+.|.-|.-+ ... ---.+.-+-.|...|..
T Consensus 1228 ~TLV~LgeyQ~AVD~aRKA----------ns~ktWK~VcfaCvd~~EFrlAQiC-----GL~-iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARKA----------NSTKTWKEVCFACVDKEEFRLAQIC-----GLN-IIVHADELEELIEYYQD 1291 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhc----------cchhHHHHHHHHHhchhhhhHHHhc-----Cce-EEEehHhHHHHHHHHHh
Confidence 7788888888887776666 3344555554444444444433221 000 00013334445555666
Q ss_pred hccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH
Q 001357 763 AEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 799 (1093)
Q Consensus 763 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~~ 799 (1093)
.|-+++-+..++.++-+........--||.+|.++-.
T Consensus 1292 rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp 1328 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKP 1328 (1666)
T ss_pred cCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCH
Confidence 6666666666666666655555555556666655543
No 198
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=98.35 E-value=0.011 Score=66.84 Aligned_cols=394 Identities=14% Similarity=0.064 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHcCCHHHHHHHHHH
Q 001357 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL-GIGLCRYKLGQLGKARQAFQR 222 (1093)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~-~la~~~~~~g~~~~A~~~~~~ 222 (1093)
...+...|...+...|-....|...|..-++.|....+.++|++++..-|-+ ..+|. .++.+....|+...-...|++
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~S-vdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLS-VDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 4666777777888888888888888888888899999999999988888866 44443 344455566777777788888
Q ss_pred HHhhCCCc---HHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc------CChHHHHHHHHH
Q 001357 223 ALQLDPEN---VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT------GQHFLVEQLTET 293 (1093)
Q Consensus 223 al~~~p~~---~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~ 293 (1093)
|+.....+ ...|-.+......+++ +..-...|.+.++.--.....++..-.-+... -..+++..+-..
T Consensus 140 A~~~vG~dF~S~~lWdkyie~en~qks---~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~ 216 (577)
T KOG1258|consen 140 AKSYVGLDFLSDPLWDKYIEFENGQKS---WKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSD 216 (577)
T ss_pred HHHhcccchhccHHHHHHHHHHhcccc---HHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhh
Confidence 88765443 2334444443333333 55666666666654221111111111111111 011111111111
Q ss_pred HHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhH-------HHHHHHHHHcCCHHHHHHHH
Q 001357 294 ALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPY-------YGLGQVQLKLGDFRSALTNF 365 (1093)
Q Consensus 294 al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~-------~~la~~~~~~g~~~~A~~~~ 365 (1093)
.... ......+... +.....+..... .+...... ...-.++...-.....+..|
T Consensus 217 ~~~~---------------~~~~~~~~~~---e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~f 278 (577)
T KOG1258|consen 217 VAER---------------SKITHSQEPL---EELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGF 278 (577)
T ss_pred HHhh---------------hhcccccChh---HHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 1000 0000000111 111111110000 00000000 01112233333444444555
Q ss_pred HHHHHh-----CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001357 366 EKVLEI-----YP---DNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTAR 436 (1093)
Q Consensus 366 ~~~l~~-----~p---~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~ 436 (1093)
+..++. .| .....|......-...|+++...-.|++++--.......|+..+... ..|+..-|-..+..+.
T Consensus 279 E~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 279 EEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred hhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 554442 12 22345555566666677777777777777665556666777777766 5666666666655555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCC
Q 001357 437 TLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGN 516 (1093)
Q Consensus 437 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 516 (1093)
++.-. ..+.+...-+.+.-..|++..|...++.....
T Consensus 359 ~i~~k----~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--------------------------------------- 395 (577)
T KOG1258|consen 359 KIHVK----KTPIIHLLEARFEESNGNFDDAKVILQRIESE--------------------------------------- 395 (577)
T ss_pred hhcCC----CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh---------------------------------------
Confidence 54322 12444444555556667777777777766652
Q ss_pred CcCCCCchHHHHHHHHHHHHhcCChHHHHH---HHHHHHHh--cCCh-HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHc
Q 001357 517 HVELPWNKVTVLFNLARLLEQIHDTVAASV---LYRLILFK--YQDY-VDAYLRLAAI-AKARNNLQLSIELVNEALKVN 589 (1093)
Q Consensus 517 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~~l~~--~p~~-~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~ 589 (1093)
. |....+-...+.+....|+.+.+.. ++.....- ++.- ...+...+.. +.-.++.+.|...+.+++...
T Consensus 396 ---~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 396 ---Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred ---C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 2 4444444455555556666666652 22222211 1111 1222222322 334456667777777777777
Q ss_pred CCChhHHHHhhhhhhcc
Q 001357 590 GKYPNALSMLGDLELKN 606 (1093)
Q Consensus 590 p~~~~~~~~l~~~~~~~ 606 (1093)
|.+...+..+..+....
T Consensus 472 ~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 472 PDCKVLYLELIRFELIQ 488 (577)
T ss_pred CccHHHHHHHHHHHHhC
Confidence 77666666655554443
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.33 E-value=1.7e-06 Score=70.67 Aligned_cols=62 Identities=32% Similarity=0.547 Sum_probs=28.3
Q ss_pred HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001357 174 NRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1093)
Q Consensus 174 ~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1093)
..|+|++|+..|++++..+|++ ..+++.+|.||+..|++++|...+.+++..+|+++.++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3444444444444444444444 3444444444444444444444444444444444443333
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.32 E-value=1.4e-05 Score=72.36 Aligned_cols=98 Identities=27% Similarity=0.318 Sum_probs=82.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN---VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAIRLG 202 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~ 202 (1093)
+.+++.+|.++-..|+.++|+.+|++++...+.. ..+++.+|.++...|++++|+.++++++...|++ ...+...
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 3578889999999999999999999999875443 5688999999999999999999999999988872 2566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 001357 203 IGLCRYKLGQLGKARQAFQRALQ 225 (1093)
Q Consensus 203 la~~~~~~g~~~~A~~~~~~al~ 225 (1093)
++.++...|+.++|+..+-.++.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999998887764
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.32 E-value=1.1e-05 Score=73.08 Aligned_cols=98 Identities=27% Similarity=0.265 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKAL 382 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l 382 (1093)
.+++.+|.++-..|+.++|+.+|++++......+....+++.+|.++...|++++|+..++..+...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 356667777777777777777777777643333444556777777777777777777777777776666 55666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 001357 383 GHIYVQLGQIEKAQELLRKAA 403 (1093)
Q Consensus 383 a~~~~~~g~~~~A~~~l~~~l 403 (1093)
+.++...|+.++|+..+-.++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777766554
No 202
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=1.4e-05 Score=88.17 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=85.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHh
Q 001357 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG 249 (1093)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~ 249 (1093)
.++...++++.|+.+|+++...+|.. ...++.++...++..+|+..+.+++...|.+...+...+..++..++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pev----~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~--- 249 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPEV----AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK--- 249 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCcH----HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---
Confidence 33444567777777777777776653 34467777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETAL 295 (1093)
Q Consensus 250 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 295 (1093)
++.|+...++++...|.+...|..|+.+|...|+++.|+..++.+-
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777777777777777777777777777776666443
No 203
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.29 E-value=2.1e-06 Score=70.19 Aligned_cols=65 Identities=23% Similarity=0.339 Sum_probs=41.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001357 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1093)
Q Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 204 (1093)
+..|++++|+..|++++..+|++..+++.+|.+++..|++++|..++.+++..+|++ +.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN-PEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH-HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH-HHHHHHHh
Confidence 456666666666666666666666666666666666666666666666666666665 44444333
No 204
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=1e-05 Score=76.55 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1093)
-.-|.-++..|+|.+|..-|..+|...|..+ ..|...|.++++++.++.|+..+.+++.++|.+ ..++...+.+
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAea 177 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEA 177 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHH
Confidence 3456667777777777777777777666542 345556666666666666666666666666666 4445556666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1093)
|.++..++.|+.-|.++++.+|....+.-..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 6666666666666666666666554443333
No 205
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.25 E-value=0.012 Score=63.30 Aligned_cols=420 Identities=12% Similarity=0.075 Sum_probs=225.4
Q ss_pred eEEEeCCCCCCChhHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHH
Q 001357 14 EVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYY 93 (1093)
Q Consensus 14 ~v~~~~~~lp~~~~~~~~~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y 93 (1093)
.|+---+.||-|--.|.+-+++.|.+.-.|+++...|-.+|.+++-.+.+++...+-| +++ -+|..
T Consensus 16 kvae~~~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp--~~~------------~aw~l 81 (660)
T COG5107 16 KVAEPSDNIHGDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP--IME------------HAWRL 81 (660)
T ss_pred cccCcccCCCchHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc--ccc------------HHHHH
Confidence 3444568999988899999999999999999999999999999999999999987633 221 24444
Q ss_pred HHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHH
Q 001357 94 TYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVP 163 (1093)
Q Consensus 94 ~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~ 163 (1093)
...|... ..+|.....+|.+++...- +.+.|... ..|.+.-+ .-+|.++.-...-.+|....
T Consensus 82 y~s~ELA------~~df~svE~lf~rCL~k~l-~ldLW~lY-l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~ 153 (660)
T COG5107 82 YMSGELA------RKDFRSVESLFGRCLKKSL-NLDLWMLY-LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSEN 153 (660)
T ss_pred Hhcchhh------hhhHHHHHHHHHHHHhhhc-cHhHHHHH-HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccc
Confidence 4455544 4466677788888876533 24444432 22222211 22333333333335677666
Q ss_pred HHHHHHHHHHH---------cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-------------cCCHHHHHHHHH
Q 001357 164 ALLGQACVEFN---------RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK-------------LGQLGKARQAFQ 221 (1093)
Q Consensus 164 a~~~la~~~~~---------~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~-------------~g~~~~A~~~~~ 221 (1093)
.|...+..+-. +.+.+.-...|.+++..--.+...+|...-..-.. .--+-.|+..|+
T Consensus 154 ~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yq 233 (660)
T COG5107 154 YWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQ 233 (660)
T ss_pred hHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 66665554422 23445556667777765434433333221111111 112455666666
Q ss_pred HHHhh-------CCCcHH-----------HHHHHHHHHHHhhh---HHhHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 222 RALQL-------DPENVE-----------ALVALAVMDLQANE---AAGIRKG-MEKMQRAFEIYPYCAMALNYLANHFF 279 (1093)
Q Consensus 222 ~al~~-------~p~~~~-----------a~~~la~~~~~~~~---~~~~~~A-l~~~~~al~~~p~~~~~~~~la~~~~ 279 (1093)
....+ +|-+.. -|......-...+- .+-..+- --.+.+++...|-.+.+|+.....+.
T Consensus 234 e~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~ 313 (660)
T COG5107 234 EIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLI 313 (660)
T ss_pred HHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 55443 222111 12222222221110 0001222 22456666667777777777777777
Q ss_pred HcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH---cC
Q 001357 280 FTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK---LG 356 (1093)
Q Consensus 280 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~---~g 356 (1093)
..++-+.|+....+.+... +...+.++.+|....+-+....+|+++++.+. ..+..+..-.. .|
T Consensus 314 ~isd~q~al~tv~rg~~~s------psL~~~lse~yel~nd~e~v~~~fdk~~q~L~-------r~ys~~~s~~~s~~D~ 380 (660)
T COG5107 314 GISDKQKALKTVERGIEMS------PSLTMFLSEYYELVNDEEAVYGCFDKCTQDLK-------RKYSMGESESASKVDN 380 (660)
T ss_pred hccHHHHHHHHHHhcccCC------CchheeHHHHHhhcccHHHHhhhHHHHHHHHH-------HHHhhhhhhhhccccC
Confidence 7777777777777665322 23555666666666666666666666654221 01111111111 22
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 001357 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGE--LLISSDTGAALDAFKT 434 (1093)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~--~~~~~~~~~A~~~~~~ 434 (1093)
+++..-+++-+-. ....-+++.+...-.+..-.+.|..+|-++-+..-....+++.-+. .+..+++.-|..+|+-
T Consensus 381 N~e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifel 457 (660)
T COG5107 381 NFEYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFEL 457 (660)
T ss_pred CccccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHH
Confidence 2322222211111 1223344444444445555667777777765543222333333333 3366777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 435 ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALG 476 (1093)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 476 (1093)
.+..+++. +...+..-..+...++-..|..+|+.++.
T Consensus 458 Gl~~f~d~-----~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 458 GLLKFPDS-----TLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHhCCCc-----hHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 66665542 33333344455666777777777776665
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.23 E-value=6.3e-06 Score=68.48 Aligned_cols=60 Identities=33% Similarity=0.475 Sum_probs=30.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 136 QLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
.+|+..++|+.|+.+++.++..+|+++..+..+|.+++..|++.+|+..|++++...|++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 344445555555555555555555555555555555555555555555555555555544
No 207
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.22 E-value=0.014 Score=63.06 Aligned_cols=132 Identities=12% Similarity=0.089 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHH----HHH--hcC-CchhHHHHHHHHHH-HhcCCCCCCchhHHHHHH--HHH
Q 001357 655 THLEKAKELYTRVIVQHTSNLYAANGAGV----VLA--EKG-QFDVSKDLFTQVQE-AASGSVFVQMPDVWINLA--HVY 724 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~----~~~--~~g-~~~~A~~~~~~~~~-~~p~~~~~~~~~~~~~lg--~~~ 724 (1093)
+.-++|+.+++.+++..|.+...-+..-. .|. -.+ .+..-+. ++.+++ .+-.++...+...-..|+ ..+
T Consensus 394 ~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlk-Le~fi~e~gl~~i~i~e~eian~LaDAEyL 472 (549)
T PF07079_consen 394 QCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLK-LEDFITEVGLTPITISEEEIANFLADAEYL 472 (549)
T ss_pred CccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 44789999999999999988755443211 111 111 1222221 222222 222233334455555554 447
Q ss_pred HHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC----cchhhHHHHH
Q 001357 725 FAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN----YTLRFDAGVA 793 (1093)
Q Consensus 725 ~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~----~~~~~~la~~ 793 (1093)
+.+|+|.++.-+-.=..+ -.|.+.++..+|.+++...+|.+|..++.. +-|++ ..+.-.+++|
T Consensus 473 ysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALC 539 (549)
T ss_pred HhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHH
Confidence 789999998866443333 345899999999999999999999999874 34433 3445556665
No 208
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=2.3e-05 Score=74.19 Aligned_cols=114 Identities=20% Similarity=0.197 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCP----GAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
+-.-|.-+|..|+|.+|..-|..+|...|... ..++.+.|.|+.+++.++.|+....++++++|.+..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44556777888888888888888888887762 34566788888888888888888888888888888888888888
Q ss_pred HHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001357 241 DLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFT 281 (1093)
Q Consensus 241 ~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~ 281 (1093)
|.+... ++.|+..|.+++..+|....+.-..+.+--..
T Consensus 178 yek~ek---~eealeDyKki~E~dPs~~ear~~i~rl~~~i 215 (271)
T KOG4234|consen 178 YEKMEK---YEEALEDYKKILESDPSRREAREAIARLPPKI 215 (271)
T ss_pred HHhhhh---HHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence 888766 88888888888888888777666665554333
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.00022 Score=70.71 Aligned_cols=161 Identities=16% Similarity=0.206 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCChhHHHHhhhhhhcccchHHHHHHHHHhh
Q 001357 542 VAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GKYPNALSMLGDLELKNDDWVKAKETFRAAS 620 (1093)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 620 (1093)
+..+..+++-+ ....+.++.++.-.|.|.-....+.+.++.+ |..+.+...+|.+.++.|+...|..+|+.+-
T Consensus 166 ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 166 ESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred hhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44455555433 2344555566666677777777777777766 5566677777777777777777777777443
Q ss_pred hcCCC-----CChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHH
Q 001357 621 DATDG-----KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSK 695 (1093)
Q Consensus 621 ~~~~~-----~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~ 695 (1093)
+.... .......+++.+ |.-. +++..|...|.+++..+|.++.+.++.|.|+.-.|+...|+
T Consensus 240 k~~~kL~~~q~~~~V~~n~a~i-~lg~------------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 240 KVTQKLDGLQGKIMVLMNSAFL-HLGQ------------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred HHHhhhhccchhHHHHhhhhhh-eecc------------cchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence 32111 122333344555 5555 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 001357 696 DLFTQVQEAASGSVFVQMPDVWINLAHV 723 (1093)
Q Consensus 696 ~~~~~~~~~~p~~~~~~~~~~~~~lg~~ 723 (1093)
..++.+.+..|+.. .+..+.+||-.+
T Consensus 307 K~~e~~~~~~P~~~--l~es~~~nL~tm 332 (366)
T KOG2796|consen 307 KQLEAMVQQDPRHY--LHESVLFNLTTM 332 (366)
T ss_pred HHHHHHhccCCccc--hhhhHHHHHHHH
Confidence 99999999998653 234566666544
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.19 E-value=0.00011 Score=68.99 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 109 HFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLE-ADRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 109 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
.+.+|...+.. .|.. ...+.+|..+...|++.+|...|++++. ....++..+++++...+..+++..|...++.
T Consensus 75 ~~Rea~~~~~~----ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 75 HLREATEELAI----APTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred HHHHHHHHHhh----chhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34455554444 4543 4578899999999999999999999986 3567889999999999999999999999999
Q ss_pred HHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 188 ALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 188 al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
+.+.+|.. .+...+.+|..+..+|.+..|...|+.++...| .+.+....+..+..+|.
T Consensus 150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr 208 (251)
T COG4700 150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGR 208 (251)
T ss_pred HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcc
Confidence 99998865 466788899999999999999999999999888 45667777777888775
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.0007 Score=67.31 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=28.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhh
Q 001357 38 APLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEY 74 (1093)
Q Consensus 38 ~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~ 74 (1093)
..+.+|...-.++.+...+++|..-|+..-+.+..++
T Consensus 67 ~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl 103 (366)
T KOG2796|consen 67 DSLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDL 103 (366)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcce
Confidence 3456888888899999999999998888765554433
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.17 E-value=1e-05 Score=67.24 Aligned_cols=70 Identities=27% Similarity=0.501 Sum_probs=58.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
..+++..++|++|+.++++++..+|.+ +..++..|.|+..+|++.+|+..|+++++..|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 467788888888888888888888887 7778888888888888888888888888888888877665553
No 213
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.12 E-value=1.6e-06 Score=88.43 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
+|.|.+|+.+|.+++..+|.++..+.+++.+|++...|..|...+..++.++.....+|...+.+-..+|...+|.+.++
T Consensus 110 QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E 189 (536)
T KOG4648|consen 110 QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCE 189 (536)
T ss_pred ccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHH
Confidence 44455999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHhCCCC
Q 001357 187 RALQVHPSC 195 (1093)
Q Consensus 187 ~al~~~p~~ 195 (1093)
.+|.+.|+.
T Consensus 190 ~vL~LEP~~ 198 (536)
T KOG4648|consen 190 TVLALEPKN 198 (536)
T ss_pred HHHhhCccc
Confidence 999999997
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.12 E-value=0.022 Score=61.31 Aligned_cols=421 Identities=12% Similarity=0.040 Sum_probs=223.1
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
.+..-++-+|++...|+.+..-+-.+|.+++-.+.|+++..-.|--+.+|......-...++|..-..+|.+++...-+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 45566788999999999999999999999999999999998888888888877777777889998889999988765443
Q ss_pred hHHHHHHHHHHHHHcC-----C----HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh------HHhHHHHHHHHHHH
Q 001357 196 PGAIRLGIGLCRYKLG-----Q----LGKARQAFQRALQLDPENVEALVALAVMDLQANE------AAGIRKGMEKMQRA 260 (1093)
Q Consensus 196 ~~~~~~~la~~~~~~g-----~----~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~------~~~~~~Al~~~~~a 260 (1093)
++|...-..-.+.+ + .-+|.+..-.+.-.+|.....|...+..+..-.. ...++.-...|.++
T Consensus 110 --dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 110 --DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred --hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 33332211111111 1 1222222222333567777777766655443221 12245555566666
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-
Q 001357 261 FEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN- 336 (1093)
Q Consensus 261 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~- 336 (1093)
+..--++..-+ -.+|+.-..-.+++-.. ....| -|-.|...|+.......
T Consensus 188 l~tP~~nlekl---------W~dy~~fE~e~N~~TarKfvge~sp-----------------~ym~ar~~yqe~~nlt~G 241 (660)
T COG5107 188 LQTPMGNLEKL---------WKDYENFELELNKITARKFVGETSP-----------------IYMSARQRYQEIQNLTRG 241 (660)
T ss_pred HcCccccHHHH---------HHHHHHHHHHHHHHHHHHHhcccCH-----------------HHHHHHHHHHHHHHHhcc
Confidence 65433322111 11222222222221110 00001 12223333333221100
Q ss_pred ---CCCCch-----------hhHHHHHHHHHH-----cCC-HHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 001357 337 ---KPHEFI-----------FPYYGLGQVQLK-----LGD-FRSAL-TNFEKVLEIYPDNCETLKALGHIYVQLGQIEKA 395 (1093)
Q Consensus 337 ---~~~~~~-----------~~~~~la~~~~~-----~g~-~~~A~-~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 395 (1093)
.+|.+. .-|+++...-.. .|+ ...-+ -.+++++...|-.+++|+.........++-+.|
T Consensus 242 l~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 242 LSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred ccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHH
Confidence 000000 012222222111 111 11112 235556666666777777777777777777777
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHH
Q 001357 396 QELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFE---KGEFESAHQSF 471 (1093)
Q Consensus 396 ~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~ 471 (1093)
+....+.+...|. ..+.++.+| ...+.+....+|+++...+... +.++..-.. -|+++...+++
T Consensus 322 l~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~---------ys~~~s~~~s~~D~N~e~~~Ell 389 (660)
T COG5107 322 LKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK---------YSMGESESASKVDNNFEYSKELL 389 (660)
T ss_pred HHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH---------HhhhhhhhhccccCCccccHHHH
Confidence 7777666555554 566666777 4455554445555544332211 000000000 11111111111
Q ss_pred HHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001357 472 KDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551 (1093)
Q Consensus 472 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 551 (1093)
-+-. ....-++..+...-.+..-.+.|..+|.++
T Consensus 390 ~kr~----------------------------------------------~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 390 LKRI----------------------------------------------NKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred HHHH----------------------------------------------hhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0000 011223333333333444456777777776
Q ss_pred HHhcCChHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhc
Q 001357 552 LFKYQDYVDAYLRLAAI-AKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA 622 (1093)
Q Consensus 552 l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 622 (1093)
-+..--...+|..-|.+ +...|++..|..+|+-.+...|+++......-..+...++-..|...|++++..
T Consensus 424 rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 424 RKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred hccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 55332223333333333 456788888999999999999988887777777788888888888888877653
No 215
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.12 E-value=0.0006 Score=75.05 Aligned_cols=118 Identities=19% Similarity=0.092 Sum_probs=84.4
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 001357 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHP 193 (1093)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p 193 (1093)
++..+++.+|.+...+...+..+..+|+..+|+.++..++-..|.. -.+++.+|.++.+.|...+|--++..++.-.|
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 3344555566555544444555556788888888888888776654 35678888888888888888777777776666
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 001357 194 SCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEAL 234 (1093)
Q Consensus 194 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 234 (1093)
.. ...++.++.++.++|.+......|..+.+..|....+.
T Consensus 281 ~~-t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~ 320 (886)
T KOG4507|consen 281 FF-TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAI 320 (886)
T ss_pred cc-cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHH
Confidence 55 44477888888888888888888888888888654443
No 216
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.09 E-value=0.00068 Score=63.83 Aligned_cols=126 Identities=16% Similarity=0.130 Sum_probs=63.3
Q ss_pred HHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCC--
Q 001357 596 LSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS-- 673 (1093)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-- 673 (1093)
.+.++......|++.+|...|.+++.-.-.+|...++.+++. .+.. +++..|...++++.+.+|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A-qfa~------------~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA-QFAI------------QEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH-HHhh------------ccHHHHHHHHHHHhhcCCccC
Confidence 344555555555555555555555543333344455555555 4444 5555555555555555543
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHH
Q 001357 674 NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNC 740 (1093)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 740 (1093)
.+.....+|.+|...|.+..|...|+.++..+| .+.....++..+.++|+..+|..-|...
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp------g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYP------GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC------CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 334444445555555555555555555555553 3444444555555555555554444333
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.08 E-value=1.1e-05 Score=67.96 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=56.6
Q ss_pred CchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Q 001357 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-----AQILLYLARTHYEAEQWQDCKKSLLRAIHLA 780 (1093)
Q Consensus 712 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~l~~la~~~~~~g~~~~A~~~~~~al~~~ 780 (1093)
+...++.++|.+|..+|++++|+.+|++++.....-++ +.++..+|.+|...|++++|++++++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45678899999999999999999999999977422221 6678899999999999999999999998753
No 218
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.04 E-value=0.00033 Score=61.69 Aligned_cols=98 Identities=22% Similarity=0.182 Sum_probs=86.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHH
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCR 207 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~la~~~ 207 (1093)
+-..|..+...|+++.|++.|.+++...|.++.+|...|..+.-+|+.++|+..+.+++.+.... ....+...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 44568888999999999999999999999999999999999999999999999999999986433 234577899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCC
Q 001357 208 YKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 208 ~~~g~~~~A~~~~~~al~~~p 228 (1093)
..+|+.+.|+.-|+.+-++..
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCC
Confidence 999999999999999887754
No 219
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.041 Score=60.51 Aligned_cols=101 Identities=15% Similarity=0.031 Sum_probs=78.8
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHcCCChhHHHHh
Q 001357 522 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA--RNNLQLSIELVNEALKVNGKYPNALSML 599 (1093)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~l 599 (1093)
+...+.-..+-..+...|-+..|...|......-|-....+..+..+-.. .-+..-+..+|+.++.....++.+|..+
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y 536 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDY 536 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 34455555666777888889999999999988888877777666655322 2247788999999999988999999999
Q ss_pred hhhhhcccchHHHHHHHHHhhhc
Q 001357 600 GDLELKNDDWVKAKETFRAASDA 622 (1093)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~l~~ 622 (1093)
-......|..+.+-..|-++++.
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHhhccCCCcccccHHHHHHHHh
Confidence 99888999888887777777663
No 220
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0035 Score=61.53 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh-----
Q 001357 527 VLFNLARLLEQI-HDTVAASVLYRLILFKYQD------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN----- 594 (1093)
Q Consensus 527 ~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----- 594 (1093)
.+..+|.+|..- .+++.|+..|+++-..... -..+++..+......++|.+|+..|++.....-+++.
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 445667777654 7889999999988765432 2457777888888899999999999998887665554
Q ss_pred --HHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 595 --ALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 595 --~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
-++.-|.|++-..+.-.+...+++.....|.
T Consensus 195 KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 195 KDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 3445577777778887888888888787775
No 221
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.94 E-value=0.11 Score=62.95 Aligned_cols=287 Identities=15% Similarity=0.104 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHhcCCC----ChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCh
Q 001357 110 FILATQYYNKASRIDMH----EPSTWVGKGQLLL-AKGEVEQASSAFKIVLEADRD--N----VPALLGQACVEFNRGRY 178 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~----~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~a~~~la~~~~~~g~~ 178 (1093)
...|+++++-+++..+- ...+.+.+|.+++ ...+++.|...+.+++.+... . ..+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 34788888888742221 3457778898888 778999999999999877633 2 23456778888888877
Q ss_pred HHHHHHHHHHHHhCCC---ChHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhC--CCcHHHH----HHHHHHHHHhhhH
Q 001357 179 SDSLEFYKRALQVHPS---CPGAIRLGIG--LCRYKLGQLGKARQAFQRALQLD--PENVEAL----VALAVMDLQANEA 247 (1093)
Q Consensus 179 ~~Al~~~~~al~~~p~---~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~----~~la~~~~~~~~~ 247 (1093)
. |+..+++.+...-. ......+.+. ..+...+++..|+..++.+.... +.++.+. +..+.+....+.
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~- 194 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS- 194 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC-
Confidence 7 99999999887544 2222233332 22323379999999999988765 3444332 223444555554
Q ss_pred HhHHHHHHHHHHHHHh------C----CCcHHHHHHHHH--HHHHcCChHHHHHHHHHHH---hccCCCC----------
Q 001357 248 AGIRKGMEKMQRAFEI------Y----PYCAMALNYLAN--HFFFTGQHFLVEQLTETAL---AVTNHGP---------- 302 (1093)
Q Consensus 248 ~~~~~Al~~~~~al~~------~----p~~~~~~~~la~--~~~~~g~~~~A~~~~~~al---~~~~~~~---------- 302 (1093)
...+++.++++... + +....++..+.. ++...|++..+...++.+- ......+
T Consensus 195 --~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~ 272 (608)
T PF10345_consen 195 --PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGS 272 (608)
T ss_pred --chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCee
Confidence 45566655555321 1 222344444433 4566777766655544433 2111110
Q ss_pred ----------------C----------chHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-------CCc--------
Q 001357 303 ----------------T----------KSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKP-------HEF-------- 341 (1093)
Q Consensus 303 ----------------~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~-------- 341 (1093)
. ..-+|+.-|......+..+.|.+++.++++..... +..
T Consensus 273 i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~ 352 (608)
T PF10345_consen 273 IPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASER 352 (608)
T ss_pred EEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHh
Confidence 0 01234445667777788889999998887643211 111
Q ss_pred --------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC------cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 342 --------IFPYYGLGQVQLKLGDFRSALTNFEKVLEIY---PD------NCETLKALGHIYVQLGQIEKAQELLR 400 (1093)
Q Consensus 342 --------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1093)
....+..+.+.+-.+++..|...+..+.... |. .+.+++..|..+...|+.+.|..+|.
T Consensus 353 ~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 353 IQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 1123456677778899999999888777652 22 36788889999999999999999998
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.92 E-value=4.4e-05 Score=83.50 Aligned_cols=69 Identities=25% Similarity=0.339 Sum_probs=47.1
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPA---LLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
.+|+++..|+++|.+|+..|+|++|+..|++++.++|++..+ |+.+|++|..+|++++|+..|++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356666677777777777777777777777777777766643 666777777777777777777766665
No 223
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0014 Score=67.45 Aligned_cols=172 Identities=15% Similarity=0.140 Sum_probs=134.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhc-CCCCChHHHHHhHhHH--HHH
Q 001357 565 LAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDA-TDGKDSYATLSLGNWN--YFA 641 (1093)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~d~~~~~~l~~~~--y~~ 641 (1093)
-+.+....|++.+|.....+.+.-.|.+..++..--.+++.+|+...-...+++++.. .+....|+++. |... ...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~-GmyaFgL~E 187 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVH-GMYAFGLEE 187 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHH-HHHHhhHHH
Confidence 3455667899999999999999999999999999999999999999999999999887 44433344331 2110 223
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 001357 642 ALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLA 721 (1093)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg 721 (1093)
. |-+++|.+..+++++++|.+.++...++.++...|++.++.++..+--..-..+. .....-|.+.+
T Consensus 188 ~------------g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~-mlasHNyWH~A 254 (491)
T KOG2610|consen 188 C------------GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW-MLASHNYWHTA 254 (491)
T ss_pred h------------ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh-HHHhhhhHHHH
Confidence 3 9999999999999999999999999999999999999999999887655432111 12334567788
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhhcCCCCH
Q 001357 722 HVYFAQGNFALAMKMYQNCLRKFYYNTDA 750 (1093)
Q Consensus 722 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 750 (1093)
.++...+.|+.|+.+|..-+-+-....|.
T Consensus 255 l~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 88999999999999998766543344453
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.85 E-value=2.2e-05 Score=66.14 Aligned_cols=73 Identities=23% Similarity=0.412 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhc--CCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 001357 672 TSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS--GSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1093)
Q Consensus 672 p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 744 (1093)
|+-..+++++|.+|...|++++|+.+|+++++... ++..+....++.++|.+|..+|++++|+.+|+++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 44567889999999999999999999999998731 12222457789999999999999999999999999864
No 225
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0026 Score=62.47 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHc
Q 001357 391 QIEKAQELLRKAAKIDPRD------AQAFIDLGELL--ISSDTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEK 461 (1093)
Q Consensus 391 ~~~~A~~~l~~~l~~~p~~------~~~~~~la~~~--~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~ 461 (1093)
+..+|+..+++++.+..+. ...++.++.+| ...++++|+.+|+++-..+........ ...+...+..-...
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 5555555555555443222 23345778888 557999999999999888765322222 35566677778889
Q ss_pred CCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCCh
Q 001357 462 GEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDT 541 (1093)
Q Consensus 462 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 541 (1093)
++|.+|+..|++.......... .....-..++.-|.|+.-..+.
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~L------------------------------------LKys~KdyflkAgLChl~~~D~ 211 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNL------------------------------------LKYSAKDYFLKAGLCHLCKADE 211 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchH------------------------------------HHhHHHHHHHHHHHHhHhcccH
Confidence 9999999999988763210000 0011223444556677766787
Q ss_pred HHHHHHHHHHHHhcCChHH
Q 001357 542 VAASVLYRLILFKYQDYVD 560 (1093)
Q Consensus 542 ~~A~~~~~~~l~~~p~~~~ 560 (1093)
-.+...+++....+|...+
T Consensus 212 v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 212 VNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHhcCCcccc
Confidence 7777778888888887544
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.83 E-value=7.7e-05 Score=81.61 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=65.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001357 157 ADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1093)
Q Consensus 157 ~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1093)
.+|+++.+++.+|.+|+..|+|++|+..|++++.++|++.. .+|+++|.||..+|++++|+.+|.+++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999999832 46999999999999999999999999997
No 227
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.12 Score=59.59 Aligned_cols=607 Identities=12% Similarity=0.071 Sum_probs=284.6
Q ss_pred CCCChhHHHHHHHhcCCCh--HHHHHHHHHHHHcCCHHHHHHHHHhcC-CCc--hhhhhh-hhHHHHHHHHHHHHHHHHH
Q 001357 22 LPRDASDILDILKAEQAPL--DLWLIIAREYFKQGKVEQFRQILEEGS-SPE--IDEYYA-DVRYERIAILNALGVYYTY 95 (1093)
Q Consensus 22 lp~~~~~~~~~l~~e~~~~--~~~~~la~~y~~~g~~~~a~~~l~~a~-~~~--~~~~~~-~~~~~~~~~~~~la~~y~~ 95 (1093)
+.++...+-.+..++.-+- -+-+.....||-.|.|++|+...-.+- ..+ ....|. ......+..+...+.-.+.
T Consensus 39 Isd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~ 118 (929)
T KOG2062|consen 39 ISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYK 118 (929)
T ss_pred hhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444331 244778899999999999999877763 111 111121 1112222222222211111
Q ss_pred hchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH-HHhC--CCCHHHHHHHHHHH
Q 001357 96 LGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIV-LEAD--RDNVPALLGQACVE 172 (1093)
Q Consensus 96 ~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a-l~~~--p~~~~a~~~la~~~ 172 (1093)
.-.. +..--++-..++++++...-.+...|..+|..+.- ..+..++.+ +..+ +.+...++.+....
T Consensus 119 ~~~~------~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~-----~rld~ie~Ail~~d~~~~~~~yll~l~~s~ 187 (929)
T KOG2062|consen 119 NPEQ------KSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFET-----RRLDIIEEAILKSDSVIGNLTYLLELLISL 187 (929)
T ss_pred Cccc------cCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhh-----hhHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 1000 00001123344555555544455555555554321 123334443 2222 23344455555555
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHH
Q 001357 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRK 252 (1093)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~ 252 (1093)
.....| -.+++..++...-+.+..-++.+..||..+.+.+.+...+++.++. ++...-+.++.-+......+-...
T Consensus 188 v~~~ef--R~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e--~~~llayQIAFDL~esasQefL~~ 263 (929)
T KOG2062|consen 188 VNNREF--RNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKE--DDLLLAYQIAFDLYESASQEFLDS 263 (929)
T ss_pred HhhHHH--HHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhc--chhhhHHHHHHHHhhccCHHHHHH
Confidence 443222 2334444444332221122677899999999999999999999872 222222222221111111000111
Q ss_pred HHHHHH-----------HHHHhCCCcHHHHHHHHHHHHHcCChHH-HHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCC
Q 001357 253 GMEKMQ-----------RAFEIYPYCAMALNYLANHFFFTGQHFL-VEQLTETALAVTNHGPTKSHSYYNLARSYHSKGD 320 (1093)
Q Consensus 253 Al~~~~-----------~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~ 320 (1093)
-+..+. +.+.+-.....+-.. ...++..+..+- .++-....++. ........++..++..|-
T Consensus 264 v~~~l~~d~~~de~p~~kii~ILSGe~tik~~-l~FL~~~N~tD~~iL~~iK~s~r~-----sv~H~A~~iAN~fMh~GT 337 (929)
T KOG2062|consen 264 VLDRLPADDARDEKPMEKIISILSGEETIKLY-LQFLLRHNNTDLLILEEIKESVRN-----SVCHTATLIANAFMHAGT 337 (929)
T ss_pred HHHHcccccccccChHHHHHHHhcCchHHHHH-HHHHHHcCCchHHHHHHHHHHHHH-----hhhhHHHHHHHHHHhcCC
Confidence 111111 111111111111111 222222222221 11111111110 111233345666666653
Q ss_pred HHH-----HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC----cHHHHHHHHHHHHHc
Q 001357 321 YEK-----AGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY--PD----NCETLKALGHIYVQL 389 (1093)
Q Consensus 321 ~~~-----A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~----~~~~~~~la~~~~~~ 389 (1093)
..+ -+.++.++.. -....+--.+| .+..|+..+|.+++...+-.. |. ...+++.+|.++...
T Consensus 338 T~D~FlR~NL~WlskAtN-----WaKFtAtAsLG--vIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~h 410 (929)
T KOG2062|consen 338 TSDTFLRNNLDWLSKATN-----WAKFTATASLG--VIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANH 410 (929)
T ss_pred cchHHHHhchhHHhhcch-----Hhhhhhhhhcc--eeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCc
Confidence 222 2222222221 00011111223 245788888888887776442 11 236888999988888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 001357 390 GQIEKAQELLRKAAKIDPRDAQAF-IDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESA 467 (1093)
Q Consensus 390 g~~~~A~~~l~~~l~~~p~~~~~~-~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 467 (1093)
|+- ..+++...++...+....+ ..||.-+ ..|- .-...|++....+...........-..+|.+....++.+.-
T Consensus 411 G~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS--a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eai 486 (929)
T KOG2062|consen 411 GRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGS--ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAI 486 (929)
T ss_pred Ccc--HHHHHHHHHHhccchhhhhhhhhhccchhccc--ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHH
Confidence 765 7888888777654332221 1122211 2222 22345555555443321111123334555555555554433
Q ss_pred HHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHH
Q 001357 468 HQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVL 547 (1093)
Q Consensus 468 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 547 (1093)
..++.-+.+. .-....--..+|..+...|+.++|-.+
T Consensus 487 edm~~Ya~ET-------------------------------------------QHeki~RGl~vGiaL~~ygrqe~Ad~l 523 (929)
T KOG2062|consen 487 EDMLTYAQET-------------------------------------------QHEKIIRGLAVGIALVVYGRQEDADPL 523 (929)
T ss_pred HHHHHHhhhh-------------------------------------------hHHHHHHHHHHhHHHHHhhhhhhhHHH
Confidence 3344444331 112333334456666777888889888
Q ss_pred HHHHHHhc-CC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 548 YRLILFKY-QD-YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 548 ~~~~l~~~-p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
.++++... |- .....+.++..|.-.|+..--..++.-++.-..++..-...++.-+.-..+++....+..-+.+.+..
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~ 603 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNP 603 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcCh
Confidence 88877532 22 12345667777888887665555554444333333333333333344455666666666555444433
Q ss_pred CChH-HHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcC-----CchhHHH
Q 001357 626 KDSY-ATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNL---YAANGAGVVLAEKG-----QFDVSKD 696 (1093)
Q Consensus 626 ~d~~-~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~a~~~la~~~~~~g-----~~~~A~~ 696 (1093)
+-.| +.+.||.. + .. .-..+|+.+++.+.. +|.+. .++..++.+++++. ++..-++
T Consensus 604 HVRyGaA~ALGIa-C-AG------------tG~~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk 668 (929)
T KOG2062|consen 604 HVRYGAAMALGIA-C-AG------------TGLKEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRK 668 (929)
T ss_pred hhhhhHHHHHhhh-h-cC------------CCcHHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhcccccCchHHHHHH
Confidence 2222 44455544 2 22 335678888888777 66643 46677777777654 3344445
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 001357 697 LFTQVQEAASGSVFVQMPDVWINLAHVYF 725 (1093)
Q Consensus 697 ~~~~~~~~~p~~~~~~~~~~~~~lg~~~~ 725 (1093)
.|.+++.. .+.+++..+|-++.
T Consensus 669 ~l~kvI~d-------KhEd~~aK~GAilA 690 (929)
T KOG2062|consen 669 QLEKVIND-------KHEDGMAKFGAILA 690 (929)
T ss_pred HHHHHhhh-------hhhHHHHHHHHHHH
Confidence 55555442 34566666666643
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.76 E-value=0.00047 Score=60.70 Aligned_cols=97 Identities=20% Similarity=0.123 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC--HHHHHHHH
Q 001357 680 GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLA 757 (1093)
Q Consensus 680 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la 757 (1093)
.-|.++.+.|+++.|++.|.+++...| ..+.+|.|.+..+.-+|+..+|+.-+.++++....... ...+..-|
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P-----~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAP-----ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcc-----cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 346777788888888888888888887 77888888888888888888888888888887543332 55666778
Q ss_pred HHHHhhccHHHHHHHHHHHHHhCC
Q 001357 758 RTHYEAEQWQDCKKSLLRAIHLAP 781 (1093)
Q Consensus 758 ~~~~~~g~~~~A~~~~~~al~~~P 781 (1093)
.+|...|+-+.|..-|+.+-++..
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCC
Confidence 888888888888888887777653
No 229
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.76 E-value=0.00065 Score=73.07 Aligned_cols=135 Identities=19% Similarity=0.247 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFN-RGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
+|+.......+.+..+.|..+|.+++...+.+...|...|.+.+. .++...|..+|+.+++..|.+ ..+|......+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~-~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD-PDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Confidence 444555555555555556666666554333445555555555444 334444666666666655555 444555555555
Q ss_pred HcCCHHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 209 KLGQLGKARQAFQRALQLDPENV---EALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 209 ~~g~~~~A~~~~~~al~~~p~~~---~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
..|+.+.|+.+|++++..-|... ..|......-...|+ ......+..++.+..|...
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTTS-
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhhhh
Confidence 55666666666666655544333 345555555555555 5555566666666655533
No 230
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.76 E-value=0.0047 Score=68.33 Aligned_cols=115 Identities=13% Similarity=0.007 Sum_probs=77.5
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 152 ~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
...++..|.+......-+.....+|+..+|+.++..++-..|.. ...+++.+|.++.+.|...+|--++..|+.-.|.-
T Consensus 203 ~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~ 282 (886)
T KOG4507|consen 203 HEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFF 282 (886)
T ss_pred HHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccc
Confidence 34445555554444444444445688888888888877765443 34567778888888888888877777777766665
Q ss_pred HHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHH
Q 001357 231 VEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAM 269 (1093)
Q Consensus 231 ~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~ 269 (1093)
..-++.++.++...++ +...+..|..+.+..|....
T Consensus 283 t~n~y~l~~i~aml~~---~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 283 TSNYYTLGNIYAMLGE---YNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred cccceeHHHHHHHHhh---hhhhhhhhhhhhccCcchhH
Confidence 5567777888877777 67777777777777765443
No 231
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.75 E-value=0.0009 Score=71.96 Aligned_cols=126 Identities=11% Similarity=0.177 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHH
Q 001357 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAE-KGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A 733 (1093)
+..+.|..+|.++++..+.+...|...|.+... .++...|..+|+..++..| .++.+|..+...+...|+.+.|
T Consensus 15 ~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~~~~~~Y~~~l~~~~d~~~a 89 (280)
T PF05843_consen 15 EGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDPDFWLEYLDFLIKLNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHTT-HHHH
T ss_pred CChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHhCcHHHH
Confidence 779999999999997666677888888888666 5666669999999999998 7899999999999999999999
Q ss_pred HHHHHHHHHhhcCCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcc
Q 001357 734 MKMYQNCLRKFYYNT-DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYT 785 (1093)
Q Consensus 734 ~~~~~~al~~~~~~~-~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 785 (1093)
..+|++++...+... ...+|......-...|+.+...++.+++.+..|.+..
T Consensus 90 R~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 90 RALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999998854444 4568888888888999999999999999999998644
No 232
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.71 E-value=0.0004 Score=65.85 Aligned_cols=109 Identities=21% Similarity=0.175 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE----------VEQASSAFKIVLEADRDNVPALLGQACVEFNRGR 177 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 177 (1093)
-.|+.|.+.++.....+|.+++.++.-|.+++...+ +++|+.-|+.++.++|+...++..+|.++...+.
T Consensus 5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 356788888998899999999999988888776633 4667777777778888888888888877766542
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
+ .|+. .. ....|++|..+|+++...+|+|......|...
T Consensus 85 l-------------~~d~-~~----------A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 85 L-------------TPDT-AE----------AEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp H----------------H-HH----------HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred h-------------cCCh-HH----------HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 1 1111 00 00124566666677777777666655555444
No 233
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.66 E-value=0.021 Score=67.92 Aligned_cols=172 Identities=17% Similarity=0.184 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC---
Q 001357 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAK-----GEVEQASSAFKIVLEA-----DRDNVPALLGQACVEFNRG--- 176 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g--- 176 (1093)
...|..+|+.+... .+..+.+.+|.+|+.- .+.+.|+.+|..+... .-.++.+...+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45788888887654 4677777888887765 5789999999888761 1125667888888888743
Q ss_pred --ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hhHHhH
Q 001357 177 --RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG---QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGI 250 (1093)
Q Consensus 177 --~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~ 250 (1093)
++..|+.+|.++-.....+ ..+.+|.|+..-. ++..|..+|..+... .+..+.+.++.++..- |-..+.
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~---a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPD---AQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred cccHHHHHHHHHHHHhcCCch---HHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence 6788999998888776544 5677888887766 567888888888654 5778888888777653 223347
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CChHHHHHH
Q 001357 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFT-GQHFLVEQL 290 (1093)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~ 290 (1093)
..|..++.++...+ ++.+...++.++... +.+..+...
T Consensus 381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~ 419 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALAL 419 (552)
T ss_pred HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHH
Confidence 88888888888877 344444444433322 444444333
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0072 Score=59.82 Aligned_cols=128 Identities=12% Similarity=0.090 Sum_probs=82.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhh
Q 001357 418 ELLISSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDAS 496 (1093)
Q Consensus 418 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 496 (1093)
.++...+++.|+.+|++++.++...+.. ...+.+...+.++.+...+.+|-..|.+-......
T Consensus 119 k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~---------------- 182 (308)
T KOG1585|consen 119 KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK---------------- 182 (308)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH----------------
Confidence 3446678899999999999887764332 22577778888999999999998888765442110
Q ss_pred hhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHc
Q 001357 497 ASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK----YQDYVDAYLRLAAIAKAR 572 (1093)
Q Consensus 497 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~ 572 (1093)
. ...+.....+.....++....++..|...|+...++ .|+...+..+|...| ..
T Consensus 183 --------------~-------~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~ 240 (308)
T KOG1585|consen 183 --------------C-------DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DE 240 (308)
T ss_pred --------------H-------hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-cc
Confidence 0 012223344555566677777899999888876542 234455555555444 55
Q ss_pred CCHHHHHHHHH
Q 001357 573 NNLQLSIELVN 583 (1093)
Q Consensus 573 g~~~~A~~~~~ 583 (1093)
|+.++...++.
T Consensus 241 gD~E~~~kvl~ 251 (308)
T KOG1585|consen 241 GDIEEIKKVLS 251 (308)
T ss_pred CCHHHHHHHHc
Confidence 67776665554
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0027 Score=65.43 Aligned_cols=164 Identities=12% Similarity=0.076 Sum_probs=124.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHH
Q 001357 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI-YPDN---CETLKALGH 384 (1093)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~---~~~~~~la~ 384 (1093)
...+.+....|++.+|-..+.+.++ ..|....++..--.+++..|+...-...+++++.. +|+. ..+.-.++.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~---d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLD---DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHH---hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 3445566778888888888888888 55666666666677888889888888888888866 5544 455666788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 001357 385 IYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE 463 (1093)
Q Consensus 385 ~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~ 463 (1093)
.+...|-+++|.+.-+++++++|.+..+...++.++ ..+++.++.++..+........ ......-|...+.++...+.
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s-~mlasHNyWH~Al~~iE~ae 262 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS-WMLASHNYWHTALFHIEGAE 262 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh-hHHHhhhhHHHHHhhhcccc
Confidence 888889999999999999999999999999999999 8888988888776544333221 11112345567888888999
Q ss_pred HHHHHHHHHHHHh
Q 001357 464 FESAHQSFKDALG 476 (1093)
Q Consensus 464 ~~~A~~~~~~al~ 476 (1093)
|+.|+.+|..-+-
T Consensus 263 ye~aleIyD~ei~ 275 (491)
T KOG2610|consen 263 YEKALEIYDREIW 275 (491)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999987654
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.63 E-value=0.088 Score=61.05 Aligned_cols=120 Identities=20% Similarity=0.183 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCCchhhHHHHHHHHHHcCCHHHH
Q 001357 283 QHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN-KPHEFIFPYYGLGQVQLKLGDFRSA 361 (1093)
Q Consensus 283 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~la~~~~~~g~~~~A 361 (1093)
....+..++....... |..+-..+..|+++...|+.++|+..|++++..-. -..-...+++.++.++....+|++|
T Consensus 248 ~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3445666666666443 55556677777777777778888877777663111 1122235678888888889999999
Q ss_pred HHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Q 001357 362 LTNFEKVLEIYPDN-CETLKALGHIYVQLGQI-------EKAQELLRKAAKI 405 (1093)
Q Consensus 362 ~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~l~~~l~~ 405 (1093)
..+|..+.+.+.-. ....+..|.|+...++. ++|..+|.++-..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99998888865443 34556677888888888 8888888888654
No 237
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.62 E-value=0.0011 Score=62.93 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH---HHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001357 144 VEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS---DSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAF 220 (1093)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~---~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 220 (1093)
|+.|.+.++.....+|.++.+++.-|.++..+.++. ++.. -+++|+.-|
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~----------------------------miedAisK~ 58 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK----------------------------MIEDAISKF 58 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH----------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH----------------------------HHHHHHHHH
Confidence 456666666666666666666666666555443321 1111 135666677
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHhhh--------HHhHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001357 221 QRALQLDPENVEALVALAVMDLQANE--------AAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1093)
Q Consensus 221 ~~al~~~p~~~~a~~~la~~~~~~~~--------~~~~~~Al~~~~~al~~~p~~~~~~~~l 274 (1093)
+.+|.++|+...++..+|.++...+. ...+++|..+|+++...+|.+......|
T Consensus 59 eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 59 EEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 77788888888888888877776654 1348899999999999999998655444
No 238
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.61 E-value=0.0017 Score=71.20 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------------------C--
Q 001357 106 KEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-----------------------D-- 160 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----------------------~-- 160 (1093)
|+.+.+.-++.-.+|+.++|+.+.+|+.++.-. ..-..+|..+|+++++... .
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 345566788899999999999999999887532 2335666666666654211 0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHHHHHHH
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQL-DPENVEALVALA 238 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~la 238 (1093)
.+.+...+|.|..+.|+.++|++.|+.+++..|. +...++..+..++..++.+.++...+.+.-.+ -|......+.-+
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaA 337 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAA 337 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHH
Confidence 1344577899999999999999999999998876 35678999999999999999999998886433 255555555555
Q ss_pred HHHHHh-hh------------HHhHHHHHHHHHHHHHhCCCcHHHHH
Q 001357 239 VMDLQA-NE------------AAGIRKGMEKMQRAFEIYPYCAMALN 272 (1093)
Q Consensus 239 ~~~~~~-~~------------~~~~~~Al~~~~~al~~~p~~~~~~~ 272 (1093)
.+..+. ++ ...-..|++.+.++++.||..+..+.
T Consensus 338 LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 338 LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 544331 11 11124577888999999998875543
No 239
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0097 Score=58.94 Aligned_cols=159 Identities=13% Similarity=0.082 Sum_probs=95.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHH
Q 001357 421 ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (1093)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1093)
....+.++..+++++..+....|.+.....-...+.-....-+.+.|+.+|++++..-.. +.
T Consensus 83 e~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~-----~d------------- 144 (308)
T KOG1585|consen 83 ELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE-----DD------------- 144 (308)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc-----cc-------------
Confidence 334444455555555554444444433333333333344556888999999998873110 00
Q ss_pred HhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH------hcCChHHHHHHHHHHHHHcCC
Q 001357 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF------KYQDYVDAYLRLAAIAKARNN 574 (1093)
Q Consensus 501 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~~~la~~~~~~g~ 574 (1093)
....-...+-..++++.+...+.+|...+.+-.. ..|+....+.....+++-..+
T Consensus 145 -------------------r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D 205 (308)
T KOG1585|consen 145 -------------------RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD 205 (308)
T ss_pred -------------------hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH
Confidence 0112334566678888999999998877765433 234444456666666777789
Q ss_pred HHHHHHHHHHHHHHc----CCChhHHHHhhhhhhcccchHHHHHHHH
Q 001357 575 LQLSIELVNEALKVN----GKYPNALSMLGDLELKNDDWVKAKETFR 617 (1093)
Q Consensus 575 ~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (1093)
|..|..+++...++. |.+..+..+|... +..|+.+++...+.
T Consensus 206 yv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 206 YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHHHHc
Confidence 999999999877654 4555566666665 35677766665554
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.59 E-value=0.0039 Score=68.52 Aligned_cols=187 Identities=18% Similarity=0.199 Sum_probs=115.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcc
Q 001357 568 IAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEK 647 (1093)
Q Consensus 568 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~ 647 (1093)
-..+..+...-++...+|++++|+++.++..++.= ...-..+|..+|+++++.... .++.. ....
T Consensus 177 ~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~-------~lg~s-~~~~----- 241 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEA-------SLGKS-QFLQ----- 241 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHH-------hhchh-hhhh-----
Confidence 34455677777777888888888887777766642 233466777777777664321 11111 0000
Q ss_pred cCchHHHHHHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHH
Q 001357 648 RAPKLEATHLEKAKELYTRVIVQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYF 725 (1093)
Q Consensus 648 ~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~ 725 (1093)
...-+-..+...+. .+++-..+|.+.-+.|+.++|+..|+.+++..|.. ++..++.+|..+++
T Consensus 242 ------------~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~---~~l~IrenLie~LL 306 (539)
T PF04184_consen 242 ------------HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL---DNLNIRENLIEALL 306 (539)
T ss_pred ------------cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc---chhhHHHHHHHHHH
Confidence 00001111111222 24556788999999999999999999999877732 46779999999999
Q ss_pred HhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh-hcc---------------HHHHHHHHHHHHHhCCCCcc
Q 001357 726 AQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYE-AEQ---------------WQDCKKSLLRAIHLAPSNYT 785 (1093)
Q Consensus 726 ~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~-~g~---------------~~~A~~~~~~al~~~P~~~~ 785 (1093)
..+.|.++..++.+. .....+..+.+.|..+-.-.+ .|+ -..|.+.+++|++.+|.-+.
T Consensus 307 elq~Yad~q~lL~kY-dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 307 ELQAYADVQALLAKY-DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hcCCHHHHHHHHHHh-ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 999999998886553 211123335555544443322 111 13377899999999997653
No 241
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00061 Score=66.94 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=87.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHH
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTG 426 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~ 426 (1093)
-|..++....|..|+.+|.+++.++|..+..+.+.+.||++..+++.+.....+++++.|+....++.+|..+ ....++
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 4555666677888888888888888888888888888888888888888888888888888888888888877 777888
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001357 427 AALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 468 (1093)
Q Consensus 427 ~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 468 (1093)
.|+..+.++..+...........+...|-.+-...=...++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~ 137 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEK 137 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHH
Confidence 888888888777766554444455554444433333333333
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.55 E-value=0.0002 Score=52.14 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQAC 170 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 170 (1093)
|.+|+.+|..|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3567788888888888888888888888888888888887764
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.55 E-value=0.0019 Score=74.61 Aligned_cols=173 Identities=16% Similarity=0.125 Sum_probs=123.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhc
Q 001357 44 LIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRI 123 (1093)
Q Consensus 44 ~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~ 123 (1093)
+.+....--.|+-+.++++|..+..... ...-+..+..|+.+..-.+-...+ . .......|..++......
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~-------i~~~la~L~LL~y~~~~~~~~~~~-~-~~~~~~~a~~lL~~~~~~ 262 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSEN-------IRSPLAALVLLWYHLVVPSFLGID-G-EDVPLEEAEELLEEMLKR 262 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCC-------cchHHHHHHHHHHHHHHHHHcCCc-c-cCCCHHHHHHHHHHHHHh
Confidence 3444444456888999999998765321 111233333333222222222211 1 345566899999999999
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI 199 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~ 199 (1093)
.|+.+..++..|.++...|+.++|+..|+.++..... ...+++.++.++..+++|++|...|..+.+.+.-+...+
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y 342 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFY 342 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHH
Confidence 9999999999999999999999999999988743222 245688899999999999999999999999887777777
Q ss_pred HHHHHHHHHHcCCH-------HHHHHHHHHHHh
Q 001357 200 RLGIGLCRYKLGQL-------GKARQAFQRALQ 225 (1093)
Q Consensus 200 ~~~la~~~~~~g~~-------~~A~~~~~~al~ 225 (1093)
.+..|.|+..+|+. ++|...|.++-.
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88899999999988 666666655543
No 244
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0011 Score=65.30 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
.+.|..|+..|.+++.++|..+..|..++.++++..+++.+.....++++++|+.+.+.+.+|.++.....|++|+..++
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 34566888899999999998888888899999998899999999999999999888889999999888899999999888
Q ss_pred HHHHh
Q 001357 187 RALQV 191 (1093)
Q Consensus 187 ~al~~ 191 (1093)
++..+
T Consensus 103 ra~sl 107 (284)
T KOG4642|consen 103 RAYSL 107 (284)
T ss_pred HHHHH
Confidence 88654
No 245
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.26 Score=54.56 Aligned_cols=96 Identities=14% Similarity=0.236 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 001357 145 EQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQ-LGKARQAFQRA 223 (1093)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a 223 (1093)
..-..+|+.++...+.++..|........+.+.+.+--.+|.+++..+|++ +++|...|...+.-+. .+.|+..|.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~-~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN-PDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-chhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 445667777777777777777777777777777777777888888888877 6677777766666655 77777777788
Q ss_pred HhhCCCcHHHHHHHHHHH
Q 001357 224 LQLDPENVEALVALAVMD 241 (1093)
Q Consensus 224 l~~~p~~~~a~~~la~~~ 241 (1093)
|+.+|+++..|...-.+-
T Consensus 167 LR~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFRME 184 (568)
T ss_pred hhcCCCChHHHHHHHHHH
Confidence 777777777766554443
No 246
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.45 E-value=0.00029 Score=51.25 Aligned_cols=42 Identities=40% Similarity=0.517 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 198 AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 198 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
.+++.+|.+|..+|++++|+..|+++++.+|+++.+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356677777777777777777777777777777777777664
No 247
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.42 E-value=0.06 Score=64.03 Aligned_cols=180 Identities=23% Similarity=0.203 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh--hhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHH
Q 001357 213 LGKARQAFQRALQLDPENVEALVALAVMDLQA--NEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQL 290 (1093)
Q Consensus 213 ~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~--~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 290 (1093)
...|...|+.+... .+..+...+|.++..- |...+.+.|+.+|..+...
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~--------------------------- 278 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAES--------------------------- 278 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH---------------------------
Confidence 45677777776544 5677777777776654 3344577788877777653
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC---CHHHHH
Q 001357 291 TETALAVTNHGPTKSHSYYNLARSYHSKG-----DYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG---DFRSAL 362 (1093)
Q Consensus 291 ~~~al~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~ 362 (1093)
+.++... ..+.+.+.+|.+|.... ++..|+.+|.++.. ...+.+.+.+|.++.... ++..|.
T Consensus 279 ~~~~a~~-----~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-----~g~~~a~~~lg~~~~~g~~~~d~~~A~ 348 (552)
T KOG1550|consen 279 FKKAATK-----GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-----LGNPDAQYLLGVLYETGTKERDYRRAF 348 (552)
T ss_pred HHHHHhh-----cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-----cCCchHHHHHHHHHHcCCccccHHHHH
Confidence 1111111 12246667777777643 67778888888875 344566788888877665 567888
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 001357 363 TNFEKVLEIYPDNCETLKALGHIYVQL----GQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALDAFKTA 435 (1093)
Q Consensus 363 ~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~--~~~~~~~A~~~~~~a 435 (1093)
.+|..+... .+..+.+.++.||..- -+...|..+|.++...+ .+.+...++.++ ..+.+..+...+...
T Consensus 349 ~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 349 EYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHH
Confidence 888888764 4778888888887654 36788888888888776 455555666655 235666555544433
No 248
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.37 E-value=0.064 Score=60.52 Aligned_cols=70 Identities=13% Similarity=0.024 Sum_probs=52.6
Q ss_pred CCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCC-CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001357 264 YPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHG-PTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1093)
Q Consensus 264 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1093)
.......+..++.+....|.++.|...+..+....... ...+.+.+..+..+...|+..+|+..+...+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33456677888888888888888888888877643222 22567778888888888888888888887776
No 249
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.36 E-value=0.25 Score=53.23 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhh----------CCC----cHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhC
Q 001357 200 RLGIGLCRYKLG-QLGKARQAFQRALQL----------DPE----NVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIY 264 (1093)
Q Consensus 200 ~~~la~~~~~~g-~~~~A~~~~~~al~~----------~p~----~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~ 264 (1093)
++..|......+ +++.|...+++++++ .|+ ...++..++.+++..+......+|...+..+-...
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 444444444444 555555555544443 111 12446677777777777667777888887777777
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC
Q 001357 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN 299 (1093)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 299 (1093)
|+.+.++..-..+....++.+.+...+.+++....
T Consensus 118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 118 GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 87777776656666667777788888877776543
No 250
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.025 Score=58.43 Aligned_cols=152 Identities=18% Similarity=0.076 Sum_probs=87.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLC 206 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 206 (1093)
....-+..+.-....|++.+|...|..++...|.+..+.+.++.++...|+.+.|..++...-.................
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 34445666777778888888888888888888888888888888888888888887777654332222211110001122
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcC
Q 001357 207 RYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYP--YCAMALNYLANHFFFTG 282 (1093)
Q Consensus 207 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p--~~~~~~~~la~~~~~~g 282 (1093)
+.+.....+. ..+++.+..+|++..+.+.++..+...|+ .+.|+..+-..++.+- .+..+...+..++...|
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2222222221 12334445566666666667766666666 6666666666655542 23333344444443333
No 251
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.31 E-value=0.00031 Score=76.62 Aligned_cols=89 Identities=16% Similarity=0.193 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
...|..|+..|.+++.++|+.+..+-.++.+++..++|..|+.-+.++++.+|....+|+..|..+...+.+.+|+..|+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~ 96 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLE 96 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhCCCC
Q 001357 187 RALQVHPSC 195 (1093)
Q Consensus 187 ~al~~~p~~ 195 (1093)
......|+.
T Consensus 97 ~~~~l~Pnd 105 (476)
T KOG0376|consen 97 KVKKLAPND 105 (476)
T ss_pred HhhhcCcCc
Confidence 666666665
No 252
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.24 E-value=0.044 Score=59.92 Aligned_cols=130 Identities=17% Similarity=0.126 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCChhHHHHhhhhhhc---ccchHHHHHHHHHhhhcCCCCChHHHH
Q 001357 560 DAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPNALSMLGDLELK---NDDWVKAKETFRAASDATDGKDSYATL 632 (1093)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~~~~d~~~~~ 632 (1093)
+....+-..|....+|+.-+.+++.+-.+ -+..+.+.+.+|.++.+ .|+.++|+..+..++.....+++.++.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34444445566666666666666555444 34455566666666666 677777777777766655555666666
Q ss_pred HhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhH
Q 001357 633 SLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 694 (1093)
Q Consensus 633 ~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A 694 (1093)
.+|.+ |-......... .....++|+..|.++.+.+| +.+.-.+++.++...|...+.
T Consensus 222 L~GRI-yKD~~~~s~~~---d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~ 278 (374)
T PF13281_consen 222 LLGRI-YKDLFLESNFT---DRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFET 278 (374)
T ss_pred HHHHH-HHHHHHHcCcc---chHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccc
Confidence 67777 65543221100 11568999999999999995 455556667777766654443
No 253
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.22 E-value=0.00048 Score=75.14 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=95.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
-..+..++..+.|+.|+.+|.+++.++|+++..+-..+..+++.++|..|+.-+.++++.+|.. ...|+..|.++..++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~-~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY-IKAYVRRGTAVMALG 86 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh-hheeeeccHHHHhHH
Confidence 3456777888899999999999999999999999899999999999999999999999999988 667888899999999
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
.+.+|+..|+....+.|+.+.+...+..+...
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence 99999999999999999988887776665433
No 254
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0082 Score=59.35 Aligned_cols=104 Identities=20% Similarity=0.284 Sum_probs=79.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------DRDN----------VPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1093)
..++...|+-++..|+|.+|...|..++.. .|.. .+.+++.+.|+...|+|-+++.....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 356777899999999999999999887642 3433 3456777778888888888888888888
Q ss_pred HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 001357 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1093)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1093)
...|.+ ..+++..|.+....=+..+|..-|.++|+++|.-..
T Consensus 258 ~~~~~n-vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 258 RHHPGN-VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred hcCCch-HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 888887 666777888877777888888888888888775433
No 255
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.21 E-value=0.2 Score=53.92 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=96.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHh
Q 001357 458 HFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQ 537 (1093)
Q Consensus 458 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~ 537 (1093)
....|+++.|..++.++-.... ..++ ........++++.|.....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~---~~~~--------------------------------~~~~~La~~~yn~G~~l~~ 47 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLN---SLDP--------------------------------DMAEELARVCYNIGKSLLS 47 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHh---cCCc--------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 3567899999999988866320 0000 0011245688999999999
Q ss_pred cC-ChHHHHHHHHHHHHhc----------CCh----HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHcCCChhHHHHh
Q 001357 538 IH-DTVAASVLYRLILFKY----------QDY----VDAYLRLAAIAKARNNLQ---LSIELVNEALKVNGKYPNALSML 599 (1093)
Q Consensus 538 ~g-~~~~A~~~~~~~l~~~----------p~~----~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l 599 (1093)
.+ +++.|..++++++... |+. ..++..++.++...+.++ +|..+++.+-...|+.+.++...
T Consensus 48 ~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~ 127 (278)
T PF08631_consen 48 KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLK 127 (278)
T ss_pred cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 99 9999999999998762 111 446777888888777654 45666666767778888888777
Q ss_pred hhhhhcccchHHHHHHHHHhhhcCC
Q 001357 600 GDLELKNDDWVKAKETFRAASDATD 624 (1093)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~l~~~~ 624 (1093)
..+..+.++.+.+...+.+++...+
T Consensus 128 l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 128 LEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHhccCChhHHHHHHHHHHHhcc
Confidence 7777778999999999999998765
No 256
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.20 E-value=0.68 Score=53.04 Aligned_cols=187 Identities=14% Similarity=0.165 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 001357 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYM 329 (1093)
Q Consensus 250 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 329 (1093)
+++|...|-.+-+.+ ....++...|++-.+.++++..-. ...+.....++..+|..+..+..++.|.++|.
T Consensus 750 feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777765432221 223466777888877777664321 11223445789999999999999999999998
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001357 330 ASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1093)
Q Consensus 330 ~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~ 409 (1093)
..-. .-++..+++....|++-.. ....-|++...+-.+|..+...|.-++|.+.|-+.- .|.
T Consensus 821 ~~~~-----------~e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk- 882 (1189)
T KOG2041|consen 821 YCGD-----------TENQIECLYRLELFGELEV----LARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK- 882 (1189)
T ss_pred hccc-----------hHhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH-
Confidence 7653 3345677777777766433 334458888999999999999999999999886531 121
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 410 AQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1093)
Q Consensus 410 ~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 474 (1093)
+ .+..+-..++|.+|.+..++.. +|. ...+....+.-+...++.-+|++..+++
T Consensus 883 --a--Av~tCv~LnQW~~avelaq~~~--l~q-----v~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 --A--AVHTCVELNQWGEAVELAQRFQ--LPQ-----VQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred --H--HHHHHHHHHHHHHHHHHHHhcc--chh-----HHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 1 1222235667777776544321 111 1223333445566677888888877776
No 257
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.20 E-value=0.06 Score=58.86 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 001357 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNC 376 (1093)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 376 (1093)
+-.++.+.+-.|++++|+..++++++..|...
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 44455666667777777777777777766544
No 258
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.13 E-value=0.65 Score=55.41 Aligned_cols=238 Identities=15% Similarity=0.077 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh-
Q 001357 525 VTVLFNLARLLEQIHDTVAASVLYRLILFKYQD---------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN- 594 (1093)
Q Consensus 525 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 594 (1093)
+......+.......++.+|..+..++...-|. .....-..+.+....|+++.|..+.+.++..-|.+..
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 344444566666677777777777776654332 1233344456667778888888888888877665433
Q ss_pred ----HHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHH-----HhHhHHHHHHHhhcccCchHHHHH--HHHHHHH
Q 001357 595 ----ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATL-----SLGNWNYFAALRNEKRAPKLEATH--LEKAKEL 663 (1093)
Q Consensus 595 ----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~-----~l~~~~y~~~~~~~~~~~~~~~~~--~~~A~~~ 663 (1093)
++..+|.+..-.|++.+|..+...+.+.....+.+.+. .-+.+ .... |+ +......
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i-l~~q------------Gq~~~a~~~~~ 561 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI-LEAQ------------GQVARAEQEKA 561 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHh------------hHHHHHHHHHH
Confidence 56677777778888888888877766654333333221 11222 2222 42 2222222
Q ss_pred H----HHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcC-CCCCC-chhHHHHHHHHHHHhcCHHHHHHHH
Q 001357 664 Y----TRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQ-MPDVWINLAHVYFAQGNFALAMKMY 737 (1093)
Q Consensus 664 ~----~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~ 737 (1093)
| .+-+...|...+.....+.++...-+++.+..-....++.... .+.+. ...+++.|+.+++..|++++|...+
T Consensus 562 ~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 562 FNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQL 641 (894)
T ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2 2334445555555555555544433355555555555444321 11111 2223358899999999999999999
Q ss_pred HHHHHhhcCCC-C----HHHHHHHHHHHHhhccHHHHHHHHHH
Q 001357 738 QNCLRKFYYNT-D----AQILLYLARTHYEAEQWQDCKKSLLR 775 (1093)
Q Consensus 738 ~~al~~~~~~~-~----~~~l~~la~~~~~~g~~~~A~~~~~~ 775 (1093)
..+......+. . ..+.......+...|+...|...+.+
T Consensus 642 ~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 642 DELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 99888765543 1 22222233445568999998888876
No 259
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.11 Score=52.42 Aligned_cols=183 Identities=15% Similarity=0.090 Sum_probs=144.3
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKG-EVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS-DSLEFYKRAL 189 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~-~Al~~~~~al 189 (1093)
.|+++-..++.++|.+-.+|..+-.++-..+ +..+-+..+..++..+|.|-..|...-.+.-..|++. .-+.+...++
T Consensus 61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 7999999999999999999988877776654 6788899999999999999999999999999999988 8899999999
Q ss_pred HhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hh--hHHhHHHHHHHHHHHHHhCCC
Q 001357 190 QVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ-AN--EAAGIRKGMEKMQRAFEIYPY 266 (1093)
Q Consensus 190 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-~~--~~~~~~~Al~~~~~al~~~p~ 266 (1093)
..+..+ -.+|...--|+...+.++.-+.+...+++.+-.|-.+|...-.+... .| +....+.-+.+....+.+.|+
T Consensus 141 ~~DaKN-YHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 141 DDDAKN-YHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred hccccc-hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 988777 55677777788888889999999999999988887777654432222 11 112356667888889999999
Q ss_pred cHHHHHHHHHHHHH-cC--ChHHHHHHHHHHH
Q 001357 267 CAMALNYLANHFFF-TG--QHFLVEQLTETAL 295 (1093)
Q Consensus 267 ~~~~~~~la~~~~~-~g--~~~~A~~~~~~al 295 (1093)
+..+|+.|..++.. .| .+..+..+.....
T Consensus 220 NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred CccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 99999999888875 44 2333444444443
No 260
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.12 E-value=2 Score=56.93 Aligned_cols=392 Identities=12% Similarity=0.048 Sum_probs=202.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 001357 273 YLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQ 352 (1093)
Q Consensus 273 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~ 352 (1093)
.++.+-++.+.|..|..+++.-.............++.+-.+|...++++.-.-....-. ..+ .........
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~----a~~----sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF----ADP----SLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh----cCc----cHHHHHHHH
Confidence 566777778888888888777421111111222344445557777777776665554311 111 244455566
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHH
Q 001357 353 LKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALD 430 (1093)
Q Consensus 353 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~--~~~~~~~A~~ 430 (1093)
...|++..|..+|+.+++..|+....+..+-......+.+...+...+-.....++...-+..++.-- ..++|+.-..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 67788888888888888888876666666666666666766666655555444444444444444322 4444443332
Q ss_pred HHH-------HHH---HHHHhcCCCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcc----
Q 001357 431 AFK-------TAR---TLLKKAGEEVPIEV-----------LNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLD---- 485 (1093)
Q Consensus 431 ~~~-------~a~---~~~~~~~~~~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 485 (1093)
++. .+. .+.-.......... ..++..+ ...|.|..+..+.-++...+.-.....
T Consensus 1540 ~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~-s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~ 1618 (2382)
T KOG0890|consen 1540 YLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSAC-SIEGSYVRSYEILMKLHLLLELENSIEELKK 1618 (2382)
T ss_pred hhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHh-hccchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 211 000 00000000000011 0011111 111233333333333322211000000
Q ss_pred -cccchhhhhh---------hhhHHHhh--hhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001357 486 -SKTKTYVIDA---------SASMLQFK--DMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (1093)
Q Consensus 486 -~~~~~~~~~~---------~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (1093)
........+. ....+..+ .+.+...+...............+|.+.|++....|.++.|....-.+.+
T Consensus 1619 ~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e 1698 (2382)
T KOG0890|consen 1619 VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKE 1698 (2382)
T ss_pred cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhh
Confidence 0000000001 00111111 11122222222222235567788999999999999999999988888776
Q ss_pred hcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CC----------Chh------HHHHhhhhhhcccc--hHHHHH
Q 001357 554 KYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN-GK----------YPN------ALSMLGDLELKNDD--WVKAKE 614 (1093)
Q Consensus 554 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~~~------~~~~l~~~~~~~g~--~~~A~~ 614 (1093)
.. -+.++...|..+...|+...|+.+++..+..+ |+ ... +...++...-..++ -..-++
T Consensus 1699 ~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk 1776 (2382)
T KOG0890|consen 1699 SR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILK 1776 (2382)
T ss_pred cc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHH
Confidence 55 46788999999999999999999999999765 22 111 22233333333344 344567
Q ss_pred HHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHH---HHHHHHHHHhhCCCCHHH
Q 001357 615 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEK---AKELYTRVIVQHTSNLYA 677 (1093)
Q Consensus 615 ~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~---A~~~~~~~l~~~p~~~~a 677 (1093)
.|..+....|. ....++.+|.. |.......+.+.....|++.. ++-.|.+++..+..+++.
T Consensus 1777 ~Y~~~~ail~e-we~~hy~l~~y-y~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyq 1840 (2382)
T KOG0890|consen 1777 YYHDAKAILPE-WEDKHYHLGKY-YDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQ 1840 (2382)
T ss_pred HHHHHHHHccc-ccCceeeHHHH-HHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHH
Confidence 77778777763 22233345543 433322222222233466666 677777888776555443
No 261
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.12 E-value=0.17 Score=55.12 Aligned_cols=128 Identities=18% Similarity=0.103 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYK 186 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~ 186 (1093)
+|+...|-+.+..+++..|.+|......+.+....|.|+.|...+..+-..-..-..+...+-..++..|+++.|+..-.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~ 381 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAE 381 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHH
Confidence 56677888888889999999999999999999999999999999887765544445566666778889999999999988
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALV 235 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 235 (1093)
-++...-.. +.+....+...-.+|-+++|...|++++.++|.....|+
T Consensus 382 ~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 382 MMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 888765555 333333455556788899999999999999886544443
No 262
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.013 Score=58.07 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCC----------chhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEI-----NKPHE----------FIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1093)
.++...|+-++..|+|.+|...|..++..+ ...|. ....+.++++|+...|+|-++++.+..++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 455666777777777777777777766422 11121 224578899999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001357 371 IYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAF 413 (1093)
Q Consensus 371 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 413 (1093)
.+|.+..+++..|.+....=+..+|...|.+++.++|.-..+.
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 9999999999999999999999999999999999998765443
No 263
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.11 E-value=0.00044 Score=46.77 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=17.6
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHcCCHHHHH
Q 001357 117 YNKASRIDMHEPSTWVGKGQLLLAKGEVEQAS 148 (1093)
Q Consensus 117 ~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~ 148 (1093)
|+++++++|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
No 264
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.09 E-value=1.1 Score=53.50 Aligned_cols=278 Identities=17% Similarity=0.058 Sum_probs=167.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----Cc
Q 001357 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFI-FPYYGLGQVQLKLGDFRSALTNFEKVLEIYP-----DN 375 (1093)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-----~~ 375 (1093)
+...+.+..-+.-+...|...+|+...-.+- +|... ......+.-+...++..- +..+++.-| .+
T Consensus 344 ~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~-----d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~ 414 (894)
T COG2909 344 ARLKELHRAAAEWFAEHGLPSEAIDHALAAG-----DPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLAST 414 (894)
T ss_pred CchhHHHHHHHHHHHhCCChHHHHHHHHhCC-----CHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhC
Confidence 3345667777777788888888887665542 22221 122223333444444332 333333333 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC
Q 001357 376 CETLKALGHIYVQLGQIEKAQELLRKAAKIDPR--D-------AQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE 445 (1093)
Q Consensus 376 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~--~-------~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~ 445 (1093)
+......+.......++.+|..++.++...-|. . ....-..+.+. ..++++.|....+.++...+.....
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 566667777888889999999999888764322 1 12222233344 7899999999999999988876666
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchH
Q 001357 446 VPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKV 525 (1093)
Q Consensus 446 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 525 (1093)
....++..+|.+..-.|++++|..+...+....... +......
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-------------------------------------~~~~l~~ 537 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH-------------------------------------DVYHLAL 537 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-------------------------------------ccHHHHH
Confidence 667888899999999999999999999887742100 0122344
Q ss_pred HHHHHHHHHHHhcCChHHHH--HHHHHH----HHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCChh-
Q 001357 526 TVLFNLARLLEQIHDTVAAS--VLYRLI----LFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKV----NGKYPN- 594 (1093)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~--~~~~~~----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~- 594 (1093)
.+.+..+.++..+|+...|. ..+..+ +...|-........+.++...-+++.+..-....+.+ .|....
T Consensus 538 ~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~ 617 (894)
T COG2909 538 WSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLS 617 (894)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHH
Confidence 55566688888888443333 233222 2233432222222222222222244444444444333 333322
Q ss_pred --HHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 595 --ALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 595 --~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
+.++++.+++..|++++|...+..+......
T Consensus 618 ~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 618 RLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 3357899999999999999999988775433
No 265
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.02 E-value=0.0015 Score=44.36 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001357 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1093)
Q Consensus 750 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 783 (1093)
+.+++.+|.+++..|++++|+..|++++.++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3566777777777777777777777777777764
No 266
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.01 E-value=0.00078 Score=45.55 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=24.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 001357 151 FKIVLEADRDNVPALLGQACVEFNRGRYSDSL 182 (1093)
Q Consensus 151 ~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al 182 (1093)
|+++++.+|+++.+|+.+|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66777777777777777777777777777765
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.99 E-value=0.36 Score=54.43 Aligned_cols=69 Identities=9% Similarity=0.120 Sum_probs=55.7
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 302 PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINK-PHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1093)
Q Consensus 302 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1093)
......|...+.+....|.++.|...+.++...... ....+.+.+..+.++...|+..+|+..+...+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678999999999999999999999998863211 122456778889999999999999999988887
No 268
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.99 E-value=1.3 Score=52.45 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH-hcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHH
Q 001357 655 THLEKAKELYTRVIVQH-TSNLYAANGAGVVLA-EKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 732 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~-p~~~~a~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~ 732 (1093)
..+..|...|....... -.....+...|.+.+ .+++.+.|+.+...+.....+ .....|+....+-...|+...
T Consensus 440 ~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~----~iag~Wle~~~lE~~~g~~~~ 515 (881)
T KOG0128|consen 440 AAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG----SIAGKWLEAINLEREYGDGPS 515 (881)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc----hHHHHHHHHHhHHHHhCCchh
Confidence 66777888777776652 223344555666665 467999999999888775531 233478888888888899999
Q ss_pred HHHHHHHHHHhhcCCCC-HHHHHHHHHHHHhhccHHHHHHH
Q 001357 733 AMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKS 772 (1093)
Q Consensus 733 A~~~~~~al~~~~~~~~-~~~l~~la~~~~~~g~~~~A~~~ 772 (1093)
|..++.+|+.....+.+ -.++...-+.....|.++.....
T Consensus 516 ~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 516 ARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLC 556 (881)
T ss_pred HHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhh
Confidence 99999999886544443 44555555555556666654433
No 269
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.94 E-value=0.024 Score=62.88 Aligned_cols=175 Identities=19% Similarity=0.207 Sum_probs=120.5
Q ss_pred ChhHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHH--HHHhchhhhh
Q 001357 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVY--YTYLGKIETK 102 (1093)
Q Consensus 25 ~~~~~~~~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~--y~~~g~~~~~ 102 (1093)
|+..|+.+|...|--.+++++++..+..+|+...|..++++|+-. | ++. .+.....+ -...|...
T Consensus 25 Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~-----~-----e~~-~~~~F~~~~~~~~~g~~r-- 91 (360)
T PF04910_consen 25 DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA-----F-----ERA-FHPSFSPFRSNLTSGNCR-- 91 (360)
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----H-----HHH-HHHHhhhhhcccccCccc--
Confidence 899999999999999999999999999999999999999998622 1 000 00000000 00111111
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCCCh---hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHcCC
Q 001357 103 QREKEEHFILATQYYNKASRIDMHEP---STWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVPA-LLGQACVEFNRGR 177 (1093)
Q Consensus 103 ~~~r~~~~~~A~~~~~~a~~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a-~~~la~~~~~~g~ 177 (1093)
..-..+.|- .+++.....+.+.|-+..|+++++-++.++|. ++.+ ++.+=....+.++
T Consensus 92 -----------------L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 92 -----------------LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQ 154 (360)
T ss_pred -----------------cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCC
Confidence 000112222 34556678888999999999999999999998 6654 4444455577788
Q ss_pred hHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCC
Q 001357 178 YSDSLEFYKRALQVHPSC----PGAIRLGIGLCRYKLGQL---------------GKARQAFQRALQLDPE 229 (1093)
Q Consensus 178 ~~~Al~~~~~al~~~p~~----~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~ 229 (1093)
|+--+.+++......... .+...+.++.+++.+++. +.|...+.+|+...|.
T Consensus 155 y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 155 YQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 887788877765521111 234567888999998888 7888888888887764
No 270
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.11 Score=53.86 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHH
Q 001357 560 DAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNY 639 (1093)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y 639 (1093)
+.-+.-+.-....|++.+|...|..++...|.+..+...++.+|+..|+.+.|...+..+-..........+ .+.+.+
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l--~a~i~l 212 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGL--QAQIEL 212 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHH--HHHHHH
Confidence 344455566778899999999999999999999999999999999999999999998865333222111111 111101
Q ss_pred HHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHH
Q 001357 640 FAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWIN 719 (1093)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 719 (1093)
...+ ....+ ...+.+.+..+|+|+.+.+.++..+...|+.+.|++.+-.++..+.+- .+..+.-.
T Consensus 213 l~qa-----------a~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~---~d~~~Rk~ 277 (304)
T COG3118 213 LEQA-----------AATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF---EDGEARKT 277 (304)
T ss_pred HHHH-----------hcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---cCcHHHHH
Confidence 1111 11111 234566677899999999999999999999999999999988876432 34445555
Q ss_pred HHHHHHHhcC
Q 001357 720 LAHVYFAQGN 729 (1093)
Q Consensus 720 lg~~~~~~g~ 729 (1093)
+-.++...|.
T Consensus 278 lle~f~~~g~ 287 (304)
T COG3118 278 LLELFEAFGP 287 (304)
T ss_pred HHHHHHhcCC
Confidence 5555444443
No 271
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.90 E-value=1.4 Score=54.89 Aligned_cols=91 Identities=23% Similarity=0.251 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCh---hhHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 001357 106 KEEHFILATQYYNKASRIDMHEP---STWVGKGQLLLAK----G---EVEQASSAFKIVLEADRDNVPALLGQACVEFNR 175 (1093)
Q Consensus 106 r~~~~~~A~~~~~~a~~~~p~~~---~~~~~~a~~~~~~----g---~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 175 (1093)
..+.|+.|+..|.++...-|... .+.+..|..++.+ | .+.+|+..|+.. ...|.-|--|++.|.+|.++
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 565 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRL 565 (932)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHh
Confidence 36677888888888877777543 4566667666544 2 367777777664 33566677788888888888
Q ss_pred CChHHHHHHHHHHHHhCCCChH
Q 001357 176 GRYSDSLEFYKRALQVHPSCPG 197 (1093)
Q Consensus 176 g~~~~Al~~~~~al~~~p~~~~ 197 (1093)
|+|.+-++.|.-+++..|+.+.
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 566 GEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred hhHHHHHHHHHHHHHhcCCCCc
Confidence 8888888888888888877743
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.1 Score=50.50 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHI 385 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 385 (1093)
.+...++..+...|++++|...++.++....+..-...+-..++.+++..|.+++|+..+...... .-.+......|.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDi 168 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhH
Confidence 445566777778888888888888777532222222345567788888888888888877665321 1123345667888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Q 001357 386 YVQLGQIEKAQELLRKAAKIDPR 408 (1093)
Q Consensus 386 ~~~~g~~~~A~~~l~~~l~~~p~ 408 (1093)
+...|+..+|+..|.+++...++
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCC
Confidence 88888888888888888877643
No 273
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.84 E-value=0.0021 Score=43.70 Aligned_cols=32 Identities=16% Similarity=0.367 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001357 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1093)
Q Consensus 751 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~ 782 (1093)
.+|+.+|.+|...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 274
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.82 E-value=0.081 Score=58.16 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 001357 178 YSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKM 257 (1093)
Q Consensus 178 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~ 257 (1093)
.+.-+.+|++|++.+|.+ ..+++.+-.+..+....+.....|++++..+|++...|..+.......-..-.+......|
T Consensus 47 ~E~klsilerAL~~np~~-~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPDS-ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 345677888888888877 6667777777777778888888888888888888888776655443321111145555555
Q ss_pred HHHHH
Q 001357 258 QRAFE 262 (1093)
Q Consensus 258 ~~al~ 262 (1093)
.+++.
T Consensus 126 ~~~l~ 130 (321)
T PF08424_consen 126 EKCLR 130 (321)
T ss_pred HHHHH
Confidence 55554
No 275
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.066 Score=51.76 Aligned_cols=103 Identities=21% Similarity=0.047 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHH
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGL 348 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l 348 (1093)
.+...++..++..+++++|+..++.++..+.+....+.+-..++++...+|.+++|+..+..... ..-........
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~----~~w~~~~~elr 165 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE----ESWAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----ccHHHHHHHHh
Confidence 34456677888888888888888888876666666667788899999999999999998876542 22223345668
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001357 349 GQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1093)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1093)
|.++...|+-.+|+..|.+++...+..
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 999999999999999999999886543
No 276
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.81 E-value=0.0021 Score=43.63 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1093)
.+|+.+|.+++..|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35566666666666666666666666666654
No 277
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.75 E-value=0.0034 Score=42.59 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1093)
+|+.+|.+++..|++++|+..|++++.++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555554
No 278
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.37 Score=48.79 Aligned_cols=147 Identities=11% Similarity=0.017 Sum_probs=78.4
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHHcCCChhHH
Q 001357 523 NKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKA-RN-----NLQLSIELVNEALKVNGKYPNAL 596 (1093)
Q Consensus 523 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~al~~~p~~~~~~ 596 (1093)
.+..+|...--+....+.++.-+.+...+++.+--+-.+|+..-.+... .| ..+.-+.+..+.+...|++..+|
T Consensus 145 KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaW 224 (318)
T KOG0530|consen 145 KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAW 224 (318)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHH
Confidence 4455555555555566667777777777776665555555443322221 11 12334556677778888888888
Q ss_pred HHhhhhhhc-cc--chHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH-hhCC
Q 001357 597 SMLGDLELK-ND--DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVI-VQHT 672 (1093)
Q Consensus 597 ~~l~~~~~~-~g--~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~~p 672 (1093)
..|.-++.. .| ............+...+...++.+..+.++ |...+...+...+ .-..+|..+|+.+- +.+|
T Consensus 225 nYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~-~~e~~l~~~~~~~---~~a~~a~~ly~~La~~~Dp 300 (318)
T KOG0530|consen 225 NYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDL-YAEDALAYKSSAE---ELARKAVKLYEDLAIKVDP 300 (318)
T ss_pred HHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHH-HHHHHhhccccch---HHHHHHHHHHHHHhhccCc
Confidence 877777664 33 133333444444334455567777677777 6222222111111 11224677776655 5555
Q ss_pred C
Q 001357 673 S 673 (1093)
Q Consensus 673 ~ 673 (1093)
-
T Consensus 301 i 301 (318)
T KOG0530|consen 301 I 301 (318)
T ss_pred H
Confidence 4
No 279
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=4.4 Score=53.95 Aligned_cols=329 Identities=12% Similarity=0.041 Sum_probs=183.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcC
Q 001357 45 IIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRID 124 (1093)
Q Consensus 45 ~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~ 124 (1093)
++|.+-++.|.|.+|+-.+++-...+... .-.-..+..+-.+|..++.... ..-.... ...+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~------~~~e~l~fllq~lY~~i~dpDg-----------V~Gv~~~-r~a~ 1449 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK------ETEEALYFLLQNLYGSIHDPDG-----------VEGVSAR-RFAD 1449 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh------HHHHHHHHHHHHHHHhcCCcch-----------hhhHHHH-hhcC
Confidence 67888889999999999999842221110 0112234444446766665441 1111111 1122
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Q 001357 125 MHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIG 204 (1093)
Q Consensus 125 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 204 (1093)
| .+..........|++..|..+|++++..+|+....+.+.-...+..|.+...+...+-.....++........--
T Consensus 1450 ~----sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~ 1525 (2382)
T KOG0890|consen 1450 P----SLYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGV 1525 (2382)
T ss_pred c----cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHH
Confidence 3 456666777788999999999999999999988888888888889999998888777666555554333333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHh--HHHHHHHHHHHHHhCC--------CcHHHHHHH
Q 001357 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAG--IRKGMEKMQRAFEIYP--------YCAMALNYL 274 (1093)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~--~~~Al~~~~~al~~~p--------~~~~~~~~l 274 (1093)
.+-|++++++.-..... ..+..+..+.. +|.+......... ..+.+...+..+ +.| .....+..+
T Consensus 1526 eaaW~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~-i~~lsa~s~~~Sy~~~Y~~~ 1600 (2382)
T KOG0890|consen 1526 EAAWRLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELV-IENLSACSIEGSYVRSYEIL 1600 (2382)
T ss_pred HHHhhhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHh-hhhHHHhhccchHHHHHHHH
Confidence 45588888877665543 12222222221 4444443322111 112222222111 111 111111111
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----CCCCCchhhHHHH
Q 001357 275 ANHFFFTGQHFLVEQLTETALAVTNHG--PTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI----NKPHEFIFPYYGL 348 (1093)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~l 348 (1093)
..++.. -+.+ ...+......... ..+...|-+....-....+..+-+-.+++++-.. ........+|+..
T Consensus 1601 ~kLH~l-~el~---~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqs 1676 (2382)
T KOG0890|consen 1601 MKLHLL-LELE---NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQS 1676 (2382)
T ss_pred HHHHHH-HHHH---HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHH
Confidence 111110 0001 1111111111111 1122222222222111222333344444444322 1245567889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001357 349 GQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKID 406 (1093)
Q Consensus 349 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 406 (1093)
|.+....|+++.|...+-.+.+.. -+.+....|..+...|+...|+.++++.+..+
T Consensus 1677 AriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1677 ARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999999999999988887765 57888899999999999999999999998654
No 280
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.65 E-value=2.2 Score=53.20 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=81.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhc----C---CHHHHHHHHHHHHHhcCCCCCchhhHHH
Q 001357 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSK----G---DYEKAGLYYMASVKEINKPHEFIFPYYG 347 (1093)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~~~~~~~~~~~~~ 347 (1093)
-.++...+.|+.|+..|+++....+.....-++.+..|..+..+ | .+++|+.-|.+.- ..+..+.-|++
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 557 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH----GGVGAPLEYLG 557 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc----CCCCCchHHHh
Confidence 45677778888888888888766655555567788888776643 2 4778888887765 55677777999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIY 386 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 386 (1093)
.|.+|...|++++-+++|.-+++.+|.++.+-...-.+.
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLV 596 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 999999999999999999999999998876544433333
No 281
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.64 E-value=1.9 Score=49.55 Aligned_cols=268 Identities=15% Similarity=0.092 Sum_probs=148.1
Q ss_pred eEEEeCCCCCCChhHHHHHHH--------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHH
Q 001357 14 EVRVALDQLPRDASDILDILK--------AEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAI 85 (1093)
Q Consensus 14 ~v~~~~~~lp~~~~~~~~~l~--------~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~ 85 (1093)
+|.+-+..|. |+..|++.+. ++.+-+..|-.+|..-...-.++-|...|-+.-. |++. .+
T Consensus 659 ii~~~ikslr-D~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d------Y~Gi-----k~ 726 (1189)
T KOG2041|consen 659 IIEVMIKSLR-DVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD------YAGI-----KL 726 (1189)
T ss_pred EEEEEehhhh-hHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc------ccch-----hH
Confidence 3444444554 4555554432 3445678999999988887777777776666422 3332 22
Q ss_pred HHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHH
Q 001357 86 LNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR--DNVP 163 (1093)
Q Consensus 86 ~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~ 163 (1093)
.-.|+.++...-+.. ...---|.|++|.++|-.+.+.| ....++...|+|-...++++.--.-+. .-..
T Consensus 727 vkrl~~i~s~~~q~a-ei~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~ 797 (1189)
T KOG2041|consen 727 VKRLRTIHSKEQQRA-EISAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKED 797 (1189)
T ss_pred HHHhhhhhhHHHHhH-hHhhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHH
Confidence 223333332211100 00112355668888887665433 123455677888776666654221111 1256
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 001357 164 ALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQ 243 (1093)
Q Consensus 164 a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 243 (1093)
++..+|..+..+..+.+|.++|...- ..-++..|++++..+++-.. ....-|++...+-.+|.++..
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~---------~~e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCG---------DTENQIECLYRLELFGELEV----LARTLPEDSELLPVMADMFTS 864 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc---------chHhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHh
Confidence 88888998888999999998887642 12346678888777766433 333457777777788888888
Q ss_pred hhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHH
Q 001357 244 ANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEK 323 (1093)
Q Consensus 244 ~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 323 (1093)
.|. -++|++.|-+. ..|... ...+...+++.+|..+..+.. -|.........+.-+...++.-+
T Consensus 865 vGM---C~qAV~a~Lr~--s~pkaA------v~tCv~LnQW~~avelaq~~~-----l~qv~tliak~aaqll~~~~~~e 928 (1189)
T KOG2041|consen 865 VGM---CDQAVEAYLRR--SLPKAA------VHTCVELNQWGEAVELAQRFQ-----LPQVQTLIAKQAAQLLADANHME 928 (1189)
T ss_pred hch---HHHHHHHHHhc--cCcHHH------HHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHhhcchHH
Confidence 777 66777666432 122211 122334455555655554321 11111222223334455566666
Q ss_pred HHHHHHHH
Q 001357 324 AGLYYMAS 331 (1093)
Q Consensus 324 A~~~~~~a 331 (1093)
|++.++++
T Consensus 929 aIe~~Rka 936 (1189)
T KOG2041|consen 929 AIEKDRKA 936 (1189)
T ss_pred HHHHhhhc
Confidence 66666555
No 282
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.12 Score=53.96 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHH
Q 001357 714 PDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (1093)
Q Consensus 714 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la 791 (1093)
+..+-.-|.-|++..+|..|+..|.+.|+.--..++ ...|.+-+-+.+..|++..|+.-+.+++..+|.+..+++.-|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 334445577788888888888888888887333333 556667888888888888888888888888888887777777
Q ss_pred HH
Q 001357 792 VA 793 (1093)
Q Consensus 792 ~~ 793 (1093)
.|
T Consensus 161 kc 162 (390)
T KOG0551|consen 161 KC 162 (390)
T ss_pred HH
Confidence 76
No 283
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.51 E-value=1.8 Score=47.60 Aligned_cols=127 Identities=14% Similarity=0.067 Sum_probs=99.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHH
Q 001357 138 LLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKAR 217 (1093)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~ 217 (1093)
....|+.-.|-..+..++...|..|......+.+....|.|+.|+..+.-+-..-... ......+-.....+|+++.|.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-DSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-chHHHHHHHhhhchhhHHHHH
Confidence 4566889999999999999999999999999999999999999999887665543333 223344556778899999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcH
Q 001357 218 QAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 218 ~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~ 268 (1093)
..-.-++...-.+++....-+......+- ++++.-.+.+.+.++|...
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~---~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQL---FDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhH---HHHHHHHHHHHhccCChhc
Confidence 99988887766677666555555555555 8999999999999987644
No 284
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.086 Score=55.02 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGL 205 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 205 (1093)
.+-.-|+-|+...+|..|..+|...|+.... +...|...|.+.+..|+|..|+.-+.+++..+|.. .-.++.-+.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhhhH
Confidence 4455688888888888888888888876433 35667888888888888888888888888888888 666788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Q 001357 206 CRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 206 ~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
|++.+.++..|....+..+.++-
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhH
Confidence 88888888888888888766543
No 285
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.31 E-value=0.27 Score=49.58 Aligned_cols=204 Identities=15% Similarity=0.145 Sum_probs=117.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHH-hcC
Q 001357 355 LGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKI-----DPRDAQ-AFIDLGELL-ISS 423 (1093)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~~~l~~-----~p~~~~-~~~~la~~~-~~~ 423 (1093)
...+++|+..|.+++.+.+... .++..+..++++++++++-...|.+++.. ..+... ....+.... ...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3477888888888888876543 46777888888889888888888887642 122221 112222222 344
Q ss_pred CHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHh
Q 001357 424 DTGAALDAFKTARTLLKKAG-EEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (1093)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1093)
+.+--..+|+..+..+.+.. ......+...+|.+|+..|+|..-...+.+....|....--+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD---------------- 183 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD---------------- 183 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh----------------
Confidence 44444556666555555432 2222345567899999999999988888887765531110000
Q ss_pred hhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCh--HHHH----HHHHHHHHHcCCHH
Q 001357 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDY--VDAY----LRLAAIAKARNNLQ 576 (1093)
Q Consensus 503 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~----~~la~~~~~~g~~~ 576 (1093)
.........++..-...|..+.+...-..+|++++.+.... +... -.=|.++.+.|.++
T Consensus 184 ---------------~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe 248 (440)
T KOG1464|consen 184 ---------------QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFE 248 (440)
T ss_pred ---------------hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHH
Confidence 00112234455555666777777677777777777643221 1111 11123455556666
Q ss_pred HHHHHHHHHHHHc
Q 001357 577 LSIELVNEALKVN 589 (1093)
Q Consensus 577 ~A~~~~~~al~~~ 589 (1093)
+|..-|-.+++..
T Consensus 249 ~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 249 KAHTDFFEAFKNY 261 (440)
T ss_pred HHHhHHHHHHhcc
Confidence 6666665655543
No 286
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.27 E-value=0.55 Score=51.27 Aligned_cols=173 Identities=19% Similarity=0.121 Sum_probs=118.3
Q ss_pred HhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhc----cc
Q 001357 536 EQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKAR----NNLQLSIELVNEALKVNGKYPNALSMLGDLELK----ND 607 (1093)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g 607 (1093)
...+.+..|...+..+-.. ........++.++... .+...|..+|..+ ....++.+.+.+|.+|.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCccc
Confidence 3456777777777776542 2236677777777654 4678899999843 445677888899999877 44
Q ss_pred chHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 001357 608 DWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAE 687 (1093)
Q Consensus 608 ~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~ 687 (1093)
+..+|..+|.++......+-..+...++.+ |.... ... .-......|+..|.++.... ++.+...+|.+|..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~-~~~g~-~~~----~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~ 199 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLA-YLSGL-QAL----AVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK 199 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHcCh-hhh----cccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence 899999999999987654223446677777 65541 000 00134457888888887765 66777778877765
Q ss_pred c----CCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhc
Q 001357 688 K----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQG 728 (1093)
Q Consensus 688 ~----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g 728 (1093)
- .++.+|..+|.++.+.. + ....++++ ++...|
T Consensus 200 G~Gv~~d~~~A~~wy~~Aa~~g------~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 200 GLGVPRDLKKAFRWYKKAAEQG------D-GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCCCcCHHHHHHHHHHHHHCC------C-HHHHHHHH-HHHhcC
Confidence 3 37788888888888865 3 67777888 666555
No 287
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.22 E-value=0.18 Score=56.04 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=107.1
Q ss_pred HHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHHH
Q 001357 119 KASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA--------------DR------------DN---VPALLGQA 169 (1093)
Q Consensus 119 ~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~---~~a~~~la 169 (1093)
..++.+|-+.++++.++.++..+|++..|..++++++-. ++ .| ..+++...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345778999999999999999999999999998887531 11 12 23566777
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHH
Q 001357 170 CVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPE-----NVEALVALAVMDLQ 243 (1093)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~la~~~~~ 243 (1093)
..+.+.|-+..|+++.+-++.++|. ++-.+++.+-....+.++++--+..++........ -+...+..+.++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 7888899999999999999999998 77777777778888888888777777765542111 12334455555555
Q ss_pred hhhH------------HhHHHHHHHHHHHHHhCCCcH
Q 001357 244 ANEA------------AGIRKGMEKMQRAFEIYPYCA 268 (1093)
Q Consensus 244 ~~~~------------~~~~~Al~~~~~al~~~p~~~ 268 (1093)
.++. ...+.|-..+.+|+...|.-.
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 5441 112677777777777776443
No 288
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.19 E-value=4.1 Score=48.40 Aligned_cols=433 Identities=12% Similarity=0.032 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcCChHHHHHHHH
Q 001357 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEF---NRGRYSDSLEFYK 186 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~---~~g~~~~Al~~~~ 186 (1093)
-..=+..+..-+.+++.+....+.+..++...|++++-...-..+....|.++..|+.-..-.. ..+.-..+...|+
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 3344566666677788888888888888889998887777777777777888777765544332 2366777778888
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 001357 187 RALQVHPSCPGAIRLGIGLCRYKL-------GQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1093)
Q Consensus 187 ~al~~~p~~~~~~~~~la~~~~~~-------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~ 259 (1093)
+++.-.-. ..+|...+..+... ++++.-+..|.+++..-.....--.. +-
T Consensus 175 kal~dy~~--v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~-------------~w-------- 231 (881)
T KOG0128|consen 175 KALGDYNS--VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAA-------------IW-------- 231 (881)
T ss_pred HHhccccc--chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHH-------------HH--------
Confidence 88764322 23444444444433 45666667777776532211100000 00
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHH--H-HHHhcCCHHHHHHHHHHHHHhc-
Q 001357 260 AFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLA--R-SYHSKGDYEKAGLYYMASVKEI- 335 (1093)
Q Consensus 260 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la--~-~~~~~g~~~~A~~~~~~al~~~- 335 (1093)
..+..+...|...-..++.+.++...+...-........|.... . ......+++.|...+.+.+-.+
T Consensus 232 ---------e~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e 302 (881)
T KOG0128|consen 232 ---------EMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFE 302 (881)
T ss_pred ---------HHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHH
Confidence 00111111111111112333333333322211001111111111 0 1111223333333322222110
Q ss_pred ---CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHH
Q 001357 336 ---NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYV-QLGQIEKAQELLRKAAKIDPRDAQ 411 (1093)
Q Consensus 336 ---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~l~~~p~~~~ 411 (1093)
...+.....|..+.......|....-...+++++...+.+...|...+...- .++-...+...+-+++...|-...
T Consensus 303 ~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgd 382 (881)
T KOG0128|consen 303 RLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGD 382 (881)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHH
Confidence 0223333446666667777888887788888888777777777776665432 223444555666666666666555
Q ss_pred HHHHHHHHH-hcC-CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcchhhhh
Q 001357 412 AFIDLGELL-ISS-DTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGE------FESAHQSFKDALGDGIWLTL 483 (1093)
Q Consensus 412 ~~~~la~~~-~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~ 483 (1093)
+|-..-..+ +.+ ....-...+.+++.. .+..++.........++ ++.-...|+.|...
T Consensus 383 L~~rallAleR~re~~~vI~~~l~~~ls~--------~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~e------ 448 (881)
T KOG0128|consen 383 LWKRALLALERNREEITVIVQNLEKDLSM--------TVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEE------ 448 (881)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHHHHHH--------HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH------
Confidence 554433333 222 122222222222221 01111111111122222 22222233333221
Q ss_pred cccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHH-HhcCChHHHHHHHHHHHHhcCChHH-H
Q 001357 484 LDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLL-EQIHDTVAASVLYRLILFKYQDYVD-A 561 (1093)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~-~ 561 (1093)
+...... .-.....++...|.+. ..+++.+.+..++..++...-.... .
T Consensus 449 ------------------------Lt~~~~~-----~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~ 499 (881)
T KOG0128|consen 449 ------------------------LTELYGD-----QLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGK 499 (881)
T ss_pred ------------------------HHHHhhh-----hhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHH
Confidence 0000000 0011233444455553 4567889999998887765544444 6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHc--CCC-hhHHHHhhhhhhcccchHHHHHHHH
Q 001357 562 YLRLAAIAKARNNLQLSIELVNEALKVN--GKY-PNALSMLGDLELKNDDWVKAKETFR 617 (1093)
Q Consensus 562 ~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (1093)
|+....+-...|+...+..+++.++..- |++ ..++..+-.+....|.++.......
T Consensus 500 Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~ 558 (881)
T KOG0128|consen 500 WLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPE 558 (881)
T ss_pred HHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHH
Confidence 7777777777789999988777776543 221 1233333344444455554444433
No 289
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.18 E-value=0.26 Score=47.18 Aligned_cols=124 Identities=21% Similarity=0.234 Sum_probs=79.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 001357 309 YNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDF-RSALTNFEKVLEIYPDNCETLKALGHIYV 387 (1093)
Q Consensus 309 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 387 (1093)
...|......|+...++..+.+++.....+.-..... ..+ ......+... ...++..++..+.
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~------~~~~~~~l~~~~~ 73 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL------YLDALERLAEALL 73 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 3345566677888888888888887543221110000 111 1112222222 3456777888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh-cCCCCCH
Q 001357 388 QLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK-AGEEVPI 448 (1093)
Q Consensus 388 ~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 448 (1093)
..|+++.|+..+.+++..+|.+..++..+..++ ..|+...|+..|.++...+.. .+..+++
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 999999999999999999999999999999999 999999999999998887764 3444433
No 290
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.15 E-value=1.8 Score=43.96 Aligned_cols=200 Identities=13% Similarity=0.137 Sum_probs=126.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcC
Q 001357 389 LGQIEKAQELLRKAAKIDPRDA----QAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEE-VPIEVLNNIGVIHFEKG 462 (1093)
Q Consensus 389 ~g~~~~A~~~l~~~l~~~p~~~----~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~la~~~~~~g 462 (1093)
....++|+..|++++.+.+.-. .++-.+..+. ..+++++-+..|.+.+......-.. .+....+++-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3478999999999999987643 3455555666 8999999999999888776653211 12233333333333334
Q ss_pred CHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChH
Q 001357 463 EFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTV 542 (1093)
Q Consensus 463 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 542 (1093)
+.+.-..+|+..+.. +.+.. ....-..+...+|.+|...+.+.
T Consensus 120 ~m~LLQ~FYeTTL~A---------------------------------LkdAK----NeRLWFKTNtKLgkl~fd~~e~~ 162 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDA---------------------------------LKDAK----NERLWFKTNTKLGKLYFDRGEYT 162 (440)
T ss_pred hhHHHHHHHHHHHHH---------------------------------HHhhh----cceeeeeccchHhhhheeHHHHH
Confidence 444444444443331 00000 00011123345788888888888
Q ss_pred HHHHHHHHHHHhcCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChh------HHHHhhhhhh
Q 001357 543 AASVLYRLILFKYQD------------YVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPN------ALSMLGDLEL 604 (1093)
Q Consensus 543 ~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~ 604 (1093)
.-..++.++-..+.. ..+.|..-..+|..+.+...-..+|++++.+...-|. +.-.=|.+++
T Consensus 163 kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHl 242 (440)
T KOG1464|consen 163 KLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHL 242 (440)
T ss_pred HHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCcccc
Confidence 887777776553321 2456666677888888888888889999887644332 2233466788
Q ss_pred cccchHHHHHHHHHhhhcCCC
Q 001357 605 KNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 605 ~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
+.|+|++|..-|-.+.+.++.
T Consensus 243 reg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 243 REGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred ccchHHHHHhHHHHHHhcccc
Confidence 999999999999888886543
No 291
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.11 E-value=0.04 Score=48.12 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=81.5
Q ss_pred HHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHHhcCC
Q 001357 46 IAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKASRIDM 125 (1093)
Q Consensus 46 la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p 125 (1093)
.|..++.+|++-+|+++++..+...... . .-.-++..-|.++..++....+...|...+-.++..|.++..+.|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~----~--~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED----E--SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC----C--chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence 5789999999999999999986442211 0 112355666777877777776777788888889999999999998
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA 157 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 157 (1093)
..+..++.+|.-+-....|++++.-.++.+..
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888888888777777788888888887765
No 292
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.09 E-value=0.27 Score=47.06 Aligned_cols=27 Identities=19% Similarity=0.051 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001357 452 NNIGVIHFEKGEFESAHQSFKDALGDG 478 (1093)
Q Consensus 452 ~~la~~~~~~g~~~~A~~~~~~al~~~ 478 (1093)
...|......|+...++..+.+++.+.
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly 36 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALY 36 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 334555667788899999999998864
No 293
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.06 E-value=0.061 Score=48.36 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=62.5
Q ss_pred chhHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhh
Q 001357 713 MPDVWINLAHVYFAQG---NFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRF 788 (1093)
Q Consensus 713 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 788 (1093)
.....|+++|++.... +..+.+.+++..++.-+....-..+|+|+..+++.++|+.+++++..+++..|+|+.+.-
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 5678899999998765 566788999999873222223788999999999999999999999999999999966443
No 294
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.03 E-value=0.57 Score=51.54 Aligned_cols=121 Identities=14% Similarity=0.074 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-h---cCCHHHHHHHHH
Q 001357 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-I---SSDTGAALDAFK 433 (1093)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~---~~~~~~A~~~~~ 433 (1093)
.+.-+.+|+++++.+|++...+..+..+..+....++....+++++..+|++...|..+.... . .-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999998877755 2 235778888888
Q ss_pred HHHHHHHhcCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 001357 434 TARTLLKKAGEEV-------------PIEVLNNIGVIHFEKGEFESAHQSFKDALGDG 478 (1093)
Q Consensus 434 ~a~~~~~~~~~~~-------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 478 (1093)
+++..+....... ...++..+.....+.|..+.|+..++-.++.+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 8888776543221 13566777888889999999999999999864
No 295
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=3.8 Score=46.18 Aligned_cols=194 Identities=13% Similarity=0.102 Sum_probs=106.1
Q ss_pred CCCCChhHHHHHHHhcCCChH--HHHHHHHHHHHcCCHHHHHHHHHhcCCC----chhhhhhhhHHHHHHHHHHHHHHHH
Q 001357 21 QLPRDASDILDILKAEQAPLD--LWLIIAREYFKQGKVEQFRQILEEGSSP----EIDEYYADVRYERIAILNALGVYYT 94 (1093)
Q Consensus 21 ~lp~~~~~~~~~l~~e~~~~~--~~~~la~~y~~~g~~~~a~~~l~~a~~~----~~~~~~~~~~~~~~~~~~~la~~y~ 94 (1093)
++.+|...+..+-.++.-+.. +-+.+...||..|.|++|+...-++-.. +.+.||....+..+.++.....-..
T Consensus 38 eIsddl~~Ie~lydd~sf~~remaaL~~SKvYy~LgeY~~Ai~yAL~agdrfl~D~~S~y~etiv~k~iem~vh~~~~~y 117 (926)
T COG5116 38 EISDDLRYIEALYDDDSFDPREMAALCLSKVYYVLGEYQQAIEYALRAGDRFLVDDGSFYYETIVYKSIEMYVHMMDSAY 117 (926)
T ss_pred hhhchhhHHHHhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCceeecCCccceehhHHhHHHHHHHHHHHhh
Confidence 334455555555555566666 7788999999999999999987776431 1222333334455555554443333
Q ss_pred HhchhhhhhhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 001357 95 YLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVE 172 (1093)
Q Consensus 95 ~~g~~~~~~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~ 172 (1093)
..|....-... -..+++.+....-.+...-+.+|.... | --+...+.++....+. ...++.++...
T Consensus 118 ~~~~~d~iD~~-------l~~v~e~i~~kc~~~se~~~~lgIa~e--g---~rldiie~~l~~~~d~di~~ylL~Lait~ 185 (926)
T COG5116 118 IGGDKDIIDRI-------LDFVLEVIGAKCVDDSEIGYLLGIAAE--G---LRLDIIEKYLSDGNDCDIINYLLDLAITL 185 (926)
T ss_pred hCCCcccchHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHH--H---HHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 33332111111 112222233222233333344444321 1 1233444555443222 33555666555
Q ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 173 FNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 173 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
.....+.. .++...+...|..+..-++.++.|+..+++-..|.+.+++..+.+.
T Consensus 186 v~~~~fr~--~ilr~l~~~~~~~~~pdyf~v~k~vv~LnDa~~a~~L~~kL~~end 239 (926)
T COG5116 186 VEEEGFRK--EILRMLAEIGPGKPKPDYFYVIKAVVYLNDAEKAKALIEKLVKEND 239 (926)
T ss_pred hhhHHHHH--HHHHHHHHhcCCCCCCcEEEEeEEEEEeccHHHHHHHHHHHHhhhh
Confidence 44433332 4566667777666434467788999999999999999999877543
No 296
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.95 E-value=0.004 Score=64.95 Aligned_cols=83 Identities=12% Similarity=0.136 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 001357 110 FILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRAL 189 (1093)
Q Consensus 110 ~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al 189 (1093)
++.|+..|..++.++|.....+..++.+++..++...|+..|..++.++|+....+-..+.....+|++.+|...+..++
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~ 209 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALAC 209 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhC
Q 001357 190 QVH 192 (1093)
Q Consensus 190 ~~~ 192 (1093)
+++
T Consensus 210 kld 212 (377)
T KOG1308|consen 210 KLD 212 (377)
T ss_pred hcc
Confidence 544
No 297
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.94 E-value=1.2 Score=48.70 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCh
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK----GEVEQASSAFKIVLEADRDNVPALLGQACVEFN----RGRY 178 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~ 178 (1093)
...+..|...+..+... .++...+.++.+|... .+..+|...|..+. ...++.+.+.+|.++.. ..++
T Consensus 54 ~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 54 PPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred cccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCH
Confidence 34556778887777652 2336677777777655 35788999988544 44577888888888877 4588
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-hhHHhH
Q 001357 179 SDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG-------QLGKARQAFQRALQLDPENVEALVALAVMDLQA-NEAAGI 250 (1093)
Q Consensus 179 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~-~~~~~~ 250 (1093)
.+|..+|.++....-.......+.+|.+|..-. +...|...|.++-... ++.+...+|.+|..- |-..++
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCH
Confidence 999999999988754431233566777776642 2336777777776654 677777777666553 323347
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 001357 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTG 282 (1093)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g 282 (1093)
.+|+..|.++..... ....+.++ +++..|
T Consensus 208 ~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 208 KKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 888888888877665 66666666 555555
No 298
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.91 E-value=0.013 Score=39.32 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Q 001357 753 LLYLARTHYEAEQWQDCKKSLLRAIHLAPS 782 (1093)
Q Consensus 753 l~~la~~~~~~g~~~~A~~~~~~al~~~P~ 782 (1093)
++.+|.++...|++++|..+|++++..+|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344444444444444444444444444443
No 299
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=5 Score=46.95 Aligned_cols=134 Identities=10% Similarity=0.018 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhC-CC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCch--hHHHHHHHHHHHhcCH
Q 001357 655 THLEKAKELYTRVIVQH-TS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMP--DVWINLAHVYFAQGNF 730 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~-p~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~--~~~~~lg~~~~~~g~~ 730 (1093)
|+.+.|-.+.++++.-. |- -..-.+.++..|+-.|+...-..++.-++. +++ ++. .+...+|.+++ .++
T Consensus 515 grqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~n----DDVrRaAVialGFVl~--~dp 587 (929)
T KOG2062|consen 515 GRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVN----DDVRRAAVIALGFVLF--RDP 587 (929)
T ss_pred hhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccc----hHHHHHHHHHheeeEe--cCh
Confidence 55556666666655422 11 112234555556656655443333333222 111 111 12223333333 244
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC---cchhhHHHHHHHHH
Q 001357 731 ALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN---YTLRFDAGVAMQKF 797 (1093)
Q Consensus 731 ~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~ 797 (1093)
+.-....+-..+.|...-...+-..||.+|.-.|. .+|+.+++-+.. +|.+ ..+...+|+++-++
T Consensus 588 ~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhc
Confidence 44444433322221100012333456666666665 456777766655 5554 23444555554443
No 300
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.82 E-value=0.0045 Score=64.56 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=80.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCH
Q 001357 134 KGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQL 213 (1093)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 213 (1093)
.+.-.+..|.++.|+..|..++.++|.+...+...+.+++.+++...|+..|..++.++|+. ..-+-..|.....+|++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds-a~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS-AKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc-ccccchhhHHHHHhhch
Confidence 45556777889999999999999999999999999999999999999999999999999988 55566788888889999
Q ss_pred HHHHHHHHHHHhhCCC
Q 001357 214 GKARQAFQRALQLDPE 229 (1093)
Q Consensus 214 ~~A~~~~~~al~~~p~ 229 (1093)
.+|...|..+.+++-+
T Consensus 199 e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999988887643
No 301
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.80 E-value=0.021 Score=38.28 Aligned_cols=32 Identities=22% Similarity=0.545 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcC
Q 001357 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYY 746 (1093)
Q Consensus 715 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 746 (1093)
++++++|.+|...|++++|+..|+.++..||+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 47899999999999999999999999999875
No 302
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.75 E-value=0.14 Score=48.34 Aligned_cols=85 Identities=16% Similarity=0.233 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 208 (1093)
..++....+.+..++.+.+..++.-+--+.|..+..-+.-|.+++..|+|.+|+.+|+.+....|.. +...-.++.|++
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL~ 89 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHHH
Confidence 3556666777778888888888888888888888888888888888999999999888887777777 666777888888
Q ss_pred HcCCHH
Q 001357 209 KLGQLG 214 (1093)
Q Consensus 209 ~~g~~~ 214 (1093)
.+|+..
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 887754
No 303
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.69 E-value=0.016 Score=39.89 Aligned_cols=28 Identities=29% Similarity=0.541 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 716 VWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 716 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
+|.+||.+|..+|++++|+.+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777777777777777777776544
No 304
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=2.5 Score=43.35 Aligned_cols=177 Identities=13% Similarity=0.077 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHH
Q 001357 449 EVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVL 528 (1093)
Q Consensus 449 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 528 (1093)
.+-..++.++++.|.|.+|+......+..-. ..+..+....++
T Consensus 126 ~Le~Kli~l~y~~~~YsdalalIn~ll~ElK-------------------------------------k~DDK~~Li~vh 168 (421)
T COG5159 126 ELECKLIYLLYKTGKYSDALALINPLLHELK-------------------------------------KYDDKINLITVH 168 (421)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-------------------------------------hhcCccceeehh
Confidence 3445678889999999999998877665210 011345566677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH-----hcCChHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHc---CCChhHHHH
Q 001357 529 FNLARLLEQIHDTVAASVLYRLILF-----KYQDYVDAYLR--LAAIAKARNNLQLSIELVNEALKVN---GKYPNALSM 598 (1093)
Q Consensus 529 ~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~ 598 (1093)
..-..+|....+..++...+..+-. -+|....+-.- -|..++.-.+|..|..+|-++++-. ..+..+...
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~s 248 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVS 248 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHH
Confidence 7777888888887777776665543 23443333322 2344566678899999998887754 223333332
Q ss_pred hhhhh---hcccchHHHHHHHH--HhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCC
Q 001357 599 LGDLE---LKNDDWVKAKETFR--AASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS 673 (1093)
Q Consensus 599 l~~~~---~~~g~~~~A~~~~~--~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 673 (1093)
+-.+. ...+..++....+. ..++........+....+.. |... . ..++..|+.-|..-+..+|-
T Consensus 249 LkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea-~~NR--s--------L~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 249 LKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEA-FGNR--S--------LKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHH-hCCC--c--------HhhHHHHHHHhhHHhccCHH
Confidence 22221 12233333333222 22222223334444444433 2211 1 16777788777777665553
No 305
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.59 E-value=0.022 Score=38.55 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 001357 199 IRLGIGLCRYKLGQLGKARQAFQRALQLDP 228 (1093)
Q Consensus 199 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 228 (1093)
+++.+|.++..+|++++|...|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455566666666666666666666666555
No 306
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.50 E-value=0.023 Score=38.40 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 001357 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (1093)
Q Consensus 752 ~l~~la~~~~~~g~~~~A~~~~~~al~~~P 781 (1093)
+++.+|.+|...|++++|...|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555555555555555555555555555
No 307
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.34 Score=56.02 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 001357 889 ALAEEARRKAEEQK 902 (1093)
Q Consensus 889 ~~~~~~~~~~~~~~ 902 (1093)
+++++++|++++++
T Consensus 243 ~eeEEer~~ee~E~ 256 (1064)
T KOG1144|consen 243 REEEEERRREEEEA 256 (1064)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 308
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=6.3 Score=44.75 Aligned_cols=95 Identities=12% Similarity=0.071 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRD----NVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
...+.+.......|.++...+..+..+...|+.+.|+..+...+. +. ....++.+|.++.-+.+|..|-..+..
T Consensus 251 ~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 444555555566777777777778888778887777777776665 21 134567777777778888888888877
Q ss_pred HHHhCCCChHHHHHHHHHHHH
Q 001357 188 ALQVHPSCPGAIRLGIGLCRY 208 (1093)
Q Consensus 188 al~~~p~~~~~~~~~la~~~~ 208 (1093)
+...+.-+.....+..|.|++
T Consensus 329 L~desdWS~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYFAGCCLL 349 (546)
T ss_pred HHhhhhhhHHHHHHHHHHHHh
Confidence 777665553333333444443
No 309
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.41 E-value=0.065 Score=40.31 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHH
Q 001357 751 QILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGV 792 (1093)
Q Consensus 751 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 792 (1093)
..++++|.++++.|++.+|..+.+.++++.|+|..+.-....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 468899999999999999999999999999999665444333
No 310
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.40 E-value=0.23 Score=43.54 Aligned_cols=103 Identities=22% Similarity=0.170 Sum_probs=52.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhh
Q 001357 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPG--AIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANE 246 (1093)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~ 246 (1093)
|.-++..|++-+|+++.+.++..++++.. .++...|.++..+. ......+....+
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~y----------- 59 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRY----------- 59 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHH-----------
Confidence 45566666666666666666666655521 33444444443322 111111111111
Q ss_pred HHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 001357 247 AAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAV 297 (1093)
Q Consensus 247 ~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 297 (1093)
...+++.|.++..+.|..+..++.+|.-+-....|+++..-.++++..
T Consensus 60 ---Ll~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 60 ---LLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 223445555556666666666666666655556666666666665543
No 311
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=7.7 Score=44.07 Aligned_cols=254 Identities=16% Similarity=0.107 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001357 251 RKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (1093)
Q Consensus 251 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (1093)
....+.+.......|+++......+..+...|+.+.|+..++..+. ..........++.+|.++..+.+|..|...+..
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP-IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4445555666677788888888888888888887777777776654 111112234566677777777888888888877
Q ss_pred HHHhcCCCCCchhh-HH-HHHHHHHH--------cCCHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001357 331 SVKEINKPHEFIFP-YY-GLGQVQLK--------LGDFRSALTNFEKVL---EIYPDNCETLKALGHIYVQLGQIEKAQE 397 (1093)
Q Consensus 331 al~~~~~~~~~~~~-~~-~la~~~~~--------~g~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~g~~~~A~~ 397 (1093)
..+. .+...+ |. ..|.+++. .|+-+.|..+++... ...|.+..+-.. -..++.+
T Consensus 329 L~de----sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f---------~~RKver 395 (546)
T KOG3783|consen 329 LRDE----SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF---------IVRKVER 395 (546)
T ss_pred HHhh----hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH---------HHHHHHH
Confidence 7652 111122 21 22233321 223333333333222 111211111000 0011111
Q ss_pred HHHHHHHhCCCCHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 001357 398 LLRKAAKIDPRDAQ--AFIDLGELL---ISSDTGAALDAFKTARTLLKKAGEEVPI--EVLNNIGVIHFEKGEFESAHQS 470 (1093)
Q Consensus 398 ~l~~~l~~~p~~~~--~~~~la~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~ 470 (1093)
+-.+.- +++..+. .++.++.++ ......+.. -+... -..+... ..+. -.+..+|.++...|+...|..+
T Consensus 396 f~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~-~~~~~~~-d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~ 471 (546)
T KOG3783|consen 396 FVKRGP-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAE-LENPKID-DSDDEGLKYLLKGVILRNLGDSEVAPKC 471 (546)
T ss_pred Hhcccc-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHH-HhccCCC-CchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 111110 1111222 234555544 222222222 11111 1112222 2222 3445679999999999999999
Q ss_pred HHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCC-hHHHHHHHH
Q 001357 471 FKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHD-TVAASVLYR 549 (1093)
Q Consensus 471 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~ 549 (1093)
|...+.... .......-.+.++|.+|.++...|. ..++..++.
T Consensus 472 f~i~~~~e~------------------------------------~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~ 515 (546)
T KOG3783|consen 472 FKIQVEKES------------------------------------KRTEDLWAVPFALYELALLYWDLGGGLKEARALLL 515 (546)
T ss_pred HHHHHHHHH------------------------------------hhccccccccHHHHHHHHHHHhcccChHHHHHHHH
Confidence 998876310 0001233466789999999999988 899999998
Q ss_pred HHHHhcCCh
Q 001357 550 LILFKYQDY 558 (1093)
Q Consensus 550 ~~l~~~p~~ 558 (1093)
++-....++
T Consensus 516 kAr~~~~dY 524 (546)
T KOG3783|consen 516 KAREYASDY 524 (546)
T ss_pred HHHhhcccc
Confidence 887765443
No 312
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=1.7 Score=49.18 Aligned_cols=158 Identities=20% Similarity=0.191 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHhc------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C------------
Q 001357 108 EHFILATQYYNKASRI------------DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEA-----D------------ 158 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~------------ 158 (1093)
.-|++|...|.-+... +|.+...++.++.++..+|+.+-|..+..++|-. .
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3455666666655433 4667788999999999999988888877776521 1
Q ss_pred ----CCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHH-----Hh
Q 001357 159 ----RDNV---PALLGQACVEFNRGRYSDSLEFYKRALQVHPS-CPGAIRLGIGLCRYKLGQLGKARQAFQRA-----LQ 225 (1093)
Q Consensus 159 ----p~~~---~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a-----l~ 225 (1093)
|.|- .+++.....+.+.|-+..|+.+++-++.++|. ++..+.+.+-...++..+|.--+..++.. +.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 2222 23444555667789999999999999999998 65555565556666667777666666655 22
Q ss_pred hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCC
Q 001357 226 LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPY 266 (1093)
Q Consensus 226 ~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~ 266 (1093)
.-| |...-+.+|..+........-..|...+.+|+...|.
T Consensus 412 ~~P-N~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 412 QLP-NFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hcC-CchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 334 3344456666666665544466788888888888764
No 313
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=5.7 Score=42.11 Aligned_cols=169 Identities=11% Similarity=0.064 Sum_probs=91.2
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHHHH----hC--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccCC---CCC-ch
Q 001357 236 ALAVMDLQANEAAGIRKGMEKMQRAFE----IY--PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNH---GPT-KS 305 (1093)
Q Consensus 236 ~la~~~~~~~~~~~~~~Al~~~~~al~----~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~-~~ 305 (1093)
.+..+|...++ |.+|+......+. ++ +.-..+...-...|+...+..+|...+..+....+. +|. .+
T Consensus 133 rli~Ly~d~~~---YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa 209 (411)
T KOG1463|consen 133 RLIRLYNDTKR---YTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQA 209 (411)
T ss_pred HHHHHHHhhHH---HHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHH
Confidence 45556666665 7777766554433 22 122334444456677777777766666555533221 111 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhh---HHHHHHHHHHcCCHHHHHHHH--HHHHHhCCCcHHHHH
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFP---YYGLGQVQLKLGDFRSALTNF--EKVLEIYPDNCETLK 380 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~--~~~l~~~p~~~~~~~ 380 (1093)
..-..-|..+....+|..|..+|-.+.+.+..-.+.+.+ +-.+..+-+..+..++.-.++ ..+++.......++.
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 222233555666677888888888887755433332333 223334444555555544443 334454555667777
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHhCC
Q 001357 381 ALGHIYVQL--GQIEKAQELLRKAAKIDP 407 (1093)
Q Consensus 381 ~la~~~~~~--g~~~~A~~~l~~~l~~~p 407 (1093)
.++.++... .+|+.|+.-|..=+..+|
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 777776554 366777777766655444
No 314
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.02 E-value=0.73 Score=43.63 Aligned_cols=122 Identities=13% Similarity=0.107 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHH
Q 001357 655 THLEKAKELYTRVIVQHTSN--LYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFAL 732 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~ 732 (1093)
+..++|+..|..+-..+-.+ +.+....+.+..+.|+...|+..|..+-...|-+.. ....+...-+.++...|-|+.
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~-~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI-GRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch-hhHHHHHHHHHHHhccccHHH
Confidence 67788888888776655443 445667788999999999999999999876642211 112344556778889999988
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 001357 733 AMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 778 (1093)
Q Consensus 733 A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 778 (1093)
-....+..... .++-....-..||.+-++.|++..|.+.|..+..
T Consensus 151 V~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 151 VSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77775553321 1222266777899999999999999999998877
No 315
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.88 E-value=0.28 Score=42.07 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHcCC
Q 001357 148 SSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC-PGAIRLGIGLCRYKLGQ 212 (1093)
Q Consensus 148 ~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~la~~~~~~g~ 212 (1093)
+..++..+..+|+++.+.+.+|..+...|++++|+..+-.+++.++.. ....+-.+-.++-.+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 345566666677777777777777777777777777777776666554 23334444444444444
No 316
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.84 E-value=0.36 Score=45.69 Aligned_cols=82 Identities=16% Similarity=0.051 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH-HHHH
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFY-KRAL 189 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~-~~al 189 (1093)
..+..++.-+--+.|..+..-+.-|.+++..|+|.+|+.+|+.+....|..+.+--.++.|++..|+.. ...| ..++
T Consensus 27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~--Wr~~A~evl 104 (160)
T PF09613_consen 27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS--WRRYADEVL 104 (160)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH--HHHHHHHHH
Confidence 388888888888899999999999999999999999999999999999999999999999999998864 2333 3344
Q ss_pred HhCCC
Q 001357 190 QVHPS 194 (1093)
Q Consensus 190 ~~~p~ 194 (1093)
...++
T Consensus 105 e~~~d 109 (160)
T PF09613_consen 105 ESGAD 109 (160)
T ss_pred hcCCC
Confidence 44443
No 317
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.82 E-value=0.27 Score=50.10 Aligned_cols=71 Identities=13% Similarity=0.229 Sum_probs=49.5
Q ss_pred chhHHHHHHHHHHHhcCHHHHHHHHHH-------HHHhhcCCC----CHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 001357 713 MPDVWINLAHVYFAQGNFALAMKMYQN-------CLRKFYYNT----DAQILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (1093)
Q Consensus 713 ~~~~~~~lg~~~~~~g~~~~A~~~~~~-------al~~~~~~~----~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P 781 (1093)
.+.++..+||+|..+|+......++++ ++.....+. ...+++.+|.+.++.|++++|+++|.+++...-
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 456777888888888885544444444 444322222 167888899999999999999999999887654
Q ss_pred CC
Q 001357 782 SN 783 (1093)
Q Consensus 782 ~~ 783 (1093)
.+
T Consensus 197 ~s 198 (214)
T PF09986_consen 197 AS 198 (214)
T ss_pred CC
Confidence 33
No 318
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.76 E-value=0.14 Score=38.54 Aligned_cols=42 Identities=21% Similarity=0.069 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 171 (1093)
.++.+|..+++.|+|.+|..+++.+++..|+|..+......+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 456677777777777777777777777777777666554443
No 319
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=6.8 Score=41.59 Aligned_cols=276 Identities=16% Similarity=0.133 Sum_probs=156.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEA--DRDN--------VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRL 201 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 201 (1093)
+.++.......+++++...|..++.. .|.+ ....+.++.++.+.|++.+-..+....-.. +.
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf--------~~ 79 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPF--------LS 79 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH--------HH
Confidence 55666666777778888888887763 2222 245667777777777776655544433211 11
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 001357 202 GIGLCRYKLGQLGKARQAFQRALQLDP---ENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHF 278 (1093)
Q Consensus 202 ~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~ 278 (1093)
.++. ..|....+..+...+ ++...-..+..-...-. -.+-..++++. .-..++.+|
T Consensus 80 ~v~K--------akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA----~~ekRtFLRq~---------Learli~Ly 138 (411)
T KOG1463|consen 80 SVSK--------AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWA----KREKRTFLRQS---------LEARLIRLY 138 (411)
T ss_pred Hhhh--------HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHH----HHHhHHHHHHH---------HHHHHHHHH
Confidence 1111 122222222222222 22211111111000000 01111222222 224578899
Q ss_pred HHcCChHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC---CCCCc-hhhHHHHHHH
Q 001357 279 FFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN---KPHEF-IFPYYGLGQV 351 (1093)
Q Consensus 279 ~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~-~~~~~~la~~ 351 (1093)
+..++|.+|+.+....++. .++.+...+++..-..+|+...+..+|...+..+....+ -+|.. ...=+.-|.+
T Consensus 139 ~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIl 218 (411)
T KOG1463|consen 139 NDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGIL 218 (411)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccce
Confidence 9999999999998887743 333445566777778889999999999988887764321 11111 1111223555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHH---
Q 001357 352 QLKLGDFRSALTNFEKVLEIYP------DNCETLKALGHIYVQLGQIEKAQELLR--KAAKIDPRDAQAFIDLGELL--- 420 (1093)
Q Consensus 352 ~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~--~~l~~~p~~~~~~~~la~~~--- 420 (1093)
+....+|.-|..+|-.+++-+. .-..++..+..|-...+..++...++. .+++....+..+....+..+
T Consensus 219 ha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nR 298 (411)
T KOG1463|consen 219 HAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNR 298 (411)
T ss_pred eecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCC
Confidence 6666899999999999887542 123455556666667777776655553 34555666788888888888
Q ss_pred hcCCHHHHHHHHHHHH
Q 001357 421 ISSDTGAALDAFKTAR 436 (1093)
Q Consensus 421 ~~~~~~~A~~~~~~a~ 436 (1093)
...+|..|+.-|..-+
T Consensus 299 SLkdF~~AL~~yk~eL 314 (411)
T KOG1463|consen 299 SLKDFEKALADYKKEL 314 (411)
T ss_pred cHHHHHHHHHHhHHHH
Confidence 3346666666665433
No 320
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.43 E-value=3.8 Score=39.00 Aligned_cols=126 Identities=13% Similarity=0.099 Sum_probs=73.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHH
Q 001357 134 KGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC---PGAIRLGIGLCRY 208 (1093)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~~la~~~~ 208 (1093)
.+.-+.+.+..++|+..|..+-+..-.+ ..+.+..|.+....|+-..|+..|..+-...|.. ....++.-+.++.
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 3444455667777777777665544333 3455666777777777777777777766554332 1234556666666
Q ss_pred HcCCHHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Q 001357 209 KLGQLGKARQAFQRAL-QLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE 262 (1093)
Q Consensus 209 ~~g~~~~A~~~~~~al-~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~ 262 (1093)
..|-|+.-....+.+- ..+|-...+.-.||...++.|+ +..|...|..+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc
Confidence 6776666555444322 1233344555566666666666 6666666665544
No 321
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.37 E-value=0.19 Score=51.65 Aligned_cols=63 Identities=19% Similarity=0.275 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQA 169 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 169 (1093)
+|..++|..+|..++.+.|.++.++...|...-..++.-+|-.+|-+++..+|.|..++...+
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 444445555555555555555555555555555555555555555555555555555554444
No 322
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=7.9 Score=39.94 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=96.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHh---ccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCCCchhhH-
Q 001357 272 NYLANHFFFTGQHFLVEQLTETALA---VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN--KPHEFIFPY- 345 (1093)
Q Consensus 272 ~~la~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~- 345 (1093)
..++.+++..|.|.+|+.+....+. ..+..+.....+..-..+|+...+..++...+..+..... -.|....+.
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 4567888999999999998887763 3344455667777778888888888888877766654221 112222222
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHH---HHHHHHHcCCHHHHHHHHHH--HHH-hCCCCHHHHHH
Q 001357 346 -YGLGQVQLKLGDFRSALTNFEKVLEIYP---DNCETLKA---LGHIYVQLGQIEKAQELLRK--AAK-IDPRDAQAFID 415 (1093)
Q Consensus 346 -~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~---la~~~~~~g~~~~A~~~l~~--~l~-~~p~~~~~~~~ 415 (1093)
+.-|...+...+|.-|..+|-.+++-.. .+..++.. +...-...+..++...++.. .++ .+.....+...
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~a 288 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLA 288 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence 2234555667789999999988887542 23333222 22222333444544444332 122 23445666666
Q ss_pred HHHHH---hcCCHHHHHHHHHH
Q 001357 416 LGELL---ISSDTGAALDAFKT 434 (1093)
Q Consensus 416 la~~~---~~~~~~~A~~~~~~ 434 (1093)
.+..+ ...++..|+.-|..
T Consensus 289 vaea~~NRsL~df~~aL~qY~~ 310 (421)
T COG5159 289 VAEAFGNRSLKDFSDALAQYSD 310 (421)
T ss_pred HHHHhCCCcHhhHHHHHHHhhH
Confidence 77777 33456666665544
No 323
>PRK10941 hypothetical protein; Provisional
Probab=93.99 E-value=0.43 Score=50.38 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=31.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.+.|.+..|+..++..+...|++
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 3344445555555555555555555555555555555555555555555555555555544
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.97 E-value=1.6 Score=40.67 Aligned_cols=84 Identities=11% Similarity=0.067 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK 209 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 209 (1093)
.++......+..++++++..++..+--+.|+.+..-+.-|.+++..|+|.+|+.+|+.+....+.. +...-.++.|+..
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~a 90 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHh
Confidence 344445555568888888888888888889888888888889999999999999998888877776 5566778888888
Q ss_pred cCCHH
Q 001357 210 LGQLG 214 (1093)
Q Consensus 210 ~g~~~ 214 (1093)
+|+.+
T Consensus 91 l~Dp~ 95 (153)
T TIGR02561 91 KGDAE 95 (153)
T ss_pred cCChH
Confidence 87653
No 325
>PRK12798 chemotaxis protein; Reviewed
Probab=93.88 E-value=6.9 Score=43.26 Aligned_cols=201 Identities=14% Similarity=0.010 Sum_probs=134.9
Q ss_pred HHHHHHcCC-ChhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHH
Q 001357 583 NEALKVNGK-YPNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1093)
Q Consensus 583 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1093)
+..+..++. +.+....-|.+-+-.|+..++...+..+....-......++.|........ .+...|+
T Consensus 101 r~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~------------~dP~~Al 168 (421)
T PRK12798 101 RKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVA------------TDPATAL 168 (421)
T ss_pred HHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcc------------cCHHHHH
Confidence 333444432 444555666667778999999888887655443334444544444322333 7789999
Q ss_pred HHHHHHHhhCCCCH--HHHH-HHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHH
Q 001357 662 ELYTRVIVQHTSNL--YAAN-GAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQ 738 (1093)
Q Consensus 662 ~~~~~~l~~~p~~~--~a~~-~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 738 (1093)
.+|+.+-=.-|... .+.. .-..+....|+.+++..+-.+.+..+..|+|..+-.-.|..+.+-+. .+. -...+.
T Consensus 169 ~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~-d~~--~~~~l~ 245 (421)
T PRK12798 169 KLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD-DEI--RDARLV 245 (421)
T ss_pred HHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcc-ccc--cHHHHH
Confidence 99999988888843 2333 33445578899999999999999999888776654444444444333 222 223367
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHH
Q 001357 739 NCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQKFSA 799 (1093)
Q Consensus 739 ~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~~~ 799 (1093)
.++..+.......+|..+++.-.-.|+.+-|.-.-.+++.+... ...-...+.+|+..+.
T Consensus 246 ~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aaa~ 305 (421)
T PRK12798 246 EILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADP-DSADAARARLYRGAAL 305 (421)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHHHHc
Confidence 77777644444789999999999999999999999999999844 4445555666665544
No 326
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.87 E-value=8.1 Score=44.08 Aligned_cols=156 Identities=16% Similarity=0.107 Sum_probs=108.3
Q ss_pred cCChHHHHHHHHHHHHh------------cCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc----------------
Q 001357 538 IHDTVAASVLYRLILFK------------YQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN---------------- 589 (1093)
Q Consensus 538 ~g~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 589 (1093)
..-|++|...|.-+... +|-.++.++.++.++..+|+.+.|..++.+++=..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34556666666655543 45568899999999999999988887777765421
Q ss_pred -----CCChh---HHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHH
Q 001357 590 -----GKYPN---ALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAK 661 (1093)
Q Consensus 590 -----p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~ 661 (1093)
|.+-. +++.....+.+.|-|..|..+.+-++++.|..|+++...+.++ |...+ .+|.--+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~-~ALra-----------reYqwiI 398 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDI-YALRA-----------REYQWII 398 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHH-HHHHH-----------HhHHHHH
Confidence 22222 2333444556778999999999999999999899988888888 54431 6666666
Q ss_pred HHHHHH-----HhhCCCCHHHHHHHHHHHHhcCC---chhHHHHHHHHHHHhc
Q 001357 662 ELYTRV-----IVQHTSNLYAANGAGVVLAEKGQ---FDVSKDLFTQVQEAAS 706 (1093)
Q Consensus 662 ~~~~~~-----l~~~p~~~~a~~~la~~~~~~g~---~~~A~~~~~~~~~~~p 706 (1093)
.+++.. +..-|+-.+. ..+|..|.+... -..|+..+.+++...|
T Consensus 399 ~~~~~~e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 399 ELSNEPENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 666655 4445654433 356666666554 5788888999988776
No 327
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.79 E-value=0.37 Score=47.61 Aligned_cols=65 Identities=22% Similarity=0.150 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK 333 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 333 (1093)
.++..+|.+|...|+++.|++.|.++...........+.++.+.++.+..+++..+..++.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555666666666666666666665554444444455566666666666666666666555554
No 328
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.73 E-value=0.51 Score=40.42 Aligned_cols=66 Identities=18% Similarity=0.060 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCh
Q 001357 113 ATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDN--VPALLGQACVEFNRGRY 178 (1093)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~ 178 (1093)
.+..+...+..+|.+..+.+.+|..++..|+++.|+..|-.++..+++. ..+...+..++-..|.-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4667788889999999999999999999999999999999999988765 44555555555444443
No 329
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.64 E-value=0.12 Score=35.38 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 001357 131 WVGKGQLLLAKGEVEQASSAFKI 153 (1093)
Q Consensus 131 ~~~~a~~~~~~g~~~~A~~~~~~ 153 (1093)
|..+|.+|...|+|++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555555
No 330
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.52 E-value=1.1 Score=40.68 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 001357 161 NVPALLGQACVEFNRG---RYSDSLEFYKRALQ-VHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVA 236 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g---~~~~Al~~~~~al~-~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 236 (1093)
.....+.+|.++.+.. +..+.+.+++.+++ -.|...-...+.++..++++++|+.++.+....++..|+|..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4556777777777664 45677888888886 5666666677778888888888888888888888888888877554
Q ss_pred HHH
Q 001357 237 LAV 239 (1093)
Q Consensus 237 la~ 239 (1093)
--.
T Consensus 111 k~~ 113 (149)
T KOG3364|consen 111 KET 113 (149)
T ss_pred HHH
Confidence 433
No 331
>PRK10941 hypothetical protein; Provisional
Probab=93.47 E-value=0.7 Score=48.78 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=67.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001357 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~ 420 (1093)
..++-.+|...++++.|+.+.+.++...|+++.-+.-.|.+|.+.|.+..|...++..+...|+++.+-.....+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 4556788999999999999999999999999999999999999999999999999999999999988776555544
No 332
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.39 E-value=0.27 Score=50.59 Aligned_cols=69 Identities=26% Similarity=0.403 Sum_probs=47.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
.-..+.|+.++|..+|+.++.+.|.+ +.++..+|......++.-+|-.+|-+++.++|.|..++.+.+.
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~-p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTN-PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCC-HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 33456677777777777777777777 5666777777766677777777777777777777777666553
No 333
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.35 E-value=0.66 Score=45.81 Aligned_cols=104 Identities=10% Similarity=0.179 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC----HH
Q 001357 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQ 751 (1093)
Q Consensus 676 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~ 751 (1093)
.++..+|..|.+.|+++.|+..|.++.+...++. ...++++++..+.+..|++.....+..++-.......+ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPG--HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4678899999999999999999999988653221 35678888899999999999999999998877655444 23
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Q 001357 752 ILLYLARTHYEAEQWQDCKKSLLRAIHLAP 781 (1093)
Q Consensus 752 ~l~~la~~~~~~g~~~~A~~~~~~al~~~P 781 (1093)
+-.+-|..+...+++..|.+.|-.+..-..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 444667788889999999999877765544
No 334
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.33 E-value=24 Score=42.78 Aligned_cols=215 Identities=9% Similarity=-0.067 Sum_probs=114.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001357 346 YGLGQVQLKLGDFRSALTNFEKVLEIYPDNC----ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLI 421 (1093)
Q Consensus 346 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~ 421 (1093)
..++..-....+.+.|...+........-+. .++..+|.-....+...+|...+..+.....+....-..+-..+.
T Consensus 245 ~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~ 324 (644)
T PRK11619 245 AAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALG 324 (644)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHH
Confidence 3344445566778889988887655443222 234444444444433667777777655433222222222222237
Q ss_pred cCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHH
Q 001357 422 SSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQ 501 (1093)
Q Consensus 422 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (1093)
.+++......+..+.... .......+-+|..+...|+.++|..+|..+......... +.
T Consensus 325 ~~dw~~~~~~i~~L~~~~-----~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~----------------LA 383 (644)
T PRK11619 325 TGDRRGLNTWLARLPMEA-----KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPM----------------VA 383 (644)
T ss_pred ccCHHHHHHHHHhcCHhh-----ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHH----------------HH
Confidence 788887766666532221 124678888999989999999999999998552110000 00
Q ss_pred hhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHH
Q 001357 502 FKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIEL 581 (1093)
Q Consensus 502 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 581 (1093)
...++.--.+....................+..+...|....|...+..++.. . +......++.+....|.++.++..
T Consensus 384 a~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~-~~~~~~~la~~A~~~g~~~~ai~~ 461 (644)
T PRK11619 384 AQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS-R-SKTEQAQLARYAFNQQWWDLSVQA 461 (644)
T ss_pred HHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 00000000000000000000000112344566667777777777777766654 2 244556666667777777766655
Q ss_pred HH
Q 001357 582 VN 583 (1093)
Q Consensus 582 ~~ 583 (1093)
..
T Consensus 462 ~~ 463 (644)
T PRK11619 462 TI 463 (644)
T ss_pred Hh
Confidence 43
No 335
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=93.32 E-value=12 Score=39.33 Aligned_cols=199 Identities=15% Similarity=0.084 Sum_probs=106.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 001357 201 LGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFF 280 (1093)
Q Consensus 201 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~ 280 (1093)
+.+-...++..+...-++.-..+++++|....+++.|+.-.... +.+|..+|+++++...... .-......
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~T-----i~~AE~l~k~ALka~e~~y----r~sqq~qh 258 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEATT-----IVDAERLFKQALKAGETIY----RQSQQCQH 258 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhh-----HHHHHHHHHHHHHHHHHHH----hhHHHHhh
Confidence 44556667777888888888889999999999999888654444 6778888888776532111 11111111
Q ss_pred cCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHH
Q 001357 281 TGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRS 360 (1093)
Q Consensus 281 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~ 360 (1093)
.|...+|. .+ .+......+-..++.|..++|+..+|++.++...+.++. ......+-++...+....-|..
T Consensus 259 ~~~~~da~------~r--RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl-~t~lniheNLiEalLE~QAYAD 329 (556)
T KOG3807|consen 259 QSPQHEAQ------LR--RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL-LTMLNIHENLLEALLELQAYAD 329 (556)
T ss_pred hccchhhh------hh--cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 00 001112234456788888999999999999888764321 1112233445555555544444
Q ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHH-------------cCC---HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001357 361 ALTNFEKVLEI-YPDNCETLKALGHIYVQ-------------LGQ---IEKAQELLRKAAKIDPRDAQAFIDLG 417 (1093)
Q Consensus 361 A~~~~~~~l~~-~p~~~~~~~~la~~~~~-------------~g~---~~~A~~~l~~~l~~~p~~~~~~~~la 417 (1093)
...++-+.-.+ -|......+.-+.+-.+ .|- -..|++.+.++++.+|..+..+..+-
T Consensus 330 vqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 330 VQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 44433333222 13333333322222111 111 12456666666666766665554443
No 336
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.28 E-value=17 Score=41.90 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 001357 526 TVLFNLARLLEQIHDTVAASVLYRL 550 (1093)
Q Consensus 526 ~~~~~la~~~~~~g~~~~A~~~~~~ 550 (1093)
.+++..|+.+....++++|.+.|.+
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHH
Confidence 4555555555555566655554443
No 337
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=93.06 E-value=0.0024 Score=48.38 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh-----hhcChh
Q 001357 910 KLEDEQKRLRQQEEHFQRVKEQW-----RSSTPA 938 (1093)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~w-----~~~~~~ 938 (1093)
++.+..++|+.++++..+||||| ||+|+|
T Consensus 26 kkkRk~rlPK~~dp~~~PDPERWLP~~dRS~yrp 59 (59)
T PF08492_consen 26 KKKRKPRLPKNYDPGKTPDPERWLPKRDRSYYRP 59 (59)
T ss_pred hhcccCCCCCCCCCCCCCCccccCchhhhcccCC
Confidence 34455569999999999999999 898875
No 338
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.77 E-value=15 Score=38.89 Aligned_cols=139 Identities=14% Similarity=0.049 Sum_probs=66.7
Q ss_pred CchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHh
Q 001357 522 WNKVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLR--LAAIAKARNNLQLSIELVNEALKVNGKYPNALSML 599 (1093)
Q Consensus 522 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 599 (1093)
..++..+..+|..+.+.|++.+|..+|-. .++...... +.......| .|.....+...
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~-----~~~~~~~~~~~ll~~~~~~~---------------~~~e~dlfi~R 146 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLL-----GTDPSAFAYVMLLEEWSTKG---------------YPSEADLFIAR 146 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHT-----S-HHHHHHHHHHHHHHHHHT---------------SS--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHh-----cCChhHHHHHHHHHHHHHhc---------------CCcchhHHHHH
Confidence 35788999999999999999988877643 222222211 222222222 33444444444
Q ss_pred hh-hhhcccchHHHHHHHHHhhhc----CCC--------CChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHH
Q 001357 600 GD-LELKNDDWVKAKETFRAASDA----TDG--------KDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTR 666 (1093)
Q Consensus 600 ~~-~~~~~g~~~~A~~~~~~~l~~----~~~--------~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~ 666 (1093)
+. -|+..++...|...+...++. .|. +..+.+++...+ ...+..... ...+..-.+.|..
T Consensus 147 aVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~l-Ll~t~e~~~------~~~F~~L~~~Y~~ 219 (260)
T PF04190_consen 147 AVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQL-LLLTCERDN------LPLFKKLCEKYKP 219 (260)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHH-HHHHHHHT-------HHHHHHHHHHTHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHH-HHHHHhcCc------HHHHHHHHHHhCc
Confidence 33 356667888887777665544 221 112233333333 222211110 1345555555666
Q ss_pred HHhhCCCCHHHHHHHHHHHHh
Q 001357 667 VIVQHTSNLYAANGAGVVLAE 687 (1093)
Q Consensus 667 ~l~~~p~~~~a~~~la~~~~~ 687 (1093)
.|+.+|.-...+..+|.+|..
T Consensus 220 ~L~rd~~~~~~L~~IG~~yFg 240 (260)
T PF04190_consen 220 SLKRDPSFKEYLDKIGQLYFG 240 (260)
T ss_dssp ---HHHHTHHHHHHHHHHHH-
T ss_pred cccccHHHHHHHHHHHHHHCC
Confidence 666666666666667776664
No 339
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=92.76 E-value=1.2 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001357 854 VEYCKHLLDAAKIHREAAEREEQ 876 (1093)
Q Consensus 854 ~~~~~~l~~~~~~~~~~~~~~e~ 876 (1093)
+.....+|.+-+...+++++.++
T Consensus 216 v~~~qe~La~~qe~eE~qkreeE 238 (1064)
T KOG1144|consen 216 VRAMQEALAKRQEEEERQKREEE 238 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333333333
No 340
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.73 E-value=1.5 Score=44.74 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHH
Q 001357 423 SDTGAALDAFKTARTLLKKAGEEV--PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASML 500 (1093)
Q Consensus 423 ~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (1093)
..++.|+..|.-|+-...-.+... .+.++..+|++|...|+.+....++++|+.....
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~-------------------- 150 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEE-------------------- 150 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH--------------------
Confidence 345556665555554433222222 2567778888888888876666666666552110
Q ss_pred HhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 001357 501 QFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLILFK 554 (1093)
Q Consensus 501 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 554 (1093)
.+.. .......-+...+.+.+|.+..+.|++++|..+|.+++..
T Consensus 151 ---------a~~~-e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 151 ---------AYEN-EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred ---------HHHh-CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 0000 0000012235678888899999999999999999988864
No 341
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.61 E-value=9 Score=44.06 Aligned_cols=58 Identities=24% Similarity=0.320 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEA-------------DRDNVPALLGQACVEFNRGRYSDSLEFYKR 187 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-------------~p~~~~a~~~la~~~~~~g~~~~Al~~~~~ 187 (1093)
-|-.+|...+..=+++-|.+.|.++-.. .....+--+.+|.++.-.|+|.+|.++|.+
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3666676666666777777777665221 011112234456666666777777766654
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.58 E-value=1.3 Score=41.16 Aligned_cols=69 Identities=14% Similarity=0.060 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYS 179 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 179 (1093)
.++..++.-+--+.|+.+..-+.-|.++...|+|.+|+.+|+.+....+..+.+.-.++.|++.+|+..
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 378888888888899999999999999999999999999999999888888999999999999998754
No 343
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.34 E-value=3.9 Score=36.20 Aligned_cols=98 Identities=11% Similarity=0.063 Sum_probs=64.8
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHhcCCCCC---C----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcC----CCC-
Q 001357 682 GVVLAEKGQFDVSKDLFTQVQEAASGSVFV---Q----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYY----NTD- 749 (1093)
Q Consensus 682 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~~- 749 (1093)
|.-....|.+.+|...+.++.+....-+.. + +.-++-.|+..+..+|+|++++..-..+|..|.. ..+
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 333445677788888888777765321100 1 2334556677788999999999999999988743 223
Q ss_pred ----HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001357 750 ----AQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1093)
Q Consensus 750 ----~~~l~~la~~~~~~g~~~~A~~~~~~al~~ 779 (1093)
..+.+.-+.++...|+.++|++.|+.+-++
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 344556788888999999999999887653
No 344
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.22 E-value=0.24 Score=32.26 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRD 160 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 160 (1093)
+++.+|.++...|+++.|...|..++...|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555556666666666666666655555543
No 345
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.22 E-value=21 Score=39.25 Aligned_cols=339 Identities=13% Similarity=0.018 Sum_probs=162.1
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHh--CCCChHHH
Q 001357 124 DMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADR-DNVPALLGQAC-VEFNRGRYSDSLEFYKRALQV--HPSCPGAI 199 (1093)
Q Consensus 124 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la~-~~~~~g~~~~Al~~~~~al~~--~p~~~~~~ 199 (1093)
-|.-+..+..+..-+++--..+.|..+|+..-.... -+..++.++.. .-+..| .++...++.. .|+. ..
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-----K~Lv~EMisqkm~Pnl--~T 275 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-----KKLVAEMISQKMTPNL--FT 275 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-----HHHHHHHHHhhcCCch--Hh
Confidence 355555555444444444778899999988754332 23344443322 233333 5566666554 4654 66
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH---------hC
Q 001357 200 RLGIGLCRYKLGQLGKARQAFQRALQ------LDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFE---------IY 264 (1093)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~---------~~ 264 (1093)
+..+-.|..+.|+++.|+..+.+++. .+|.-.. ++.+.....+.+++ ...+...+..... +.
T Consensus 276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsS-yh~iik~f~re~dp--~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSS-YHLIIKNFKRESDP--QKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhh-HHHHHHHhcccCCc--hhhhHHHHHHHHHhhccCcccCCC
Confidence 78888999999999999998887764 3564443 33333444444441 2234444433332 23
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHhccC---CCCCc--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 001357 265 PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTN---HGPTK--SHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPH 339 (1093)
Q Consensus 265 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 339 (1093)
|.+...+.....++....+.+-|.++..-.-...+ ..+.. ...+..+-.+.++....+.-+..|..++-..-.+.
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 55544444444555577777776666544332111 01111 11222333444555566666677766653211111
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------CCCcH---HHHHHHHHHHHHcCCHHHH
Q 001357 340 EFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI---------------------YPDNC---ETLKALGHIYVQLGQIEKA 395 (1093)
Q Consensus 340 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------------------~p~~~---~~~~~la~~~~~~g~~~~A 395 (1093)
.... ..+-.+.--.|.++---.++...... +|..+ ..-...+.|... +.++
T Consensus 433 ~~~m--~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad---~~e~ 507 (625)
T KOG4422|consen 433 SQTM--IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAAD---IKEA 507 (625)
T ss_pred chhH--HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH---HHHH
Confidence 1111 11111222222222222222111111 12111 111111111110 1111
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 396 QELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1093)
Q Consensus 396 ~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 474 (1093)
.+.-..-+....-.+.....++.++ +.|.+++|.+.+.-..+............++..+.......+...+|+.+++-+
T Consensus 508 ~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 508 YESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1111111111122345556666677 888999888877665432222212222344445556666778888888888888
Q ss_pred Hhc
Q 001357 475 LGD 477 (1093)
Q Consensus 475 l~~ 477 (1093)
+..
T Consensus 588 ~~~ 590 (625)
T KOG4422|consen 588 SAF 590 (625)
T ss_pred HHc
Confidence 663
No 346
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.18 E-value=0.24 Score=32.31 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 716 VWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 716 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
+++++|.++...|++..|+..|+.+++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4455555555555555555555555543
No 347
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.99 E-value=7.7 Score=34.44 Aligned_cols=97 Identities=16% Similarity=0.066 Sum_probs=59.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhh
Q 001357 421 ISSDTGAALDAFKTARTLLKKAGEEV-------PIEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVI 493 (1093)
Q Consensus 421 ~~~~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 493 (1093)
..|-+++|...+.+++.+....+... +..++..|+..+..+|+|++++..-..++.--
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF--------------- 85 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF--------------- 85 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH---------------
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH---------------
Confidence 45667777777777776655443221 13455667778888899888888777776521
Q ss_pred hhhhhHHHhhhhhhhhhhccCCCCcCCCCc----hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001357 494 DASASMLQFKDMQLFHRFENDGNHVELPWN----KVTVLFNLARLLEQIHDTVAASVLYRLILF 553 (1093)
Q Consensus 494 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 553 (1093)
.+--+ ++.+ -+.+.++.+..+...|+.++|+..|+.+.+
T Consensus 86 ---------------NRRGE------L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 86 ---------------NRRGE------LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp ---------------HHH--------TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---------------hhccc------cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 11111 1111 345667788889999999999999887654
No 348
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.89 E-value=35 Score=41.08 Aligned_cols=176 Identities=14% Similarity=0.067 Sum_probs=96.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q 001357 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK 354 (1093)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~ 354 (1093)
..+++....|.-|+.+.+.-- .............|..++..|++++|...|-+.+..+ .|..+ ..-+..
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l--e~s~V------i~kfLd 409 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL--EPSEV------IKKFLD 409 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC--ChHHH------HHHhcC
Confidence 345566666777776665322 1112334667778999999999999999999888532 12221 122233
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001357 355 LGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELLISSDTGAALDAFKT 434 (1093)
Q Consensus 355 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~~~~~~~~A~~~~~~ 434 (1093)
.....+-..+++.+.+..-.+..--..|..||.++++.++-.++..+.- ...-..+.-..+-.++..+-.+.|.-...+
T Consensus 410 aq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 4445555666666666544455556677789999998877655544321 000000111111112233333333322211
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 435 ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAHQSFKDA 474 (1093)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 474 (1093)
. .. .. ..+-.++...|+|++|+.++..+
T Consensus 489 ~-------~~--he---~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 F-------KK--HE---WVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred h-------cc--CH---HHHHHHHHHhcCHHHHHHHHhcC
Confidence 1 11 11 22345567789999999998653
No 349
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.66 E-value=19 Score=38.07 Aligned_cols=60 Identities=17% Similarity=0.039 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 001357 528 LFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVN 589 (1093)
Q Consensus 528 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 589 (1093)
-+.+.....+..+..+-++....+++++|..+.+|..|+.-- ..-..+|..+++++++..
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAG 246 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHH
Confidence 334444455555566666666666666666666666555422 123445556666655543
No 350
>PF12854 PPR_1: PPR repeat
Probab=91.17 E-value=0.43 Score=32.16 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=27.1
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 001357 37 QAPLDLWLIIAREYFKQGKVEQFRQILEEG 66 (1093)
Q Consensus 37 ~~~~~~~~~la~~y~~~g~~~~a~~~l~~a 66 (1093)
.++.-+|..+...|++.|++++|.++|+++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 356779999999999999999999999875
No 351
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.96 E-value=1.4 Score=38.19 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=46.9
Q ss_pred HhcCCchhHHHHHHHHHHHhcCCCCCC----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHH
Q 001357 686 AEKGQFDVSKDLFTQVQEAASGSVFVQ----MPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQ 751 (1093)
Q Consensus 686 ~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 751 (1093)
.+.|++..|++.+.+..+....+.... ...++.++|.++...|++++|+..++.++.......|..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~ 78 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRR 78 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHH
Confidence 367888888888888877664432211 245667788888888888888888888888776666633
No 352
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.81 E-value=0.55 Score=48.58 Aligned_cols=88 Identities=10% Similarity=0.158 Sum_probs=63.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 152 KIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLG-IGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 152 ~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
.+.....|+++..|...+....+.|-|.+--.+|.+++..+|.+ .++|.. .+.-+.-.++++.++..|.+++.++|++
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-VDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 34444567777777777777777777888888888888888887 555544 5556667788888888888888888888
Q ss_pred HHHHHHHHHH
Q 001357 231 VEALVALAVM 240 (1093)
Q Consensus 231 ~~a~~~la~~ 240 (1093)
+..|...-.+
T Consensus 176 p~iw~eyfr~ 185 (435)
T COG5191 176 PRIWIEYFRM 185 (435)
T ss_pred chHHHHHHHH
Confidence 8777655443
No 353
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.46 E-value=0.51 Score=46.80 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=33.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 139 LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 139 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
...|+.+.|.++|.+++...|.+...|+.+|....+.|+++.|...|+++++++|.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344555555666666666556555566666655555666666666666666665555
No 354
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.40 E-value=0.74 Score=51.19 Aligned_cols=94 Identities=19% Similarity=0.111 Sum_probs=55.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR---GRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~---g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
|.-.+..+.+..|+..|.+++...|.....+...|.++.+. |+.-.|+.-...+++++|.. ..+++.|+.++..++
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el~ 459 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNELT 459 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHHh
Confidence 33333444455666666666666666666666666666554 34445555555666666665 455666666666666
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 001357 212 QLGKARQAFQRALQLDPE 229 (1093)
Q Consensus 212 ~~~~A~~~~~~al~~~p~ 229 (1093)
++.+|+.....+....|.
T Consensus 460 r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 460 RYLEALSCHWALQMSFPT 477 (758)
T ss_pred hHHHhhhhHHHHhhcCch
Confidence 666666666555555553
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.18 E-value=1.3 Score=36.12 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHhhccHHHHHHHHHH
Q 001357 719 NLAHVYFAQGNFALAMKMYQNCLRKFYYNTD-AQILLYLARTHYEAEQWQDCKKSLLR 775 (1093)
Q Consensus 719 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~la~~~~~~g~~~~A~~~~~~ 775 (1093)
.-|.-++.+.+..+|+..+++++++.+.+++ ..++-+|..+|...|++.+++.+...
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456778899999999999998776666 67778899999999999998777544
No 356
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.91 E-value=0.49 Score=46.90 Aligned_cols=61 Identities=28% Similarity=0.451 Sum_probs=48.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 001357 170 CVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENV 231 (1093)
Q Consensus 170 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 231 (1093)
......++.+.|.++|.+++.+-|.. ...|+.+|....+.|+++.|...|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w-~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEW-AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchh-hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34556778888888888888888887 66688888888888888888888888888888653
No 357
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=23 Score=38.98 Aligned_cols=163 Identities=9% Similarity=0.021 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Q 001357 111 ILATQYYNKASRIDMHEPSTWVGKGQLLLAK------------GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR- 177 (1093)
Q Consensus 111 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~------------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~- 177 (1093)
..++.+=.+.+..+|....+|..+-.++... .-++.-+.+...++..+|++..+|..+..++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 3677777788888898887776654333222 235666777888899999999999999999987764
Q ss_pred -hHHHHHHHHHHHHhCCCChHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh------hh-
Q 001357 178 -YSDSLEFYKRALQVHPSCPGAIRLGIGLCRY---KLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA------NE- 246 (1093)
Q Consensus 178 -~~~Al~~~~~al~~~p~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~------~~- 246 (1093)
+..=+.+++++++.+|.+--...+..-.+-. ......+=+.+..+++..++.|..+|.....+.... |+
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~ 205 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNF 205 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCcc
Confidence 5788999999999999883333332222222 222355566778888888999999998877766532 21
Q ss_pred --HHhHHHHHHHHHHHHHhCCCcHHHHHH
Q 001357 247 --AAGIRKGMEKMQRAFEIYPYCAMALNY 273 (1093)
Q Consensus 247 --~~~~~~Al~~~~~al~~~p~~~~~~~~ 273 (1093)
..-...-+.....++-.+|.+..+|.+
T Consensus 206 ~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 206 MPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred CCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 122455666777777788888877765
No 358
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.83 E-value=12 Score=42.92 Aligned_cols=102 Identities=17% Similarity=0.059 Sum_probs=42.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCcHHHHHHH------HHHH
Q 001357 169 ACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQR-ALQLDPENVEALVAL------AVMD 241 (1093)
Q Consensus 169 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~a~~~l------a~~~ 241 (1093)
...+...+....+.-.+..++..+|.+ ...+..++......|..-.+...+.. +....|.+......+ +...
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPEN-CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCccc-chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 333334444444444444455555444 23334444444444444333333333 444444444433333 2222
Q ss_pred HHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHH
Q 001357 242 LQANEAAGIRKGMEKMQRAFEIYPYCAMALNYL 274 (1093)
Q Consensus 242 ~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~l 274 (1093)
...+. ..++...+.++....|.++.+...+
T Consensus 153 ~~l~~---~~~~~~~l~~~~d~~p~~~~~~~~~ 182 (620)
T COG3914 153 KLLGR---TAEAELALERAVDLLPKYPRVLGAL 182 (620)
T ss_pred HHhcc---HHHHHHHHHHHHHhhhhhhhhHhHH
Confidence 22333 3444444444445555544444333
No 359
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=5.5 Score=45.59 Aligned_cols=128 Identities=23% Similarity=0.142 Sum_probs=99.3
Q ss_pred HHHHHHHHHhcCCCChhhHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HH
Q 001357 113 ATQYYNKASRIDMHEPSTWVGK--GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKR-AL 189 (1093)
Q Consensus 113 A~~~~~~a~~~~p~~~~~~~~~--a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~-al 189 (1093)
++..+...+.++|.++..+... ...+...+....+.-.+...+..+|++..+...++......|....++..+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5556666667888888775544 66777778888999999999999999999999999998888877777666655 77
Q ss_pred HhCCCChHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 001357 190 QVHPSCPGA-----IRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVM 240 (1093)
Q Consensus 190 ~~~p~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 240 (1093)
...|.+... .++.++..+..+|+..++.....++..+.|.++.+...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 777877221 123358888889999999999999999999986665555444
No 360
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.42 E-value=7.6 Score=42.41 Aligned_cols=86 Identities=14% Similarity=0.218 Sum_probs=57.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhC--------CCC---------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 001357 168 QACVEFNRGRYSDSLEFYKRALQVH--------PSC---------PGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPEN 230 (1093)
Q Consensus 168 la~~~~~~g~~~~Al~~~~~al~~~--------p~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 230 (1093)
-|..++++++|..|..-|..+|.+. |.. ...+.-.+..||+++++.+.|+....+.+.++|.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 3445556666666655555555542 111 12334567888889999999998888888888888
Q ss_pred HHHHHHHHHHHHHhhhHHhHHHHHHH
Q 001357 231 VEALVALAVMDLQANEAAGIRKGMEK 256 (1093)
Q Consensus 231 ~~a~~~la~~~~~~~~~~~~~~Al~~ 256 (1093)
..-++..|.+...... |.+|-..
T Consensus 262 frnHLrqAavfR~LeR---y~eAarS 284 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLER---YSEAARS 284 (569)
T ss_pred hhHHHHHHHHHHHHHH---HHHHHHH
Confidence 8888777877777666 5555543
No 361
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.11 E-value=45 Score=37.78 Aligned_cols=99 Identities=14% Similarity=0.001 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 001357 158 DRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVAL 237 (1093)
Q Consensus 158 ~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 237 (1093)
.|-+-.++..+..++.....+.--..++.+++....+- ..++.++.||... ..+.-...|++.++.+-+++..-..|
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~k--mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESK--MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 34455556666666655556666666777777765543 4567777777777 45666677777777777777766677
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHh
Q 001357 238 AVMDLQANEAAGIRKGMEKMQRAFEI 263 (1093)
Q Consensus 238 a~~~~~~~~~~~~~~Al~~~~~al~~ 263 (1093)
+..|.. ++ ...+..+|.+++..
T Consensus 139 a~~yEk-ik---~sk~a~~f~Ka~yr 160 (711)
T COG1747 139 ADKYEK-IK---KSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHH-hc---hhhHHHHHHHHHHH
Confidence 766665 34 56667777766543
No 362
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.09 E-value=0.76 Score=32.47 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Q 001357 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKF 744 (1093)
Q Consensus 715 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 744 (1093)
.++.++|.+|..+|++.+|..++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467788888888888888888888887753
No 363
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=88.99 E-value=0.8 Score=47.47 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=73.1
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCC
Q 001357 116 YYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLG-QACVEFNRGRYSDSLEFYKRALQVHPS 194 (1093)
Q Consensus 116 ~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~-la~~~~~~g~~~~Al~~~~~al~~~p~ 194 (1093)
.|.++...-|+++..|...+......|-|.+--..|.++++.+|.|+..|.. -+.-++..++++.+..+|.++++.+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3444555668999999999988889999999999999999999999999977 566678889999999999999999999
Q ss_pred ChHHHHH
Q 001357 195 CPGAIRL 201 (1093)
Q Consensus 195 ~~~~~~~ 201 (1093)
+ +.+|+
T Consensus 175 ~-p~iw~ 180 (435)
T COG5191 175 S-PRIWI 180 (435)
T ss_pred C-chHHH
Confidence 9 55554
No 364
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.63 E-value=6.3 Score=46.07 Aligned_cols=15 Identities=47% Similarity=0.736 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 001357 875 EQQNRQRQEAARQAA 889 (1093)
Q Consensus 875 e~~~~~~~~~~~~~~ 889 (1093)
++++|.++|..|+.+
T Consensus 356 ekkererqEqErk~q 370 (1118)
T KOG1029|consen 356 EKKERERQEQERKAQ 370 (1118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555543
No 365
>PF13041 PPR_2: PPR repeat family
Probab=88.22 E-value=1.2 Score=33.23 Aligned_cols=45 Identities=20% Similarity=0.041 Sum_probs=34.8
Q ss_pred hhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhH
Q 001357 593 PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNW 637 (1093)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~ 637 (1093)
..+|..+...+.+.|++++|.++|+++.+..-.++.+++..+.+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 456777788888888888888888888887777777777766555
No 366
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.15 E-value=45 Score=36.63 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc---cCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hcCCCCCchhh
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAV---TNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVK-EINKPHEFIFP 344 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~ 344 (1093)
..|+.+...|-..|+......++...+.. .......+...+.+-+.|...+.|+.|-.+..+..- ....+...+..
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY 249 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARY 249 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHH
Confidence 34555555566666655555554444432 122334455666777888888888888777766541 00011233445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 001357 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDN 375 (1093)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 375 (1093)
.+.+|.+..-.++|..|.++|-.++...|.+
T Consensus 250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 6678888888888888999888888888863
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.93 E-value=5.5 Score=32.58 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=42.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 001357 200 RLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQR 259 (1093)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~ 259 (1093)
.+.-|.-++...+..+|+..|.++++..++....+..||.+.....+.|.+.+.+.+...
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677788888888888888888888777777777665555555557776665443
No 368
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=87.46 E-value=5.1 Score=50.39 Aligned_cols=143 Identities=17% Similarity=0.137 Sum_probs=96.8
Q ss_pred hCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----ccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---
Q 001357 263 IYPYCAMALNYLANHFFFTGQHFLVEQLTETALA-----VTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKE--- 334 (1093)
Q Consensus 263 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 334 (1093)
+.|.....+..|+.++...|++++|+.+..++.- .....+.....+.+++...+..++...|+..+.++...
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 4566666666666666666666666666655542 22334566677777777777777777777777776552
Q ss_pred --cCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 335 --INKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIY-----P---DNCETLKALGHIYVQLGQIEKAQELLRKAAK 404 (1093)
Q Consensus 335 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p---~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 404 (1093)
.+..|.......+++.++...+.++.|+.+++.+++.. | .....+..++.++...+++..|+........
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 23456666667777777777888888888888877652 2 2456677778888888888887777666554
Q ss_pred h
Q 001357 405 I 405 (1093)
Q Consensus 405 ~ 405 (1093)
+
T Consensus 1128 i 1128 (1236)
T KOG1839|consen 1128 I 1128 (1236)
T ss_pred H
Confidence 3
No 369
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=87.37 E-value=6.5 Score=49.51 Aligned_cols=171 Identities=20% Similarity=0.177 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-----CCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Q 001357 306 HSYYNLARSYHSKGDYEKAGLYYMASVKEIN-----KPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--------Y 372 (1093)
Q Consensus 306 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~ 372 (1093)
.-....+......|.+.+|.+ ..+++..+. ..+....++..++.++...|++++|+....++.-+ .
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 345556777777888888877 433333211 45777888999999999999999999988776543 3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHhcC
Q 001357 373 PDNCETLKALGHIYVQLGQIEKAQELLRKAAKI--------DPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKKAG 443 (1093)
Q Consensus 373 p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--------~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~~~ 443 (1093)
|+....+..++...+..++...|+..+.++..+ .|.......++..++ ..+.++.|+.+++.|........
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~ 1091 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVL 1091 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 455678888888888889999999999888764 466677778888888 77999999999999998765543
Q ss_pred CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 001357 444 EE---VPIEVLNNIGVIHFEKGEFESAHQSFKDALGD 477 (1093)
Q Consensus 444 ~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 477 (1093)
.+ .....+..++..+...+++..|....+.....
T Consensus 1092 g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1092 GPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred CccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 32 22455666777777778877777777666553
No 370
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=87.19 E-value=2.4 Score=47.34 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAK---GEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLE 183 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~ 183 (1093)
...+..|+..|.+++...|.....+..++.++++. |+.-.|+..+..++.++|....+++.++.++...+++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 44566899999999999999999999999988877 566778888889999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 001357 184 FYKRALQVHPSC 195 (1093)
Q Consensus 184 ~~~~al~~~p~~ 195 (1093)
....+....|.+
T Consensus 467 ~~~alq~~~Ptd 478 (758)
T KOG1310|consen 467 CHWALQMSFPTD 478 (758)
T ss_pred hHHHHhhcCchh
Confidence 998888888866
No 371
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.98 E-value=7.3 Score=37.65 Aligned_cols=28 Identities=36% Similarity=0.385 Sum_probs=19.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 001357 905 LLEKRKLEDEQKRLRQQEEHFQRVKEQWRS 934 (1093)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 934 (1093)
.++++|+++| ..+.+++.-..-.-.|+.
T Consensus 195 aeek~Kr~~E--~qKnfEEsRd~Rv~sWrn 222 (250)
T KOG1150|consen 195 AEEKRKRERE--WQKNFEESRDGRVGSWRN 222 (250)
T ss_pred HHHHHHHHHH--HHHHHHHhcccccchHHH
Confidence 4455565555 678888877777778874
No 372
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.70 E-value=19 Score=41.47 Aligned_cols=161 Identities=16% Similarity=0.075 Sum_probs=94.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 133 GKGQLLLAKGEVEQASSAFKIVLEADRDN-VPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 133 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
..-...+..|+++.+....... ...|.- ..-....+..+.+.|.++.|+.+.. + +..++.++ .++|
T Consensus 266 ~~fk~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D-~~~rFeLA---l~lg 332 (443)
T PF04053_consen 266 LEFKTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------D-PDHRFELA---LQLG 332 (443)
T ss_dssp HHHHHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHHHHHHH---HHCT
T ss_pred HHHHHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------C-hHHHhHHH---HhcC
Confidence 3445566789999988887521 222322 3345666777778888888877642 2 34555444 5788
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCChHHHHHHH
Q 001357 212 QLGKARQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLT 291 (1093)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 291 (1093)
+++.|..... ..+++..|..||...+.+|+ ++-|..+|+++-. +..|..+|...|+.+...++.
T Consensus 333 ~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~---~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 333 NLDIALEIAK-----ELDDPEKWKQLGDEALRQGN---IELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp -HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTB---HHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHH
T ss_pred CHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCC---HHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHH
Confidence 8888887643 33477899999999999999 8888888876532 345566777788877766666
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001357 292 ETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMA 330 (1093)
Q Consensus 292 ~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 330 (1093)
..+.... -+...-.+++..|++++.+.++..
T Consensus 397 ~~a~~~~--------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 397 KIAEERG--------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHTT---------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHcc--------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6655432 122233344555666666555544
No 373
>PF13041 PPR_2: PPR repeat family
Probab=86.44 E-value=2.9 Score=31.08 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 001357 715 DVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 760 (1093)
Q Consensus 715 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~ 760 (1093)
.+|..+-+.|.+.|++++|.++|+++.+. .-.++..++..+..++
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~-g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR-GIKPDSYTYNILINGL 48 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Confidence 44555555566666666666666665543 2344444444444443
No 374
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.33 E-value=39 Score=35.56 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=62.7
Q ss_pred chhHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHhhcc
Q 001357 691 FDVSKDLFTQVQEAASGSVFV-QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTD----AQILLYLARTHYEAEQ 765 (1093)
Q Consensus 691 ~~~A~~~~~~~~~~~p~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~l~~la~~~~~~g~ 765 (1093)
....+.++.++.+........ -...+...+|.-|+..|+++.|+.+|+.+...|....- ..++..+..|+...|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 344566666666655321111 13455668899999999999999999999887754443 6777889999999999
Q ss_pred HHHHHHHHHHHH
Q 001357 766 WQDCKKSLLRAI 777 (1093)
Q Consensus 766 ~~~A~~~~~~al 777 (1093)
.+..+.+.-+++
T Consensus 234 ~~~~l~~~leLl 245 (247)
T PF11817_consen 234 VEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHh
Confidence 999887766554
No 375
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.29 E-value=5 Score=39.75 Aligned_cols=80 Identities=13% Similarity=0.078 Sum_probs=62.1
Q ss_pred HhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHhh
Q 001357 686 AEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYN--TDAQILLYLARTHYEA 763 (1093)
Q Consensus 686 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~l~~la~~~~~~ 763 (1093)
...-.-..|...|-++-.. +..+++...+.||..|.+ .+..+|+.+|-++++..... .++.++..|+.++++.
T Consensus 117 Wsr~~d~~A~~~fL~~E~~----~~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~ 191 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGT----PELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL 191 (203)
T ss_pred hhccCcHHHHHHHHHHcCC----CCCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 3344456777776665332 234789999999998885 78999999999999987544 3599999999999999
Q ss_pred ccHHHHH
Q 001357 764 EQWQDCK 770 (1093)
Q Consensus 764 g~~~~A~ 770 (1093)
|+++.|-
T Consensus 192 ~~~e~AY 198 (203)
T PF11207_consen 192 KNYEQAY 198 (203)
T ss_pred cchhhhh
Confidence 9998875
No 376
>PRK12798 chemotaxis protein; Reviewed
Probab=86.23 E-value=61 Score=36.15 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 342 IFPYYGLGQVQLKLGDFRSALTNFEKVLEI 371 (1093)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 371 (1093)
...|+.++..-.-.|+.+-|.-.-.+++.+
T Consensus 257 ~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 257 RELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 345555566666666666666666655554
No 377
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.12 E-value=8.3 Score=44.24 Aligned_cols=123 Identities=16% Similarity=0.109 Sum_probs=55.8
Q ss_pred HhcCChHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhcccchHHHHH
Q 001357 536 EQIHDTVAASVLYRLILFKYQDY-VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELKNDDWVKAKE 614 (1093)
Q Consensus 536 ~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 614 (1093)
...++++.+...... -...|.. ..-...++..+.+.|-++.|+.+. .++...+.|+ ++.|+.+.|..
T Consensus 272 v~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHH
Confidence 345677776555531 1111221 233455556666666666665443 2344444433 55666666655
Q ss_pred HHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhH
Q 001357 615 TFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVS 694 (1093)
Q Consensus 615 ~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A 694 (1093)
.... ..+...|-.||.. .+.. |+++-|..+|+++- -+..|..+|.-.|+.+.=
T Consensus 340 ~a~~------~~~~~~W~~Lg~~-AL~~------------g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 340 IAKE------LDDPEKWKQLGDE-ALRQ------------GNIELAEECYQKAK--------DFSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HCCC------CSTHHHHHHHHHH-HHHT------------TBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHH
T ss_pred HHHh------cCcHHHHHHHHHH-HHHc------------CCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHH
Confidence 5431 1244455566666 5555 66666666665542 133445555555554333
Q ss_pred HHH
Q 001357 695 KDL 697 (1093)
Q Consensus 695 ~~~ 697 (1093)
..+
T Consensus 393 ~kl 395 (443)
T PF04053_consen 393 SKL 395 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 378
>PRK11619 lytic murein transglycosylase; Provisional
Probab=85.85 E-value=93 Score=37.89 Aligned_cols=123 Identities=7% Similarity=-0.018 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHH
Q 001357 41 DLWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKA 120 (1093)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a 120 (1093)
...+.-|...++.|++..+..+...+.+.... ..+-+..+..+... .....+...
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~d~pL~--------------~yl~y~~L~~~l~~-----------~~~~ev~~F 88 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLKDYPLY--------------PYLEYRQLTQDLMN-----------QPAVQVTNF 88 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCCcH--------------hHHHHHHHHhcccc-----------CCHHHHHHH
Confidence 46788899999999999998888876432111 11111111111100 012234445
Q ss_pred HhcCCCChhhHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001357 121 SRIDMHEPSTWVGKGQLL---LAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1093)
Q Consensus 121 ~~~~p~~~~~~~~~a~~~---~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1093)
+..+|+.|.....+.... ...+++..-+.++ ...|.+.......+......|+-.+|......+-...
T Consensus 89 l~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 89 IRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 556677666555544433 2345555544422 2347777776777777888888887877766665443
No 379
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.84 E-value=6.4 Score=46.01 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 001357 858 KHLLDAAKIHREAAER---EEQQNRQRQEAARQAALAEEA 894 (1093)
Q Consensus 858 ~~l~~~~~~~~~~~~~---~e~~~~~~~~~~~~~~~~~~~ 894 (1093)
..-|++-.+.++.+++ ++.+.+.|-|++|+.|+.+|+
T Consensus 326 qaELerRRq~leeqqqreree~eqkEreE~ekkererqEq 365 (1118)
T KOG1029|consen 326 QAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQ 365 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333 223344444555555543333
No 380
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=85.77 E-value=5.4 Score=34.57 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=30.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 001357 138 LLAKGEVEQASSAFKIVLEADR----DN-----VPALLGQACVEFNRGRYSDSLEFYKRALQVH 192 (1093)
Q Consensus 138 ~~~~g~~~~A~~~~~~al~~~p----~~-----~~a~~~la~~~~~~g~~~~Al~~~~~al~~~ 192 (1093)
.+..|+|..|++.+.+.+.... .. ..+++.+|.++...|++++|+..+++++.+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3456666666655555543321 11 2345556666666666666666666665543
No 381
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.64 E-value=1.7 Score=30.68 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Q 001357 750 AQILLYLARTHYEAEQWQDCKKSLLRAIHL 779 (1093)
Q Consensus 750 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~ 779 (1093)
..++..||.+|...|++.+|..++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999875
No 382
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.46 E-value=16 Score=38.63 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 001357 130 TWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQ 190 (1093)
Q Consensus 130 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~ 190 (1093)
++..++..+...|+++.+...++..+..+|-+...|..+...|+..|+...|+..|.++-.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4555566666666666666666666666666666666666666666666666666666554
No 383
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=85.36 E-value=14 Score=40.55 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=69.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--------C-----CH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 134 KGQLLLAKGEVEQASSAFKIVLEADR--------D-----NV-----PALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 134 ~a~~~~~~g~~~~A~~~~~~al~~~p--------~-----~~-----~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
-|..++++++|..|..-|..++.+.. . ++ ..--.+..||.++++.+-|+...-+.+.++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 35667778888888877777776521 1 11 223557889999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 196 PGAIRLGIGLCRYKLGQLGKARQAFQRA 223 (1093)
Q Consensus 196 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 223 (1093)
..-++..|.|+..+.+|.+|...+.-+
T Consensus 262 -frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 262 -FRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999999988765543
No 384
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=85.25 E-value=4.7 Score=41.92 Aligned_cols=64 Identities=16% Similarity=0.130 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001357 108 EHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (1093)
Q Consensus 108 ~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 171 (1093)
+.+..|....+..+.++|.++.-+.-+|.+|.+.|.+.-|+..+...+...|+.+.+-...+..
T Consensus 195 ~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 195 LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3344777777777777777777777777777777777777777777777777777665555443
No 385
>PF12854 PPR_1: PPR repeat
Probab=84.95 E-value=1.2 Score=30.06 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHH
Q 001357 674 NLYAANGAGVVLAEKGQFDVSKDLFTQV 701 (1093)
Q Consensus 674 ~~~a~~~la~~~~~~g~~~~A~~~~~~~ 701 (1093)
|...++.+...|++.|++++|..+|+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 6778888888888888888888888765
No 386
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.16 E-value=36 Score=37.62 Aligned_cols=136 Identities=17% Similarity=0.107 Sum_probs=98.5
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cC
Q 001357 103 QREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGE--VEQASSAFKIVLEADRDNVPALLGQACVEFN----RG 176 (1093)
Q Consensus 103 ~~~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g 176 (1093)
...+...++.-+.+...+++.+|.+..+|+.+..++.+.+. +..=+.++.++++.+|.|..+|...=.+... ..
T Consensus 84 ~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~ 163 (421)
T KOG0529|consen 84 PLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRN 163 (421)
T ss_pred HHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccc
Confidence 44566678888999999999999999999999999998874 6889999999999999998887544333322 22
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 177 RYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYK------LGQ------LGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~------~g~------~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
...+=+.+..+++..++.+-. +|.....++-. .|+ ...-+.....++-.+|++..+|+..-.
T Consensus 164 ~~~~El~ftt~~I~~nfSNYs-aWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rW 237 (421)
T KOG0529|consen 164 LEKEELEFTTKLINDNFSNYS-AWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRW 237 (421)
T ss_pred cchhHHHHHHHHHhccchhhh-HHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHH
Confidence 366778899999998888833 34444333331 231 223344555666679999999887433
No 387
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.15 E-value=1.4 Score=27.53 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHH
Q 001357 716 VWINLAHVYFAQGNFALAMKMY 737 (1093)
Q Consensus 716 ~~~~lg~~~~~~g~~~~A~~~~ 737 (1093)
+.+++|.++..+|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555556655555554
No 388
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.72 E-value=3.7 Score=28.08 Aligned_cols=19 Identities=26% Similarity=0.718 Sum_probs=7.3
Q ss_pred HHHHHHHHHcCChHHHHHH
Q 001357 166 LGQACVEFNRGRYSDSLEF 184 (1093)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~ 184 (1093)
+++|..+...|++++|+.+
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3334444444444444444
No 389
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.41 E-value=9.2 Score=37.93 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 001357 393 EKAQELLRKAAKID-PRDAQAFIDLGELLISSDTGAALDAFKTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFESAH 468 (1093)
Q Consensus 393 ~~A~~~l~~~l~~~-p~~~~~~~~la~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 468 (1093)
+.|...|-++-... -+++...+.||..|...+..+++..+.+++.+.+. +...+++++..|+.++...|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~-~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNP-DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34444444432211 23456666666666666666666666666665443 22455777777777777777777664
No 390
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.06 E-value=3.8 Score=28.00 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCC
Q 001357 129 STWVGKGQLLLAKGEVEQASSAFK--IVLEADRDN 161 (1093)
Q Consensus 129 ~~~~~~a~~~~~~g~~~~A~~~~~--~al~~~p~~ 161 (1093)
+.|+.+|..+...|++++|+..|+ -+...+|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 568899999999999999999954 777777654
No 391
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.99 E-value=5.3 Score=44.60 Aligned_cols=109 Identities=12% Similarity=0.159 Sum_probs=66.0
Q ss_pred hhCCC--CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcC-CCCCCchhHHHHH--------HHHHHHhcCHHHHHHHH
Q 001357 669 VQHTS--NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASG-SVFVQMPDVWINL--------AHVYFAQGNFALAMKMY 737 (1093)
Q Consensus 669 ~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~l--------g~~~~~~g~~~~A~~~~ 737 (1093)
+.+|+ ++....+.-..++...++.+-+...........- ..+ ....++..| ..+++-.|+|..|++.+
T Consensus 67 ~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~-g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l 145 (404)
T PF10255_consen 67 ENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEY-GSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVL 145 (404)
T ss_pred hhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhccc-ccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHh
Confidence 33455 4444555555556666666655555442111100 001 223344443 36688899999999997
Q ss_pred HHHHH----hhcC-C-CCHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 001357 738 QNCLR----KFYY-N-TDAQILLYLARTHYEAEQWQDCKKSLLRAIH 778 (1093)
Q Consensus 738 ~~al~----~~~~-~-~~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 778 (1093)
+..-- .+.. + -...++|++|.+|...++|.+|+++|..++-
T Consensus 146 ~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 146 ENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred hccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66411 1111 1 2378899999999999999999999977654
No 392
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.52 E-value=8.8 Score=40.55 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAA 403 (1093)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l 403 (1093)
.++..++..+...|+++.++..++..+..+|.+-..|..+..+|...|+...|+..|+++-
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555543
No 393
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.52 E-value=0.98 Score=53.19 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhCCCC
Q 001357 824 LENAVRVFSHLSAASNL 840 (1093)
Q Consensus 824 l~~a~~~~~~l~~~~~~ 840 (1093)
..+||+.|.++...+..
T Consensus 1256 ~~~aIh~FD~ft~~~~G 1272 (1516)
T KOG1832|consen 1256 IPEAIHRFDQFTDYGGG 1272 (1516)
T ss_pred cHHHHhhhhhheecccc
Confidence 35889999988765443
No 394
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.45 E-value=2.7 Score=29.09 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 715 DVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 715 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
+++..||.+-+..++|.+|+.-|++|+..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 57888999999999999999999999876
No 395
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.19 E-value=13 Score=41.55 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH-------HHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 163 PALLGQACVEFNRGRYSDSLEFYKRA-------LQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1093)
Q Consensus 163 ~a~~~la~~~~~~g~~~~Al~~~~~a-------l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (1093)
.++.++.+++.-.|+|..|++.++.+ ...-|.+...+++.+|.+|+.+++|.+|+..|..++-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888889999998887643 2223444466788999999999999999999998764
No 396
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.11 E-value=2.4 Score=26.45 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Q 001357 41 DLWLIIAREYFKQGKVEQFRQILEE 65 (1093)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~ 65 (1093)
.+.+.+|.+|+.+|++++|+.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678899999999999999998863
No 397
>PLN03237 DNA topoisomerase 2; Provisional
Probab=79.85 E-value=6.2 Score=51.08 Aligned_cols=31 Identities=29% Similarity=0.376 Sum_probs=17.3
Q ss_pred CchhhhhhhhHHHhcCCCC----CCCCCCCCCCch
Q 001357 1012 DDDVEENANDRLAAAGLED----SDVDDEMAPSIT 1042 (1093)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 1042 (1093)
+++.-.+-+++|++-.|.- +-.-++..|+++
T Consensus 1259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1293 (1465)
T PLN03237 1259 EEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVP 1293 (1465)
T ss_pred ccccHHHHHHHHHhccccCCCCcccccccccccch
Confidence 3344456778888888733 222234555555
No 398
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.70 E-value=88 Score=33.16 Aligned_cols=136 Identities=17% Similarity=0.135 Sum_probs=58.2
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALL--GQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGI 203 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~--~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 203 (1093)
.++..+..+|..++..|++.+|...|-.. +++.+.. .+. +.......|..........
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll---------------~~~~~~~~~~e~dlfi~Ra 147 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLL---------------EEWSTKGYPSEADLFIARA 147 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHH---------------HHHHHHTSS--HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHH---------------HHHHHhcCCcchhHHHHHH
Confidence 45666666666666666666665555322 1111110 011 1111223344422333334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh----CCC----------cHHHHH--HHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCc
Q 001357 204 GLCRYKLGQLGKARQAFQRALQL----DPE----------NVEALV--ALAVMDLQANEAAGIRKGMEKMQRAFEIYPYC 267 (1093)
Q Consensus 204 a~~~~~~g~~~~A~~~~~~al~~----~p~----------~~~a~~--~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~ 267 (1093)
...|..+++...|...+...++. +|. ....+. .+-...+..++...+..-...|...++.+|..
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~ 227 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSF 227 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHH
Confidence 45566778888888877666654 332 222211 11222223333333444444555555555666
Q ss_pred HHHHHHHHHHHHHc
Q 001357 268 AMALNYLANHFFFT 281 (1093)
Q Consensus 268 ~~~~~~la~~~~~~ 281 (1093)
...+..+|..|+..
T Consensus 228 ~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 228 KEYLDKIGQLYFGI 241 (260)
T ss_dssp HHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCC
Confidence 66666666666653
No 399
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.12 E-value=42 Score=37.16 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=18.5
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHH
Q 001357 755 YLARTHYEAEQWQDCKKSLLRAIH 778 (1093)
Q Consensus 755 ~la~~~~~~g~~~~A~~~~~~al~ 778 (1093)
.-|...|++|+.++|.++|+.+..
T Consensus 272 LQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 272 LQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 447788888888888888876654
No 400
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=78.83 E-value=1.1e+02 Score=33.81 Aligned_cols=133 Identities=16% Similarity=0.185 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHhhCCC-C--------HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhc-CCCCCCchhHHH-HHHHH
Q 001357 655 THLEKAKELYTRVIVQHTS-N--------LYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS-GSVFVQMPDVWI-NLAHV 723 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~-~--------~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~-~lg~~ 723 (1093)
+.+.+|..+-...+..... | .-.|+.+..++...|+...-...+...+.... .... ....++. .|-..
T Consensus 140 K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~-e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 140 KEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDE-EGQAVLINLLLRN 218 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcc-hhHHHHHHHHHHH
Confidence 7788888877666543211 2 22344445556667776666666666655431 1111 2233444 44577
Q ss_pred HHHhcCHHHHHHHHHHHHHhhcCC--CC--HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHH
Q 001357 724 YFAQGNFALAMKMYQNCLRKFYYN--TD--AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDA 790 (1093)
Q Consensus 724 ~~~~g~~~~A~~~~~~al~~~~~~--~~--~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 790 (1093)
|+..+.|+.|-....+.. ||.. ++ +..++++|++..-.++|..|.++|..++...|++..+-|..
T Consensus 219 yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q 287 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQ 287 (493)
T ss_pred HhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHH
Confidence 888899999998854433 2221 12 66788999999999999999999999999999876555443
No 401
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.85 E-value=1.3e+02 Score=34.24 Aligned_cols=226 Identities=11% Similarity=0.026 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhh
Q 001357 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 603 (1093)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 603 (1093)
+-..+..+..++.......-...++.+++... .+--+++.++.+|... ..+.-..++++..+.+-++...-..++..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 33444555555555555555566777777643 4457788888888877 556677788888888888887777788777
Q ss_pred hcccchHHHHHHHHHhhhcC-CCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCC--CHHHHHH
Q 001357 604 LKNDDWVKAKETFRAASDAT-DGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTS--NLYAANG 680 (1093)
Q Consensus 604 ~~~g~~~~A~~~~~~~l~~~-~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~a~~~ 680 (1093)
.+ ++...+...|.+++... |..... .+-.+ |.+..+.. ..+.+.-+....++-..... -..++..
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~---~i~ev-WeKL~~~i-------~dD~D~fl~l~~kiqt~lg~~~~~Vl~qd 210 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNA---AIKEV-WEKLPELI-------GDDKDFFLRLQKKIQTKLGEGRGSVLMQD 210 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhh---hHHHH-HHHHHHhc-------cccHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 66 78888888888877632 211110 01111 22221100 02222223332222222111 1112222
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 001357 681 AGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTH 760 (1093)
Q Consensus 681 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~ 760 (1093)
+-.-|....++++|+.++..+++.+. .+..+.-++..-+.. ++....+.+-|.-...+-
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d~-----k~~~ar~~~i~~lRd----------------~y~~~~~~e~yl~~s~i~ 269 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHDE-----KDVWARKEIIENLRD----------------KYRGHSQLEEYLKISNIS 269 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhcc-----hhhhHHHHHHHHHHH----------------HhccchhHHHHHHhcchh
Confidence 22334455677777777777776653 233333333222211 111222222222333333
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCc
Q 001357 761 YEAEQWQDCKKSLLRAIHLAPSNY 784 (1093)
Q Consensus 761 ~~~g~~~~A~~~~~~al~~~P~~~ 784 (1093)
..-.++.+|..-|++.++.+.+|-
T Consensus 270 ~~~rnf~~~l~dFek~m~f~eGnF 293 (711)
T COG1747 270 QSGRNFFEALNDFEKLMHFDEGNF 293 (711)
T ss_pred hccccHHHHHHHHHHHheeccCce
Confidence 334567788888999999888774
No 402
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=77.72 E-value=21 Score=37.35 Aligned_cols=76 Identities=28% Similarity=0.293 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001357 345 YYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~ 420 (1093)
..++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.+.|.+.-|+..+...+...|+++.+-.....+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3445567888999999999999999999999999999999999999999999999999999999887765555444
No 403
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=77.22 E-value=1.7e+02 Score=34.97 Aligned_cols=27 Identities=7% Similarity=0.055 Sum_probs=16.1
Q ss_pred HHHHhhhhhhcccchHHHHHHHHHhhhcCCC
Q 001357 595 ALSMLGDLELKNDDWVKAKETFRAASDATDG 625 (1093)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 625 (1093)
..+.+..+++..|++.+ |.++++..|.
T Consensus 748 fkFGlTKVFFr~GKFaE----FDqiMksDPe 774 (1259)
T KOG0163|consen 748 FKFGLTKVFFRPGKFAE----FDQIMKSDPE 774 (1259)
T ss_pred ccccceeEeecCcchHH----HHHHHhcCHH
Confidence 34455566777777743 6666665554
No 404
>KOG2393 consensus Transcription initiation factor IIF, large subunit (RAP74) [Transcription]
Probab=76.82 E-value=3.5 Score=46.37 Aligned_cols=11 Identities=27% Similarity=0.232 Sum_probs=5.8
Q ss_pred cCCCCCCCCCC
Q 001357 1026 AGLEDSDVDDE 1036 (1093)
Q Consensus 1026 ~~~~~~~~~~~ 1036 (1093)
.|..|+|+|++
T Consensus 336 ~desDeedd~e 346 (555)
T KOG2393|consen 336 SDESDEEDDLE 346 (555)
T ss_pred ccccccccCcc
Confidence 45566555543
No 405
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=76.69 E-value=90 Score=32.52 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 166 LGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
+.+|.+....|+|++.+.++.+++..+|..
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eL 34 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPEL 34 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS--
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCC
Confidence 344444444455555555555554444443
No 406
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=75.71 E-value=1.8e+02 Score=34.67 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=18.8
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhc
Q 001357 666 RVIVQHTSNLYAANGAGVVLAEKGQFDVSKDLFTQVQEAAS 706 (1093)
Q Consensus 666 ~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p 706 (1093)
++|.++.++ .-+++..++..-|.+.+ |.++...+|
T Consensus 739 ~aLgL~q~D--fkFGlTKVFFr~GKFaE----FDqiMksDP 773 (1259)
T KOG0163|consen 739 QALGLDQND--FKFGLTKVFFRPGKFAE----FDQIMKSDP 773 (1259)
T ss_pred HHhCCCccc--ccccceeEeecCcchHH----HHHHHhcCH
Confidence 344444333 33455666667776643 566666554
No 407
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.66 E-value=2.6 Score=49.92 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=4.9
Q ss_pred HHHHHHHhh
Q 001357 828 VRVFSHLSA 836 (1093)
Q Consensus 828 ~~~~~~l~~ 836 (1093)
++.|..|..
T Consensus 1290 ~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1290 MRTFKLLHS 1298 (1516)
T ss_pred hHHHHHHhc
Confidence 455666554
No 408
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=74.60 E-value=2.3 Score=46.39 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=11.2
Q ss_pred hhhhhHHHhcCCCCCCCCCC
Q 001357 1017 ENANDRLAAAGLEDSDVDDE 1036 (1093)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~~ 1036 (1093)
|.++--|-+--|.|+|+|+.
T Consensus 91 e~~e~~~~~~~l~~~~~de~ 110 (807)
T KOG0066|consen 91 EKPEKSLPANDLDDEDDDEA 110 (807)
T ss_pred cchhhcCcccccCCCCchhh
Confidence 34444555555777666644
No 409
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=74.30 E-value=27 Score=34.62 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=4.2
Q ss_pred HHHHHhhhcChhh
Q 001357 927 RVKEQWRSSTPAS 939 (1093)
Q Consensus 927 ~~~~~w~~~~~~~ 939 (1093)
..-+.|.+....+
T Consensus 117 qkie~we~~q~Gk 129 (190)
T PF06936_consen 117 QKIEMWESMQEGK 129 (190)
T ss_dssp HHHHHHHH-----
T ss_pred HHHHHHHHHHHHH
Confidence 3446674443333
No 410
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.97 E-value=2.3e+02 Score=35.52 Aligned_cols=181 Identities=15% Similarity=0.132 Sum_probs=94.8
Q ss_pred ChhHHHHHHHhcCCChHHHHHHHHHHHHcCCHHHHHHHHHhcCCCc--hhhhhhhhHHHHHHHHHHHHHHHHHhchhhhh
Q 001357 25 DASDILDILKAEQAPLDLWLIIAREYFKQGKVEQFRQILEEGSSPE--IDEYYADVRYERIAILNALGVYYTYLGKIETK 102 (1093)
Q Consensus 25 ~~~~~~~~l~~e~~~~~~~~~la~~y~~~g~~~~a~~~l~~a~~~~--~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~ 102 (1093)
+.+++.++|...+. +..|+..|...|+.++|+++|....... .+..+. . .+-.+..+...+|.-.
T Consensus 493 ~vee~e~~L~k~~~----y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~-~------~~e~ii~YL~~l~~~~-- 559 (877)
T KOG2063|consen 493 DVEEIETVLKKSKK----YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQL-D------GLEKIIEYLKKLGAEN-- 559 (877)
T ss_pred chHHHHHHHHhccc----HHHHHHHHHhccchHHHHHHHHHHhccccccccchh-h------hHHHHHHHHHHhcccc--
Confidence 45566666665544 7789999999999999999999987643 222111 1 1222333334444321
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCCChh-------------hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Q 001357 103 QREKEEHFILATQYYNKASRIDMHEPS-------------TWVGKGQLLLAKGEVEQASSAFKIVLEADRD-NVPALLGQ 168 (1093)
Q Consensus 103 ~~~r~~~~~~A~~~~~~a~~~~p~~~~-------------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l 168 (1093)
..-..++-.-.+..+|.... .--....-|+......-++.+++.++..+.. +...+..+
T Consensus 560 -------~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~l 632 (877)
T KOG2063|consen 560 -------LDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVL 632 (877)
T ss_pred -------hhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHH
Confidence 11333333333444443211 0111233456677788888999998876544 33333333
Q ss_pred HHHHHHc--------CChHHHHHH--HHHHHHh-------CCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 169 ACVEFNR--------GRYSDSLEF--YKRALQV-------HPSC------PGAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1093)
Q Consensus 169 a~~~~~~--------g~~~~Al~~--~~~al~~-------~p~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (1093)
+..|... ++-+++.+. .++.... .|.. ....+...+..+.++|+.++|+..|-..+.
T Consensus 633 l~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 633 LKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 3333221 222233333 2222221 1111 234556667777777777777777766553
No 411
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=72.32 E-value=1.3e+02 Score=31.55 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHh
Q 001357 424 DTGAALDAFKTARTLLKKAGEEVP-IEVLNNIGVIHFEKGEFESAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQF 502 (1093)
Q Consensus 424 ~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (1093)
.....+..+.++...+...+..-. ..+...+|..|+..|++++|..+|+.+........
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg-------------------- 212 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG-------------------- 212 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC--------------------
Confidence 345667888888888776544322 46677899999999999999999999865311000
Q ss_pred hhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001357 503 KDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLI 551 (1093)
Q Consensus 503 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 551 (1093)
-......++..+..|+...|+.+..+.+.-++
T Consensus 213 -----------------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 213 -----------------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred -----------------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 11124556777788888888888777665443
No 412
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=72.05 E-value=1.6e+02 Score=32.33 Aligned_cols=80 Identities=11% Similarity=0.025 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhh
Q 001357 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLE 603 (1093)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 603 (1093)
+-..|+....++...+++++-..+... +. .|-.|.-...++...|+..+|..++.+ + +. .....+|
T Consensus 207 dkrfw~lki~aLa~~~~w~eL~~fa~s--kK---sPIGyepFv~~~~~~~~~~eA~~yI~k---~-~~-----~~rv~~y 272 (319)
T PF04840_consen 207 DKRFWWLKIKALAENKDWDELEKFAKS--KK---SPIGYEPFVEACLKYGNKKEASKYIPK---I-PD-----EERVEMY 272 (319)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhC--CC---CCCChHHHHHHHHHCCCHHHHHHHHHh---C-Ch-----HHHHHHH
Confidence 455666677777777887766654432 22 234455555666677777777777766 1 11 3455566
Q ss_pred hcccchHHHHHHHH
Q 001357 604 LKNDDWVKAKETFR 617 (1093)
Q Consensus 604 ~~~g~~~~A~~~~~ 617 (1093)
++.|+|.+|.....
T Consensus 273 ~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 273 LKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHH
Confidence 77777777766643
No 413
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.58 E-value=4.4 Score=26.10 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 001357 42 LWLIIAREYFKQGKVEQFRQILEEGSSP 69 (1093)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~ 69 (1093)
+|..+-..|.+.|++++|..++.++.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 5889999999999999999999998654
No 414
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=71.01 E-value=1.4e+02 Score=31.17 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=9.2
Q ss_pred HcCCHHHHHHHHHHHHH
Q 001357 388 QLGQIEKAQELLRKAAK 404 (1093)
Q Consensus 388 ~~g~~~~A~~~l~~~l~ 404 (1093)
..|+.++|+.+.++++.
T Consensus 181 i~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 181 ILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp TSS-HHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHH
Confidence 35666666666555554
No 415
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.83 E-value=16 Score=38.17 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=33.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 348 LGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKA 402 (1093)
Q Consensus 348 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 402 (1093)
.+..|...|.+.+|+.+.++++..+|-+...+..+..++...|+--.+...|+++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4455556666666666666666666666666666666666666655555555544
No 416
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=70.73 E-value=1.1e+02 Score=29.87 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=64.0
Q ss_pred CchHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCcH
Q 001357 303 TKSHSYYNLARSYHS-KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLK-----LGDFRSALTNFEKVLEIYPDNC 376 (1093)
Q Consensus 303 ~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~l~~~p~~~ 376 (1093)
..+++.+.||..+.. +.+|+.|..+|..-.. ...++.+.+.+|..++. .+++..|+..|..+-. .+.+
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCd----en~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~ 105 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCD----ENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIP 105 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhccc----ccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCH
Confidence 344666666655443 3467777777765542 23444555555554432 3467777777777665 3466
Q ss_pred HHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001357 377 ETLKALGHIYVQL-----G--QIEKAQELLRKAAKIDPRDAQAFIDLGELL 420 (1093)
Q Consensus 377 ~~~~~la~~~~~~-----g--~~~~A~~~l~~~l~~~p~~~~~~~~la~~~ 420 (1093)
.+...+|.++..- + +..+|..++.++..+. +..+.+.|+..+
T Consensus 106 ~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~ 154 (248)
T KOG4014|consen 106 QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMY 154 (248)
T ss_pred HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHH
Confidence 7777777766543 2 3567777777776543 445555555554
No 417
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.94 E-value=23 Score=38.88 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CcHH
Q 001357 307 SYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEIYP---------DNCE 377 (1093)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---------~~~~ 377 (1093)
++..+|..|...|+++.|++.|-++...+......+..+.++..+-+..|+|.....+..++... | -.+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st-~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST-PDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC-chhhhhHHHhcCcc
Confidence 34445555555555555555555544333333333444555555555555555555555444332 1 0123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHH
Q 001357 378 TLKALGHIYVQLGQIEKAQELLRKAAK--------IDPRDAQAFIDLGELL 420 (1093)
Q Consensus 378 ~~~~la~~~~~~g~~~~A~~~l~~~l~--------~~p~~~~~~~~la~~~ 420 (1093)
+...-|.+....+++..|..+|-.+.. +.|.+..+|..+..+-
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALA 281 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALA 281 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhc
Confidence 445555566666688888877765532 1355666666655443
No 418
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=69.86 E-value=2e+02 Score=32.68 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=20.8
Q ss_pred chhhHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 001357 816 NTVLRVAELENAVRVFSHLSAASNLHLHGF 845 (1093)
Q Consensus 816 ~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~ 845 (1093)
-|.+.|.-|..--.+|..|..+..+|.+++
T Consensus 291 ~PastIqiLGAeKalf~~l~t~~~~pk~G~ 320 (414)
T PRK14552 291 MPASTIQVLGAEKALFRHLRTGAKPPKHGV 320 (414)
T ss_pred CCchHHHHhchhhHHHHHhccCCCCCCceE
Confidence 344455556666668999998877776664
No 419
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=69.37 E-value=2.1e+02 Score=32.68 Aligned_cols=93 Identities=11% Similarity=0.083 Sum_probs=63.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCC----hhHHHHhhhhhhcccchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHH
Q 001357 565 LAAIAKARNNLQLSIELVNEALKVNGKY----PNALSMLGDLELKNDDWVKAKETFRAASDATDGKDSYATLSLGNWNYF 640 (1093)
Q Consensus 565 la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~ 640 (1093)
++.......+.+.+..++.+.-.. |.. +.+...+...++..|..+.++.++..=+..+--+|.++.+.|.+. ++
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s-~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~-fl 149 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHS-PNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH-FL 149 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcC-cccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH-Hh
Confidence 334444444566666666654332 222 224456777888999999999998876666555678888888888 88
Q ss_pred HHHhhcccCchHHHHHHHHHHHHHHHHHhhC
Q 001357 641 AALRNEKRAPKLEATHLEKAKELYTRVIVQH 671 (1093)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 671 (1093)
.. |++..|.++...+....
T Consensus 150 ~~------------~~~~~A~~V~~~~~lQe 168 (429)
T PF10037_consen 150 KK------------GNYKSAAKVATEMMLQE 168 (429)
T ss_pred hc------------ccHHHHHHHHHHHHHhh
Confidence 88 99999999887765543
No 420
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=69.22 E-value=50 Score=36.87 Aligned_cols=11 Identities=82% Similarity=0.996 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 001357 891 AEEARRKAEEQ 901 (1093)
Q Consensus 891 ~~~~~~~~~~~ 901 (1093)
.+|.+|+++|+
T Consensus 422 reearrkaeee 432 (708)
T KOG3654|consen 422 REEARRKAEEE 432 (708)
T ss_pred HHHHHHhhHhh
Confidence 34444554444
No 421
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.88 E-value=3.1e+02 Score=34.40 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.6
Q ss_pred HHHHHHcCCHHHHHHHHHhcC
Q 001357 47 AREYFKQGKVEQFRQILEEGS 67 (1093)
Q Consensus 47 a~~y~~~g~~~~a~~~l~~a~ 67 (1093)
|..++.+|+|++|...|+++.
T Consensus 353 a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 353 AFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHhhhHHHHHHHHHhhc
Confidence 778899999999999999864
No 422
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.34 E-value=1.1e+02 Score=37.17 Aligned_cols=242 Identities=17% Similarity=0.062 Sum_probs=101.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH-HHHHHHH---HHHc
Q 001357 135 GQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAI-RLGIGLC---RYKL 210 (1093)
Q Consensus 135 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~-~~~la~~---~~~~ 210 (1093)
-.+++..|.|+.|+.++-. .+.+..--..+|.++...|-+.-.-..-...+..++.+++.+ +..+... .+..
T Consensus 265 f~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 4667889999999999877 223332223334444444433333332255555555442211 1122222 2345
Q ss_pred CCHHHHHHHHHHHHhh-CCCcHH-HHHHHHHHHHHhh-------h----HHhHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 001357 211 GQLGKARQAFQRALQL-DPENVE-ALVALAVMDLQAN-------E----AAGIRKGMEKMQRAFEIYPYC---AMALNYL 274 (1093)
Q Consensus 211 g~~~~A~~~~~~al~~-~p~~~~-a~~~la~~~~~~~-------~----~~~~~~Al~~~~~al~~~p~~---~~~~~~l 274 (1093)
.+...|+.+|--+-.. +|.... .+..+..+.+..+ + -....-.+....+.+...... ..+....
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~ 420 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQA 420 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHH
Confidence 6777777776544322 122221 1222232222222 1 001233444433344443322 2344555
Q ss_pred HHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC---CC--------CCchh
Q 001357 275 ANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEIN---KP--------HEFIF 343 (1093)
Q Consensus 275 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~--------~~~~~ 343 (1093)
|.-....|+++.|+.+|.-+- +|+.++.++.+.+...- .. .....
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~------------------------~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~ 476 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAE------------------------EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIE 476 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT-------------------------HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHh------------------------hHHHHHHHHHHHHHHHHcCccccccccchhhhHHH
Confidence 667778888888888887652 56666666665554210 11 11111
Q ss_pred hHHHHHHHHHHcCCH-----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001357 344 PYYGLGQVQLKLGDF-----RSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFI 414 (1093)
Q Consensus 344 ~~~~la~~~~~~g~~-----~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 414 (1093)
.-..+...|...+.. ......|..++.+ .-..-++..|+++.|+..++++ .+-|.+....-
T Consensus 477 la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L---------~~ff~~~~~g~~~~AL~~i~~L-~liP~~~~~V~ 542 (613)
T PF04097_consen 477 LAKEILERYKSNPHISSKVSRKNRETFQLLLDL---------AEFFDLYHAGQYEQALDIIEKL-DLIPLDPSEVR 542 (613)
T ss_dssp HHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHH---------HHHHHHHHTT-HHHHHHHHHHT-T-S-S-HHHHH
T ss_pred HHHHHHHHHHhCcchHhhccHHHHHHHHHHHHH---------HHHHHHHHcCCHHHHHHHHHhC-CCCCCCHHHHH
Confidence 112222333333222 4556667766653 2234456778888888888773 46675554433
No 423
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.26 E-value=10 Score=27.32 Aligned_cols=27 Identities=37% Similarity=0.492 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 001357 43 WLIIAREYFKQGKVEQFRQILEEGSSP 69 (1093)
Q Consensus 43 ~~~la~~y~~~g~~~~a~~~l~~a~~~ 69 (1093)
-+.+|.+|+..|+.+.|+.+|+..+..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 367999999999999999999998753
No 424
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=67.99 E-value=1.8e+02 Score=33.34 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 166 LGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 166 ~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
..+|..++..|+|+-|...|+.+.+-
T Consensus 212 R~LAD~aFml~Dy~~A~s~Y~~~k~D 237 (414)
T PF12739_consen 212 RRLADLAFMLRDYELAYSTYRLLKKD 237 (414)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 44555555555555555555555443
No 425
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=67.69 E-value=12 Score=24.20 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 001357 212 QLGKARQAFQRALQLDPENVEALVALAV 239 (1093)
Q Consensus 212 ~~~~A~~~~~~al~~~p~~~~a~~~la~ 239 (1093)
+.+.|..+|++++...|.++..|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4455556666666655655555555443
No 426
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=67.60 E-value=9.9 Score=26.39 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 001357 560 DAYLRLAAIAKARNNLQLSIELVNEALKV 588 (1093)
Q Consensus 560 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 588 (1093)
+++..||.+....++|.+|+.-|.+++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666777777777777777777776665
No 427
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=67.15 E-value=2.2e+02 Score=32.62 Aligned_cols=43 Identities=19% Similarity=0.046 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 001357 195 CPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVEALVALA 238 (1093)
Q Consensus 195 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 238 (1093)
.+....-.+|.+++.+|+|+.|...|+-+..-.- +-.+|..+|
T Consensus 206 S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~-~Dkaw~~~A 248 (414)
T PF12739_consen 206 SPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFK-NDKAWKYLA 248 (414)
T ss_pred ChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHh-hchhHHHHH
Confidence 3445566799999999999999999998876432 334444444
No 428
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.83 E-value=6.4 Score=28.36 Aligned_cols=25 Identities=20% Similarity=0.492 Sum_probs=15.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Q 001357 718 INLAHVYFAQGNFALAMKMYQNCLR 742 (1093)
Q Consensus 718 ~~lg~~~~~~g~~~~A~~~~~~al~ 742 (1093)
++||..|...|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566666666666666666666664
No 429
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=66.00 E-value=6.8 Score=25.15 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHH
Q 001357 677 AANGAGVVLAEKGQFDVSKDLFTQVQE 703 (1093)
Q Consensus 677 a~~~la~~~~~~g~~~~A~~~~~~~~~ 703 (1093)
+|+.+...|.+.|++++|..+|.++.+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 356667777777777777777777765
No 430
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.59 E-value=1.5e+02 Score=31.91 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=57.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHH
Q 001357 128 PSTWVGKGQLLLAKGEVEQASSAFKIVLEADR------DNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC--PGAI 199 (1093)
Q Consensus 128 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~ 199 (1093)
..++..+|..|++.|+-+.|++.|.+.....- +-..+.+.+|..|....-..+.+.....+++..-+. ...+
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 46788888889999999988888887665421 123445556666555544444444444444443322 1122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001357 200 RLGIGLCRYKLGQLGKARQAFQRALQL 226 (1093)
Q Consensus 200 ~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1093)
....|..++...++.+|-..|-.++..
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 333455555556666666666655543
No 431
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=65.40 E-value=5.9 Score=26.20 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcCCC
Q 001357 41 DLWLIIAREYFKQGKVEQFRQILEEGSSP 69 (1093)
Q Consensus 41 ~~~~~la~~y~~~g~~~~a~~~l~~a~~~ 69 (1093)
.+|..+..++.+.|+++.|..+|+.+...
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999987543
No 432
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=65.36 E-value=2.1e+02 Score=31.08 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001357 347 GLGQVQLKLGDFRSALTNFEKVLEIYPD---NCETLKALGHIYVQLGQIEKAQELLRKAAKI 405 (1093)
Q Consensus 347 ~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 405 (1093)
.-+..+...+.++.|+..++..+...+. .....+.++.++...|.++-|..+|..+.+.
T Consensus 218 ~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 218 EEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456666777777777777765443222 2234556677777777777777777776653
No 433
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.35 E-value=42 Score=33.68 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=32.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 001357 137 LLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSC 195 (1093)
Q Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~ 195 (1093)
.++..+.+.+|+...+.-++..|.+......+-.++.-.|+|++|+.-++-+-.+.|+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34445555555555555555555555555555555555555555555555555555554
No 434
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=64.79 E-value=6.8 Score=25.91 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCc
Q 001357 42 LWLIIAREYFKQGKVEQFRQILEEGSSPE 70 (1093)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~ 70 (1093)
+|..+...|.+.|++++|..+|..+...+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 58899999999999999999999986543
No 435
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.73 E-value=25 Score=36.73 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLGQLGKARQAFQRAL 224 (1093)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 224 (1093)
+...+..|...|.+.+|+.+.++++..+|-+ ...+..+-..+..+|+--.|...|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~-e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLS-EQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445666777788888888888888888877 5667777778888888777777766654
No 436
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.71 E-value=16 Score=23.57 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001357 143 EVEQASSAFKIVLEADRDNVPALLGQA 169 (1093)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~a~~~la 169 (1093)
+++.|..+|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344445555555554444444444433
No 437
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=64.66 E-value=97 Score=27.05 Aligned_cols=14 Identities=14% Similarity=0.295 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 001357 859 HLLDAAKIHREAAE 872 (1093)
Q Consensus 859 ~l~~~~~~~~~~~~ 872 (1093)
++|+.....+..+.
T Consensus 59 ~ILDd~~~~l~~sk 72 (105)
T PF11214_consen 59 SILDDTESKLNDSK 72 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444343333333
No 438
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.81 E-value=1e+02 Score=35.89 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 112 LATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 112 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
.|.++..++ ++..-|-.+|...+..|++..|.++|.++-.. ..++ .++...|+-+.-..+-..+-+.
T Consensus 655 iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~-----~~Ll---Ll~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 655 IAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL-----GSLL---LLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred HHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch-----hhhh---hhhhhcCChhHHHHHHHHHHhh
Confidence 555544433 45566777888888888888888888776432 2222 2233344433222222222222
Q ss_pred CCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001357 192 HPSCPGAIRLGIGLCRYKLGQLGKARQAFQR 222 (1093)
Q Consensus 192 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 222 (1093)
...+ . .-.||+..|++++++..+..
T Consensus 722 g~~N-~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 722 GKNN-L-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cccc-h-----HHHHHHHcCCHHHHHHHHHh
Confidence 2222 1 12467777888777776654
No 439
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=63.74 E-value=1.2e+02 Score=32.51 Aligned_cols=62 Identities=23% Similarity=0.181 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhhc
Q 001357 544 ASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLELK 605 (1093)
Q Consensus 544 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 605 (1093)
|..+|..++...|+....|+.+|.++...|+.-.|+.+|-+++-.....+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999987765568888888888766
No 440
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=62.98 E-value=96 Score=34.31 Aligned_cols=63 Identities=22% Similarity=0.184 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 307 SYYNLARSYHSKGDYEKAGLYYMASVKEI-NKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE 370 (1093)
Q Consensus 307 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 370 (1093)
++..+.+.+.-+|++....+.++..-... +..|.. .+-+..|.+|+..++|.+|+..|-.++-
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c-~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMC-RVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccce-eEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777554333333322211 122222 2337788888889999999988887764
No 441
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.73 E-value=55 Score=38.78 Aligned_cols=80 Identities=9% Similarity=-0.056 Sum_probs=40.4
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHH---HcCChHHHHHHHHHHHHhCCCChH
Q 001357 127 EPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNV------PALLGQACVEF---NRGRYSDSLEFYKRALQVHPSCPG 197 (1093)
Q Consensus 127 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~la~~~~---~~g~~~~Al~~~~~al~~~p~~~~ 197 (1093)
.+++...+-..|....+|+.-+++.+.. +.-|+.. ...+..|.++- +-|+-.+|+...-.+++......+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 3455555666666667777666666554 3334211 11122222222 236666777766666665543334
Q ss_pred HHHHHHHHHH
Q 001357 198 AIRLGIGLCR 207 (1093)
Q Consensus 198 ~~~~~la~~~ 207 (1093)
+++...|.+|
T Consensus 279 Dm~Cl~GRIY 288 (1226)
T KOG4279|consen 279 DMYCLCGRIY 288 (1226)
T ss_pred ceeeeechhh
Confidence 5555555554
No 442
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=62.49 E-value=2.3e+02 Score=30.66 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 001357 358 FRSALTNFEKVLEIYPDNCETLKALGHIYVQL 389 (1093)
Q Consensus 358 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 389 (1093)
-++|+.+-.-+..+.|..++++-.++.+..+.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~ 243 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQE 243 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35677777777778888888877777766654
No 443
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.44 E-value=43 Score=33.61 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=46.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001357 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRD 409 (1093)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~ 409 (1093)
.-+++.+...+|+...+.-++..|.+....+.+-.+++-.|++++|...++-+-.+.|++
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 345667778888888888888888888888888888888888888888888777777765
No 444
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=62.31 E-value=74 Score=29.33 Aligned_cols=82 Identities=18% Similarity=0.175 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHh-----------cCCCCCCchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhc
Q 001357 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAA-----------SGSVFVQMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFY 745 (1093)
Q Consensus 677 a~~~la~~~~~~g~~~~A~~~~~~~~~~~-----------p~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 745 (1093)
...++..++.+.|+.+....+++.+-... |+++...+..++..+.++|...|++..|+.+.....+.|+
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 44566777788888888888887766544 2222334567777778888888888888888888888877
Q ss_pred CCCCHHHHHHHHH
Q 001357 746 YNTDAQILLYLAR 758 (1093)
Q Consensus 746 ~~~~~~~l~~la~ 758 (1093)
-+-...+|..|-.
T Consensus 84 I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 84 IPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHH
Confidence 5555666665443
No 445
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=61.48 E-value=97 Score=30.33 Aligned_cols=126 Identities=13% Similarity=0.151 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhcCC--CchhhhhhhhHHHHHHHHHHHHHHHHHh--chhh---hhhhHhHHHHHH
Q 001357 40 LDLWLIIAREYFKQGKVEQFRQILEEGSS--PEIDEYYADVRYERIAILNALGVYYTYL--GKIE---TKQREKEEHFIL 112 (1093)
Q Consensus 40 ~~~~~~la~~y~~~g~~~~a~~~l~~a~~--~~~~~~~~~~~~~~~~~~~~la~~y~~~--g~~~---~~~~~r~~~~~~ 112 (1093)
.++++.-+..|++.|++.+|.++.+.+-. ..+...- ......+. +..++.+. |..- .+...+.-=++.
T Consensus 13 ~dfyf~~~c~aFR~~r~~dFr~~rdi~e~ll~~~~~~~-a~~~k~l~----i~QfLsRI~eG~~LD~~Fd~~~~~TPLES 87 (200)
T cd00280 13 LDFYFHSACRAFREGRYEDFRRTRDIAEALLVGPLKLT-ATQLKTLR----IMQFLSRIAEGKNLDCQFENDEELTPLES 87 (200)
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHhcccccc-ccchhHhH----HHHHHHHHHcCCCCCCccCCCCCcChHHH
Confidence 46788899999999999999887665411 1111000 00001112 22222222 2211 011111223446
Q ss_pred HHHHHHHHHhcCCCCh--------hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001357 113 ATQYYNKASRIDMHEP--------STWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACV 171 (1093)
Q Consensus 113 A~~~~~~a~~~~p~~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 171 (1093)
|+.+++.+-+..|... ..-.....++...|.+++|.+.+++... +|++......++.+
T Consensus 88 Al~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 88 ALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 7777766655444210 1112234556677777777777777666 66555444444444
No 446
>PLN03086 PRLI-interacting factor K; Provisional
Probab=60.52 E-value=59 Score=38.25 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 001357 874 EEQQNRQRQEAARQA 888 (1093)
Q Consensus 874 ~e~~~~~~~~~~~~~ 888 (1093)
.+.+++.|.+.||..
T Consensus 12 ~~~~~~~~~~~~~~~ 26 (567)
T PLN03086 12 LEREQRERKQRAKLK 26 (567)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 447
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.09 E-value=1.1e+02 Score=30.96 Aligned_cols=12 Identities=17% Similarity=0.446 Sum_probs=4.9
Q ss_pred HhhHHHHHHHHH
Q 001357 909 RKLEDEQKRLRQ 920 (1093)
Q Consensus 909 ~~~~~~~~~~~~ 920 (1093)
.|++++.|++++
T Consensus 155 ~k~ee~~RkakE 166 (299)
T KOG3054|consen 155 LKEEEKERKAKE 166 (299)
T ss_pred HhHHHHHHHHHH
Confidence 333444444443
No 448
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.02 E-value=51 Score=36.29 Aligned_cols=99 Identities=17% Similarity=0.093 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-------CCCCCc
Q 001357 269 MALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEI-------NKPHEF 341 (1093)
Q Consensus 269 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~ 341 (1093)
.++..++.+|...|+.+.|++.|.++.............+.++..+-...|+|..-..+..++.... ...+..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4556677777777777777777777665544444555677777777788888877777777776521 011222
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 342 IFPYYGLGQVQLKLGDFRSALTNFEKVL 369 (1093)
Q Consensus 342 ~~~~~~la~~~~~~g~~~~A~~~~~~~l 369 (1093)
. ...-|.+.+..++|..|..+|-.+.
T Consensus 231 l--~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 L--KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred h--HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2 3334555566669999998886653
No 449
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.86 E-value=1.4e+02 Score=33.74 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HH--HHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 132 VGKGQLLLAKGEVEQASSAFKIVLEADRDNVP--AL--LGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 132 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--a~--~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
...+..++..++|..|...|..+...-|.+.. .+ +..|..+...-++.+|...++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44667777888888888888887765333332 22 22333444556677777777766543
No 450
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=59.40 E-value=88 Score=36.59 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=6.9
Q ss_pred chHHHHhhhcCC
Q 001357 1041 ITAARRRRALSE 1052 (1093)
Q Consensus 1041 ~~~~~~~~~~~~ 1052 (1093)
|.+.+.||-|-.
T Consensus 502 S~~VsarrPlAq 513 (811)
T KOG4364|consen 502 SQVVSARRPLAQ 513 (811)
T ss_pred ccccccCCcccc
Confidence 555666666653
No 451
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=59.28 E-value=28 Score=32.73 Aligned_cols=52 Identities=23% Similarity=0.132 Sum_probs=40.1
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 001357 126 HEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGR 177 (1093)
Q Consensus 126 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 177 (1093)
...+..+..+...+..|++.-|..+++.++..+|+|..+...++.++..+|.
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 4556778888888899999999999999999999998888888887766553
No 452
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=58.72 E-value=13 Score=24.46 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHh
Q 001357 677 AANGAGVVLAEKGQFDVSKDLFTQVQEAA 705 (1093)
Q Consensus 677 a~~~la~~~~~~g~~~~A~~~~~~~~~~~ 705 (1093)
+++.+...|.+.|++++|..+|..+....
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 35666777777777777777777776543
No 453
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.69 E-value=4.3e+02 Score=32.52 Aligned_cols=57 Identities=9% Similarity=0.103 Sum_probs=33.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHh
Q 001357 382 LGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL-ISSDTGAALDAFKTARTLLKK 441 (1093)
Q Consensus 382 la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~-~~~~~~~A~~~~~~a~~~~~~ 441 (1093)
+..++.+..+++.++.+.+.. .+.++..|..+-..+ ..+..+.-.+...++++....
T Consensus 711 l~~~~~q~~d~E~~it~~~~~---g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~ 768 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERL---GKEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEM 768 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHh---CccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHh
Confidence 344455556666666665543 455667777666666 666555555555555555444
No 454
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=58.52 E-value=2.7e+02 Score=30.17 Aligned_cols=161 Identities=16% Similarity=0.054 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--------------------------ChHHHHHHHHHHHhccCCCCC
Q 001357 250 IRKGMEKMQRAFEIYPYCAMALNYLANHFFFTG--------------------------QHFLVEQLTETALAVTNHGPT 303 (1093)
Q Consensus 250 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g--------------------------~~~~A~~~~~~al~~~~~~~~ 303 (1093)
-.+|+.+-.-...+.|..+.++-.++.+.+... -.+++..++.+++......|.
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 467777777777778888877777766655432 234455566666654433332
Q ss_pred chHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcH
Q 001357 304 KSHSYYNLARSYHS-----KGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLEI--YPDNC 376 (1093)
Q Consensus 304 ~~~~~~~la~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 376 (1093)
...-.++.++.. .-+|..-..+|.-..... |+ +.+-++.+....+..-...++...+.+... -....
T Consensus 292 --qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~a---pS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~ 365 (415)
T COG4941 292 --QLQAAIAALHARARRAEDTDWPAIDALYDALEQAA---PS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYH 365 (415)
T ss_pred --HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhC---CC-CeEeehHHHHHHHhhhHHhHHHHHHHhhccccccccc
Confidence 222222222221 224555555555444321 11 123345555555555566666666655443 12233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001357 377 ETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDL 416 (1093)
Q Consensus 377 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~l 416 (1093)
..+...|.++.+.|+.++|...|++++.+.++.....+..
T Consensus 366 ~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 366 LYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred ccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 4555667777777777777777777777776655544433
No 455
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=58.32 E-value=16 Score=24.06 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 001357 677 AANGAGVVLAEKGQFDVSKDLFTQVQEA 704 (1093)
Q Consensus 677 a~~~la~~~~~~g~~~~A~~~~~~~~~~ 704 (1093)
.++.+..++.+.|+++.|..+|..+.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4666777777777777777777777664
No 456
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=58.25 E-value=14 Score=39.71 Aligned_cols=77 Identities=22% Similarity=0.159 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001357 343 FPYYGLGQVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGEL 419 (1093)
Q Consensus 343 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~ 419 (1093)
..+.+++.+-++.+.+..|+.....++..++....+++..+..+....++++|++.+..+....|++..+...+..+
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 34556778888889999998888888888888889999999999999999999999999999999887666555443
No 457
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=57.94 E-value=1.9e+02 Score=28.26 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-----C--CchhHHHHHHHHHHH
Q 001357 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK-----G--QFDVSKDLFTQVQEA 704 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~-----g--~~~~A~~~~~~~~~~ 704 (1093)
+++..|++.|..+.. -+.+.+...+|.++... + +..+|+.++.++-+.
T Consensus 87 ~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred cCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 445555555554443 23334444444443321 1 244555555555554
No 458
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.41 E-value=99 Score=36.81 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=41.8
Q ss_pred cchHHHHHHHHHhhhcCCCCChHHHHHhHhHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 001357 607 DDWVKAKETFRAASDATDGKDSYATLSLGNWNYFAALRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLA 686 (1093)
Q Consensus 607 g~~~~A~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~ 686 (1093)
|+-.+|+...-.+++......+..++..|.+ |-..--. +.....+..+.|+.+|+++++..|.- ++-.+++.++.
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRI-YKDmF~~---S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~ 331 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRI-YKDMFIA---SNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLR 331 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechh-hhhhhhc---cCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHH
Confidence 5566666666666654433222222223444 3322000 00111288899999999999999863 33344555555
Q ss_pred hcC
Q 001357 687 EKG 689 (1093)
Q Consensus 687 ~~g 689 (1093)
..|
T Consensus 332 aaG 334 (1226)
T KOG4279|consen 332 AAG 334 (1226)
T ss_pred Hhh
Confidence 444
No 459
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.58 E-value=1.7e+02 Score=33.03 Aligned_cols=62 Identities=18% Similarity=0.114 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 001357 165 LLGQACVEFNRGRYSDSLEFYKRALQVHPSCPG---AIRLGIGLCRYKLGQLGKARQAFQRALQL 226 (1093)
Q Consensus 165 ~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~ 226 (1093)
....+..+++.++|..|..+|..+...-|.... ...+..|..+|..-++.+|...++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 356677889999999999999999986333312 23344677788999999999999998764
No 460
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=56.48 E-value=1.7e+02 Score=27.11 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc--------------------CCchhHHHHHHHHHHHhcCCCCCCch
Q 001357 655 THLEKAKELYTRVIVQHTSNLYAANGAGVVLAEK--------------------GQFDVSKDLFTQVQEAASGSVFVQMP 714 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~--------------------g~~~~A~~~~~~~~~~~p~~~~~~~~ 714 (1093)
|..++..++..+.....|-...-|.---.+-... |++..-+..|-.+ ...
T Consensus 16 G~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~----------n~~ 85 (161)
T PF09205_consen 16 GDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKR----------NKL 85 (161)
T ss_dssp T-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHT----------T--
T ss_pred chHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHh----------cch
Q ss_pred hHHHHHH-HHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 001357 715 DVWINLA-HVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIH 778 (1093)
Q Consensus 715 ~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 778 (1093)
.-|+.+| .++..+|+-++=-+.+....+. ...+|+++..+|.+|.+.|+..+|-+.+.+|.+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn--~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN--EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 461
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=56.13 E-value=2.9e+02 Score=31.10 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001357 917 RLRQQEEHFQRVKEQWR 933 (1093)
Q Consensus 917 ~~~~~~~~~~~~~~~w~ 933 (1093)
....+++..+..+|+-|
T Consensus 429 ~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 429 ALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455566677777774
No 462
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.40 E-value=5.6e+02 Score=32.86 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 001357 197 GAIRLGIGLCRYKLGQLGKARQAFQRALQ 225 (1093)
Q Consensus 197 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 225 (1093)
+..++.+|.||...|...+|+.+|.++..
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhh
Confidence 44566666666667777777777666654
No 463
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=55.29 E-value=59 Score=35.75 Aligned_cols=9 Identities=11% Similarity=0.276 Sum_probs=3.7
Q ss_pred HHHHHHHHh
Q 001357 827 AVRVFSHLS 835 (1093)
Q Consensus 827 a~~~~~~l~ 835 (1093)
++.+.+.+.
T Consensus 240 v~~l~D~~~ 248 (321)
T PF07946_consen 240 VFYLIDKLA 248 (321)
T ss_pred HHHHHHHhh
Confidence 344444443
No 464
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.94 E-value=1.6e+02 Score=31.01 Aligned_cols=167 Identities=11% Similarity=0.004 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--C
Q 001357 107 EEHFILATQYYNKASRIDMHEPSTWVGKGQLLLA--------KGEVEQASSAFKIVLEADRDNVPALLGQACVEFNR--G 176 (1093)
Q Consensus 107 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~--------~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~--g 176 (1093)
...-..|++.-...+..+|..-.+|..+-.+... .--++.-+..+..++..+|.+-..|...-.++-.- .
T Consensus 45 keys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~ 124 (328)
T COG5536 45 KEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKP 124 (328)
T ss_pred hhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCc
Confidence 3344567777777777778777777666554433 12256667778888888888888887776666554 5
Q ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH---HHHHHhhhH
Q 001357 177 RYSDSLEFYKRALQVHPSCPGAIRLGI------GLCRYKLGQLGKARQAFQRALQLDPENVEALVALA---VMDLQANEA 247 (1093)
Q Consensus 177 ~~~~Al~~~~~al~~~p~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la---~~~~~~~~~ 247 (1093)
++..-+.+.++++..+|.+- .+|... +.-......+..-.+.-..++..++.|..+|...- ...+..|+.
T Consensus 125 ~~~rEl~itkklld~DsrNy-H~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~v 203 (328)
T COG5536 125 SWGRELFITKKLLDSDSRNY-HVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDV 203 (328)
T ss_pred ccchhHHHHHHHhccccccc-ceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhccc
Confidence 67777778888888887772 222211 11123333344445555566777888888876662 223334432
Q ss_pred Hh---HHHHHHHHHHHHHhCCCcHHHHHHH
Q 001357 248 AG---IRKGMEKMQRAFEIYPYCAMALNYL 274 (1093)
Q Consensus 248 ~~---~~~Al~~~~~al~~~p~~~~~~~~l 274 (1093)
.+ +.+-+++.-.++-.+|.+..++..+
T Consensus 204 isqk~l~~eL~~i~~~if~~p~~~S~w~y~ 233 (328)
T COG5536 204 ISQKYLEKELEYIFDKIFTDPDNQSVWGYL 233 (328)
T ss_pred chHHHHHHHHHHHHhhhhcCccccchhhHH
Confidence 11 4455555556666677766666544
No 465
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=54.16 E-value=13 Score=43.96 Aligned_cols=14 Identities=29% Similarity=0.176 Sum_probs=8.3
Q ss_pred ccCCCCCCcchhcc
Q 001357 985 MMDYREEPEDEDAS 998 (1093)
Q Consensus 985 ~~~~~~~~~~~~~~ 998 (1093)
++++.|+.++++-+
T Consensus 844 ~~~~~~e~~ddd~e 857 (988)
T KOG2038|consen 844 EDGSLPEEEDDDYE 857 (988)
T ss_pred cCCcCcccccchhh
Confidence 45666766665443
No 466
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=53.63 E-value=43 Score=35.92 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=18.0
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 001357 217 RQAFQRALQLDPENVEALVALAVMDLQANEAAGIRKGMEKMQRAF 261 (1093)
Q Consensus 217 ~~~~~~al~~~p~~~~a~~~la~~~~~~~~~~~~~~Al~~~~~al 261 (1093)
+.+|.+|+.+.|.+...+..||.++...|+ .-.|+-.|-+++
T Consensus 2 ~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~---~l~avy~y~Rsl 43 (278)
T PF10373_consen 2 ERYYRKAIRLLPSNGNPYNQLAVLASYQGD---DLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHH-TTBSHHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccchhhhhccccc---hHHHHHHHHHHH
Confidence 344444444444444444444444444444 444444444444
No 467
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=53.37 E-value=6.3 Score=43.43 Aligned_cols=12 Identities=50% Similarity=0.828 Sum_probs=9.4
Q ss_pred hcCCCCCCCCCC
Q 001357 1025 AAGLEDSDVDDE 1036 (1093)
Q Consensus 1025 ~~~~~~~~~~~~ 1036 (1093)
.+|++|||+++|
T Consensus 106 E~GFAdSDDEdD 117 (458)
T PF10446_consen 106 EAGFADSDDEDD 117 (458)
T ss_pred cccccccccccc
Confidence 478999987765
No 468
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.96 E-value=1.9e+02 Score=30.99 Aligned_cols=100 Identities=16% Similarity=0.079 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHHHHH
Q 001357 42 LWLIIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYNKAS 121 (1093)
Q Consensus 42 ~~~~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~~a~ 121 (1093)
..+.+|..|-+.++|..|.+.|.-....... +.....-++.....++.+|+..+... +|..+.+++.
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~--~~~d~~~kl~l~iriarlyLe~~d~v-----------eae~~inRaS 171 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVGIPLDTGQ--KAYDVEQKLLLCIRIARLYLEDDDKV-----------EAEAYINRAS 171 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccCcccch--hhhhhHHHHHHHHHHHHHHHhcCcHH-----------HHHHHHHHHH
Confidence 7789999999999999999999865322111 11222244555666777777766544 5555555542
Q ss_pred --hcCCCChhhHHH----HHHHHHHcCCHHHHHHHHHHH
Q 001357 122 --RIDMHEPSTWVG----KGQLLLAKGEVEQASSAFKIV 154 (1093)
Q Consensus 122 --~~~p~~~~~~~~----~a~~~~~~g~~~~A~~~~~~a 154 (1093)
..+..++...+. .|+++-..++|-+|...|-++
T Consensus 172 il~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 172 ILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred HhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222344443332 234444445555555554443
No 469
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.93 E-value=3.1e+02 Score=28.94 Aligned_cols=176 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHH---hcCCHHHHHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 001357 392 IEKAQELLRKAAKI--DPRDAQAFIDLGELL---ISSDTGAALDAF-KTARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE 465 (1093)
Q Consensus 392 ~~~A~~~l~~~l~~--~p~~~~~~~~la~~~---~~~~~~~A~~~~-~~a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 465 (1093)
.++-..-+-+.+.- +|.....|+.+-.-. ....-++-++-+ ++..+.-...+.....+++.++|..|.+.++.+
T Consensus 53 ~d~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 53 IDKCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred HHhhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHhcchhhhhcccccchhhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHH
Q 001357 466 SAHQSFKDALGDGIWLTLLDSKTKTYVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAAS 545 (1093)
Q Consensus 466 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 545 (1093)
.+.+++.+.+....... ..-+.......+|.+|..+.-.++.+
T Consensus 133 ng~~~~~~~~~~a~stg-------------------------------------~KiDv~l~kiRlg~~y~d~~vV~e~l 175 (412)
T COG5187 133 NGFEWMRRLMRDAMSTG-------------------------------------LKIDVFLCKIRLGLIYGDRKVVEESL 175 (412)
T ss_pred hHHHHHHHHHHHHHhcc-------------------------------------cchhhHHHHHHHHHhhccHHHHHHHH
Q ss_pred HHHHHHHHhcCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCChhHHHHhhhhhh
Q 001357 546 VLYRLILFKYQDY---VDAYLRLAAIAKARNNLQLSIELVNEALKVNGKYPNALSMLGDLEL 604 (1093)
Q Consensus 546 ~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 604 (1093)
+....+++...+. .......|.......++.+|..++-..+........+-+.-+.-|.
T Consensus 176 E~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa 237 (412)
T COG5187 176 EVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYA 237 (412)
T ss_pred HHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHH
No 470
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=51.76 E-value=5.2e+02 Score=31.45 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001357 524 KVTVLFNLARLLEQIHDTVAASVLYRLILFKYQDYVDAYLRLAAIAKARNNLQLSIELVNEALK 587 (1093)
Q Consensus 524 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 587 (1093)
...+....|.-....|++..|+.+|.- .|+++.++.++.+.+.
T Consensus 413 ~~~i~~~~A~~~e~~g~~~dAi~Ly~L---------------------a~~~d~vl~lln~~Ls 455 (613)
T PF04097_consen 413 LREIIEQAAREAEERGRFEDAILLYHL---------------------AEEYDKVLSLLNRLLS 455 (613)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHH---------------------TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHH---------------------HhhHHHHHHHHHHHHH
Confidence 445667778889999999999988864 3577777777776665
No 471
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.17 E-value=2.4e+02 Score=30.36 Aligned_cols=22 Identities=14% Similarity=0.315 Sum_probs=11.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 001357 383 GHIYVQLGQIEKAQELLRKAAK 404 (1093)
Q Consensus 383 a~~~~~~g~~~~A~~~l~~~l~ 404 (1093)
|...+...+|.+|..+|-..+.
T Consensus 188 Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 188 GLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHhHHHHHHHHHHHcc
Confidence 3334444556666655555543
No 472
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.04 E-value=5.9e+02 Score=31.56 Aligned_cols=375 Identities=12% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHcCChHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcC
Q 001357 277 HFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLG 356 (1093)
Q Consensus 277 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g 356 (1093)
+....|+.+.|+....+. +++..|..||.....+|+..-|...|++.-. +..|..+|.-.|
T Consensus 652 LaLe~gnle~ale~akkl--------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn-----------fekLsfLYliTg 712 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKL--------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN-----------FEKLSFLYLITG 712 (1202)
T ss_pred eehhcCCHHHHHHHHHhc--------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh-----------hhheeEEEEEeC
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--hcCCHHHHHHHHHH
Q 001357 357 DFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLRKAAKIDPRDAQAFIDLGELL--ISSDTGAALDAFKT 434 (1093)
Q Consensus 357 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~la~~~--~~~~~~~A~~~~~~ 434 (1093)
+.++-.+....+-..+.-.......+ ..|+.++-..++..+-... ++.+- ..|.-+.|..+.+.
T Consensus 713 n~eKL~Km~~iae~r~D~~~~~qnal-----Yl~dv~ervkIl~n~g~~~---------laylta~~~G~~~~ae~l~ee 778 (1202)
T KOG0292|consen 713 NLEKLSKMMKIAEIRNDATGQFQNAL-----YLGDVKERVKILENGGQLP---------LAYLTAAAHGLEDQAEKLGEE 778 (1202)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHH-----HhccHHHHHHHHHhcCccc---------HHHHHHhhcCcHHHHHHHHHh
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcchhhhhcccccch---------------------
Q 001357 435 ARTLLKKAGEEVPIEVLNNIGVIHFEKGEFE---SAHQSFKDALGDGIWLTLLDSKTKT--------------------- 490 (1093)
Q Consensus 435 a~~~~~~~~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~--------------------- 490 (1093)
.-...+..+...+...+..--..-...+++. -+...|+.++.........+.....
T Consensus 779 ~~~~~~~lP~~~~~a~ll~pP~p~~~l~nwPLl~~s~~~fe~~~~~~~~~~av~~~~e~~~g~e~~~~e~~l~ed~~~~~ 858 (1202)
T KOG0292|consen 779 LEKQVPSLPEVDPNASLLQPPVPIMPLENWPLLSVSKGTFEGALLSRSSSLAVDRDDEGDWGEEGWDVELMLGEDGILFN 858 (1202)
T ss_pred hccccCCCCCCCCcccccCCCCccccccCCchhhhhhhhhhHhhhhhcccCcccccccccccccchhhhhcccccccccc
Q ss_pred -------------hhhhhhhhHHHhhhhhhhhhhccCCCCcCCCCchHHHHHHHHHHHHhcCChHHHHHHHHHHH-----
Q 001357 491 -------------YVIDASASMLQFKDMQLFHRFENDGNHVELPWNKVTVLFNLARLLEQIHDTVAASVLYRLIL----- 552 (1093)
Q Consensus 491 -------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l----- 552 (1093)
+.+......-......-.+.-..........+..-.-...|+.-+...|.++.|..++..-+
T Consensus 859 d~~g~~~~dE~~gWdv~d~~l~pe~~~~~~~~~~~~~~p~~~~~~~~W~~nS~L~adhvaAGsf~tA~~lL~dqvgvv~f 938 (1202)
T KOG0292|consen 859 DGAGEVGEDEGGGWDVGDLDLPPEEDTPKGADDGEFVVPAQGMSVSIWSNNSPLAADHVAAGSFETAMRLLHDQVGVVNF 938 (1202)
T ss_pred ccccccCcccccCcCcccccCCccccccccccccceecCCCCCcchhccccCcchhhhhhcCchHHHHHHHHhhhcceec
Q ss_pred -------------------------------HhcCCh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001357 553 -------------------------------FKYQDY---------------VDAYLRLAAIAKARNNLQLSIELVNEAL 586 (1093)
Q Consensus 553 -------------------------------~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al 586 (1093)
....+. ..-.+..|.-+...|.+.+|++.|..++
T Consensus 939 ~p~Kt~fl~iy~~sR~~l~~~~~~~~~~~~~R~~se~~~~~~~P~v~~~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii 1018 (1202)
T KOG0292|consen 939 GPLKTHFLKIYAGSRTYLRATPCLPVSLYPVRNWSETSSKQGLPAVGFKLSQLNKKLQKGYKLTTEGKFGEAIEKFRSII 1018 (1202)
T ss_pred ccHHhhhhhhccccceeccCCCCcccccccccccccchhhccCCcccccHHHHHHHHHHHHhhhccCcHHHHHHHHHHHH
Q ss_pred HHcC-------CChhHHHHhhhhh---------------hcccchHHH--HHHHHHhhhcCCCCChHHHHHhHhHHHHHH
Q 001357 587 KVNG-------KYPNALSMLGDLE---------------LKNDDWVKA--KETFRAASDATDGKDSYATLSLGNWNYFAA 642 (1093)
Q Consensus 587 ~~~p-------~~~~~~~~l~~~~---------------~~~g~~~~A--~~~~~~~l~~~~~~d~~~~~~l~~~~y~~~ 642 (1093)
-.-| ........+..+. +..+....+ +..|-.-..+.|.+...++....+. +++.
T Consensus 1019 ~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~-ffK~ 1097 (1202)
T KOG0292|consen 1019 YSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPMHRILALRTAMNV-FFKL 1097 (1202)
T ss_pred hheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHH-HHHh
Q ss_pred HhhcccCchHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCchhHHHH
Q 001357 643 LRNEKRAPKLEATHLEKAKELYTRVIVQHTSNLYAANGAGVVLAEKGQFDVSKDL 697 (1093)
Q Consensus 643 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 697 (1093)
+++..|..+-.++++..|..+.+-...-..-+...+...|.++
T Consensus 1098 ------------kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~eknp~Da~~l 1140 (1202)
T KOG0292|consen 1098 ------------KNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEKNPTDAYEL 1140 (1202)
T ss_pred ------------ccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCccccccc
No 473
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=49.28 E-value=92 Score=34.24 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhCC
Q 001357 823 ELENAVRVFSHLSAAS 838 (1093)
Q Consensus 823 ~l~~a~~~~~~l~~~~ 838 (1093)
.+..-+.++-.|....
T Consensus 232 ~~~~l~~~v~~l~D~~ 247 (321)
T PF07946_consen 232 ALEPLLKLVFYLIDKL 247 (321)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444455444454443
No 474
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=48.94 E-value=2.3e+02 Score=26.43 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=30.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001357 350 QVQLKLGDFRSALTNFEKVLEIYPDNCETLKALGHIYVQLGQIEKAQELLR 400 (1093)
Q Consensus 350 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 400 (1093)
..+...+.+...+.+++.++..++.++..+..+..+|...+ ..+.+.++.
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 34445566777777777777766666667777777776542 334444444
No 475
>PTZ00121 MAEBL; Provisional
Probab=48.71 E-value=2.2e+02 Score=37.03 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=5.1
Q ss_pred HHHHHHHhcCCCC
Q 001357 115 QYYNKASRIDMHE 127 (1093)
Q Consensus 115 ~~~~~a~~~~p~~ 127 (1093)
..|+-.+..-|.+
T Consensus 137 AMyqGlf~~CP~~ 149 (2084)
T PTZ00121 137 AMYQGLFKRCPLD 149 (2084)
T ss_pred HHHhchhhcCCCc
Confidence 3334444444433
No 476
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=48.67 E-value=11 Score=44.22 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=6.3
Q ss_pred CcchhccCcchhhc
Q 001357 1066 NTDELQDSDGELRE 1079 (1093)
Q Consensus 1066 ~~~~~~~~~~~~~~ 1079 (1093)
+.+-++.++++||+
T Consensus 264 ~d~i~E~~~~~i~~ 277 (822)
T KOG2141|consen 264 DDGISEISNSEIRD 277 (822)
T ss_pred CccccccccccccC
Confidence 34444444444444
No 477
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.96 E-value=34 Score=28.04 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=16.1
Q ss_pred HhcCHHHHHHHHHHHHHhhcC
Q 001357 726 AQGNFALAMKMYQNCLRKFYY 746 (1093)
Q Consensus 726 ~~g~~~~A~~~~~~al~~~~~ 746 (1093)
..|+|++|+.+|..++..|-.
T Consensus 18 ~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 18 EKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 348888888888888887643
No 478
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.89 E-value=2.8e+02 Score=32.53 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 001357 345 YYGLGQVQLKLGDFRSALTNFEKV 368 (1093)
Q Consensus 345 ~~~la~~~~~~g~~~~A~~~~~~~ 368 (1093)
|-.||.+....+++..|.++|.++
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhh
Confidence 555555555555555555555554
No 479
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=46.55 E-value=30 Score=37.34 Aligned_cols=104 Identities=21% Similarity=0.214 Sum_probs=71.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhC------------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 001357 171 VEFNRGRYSDSLEFYKRALQVH------------------PSCPGAIRLGIGLCRYKLGQLGKARQAFQRALQLDPENVE 232 (1093)
Q Consensus 171 ~~~~~g~~~~Al~~~~~al~~~------------------p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 232 (1093)
..++.++|..|..-|.+++... +.....++..++.|-.+.+.+..|+..-..++..++....
T Consensus 231 ~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tk 310 (372)
T KOG0546|consen 231 KEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTK 310 (372)
T ss_pred hhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCc
Confidence 3556666666666666555421 1111234455777778888888888777777777777888
Q ss_pred HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 001357 233 ALVALAVMDLQANEAAGIRKGMEKMQRAFEIYPYCAMALNYLANH 277 (1093)
Q Consensus 233 a~~~la~~~~~~~~~~~~~~Al~~~~~al~~~p~~~~~~~~la~~ 277 (1093)
+++..+..+....+ +++|++.+..+....|.+..+...+...
T Consensus 311 a~~Rr~~~~~~~~~---~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 311 AHYRRGQAYKLLKN---YDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred HHHHHHhHHHhhhc---hhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 88888888888777 8888888888888888877665554443
No 480
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.01 E-value=42 Score=27.53 Aligned_cols=17 Identities=24% Similarity=0.685 Sum_probs=11.2
Q ss_pred HcCChHHHHHHHHHHHH
Q 001357 174 NRGRYSDSLEFYKRALQ 190 (1093)
Q Consensus 174 ~~g~~~~Al~~~~~al~ 190 (1093)
..|+|++|+.+|..++.
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 55667777777766654
No 481
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=44.96 E-value=3e+02 Score=31.51 Aligned_cols=89 Identities=18% Similarity=0.149 Sum_probs=49.4
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHH
Q 001357 316 HSKGDYEKAGLYYMASVKEINKPHEFIFPYYGLGQVQLKLGDFRSALTNFEKVLE--IYPDNCETLKALGHIYVQLGQIE 393 (1093)
Q Consensus 316 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~ 393 (1093)
....+.+.+..++.+....-..........+.+...|+..|..+.++.++..=+. +.|+ ....+.+...+...|++.
T Consensus 77 ~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D-~~s~n~Lmd~fl~~~~~~ 155 (429)
T PF10037_consen 77 ESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD-NFSFNLLMDHFLKKGNYK 155 (429)
T ss_pred CCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC-hhhHHHHHHHHhhcccHH
Confidence 3334455555555554431111111122234566667777777777777765443 2453 445566666777777888
Q ss_pred HHHHHHHHHHHh
Q 001357 394 KAQELLRKAAKI 405 (1093)
Q Consensus 394 ~A~~~l~~~l~~ 405 (1093)
.|..+...+...
T Consensus 156 ~A~~V~~~~~lQ 167 (429)
T PF10037_consen 156 SAAKVATEMMLQ 167 (429)
T ss_pred HHHHHHHHHHHh
Confidence 777777766543
No 482
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.52 E-value=3.1e+02 Score=26.76 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=9.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHh
Q 001357 909 RKLEDEQKRLRQQEEHFQRVKEQW 932 (1093)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~w 932 (1093)
++.++....+++.+.......||=
T Consensus 148 ~~~e~~~a~k~qae~eVl~~iers 171 (227)
T KOG4691|consen 148 RKAEEVQAWKQQAEREVLQLIERS 171 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444443
No 483
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=44.42 E-value=4.5e+02 Score=28.55 Aligned_cols=37 Identities=11% Similarity=-0.137 Sum_probs=20.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 001357 140 AKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRG 176 (1093)
Q Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 176 (1093)
..+++.+.+..+++.+..+|-.....+..+.++.+.|
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG 147 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG 147 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC
Confidence 4455555555555555555555555555555555555
No 484
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.38 E-value=1e+02 Score=30.92 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCC
Q 001357 734 MKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSN 783 (1093)
Q Consensus 734 ~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 783 (1093)
++..++.+. ..+++.++..++.++...|+.++|.....++..+.|.+
T Consensus 131 ~~~a~~~l~---~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 131 IEWAERLLR---RRPDPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 344444444 46788999999999999999999999999999999944
No 485
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=43.42 E-value=73 Score=30.00 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcC
Q 001357 161 NVPALLGQACVEFNRGRYSDSLEFYKRALQVHPSCPGAIRLGIGLCRYKLG 211 (1093)
Q Consensus 161 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 211 (1093)
-....+..|...+..|+|.-|..+...++..+|++ ..++...+.+|.++|
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n-~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDN-EEARQLKADALEQLG 118 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHH
Confidence 34556667777788888888888888888888888 566777777766555
No 486
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=42.28 E-value=2.9e+02 Score=25.72 Aligned_cols=40 Identities=20% Similarity=0.067 Sum_probs=22.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Q 001357 205 LCRYKLGQLGKARQAFQRALQLDPENVEALVALAVMDLQA 244 (1093)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 244 (1093)
..+...+.....+.+++.++..++.++.....+..++...
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 3344455666666666666665555555555555555443
No 487
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=42.17 E-value=3.1e+02 Score=26.72 Aligned_cols=42 Identities=10% Similarity=0.188 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001357 848 KKINTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAA 889 (1093)
Q Consensus 848 ~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 889 (1093)
.....|...+..-+..+.....++++...+..+++..+++..
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA 90 (167)
T PRK08475 49 NFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKA 90 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788877788888777777776666666666665543
No 488
>PF13934 ELYS: Nuclear pore complex assembly
Probab=41.73 E-value=3.7e+02 Score=27.79 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCHHHH
Q 001357 655 THLEKAKELYTRVIVQHTS-NLYAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALA 733 (1093)
Q Consensus 655 ~~~~~A~~~~~~~l~~~p~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~~~~A 733 (1093)
++++.|+..+. +|. .+.....+..++...|+...|+.+++.+ .|.. ..+.....+..+ ...|...+|
T Consensus 92 ~~~~~A~~~L~-----~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~---~p~l---~s~~~~~~~~~~-La~~~v~EA 159 (226)
T PF13934_consen 92 GDFEEALELLS-----HPSLIPWFPDKILQALLRRGDPKLALRYLRAV---GPPL---SSPEALTLYFVA-LANGLVTEA 159 (226)
T ss_pred HhHHHHHHHhC-----CCCCCcccHHHHHHHHHHCCChhHHHHHHHhc---CCCC---CCHHHHHHHHHH-HHcCCHHHH
Confidence 66666666662 332 1223334566666677777777777654 2211 233333332223 555777777
Q ss_pred HHH
Q 001357 734 MKM 736 (1093)
Q Consensus 734 ~~~ 736 (1093)
..+
T Consensus 160 f~~ 162 (226)
T PF13934_consen 160 FSF 162 (226)
T ss_pred HHH
Confidence 776
No 489
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.66 E-value=1.8e+02 Score=32.21 Aligned_cols=19 Identities=11% Similarity=0.051 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhhCC
Q 001357 820 RVAELENAVRVFSHLSAAS 838 (1093)
Q Consensus 820 ~~~~l~~a~~~~~~l~~~~ 838 (1093)
.+..|....+.|..++-+.
T Consensus 285 v~~~l~k~~~~ieyih~SD 303 (440)
T KOG2357|consen 285 VVSQLNKYGDNIEYIHFSD 303 (440)
T ss_pred HHHHHHHHHhhhheEEeec
Confidence 4555666777776665543
No 490
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=40.05 E-value=4.5e+02 Score=29.40 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcCCCCCC--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 001357 676 YAANGAGVVLAEKGQFDVSKDLFTQVQEAASGSVFVQ--MPDVWINLAHVYFAQGNFALAMKMYQNCLRK 743 (1093)
Q Consensus 676 ~a~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 743 (1093)
.++.+|..++.-.|++.. --+.++..|.+.+.. ...+-+..|..|+-.|+|.+|+..|-+++..
T Consensus 236 fsL~GLlR~H~lLgDhQa----t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLly 301 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQA----TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLY 301 (525)
T ss_pred HHHHHHHHHHHHhhhhHh----hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777777788433 334455555543322 2233377889999999999999998888754
No 491
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=39.57 E-value=1.3e+02 Score=35.67 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001357 105 EKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASSAFKIVLEADRDNVPALLGQACVEFNRGRYSDSLEF 184 (1093)
Q Consensus 105 ~r~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~Al~~ 184 (1093)
.++..++.+....+.-+.-........+..+..+-..|..++|-.+|+..+..+|+ ..++..|.-+++.|-...|...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLI 96 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHH
Q ss_pred HHHH
Q 001357 185 YKRA 188 (1093)
Q Consensus 185 ~~~a 188 (1093)
++++
T Consensus 97 ~~~~ 100 (578)
T PRK15490 97 LKKV 100 (578)
T ss_pred HHHh
No 492
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=39.32 E-value=2.7e+02 Score=32.92 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001357 851 NTHVEYCKHLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKE 930 (1093)
Q Consensus 851 ~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1093)
.+.+-..+.|..+.+.+.+++...|..........++-...++++...+|+++..++..-...+.++.+.....-+...+
T Consensus 267 Er~~leeKrlk~~~~~eek~~~keE~~kekee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k~~Erkee~~ 346 (811)
T KOG4364|consen 267 ERQVLEEKRLKEKEQKEEKKAIKEENNKEKEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAKIMERKEEKS 346 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HhhhcChhh-hhhhccCCC
Q 001357 931 QWRSSTPAS-KRRERSEND 948 (1093)
Q Consensus 931 ~w~~~~~~~-~~~~~~~~~ 948 (1093)
+=..-.|+| ..+...+.+
T Consensus 347 rk~deerkK~e~ke~ea~E 365 (811)
T KOG4364|consen 347 RKSDEERKKLESKEVEAQE 365 (811)
T ss_pred hhhhhhhhhhhhhHHHHHH
No 493
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.13 E-value=3.1e+02 Score=25.22 Aligned_cols=119 Identities=10% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHhc----CCchhHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhcC
Q 001357 657 LEKAKELYTRVIVQHT---SNLYAANGAGVVLAEK----GQFDVSKDLFTQVQEAASGSVFVQMPDVWINLAHVYFAQGN 729 (1093)
Q Consensus 657 ~~~A~~~~~~~l~~~p---~~~~a~~~la~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~lg~~~~~~g~ 729 (1093)
.++-...|+..+.... +....|.....-..+. +.-..-..++++++........-.+-.-++.+-..|...-.
T Consensus 1 ~~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~ 80 (126)
T PF08311_consen 1 LEQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS 80 (126)
T ss_dssp -HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS
T ss_pred CHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 001357 730 FALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAI 777 (1093)
Q Consensus 730 ~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al 777 (1093)
.+..+|..+..+--....+..+...|..+...|++.+|.++|+.++
T Consensus 81 --~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 --DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp --HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
No 494
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=38.98 E-value=3.3e+02 Score=30.52 Aligned_cols=134 Identities=16% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhchhhhhhhHhHHHHHHHHHHHH--HHHh
Q 001357 45 IIAREYFKQGKVEQFRQILEEGSSPEIDEYYADVRYERIAILNALGVYYTYLGKIETKQREKEEHFILATQYYN--KASR 122 (1093)
Q Consensus 45 ~la~~y~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~~~~~r~~~~~~A~~~~~--~a~~ 122 (1093)
..+...+++++|..|..+|+.+++. ..+.....+...+..++.+|..--... |.+|...++ ....
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r----~l~~~~~~~~~~~~~l~~~y~~WD~fd---------~~~A~~~L~~~~~~~ 201 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRR----LLSAVNHTFYEAMIKLTRAYLHWDRFE---------HEEALDYLNDPLPER 201 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc----ccChhhhhHHHHHHHHHHHHHHHHccC---------HHHHHHHHhhccchh
Q ss_pred cCCCChhhHHHHHHHHHHcCCHHHHHHH---HHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 001357 123 IDMHEPSTWVGKGQLLLAKGEVEQASSA---FKIVLEADRD--NVPALLGQACVEFNRGRYSDSLEFYKRALQV 191 (1093)
Q Consensus 123 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~---~~~al~~~p~--~~~a~~~la~~~~~~g~~~~Al~~~~~al~~ 191 (1093)
........+-.+-.+.-....+.-.... ....-...|. -..-++.-|..-...|+|+.|+..+-+++++
T Consensus 202 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 202 LALYQVTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred hhhhhhhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
No 495
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=38.90 E-value=1.2e+02 Score=24.90 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHH
Q 001357 712 QMPDVWINLAHVYFAQGNFALAMKMYQNCLRKFYYNTDAQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAG 791 (1093)
Q Consensus 712 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la 791 (1093)
.++..+...|.-+-..|++.+|+.+|+.++.. |.+++...|+++.-.+-..
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~-----------------------------L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV-----------------------------LSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----------------------------HHHHHHhCCChHHHHHHHH
Q ss_pred HH
Q 001357 792 VA 793 (1093)
Q Consensus 792 ~~ 793 (1093)
.+
T Consensus 55 ki 56 (75)
T cd02682 55 MI 56 (75)
T ss_pred HH
No 496
>PLN03086 PRLI-interacting factor K; Provisional
Probab=38.85 E-value=2.2e+02 Score=33.77 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 001357 860 LLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHF 925 (1093)
Q Consensus 860 l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 925 (1093)
|..++++...++++.-++.|.|++..|+++++..++|.+-|+...+..-...+...+-..+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (567)
T PLN03086 5 LRRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQMQESL 70 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=38.49 E-value=92 Score=25.06 Aligned_cols=54 Identities=28% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 001357 876 QQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVKEQWR 933 (1093)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 933 (1093)
....+++-+.++...+++.+|.++++.+...+++.+++ -+.+++-.....=-||
T Consensus 16 ~d~~~kLka~k~eLk~~ee~r~e~e~~~~~~erk~rEK----nksFeELL~eS~ldWr 69 (70)
T PF13025_consen 16 EDVLAKLKAKKQELKAEEEKRKEEERARRREERKEREK----NKSFEELLNESELDWR 69 (70)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh----hcCHHHHHhcccCCCC
No 498
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.25 E-value=1.5e+02 Score=29.16 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcCCCC------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Q 001357 730 FALAMKMYQNCLRKFYYNTD------AQILLYLARTHYEAEQWQDCKKSLLRAIHLAPSNYTLRFDAGVAMQK 796 (1093)
Q Consensus 730 ~~~A~~~~~~al~~~~~~~~------~~~l~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~ 796 (1093)
.+.|+..++..-+.++.+.. --+-.....+|.+.|.+.+|.+++++.+. +|++...+--|+.+...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
No 499
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=38.15 E-value=25 Score=39.56 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=0.0
Q ss_pred ccCCcccccccCcCccccchhhhhccc-----CCCCCCcchhccCCCCCCCCCCCCCCchhhhhhhhHHHhcCCCCCCCC
Q 001357 960 RKGGKRRKKDKSSRSHYETEYAEADMM-----DYREEPEDEDASMNYREPIGQMNDQDDDVEENANDRLAAAGLEDSDVD 1034 (1093)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1093)
||.-+.|+|++++++.-.++|-++++. +..|..|++..++.-.-++++++...-+.+-.+ |.-+|
T Consensus 664 ~k~~~gk~~k~~k~~~d~d~emde~eiw~alv~srp~~e~d~ddse~d~~e~d~sd~~sd~e~~~----------d~~d~ 733 (821)
T COG5593 664 KKTADGKGKKSNKASFDSDDEMDENEIWSALVKSRPDVEDDSDDSELDFAEDDFSDSTSDDEPKL----------DAIDD 733 (821)
T ss_pred hhhccccccccccCCcCccccccHHHHHHHHhccCCccccCccccccchhhccccccCCCccccc----------ccccc
Q ss_pred CCCCCCchHHHHhhhcCCCCCChhhhh--cCCCCcchhccCcchhhccCCCCCCCCCCCCC
Q 001357 1035 DEMAPSITAARRRRALSESDDDEPFER--QLRDNTDELQDSDGELRENDHKSNGGAALDDD 1093 (1093)
Q Consensus 1035 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1093 (1093)
+|+..--+ -+||++|-+.+ -+..--.+..+|=+|--+.+ +.++.+.+||+
T Consensus 734 e~~~se~~--------~~~~~ee~l~ei~~s~d~~~d~~d~f~e~~e~~-~~~e~e~eeee 785 (821)
T COG5593 734 EDAKSEGS--------QESDQEEGLDEIFYSFDGEQDNSDSFAESSEED-ESSEEEKEEEE 785 (821)
T ss_pred hhhhcccC--------cccchhhchHHHhhcccccccchhhhhhccccC-ccccchhhhhh
No 500
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=37.85 E-value=2.2e+02 Score=32.17 Aligned_cols=68 Identities=31% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 001357 859 HLLDAAKIHREAAEREEQQNRQRQEAARQAALAEEARRKAEEQKKYLLEKRKLEDEQKRLRQQEEHFQRVK 929 (1093)
Q Consensus 859 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1093)
.....+--....-+.+|...|..+-++......+|.+|+++|++...++.+.+++ ..+|.=++.+..+
T Consensus 390 a~kraallekqqrraeear~rkqqleae~e~kreearrkaeeer~~keee~arre---firqey~rrkqlk 457 (708)
T KOG3654|consen 390 AQKRAALLEKQQRRAEEARRRKQQLEAEKEQKREEARRKAEEERAPKEEEVARRE---FIRQEYERRKQLK 457 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhhhHHH---HHHHHHHHHHHHH
Done!